Query 012783
Match_columns 456
No_of_seqs 394 out of 2810
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:15:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012783.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012783hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14901 16S rRNA methyltransf 100.0 6.4E-69 1.4E-73 561.9 38.1 368 59-456 2-374 (434)
2 PRK14903 16S rRNA methyltransf 100.0 3.8E-67 8.1E-72 546.9 36.6 352 59-456 4-356 (431)
3 PRK10901 16S rRNA methyltransf 100.0 5E-65 1.1E-69 531.5 38.5 359 59-456 3-362 (427)
4 TIGR00563 rsmB ribosomal RNA s 100.0 1.3E-64 2.9E-69 528.3 38.9 356 61-456 1-358 (426)
5 PRK14902 16S rRNA methyltransf 100.0 1.8E-64 3.9E-69 530.0 38.2 365 59-456 4-369 (444)
6 PRK14904 16S rRNA methyltransf 100.0 5.6E-64 1.2E-68 526.2 39.2 364 59-456 3-367 (445)
7 COG0144 Sun tRNA and rRNA cyto 100.0 2E-48 4.3E-53 396.3 25.6 274 166-456 1-278 (355)
8 PRK11933 yebU rRNA (cytosine-C 100.0 9.2E-44 2E-48 371.9 23.0 224 228-456 3-232 (470)
9 KOG1122 tRNA and rRNA cytosine 100.0 1.3E-38 2.7E-43 317.9 16.9 345 87-456 15-361 (460)
10 PF01189 Nol1_Nop2_Fmu: NOL1/N 100.0 2.5E-38 5.3E-43 313.2 16.1 203 249-456 1-205 (283)
11 TIGR00446 nop2p NOL1/NOP2/sun 100.0 2.2E-33 4.7E-38 275.7 18.6 189 261-456 1-189 (264)
12 PRK00202 nusB transcription an 99.9 5.6E-27 1.2E-31 208.1 13.7 128 58-202 4-132 (137)
13 PF01029 NusB: NusB family; I 99.9 2.2E-27 4.7E-32 209.8 11.0 125 59-200 2-134 (134)
14 cd00619 Terminator_NusB Transc 99.9 6E-27 1.3E-31 206.0 13.4 127 58-201 2-129 (130)
15 TIGR01951 nusB transcription a 99.9 8.2E-27 1.8E-31 204.8 13.6 126 58-200 2-128 (129)
16 cd00620 Methyltransferase_Sun 99.9 3.1E-26 6.6E-31 200.5 13.9 123 60-201 3-125 (126)
17 COG0781 NusB Transcription ter 99.9 7.6E-25 1.7E-29 195.9 13.7 134 57-202 10-145 (151)
18 KOG2198 tRNA cytosine-5-methyl 99.9 1.6E-24 3.6E-29 215.1 11.2 214 238-456 33-286 (375)
19 cd00447 NusB_Sun RNA binding d 99.9 3.3E-23 7.3E-28 181.8 13.7 124 60-201 2-128 (129)
20 PRK09634 nusB transcription an 99.9 1.5E-21 3.3E-26 182.6 14.5 93 109-202 110-202 (207)
21 KOG2360 Proliferation-associat 99.9 3.3E-21 7.3E-26 191.5 12.8 208 241-452 114-331 (413)
22 COG4123 Predicted O-methyltran 99.5 4.6E-13 1E-17 128.9 11.5 129 320-456 31-160 (248)
23 TIGR00080 pimt protein-L-isoas 99.3 2.2E-11 4.8E-16 116.0 12.6 94 322-417 66-159 (215)
24 COG2242 CobL Precorrin-6B meth 99.3 2.3E-11 5E-16 111.8 11.1 88 320-410 21-108 (187)
25 PF05175 MTS: Methyltransferas 99.3 1.9E-11 4.1E-16 112.4 10.7 93 318-414 16-108 (170)
26 PRK09328 N5-glutamine S-adenos 99.3 6.5E-11 1.4E-15 116.5 14.4 172 231-421 9-192 (275)
27 PRK03522 rumB 23S rRNA methylu 99.3 2E-11 4.3E-16 123.1 10.5 88 327-418 167-254 (315)
28 PRK15128 23S rRNA m(5)C1962 me 99.2 3E-11 6.5E-16 125.2 10.3 114 298-416 187-305 (396)
29 PRK13944 protein-L-isoaspartat 99.2 8.5E-11 1.8E-15 111.3 12.5 91 323-414 62-152 (205)
30 PF09445 Methyltransf_15: RNA 99.2 6E-11 1.3E-15 107.8 10.2 85 335-422 1-87 (163)
31 TIGR03533 L3_gln_methyl protei 99.2 1.2E-10 2.7E-15 115.7 13.3 91 331-424 119-209 (284)
32 PF08704 GCD14: tRNA methyltra 99.2 8.5E-11 1.8E-15 114.0 11.6 96 320-415 27-124 (247)
33 COG2226 UbiE Methylase involve 99.2 6.6E-11 1.4E-15 113.9 10.5 84 324-410 42-125 (238)
34 PRK13942 protein-L-isoaspartat 99.2 1.3E-10 2.8E-15 110.7 12.3 96 315-412 58-153 (212)
35 COG2519 GCD14 tRNA(1-methylade 99.2 1.3E-10 2.8E-15 111.4 11.8 102 310-413 71-172 (256)
36 PF13659 Methyltransf_26: Meth 99.2 9.7E-11 2.1E-15 100.0 9.9 82 334-417 1-83 (117)
37 TIGR03704 PrmC_rel_meth putati 99.2 1.7E-10 3.7E-15 112.7 12.9 87 334-425 87-175 (251)
38 PF01209 Ubie_methyltran: ubiE 99.2 7.9E-11 1.7E-15 113.7 9.3 85 324-410 38-122 (233)
39 PRK14967 putative methyltransf 99.2 3.1E-10 6.7E-15 108.8 13.2 107 313-426 14-126 (223)
40 PF01135 PCMT: Protein-L-isoas 99.2 1.3E-10 2.8E-15 110.3 10.4 98 316-415 55-152 (209)
41 PRK13168 rumA 23S rRNA m(5)U19 99.2 1.2E-10 2.6E-15 122.8 11.0 90 325-418 289-381 (443)
42 PF12847 Methyltransf_18: Meth 99.2 2E-10 4.4E-15 97.1 10.2 78 333-412 1-78 (112)
43 PRK11783 rlmL 23S rRNA m(2)G24 99.2 1.6E-10 3.4E-15 128.3 11.6 106 308-418 516-622 (702)
44 PRK11805 N5-glutamine S-adenos 99.2 3.6E-10 7.7E-15 113.6 13.1 86 334-422 134-219 (307)
45 COG1092 Predicted SAM-dependen 99.1 1.1E-10 2.4E-15 119.9 9.1 113 298-415 184-301 (393)
46 PRK00377 cbiT cobalt-precorrin 99.1 4.7E-10 1E-14 105.5 11.5 91 322-412 29-119 (198)
47 COG2265 TrmA SAM-dependent met 99.1 2.2E-10 4.9E-15 119.6 9.7 91 324-418 284-376 (432)
48 PF13847 Methyltransf_31: Meth 99.1 5.7E-10 1.2E-14 100.3 11.1 82 332-414 2-83 (152)
49 PRK10909 rsmD 16S rRNA m(2)G96 99.1 3.7E-10 8.1E-15 106.4 10.2 80 332-414 52-131 (199)
50 COG2518 Pcm Protein-L-isoaspar 99.1 7E-10 1.5E-14 104.1 11.5 97 313-414 52-148 (209)
51 PLN02476 O-methyltransferase 99.1 4.7E-10 1E-14 110.5 10.6 100 315-414 100-204 (278)
52 TIGR01177 conserved hypothetic 99.1 5.8E-10 1.2E-14 113.2 11.5 90 322-416 171-260 (329)
53 PF03602 Cons_hypoth95: Conser 99.1 1.7E-10 3.7E-15 107.4 6.9 82 333-416 42-126 (183)
54 PF05958 tRNA_U5-meth_tr: tRNA 99.1 2E-10 4.3E-15 117.6 8.0 90 325-419 189-293 (352)
55 PLN02781 Probable caffeoyl-CoA 99.1 5.1E-10 1.1E-14 108.3 10.0 94 320-413 55-153 (234)
56 COG2263 Predicted RNA methylas 99.1 9.5E-10 2.1E-14 101.0 11.2 98 317-425 27-126 (198)
57 PF10672 Methyltrans_SAM: S-ad 99.1 6E-10 1.3E-14 110.3 10.6 114 298-416 90-207 (286)
58 TIGR00479 rumA 23S rRNA (uraci 99.1 6E-10 1.3E-14 117.1 10.7 89 325-417 284-375 (431)
59 TIGR02085 meth_trns_rumB 23S r 99.1 6.2E-10 1.3E-14 114.9 10.3 86 329-418 229-314 (374)
60 PRK07402 precorrin-6B methylas 99.0 1.8E-09 3.9E-14 101.4 12.0 98 313-412 20-117 (196)
61 COG0742 N6-adenine-specific me 99.0 8E-10 1.7E-14 102.1 9.1 82 332-415 42-125 (187)
62 TIGR02469 CbiT precorrin-6Y C5 99.0 2.6E-09 5.5E-14 91.6 11.7 86 325-412 11-96 (124)
63 COG4122 Predicted O-methyltran 99.0 1.5E-09 3.4E-14 103.1 10.8 95 319-413 45-141 (219)
64 PRK00312 pcm protein-L-isoaspa 99.0 2.5E-09 5.3E-14 101.6 12.2 99 313-416 58-156 (212)
65 PRK04266 fibrillarin; Provisio 99.0 1.8E-09 4E-14 103.8 11.2 89 321-413 58-150 (226)
66 TIGR03534 RF_mod_PrmC protein- 99.0 2.9E-09 6.3E-14 103.1 12.8 86 333-422 87-172 (251)
67 TIGR00537 hemK_rel_arch HemK-r 99.0 4.5E-09 9.7E-14 97.2 12.5 91 319-417 5-95 (179)
68 PRK13943 protein-L-isoaspartat 99.0 3.5E-09 7.7E-14 106.8 12.4 88 324-413 71-158 (322)
69 PRK05031 tRNA (uracil-5-)-meth 99.0 1.7E-09 3.6E-14 111.2 10.3 81 334-418 207-302 (362)
70 PTZ00146 fibrillarin; Provisio 99.0 2.4E-09 5.2E-14 105.8 10.8 82 329-413 128-211 (293)
71 PF01170 UPF0020: Putative RNA 99.0 3.9E-09 8.4E-14 98.0 11.5 99 316-415 11-117 (179)
72 TIGR00536 hemK_fam HemK family 99.0 5.4E-09 1.2E-13 103.9 13.2 89 334-425 115-203 (284)
73 TIGR02752 MenG_heptapren 2-hep 99.0 4.2E-09 9E-14 101.1 11.9 88 323-412 35-122 (231)
74 TIGR00095 RNA methyltransferas 99.0 1.7E-09 3.7E-14 101.2 8.7 82 333-416 49-133 (189)
75 TIGR02143 trmA_only tRNA (urac 99.0 2.6E-09 5.7E-14 109.4 10.5 80 335-418 199-293 (353)
76 PRK00107 gidB 16S rRNA methylt 99.0 4.9E-09 1.1E-13 97.9 11.2 76 333-412 45-120 (187)
77 PF01596 Methyltransf_3: O-met 99.0 1.3E-09 2.7E-14 103.3 7.2 93 322-414 34-131 (205)
78 PRK14966 unknown domain/N5-glu 99.0 5.7E-09 1.2E-13 107.9 12.5 105 313-420 230-335 (423)
79 PRK00050 16S rRNA m(4)C1402 me 98.9 2.2E-09 4.8E-14 106.8 9.0 93 324-419 10-105 (296)
80 PRK15001 SAM-dependent 23S rib 98.9 5E-09 1.1E-13 107.7 11.8 94 319-415 214-309 (378)
81 PF02475 Met_10: Met-10+ like- 98.9 2.6E-09 5.6E-14 100.6 8.8 85 331-418 99-183 (200)
82 TIGR00138 gidB 16S rRNA methyl 98.9 5E-09 1.1E-13 97.4 10.2 76 333-412 42-117 (181)
83 COG2890 HemK Methylase of poly 98.9 4.5E-09 9.7E-14 104.3 10.4 78 336-418 113-190 (280)
84 PRK08287 cobalt-precorrin-6Y C 98.9 9.7E-09 2.1E-13 95.6 11.9 92 316-412 14-105 (187)
85 PRK14968 putative methyltransf 98.9 1.9E-08 4.1E-13 92.8 12.7 100 313-418 4-104 (188)
86 COG2813 RsmC 16S RNA G1207 met 98.9 1.1E-08 2.4E-13 100.8 10.9 93 318-415 143-235 (300)
87 PLN02233 ubiquinone biosynthes 98.9 1.5E-08 3.2E-13 99.7 11.0 85 324-410 64-151 (261)
88 PRK04338 N(2),N(2)-dimethylgua 98.8 1.3E-08 2.8E-13 105.2 10.6 88 323-413 46-134 (382)
89 PLN02589 caffeoyl-CoA O-methyl 98.8 1.2E-08 2.7E-13 99.2 9.5 95 319-413 65-165 (247)
90 smart00650 rADc Ribosomal RNA 98.8 2E-08 4.3E-13 92.1 10.2 85 324-415 4-88 (169)
91 PRK09489 rsmC 16S ribosomal RN 98.8 2.6E-08 5.7E-13 101.5 11.6 91 318-414 181-271 (342)
92 PHA03412 putative methyltransf 98.8 2.8E-08 6E-13 95.4 10.9 94 314-418 33-128 (241)
93 KOG2915 tRNA(1-methyladenosine 98.8 3E-08 6.6E-13 95.5 10.6 99 315-415 89-188 (314)
94 PRK01544 bifunctional N5-gluta 98.8 2.9E-08 6.4E-13 106.3 11.6 84 333-419 138-221 (506)
95 PRK11873 arsM arsenite S-adeno 98.8 3.4E-08 7.4E-13 97.3 10.7 82 329-412 73-154 (272)
96 PLN02244 tocopherol O-methyltr 98.8 4.4E-08 9.4E-13 100.0 11.5 76 332-410 117-192 (340)
97 PTZ00338 dimethyladenosine tra 98.8 4.6E-08 1E-12 97.7 11.3 98 315-418 18-115 (294)
98 PRK00121 trmB tRNA (guanine-N( 98.8 2.9E-08 6.3E-13 93.8 9.4 79 333-413 40-120 (202)
99 PRK11036 putative S-adenosyl-L 98.8 3.5E-08 7.5E-13 96.5 9.9 79 332-413 43-121 (255)
100 KOG2904 Predicted methyltransf 98.8 2.6E-08 5.7E-13 96.0 8.7 93 333-426 148-245 (328)
101 PRK11207 tellurite resistance 98.8 5E-08 1.1E-12 91.8 10.6 84 322-411 19-102 (197)
102 COG2230 Cfa Cyclopropane fatty 98.8 4.3E-08 9.3E-13 96.4 10.4 87 318-410 57-143 (283)
103 PF02353 CMAS: Mycolic acid cy 98.8 3.5E-08 7.5E-13 97.6 9.8 87 318-410 47-133 (273)
104 TIGR00438 rrmJ cell division p 98.8 4.3E-08 9.3E-13 91.4 9.9 80 328-419 27-113 (188)
105 PF13649 Methyltransf_25: Meth 98.7 3.8E-08 8.2E-13 82.2 7.4 71 337-410 1-73 (101)
106 COG2520 Predicted methyltransf 98.7 4.3E-08 9.2E-13 99.0 8.5 84 332-418 187-270 (341)
107 TIGR00091 tRNA (guanine-N(7)-) 98.7 7.2E-08 1.6E-12 90.5 9.2 80 332-413 15-96 (194)
108 PRK10742 putative methyltransf 98.7 8.5E-08 1.8E-12 92.5 9.7 92 322-416 75-176 (250)
109 PRK15451 tRNA cmo(5)U34 methyl 98.7 1.1E-07 2.3E-12 92.7 10.1 77 331-410 54-131 (247)
110 TIGR00308 TRM1 tRNA(guanine-26 98.7 7.7E-08 1.7E-12 99.0 9.5 78 335-413 46-123 (374)
111 PLN03075 nicotianamine synthas 98.7 1.1E-07 2.3E-12 94.5 10.1 78 333-411 123-202 (296)
112 KOG1540 Ubiquinone biosynthesi 98.7 1.4E-07 3.1E-12 90.3 10.1 86 324-410 91-183 (296)
113 PRK14896 ksgA 16S ribosomal RN 98.6 1.6E-07 3.5E-12 92.1 10.3 93 315-416 11-103 (258)
114 KOG2730 Methylase [General fun 98.6 2.9E-08 6.3E-13 92.9 4.6 87 333-422 94-183 (263)
115 PRK00274 ksgA 16S ribosomal RN 98.6 1.5E-07 3.2E-12 93.1 9.9 93 316-416 25-117 (272)
116 TIGR00477 tehB tellurite resis 98.6 1.8E-07 3.9E-12 87.9 9.8 84 324-414 21-104 (195)
117 TIGR00406 prmA ribosomal prote 98.6 2.3E-07 5E-12 92.5 10.8 90 320-414 144-235 (288)
118 PRK04457 spermidine synthase; 98.6 1.6E-07 3.4E-12 92.4 9.5 81 331-412 64-144 (262)
119 TIGR02021 BchM-ChlM magnesium 98.6 2.9E-07 6.3E-12 87.8 10.7 73 331-410 53-125 (219)
120 PRK00216 ubiE ubiquinone/menaq 98.6 3.8E-07 8.3E-12 87.2 11.2 87 323-410 41-127 (239)
121 PLN02672 methionine S-methyltr 98.6 2.2E-07 4.8E-12 106.1 10.9 86 334-420 119-219 (1082)
122 PHA03411 putative methyltransf 98.6 2.8E-07 6.2E-12 90.4 10.3 81 330-419 61-141 (279)
123 PRK14121 tRNA (guanine-N(7)-)- 98.6 3.2E-07 6.9E-12 94.4 10.7 87 326-414 115-202 (390)
124 COG1041 Predicted DNA modifica 98.6 1.7E-07 3.8E-12 94.1 8.5 94 319-417 183-277 (347)
125 COG2264 PrmA Ribosomal protein 98.6 2E-07 4.4E-12 92.4 8.7 89 320-412 147-237 (300)
126 PLN02396 hexaprenyldihydroxybe 98.6 2.5E-07 5.4E-12 93.5 9.4 77 330-410 128-204 (322)
127 PRK11727 23S rRNA mA1618 methy 98.5 3.5E-07 7.7E-12 92.2 10.1 86 333-419 114-204 (321)
128 PRK11188 rrmJ 23S rRNA methylt 98.5 1.8E-07 4E-12 88.9 7.7 70 331-412 49-125 (209)
129 PRK08317 hypothetical protein; 98.5 5.7E-07 1.2E-11 85.7 11.1 84 325-411 11-94 (241)
130 PF06325 PrmA: Ribosomal prote 98.5 2.6E-07 5.7E-12 92.1 9.1 86 319-411 145-232 (295)
131 PRK01683 trans-aconitate 2-met 98.5 4.9E-07 1.1E-11 88.3 10.7 89 317-414 15-103 (258)
132 TIGR00740 methyltransferase, p 98.5 5E-07 1.1E-11 87.4 10.2 77 332-411 52-129 (239)
133 PTZ00098 phosphoethanolamine N 98.5 5.3E-07 1.1E-11 88.8 10.1 95 310-410 28-123 (263)
134 PRK10258 biotin biosynthesis p 98.5 3.1E-07 6.7E-12 89.4 8.0 87 316-412 25-111 (251)
135 PRK14103 trans-aconitate 2-met 98.5 4.9E-07 1.1E-11 88.3 9.4 80 323-413 19-98 (255)
136 PRK00517 prmA ribosomal protei 98.5 8.3E-07 1.8E-11 86.6 10.0 71 331-412 117-187 (250)
137 PRK12335 tellurite resistance 98.5 8.4E-07 1.8E-11 88.4 10.1 80 327-413 114-193 (287)
138 cd02440 AdoMet_MTases S-adenos 98.4 9.9E-07 2.1E-11 71.2 8.2 79 336-417 1-79 (107)
139 KOG1663 O-methyltransferase [S 98.4 1.2E-06 2.5E-11 83.1 9.5 100 314-413 54-158 (237)
140 PF02384 N6_Mtase: N-6 DNA Met 98.4 9.8E-07 2.1E-11 88.7 9.6 107 313-419 26-140 (311)
141 PRK06202 hypothetical protein; 98.4 8.5E-07 1.8E-11 85.4 8.7 79 328-411 55-136 (232)
142 COG2227 UbiG 2-polyprenyl-3-me 98.4 4.2E-07 9.1E-12 86.8 6.4 73 332-410 58-130 (243)
143 PRK07580 Mg-protoporphyrin IX 98.4 1.4E-06 3.1E-11 83.2 10.1 73 332-411 62-134 (230)
144 PRK00811 spermidine synthase; 98.4 1.1E-06 2.5E-11 87.3 9.5 80 333-413 76-159 (283)
145 TIGR03587 Pse_Me-ase pseudamin 98.4 1.3E-06 2.9E-11 82.7 9.5 71 331-410 41-111 (204)
146 PF03848 TehB: Tellurite resis 98.4 2.1E-06 4.6E-11 80.3 10.4 87 316-410 14-100 (192)
147 PLN02336 phosphoethanolamine N 98.4 1.7E-06 3.8E-11 92.0 11.0 84 322-410 255-338 (475)
148 KOG3420 Predicted RNA methylas 98.4 4E-07 8.7E-12 80.2 5.0 86 332-425 47-132 (185)
149 PRK15068 tRNA mo(5)U34 methylt 98.4 2.2E-06 4.8E-11 86.8 10.8 83 324-410 113-195 (322)
150 PRK11705 cyclopropane fatty ac 98.4 1.7E-06 3.6E-11 89.7 10.1 83 318-410 152-234 (383)
151 KOG2187 tRNA uracil-5-methyltr 98.4 5.5E-07 1.2E-11 93.9 6.4 91 325-419 375-470 (534)
152 PLN02585 magnesium protoporphy 98.4 1.7E-06 3.6E-11 87.3 9.6 71 333-410 144-218 (315)
153 TIGR00755 ksgA dimethyladenosi 98.4 2.2E-06 4.7E-11 83.8 10.1 90 317-415 13-105 (253)
154 PF08241 Methyltransf_11: Meth 98.4 9E-07 1.9E-11 71.6 6.2 66 338-410 1-66 (95)
155 TIGR00006 S-adenosyl-methyltra 98.3 1.6E-06 3.5E-11 86.6 8.9 92 324-418 11-106 (305)
156 COG0116 Predicted N6-adenine-s 98.3 3E-06 6.6E-11 86.4 10.6 91 324-415 182-310 (381)
157 smart00828 PKS_MT Methyltransf 98.3 2.9E-06 6.3E-11 80.9 9.4 73 335-410 1-73 (224)
158 TIGR02716 C20_methyl_CrtF C-20 98.3 4.7E-06 1E-10 83.6 11.4 85 321-410 137-221 (306)
159 PRK06922 hypothetical protein; 98.3 3.4E-06 7.3E-11 91.5 10.5 83 327-412 412-495 (677)
160 PRK05785 hypothetical protein; 98.3 2.2E-06 4.7E-11 82.5 7.7 66 333-410 51-116 (226)
161 TIGR01934 MenG_MenH_UbiE ubiqu 98.3 5.3E-06 1.2E-10 78.4 10.2 83 324-410 30-112 (223)
162 PRK05134 bifunctional 3-demeth 98.2 6.3E-06 1.4E-10 79.2 9.7 85 323-412 38-122 (233)
163 PRK11783 rlmL 23S rRNA m(2)G24 98.2 6.9E-06 1.5E-10 91.5 11.3 89 327-415 183-314 (702)
164 KOG1271 Methyltransferases [Ge 98.2 4.5E-06 9.7E-11 76.4 7.7 74 334-409 68-141 (227)
165 COG4106 Tam Trans-aconitate me 98.2 2.8E-06 6.1E-11 79.7 6.4 84 319-412 17-100 (257)
166 TIGR00452 methyltransferase, p 98.2 9.4E-06 2E-10 81.8 10.6 82 325-410 113-194 (314)
167 COG0030 KsgA Dimethyladenosine 98.2 1E-05 2.2E-10 78.9 10.5 91 322-418 19-109 (259)
168 TIGR02072 BioC biotin biosynth 98.2 5.1E-06 1.1E-10 79.3 8.3 92 316-414 14-108 (240)
169 PRK11088 rrmA 23S rRNA methylt 98.2 7.8E-06 1.7E-10 80.7 9.6 91 312-410 64-157 (272)
170 PLN02366 spermidine synthase 98.2 7.7E-06 1.7E-10 82.3 9.5 82 332-414 90-175 (308)
171 PRK01581 speE spermidine synth 98.2 8.7E-06 1.9E-10 83.0 9.6 80 333-413 150-235 (374)
172 COG2521 Predicted archaeal met 98.2 1.2E-06 2.7E-11 82.9 3.2 90 326-418 127-219 (287)
173 TIGR00417 speE spermidine synt 98.2 1.1E-05 2.4E-10 79.7 10.1 81 333-414 72-155 (270)
174 TIGR03438 probable methyltrans 98.1 1.3E-05 2.8E-10 80.4 10.4 66 332-397 62-127 (301)
175 TIGR01983 UbiG ubiquinone bios 98.1 1.3E-05 2.8E-10 76.3 9.7 76 332-411 44-119 (224)
176 KOG3191 Predicted N6-DNA-methy 98.1 1.3E-05 2.9E-10 73.3 9.0 79 333-415 43-121 (209)
177 PF01728 FtsJ: FtsJ-like methy 98.1 3.5E-06 7.6E-11 77.9 4.9 75 331-417 21-106 (181)
178 PRK03612 spermidine synthase; 98.1 7E-06 1.5E-10 88.5 7.5 83 332-415 296-384 (521)
179 PLN02336 phosphoethanolamine N 98.1 1.3E-05 2.9E-10 85.2 9.6 94 317-416 21-115 (475)
180 PLN02490 MPBQ/MSBQ methyltrans 98.1 1.2E-05 2.5E-10 81.9 8.6 74 332-411 112-185 (340)
181 PF05401 NodS: Nodulation prot 98.0 1.1E-05 2.3E-10 75.3 6.8 80 323-410 33-112 (201)
182 PRK13255 thiopurine S-methyltr 98.0 3.4E-05 7.4E-10 73.9 10.4 74 330-409 34-121 (218)
183 TIGR03840 TMPT_Se_Te thiopurin 98.0 2.3E-05 4.9E-10 74.8 8.8 73 332-410 33-119 (213)
184 KOG1270 Methyltransferases [Co 98.0 8.6E-06 1.9E-10 78.6 5.8 74 330-410 86-164 (282)
185 PF08242 Methyltransf_12: Meth 98.0 1.4E-06 3.1E-11 72.1 0.3 71 338-410 1-72 (99)
186 COG0293 FtsJ 23S rRNA methylas 98.0 1.9E-05 4.1E-10 74.3 7.7 77 331-419 43-126 (205)
187 PF02390 Methyltransf_4: Putat 98.0 3.4E-05 7.4E-10 72.6 9.2 78 335-414 19-98 (195)
188 PF01269 Fibrillarin: Fibrilla 98.0 7.4E-05 1.6E-09 70.9 11.2 83 330-415 70-154 (229)
189 PF07021 MetW: Methionine bios 98.0 2.5E-05 5.5E-10 72.6 7.9 70 331-410 11-81 (193)
190 PF01795 Methyltransf_5: MraW 97.9 1.5E-05 3.3E-10 79.7 5.9 91 324-417 11-106 (310)
191 smart00138 MeTrc Methyltransfe 97.9 3.4E-05 7.3E-10 76.0 8.2 78 332-410 98-209 (264)
192 PRK11760 putative 23S rRNA C24 97.9 3.1E-05 6.6E-10 78.1 7.8 78 331-420 209-286 (357)
193 TIGR02081 metW methionine bios 97.9 4E-05 8.6E-10 71.7 8.2 72 332-413 12-84 (194)
194 KOG1541 Predicted protein carb 97.9 2.9E-05 6.3E-10 73.2 7.0 89 313-410 28-118 (270)
195 COG4076 Predicted RNA methylas 97.8 1.9E-05 4.1E-10 72.6 4.7 69 335-410 34-102 (252)
196 COG0286 HsdM Type I restrictio 97.8 0.00012 2.6E-09 78.4 11.5 109 313-421 166-281 (489)
197 KOG0820 Ribosomal RNA adenine 97.8 8.9E-05 1.9E-09 72.0 9.3 91 324-420 49-141 (315)
198 PF08003 Methyltransf_9: Prote 97.8 0.00087 1.9E-08 66.6 16.4 90 325-424 107-196 (315)
199 PLN02823 spermine synthase 97.8 9.3E-05 2E-09 75.3 9.3 78 334-412 104-184 (336)
200 COG0275 Predicted S-adenosylme 97.8 9.8E-05 2.1E-09 72.9 9.1 92 324-417 14-109 (314)
201 cd00315 Cyt_C5_DNA_methylase C 97.8 3.7E-05 8.1E-10 76.2 6.1 79 336-423 2-81 (275)
202 KOG1661 Protein-L-isoaspartate 97.8 9.2E-05 2E-09 69.4 8.1 89 326-415 73-173 (237)
203 TIGR02987 met_A_Alw26 type II 97.8 9.7E-05 2.1E-09 79.8 9.5 85 334-419 32-127 (524)
204 PF05185 PRMT5: PRMT5 arginine 97.7 7.5E-05 1.6E-09 78.9 7.7 76 334-411 187-265 (448)
205 KOG2671 Putative RNA methylase 97.7 3.3E-05 7.2E-10 77.0 4.1 93 320-415 195-295 (421)
206 COG0220 Predicted S-adenosylme 97.7 0.00016 3.4E-09 69.6 8.6 78 335-414 50-129 (227)
207 TIGR00478 tly hemolysin TlyA f 97.7 6E-05 1.3E-09 72.6 5.2 44 332-377 74-118 (228)
208 PF13489 Methyltransf_23: Meth 97.6 0.00023 4.9E-09 63.5 8.4 50 321-373 9-59 (161)
209 KOG1499 Protein arginine N-met 97.6 0.00023 5.1E-09 71.5 8.7 75 332-410 59-133 (346)
210 PF00398 RrnaAD: Ribosomal RNA 97.6 0.00019 4.2E-09 70.5 8.1 89 321-415 18-108 (262)
211 PF02527 GidB: rRNA small subu 97.6 0.0003 6.5E-09 65.6 8.8 76 336-415 51-126 (184)
212 COG0357 GidB Predicted S-adeno 97.5 0.0004 8.6E-09 66.2 8.9 80 334-416 68-147 (215)
213 PRK04148 hypothetical protein; 97.5 0.00046 1E-08 60.8 8.3 75 325-410 8-83 (134)
214 PF04445 SAM_MT: Putative SAM- 97.5 0.00023 4.9E-09 68.5 6.8 89 323-414 63-161 (234)
215 TIGR01444 fkbM_fam methyltrans 97.5 0.00045 9.7E-09 60.9 7.9 58 336-395 1-58 (143)
216 PF02005 TRM: N2,N2-dimethylgu 97.4 0.00034 7.4E-09 72.3 7.8 79 334-412 50-129 (377)
217 COG3963 Phospholipid N-methylt 97.4 0.0006 1.3E-08 61.9 8.3 90 322-417 37-130 (194)
218 KOG4589 Cell division protein 97.4 0.00031 6.8E-09 64.7 6.5 77 331-419 67-151 (232)
219 PF01564 Spermine_synth: Sperm 97.4 0.00039 8.4E-09 67.9 7.7 87 326-414 70-160 (246)
220 COG1889 NOP1 Fibrillarin-like 97.4 0.00056 1.2E-08 63.9 8.1 80 330-413 73-154 (231)
221 KOG1500 Protein arginine N-met 97.4 0.00069 1.5E-08 67.6 8.3 75 333-412 177-251 (517)
222 PRK13256 thiopurine S-methyltr 97.3 0.001 2.2E-08 64.1 9.2 77 330-410 40-130 (226)
223 PF01861 DUF43: Protein of unk 97.3 0.00042 9.1E-09 66.6 6.3 108 308-419 18-127 (243)
224 COG0421 SpeE Spermidine syntha 97.3 0.00086 1.9E-08 66.6 8.7 90 321-412 65-157 (282)
225 PF10294 Methyltransf_16: Puta 97.3 0.0007 1.5E-08 62.4 7.6 78 331-410 43-125 (173)
226 PF13578 Methyltransf_24: Meth 97.3 8.6E-05 1.9E-09 62.3 0.9 81 338-419 1-84 (106)
227 PF05971 Methyltransf_10: Prot 97.2 0.0014 3.1E-08 65.3 8.3 84 334-418 103-191 (299)
228 PF13679 Methyltransf_32: Meth 97.2 0.0017 3.8E-08 57.6 8.1 63 332-394 24-91 (141)
229 PRK01544 bifunctional N5-gluta 97.1 0.0017 3.6E-08 69.9 9.0 80 333-414 347-427 (506)
230 COG3897 Predicted methyltransf 97.1 0.00054 1.2E-08 63.7 4.5 70 333-410 79-148 (218)
231 PF05724 TPMT: Thiopurine S-me 97.1 0.0013 2.7E-08 63.1 6.9 89 329-425 33-132 (218)
232 KOG4300 Predicted methyltransf 97.0 0.0013 2.7E-08 61.8 6.1 89 328-418 71-160 (252)
233 KOG1099 SAM-dependent methyltr 97.0 0.0012 2.6E-08 62.7 5.9 88 335-453 43-146 (294)
234 PF04816 DUF633: Family of unk 97.0 0.0032 6.9E-08 59.8 8.5 76 337-418 1-76 (205)
235 KOG3010 Methyltransferase [Gen 96.9 0.00098 2.1E-08 63.9 4.2 118 326-448 25-155 (261)
236 PF00145 DNA_methylase: C-5 cy 96.9 0.0017 3.6E-08 65.0 6.1 77 336-422 2-79 (335)
237 COG1867 TRM1 N2,N2-dimethylgua 96.9 0.002 4.4E-08 65.4 6.4 77 334-412 53-129 (380)
238 PF03291 Pox_MCEL: mRNA cappin 96.8 0.0039 8.4E-08 63.5 8.3 76 333-410 62-151 (331)
239 KOG1596 Fibrillarin and relate 96.7 0.0026 5.5E-08 61.0 5.5 84 329-415 152-237 (317)
240 PF12147 Methyltransf_20: Puta 96.7 0.011 2.3E-07 58.5 9.6 88 332-425 134-224 (311)
241 PHA01634 hypothetical protein 96.6 0.0084 1.8E-07 52.1 7.6 72 333-411 28-99 (156)
242 KOG1227 Putative methyltransfe 96.6 0.00082 1.8E-08 66.2 1.0 75 333-411 194-269 (351)
243 TIGR00675 dcm DNA-methyltransf 96.5 0.0055 1.2E-07 62.0 6.8 79 337-424 1-79 (315)
244 PF00891 Methyltransf_2: O-met 96.5 0.008 1.7E-07 58.0 7.7 74 324-410 91-164 (241)
245 PF05219 DREV: DREV methyltran 96.4 0.0076 1.6E-07 58.7 6.4 41 333-376 94-134 (265)
246 KOG1253 tRNA methyltransferase 96.4 0.0018 4E-08 67.7 2.2 83 331-413 107-192 (525)
247 COG4976 Predicted methyltransf 96.3 0.0013 2.8E-08 62.6 0.9 72 329-409 121-193 (287)
248 PF08123 DOT1: Histone methyla 96.2 0.02 4.2E-07 54.4 7.9 92 325-417 34-135 (205)
249 KOG2078 tRNA modification enzy 96.1 0.0023 5E-08 65.8 1.1 66 331-399 247-313 (495)
250 KOG2899 Predicted methyltransf 96.0 0.0096 2.1E-07 57.3 5.0 47 333-380 58-104 (288)
251 COG1189 Predicted rRNA methyla 95.9 0.015 3.2E-07 55.9 6.0 76 333-415 79-155 (245)
252 PF06080 DUF938: Protein of un 95.9 0.032 6.9E-07 52.7 8.0 76 334-410 26-108 (204)
253 KOG2782 Putative SAM dependent 95.9 0.0059 1.3E-07 57.7 3.0 94 324-419 34-133 (303)
254 COG4262 Predicted spermidine s 95.9 0.034 7.4E-07 56.5 8.3 89 332-421 288-382 (508)
255 KOG1098 Putative SAM-dependent 95.8 0.008 1.7E-07 64.4 3.7 39 331-369 42-80 (780)
256 COG0270 Dcm Site-specific DNA 95.7 0.021 4.5E-07 58.1 6.3 81 335-423 4-86 (328)
257 COG1568 Predicted methyltransf 95.6 0.016 3.6E-07 56.6 4.9 104 309-415 127-232 (354)
258 PF03059 NAS: Nicotianamine sy 95.6 0.052 1.1E-06 53.7 8.4 80 334-414 121-202 (276)
259 PRK10458 DNA cytosine methylas 95.4 0.068 1.5E-06 56.9 9.0 83 334-421 88-186 (467)
260 TIGR00497 hsdM type I restrict 95.4 0.064 1.4E-06 57.8 8.9 106 312-417 194-306 (501)
261 PF11599 AviRa: RRNA methyltra 95.3 0.026 5.5E-07 53.5 4.9 58 321-378 36-97 (246)
262 PF09243 Rsm22: Mitochondrial 95.3 0.046 1E-06 54.2 7.1 49 333-381 33-81 (274)
263 TIGR03439 methyl_EasF probable 95.3 0.053 1.1E-06 54.9 7.5 65 332-396 75-143 (319)
264 PF07279 DUF1442: Protein of u 94.9 0.19 4.1E-06 47.8 9.6 94 318-413 26-124 (218)
265 COG2384 Predicted SAM-dependen 94.8 0.11 2.3E-06 49.6 7.6 76 333-410 16-91 (226)
266 PRK00536 speE spermidine synth 94.7 0.22 4.8E-06 49.0 9.7 81 324-412 64-147 (262)
267 PF05891 Methyltransf_PK: AdoM 94.2 0.069 1.5E-06 50.9 4.8 74 333-410 55-128 (218)
268 PRK11524 putative methyltransf 94.0 0.11 2.4E-06 51.7 6.1 47 331-380 206-252 (284)
269 KOG1501 Arginine N-methyltrans 93.9 0.1 2.2E-06 54.2 5.8 85 335-421 68-155 (636)
270 KOG1975 mRNA cap methyltransfe 93.7 0.18 3.9E-06 50.7 6.9 85 322-410 108-202 (389)
271 KOG2361 Predicted methyltransf 93.7 0.074 1.6E-06 51.3 4.1 58 336-395 74-132 (264)
272 PF07091 FmrO: Ribosomal RNA m 93.2 0.29 6.2E-06 47.7 7.2 73 333-410 105-177 (251)
273 COG0500 SmtA SAM-dependent met 93.1 0.58 1.3E-05 38.9 8.4 75 337-413 52-128 (257)
274 COG2933 Predicted SAM-dependen 93.0 0.2 4.3E-06 48.9 5.8 70 331-412 209-278 (358)
275 PLN02232 ubiquinone biosynthes 93.0 0.15 3.2E-06 46.3 4.7 48 362-410 1-50 (160)
276 PF01555 N6_N4_Mtase: DNA meth 92.9 0.17 3.8E-06 47.4 5.4 43 331-376 189-231 (231)
277 PF06962 rRNA_methylase: Putat 92.7 0.31 6.8E-06 43.3 6.3 52 360-411 1-53 (140)
278 KOG0024 Sorbitol dehydrogenase 92.1 0.61 1.3E-05 47.0 8.0 101 310-419 146-254 (354)
279 PRK13699 putative methylase; P 92.0 0.36 7.9E-06 46.5 6.3 49 331-382 161-209 (227)
280 PF04989 CmcI: Cephalosporin h 92.0 0.16 3.5E-06 48.1 3.7 80 334-415 33-122 (206)
281 PRK10611 chemotaxis methyltran 91.0 0.22 4.9E-06 49.7 3.8 76 335-410 117-229 (287)
282 PRK01747 mnmC bifunctional tRN 89.6 0.47 1E-05 52.8 5.3 88 334-428 58-185 (662)
283 PF01739 CheR: CheR methyltran 89.6 0.22 4.9E-06 46.9 2.3 77 333-410 31-142 (196)
284 COG3129 Predicted SAM-dependen 88.5 0.76 1.7E-05 44.2 5.0 84 333-417 78-166 (292)
285 COG1064 AdhP Zn-dependent alco 88.0 1.7 3.7E-05 44.3 7.5 76 329-413 162-238 (339)
286 COG1352 CheR Methylase of chem 87.8 1.1 2.4E-05 44.3 5.8 44 334-377 97-148 (268)
287 KOG3115 Methyltransferase-like 87.1 1.3 2.8E-05 41.9 5.5 64 334-399 61-131 (249)
288 PF05050 Methyltransf_21: Meth 85.9 1.8 3.8E-05 38.4 5.7 43 339-381 1-48 (167)
289 KOG0822 Protein kinase inhibit 85.2 1.2 2.7E-05 47.5 4.9 74 335-410 369-445 (649)
290 PF10354 DUF2431: Domain of un 83.1 7.3 0.00016 35.6 8.5 78 341-418 4-89 (166)
291 KOG2651 rRNA adenine N-6-methy 83.0 3.3 7.1E-05 42.7 6.6 51 323-375 143-193 (476)
292 KOG0821 Predicted ribosomal RN 82.1 3.2 7E-05 39.8 5.8 70 324-397 41-110 (326)
293 COG2961 ComJ Protein involved 80.3 7 0.00015 38.1 7.5 106 306-419 56-171 (279)
294 PF05148 Methyltransf_8: Hypot 80.0 4.8 0.0001 38.4 6.2 59 331-410 70-128 (219)
295 KOG0022 Alcohol dehydrogenase, 79.8 4.3 9.3E-05 41.0 6.1 58 324-385 183-240 (375)
296 KOG3987 Uncharacterized conser 79.8 0.44 9.6E-06 45.1 -0.7 41 333-376 112-152 (288)
297 KOG4058 Uncharacterized conser 79.5 4.6 0.0001 36.4 5.6 71 325-397 64-134 (199)
298 PF04031 Las1: Las1-like ; In 79.2 13 0.00028 33.7 8.5 37 187-236 84-120 (154)
299 PF10237 N6-adenineMlase: Prob 79.0 6.9 0.00015 35.7 6.8 93 315-420 5-102 (162)
300 cd08283 FDH_like_1 Glutathione 78.8 5.9 0.00013 40.8 7.2 50 327-377 178-228 (386)
301 KOG1269 SAM-dependent methyltr 78.2 3.4 7.4E-05 42.7 5.1 85 328-415 105-190 (364)
302 COG1062 AdhC Zn-dependent alco 77.8 5.6 0.00012 40.6 6.3 58 324-385 176-233 (366)
303 PF04378 RsmJ: Ribosomal RNA s 77.5 2.7 5.9E-05 41.0 3.9 73 340-416 62-137 (245)
304 KOG2940 Predicted methyltransf 76.4 2.6 5.6E-05 40.7 3.3 72 333-410 72-143 (325)
305 PRK06194 hypothetical protein; 76.1 14 0.0003 35.9 8.7 84 334-420 6-99 (287)
306 PRK08251 short chain dehydroge 75.6 24 0.00053 33.3 10.0 84 334-418 2-95 (248)
307 PF00107 ADH_zinc_N: Zinc-bind 75.4 2.7 5.8E-05 35.8 2.9 66 343-417 1-68 (130)
308 PTZ00357 methyltransferase; Pr 75.3 10 0.00023 42.1 7.8 63 336-398 703-776 (1072)
309 PRK08213 gluconate 5-dehydroge 74.4 18 0.00039 34.5 8.9 81 333-416 11-101 (259)
310 PF03141 Methyltransf_29: Puta 74.4 3.1 6.7E-05 44.4 3.6 66 335-410 119-187 (506)
311 PF11899 DUF3419: Protein of u 74.3 7.1 0.00015 40.6 6.2 54 320-376 22-75 (380)
312 KOG2912 Predicted DNA methylas 74.3 3.5 7.5E-05 41.6 3.7 79 338-417 107-191 (419)
313 PF02254 TrkA_N: TrkA-N domain 73.1 5.7 0.00012 33.2 4.4 64 342-413 4-71 (116)
314 KOG1709 Guanidinoacetate methy 72.8 13 0.00029 35.6 7.0 77 332-412 100-177 (271)
315 COG4798 Predicted methyltransf 72.2 2.6 5.6E-05 39.7 2.1 45 325-369 40-84 (238)
316 PLN03209 translocon at the inn 72.0 17 0.00036 39.9 8.6 82 329-411 75-166 (576)
317 PRK13394 3-hydroxybutyrate deh 71.8 21 0.00045 34.0 8.5 83 334-419 7-99 (262)
318 PRK06949 short chain dehydroge 71.5 26 0.00055 33.3 9.1 79 333-414 8-96 (258)
319 PRK07102 short chain dehydroge 71.2 25 0.00054 33.2 8.9 77 336-414 3-86 (243)
320 PRK08945 putative oxoacyl-(acy 71.2 18 0.00039 34.3 7.9 82 331-414 9-102 (247)
321 COG1063 Tdh Threonine dehydrog 70.4 12 0.00026 38.2 6.9 47 330-377 165-212 (350)
322 PF04672 Methyltransf_19: S-ad 69.6 8 0.00017 38.2 5.1 62 335-397 70-133 (267)
323 PRK07523 gluconate 5-dehydroge 69.2 35 0.00075 32.5 9.5 80 333-415 9-98 (255)
324 PRK06197 short chain dehydroge 68.4 56 0.0012 32.2 11.1 80 333-413 15-104 (306)
325 cd05564 PTS_IIB_chitobiose_lic 68.0 11 0.00024 31.1 4.9 49 340-410 4-52 (96)
326 COG0863 DNA modification methy 68.0 13 0.00027 36.6 6.3 50 330-382 219-268 (302)
327 PRK06914 short chain dehydroge 68.0 34 0.00073 33.1 9.2 85 334-419 3-96 (280)
328 PRK05599 hypothetical protein; 66.9 25 0.00055 33.5 8.0 75 336-412 2-85 (246)
329 PRK08085 gluconate 5-dehydroge 66.7 43 0.00092 31.8 9.5 81 333-416 8-98 (254)
330 TIGR00853 pts-lac PTS system, 66.3 14 0.00031 30.4 5.2 53 335-410 4-56 (95)
331 PRK12384 sorbitol-6-phosphate 65.9 37 0.00081 32.3 9.0 81 334-415 2-92 (259)
332 PRK12429 3-hydroxybutyrate deh 65.5 36 0.00077 32.2 8.7 78 334-414 4-91 (258)
333 KOG1562 Spermidine synthase [A 65.4 9 0.0002 38.4 4.4 79 333-412 121-203 (337)
334 COG4301 Uncharacterized conser 65.3 39 0.00084 33.2 8.5 67 328-396 73-144 (321)
335 PRK09880 L-idonate 5-dehydroge 65.2 31 0.00068 34.7 8.7 52 329-385 165-217 (343)
336 PRK07576 short chain dehydroge 65.0 29 0.00062 33.5 8.0 77 333-412 8-94 (264)
337 PRK07831 short chain dehydroge 64.8 43 0.00093 32.0 9.2 80 333-413 16-106 (262)
338 KOG1197 Predicted quinone oxid 64.4 22 0.00048 35.1 6.7 65 325-394 138-203 (336)
339 PRK07666 fabG 3-ketoacyl-(acyl 64.0 54 0.0012 30.7 9.6 79 334-415 7-95 (239)
340 cd08254 hydroxyacyl_CoA_DH 6-h 63.4 30 0.00065 34.1 8.0 51 329-385 161-212 (338)
341 PRK07814 short chain dehydroge 62.5 45 0.00097 32.0 8.8 77 333-412 9-95 (263)
342 PRK12939 short chain dehydroge 61.7 47 0.001 31.1 8.7 77 333-412 6-92 (250)
343 PRK08703 short chain dehydroge 61.2 33 0.00071 32.3 7.5 80 333-414 5-97 (239)
344 TIGR01963 PHB_DH 3-hydroxybuty 60.5 64 0.0014 30.3 9.4 79 336-417 3-91 (255)
345 PRK06139 short chain dehydroge 59.5 62 0.0013 32.7 9.6 84 333-419 6-99 (330)
346 TIGR03201 dearomat_had 6-hydro 58.8 31 0.00067 34.8 7.3 50 329-384 162-212 (349)
347 COG5379 BtaA S-adenosylmethion 58.8 19 0.0004 36.2 5.2 67 310-379 39-106 (414)
348 PRK06138 short chain dehydroge 58.5 58 0.0013 30.6 8.8 81 334-418 5-95 (252)
349 PRK10309 galactitol-1-phosphat 58.4 47 0.001 33.3 8.5 83 328-417 155-239 (347)
350 PRK07904 short chain dehydroge 58.1 34 0.00074 32.8 7.1 76 333-410 7-93 (253)
351 PRK07063 short chain dehydroge 58.0 76 0.0017 30.1 9.6 79 333-412 6-94 (260)
352 PRK06172 short chain dehydroge 56.8 58 0.0013 30.8 8.5 76 334-412 7-92 (253)
353 PRK07062 short chain dehydroge 56.8 78 0.0017 30.2 9.5 81 333-414 7-97 (265)
354 cd08237 ribitol-5-phosphate_DH 56.6 23 0.0005 35.8 5.9 47 330-376 160-207 (341)
355 PRK05855 short chain dehydroge 56.4 67 0.0014 34.4 9.8 86 333-421 314-409 (582)
356 KOG2352 Predicted spermine/spe 56.4 5 0.00011 42.6 1.0 82 333-416 295-382 (482)
357 KOG2425 Nuclear protein involv 56.4 47 0.001 35.4 7.9 36 188-236 106-141 (599)
358 PF01488 Shikimate_DH: Shikima 56.4 32 0.0007 29.9 6.0 78 332-419 10-87 (135)
359 PRK08267 short chain dehydroge 55.3 47 0.001 31.6 7.6 75 336-415 3-88 (260)
360 cd05565 PTS_IIB_lactose PTS_II 55.2 23 0.00049 29.6 4.5 53 336-411 2-54 (99)
361 PRK06196 oxidoreductase; Provi 55.1 66 0.0014 31.9 8.9 76 333-415 25-110 (315)
362 PRK05867 short chain dehydroge 54.7 79 0.0017 30.0 9.0 79 333-414 8-96 (253)
363 PRK06940 short chain dehydroge 54.5 54 0.0012 31.9 8.0 75 336-414 4-86 (275)
364 PF02086 MethyltransfD12: D12 54.4 23 0.0005 34.0 5.2 39 333-374 20-58 (260)
365 PRK09590 celB cellobiose phosp 54.2 34 0.00074 28.8 5.5 53 336-410 3-56 (104)
366 PRK05786 fabG 3-ketoacyl-(acyl 54.0 69 0.0015 29.9 8.4 76 333-412 4-89 (238)
367 TIGR03366 HpnZ_proposed putati 53.9 54 0.0012 31.9 7.9 52 328-384 115-167 (280)
368 PRK08114 cystathionine beta-ly 53.8 51 0.0011 34.5 7.9 88 331-420 74-163 (395)
369 cd08239 THR_DH_like L-threonin 53.5 54 0.0012 32.7 8.0 53 326-385 156-211 (339)
370 PRK08217 fabG 3-ketoacyl-(acyl 53.4 72 0.0016 29.9 8.5 78 333-413 4-91 (253)
371 TIGR02415 23BDH acetoin reduct 53.4 57 0.0012 30.8 7.8 82 337-421 3-94 (254)
372 PRK07097 gluconate 5-dehydroge 53.3 99 0.0021 29.5 9.5 81 333-416 9-99 (265)
373 KOG2793 Putative N2,N2-dimethy 53.2 59 0.0013 31.8 7.7 43 333-378 86-128 (248)
374 PRK07533 enoyl-(acyl carrier p 52.7 58 0.0012 31.3 7.7 78 333-413 9-97 (258)
375 KOG4174 Uncharacterized conser 51.8 1.6E+02 0.0035 29.1 10.2 85 333-420 56-153 (282)
376 PRK07340 ornithine cyclodeamin 51.8 1.2E+02 0.0026 30.4 10.1 87 320-414 111-198 (304)
377 PRK07677 short chain dehydroge 51.7 1E+02 0.0023 29.1 9.3 78 334-414 1-88 (252)
378 PRK07109 short chain dehydroge 51.2 1.3E+02 0.0028 30.3 10.3 80 333-415 7-96 (334)
379 PRK07326 short chain dehydroge 51.1 51 0.0011 30.7 7.0 76 333-412 5-90 (237)
380 cd08230 glucose_DH Glucose deh 51.1 43 0.00094 33.8 6.9 48 331-384 170-221 (355)
381 PRK08339 short chain dehydroge 50.4 1.3E+02 0.0027 29.0 9.8 78 333-412 7-93 (263)
382 cd08281 liver_ADH_like1 Zinc-d 50.2 60 0.0013 33.0 7.8 53 328-385 186-239 (371)
383 COG3510 CmcI Cephalosporin hyd 50.2 19 0.00041 34.0 3.5 60 331-396 67-129 (237)
384 PRK05717 oxidoreductase; Valid 50.1 62 0.0013 30.8 7.5 77 333-415 9-95 (255)
385 PLN02989 cinnamyl-alcohol dehy 50.0 47 0.001 32.9 6.9 79 333-412 4-85 (325)
386 TIGR03206 benzo_BadH 2-hydroxy 49.9 1.2E+02 0.0026 28.4 9.4 80 334-416 3-92 (250)
387 cd05188 MDR Medium chain reduc 49.3 63 0.0014 30.4 7.4 44 331-376 132-176 (271)
388 cd08294 leukotriene_B4_DH_like 49.3 69 0.0015 31.5 7.9 53 327-385 137-191 (329)
389 cd08232 idonate-5-DH L-idonate 49.1 82 0.0018 31.2 8.5 46 329-375 161-207 (339)
390 PRK08643 acetoin reductase; Va 48.7 99 0.0021 29.2 8.7 75 335-412 3-87 (256)
391 PRK12771 putative glutamate sy 48.5 65 0.0014 35.2 8.1 37 330-367 133-169 (564)
392 KOG3178 Hydroxyindole-O-methyl 48.3 54 0.0012 33.6 6.8 60 327-394 167-230 (342)
393 PRK07774 short chain dehydroge 48.2 98 0.0021 29.0 8.5 80 333-415 5-94 (250)
394 PRK07454 short chain dehydroge 47.7 89 0.0019 29.2 8.1 76 334-412 6-91 (241)
395 PRK10310 PTS system galactitol 47.7 58 0.0013 26.6 5.9 53 340-413 7-59 (94)
396 PLN02540 methylenetetrahydrofo 47.5 40 0.00086 37.0 6.1 61 334-395 28-98 (565)
397 PLN02740 Alcohol dehydrogenase 47.5 75 0.0016 32.5 8.1 51 328-385 193-246 (381)
398 cd05285 sorbitol_DH Sorbitol d 47.2 79 0.0017 31.6 8.0 54 327-385 156-210 (343)
399 PRK09424 pntA NAD(P) transhydr 47.1 40 0.00087 36.5 6.1 104 272-384 99-210 (509)
400 PRK07067 sorbitol dehydrogenas 47.0 1E+02 0.0022 29.2 8.4 75 334-414 6-90 (257)
401 PRK08263 short chain dehydroge 46.9 1.1E+02 0.0023 29.6 8.7 81 334-420 3-93 (275)
402 PLN02662 cinnamyl-alcohol dehy 46.9 65 0.0014 31.7 7.3 81 334-415 4-87 (322)
403 PRK06125 short chain dehydroge 46.5 1.6E+02 0.0035 27.9 9.8 77 334-412 7-89 (259)
404 KOG2920 Predicted methyltransf 46.3 17 0.00037 36.1 2.9 38 333-372 116-153 (282)
405 PRK12829 short chain dehydroge 46.1 1E+02 0.0022 29.2 8.2 80 329-413 6-95 (264)
406 PRK07024 short chain dehydroge 45.7 46 0.00099 31.7 5.8 74 335-412 3-86 (257)
407 PRK11524 putative methyltransf 45.5 27 0.00059 34.6 4.2 29 387-415 9-38 (284)
408 cd01065 NAD_bind_Shikimate_DH 45.3 94 0.002 27.0 7.3 74 333-416 18-93 (155)
409 COG1748 LYS9 Saccharopine dehy 45.2 46 0.00099 34.8 5.9 73 335-414 2-78 (389)
410 PRK06124 gluconate 5-dehydroge 45.1 2E+02 0.0044 27.0 10.2 78 333-413 10-97 (256)
411 TIGR01832 kduD 2-deoxy-D-gluco 45.0 1.4E+02 0.003 28.0 9.0 78 333-415 4-91 (248)
412 COG0300 DltE Short-chain dehyd 44.9 1.8E+02 0.0039 28.8 9.7 83 333-421 5-98 (265)
413 PRK05876 short chain dehydroge 44.8 1.9E+02 0.0042 28.0 10.2 84 333-419 5-98 (275)
414 PRK08063 enoyl-(acyl carrier p 44.6 1.3E+02 0.0027 28.3 8.6 79 334-415 4-93 (250)
415 PRK07453 protochlorophyllide o 44.5 1.1E+02 0.0023 30.5 8.5 78 333-413 5-92 (322)
416 PF02636 Methyltransf_28: Puta 44.5 27 0.00058 33.9 3.9 47 334-380 19-72 (252)
417 PRK09135 pteridine reductase; 44.4 1.3E+02 0.0029 27.9 8.7 79 333-413 5-94 (249)
418 PLN02780 ketoreductase/ oxidor 44.1 76 0.0017 31.8 7.3 61 334-395 53-114 (320)
419 PRK06720 hypothetical protein; 43.7 1.5E+02 0.0032 26.9 8.5 79 333-414 15-103 (169)
420 PRK12826 3-ketoacyl-(acyl-carr 43.3 1.7E+02 0.0037 27.2 9.3 80 334-416 6-95 (251)
421 PRK06141 ornithine cyclodeamin 43.1 2.1E+02 0.0044 28.8 10.2 84 320-410 111-195 (314)
422 PRK00258 aroE shikimate 5-dehy 43.0 1.4E+02 0.0031 29.3 8.9 75 333-420 122-198 (278)
423 PRK08278 short chain dehydroge 42.9 1.1E+02 0.0023 29.6 8.0 82 333-417 5-103 (273)
424 cd08255 2-desacetyl-2-hydroxye 42.9 83 0.0018 30.1 7.2 49 327-376 91-140 (277)
425 cd01078 NAD_bind_H4MPT_DH NADP 42.7 1.5E+02 0.0033 27.1 8.6 46 333-379 27-73 (194)
426 PRK05993 short chain dehydroge 41.7 1.4E+02 0.003 28.9 8.6 70 334-412 4-84 (277)
427 KOG3350 Uncharacterized conser 41.7 87 0.0019 29.2 6.4 97 314-426 53-157 (217)
428 PRK09242 tropinone reductase; 41.3 2.7E+02 0.0059 26.2 10.5 79 333-412 8-96 (257)
429 KOG3201 Uncharacterized conser 41.3 23 0.0005 32.5 2.6 82 333-416 29-114 (201)
430 PRK06113 7-alpha-hydroxysteroi 41.2 2E+02 0.0042 27.2 9.4 80 333-415 10-99 (255)
431 PRK09291 short chain dehydroge 41.1 2.3E+02 0.005 26.5 9.9 76 335-413 3-82 (257)
432 PRK08594 enoyl-(acyl carrier p 40.7 1.1E+02 0.0023 29.4 7.5 79 333-412 6-95 (257)
433 PRK12859 3-ketoacyl-(acyl-carr 40.7 1.8E+02 0.0038 27.7 9.0 83 333-417 5-109 (256)
434 KOG1209 1-Acyl dihydroxyaceton 40.4 82 0.0018 30.4 6.2 77 334-417 7-96 (289)
435 PF05206 TRM13: Methyltransfer 40.2 83 0.0018 31.0 6.6 41 332-372 17-61 (259)
436 PRK07231 fabG 3-ketoacyl-(acyl 40.0 1.4E+02 0.0031 27.8 8.2 78 334-415 5-92 (251)
437 PLN02253 xanthoxin dehydrogena 39.7 1.1E+02 0.0024 29.5 7.5 76 334-413 18-103 (280)
438 PRK05866 short chain dehydroge 39.5 2.6E+02 0.0055 27.5 10.2 76 334-412 40-125 (293)
439 cd08238 sorbose_phosphate_red 39.3 61 0.0013 33.7 5.9 49 329-377 171-222 (410)
440 PRK07890 short chain dehydroge 39.2 1.7E+02 0.0036 27.6 8.6 77 333-412 4-90 (258)
441 COG4017 Uncharacterized protei 39.0 69 0.0015 30.3 5.4 50 325-377 36-86 (254)
442 PRK08277 D-mannonate oxidoredu 38.9 1.6E+02 0.0034 28.4 8.4 76 334-412 10-95 (278)
443 KOG0919 C-5 cytosine-specific 38.4 42 0.00091 32.8 4.0 84 335-426 4-91 (338)
444 PF03721 UDPG_MGDP_dh_N: UDP-g 38.4 22 0.00047 33.0 2.1 34 343-376 7-41 (185)
445 PF10752 DUF2533: Protein of u 38.4 41 0.00089 27.0 3.3 42 161-203 21-62 (84)
446 PRK08415 enoyl-(acyl carrier p 38.3 1.6E+02 0.0034 28.7 8.3 78 333-413 4-92 (274)
447 TIGR03589 PseB UDP-N-acetylglu 38.3 1.3E+02 0.0028 30.1 7.9 75 334-413 4-83 (324)
448 TIGR03451 mycoS_dep_FDH mycoth 38.3 1.1E+02 0.0024 30.8 7.6 52 328-384 171-223 (358)
449 COG0169 AroE Shikimate 5-dehyd 38.3 1.8E+02 0.004 29.0 8.8 81 333-422 125-205 (283)
450 PRK06482 short chain dehydroge 38.2 1.1E+02 0.0023 29.4 7.2 74 336-415 4-87 (276)
451 cd08293 PTGR2 Prostaglandin re 38.1 1.3E+02 0.0027 30.0 7.8 52 330-385 149-204 (345)
452 PF09848 DUF2075: Uncharacteri 37.8 51 0.0011 33.6 5.0 44 337-381 5-54 (352)
453 PRK05650 short chain dehydroge 37.6 2.2E+02 0.0048 27.2 9.2 74 336-412 2-85 (270)
454 PRK06182 short chain dehydroge 37.4 1.5E+02 0.0033 28.4 8.0 71 334-413 3-83 (273)
455 PF06460 NSP13: Coronavirus NS 37.3 74 0.0016 31.5 5.6 68 331-413 59-130 (299)
456 cd08300 alcohol_DH_class_III c 37.3 1.5E+02 0.0033 30.0 8.5 53 328-385 181-234 (368)
457 PRK12748 3-ketoacyl-(acyl-carr 37.3 1.7E+02 0.0037 27.7 8.3 76 334-412 5-103 (256)
458 PLN02896 cinnamyl-alcohol dehy 36.9 1.3E+02 0.0029 30.2 7.9 81 334-418 10-93 (353)
459 PRK06114 short chain dehydroge 36.8 1.8E+02 0.004 27.5 8.4 77 334-413 8-95 (254)
460 PRK06181 short chain dehydroge 36.7 1.8E+02 0.0039 27.5 8.4 75 335-412 2-86 (263)
461 PRK07832 short chain dehydroge 36.6 1.7E+02 0.0038 28.0 8.4 71 342-413 7-87 (272)
462 PF01408 GFO_IDH_MocA: Oxidore 36.4 1.3E+02 0.0027 24.9 6.4 70 336-415 2-73 (120)
463 TIGR03499 FlhF flagellar biosy 36.3 70 0.0015 31.7 5.5 76 335-413 195-281 (282)
464 cd08296 CAD_like Cinnamyl alco 36.3 1.4E+02 0.0031 29.6 7.9 52 327-384 157-209 (333)
465 PRK05854 short chain dehydroge 36.3 4.4E+02 0.0095 26.1 11.6 79 334-413 14-102 (313)
466 PRK11908 NAD-dependent epimera 36.0 1.7E+02 0.0038 29.2 8.5 83 336-426 3-90 (347)
467 cd01492 Aos1_SUMO Ubiquitin ac 35.7 1.7E+02 0.0037 27.3 7.8 75 334-410 21-116 (197)
468 cd02042 ParA ParA and ParB of 35.4 50 0.0011 26.8 3.7 13 405-417 40-52 (104)
469 PRK09072 short chain dehydroge 35.4 2.6E+02 0.0057 26.5 9.4 77 334-414 5-90 (263)
470 COG0604 Qor NADPH:quinone redu 35.4 1.3E+02 0.0029 30.4 7.5 59 329-393 138-198 (326)
471 PRK08618 ornithine cyclodeamin 35.3 3.4E+02 0.0073 27.4 10.4 87 320-413 113-201 (325)
472 KOG3045 Predicted RNA methylas 35.3 52 0.0011 32.6 4.1 62 326-410 172-234 (325)
473 PLN00015 protochlorophyllide r 35.1 1.2E+02 0.0026 30.0 7.0 72 340-413 2-84 (308)
474 PRK09496 trkA potassium transp 35.0 1E+02 0.0022 32.3 6.8 74 333-414 230-307 (453)
475 PF05711 TylF: Macrocin-O-meth 34.8 1E+02 0.0022 30.2 6.2 81 332-412 73-185 (248)
476 PRK10669 putative cation:proto 34.8 71 0.0015 34.9 5.7 69 335-413 418-490 (558)
477 PRK05565 fabG 3-ketoacyl-(acyl 34.6 1.5E+02 0.0034 27.4 7.5 79 334-415 5-94 (247)
478 TIGR02822 adh_fam_2 zinc-bindi 34.5 1.3E+02 0.0029 30.0 7.4 53 327-385 159-212 (329)
479 PF02719 Polysacc_synt_2: Poly 34.4 1.1E+02 0.0023 30.9 6.4 85 341-425 4-98 (293)
480 PRK05653 fabG 3-ketoacyl-(acyl 34.3 1.6E+02 0.0035 27.2 7.5 78 334-414 5-92 (246)
481 PRK07060 short chain dehydroge 34.3 1.8E+02 0.004 27.0 7.9 78 333-418 8-91 (245)
482 cd08277 liver_alcohol_DH_like 34.2 1.7E+02 0.0038 29.5 8.3 51 328-385 179-232 (365)
483 COG0569 TrkA K+ transport syst 34.2 1E+02 0.0022 29.5 6.1 66 337-410 3-72 (225)
484 PLN03154 putative allyl alcoho 34.0 1.2E+02 0.0026 30.6 7.0 53 328-385 153-207 (348)
485 PRK07478 short chain dehydroge 33.9 3.3E+02 0.0072 25.5 9.7 79 334-415 6-94 (254)
486 KOG1201 Hydroxysteroid 17-beta 33.7 1.7E+02 0.0037 29.4 7.6 74 333-412 37-122 (300)
487 PRK06823 ornithine cyclodeamin 33.7 3.9E+02 0.0085 26.9 10.5 84 320-410 114-198 (315)
488 PRK05872 short chain dehydroge 33.6 2.8E+02 0.006 27.2 9.4 79 333-415 8-96 (296)
489 PRK06500 short chain dehydroge 33.6 3E+02 0.0064 25.6 9.3 76 334-415 6-91 (249)
490 PF00106 adh_short: short chai 33.5 1.5E+02 0.0033 25.7 6.8 82 337-421 3-97 (167)
491 PRK12475 thiamine/molybdopteri 33.2 1.6E+02 0.0035 30.0 7.7 75 334-410 24-122 (338)
492 PLN00203 glutamyl-tRNA reducta 33.1 1.8E+02 0.004 31.6 8.4 65 312-378 242-310 (519)
493 TIGR02356 adenyl_thiF thiazole 33.1 1.9E+02 0.0041 27.0 7.6 75 334-410 21-117 (202)
494 PRK07791 short chain dehydroge 32.9 3.6E+02 0.0078 26.2 10.0 78 333-413 5-101 (286)
495 COG4221 Short-chain alcohol de 32.8 1.7E+02 0.0036 28.6 7.2 76 335-415 7-92 (246)
496 PRK07775 short chain dehydroge 32.6 3.2E+02 0.007 26.2 9.5 77 335-414 11-97 (274)
497 PF02423 OCD_Mu_crystall: Orni 32.3 2.9E+02 0.0063 27.7 9.3 90 320-419 114-204 (313)
498 PRK06198 short chain dehydroge 32.1 2.7E+02 0.0059 26.2 8.8 80 333-415 5-95 (260)
499 KOG3924 Putative protein methy 32.1 78 0.0017 33.1 5.1 93 318-411 177-279 (419)
500 PRK08340 glucose-1-dehydrogena 32.1 2.9E+02 0.0064 26.1 9.1 74 336-413 2-85 (259)
No 1
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=6.4e-69 Score=561.86 Aligned_cols=368 Identities=35% Similarity=0.516 Sum_probs=321.3
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHhhcCCCCCCCcchhhhhhhccCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 012783 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (456)
Q Consensus 59 ~aR~~A~~~L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~~~~ 138 (456)
++|+.|+++||+++. +.+++.+++.. +....++++|++|+++|||||+|++..||++|+++++
T Consensus 2 ~~R~~A~~~L~~i~~-~~~~~~~l~~~----------------~~~~~l~~~dr~~~~~lv~gvlr~~~~lD~~i~~~~~ 64 (434)
T PRK14901 2 NARQLAWEILQAVAR-GAYADVALERV----------------LRKYPLSGADRALVTELVYGCIRRRRTLDAWIDQLGK 64 (434)
T ss_pred CHHHHHHHHHHHHHc-CCchHHHHHHH----------------HHhcCCChhHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Confidence 479999999999988 47777766542 1234588999999999999999999999999999987
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHhhhcCC-CCCCCcccCCc
Q 012783 139 DEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNN-SLPLPKLEGND 216 (456)
Q Consensus 139 ~~~~~~~l~~~~~~iLrlg~yell~~~-~p~~a~inE~V~lak~~~~~~~~~fVNaVLr~i~r~~~~~-~~~~~~~~~~~ 216 (456)
|++.++++++++|||||+|||+|++ +|++++|||+|++||.++.+..++|||||||++.+..+.. ..+.+
T Consensus 65 --~~~~~l~~~~r~iLrla~yel~~~~~~p~~aavneaVelak~~~~~~~~~fVNgVLr~~~r~~~~~~~~~~~------ 136 (434)
T PRK14901 65 --KPAHKQPPDLRWLLHLGLYQLRYMDRIPASAAVNTTVELAKQNGLGGLAGVVNGILRQYLRAREAGDPLPLP------ 136 (434)
T ss_pred --CChhhcCHHHHHHHHHHHHHHHhCccCCcHHHHHHHHHHHHHcCchhhhhhcCHHHHHHHHhhhccccccCC------
Confidence 6678899999999999999999997 8999999999999999998889999999999999964321 11111
Q ss_pred hHHHHHHHHHhCChHHHHHHHHHhcCHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEE
Q 012783 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIR 296 (456)
Q Consensus 217 ~~~~~~la~~~s~P~wlv~~~~~~~g~~~~~~~l~~~~~~~p~~lRvN~~k~~s~~~~~~~L~~~gi~~~~~~~~~~~~~ 296 (456)
....+.+++.||+|.||+++|.+.||.+++++++++++.++|+++|||+++ ++++++.+.|++.|+.++..+++++.++
T Consensus 137 ~~~~~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~k-~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 215 (434)
T PRK14901 137 EDPIERLAILHSFPDWLVKLWLEWLGLEEAEQLCKWFNQPPSLDLRINPLR-TSLEEVQAALAEAGITATPIPGLPQGLR 215 (434)
T ss_pred cChHHHHHHHhCCcHHHHHHHHHHhCHHHHHHHHHHhCCCCCeEEEECCCC-CCHHHHHHHHHHCCCceEECCCCCCeEE
Confidence 123567999999999999999999999999999999999999999999999 7999999999999999999999999998
Q ss_pred EeCCCcchhcccccccccccccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q 012783 297 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 376 (456)
Q Consensus 297 i~~~~~~~~~~~~~~~G~~~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~ 376 (456)
+......+...+.|++|.+++||.+|++++..+++++|++|||+|||||+||+++++.+++.|+|+|+|++++|++.+++
T Consensus 216 ~~~~~~~~~~~~~f~~g~~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~ 295 (434)
T PRK14901 216 LTGNPGSIRQLPGYEEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQE 295 (434)
T ss_pred ecCCCCccccChHHhCCeEEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHH
Confidence 87532246677899999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHcCCCceEEEEecccccccc---cCCCCccEEEEcCCCCCCcccccCCCccccccccchhhhhhchHhHHHHHHHhh
Q 012783 377 TAKLHQVNSVIRTIHADLRTFAD---NSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKY 453 (456)
Q Consensus 377 n~~r~g~~~~V~~~~~Da~~~~~---~~~~~fD~VllDaPCSg~G~irr~p~~~~~wr~~~~~~~~~~~~~~~~l~~~~~ 453 (456)
|++++|+.+ |+++++|+..++. ...++||.|++||||||+|+++|+||+ +|+. +...+.....+|..|...++
T Consensus 296 n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~--~~~~-~~~~~~~l~~~Q~~iL~~a~ 371 (434)
T PRK14901 296 NAQRLGLKS-IKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDA--RWRQ-TPEKIQELAPLQAELLESLA 371 (434)
T ss_pred HHHHcCCCe-EEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcch--hhhC-CHHHHHHHHHHHHHHHHHHH
Confidence 999999987 8999999987652 123689999999999999999999998 6764 34455666677888888877
Q ss_pred hcC
Q 012783 454 LLL 456 (456)
Q Consensus 454 ~ll 456 (456)
.+|
T Consensus 372 ~~l 374 (434)
T PRK14901 372 PLL 374 (434)
T ss_pred Hhc
Confidence 664
No 2
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=3.8e-67 Score=546.86 Aligned_cols=352 Identities=29% Similarity=0.442 Sum_probs=310.8
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHhhcCCCCCCCcchhhhhhhccCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 012783 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (456)
Q Consensus 59 ~aR~~A~~~L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~~~~ 138 (456)
++|++|+.+|+++..++.+++.+++.. +. .++++|++|+++|||||+|++..||++|+++++
T Consensus 4 ~~R~~A~~~L~~v~~~~~~~~~~l~~~----------------~~--~l~~~d~~~~~~lv~gvlr~~~~lD~~i~~~~~ 65 (431)
T PRK14903 4 NVRLLAYRLLRKYEKEKFIFREDVDSV----------------LS--FLDDKDRRFFKELVWGVVRKEELLDWYINQLLK 65 (431)
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHH----------------HH--hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 479999999999999998888766542 12 589999999999999999999999999999998
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHhhhcCCCCCCCcccCCch
Q 012783 139 DEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217 (456)
Q Consensus 139 ~~~~~~~l~~~~~~iLrlg~yell~~~-~p~~a~inE~V~lak~~~~~~~~~fVNaVLr~i~r~~~~~~~~~~~~~~~~~ 217 (456)
+ | +++++++++||+|+|||+|++ +|++++|||+|++||.+ +.++|||||||++.++. +
T Consensus 66 ~-~---~l~~~~r~iLr~~~yel~~~~~~p~~aavneaV~lak~~---~~~~fVNaVLr~~~r~~-----~--------- 124 (431)
T PRK14903 66 K-K---DIPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVKNE---NFKKLVNAVLRRLRTVP-----E--------- 124 (431)
T ss_pred C-C---CCCHHHHHHHHHHHHHHHhccCCCcceeHHHHHHHHhcc---chHHHHHHHHHHHHHhh-----c---------
Confidence 6 5 589999999999999999998 79999999999999985 56799999999999841 1
Q ss_pred HHHHHHHHHhCChHHHHHHHHHhcCHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEE
Q 012783 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRV 297 (456)
Q Consensus 218 ~~~~~la~~~s~P~wlv~~~~~~~g~~~~~~~l~~~~~~~p~~lRvN~~k~~s~~~~~~~L~~~gi~~~~~~~~~~~~~i 297 (456)
.+++++.||+|.||+++|.+.||.++++++++++++++|+++|||+++ ++++++.+.|++.|+.++++++.+..+++
T Consensus 125 --~~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~RvN~~k-~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 201 (431)
T PRK14903 125 --PKELHLKYSHPKWLVNYWRSFLPEEAVLRIMEWNQEPLPTMLRVNSLA-ITREEVIKILAEEGTEAVPGKHSPFSLIV 201 (431)
T ss_pred --chhhhhhhcCcHHHHHHHHHHcCHHHHHHHHHHhcCCCCeeEEeeCCc-CCHHHHHHHHHHCCCeeEECCCCCceEEE
Confidence 035789999999999999999999999999999999999999999999 69999999999999999999999988888
Q ss_pred eCCCcchhcccccccccccccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q 012783 298 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET 377 (456)
Q Consensus 298 ~~~~~~~~~~~~~~~G~~~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n 377 (456)
......+..++.|++|++++||.+|++++.++++++|++|||+|||||+||+++++.+++.|+|+|+|++++|++.+++|
T Consensus 202 ~~~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n 281 (431)
T PRK14903 202 RKLGVNMNDSRVIKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKH 281 (431)
T ss_pred cCCCCCcccChHHHCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHH
Confidence 75322466778999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred HHHcCCCceEEEEecccccccccCCCCccEEEEcCCCCCCcccccCCCccccccccchhhhhhchHhHHHHHHHhhhcC
Q 012783 378 AKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456 (456)
Q Consensus 378 ~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllDaPCSg~G~irr~p~~~~~wr~~~~~~~~~~~~~~~~l~~~~~~ll 456 (456)
++++|+.+ |.++++|+..++....++||+|++||||||+|+++++||+ +|+.. .........+|..|...++.+|
T Consensus 282 ~~r~g~~~-v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~--~~~~~-~~~~~~l~~~Q~~iL~~a~~~L 356 (431)
T PRK14903 282 AKRLKLSS-IEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEV--LRRVN-KEDFKKLSEIQLRIVSQAWKLL 356 (431)
T ss_pred HHHcCCCe-EEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHH--HHhCC-HHHHHHHHHHHHHHHHHHHHhc
Confidence 99999986 8999999987653334689999999999999999999998 44432 3355566667788887777654
No 3
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=5e-65 Score=531.49 Aligned_cols=359 Identities=27% Similarity=0.387 Sum_probs=313.7
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHhhcCCCCCCCcchhhhhhhccCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 012783 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (456)
Q Consensus 59 ~aR~~A~~~L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~~~~ 138 (456)
++|+.|+++||+++.++.+++.++... + ..++++|++|+++|||||++|+..||++|+++++
T Consensus 3 ~~R~~a~~~L~~~~~~~~~~~~~l~~~----------------~--~~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~~~~ 64 (427)
T PRK10901 3 NLRALAAAAILQVVDQGQSLSAALPAL----------------Q--QKVSDKDRALLQELCYGVLRRLPRLEWLIAQLLA 64 (427)
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHHHHH----------------H--hhCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 489999999999999999888776542 1 1478899999999999999999999999999997
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHhhhcCCCCCCCcccCCchH
Q 012783 139 DEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRA 218 (456)
Q Consensus 139 ~~~~~~~l~~~~~~iLrlg~yell~~~~p~~a~inE~V~lak~~~~~~~~~fVNaVLr~i~r~~~~~~~~~~~~~~~~~~ 218 (456)
|+++++++++++|||||+|||+|+++|++++|||+|++||++++++.++|||||||++.+..+. . . +.
T Consensus 65 --~~~~~l~~~~r~iLrla~yell~~~iP~~a~vneaVelak~~~~~~~~~fVNaVLr~i~~~~~~-~-~-~~------- 132 (427)
T PRK10901 65 --KPLKGKQRIVHALLLVGLYQLLYTRIPAHAAVDETVEAAKALKRPWAKGLVNAVLRRFQREQEE-L-L-AE------- 132 (427)
T ss_pred --CCccccCHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHhcCCccchhhHHHHHHHhhhhhhh-h-h-hh-------
Confidence 6789999999999999999999999999999999999999999999999999999999985331 1 1 10
Q ss_pred HHHHHHHHhCChHHHHHHHHHhcCHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEEe
Q 012783 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVK 298 (456)
Q Consensus 219 ~~~~la~~~s~P~wlv~~~~~~~g~~~~~~~l~~~~~~~p~~lRvN~~k~~s~~~~~~~L~~~gi~~~~~~~~~~~~~i~ 298 (456)
....+++.||+|.||+++|.+.|| +++.++++++++++|+++|||+++ ++++++.+.|++.|+..++.++.++.+.+.
T Consensus 133 ~~~~~~~~~s~P~wl~~~~~~~~~-~~~~~~~~~~~~~~~~~~Rvn~~k-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 210 (427)
T PRK10901 133 LQADPVARYNHPSWLIKRLKKAYP-EQWQAILAANNQRPPMWLRVNRRH-HSRDAYLALLAEAGIEAFPHAVGPDAIRLE 210 (427)
T ss_pred hhhchHhHhcCCHHHHHHHHHHhH-HHHHHHHHHcCCCCCeEEEEcCCC-CCHHHHHHHHHhCCCceeecCCCCCeEEEC
Confidence 124579999999999999999996 678899999999999999999999 699999999999999999999999998887
Q ss_pred CCCcchhcccccccccccccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHH
Q 012783 299 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA 378 (456)
Q Consensus 299 ~~~~~~~~~~~~~~G~~~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~ 378 (456)
.+. .+...++|++|.+++||.+|++++..+++++|++|||+|||||++|+++++.+++ ++|+|+|+++.+++.+++|+
T Consensus 211 ~~~-~~~~~~~~~~G~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~ 288 (427)
T PRK10901 211 TPV-PVHQLPGFAEGWVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENL 288 (427)
T ss_pred CCC-CcccCchhhCceEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHH
Confidence 543 3667789999999999999999999999999999999999999999999998754 89999999999999999999
Q ss_pred HHcCCCceEEEEeccccccccc-CCCCccEEEEcCCCCCCcccccCCCccccccccchhhhhhchHhHHHHHHHhhhcC
Q 012783 379 KLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456 (456)
Q Consensus 379 ~r~g~~~~V~~~~~Da~~~~~~-~~~~fD~VllDaPCSg~G~irr~p~~~~~wr~~~~~~~~~~~~~~~~l~~~~~~ll 456 (456)
+++|+. ++++++|+..+... ..++||.|++||||||+|+++++||. +|.. +..........|+.+...++.+|
T Consensus 289 ~~~g~~--~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~--~~~~-~~~~l~~l~~~q~~iL~~a~~~L 362 (427)
T PRK10901 289 QRLGLK--ATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDI--KWLR-RPEDIAALAALQSEILDALWPLL 362 (427)
T ss_pred HHcCCC--eEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccc--cccC-CHHHHHHHHHHHHHHHHHHHHhc
Confidence 999986 57899999865432 23579999999999999999999998 6753 33444555567788887777665
No 4
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=100.00 E-value=1.3e-64 Score=528.31 Aligned_cols=356 Identities=29% Similarity=0.366 Sum_probs=307.5
Q ss_pred HHHHHHHHHHHHcCCCchHHHhhcCCCCCCCcchhhhhhhccCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccCC
Q 012783 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDE 140 (456)
Q Consensus 61 R~~A~~~L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~~~~~~ 140 (456)
|+.|+++||+++.++.+++.+... ...++++|++|+++|||||++|+..||++|+++++
T Consensus 1 R~~A~~~L~~~~~~~~~~~~~~~~-------------------~~~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~~~~-- 59 (426)
T TIGR00563 1 RSIAAQALEQLEQGQSLSNLLPPL-------------------QQKVSDQDRALLQELCFGVLRTLSQLDWLIKKLMD-- 59 (426)
T ss_pred CHHHHHHHHHHHcCCchHHHHHhh-------------------hcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC--
Confidence 789999999999999887776542 12478999999999999999999999999999997
Q ss_pred CCCCcccHHHHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHhhhcCCCCCCCcccCCchHH
Q 012783 141 KTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219 (456)
Q Consensus 141 ~~~~~l~~~~~~iLrlg~yell~~-~~p~~a~inE~V~lak~~~~~~~~~fVNaVLr~i~r~~~~~~~~~~~~~~~~~~~ 219 (456)
|++++++++++ +||+++||++|. ++|++++|||+|+|||++++++.++|||||||+++++.+. . . ..
T Consensus 60 ~~~~~l~~~~~-~L~~~~~e~l~~~~~p~~aainEaVelaK~~~~~~~~~fVNgVLr~i~r~~~~----~--~-----~~ 127 (426)
T TIGR00563 60 RPMKGKPRTVH-YLILVGLYQLLYTRIPAHAAVAETVEGAKAIKRKGLKGLVNGVLRRFQREQEE----L--L-----AE 127 (426)
T ss_pred CCccccCHHHH-HHHHHHHHHHhcCCCCCEehHHHHHHHHHhcCCccchhhHHHHHHHHhhcchh----h--c-----ch
Confidence 67888999877 888888887664 7999999999999999999999999999999999995321 0 0 12
Q ss_pred HHHHHHHhCChHHHHHHHHHhcCHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEEeC
Q 012783 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299 (456)
Q Consensus 220 ~~~la~~~s~P~wlv~~~~~~~g~~~~~~~l~~~~~~~p~~lRvN~~k~~s~~~~~~~L~~~gi~~~~~~~~~~~~~i~~ 299 (456)
.+++++.||+|.|++++|.+.|+ +++.++++++++++|+++|||+.+ ++++++.+.|++.|+..+++++.++.+++..
T Consensus 128 ~~~l~~~~s~P~wl~~~~~~~~~-~~~~~~l~~~~~~~~~~~Rvn~~k-~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 205 (426)
T TIGR00563 128 FNALDARYLHPEWLVKRLQKAYP-GQWQSICEANNQRPPMWLRINRTK-HSRDEWLALLAEAGMKGFPHDLAPDAVRLET 205 (426)
T ss_pred hHhHHHHcCCCHHHHHHHHHHhH-HHHHHHHHHhCCCCCeEEEEcCCc-CCHHHHHHHHHhcCCceeeCCCCCCeEEECC
Confidence 45799999999999999999996 567799999999999999999999 6999999999999999999999898888865
Q ss_pred CCcchhcccccccccccccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHH
Q 012783 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK 379 (456)
Q Consensus 300 ~~~~~~~~~~~~~G~~~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~ 379 (456)
+. .+...+.|++|++++||.+|++++..+++++|++|||+|||||+||+++++.++ .|+|+|+|+++++++.+++|++
T Consensus 206 ~~-~~~~~~~~~~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~ 283 (426)
T TIGR00563 206 PA-AVHALPGFEEGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLK 283 (426)
T ss_pred CC-CcccCchhhCCeEEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHH
Confidence 43 467788999999999999999999999999999999999999999999999986 7899999999999999999999
Q ss_pred HcCCCceEEEEeccccccccc-CCCCccEEEEcCCCCCCcccccCCCccccccccchhhhhhchHhHHHHHHHhhhcC
Q 012783 380 LHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456 (456)
Q Consensus 380 r~g~~~~V~~~~~Da~~~~~~-~~~~fD~VllDaPCSg~G~irr~p~~~~~wr~~~~~~~~~~~~~~~~l~~~~~~ll 456 (456)
++|+...+++..+|+...... ..++||.|++||||||+|+++++||+ +|+. +.....+...+|..|...++.+|
T Consensus 284 r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~--~~~~-~~~~~~~l~~lQ~~lL~~a~~~L 358 (426)
T TIGR00563 284 RLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDI--KWLR-KPRDIAELAELQSEILDAIWPLL 358 (426)
T ss_pred HcCCCeEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcch--hhcC-CHHHHHHHHHHHHHHHHHHHHhc
Confidence 999974455577787654321 23679999999999999999999998 6664 34455666678888888887765
No 5
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.8e-64 Score=530.04 Aligned_cols=365 Identities=32% Similarity=0.525 Sum_probs=320.8
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHhhcCCCCCCCcchhhhhhhccCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 012783 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (456)
Q Consensus 59 ~aR~~A~~~L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~~~~ 138 (456)
++|+.|+++||+++.++.+++.+++.. +....++++|++|+++||||+++++..||++|+++++
T Consensus 4 ~~R~~A~~~L~~~~~~~~~~~~~l~~~----------------~~~~~l~~~d~~~~~~lv~g~lr~~~~ld~~i~~~~~ 67 (444)
T PRK14902 4 NARELALEVLIKVENNGAYSNIALNKV----------------LKKSELSDKDKALLTELVYGTIQRKLTLDYYLAPFIK 67 (444)
T ss_pred cHHHHHHHHHHHHHhcCCCHHHHHHHH----------------HHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 589999999999999888887766542 1234688999999999999999999999999999997
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHhhhcCCCCCCCcccCCch
Q 012783 139 DEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217 (456)
Q Consensus 139 ~~~~~~~l~~~~~~iLrlg~yell~~~-~p~~a~inE~V~lak~~~~~~~~~fVNaVLr~i~r~~~~~~~~~~~~~~~~~ 217 (456)
+ ++++++++++|||+|+|||+|++ +|++++|||+|++||.|+++++++|||||||++.+..... .+.. .
T Consensus 68 --~-~~~l~~~~r~iLrla~~el~~~~~~p~~~~ineav~lak~~~~~~~~~fVNaVL~~i~~~~~~~---~~~~----~ 137 (444)
T PRK14902 68 --K-RKKLDPWVRNLLRMSLYQLLYLDKVPDHAAVNEAVEIAKKRGHKGIAKFVNGVLRNILREGLPD---IDEI----K 137 (444)
T ss_pred --h-hhhCCHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHhCCCchhHHHHHHHHHHhhccccc---cccc----c
Confidence 4 78999999999999999999986 9999999999999999999999999999999999853211 1111 1
Q ss_pred HHHHHHHHHhCChHHHHHHHHHhcCHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEE
Q 012783 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRV 297 (456)
Q Consensus 218 ~~~~~la~~~s~P~wlv~~~~~~~g~~~~~~~l~~~~~~~p~~lRvN~~k~~s~~~~~~~L~~~gi~~~~~~~~~~~~~i 297 (456)
++..++++.||+|.|++++|.+.||.+++.+++++++.++|+++|+|+.+ .+++++.+.|++.|+.+++.++.++.+.+
T Consensus 138 ~~~~~~~~~~~~P~w~~~~~~~~~g~~~~~~~l~~~~~~~~~~~Rvn~~k-~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 216 (444)
T PRK14902 138 DPVKRLSIKYSHPVWLVKRWIDQYGEEKAEKILESLNEPPKASIRVNTLK-ISVEELIEKLEEEGYEVEESLLSPEALVI 216 (444)
T ss_pred CHHHHHHHHhCChHHHHHHHHHHhCHHHHHHHHHHcCCCCCeEEEEcCCC-CCHHHHHHHHHHcCceeEEcCCCCCeEEE
Confidence 23567999999999999999999999999999999999999999999999 68999999999999999999999999988
Q ss_pred eCCCcchhcccccccccccccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q 012783 298 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET 377 (456)
Q Consensus 298 ~~~~~~~~~~~~~~~G~~~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n 377 (456)
..+ .+..++.|++|.+++||.+|++++..+++++|++|||+|||||++|+++++.+++.++|+|+|+++.+++.+++|
T Consensus 217 ~~~--~~~~~~~~~~G~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n 294 (444)
T PRK14902 217 EKG--NIAGTDLFKDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEEN 294 (444)
T ss_pred eCC--CcccChHHhCceEEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence 762 477789999999999999999999999999999999999999999999999987789999999999999999999
Q ss_pred HHHcCCCceEEEEecccccccccCCCCccEEEEcCCCCCCcccccCCCccccccccchhhhhhchHhHHHHHHHhhhcC
Q 012783 378 AKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456 (456)
Q Consensus 378 ~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllDaPCSg~G~irr~p~~~~~wr~~~~~~~~~~~~~~~~l~~~~~~ll 456 (456)
++++|+.+ |.++++|+..+.....+.||.|++||||||+|+++++|+. +|+. ...........|..+...++++|
T Consensus 295 ~~~~g~~~-v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~--~~~~-~~~~~~~l~~~q~~iL~~a~~~L 369 (444)
T PRK14902 295 AKRLGLTN-IETKALDARKVHEKFAEKFDKILVDAPCSGLGVIRRKPDI--KYNK-TKEDIESLQEIQLEILESVAQYL 369 (444)
T ss_pred HHHcCCCe-EEEEeCCcccccchhcccCCEEEEcCCCCCCeeeccCcch--hhcC-CHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999987 8999999987643333689999999999999999999998 6654 23344455567778888777664
No 6
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=5.6e-64 Score=526.18 Aligned_cols=364 Identities=30% Similarity=0.503 Sum_probs=311.0
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHhhcCCCCCCCcchhhhhhhccCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 012783 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (456)
Q Consensus 59 ~aR~~A~~~L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~~~~ 138 (456)
.+|+.|+++||+++.++.+++.++..+ ++...++++|++|+++|||||+|++..||++|+++++
T Consensus 3 ~~R~~A~~~L~~~~~~~~~~~~~l~~~----------------~~~~~l~~~dr~~~~~lv~gvlr~~~~lD~~i~~~~~ 66 (445)
T PRK14904 3 TARELALQVLQELETGERKSDTLLHRM----------------LERSSLERNDRALATELVNGVLRYRLQLDFIISRFYH 66 (445)
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHH----------------HHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 489999999999999998888776542 1234688999999999999999999999999999997
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHhhhcCCCCCCCcccCCch
Q 012783 139 DEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217 (456)
Q Consensus 139 ~~~~~~~l~~~~~~iLrlg~yell~~~-~p~~a~inE~V~lak~~~~~~~~~fVNaVLr~i~r~~~~~~~~~~~~~~~~~ 217 (456)
|++.+++++++++||+|+|||+|++ +|++++|||+|++||.++++.+++|||||||++++.........+ ..
T Consensus 67 --~~~~rl~~~~r~iLrla~~ell~~~~~p~~a~vneaVelak~~~~~~~~~fVNgVLr~i~~~~~~~~~~~~-----~~ 139 (445)
T PRK14904 67 --HDLEKAAPVLKNILRLGVYQLLFLDRVPRWAAVNECVKLARKYKGEHMAKLVNGVLRNISPETISLDEWLK-----GM 139 (445)
T ss_pred --CChhhCCHHHHHHHHHHHHHHHhCCCCCCeeeHHHHHHHHHHhCCCccccchHHHHHHHHHhhcccccccc-----cc
Confidence 7889999999999999999999996 899999999999999999999999999999999996422111111 01
Q ss_pred HHHHHHHHHhCChHHHHHHHHHhcCHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEE
Q 012783 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRV 297 (456)
Q Consensus 218 ~~~~~la~~~s~P~wlv~~~~~~~g~~~~~~~l~~~~~~~p~~lRvN~~k~~s~~~~~~~L~~~gi~~~~~~~~~~~~~i 297 (456)
...+.+++.||+|.||+++|.+.||.+++.+++++++.+|++++|||+++ .+++++.+.|+..|++.+..++. + +.+
T Consensus 140 ~~~~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~~-~~~~~~~~~l~~~~~~~~~~~~~-~-~~~ 216 (445)
T PRK14904 140 PEAERLSLLYSHPEWLLERWIARYGEERTEAMLSYNNQAPLFGFRINRLK-TTPEKFLAAPADASVTFEKSGLP-N-FFL 216 (445)
T ss_pred chHHHHHHHhCCCHHHHHHHHHHhChHHHHHHHHHhCCCCCceeEeCCCC-CCHHHHHHHHHhCCCceEEcCcc-e-EEE
Confidence 23457999999999999999999999999999999999999999999999 69999999999999988776643 3 444
Q ss_pred eCCCcchhcccccccccccccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q 012783 298 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET 377 (456)
Q Consensus 298 ~~~~~~~~~~~~~~~G~~~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n 377 (456)
..+. ....+.|.+|.+++||+++++++..+++.+|++|||+|||||+||+++++.+++.++|+|+|+++.+++.+++|
T Consensus 217 ~~~~--~~~~~~~~~G~~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~ 294 (445)
T PRK14904 217 SKDF--SLFEPFLKLGLVSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSH 294 (445)
T ss_pred eccc--cccChHHhCcEEEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHH
Confidence 4332 22237899999999999999999999999999999999999999999999988788999999999999999999
Q ss_pred HHHcCCCceEEEEecccccccccCCCCccEEEEcCCCCCCcccccCCCccccccccchhhhhhchHhHHHHHHHhhhcC
Q 012783 378 AKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456 (456)
Q Consensus 378 ~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllDaPCSg~G~irr~p~~~~~wr~~~~~~~~~~~~~~~~l~~~~~~ll 456 (456)
++++|+.+ |+++++|+..+.. .+.||+|++||||||+|+++|+||+ +|+.. ...++.....|..|...++.+|
T Consensus 295 ~~~~g~~~-v~~~~~Da~~~~~--~~~fD~Vl~D~Pcsg~g~~~r~p~~--~~~~~-~~~~~~l~~~q~~iL~~a~~~l 367 (445)
T PRK14904 295 ASALGITI-IETIEGDARSFSP--EEQPDAILLDAPCTGTGVLGRRAEL--RWKLT-PEKLAELVGLQAELLDHAASLL 367 (445)
T ss_pred HHHhCCCe-EEEEeCccccccc--CCCCCEEEEcCCCCCcchhhcCcch--hhcCC-HHHHHHHHHHHHHHHHHHHHhc
Confidence 99999975 8999999987652 3589999999999999999999998 66643 3344445566777777766654
No 7
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-48 Score=396.31 Aligned_cols=274 Identities=33% Similarity=0.459 Sum_probs=231.3
Q ss_pred CCChhHHHHHHHHHHhh-cCCCchhhHHHHHHHHHhhhcCCCCCCCcccCCchHHHHHHHHHhCChHHHHHHHHHhcCHH
Q 012783 166 MPPYAVVDENVRLAKVA-LRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQE 244 (456)
Q Consensus 166 ~p~~a~inE~V~lak~~-~~~~~~~fVNaVLr~i~r~~~~~~~~~~~~~~~~~~~~~~la~~~s~P~wlv~~~~~~~g~~ 244 (456)
+|++++++++|+.++.. ......+|+|++|+++.+........ .. .. ...|++|.|++++|.+.||.+
T Consensus 1 ~~~~a~~~~~~~~a~~~~~~~~~~~~~n~~lr~~~r~~~~~~~~---~~-------~~-~~~~~~p~w~~~~~~~~~~~~ 69 (355)
T COG0144 1 VPPHAAVDETVEAAKERLGKDRAAKFVNAVLRRLERSEEALLEE---IL-------RP-AFRYSHPEWLVEKLPDALGED 69 (355)
T ss_pred CCcHHHHHHHHHHHHhcccchhhhhhhhhhHhhhhhccchhhhh---hh-------cc-cccccCcHHHHHHHHHHcChH
Confidence 58999999999999954 66678899999999999865432110 00 00 157999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEEeCCCcchhcccccccccccccchHHHH
Q 012783 245 EAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL 324 (456)
Q Consensus 245 ~~~~~l~~~~~~~p~~lRvN~~k~~s~~~~~~~L~~~gi~~~~~~~~~~~~~i~~~~~~~~~~~~~~~G~~~vQd~ss~l 324 (456)
+++.++.+++.+++.++|||+++ .+.+++.+.|+..|+......+.+..+++..+. ++...++|.+|+|++||++||+
T Consensus 70 ~~~~~~~a~~~~~~~~~Rvn~lk-~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~G~~~vQd~sS~l 147 (355)
T COG0144 70 EAEAIAAALLRPPPRSLRVNTLK-ADVEELLEALEEAGVLDEKPWVLDEVLRIEASG-PIGRLPEFAEGLIYVQDEASQL 147 (355)
T ss_pred HHHHHHHHcCCCCCeeEEEcCcc-CCHHHHHHHHhhcccccccCCccccEEEecCCC-CcccChhhhceEEEEcCHHHHH
Confidence 99999999999999999999999 799999999999888766554445677776654 4667789999999999999999
Q ss_pred HHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceE-EEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCC-
Q 012783 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLV-YAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST- 402 (456)
Q Consensus 325 v~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V-~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~- 402 (456)
++.+|+++||++|||+||||||||+|||++|.+.|.+ +|+|+++.|++.+++|++|+|+.| +.+++.|+..++....
T Consensus 148 ~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 148 PALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPG 226 (355)
T ss_pred HHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccccccccc
Confidence 9999999999999999999999999999999886555 999999999999999999999998 7888889876654332
Q ss_pred -CCccEEEEcCCCCCCcccccCCCccccccccchhhhhhchHhHHHHHHHhhhcC
Q 012783 403 -VKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456 (456)
Q Consensus 403 -~~fD~VllDaPCSg~G~irr~p~~~~~wr~~~~~~~~~~~~~~~~l~~~~~~ll 456 (456)
++||+||+||||||+|+||||||++++|+.+. ..+.+.+|.+|..+++.+|
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~---i~~l~~lQ~~iL~~a~~~l 278 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPED---IAELAKLQKEILAAALKLL 278 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHH---HHHHHHHHHHHHHHHHHhc
Confidence 25999999999999999999999966666654 4445577888888888765
No 8
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=100.00 E-value=9.2e-44 Score=371.88 Aligned_cols=224 Identities=22% Similarity=0.273 Sum_probs=200.9
Q ss_pred CChHHHHHHHHHhcCH-HHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEEeCC---Ccc
Q 012783 228 SHPVWMVRRWTKYLGQ-EEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTG---LQN 303 (456)
Q Consensus 228 s~P~wlv~~~~~~~g~-~~~~~~l~~~~~~~p~~lRvN~~k~~s~~~~~~~L~~~gi~~~~~~~~~~~~~i~~~---~~~ 303 (456)
.+|.||+++|.+.||. +++++++++++++++.+||||++| ++.+++.+.|++.|+.+++.+|+++.+.+..+ ...
T Consensus 3 ~lP~~fv~~~~~~lg~~ee~~~~l~a~~~~~~~~lRvN~lK-~~~~~~~~~L~~~g~~~~~~p~~~~g~~~~~~~~~~~~ 81 (470)
T PRK11933 3 YLPDAFLTQMREAMPSHLSMDDFIAACQRPLRRSIRVNTLK-ISVADFLQLMAPYGWTLTPIPWCEEGFWIERDDEDALP 81 (470)
T ss_pred cChHHHHHHHHHHhCCcHHHHHHHHHcCCCCCeEEEEcCCc-CCHHHHHHHHHhCCCceeECCCCCceEEEecCccccCC
Confidence 5899999999999997 689999999999999999999999 69999999999999999999999998888643 113
Q ss_pred hhcccccccccccccchHHHHHHHhc--CCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHc
Q 012783 304 VIQAGLLKEGLCAVQDESAGLVVAVV--DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH 381 (456)
Q Consensus 304 ~~~~~~~~~G~~~vQd~ss~lv~~~l--~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~ 381 (456)
+...+.|..|.|++||++||+++.+| ++++|++|||+||||||||+++|++|++.|.|+|+|+++.|++.+++|++++
T Consensus 82 ~~~~~~~~~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~ 161 (470)
T PRK11933 82 LGNTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC 161 (470)
T ss_pred cccChHHHCCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 56788999999999999999999999 8899999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEecccccccccCCCCccEEEEcCCCCCCcccccCCCccccccccchhhhhhchHhHHHHHHHhhhcC
Q 012783 382 QVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456 (456)
Q Consensus 382 g~~~~V~~~~~Da~~~~~~~~~~fD~VllDaPCSg~G~irr~p~~~~~wr~~~~~~~~~~~~~~~~l~~~~~~ll 456 (456)
|+.| |.+++.|+..+.....+.||+||+||||||+|++||+||+..+|+.. .....+.+|..|...|+.+|
T Consensus 162 G~~n-v~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~---~v~~l~~lQ~~iL~~A~~~L 232 (470)
T PRK11933 162 GVSN-VALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPE---SNLEIAATQRELIESAFHAL 232 (470)
T ss_pred CCCe-EEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHH---HHHHHHHHHHHHHHHHHHHc
Confidence 9987 78899999876554456899999999999999999999996555554 44556678889998888765
No 9
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=100.00 E-value=1.3e-38 Score=317.95 Aligned_cols=345 Identities=29% Similarity=0.333 Sum_probs=259.9
Q ss_pred CCCCCcchhhhhhhccCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHhcCC
Q 012783 87 GSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDM 166 (456)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~~~~~~~~~~~l~~~~~~iLrlg~yell~~~~ 166 (456)
+++.+++.+...+.++...++++.+... .+-+++.++++...+........+.-......+.++.+++ +...+..
T Consensus 15 ~~~~~~e~~~~~~d~~~~~d~~~~~~~~-~e~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~l~lp~~~----~~~~~~~ 89 (460)
T KOG1122|consen 15 GSGSNPEVEDYFTDDFRDDDLDDIDLKL-IERKSRKLRKRESLEASEAEEELNTNTFEEGDPLLLPTLE----EEEEKDS 89 (460)
T ss_pred CCCCCccchhhhccccCccchhhhhhhh-hhhHHHHHHHhhcccchhhHHHHhhccccccccccCcccc----ccccccc
Confidence 3344455444434344455677777777 7889999999988887776644332233445555555555 4444453
Q ss_pred CChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHhhhcCCCCCCCcccCCchHHHHHHHHHhCChHHHHHHHHHhcCHHHH
Q 012783 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEA 246 (456)
Q Consensus 167 p~~a~inE~V~lak~~~~~~~~~fVNaVLr~i~r~~~~~~~~~~~~~~~~~~~~~~la~~~s~P~wlv~~~~~~~g~~~~ 246 (456)
+| +-+.|.+...-..+..+.|.|.....-.+... . ......++..|++-.++...+.+.+...++
T Consensus 90 ~P---~L~~v~~~~~~~~~~l~dfk~l~~~~~~~~~~--~----------~~l~~~~~~~y~y~~~l~~~~~e~~~~~ev 154 (460)
T KOG1122|consen 90 VP---DLQNVDLRIVELVPVLGDFKNLKEPGRLRSEY--C----------GQLKKDGAHYYAYGVFLAEKLMELFPLVEV 154 (460)
T ss_pred CC---ccchhhHHhhhhhhhhcchhcccccccchhhH--H----------HHHHhcccceechHHHHHHHhcccccHHHH
Confidence 33 45666665554444445555543322211110 0 012346788999999999999999999999
Q ss_pred HHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhcCCCCce-eccCCCceEEEeCCCcchhcccccccccccccchHHHHH
Q 012783 247 IKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHE-LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLV 325 (456)
Q Consensus 247 ~~~l~~~~~~~p~~lRvN~~k~~s~~~~~~~L~~~gi~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~G~~~vQd~ss~lv 325 (456)
.+++++++.++|+++|.||+| .-+.++...|...|+-.. ...|..-++++..+..++..++.|..|++.+|+.+|.++
T Consensus 155 ~~~~e~~~~~rp~tir~ntlk-~~rrd~~~~L~nrgv~~~pl~~ws~vgl~v~~s~vpigat~e~lag~~~LQ~~sS~Lp 233 (460)
T KOG1122|consen 155 YEFLEANEKPRPVTIRTNTLK-TRRRDLAVELSNRGVNLDPLGKWSKVGLVVFDSVVPIGATPEYLAGHYMLQNASSFLP 233 (460)
T ss_pred HHHHHhhcCCCCeeEEecccc-hhhhhHHHHHHhcccCcccccccccceEEEecCccccCCchhhcccceeeccCcccce
Confidence 999999999999999999999 456677777777787664 355888888888776678888999999999999999999
Q ss_pred HHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc-cCCCC
Q 012783 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVK 404 (456)
Q Consensus 326 ~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~-~~~~~ 404 (456)
+.+|+|+||++||||||||||||+|||.+|+++|.|+|+|.+..|++.++.|+.++|+.| ..+++.|..+++. ...++
T Consensus 234 v~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~~~~ 312 (460)
T KOG1122|consen 234 VMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEFPGS 312 (460)
T ss_pred eeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccccccCcc
Confidence 999999999999999999999999999999999999999999999999999999999998 5678899988763 33448
Q ss_pred ccEEEEcCCCCCCcccccCCCccccccccchhhhhhchHhHHHHHHHhhhcC
Q 012783 405 CDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456 (456)
Q Consensus 405 fD~VllDaPCSg~G~irr~p~~~~~wr~~~~~~~~~~~~~~~~l~~~~~~ll 456 (456)
||+||+||||||+|++.|.+.. ..|+....+. ....+|+.|..+|+-|+
T Consensus 313 fDRVLLDAPCSGtgvi~K~~~v-kt~k~~~di~--~~~~LQr~LllsAi~lv 361 (460)
T KOG1122|consen 313 FDRVLLDAPCSGTGVISKDQSV-KTNKTVKDIL--RYAHLQRELLLSAIDLV 361 (460)
T ss_pred cceeeecCCCCCCccccccccc-ccchhHHHHH--HhHHHHHHHHHHHHhhc
Confidence 9999999999999999998875 3444344433 34568888988887664
No 10
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=100.00 E-value=2.5e-38 Score=313.19 Aligned_cols=203 Identities=34% Similarity=0.498 Sum_probs=172.7
Q ss_pred HHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEE-eCCCcchhcccccccccccccchHHHHHHH
Q 012783 249 LMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRV-KTGLQNVIQAGLLKEGLCAVQDESAGLVVA 327 (456)
Q Consensus 249 ~l~~~~~~~p~~lRvN~~k~~s~~~~~~~L~~~gi~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~G~~~vQd~ss~lv~~ 327 (456)
||+++|.++|+++|||+++ ++++++.+.|++.|+.++..++.+..+++ ......+..++.|++|+|++||.+|++++.
T Consensus 1 il~~~n~~~~~~iRvN~~k-~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~G~~~vQd~sS~l~~~ 79 (283)
T PF01189_consen 1 ILEANNCPPPVTIRVNTLK-ISREELLEELEEEGIQLEPIPRSPDALRVIGKSPYSICSLPEFKNGLFYVQDESSQLVAL 79 (283)
T ss_dssp HHHHCTS--GEEEEE-TTT-SSHHHHHHHHHHTTHEEEEETSTTCEEEEEEECSSCGGGSHHHHTTSEEEHHHHHHHHHH
T ss_pred CccccCCCCCeEEEECcCc-CCHHHHHHHHhhcccceEEcccccchhccccccccchhhchhhhCCcEEecccccccccc
Confidence 6889999999999999999 79999999999999999998888877332 223335778899999999999999999999
Q ss_pred hcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc-CCCCcc
Q 012783 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCD 406 (456)
Q Consensus 328 ~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~-~~~~fD 406 (456)
+|++++|+.|||+||||||||+++++.|++.|.|+|+|++.+|+..+++|++++|+.+ +.++..|++.+... ....||
T Consensus 80 ~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~~~~fd 158 (283)
T PF01189_consen 80 ALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADARKLDPKKPESKFD 158 (283)
T ss_dssp HHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHHHHHHHHHTTTEE
T ss_pred cccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeeccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999998 67777998876332 234699
Q ss_pred EEEEcCCCCCCcccccCCCccccccccchhhhhhchHhHHHHHHHhhhcC
Q 012783 407 KVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456 (456)
Q Consensus 407 ~VllDaPCSg~G~irr~p~~~~~wr~~~~~~~~~~~~~~~~l~~~~~~ll 456 (456)
+||+||||||+|+++|+||+ +|+ ++.....+....|..|.+.+..++
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~--~~~-~~~~~~~~l~~~Q~~iL~~a~~~~ 205 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDI--KWR-RSPEDIEKLAELQREILDNAAKLL 205 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTH--HHH-E-TTHHHHHHHHHHHHHHHHHHCE
T ss_pred hhhcCCCccchhhhhhccch--hhc-ccccccchHHHHHHHHHHHHHHhh
Confidence 99999999999999999998 664 345556666677888888887653
No 11
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=100.00 E-value=2.2e-33 Score=275.71 Aligned_cols=189 Identities=27% Similarity=0.384 Sum_probs=160.2
Q ss_pred EEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEEeCCCcchhcccccccccccccchHHHHHHHhcCCCCCCeEEEE
Q 012783 261 LRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340 (456)
Q Consensus 261 lRvN~~k~~s~~~~~~~L~~~gi~~~~~~~~~~~~~i~~~~~~~~~~~~~~~G~~~vQd~ss~lv~~~l~~~~g~~VLDl 340 (456)
+|||++| ++++++++.|++.|+.+++.+ .++++.+..+...+..++.|.+|++++||.+|++++..+++++|++|||+
T Consensus 1 ~RvN~lk-~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDl 78 (264)
T TIGR00446 1 IRVNTLK-ISVADLLQRLENRGVTLIPWC-EEGFFEVNESPLPIGSTPEYLSGLYYIQEASSMIPPLALEPDPPERVLDM 78 (264)
T ss_pred CeecCCC-CCHHHHHHHHHhCCCceeecC-CCceEEEeCCCCCcccChhHhCCeEEEECHHHHHHHHHhCCCCcCEEEEE
Confidence 6999999 799999999999999876644 45566665432236678899999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEcCCCCCCccc
Q 012783 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVL 420 (456)
Q Consensus 341 cAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllDaPCSg~G~i 420 (456)
|||||+||+++++++++.|.|+|+|+++.+++.+++|++++|+.+ |.++++|+..+... .+.||+||+||||||+|++
T Consensus 79 ~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~-~~~fD~Vl~D~Pcsg~G~~ 156 (264)
T TIGR00446 79 AAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNFDGRVFGAA-VPKFDAILLDAPCSGEGVI 156 (264)
T ss_pred CCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecCCHHHhhhh-ccCCCEEEEcCCCCCCccc
Confidence 999999999999999888999999999999999999999999986 89999999876543 3569999999999999999
Q ss_pred ccCCCccccccccchhhhhhchHhHHHHHHHhhhcC
Q 012783 421 SKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456 (456)
Q Consensus 421 rr~p~~~~~wr~~~~~~~~~~~~~~~~l~~~~~~ll 456 (456)
+++|+. +|+ +...........|..|.+.+.++|
T Consensus 157 ~~~p~~--~~~-~~~~~~~~l~~~q~~iL~~a~~~l 189 (264)
T TIGR00446 157 RKDPSR--KKN-WSEEDIQEISALQKELIDSAFDAL 189 (264)
T ss_pred ccChhh--hhc-CCHHHHHHHHHHHHHHHHHHHHhc
Confidence 999998 444 233445555667777877777664
No 12
>PRK00202 nusB transcription antitermination protein NusB; Reviewed
Probab=99.94 E-value=5.6e-27 Score=208.14 Aligned_cols=128 Identities=24% Similarity=0.343 Sum_probs=115.4
Q ss_pred cHHHHHHHHHHHHHHcCCCchHHHhhcCCCCCCCcchhhhhhhccCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 012783 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLC 137 (456)
Q Consensus 58 ~~aR~~A~~~L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~~~ 137 (456)
+++|+.|+++||+++.++.+.+.++... +....+++.|++|++.||+|+++|+..||++|++++
T Consensus 4 ~~~R~~a~~~L~~~~~~~~~~~~~l~~~----------------~~~~~~~~~d~~~~~~lv~gvlr~~~~lD~ii~~~l 67 (137)
T PRK00202 4 RKAREAAVQALYQWELSGNDIAEIIEAQ----------------LLEEQYDKADPAYFRSLVRGVVENQAELDELISPYL 67 (137)
T ss_pred HHHHHHHHHHHHHHHccCCCHHHHHHHH----------------HHhcccchhhHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4799999999999999888887765432 112347889999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHhhh
Q 012783 138 HDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLK 202 (456)
Q Consensus 138 ~~~~~~~~l~~~~~~iLrlg~yell~~-~~p~~a~inE~V~lak~~~~~~~~~fVNaVLr~i~r~~ 202 (456)
++ |+++++++++++|||+|+|||+|+ ++|++++|||+|++||.+++++.++|||||||++.+.-
T Consensus 68 ~~-~~~~~l~~~~~~iLr~a~~Ell~~~~~p~~~vinEaV~lak~~~~~~~~~fVNaVLr~i~r~~ 132 (137)
T PRK00202 68 KD-WTLERLDPVERAILRLALYELLFRDDVPYKVVINEAIELAKKFGDEDSHKFVNGVLDKIAKEL 132 (137)
T ss_pred cC-CCHHHhhHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCCcchhHHHHHHHHHHHh
Confidence 76 999999999999999999999999 69999999999999999999999999999999999864
No 13
>PF01029 NusB: NusB family; InterPro: IPR006027 This domain is found in a number of functionally different proteins: NusB a prokaryotic transcription factor involved in antitermination TIM44, the mitochondrial inner membrane translocase subunit RsmB, the 16S rRNA m5C967 methyltransferase NusB is a prokaryotic transcription factor involved in antitermination processes, during which it interacts with the boxA portion of the mRNA nut site. Previous studies have shown that NusB exhibits an all-helical fold, and that the protein from Escherichia coli forms monomers, while Mycobacterium tuberculosis NusB is a dimer. The functional significance of NusB dimerization is unknown. An N-terminal arginine-rich sequence is the probable RNA binding site, exhibiting aromatic residues as potential stacking partners for the RNA bases. The RNA binding region is hidden in the subunit interface of dimeric NusB proteins, such as NusB from M. tuberculosis, suggesting that such dimers have to undergo a considerable conformational change or dissociate for engagement with RNA. In certain organisms, dimerization may be employed to package NusB in an inactive form until recruitment into antitermination complexes [, ]. The antitermination proteins of E. coli are recruited in the replication cycle of Bacteriophage lambda, where they play an important role in switching from the lysogenic to the lytic cycle.; GO: 0003723 RNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1SQG_A 1SQF_A 3IMQ_A 3D3C_C 3D3B_A 1EY1_A 1EYV_A 1TZV_A 1TZT_B 1TZX_B ....
Probab=99.94 E-value=2.2e-27 Score=209.80 Aligned_cols=125 Identities=26% Similarity=0.437 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHcCCCc-------hHHHhhcCCCCCCCcchhhhhhhccCCCCCCHHHHHHHHHHHHHHHHhHHHHHH
Q 012783 59 PHRAVSAVRLMRIQFGGAF-------ADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDH 131 (456)
Q Consensus 59 ~aR~~A~~~L~~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~lv~gv~r~~~~lD~ 131 (456)
++|+.|+|+||+++.++.. .+..++. . .....++++|++|+++|++|+++|+..||+
T Consensus 2 ~aR~~A~q~L~~~~~~~~~~~~~~~~~~~~l~~--------------~--~~~~~~~~~d~~~~~~lv~gv~~~~~~ld~ 65 (134)
T PF01029_consen 2 KARELALQALYQVEFNDEEDEEEGQFLDEALEE--------------E--LEESELSEEDRAFARELVYGVLRNKEELDA 65 (134)
T ss_dssp HHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHH--------------H--HHHTTSTHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hHHHHHHHHHHHHHccCCchhhhhhhHHHHHhh--------------c--ccccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999555443 3222210 0 123468999999999999999999999999
Q ss_pred HHHHhccCCCCCCcccHHHHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHh
Q 012783 132 LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL 200 (456)
Q Consensus 132 ~i~~~~~~~~~~~~l~~~~~~iLrlg~yell~~-~~p~~a~inE~V~lak~~~~~~~~~fVNaVLr~i~r 200 (456)
+|++++++ |+++++++++++|||+|+|||+|+ ++|++++|||||++||.|+++++++|||||||+++|
T Consensus 66 ~i~~~~~~-~~~~rl~~~~~~iLrla~~El~~~~~~p~~v~InEaVelak~~~~~~~~~fVNaVL~~~~R 134 (134)
T PF01029_consen 66 LISKLLKN-WPLERLPPVDRAILRLAIYELLFLDDIPPHVAINEAVELAKKYGDEKSAGFVNAVLRRIAR 134 (134)
T ss_dssp HHHHTSTS-STGGGSGHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHH
T ss_pred HHHHHhcc-CCccccCHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhCCCCcchhHHHHHHHhhC
Confidence 99998866 999999999999999999999999 699999999999999999999999999999999986
No 14
>cd00619 Terminator_NusB Transcription termination factor NusB (N protein-Utilization Substance B). NusB plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation.
Probab=99.94 E-value=6e-27 Score=206.03 Aligned_cols=127 Identities=20% Similarity=0.215 Sum_probs=114.2
Q ss_pred cHHHHHHHHHHHHHHcCCCchHHHhhcCCCCCCCcchhhhhhhccCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 012783 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLC 137 (456)
Q Consensus 58 ~~aR~~A~~~L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~~~ 137 (456)
+.+|+.|+++||+++.++.+.+.+.+.. +....+++.|++|+++||+|+++|+..||++|++++
T Consensus 2 ~~~R~~a~~~L~~~~~~~~~~~~~l~~~----------------~~~~~~~~~d~~~~~~lv~gvlr~~~~ld~ii~~~l 65 (130)
T cd00619 2 RRARELAVQALYAWELAPEILAEVVSLL----------------ELLQYKSKKVLPFALKLVRGVLENIEEIDELIEKHL 65 (130)
T ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHH----------------HHhcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 4689999999999999888877766542 012246789999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHhh
Q 012783 138 HDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL 201 (456)
Q Consensus 138 ~~~~~~~~l~~~~~~iLrlg~yell~~~-~p~~a~inE~V~lak~~~~~~~~~fVNaVLr~i~r~ 201 (456)
++ |.++++++++++|||+|+|||+|++ +|++++|||+|++||+++++++++|||||||++.++
T Consensus 66 ~~-~~~~~l~~~~~~iLria~~el~~~~~~p~~~vinEaV~lak~~~~~~~~~fVNaVLr~i~r~ 129 (130)
T cd00619 66 RN-WSLDRLAIVERAILRLAVYELLFLPDVPHPVVINEAIELAKRFGGDDSHKFVNGVLDKIAKD 129 (130)
T ss_pred cC-CCHHHhhHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCcchhHHHHHHHHHhhc
Confidence 86 8889999999999999999999998 999999999999999999999999999999999874
No 15
>TIGR01951 nusB transcription antitermination factor NusB. A transcription antitermination complex active in many bacteria was designated N-utilization substance (Nus) in E. coli because of its interaction with phage lambda protein N. This model represents NusB. Other components are NusA and NusG. NusE is, in fact, ribosomal protein S10.
Probab=99.94 E-value=8.2e-27 Score=204.82 Aligned_cols=126 Identities=25% Similarity=0.386 Sum_probs=113.7
Q ss_pred cHHHHHHHHHHHHHHcCCCchHHHhhcCCCCCCCcchhhhhhhccCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 012783 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLC 137 (456)
Q Consensus 58 ~~aR~~A~~~L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~~~ 137 (456)
+.+|+.|+++||+++.++.+.+.+++.. . ....++++|++|+++++||+++|+..||++|++++
T Consensus 2 ~~~R~~a~~~l~~~~~~~~~~~~~l~~~----------~------~~~~l~~~d~~~~~~lv~~~lr~~~~ld~~i~~~~ 65 (129)
T TIGR01951 2 RKARELALQALYQWELSGNDVEEIIEEF----------L------EERELDEEDREYFLELVRGVLENQEEIDELISPHL 65 (129)
T ss_pred hHHHHHHHHHHHHHHcCCCCHHHHHHHH----------H------HhcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4689999999999998888888766542 1 12358889999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHh
Q 012783 138 HDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL 200 (456)
Q Consensus 138 ~~~~~~~~l~~~~~~iLrlg~yell~~-~~p~~a~inE~V~lak~~~~~~~~~fVNaVLr~i~r 200 (456)
++ |+++++++++++|||+|+|||+|+ ++|++++|||+|++||.++++++++|||||||++++
T Consensus 66 ~~-~~~~~l~~~~~~iLr~a~~el~~~~~~p~~avineaV~lak~~~~~~~~~fVNaVLr~i~r 128 (129)
T TIGR01951 66 KD-WSLERLDPVDRAILRLAAYELLYRPDVPYKVVINEAVELAKKFGDEDSHKFVNGVLDKIAK 128 (129)
T ss_pred cC-CCHHHhhHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCCchhhHHHHHHHHhh
Confidence 64 999999999999999999999999 699999999999999999999999999999999986
No 16
>cd00620 Methyltransferase_Sun N-terminal RNA binding domain of the methyltransferase Sun. The rRNA-specific 5-methylcytidine transferase Sun, also known as RrmB or Fmu shares the RNA-binding non-catalytic domain with the transcription termination factor NusB. The precise biological role of this domain in Sun is unknown, although it is likely to be involved in sequence-specific RNA binding. The C-terminal methyltransferase domain of Sun has been shown to catalyze formation of m5C at position 967 of 16S rRNA in Escherichia coli.
Probab=99.94 E-value=3.1e-26 Score=200.52 Aligned_cols=123 Identities=33% Similarity=0.506 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHcCCCchHHHhhcCCCCCCCcchhhhhhhccCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccC
Q 012783 60 HRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHD 139 (456)
Q Consensus 60 aR~~A~~~L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~~~~~ 139 (456)
+|+.|+++||+++.++.+.+.++.... .... ++.|++|+++|+||+++|+.+||++|++++++
T Consensus 3 ~R~~A~~~L~~v~~~~~~~~~~l~~~~----------------~~~~-~~~d~~~~~~lv~g~~r~~~~ld~~i~~~l~~ 65 (126)
T cd00620 3 ARSTAAEVLRDVLQRGASLNAVLSALQ----------------KKDK-SDRDRGLATELVYGTLRWLALLDWIINPLLKK 65 (126)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHH----------------HhcC-CHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC
Confidence 699999999999888887777665420 1122 68899999999999999999999999999984
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHhh
Q 012783 140 EKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL 201 (456)
Q Consensus 140 ~~~~~~l~~~~~~iLrlg~yell~~~~p~~a~inE~V~lak~~~~~~~~~fVNaVLr~i~r~ 201 (456)
+..++++++++|||+|+|||+|+++|++++|||+|++||.++++++++|||||||++.|+
T Consensus 66 --~~~~~~~~~~~iLr~a~~el~~~~~p~~avvneaVelak~~~~~~~~~fVNaVLr~i~r~ 125 (126)
T cd00620 66 --PDVGKDPDVRNLLRLGLYQLLYLDVPPHAAVDETVEIAKIRKDLGRAGLVNAVLRRFERE 125 (126)
T ss_pred --CccccCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhCCCchhhHHHHHHHHHhcc
Confidence 456899999999999999999999999999999999999999999999999999999873
No 17
>COG0781 NusB Transcription termination factor [Transcription]
Probab=99.92 E-value=7.6e-25 Score=195.86 Aligned_cols=134 Identities=22% Similarity=0.332 Sum_probs=110.0
Q ss_pred CcHHHHHHHHHHHHHHcCCCch-HHHhhcCCCCCCCcchhhhhhhccCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 012783 57 VSPHRAVSAVRLMRIQFGGAFA-DLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICL 135 (456)
Q Consensus 57 ~~~aR~~A~~~L~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~ 135 (456)
++.+|+.|+|+||+++.++... +.+..... ..+.. ...+....+..|+..++.||.+|+..||.+|.+
T Consensus 10 R~~aR~~avq~Ly~~~~~~~~~~~~~~~~~~------~~~~~-----~d~~~~~~~~~~~~~lv~gv~~~~~~iD~~I~~ 78 (151)
T COG0781 10 RRQARELAVQALYQWELSGSVSAEDILEDIE------EEFVE-----NELDIELADSEYFRSLVKGVLENQEELDELISP 78 (151)
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHH------HHHhh-----cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999866522 22222100 00000 011122278899999999999999999999999
Q ss_pred hccCCCCCCcccHHHHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHhhh
Q 012783 136 LCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLK 202 (456)
Q Consensus 136 ~~~~~~~~~~l~~~~~~iLrlg~yell~~~-~p~~a~inE~V~lak~~~~~~~~~fVNaVLr~i~r~~ 202 (456)
++++ |++++|++++|+|||+|+|||+|.+ +|..++|||||+|||.|++..+++||||||+++++..
T Consensus 79 ~L~~-w~~~rL~~verAILRla~yEl~~~~dvP~~VvInEaielaK~f~~e~s~kFINgVLd~i~~~~ 145 (151)
T COG0781 79 HLKK-WSLERLDLVERAILRLALYELLFRDDVPYKVVINEAIELAKKFSGEDSHKFVNGVLDKIAKKL 145 (151)
T ss_pred HHcc-CCHHHhhHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 9998 9999999999999999999999987 9999999999999999999999999999999999853
No 18
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.6e-24 Score=215.11 Aligned_cols=214 Identities=21% Similarity=0.259 Sum_probs=152.4
Q ss_pred HHhcC-HHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhcC-----------C--CCc-eeccCCCceEEEeCCC-
Q 012783 238 TKYLG-QEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL-----------K--VPH-ELSLHLDEFIRVKTGL- 301 (456)
Q Consensus 238 ~~~~g-~~~~~~~l~~~~~~~p~~lRvN~~k~~s~~~~~~~L~~~-----------g--i~~-~~~~~~~~~~~i~~~~- 301 (456)
.+.|. .+++..+++++..+.|..+|+.... -..+++...+++. | ++. ...+|.++.+.+....
T Consensus 33 l~~f~~~~e~~~~~~~ir~~Lps~fr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~E~~~~e~~~~~p~~p~~~a~~~~~~ 111 (375)
T KOG2198|consen 33 LDHFDKEDEFGDFWETIRKPLPSTFRYTALV-NNADALLSIFEEYEFESLKDRVIEGLKFEAPFELPWYPDNLAFEKDVK 111 (375)
T ss_pred HhcCcchHHHHHHHHHHHhccchhhhHHHhc-cchHHHHHHHhhccchhhhhhhccccccCccccCCCCcccchhhhcCc
Confidence 34444 6788899999999999999987664 2334443333322 2 221 1234444433322110
Q ss_pred -cc------hhc-----ccccccccccccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCC---CceEEEEeC
Q 012783 302 -QN------VIQ-----AGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG---QGLVYAIDI 366 (456)
Q Consensus 302 -~~------~~~-----~~~~~~G~~~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~---~g~V~AvDi 366 (456)
.. +.. ......|.++.||.+|++++.+|+++||++|||||||||+||+++.+.+.+ .|.|+|+|.
T Consensus 112 ~~~~r~~~~l~rf~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~ 191 (375)
T KOG2198|consen 112 LDEIRKSPPLSRFHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDV 191 (375)
T ss_pred ccccccCCchhhcchHhhhhcccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEeccc
Confidence 00 111 123445999999999999999999999999999999999999999988753 369999999
Q ss_pred CHHHHHHHHHHHHHcCCCceEEEEeccccccccc--------CCCCccEEEEcCCCCCCcccccCCCcccc-ccccchhh
Q 012783 367 NKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--------STVKCDKVLLDAPCSGLGVLSKTCVGIGD-WRIWKSLR 437 (456)
Q Consensus 367 s~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~--------~~~~fD~VllDaPCSg~G~irr~p~~~~~-wr~~~~~~ 437 (456)
+..|+..+.+.++++.-.+ +.+...|+..++.. ....||+||||+||||+|+++++|++|.+ |.......
T Consensus 192 d~~R~~~L~~q~~~l~~~~-~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~ 270 (375)
T KOG2198|consen 192 DPKRLNMLVHQLKRLPSPN-LLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALG 270 (375)
T ss_pred CHHHHHHHHHHHhccCCcc-eeeecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccC
Confidence 9999999999998887776 66777887665543 23479999999999999999999998766 66665555
Q ss_pred hhhchHhHHHHHHHhhhcC
Q 012783 438 YCKTSFLMQHLCETKYLLL 456 (456)
Q Consensus 438 ~~~~~~~~~~l~~~~~~ll 456 (456)
+| .+|-.|.....+||
T Consensus 271 L~---~LQ~~iL~rgl~lL 286 (375)
T KOG2198|consen 271 LH---ALQLRILRRGLRLL 286 (375)
T ss_pred Ch---HHHHHHHHHHHHHh
Confidence 54 45555555555544
No 19
>cd00447 NusB_Sun RNA binding domain of NusB (N protein-Utilization Substance B) and Sun (also known as RrmB or Fmu) proteins. This family includes two orthologous groups exemplified by the transcription termination factor NusB and the N-terminal domain of the rRNA-specific 5-methylcytidine transferase (m5C-methyltransferase) Sun. The NusB protein plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation. The m5C-methyltransferase Sun shares the
Probab=99.90 E-value=3.3e-23 Score=181.76 Aligned_cols=124 Identities=24% Similarity=0.349 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHcC-CCchHHHhhcCCCCCCCcchhhhhhhccCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 012783 60 HRAVSAVRLMRIQFG-GAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (456)
Q Consensus 60 aR~~A~~~L~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~~~~ 138 (456)
+|+.|+++||+++.+ +.+.+.+.... ....+++.|++|+++|++||++|+..||++|+++++
T Consensus 2 ~R~~a~~~L~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~d~~~~~~lv~gv~r~~~~ld~~i~~~~~ 64 (129)
T cd00447 2 AREIAFQALYQVEIRNGISLEAVLSAL-----------------EKLQLAKKDRPFALELVYGVLRNLPELDDIISPLLK 64 (129)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHH-----------------HHcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 699999999999877 77777666542 112467799999999999999999999999999998
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHhh
Q 012783 139 DEKTFSSMEPLLLQILRIGFYEIVKLD--MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL 201 (456)
Q Consensus 139 ~~~~~~~l~~~~~~iLrlg~yell~~~--~p~~a~inE~V~lak~~~~~~~~~fVNaVLr~i~r~ 201 (456)
+ |++++++...+.+|+++.+|+.++. +|++++|||+|++||.+++++.++|||||||++.++
T Consensus 65 ~-~~~~r~~~~~~~il~l~~~el~~~~~~~p~~~vineaVelak~~~~~~~~~fVNaVLr~~~r~ 128 (129)
T cd00447 65 K-WLLDRLDKVDRAILRLLLYELYQLLYDVPPPVAINEAVELAKRFGDDDSAKFVNGVLRRIAKE 128 (129)
T ss_pred C-CChhhhhHHHHHHHHHHHHHHHhCcCCCCchhHHHHHHHHHHHHCCCCcchhHHHHHHHHhhc
Confidence 7 9999999999999999888888875 899999999999999999999999999999999874
No 20
>PRK09634 nusB transcription antitermination protein NusB; Provisional
Probab=99.87 E-value=1.5e-21 Score=182.56 Aligned_cols=93 Identities=25% Similarity=0.347 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhhcCCCch
Q 012783 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAG 188 (456)
Q Consensus 109 ~~d~~~~~~lv~gv~r~~~~lD~~i~~~~~~~~~~~~l~~~~~~iLrlg~yell~~~~p~~a~inE~V~lak~~~~~~~~ 188 (456)
+++++|++++||||++|+..||++|++++++ |++.++++++++|||+|+|||+|+++|++++|||+|++||+|++++++
T Consensus 110 ~~~r~~a~~Lv~gvlr~~~~LD~iI~~~l~~-W~l~rL~~idr~ILRlavyELl~l~~P~~vaINEAVeLAK~~~~~~~~ 188 (207)
T PRK09634 110 EEVREYALERIGAVIRNRKEIDQLLDTVMVG-WQLKRLPRIDRDILRLAVVEILFLNTPAAVAINEAVELAKRYSDEQGR 188 (207)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcc-ccccCCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhCCCccc
Confidence 8999999999999999999999999999987 999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhh
Q 012783 189 NLVNGILRKLVLLK 202 (456)
Q Consensus 189 ~fVNaVLr~i~r~~ 202 (456)
+|||||||++.+..
T Consensus 189 ~FVNaVLrri~r~~ 202 (207)
T PRK09634 189 RFINGVLRRLQDAL 202 (207)
T ss_pred chHHHHHHHHHHHh
Confidence 99999999999853
No 21
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=3.3e-21 Score=191.52 Aligned_cols=208 Identities=23% Similarity=0.317 Sum_probs=155.9
Q ss_pred cCHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhcCCCCc---------eeccCCCceEEEeCCCcchhcccccc
Q 012783 241 LGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH---------ELSLHLDEFIRVKTGLQNVIQAGLLK 311 (456)
Q Consensus 241 ~g~~~~~~~l~~~~~~~p~~lRvN~~k~~s~~~~~~~L~~~gi~~---------~~~~~~~~~~~i~~~~~~~~~~~~~~ 311 (456)
.+.+.++++....+.+.|.++|+||++ .+.+|.+..|..++... -.+++.++.+.++.. ..+...+.|+
T Consensus 114 ~~~~~~~~l~~t~~~~~pr~vRINtlk-~~~~e~~~~L~~e~~~~~~~l~p~~~~~D~~~~~ll~~~~~-n~i~~~~ly~ 191 (413)
T KOG2360|consen 114 RKVKSLRELKLTMKIPLPRYVRINTLK-GTTDEALDYLDYEKWKMITELKPDEFYVDPHVENLIIFPPS-NFIVEHELYK 191 (413)
T ss_pred hhHHHHHHhhccCCCCCceeEEeeccc-CchhhhhhhhhhhhhhhhhhcCCcceeccccchhhcccCCC-cceeeccccc
Confidence 355566666654457899999999999 58888888887776541 123333444444422 2456678999
Q ss_pred cccccccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEe
Q 012783 312 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391 (456)
Q Consensus 312 ~G~~~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~ 391 (456)
+|.+.+||.+|+++++.|++.+|..|+|+||+||.||+|+|..|.+.|+|+|+|.++.|.+.+++.+...|+.+ +....
T Consensus 192 ~g~~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~ 270 (413)
T KOG2360|consen 192 NGKFILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVE 270 (413)
T ss_pred cCceEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-ccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987 67779
Q ss_pred ccccccc-ccCCCCccEEEEcCCCCCCcccccCCCccccccccchhhhhhchHhHHHHHHHh
Q 012783 392 ADLRTFA-DNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETK 452 (456)
Q Consensus 392 ~Da~~~~-~~~~~~fD~VllDaPCSg~G~irr~p~~~~~wr~~~~~~~~~~~~~~~~l~~~~ 452 (456)
+|+...+ +..-.....||+||+|||+|+..|.-.... =-+....+++..+-.|..+.++|
T Consensus 271 ~df~~t~~~~~~~~v~~iL~DpscSgSgm~~r~~~~~~-~e~~~~~rL~~L~~fq~~~~~ha 331 (413)
T KOG2360|consen 271 GDFLNTATPEKFRDVTYILVDPSCSGSGMVSRQDEDPG-AETESPERLENLQSFQIRILKHA 331 (413)
T ss_pred ccccCCCCcccccceeEEEeCCCCCCCccccceeeccC-CCcccHHHHHHHHHHHHHHHHHH
Confidence 9987632 112245678999999999999877544310 11233444554444444444443
No 22
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.45 E-value=4.6e-13 Score=128.94 Aligned_cols=129 Identities=17% Similarity=0.219 Sum_probs=112.1
Q ss_pred hHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc
Q 012783 320 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399 (456)
Q Consensus 320 ~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~ 399 (456)
..+.+++.+..+....+|||+|||.|..++.+|++..+ .+|++||+++++.+.+++|++..++..+|+++++|..++..
T Consensus 31 ~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~ 109 (248)
T COG4123 31 TDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLK 109 (248)
T ss_pred cHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhh
Confidence 36778888988888999999999999999999998654 89999999999999999999999999999999999998866
Q ss_pred cCC-CCccEEEEcCCCCCCcccccCCCccccccccchhhhhhchHhHHHHHHHhhhcC
Q 012783 400 NST-VKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456 (456)
Q Consensus 400 ~~~-~~fD~VllDaPCSg~G~irr~p~~~~~wr~~~~~~~~~~~~~~~~l~~~~~~ll 456 (456)
... .+||.|+|+||.--.|.- ++++- ...+.+|+.....+.+++.+..||
T Consensus 110 ~~~~~~fD~Ii~NPPyf~~~~~-~~~~~------~~~~Ar~e~~~~le~~i~~a~~~l 160 (248)
T COG4123 110 ALVFASFDLIICNPPYFKQGSR-LNENP------LRAIARHEITLDLEDLIRAAAKLL 160 (248)
T ss_pred cccccccCEEEeCCCCCCCccc-cCcCh------hhhhhhhhhcCCHHHHHHHHHHHc
Confidence 443 359999999999988887 55653 456788888888899999988876
No 23
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.30 E-value=2.2e-11 Score=116.04 Aligned_cols=94 Identities=13% Similarity=0.208 Sum_probs=80.9
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccC
Q 012783 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401 (456)
Q Consensus 322 s~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~ 401 (456)
...+...+++++|++|||+|||+|..|..++...+..++|+++|+++++++.+++|++++|+++ ++++++|+......
T Consensus 66 ~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~-v~~~~~d~~~~~~~- 143 (215)
T TIGR00080 66 VAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDN-VIVIVGDGTQGWEP- 143 (215)
T ss_pred HHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC-eEEEECCcccCCcc-
Confidence 3466677889999999999999999999999987667899999999999999999999999976 89999998764332
Q ss_pred CCCccEEEEcCCCCCC
Q 012783 402 TVKCDKVLLDAPCSGL 417 (456)
Q Consensus 402 ~~~fD~VllDaPCSg~ 417 (456)
..+||+|++|+++...
T Consensus 144 ~~~fD~Ii~~~~~~~~ 159 (215)
T TIGR00080 144 LAPYDRIYVTAAGPKI 159 (215)
T ss_pred cCCCCEEEEcCCcccc
Confidence 3589999999887543
No 24
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.28 E-value=2.3e-11 Score=111.83 Aligned_cols=88 Identities=22% Similarity=0.343 Sum_probs=78.9
Q ss_pred hHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc
Q 012783 320 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399 (456)
Q Consensus 320 ~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~ 399 (456)
+-..+....|.+.||++++|+|||+|+.|+.++ ++++.++|+|+|.++++++..++|++++|++| ++++.+|+.+...
T Consensus 21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n-~~vv~g~Ap~~L~ 98 (187)
T COG2242 21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDN-LEVVEGDAPEALP 98 (187)
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCc-EEEEeccchHhhc
Confidence 445567778999999999999999999999999 77889999999999999999999999999987 8999999987655
Q ss_pred cCCCCccEEEE
Q 012783 400 NSTVKCDKVLL 410 (456)
Q Consensus 400 ~~~~~fD~Vll 410 (456)
..+ .||+||+
T Consensus 99 ~~~-~~daiFI 108 (187)
T COG2242 99 DLP-SPDAIFI 108 (187)
T ss_pred CCC-CCCEEEE
Confidence 443 7999999
No 25
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.28 E-value=1.9e-11 Score=112.35 Aligned_cols=93 Identities=20% Similarity=0.282 Sum_probs=78.4
Q ss_pred cchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccc
Q 012783 318 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397 (456)
Q Consensus 318 Qd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~ 397 (456)
-|.++.+++..+...++.+|||+|||+|..++.++... +..+|+++|+++..++.+++|++.+++.+ ++++..|....
T Consensus 16 ~d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~ 93 (170)
T PF05175_consen 16 LDAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEA 93 (170)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTT
T ss_pred CCHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccc
Confidence 36788888888877788999999999999999999874 45689999999999999999999999998 99999998664
Q ss_pred cccCCCCccEEEEcCCC
Q 012783 398 ADNSTVKCDKVLLDAPC 414 (456)
Q Consensus 398 ~~~~~~~fD~VllDaPC 414 (456)
.. ..+||.|+++||.
T Consensus 94 ~~--~~~fD~Iv~NPP~ 108 (170)
T PF05175_consen 94 LP--DGKFDLIVSNPPF 108 (170)
T ss_dssp CC--TTCEEEEEE---S
T ss_pred cc--ccceeEEEEccch
Confidence 33 4799999999993
No 26
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.27 E-value=6.5e-11 Score=116.51 Aligned_cols=172 Identities=16% Similarity=0.125 Sum_probs=110.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHH---HHHHh--cCCCCcee----ccCCCceEEEeCCC
Q 012783 231 VWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL---VMQLN--LLKVPHEL----SLHLDEFIRVKTGL 301 (456)
Q Consensus 231 ~wlv~~~~~~~g~~~~~~~l~~~~~~~p~~lRvN~~k~~s~~~~---~~~L~--~~gi~~~~----~~~~~~~~~i~~~~ 301 (456)
.|..++|.+ +..+++-++......++..++.|..+..+.+++ .+.++ ..|.+... .++....+.+..
T Consensus 9 ~~~~~~l~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~g~~~f~~~~~~~~~-- 84 (275)
T PRK09328 9 REATARLAS--PRLDAELLLAHVLGLSRTDLLLNPEEELTPEELERFRALVARRAAGEPLQYILGEAEFWGLDFKVSP-- 84 (275)
T ss_pred HHHHHHHhC--cHHHHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHcCCCHHHHceeceEcCcEEEECC--
Confidence 466666665 667788888777666777788887664455433 22222 22333321 111111111111
Q ss_pred cchhcccccccccccccchHHHHHH---HhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHH
Q 012783 302 QNVIQAGLLKEGLCAVQDESAGLVV---AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA 378 (456)
Q Consensus 302 ~~~~~~~~~~~G~~~vQd~ss~lv~---~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~ 378 (456)
+.+....+.-.++- ..+...++.+|||+|||+|..+..++... +...|+++|+++.+++.+++|+
T Consensus 85 -----------~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~ 152 (275)
T PRK09328 85 -----------GVLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNA 152 (275)
T ss_pred -----------CceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHH
Confidence 11222111112222 22345678899999999999999999986 4689999999999999999999
Q ss_pred HHcCCCceEEEEecccccccccCCCCccEEEEcCCCCCCcccc
Q 012783 379 KLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLS 421 (456)
Q Consensus 379 ~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllDaPCSg~G~ir 421 (456)
+ .+....+.++++|+..... .++||.|++||||...+.+.
T Consensus 153 ~-~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy~~~~~~~ 192 (275)
T PRK09328 153 K-HGLGARVEFLQGDWFEPLP--GGRFDLIVSNPPYIPEADIH 192 (275)
T ss_pred H-hCCCCcEEEEEccccCcCC--CCceeEEEECCCcCCcchhh
Confidence 8 3333458999999854322 36899999999999887755
No 27
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.26 E-value=2e-11 Score=123.13 Aligned_cols=88 Identities=23% Similarity=0.249 Sum_probs=74.7
Q ss_pred HhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCcc
Q 012783 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406 (456)
Q Consensus 327 ~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD 406 (456)
.++...++.+|||+|||+|..++.+|.. ..+|+|+|+++.+++.+++|++.+|+++ ++++++|+..+.....+.||
T Consensus 167 ~~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~-v~~~~~D~~~~~~~~~~~~D 242 (315)
T PRK03522 167 DWVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTN-VQFQALDSTQFATAQGEVPD 242 (315)
T ss_pred HHHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEcCHHHHHHhcCCCCe
Confidence 3444446789999999999999999984 4689999999999999999999999965 89999999876533335799
Q ss_pred EEEEcCCCCCCc
Q 012783 407 KVLLDAPCSGLG 418 (456)
Q Consensus 407 ~VllDaPCSg~G 418 (456)
.|++|||++|.+
T Consensus 243 ~Vv~dPPr~G~~ 254 (315)
T PRK03522 243 LVLVNPPRRGIG 254 (315)
T ss_pred EEEECCCCCCcc
Confidence 999999999864
No 28
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.24 E-value=3e-11 Score=125.20 Aligned_cols=114 Identities=19% Similarity=0.297 Sum_probs=89.7
Q ss_pred eCCCcchhc-ccccccccccccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q 012783 298 KTGLQNVIQ-AGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 376 (456)
Q Consensus 298 ~~~~~~~~~-~~~~~~G~~~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~ 376 (456)
++|.....+ ..++++|+|.-|......+.... +|.+|||+|||+|+.+++++. .+..+|+++|+|+.+++.+++
T Consensus 187 E~g~~f~vdl~~g~ktG~flDqr~~R~~~~~~~---~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~ 261 (396)
T PRK15128 187 EHGMKLLVDIQGGHKTGYYLDQRDSRLATRRYV---ENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQ 261 (396)
T ss_pred ECCEEEEEecccccccCcChhhHHHHHHHHHhc---CCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHH
Confidence 445432222 36788999999987776666543 588999999999999887664 355699999999999999999
Q ss_pred HHHHcCCC-ceEEEEeccccccccc---CCCCccEEEEcCCCCC
Q 012783 377 TAKLHQVN-SVIRTIHADLRTFADN---STVKCDKVLLDAPCSG 416 (456)
Q Consensus 377 n~~r~g~~-~~V~~~~~Da~~~~~~---~~~~fD~VllDaPCSg 416 (456)
|++.+|+. .+++++++|+..+... ..++||.|++|||+..
T Consensus 262 N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~ 305 (396)
T PRK15128 262 NVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFV 305 (396)
T ss_pred HHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCC
Confidence 99999986 3589999999876432 1358999999999854
No 29
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.23 E-value=8.5e-11 Score=111.33 Aligned_cols=91 Identities=18% Similarity=0.326 Sum_probs=79.0
Q ss_pred HHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCC
Q 012783 323 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402 (456)
Q Consensus 323 ~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~ 402 (456)
..+...+++.++++|||+|||+|..+..+++.+++.++|+++|+++++++.+++|+++.|+.++++++++|+...... .
T Consensus 62 ~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~ 140 (205)
T PRK13944 62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-H 140 (205)
T ss_pred HHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-C
Confidence 455677888899999999999999999999988767899999999999999999999999877789999999764432 3
Q ss_pred CCccEEEEcCCC
Q 012783 403 VKCDKVLLDAPC 414 (456)
Q Consensus 403 ~~fD~VllDaPC 414 (456)
.+||.|+++..+
T Consensus 141 ~~fD~Ii~~~~~ 152 (205)
T PRK13944 141 APFDAIIVTAAA 152 (205)
T ss_pred CCccEEEEccCc
Confidence 689999998764
No 30
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.22 E-value=6e-11 Score=107.77 Aligned_cols=85 Identities=27% Similarity=0.333 Sum_probs=64.5
Q ss_pred CeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCC-C-CccEEEEcC
Q 012783 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST-V-KCDKVLLDA 412 (456)
Q Consensus 335 ~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~-~-~fD~VllDa 412 (456)
..|+|+|||.||-|+++|.. ..+|+|+|+++.+++.+++|++.+|+.++|.++++|+.++..... . .||.|++||
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~---~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART---FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT---T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHh---CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 37999999999999999986 458999999999999999999999998889999999988754321 1 289999999
Q ss_pred CCCCCccccc
Q 012783 413 PCSGLGVLSK 422 (456)
Q Consensus 413 PCSg~G~irr 422 (456)
|-.|-.-.+.
T Consensus 78 PWGGp~Y~~~ 87 (163)
T PF09445_consen 78 PWGGPSYSKK 87 (163)
T ss_dssp -BSSGGGGGS
T ss_pred CCCCcccccc
Confidence 9998766543
No 31
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.22 E-value=1.2e-10 Score=115.71 Aligned_cols=91 Identities=21% Similarity=0.306 Sum_probs=76.5
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 331 ~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
..++.+|||+|||+|..++.++... +..+|+|+|+|+.+++.+++|++++|+.++|.++++|+.... ...+||.|++
T Consensus 119 ~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~--~~~~fD~Iv~ 195 (284)
T TIGR03533 119 PEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL--PGRKYDLIVS 195 (284)
T ss_pred cCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc--CCCCccEEEE
Confidence 3456799999999999999999875 357999999999999999999999999777999999986432 1247999999
Q ss_pred cCCCCCCcccccCC
Q 012783 411 DAPCSGLGVLSKTC 424 (456)
Q Consensus 411 DaPCSg~G~irr~p 424 (456)
|||+...+.+..-+
T Consensus 196 NPPy~~~~~~~~l~ 209 (284)
T TIGR03533 196 NPPYVDAEDMADLP 209 (284)
T ss_pred CCCCCCccchhhCC
Confidence 99998877665433
No 32
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.21 E-value=8.5e-11 Score=114.02 Aligned_cols=96 Identities=20% Similarity=0.372 Sum_probs=77.6
Q ss_pred hHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccc--c
Q 012783 320 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT--F 397 (456)
Q Consensus 320 ~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~--~ 397 (456)
..+.+++..+++.||++||+.|+|+|..|..++..+++.|+|+.+|+++++++.+++|++.+|+.+.|++.+.|... +
T Consensus 27 kD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 27 KDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred chHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence 34447788999999999999999999999999999999999999999999999999999999998779999999864 2
Q ss_pred cccCCCCccEEEEcCCCC
Q 012783 398 ADNSTVKCDKVLLDAPCS 415 (456)
Q Consensus 398 ~~~~~~~fD~VllDaPCS 415 (456)
....+..||.|++|.|.-
T Consensus 107 ~~~~~~~~DavfLDlp~P 124 (247)
T PF08704_consen 107 DEELESDFDAVFLDLPDP 124 (247)
T ss_dssp STT-TTSEEEEEEESSSG
T ss_pred cccccCcccEEEEeCCCH
Confidence 222236799999999863
No 33
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.21 E-value=6.6e-11 Score=113.95 Aligned_cols=84 Identities=20% Similarity=0.385 Sum_probs=76.2
Q ss_pred HHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCC
Q 012783 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403 (456)
Q Consensus 324 lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~ 403 (456)
..+..+.+.+|++|||+|||||..+..+++..+ .|+|+++|+|+.||+.+++.+...|..+ |+++++||.++|. .+.
T Consensus 42 ~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf-~D~ 118 (238)
T COG2226 42 ALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPF-PDN 118 (238)
T ss_pred HHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCC-CCC
Confidence 455566666999999999999999999999987 8999999999999999999999999988 9999999999984 458
Q ss_pred CccEEEE
Q 012783 404 KCDKVLL 410 (456)
Q Consensus 404 ~fD~Vll 410 (456)
+||.|.+
T Consensus 119 sFD~vt~ 125 (238)
T COG2226 119 SFDAVTI 125 (238)
T ss_pred ccCEEEe
Confidence 9999998
No 34
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.21 E-value=1.3e-10 Score=110.68 Aligned_cols=96 Identities=14% Similarity=0.149 Sum_probs=81.3
Q ss_pred ccccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccc
Q 012783 315 CAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394 (456)
Q Consensus 315 ~~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da 394 (456)
...+..-...+...+++++|++|||+|||+|+.|..+++.++..++|+++|+++++++.++++++..|+.+ |+++++|+
T Consensus 58 ~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~-v~~~~gd~ 136 (212)
T PRK13942 58 TISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDN-VEVIVGDG 136 (212)
T ss_pred EeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEECCc
Confidence 33455555567778889999999999999999999999988777899999999999999999999999876 89999998
Q ss_pred ccccccCCCCccEEEEcC
Q 012783 395 RTFADNSTVKCDKVLLDA 412 (456)
Q Consensus 395 ~~~~~~~~~~fD~VllDa 412 (456)
...... ..+||+|+++.
T Consensus 137 ~~~~~~-~~~fD~I~~~~ 153 (212)
T PRK13942 137 TLGYEE-NAPYDRIYVTA 153 (212)
T ss_pred ccCCCc-CCCcCEEEECC
Confidence 764332 36899999874
No 35
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=1.3e-10 Score=111.38 Aligned_cols=102 Identities=23% Similarity=0.346 Sum_probs=91.6
Q ss_pred cccccccccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEE
Q 012783 310 LKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 389 (456)
Q Consensus 310 ~~~G~~~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~ 389 (456)
++.+.=.+-.+.+.+++..+++.||++|||.|+|+|..|+.+|..+++.|+|+.+|+.+++++.+++|++.+|+.++|++
T Consensus 71 ~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~ 150 (256)
T COG2519 71 MKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTL 150 (256)
T ss_pred CcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEE
Confidence 56665556666777889999999999999999999999999999999999999999999999999999999999998999
Q ss_pred EecccccccccCCCCccEEEEcCC
Q 012783 390 IHADLRTFADNSTVKCDKVLLDAP 413 (456)
Q Consensus 390 ~~~Da~~~~~~~~~~fD~VllDaP 413 (456)
..+|..+.... ..||.|++|-|
T Consensus 151 ~~~Dv~~~~~~--~~vDav~LDmp 172 (256)
T COG2519 151 KLGDVREGIDE--EDVDAVFLDLP 172 (256)
T ss_pred Eeccccccccc--cccCEEEEcCC
Confidence 99999876543 48999999987
No 36
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.20 E-value=9.7e-11 Score=99.98 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=70.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc-cCCCCccEEEEcC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVLLDA 412 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~-~~~~~fD~VllDa 412 (456)
|.+|||+|||+|..++.+++.. ..+++++|+++..++.++.++...++..+++++++|+..+.. ...++||.|++||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence 6799999999999999999874 689999999999999999999999997779999999988762 2357899999999
Q ss_pred CCCCC
Q 012783 413 PCSGL 417 (456)
Q Consensus 413 PCSg~ 417 (456)
|+...
T Consensus 79 P~~~~ 83 (117)
T PF13659_consen 79 PYGPR 83 (117)
T ss_dssp STTSB
T ss_pred CCccc
Confidence 99754
No 37
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.20 E-value=1.7e-10 Score=112.69 Aligned_cols=87 Identities=17% Similarity=0.129 Sum_probs=71.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc-cCCCCccEEEEcC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVLLDA 412 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~-~~~~~fD~VllDa 412 (456)
+.+|||+|||+|.+++.++...+ ..+|+++|+|+.+++.+++|++.+|. +++++|+..... ...++||.|++||
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~----~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGG----TVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC----EEEEeechhhcchhcCCCEeEEEECC
Confidence 46899999999999999998754 46899999999999999999998763 578889865322 1235799999999
Q ss_pred CCCCCcccccC-CC
Q 012783 413 PCSGLGVLSKT-CV 425 (456)
Q Consensus 413 PCSg~G~irr~-p~ 425 (456)
||...+.+.+. |+
T Consensus 162 Py~~~~~~~~~~~e 175 (251)
T TIGR03704 162 PYVPTDAIALMPPE 175 (251)
T ss_pred CCCCchhhhcCCHH
Confidence 99998887664 44
No 38
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.17 E-value=7.9e-11 Score=113.74 Aligned_cols=85 Identities=20% Similarity=0.326 Sum_probs=62.6
Q ss_pred HHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCC
Q 012783 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403 (456)
Q Consensus 324 lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~ 403 (456)
.++..+.+.+|++|||+|||+|..|..+++.+++.++|+++|+|+.|++.++++++..+..+ |+++++|+..++.. ++
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~-i~~v~~da~~lp~~-d~ 115 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQN-IEFVQGDAEDLPFP-DN 115 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--S-EEEEE-BTTB--S--TT
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCC-eeEEEcCHHHhcCC-CC
Confidence 45566788899999999999999999999988888999999999999999999999998875 99999999998754 47
Q ss_pred CccEEEE
Q 012783 404 KCDKVLL 410 (456)
Q Consensus 404 ~fD~Vll 410 (456)
+||.|++
T Consensus 116 sfD~v~~ 122 (233)
T PF01209_consen 116 SFDAVTC 122 (233)
T ss_dssp -EEEEEE
T ss_pred ceeEEEH
Confidence 9999987
No 39
>PRK14967 putative methyltransferase; Provisional
Probab=99.17 E-value=3.1e-10 Score=108.78 Aligned_cols=107 Identities=22% Similarity=0.333 Sum_probs=81.1
Q ss_pred ccccccchHHHHHHHhc---CCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEE
Q 012783 313 GLCAVQDESAGLVVAVV---DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 389 (456)
Q Consensus 313 G~~~vQd~ss~lv~~~l---~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~ 389 (456)
|.|..|..+ .+++..+ .+.++++|||+|||+|..+..++.. +.++|+++|+++.+++.+++|++..++. +.+
T Consensus 14 g~~~p~~ds-~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~~--~~~ 88 (223)
T PRK14967 14 GVYRPQEDT-QLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGVD--VDV 88 (223)
T ss_pred CCcCCCCcH-HHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCCe--eEE
Confidence 556666544 3444333 4678899999999999999998875 3469999999999999999999998873 788
Q ss_pred EecccccccccCCCCccEEEEcCC---CCCCcccccCCCc
Q 012783 390 IHADLRTFADNSTVKCDKVLLDAP---CSGLGVLSKTCVG 426 (456)
Q Consensus 390 ~~~Da~~~~~~~~~~fD~VllDaP---CSg~G~irr~p~~ 426 (456)
+++|+.... ..++||.|++|+| |+..+...+.|+.
T Consensus 89 ~~~d~~~~~--~~~~fD~Vi~npPy~~~~~~~~~~~~~~~ 126 (223)
T PRK14967 89 RRGDWARAV--EFRPFDVVVSNPPYVPAPPDAPPSRGPAR 126 (223)
T ss_pred EECchhhhc--cCCCeeEEEECCCCCCCCcccccccChhH
Confidence 899986542 2368999999987 4555555555554
No 40
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.17 E-value=1.3e-10 Score=110.30 Aligned_cols=98 Identities=10% Similarity=0.172 Sum_probs=78.3
Q ss_pred cccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccc
Q 012783 316 AVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395 (456)
Q Consensus 316 ~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~ 395 (456)
.-|-.--..+.+.|+++||++|||+|||+|+.|..++.++++.|.|+++|+++..++.+++|++.+|..| |.++++|+.
T Consensus 55 is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~n-v~~~~gdg~ 133 (209)
T PF01135_consen 55 ISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDN-VEVVVGDGS 133 (209)
T ss_dssp E--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHS-EEEEES-GG
T ss_pred chHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCc-eeEEEcchh
Confidence 3344444566778899999999999999999999999999888999999999999999999999999987 899999987
Q ss_pred cccccCCCCccEEEEcCCCC
Q 012783 396 TFADNSTVKCDKVLLDAPCS 415 (456)
Q Consensus 396 ~~~~~~~~~fD~VllDaPCS 415 (456)
..... ..+||+|++.+-|.
T Consensus 134 ~g~~~-~apfD~I~v~~a~~ 152 (209)
T PF01135_consen 134 EGWPE-EAPFDRIIVTAAVP 152 (209)
T ss_dssp GTTGG-G-SEEEEEESSBBS
T ss_pred hcccc-CCCcCEEEEeeccc
Confidence 64332 36899999987664
No 41
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.17 E-value=1.2e-10 Score=122.81 Aligned_cols=90 Identities=27% Similarity=0.367 Sum_probs=76.2
Q ss_pred HHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---C
Q 012783 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---S 401 (456)
Q Consensus 325 v~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---~ 401 (456)
+...+.+.++++|||+|||+|..++.++.. ..+|+|+|+|+.+++.+++|++.+|+.+ ++++++|+...... .
T Consensus 289 vl~~l~~~~~~~VLDlgcGtG~~sl~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~~-v~~~~~d~~~~l~~~~~~ 364 (443)
T PRK13168 289 ALEWLDPQPGDRVLDLFCGLGNFTLPLARQ---AAEVVGVEGVEAMVERARENARRNGLDN-VTFYHANLEEDFTDQPWA 364 (443)
T ss_pred HHHHhcCCCCCEEEEEeccCCHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEeChHHhhhhhhhh
Confidence 344566778999999999999999999986 3689999999999999999999999986 89999998754321 1
Q ss_pred CCCccEEEEcCCCCCCc
Q 012783 402 TVKCDKVLLDAPCSGLG 418 (456)
Q Consensus 402 ~~~fD~VllDaPCSg~G 418 (456)
...||.|++|||++|.+
T Consensus 365 ~~~fD~Vi~dPPr~g~~ 381 (443)
T PRK13168 365 LGGFDKVLLDPPRAGAA 381 (443)
T ss_pred cCCCCEEEECcCCcChH
Confidence 35799999999999865
No 42
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.16 E-value=2e-10 Score=97.12 Aligned_cols=78 Identities=22% Similarity=0.296 Sum_probs=67.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEcC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllDa 412 (456)
||.+|||+|||+|..+..+++.. +..+|+++|+++.+++.+++++...+...+|+++++|+ .......++||.|+++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC
Confidence 68999999999999999999953 46899999999999999999998788877899999999 33333346899999976
No 43
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.15 E-value=1.6e-10 Score=128.30 Aligned_cols=106 Identities=17% Similarity=0.246 Sum_probs=89.5
Q ss_pred cccccccccccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCC-ce
Q 012783 308 GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SV 386 (456)
Q Consensus 308 ~~~~~G~~~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~-~~ 386 (456)
...++|+|.-|.....++.... .|.+|||+|||+|+++++++.. +..+|+++|+|+.+++.+++|++.+|+. ++
T Consensus 516 ~~~~tG~flDqr~~R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~ 590 (702)
T PRK11783 516 DYLDTGLFLDHRPTRRMIGQMA---KGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGRQ 590 (702)
T ss_pred CCCcceECHHHHHHHHHHHHhc---CCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCccc
Confidence 5678899999988877776654 4789999999999999999974 4457999999999999999999999986 56
Q ss_pred EEEEecccccccccCCCCccEEEEcCCCCCCc
Q 012783 387 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLG 418 (456)
Q Consensus 387 V~~~~~Da~~~~~~~~~~fD~VllDaPCSg~G 418 (456)
++++++|+.++.....++||+|++|||+.+.+
T Consensus 591 v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~ 622 (702)
T PRK11783 591 HRLIQADCLAWLKEAREQFDLIFIDPPTFSNS 622 (702)
T ss_pred eEEEEccHHHHHHHcCCCcCEEEECCCCCCCC
Confidence 99999999876533346899999999998653
No 44
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.15 E-value=3.6e-10 Score=113.60 Aligned_cols=86 Identities=19% Similarity=0.257 Sum_probs=74.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEcCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllDaP 413 (456)
+.+|||+|||+|..++.++... +..+|+++|+|+.+++.+++|++++|+.++|+++++|+..... ..+||.|++|||
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPP 210 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPP 210 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCC
Confidence 3789999999999999999875 4579999999999999999999999997779999999865322 257999999999
Q ss_pred CCCCccccc
Q 012783 414 CSGLGVLSK 422 (456)
Q Consensus 414 CSg~G~irr 422 (456)
+.+.+.+..
T Consensus 211 yi~~~~~~~ 219 (307)
T PRK11805 211 YVDAEDMAD 219 (307)
T ss_pred CCCccchhh
Confidence 998876543
No 45
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.14 E-value=1.1e-10 Score=119.93 Aligned_cols=113 Identities=22% Similarity=0.336 Sum_probs=93.3
Q ss_pred eCCCcchhcc-cccccccccccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q 012783 298 KTGLQNVIQA-GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 376 (456)
Q Consensus 298 ~~~~~~~~~~-~~~~~G~~~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~ 376 (456)
+++....... ...++|+|.-|..+...+...+. |.+|||+||-||+.|+++|. ++..+|++||+|...++.+++
T Consensus 184 E~g~kf~v~~~~g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~al~~a~~ 258 (393)
T COG1092 184 ENGVKFLVDLVDGLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKRALEWARE 258 (393)
T ss_pred eCCeEEEEecCCcccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHh--cCCCceEEEeccHHHHHHHHH
Confidence 4454433332 46789999999999888887665 99999999999999999986 456699999999999999999
Q ss_pred HHHHcCCC-ceEEEEecccccccccC---CCCccEEEEcCCCC
Q 012783 377 TAKLHQVN-SVIRTIHADLRTFADNS---TVKCDKVLLDAPCS 415 (456)
Q Consensus 377 n~~r~g~~-~~V~~~~~Da~~~~~~~---~~~fD~VllDaPCS 415 (456)
|++.+|++ .++.++++|+..+.... ..+||+|++|||--
T Consensus 259 N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF 301 (393)
T COG1092 259 NAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSF 301 (393)
T ss_pred HHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEECCccc
Confidence 99999986 45789999998875533 34899999999964
No 46
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.12 E-value=4.7e-10 Score=105.54 Aligned_cols=91 Identities=19% Similarity=0.269 Sum_probs=76.5
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccC
Q 012783 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401 (456)
Q Consensus 322 s~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~ 401 (456)
..+....+++.++++|||+|||+|..++.++..+++.++|+++|+++.+++.+++|++.+|+.+.+.++++|+.++....
T Consensus 29 r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~ 108 (198)
T PRK00377 29 RALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI 108 (198)
T ss_pred HHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc
Confidence 34445567889999999999999999999998877778999999999999999999999996445889999987654333
Q ss_pred CCCccEEEEcC
Q 012783 402 TVKCDKVLLDA 412 (456)
Q Consensus 402 ~~~fD~VllDa 412 (456)
...||+|+++.
T Consensus 109 ~~~~D~V~~~~ 119 (198)
T PRK00377 109 NEKFDRIFIGG 119 (198)
T ss_pred CCCCCEEEECC
Confidence 36899999954
No 47
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=2.2e-10 Score=119.59 Aligned_cols=91 Identities=20% Similarity=0.270 Sum_probs=81.2
Q ss_pred HHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccC--
Q 012783 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-- 401 (456)
Q Consensus 324 lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~-- 401 (456)
.+..+++..++++|||+.||.|++|+.+|.. ..+|+|+|++++.++.+++|++.+|+.| +.+..+|+..+....
T Consensus 284 ~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~~~~~ 359 (432)
T COG2265 284 TALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTPAWWE 359 (432)
T ss_pred HHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhhhccc
Confidence 4556677888999999999999999999964 6799999999999999999999999999 999999998876543
Q ss_pred CCCccEEEEcCCCCCCc
Q 012783 402 TVKCDKVLLDAPCSGLG 418 (456)
Q Consensus 402 ~~~fD~VllDaPCSg~G 418 (456)
...||.|++|||.+|.+
T Consensus 360 ~~~~d~VvvDPPR~G~~ 376 (432)
T COG2265 360 GYKPDVVVVDPPRAGAD 376 (432)
T ss_pred cCCCCEEEECCCCCCCC
Confidence 25789999999999999
No 48
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.11 E-value=5.7e-10 Score=100.29 Aligned_cols=82 Identities=17% Similarity=0.264 Sum_probs=71.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEc
Q 012783 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (456)
Q Consensus 332 ~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllD 411 (456)
+.+.+|||+|||+|..+..++....+.++|+++|+++.+++.+++++++.++++ ++++++|+.+++....+.||.|+++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~n-i~~~~~d~~~l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDN-IEFIQGDIEDLPQELEEKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTT-EEEEESBTTCGCGCSSTTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccc-cceEEeehhccccccCCCeeEEEEc
Confidence 467899999999999999999766678999999999999999999999999995 9999999998653212689999999
Q ss_pred CCC
Q 012783 412 APC 414 (456)
Q Consensus 412 aPC 414 (456)
.++
T Consensus 81 ~~l 83 (152)
T PF13847_consen 81 GVL 83 (152)
T ss_dssp STG
T ss_pred Cch
Confidence 777
No 49
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.10 E-value=3.7e-10 Score=106.43 Aligned_cols=80 Identities=15% Similarity=0.213 Sum_probs=67.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEc
Q 012783 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (456)
Q Consensus 332 ~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllD 411 (456)
.++.+|||+|||+|..++.++.. ...+|+++|+++..++.+++|++.+|+.+ +.++++|+..+.......||+|++|
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr--~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~-v~~~~~D~~~~l~~~~~~fDlV~~D 128 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSR--YAAGATLLEMDRAVAQQLIKNLATLKAGN-ARVVNTNALSFLAQPGTPHNVVFVD 128 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCc-EEEEEchHHHHHhhcCCCceEEEEC
Confidence 56889999999999999876554 24799999999999999999999999875 8999999876543223479999999
Q ss_pred CCC
Q 012783 412 APC 414 (456)
Q Consensus 412 aPC 414 (456)
||.
T Consensus 129 PPy 131 (199)
T PRK10909 129 PPF 131 (199)
T ss_pred CCC
Confidence 994
No 50
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=7e-10 Score=104.13 Aligned_cols=97 Identities=12% Similarity=0.186 Sum_probs=82.1
Q ss_pred ccccccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEec
Q 012783 313 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 392 (456)
Q Consensus 313 G~~~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~ 392 (456)
|...-|----..+.++|++++|++||++|||+|+.|+.||+.. ++|+++|+.+.-.+.+++|++.+|+.| |.++++
T Consensus 52 gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~g 127 (209)
T COG2518 52 GQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYEN-VTVRHG 127 (209)
T ss_pred CceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEEC
Confidence 4444455455677889999999999999999999999999984 599999999999999999999999998 999999
Q ss_pred ccccccccCCCCccEEEEcCCC
Q 012783 393 DLRTFADNSTVKCDKVLLDAPC 414 (456)
Q Consensus 393 Da~~~~~~~~~~fD~VllDaPC 414 (456)
|+..-... ..+||+|++.+-+
T Consensus 128 DG~~G~~~-~aPyD~I~Vtaaa 148 (209)
T COG2518 128 DGSKGWPE-EAPYDRIIVTAAA 148 (209)
T ss_pred CcccCCCC-CCCcCEEEEeecc
Confidence 99764332 3689999996543
No 51
>PLN02476 O-methyltransferase
Probab=99.09 E-value=4.7e-10 Score=110.52 Aligned_cols=100 Identities=17% Similarity=0.167 Sum_probs=85.5
Q ss_pred ccccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccc
Q 012783 315 CAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394 (456)
Q Consensus 315 ~~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da 394 (456)
..+.....++...++...++.+|||+|++.|+.|+.+|..+++.|+|+++|.++++++.+++|+++.|+.++|+++.+|+
T Consensus 100 ~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA 179 (278)
T PLN02476 100 MQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLA 179 (278)
T ss_pred cccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence 34455566677777777778999999999999999999999888999999999999999999999999998899999999
Q ss_pred ccccccC-----CCCccEEEEcCCC
Q 012783 395 RTFADNS-----TVKCDKVLLDAPC 414 (456)
Q Consensus 395 ~~~~~~~-----~~~fD~VllDaPC 414 (456)
.+..... .++||.||+|++=
T Consensus 180 ~e~L~~l~~~~~~~~FD~VFIDa~K 204 (278)
T PLN02476 180 AESLKSMIQNGEGSSYDFAFVDADK 204 (278)
T ss_pred HHHHHHHHhcccCCCCCEEEECCCH
Confidence 7753321 3589999999983
No 52
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.09 E-value=5.8e-10 Score=113.20 Aligned_cols=90 Identities=14% Similarity=0.137 Sum_probs=76.7
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccC
Q 012783 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401 (456)
Q Consensus 322 s~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~ 401 (456)
+..++..+++++|+.|||.|||+|+.++.++.. ...|+++|+++.++..++.|++.+|+.+ +.++++|+..++..
T Consensus 171 a~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~- 245 (329)
T TIGR01177 171 ARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLS- 245 (329)
T ss_pred HHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcc-
Confidence 334455667889999999999999998886653 4789999999999999999999999988 88999999887543
Q ss_pred CCCccEEEEcCCCCC
Q 012783 402 TVKCDKVLLDAPCSG 416 (456)
Q Consensus 402 ~~~fD~VllDaPCSg 416 (456)
.+.||.|++||||..
T Consensus 246 ~~~~D~Iv~dPPyg~ 260 (329)
T TIGR01177 246 SESVDAIATDPPYGR 260 (329)
T ss_pred cCCCCEEEECCCCcC
Confidence 368999999999964
No 53
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.09 E-value=1.7e-10 Score=107.41 Aligned_cols=82 Identities=24% Similarity=0.338 Sum_probs=64.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---CCCCccEEE
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---STVKCDKVL 409 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---~~~~fD~Vl 409 (456)
+|.+|||+|||+|..++..+++ +...|+.||.+++.+..+++|++.+++.+.+++++.|+...... ...+||+|+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 6899999999999999999886 56799999999999999999999999998889999997654321 347899999
Q ss_pred EcCCCCC
Q 012783 410 LDAPCSG 416 (456)
Q Consensus 410 lDaPCSg 416 (456)
+|||.--
T Consensus 120 lDPPY~~ 126 (183)
T PF03602_consen 120 LDPPYAK 126 (183)
T ss_dssp E--STTS
T ss_pred ECCCccc
Confidence 9999863
No 54
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.09 E-value=2e-10 Score=117.56 Aligned_cols=90 Identities=27% Similarity=0.400 Sum_probs=64.3
Q ss_pred HHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc----
Q 012783 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---- 400 (456)
Q Consensus 325 v~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---- 400 (456)
+..++++.++ .|||++||.|.+|+.+|.. ..+|+|+|+++..++.+++|++.+|++| ++++++++.++...
T Consensus 189 ~~~~l~~~~~-~vlDlycG~G~fsl~la~~---~~~V~gvE~~~~av~~A~~Na~~N~i~n-~~f~~~~~~~~~~~~~~~ 263 (352)
T PF05958_consen 189 ALEWLDLSKG-DVLDLYCGVGTFSLPLAKK---AKKVIGVEIVEEAVEDARENAKLNGIDN-VEFIRGDAEDFAKALAKA 263 (352)
T ss_dssp HHHHCTT-TT-EEEEES-TTTCCHHHHHCC---SSEEEEEES-HHHHHHHHHHHHHTT--S-EEEEE--SHHCCCHHCCS
T ss_pred HHHHhhcCCC-cEEEEeecCCHHHHHHHhh---CCeEEEeeCCHHHHHHHHHHHHHcCCCc-ceEEEeeccchhHHHHhh
Confidence 4455676665 8999999999999999975 4689999999999999999999999998 89998877543210
Q ss_pred -----------CCCCccEEEEcCCCCCCcc
Q 012783 401 -----------STVKCDKVLLDAPCSGLGV 419 (456)
Q Consensus 401 -----------~~~~fD~VllDaPCSg~G~ 419 (456)
....+|.|++|||.+|.+-
T Consensus 264 r~~~~~~~~~~~~~~~d~vilDPPR~G~~~ 293 (352)
T PF05958_consen 264 REFNRLKGIDLKSFKFDAVILDPPRAGLDE 293 (352)
T ss_dssp -GGTTGGGS-GGCTTESEEEE---TT-SCH
T ss_pred HHHHhhhhhhhhhcCCCEEEEcCCCCCchH
Confidence 1136899999999999883
No 55
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.08 E-value=5.1e-10 Score=108.27 Aligned_cols=94 Identities=22% Similarity=0.216 Sum_probs=79.8
Q ss_pred hHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc
Q 012783 320 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399 (456)
Q Consensus 320 ~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~ 399 (456)
...+++..++...++.+|||+|||+|.-++.++..+++.|+|+++|+++++++.+++|+++.|+.++|+++.+|+.+...
T Consensus 55 ~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~ 134 (234)
T PLN02781 55 DEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALD 134 (234)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHH
Confidence 33445555666677889999999999999999998888899999999999999999999999998889999999976532
Q ss_pred c-----CCCCccEEEEcCC
Q 012783 400 N-----STVKCDKVLLDAP 413 (456)
Q Consensus 400 ~-----~~~~fD~VllDaP 413 (456)
. ..++||.|++|++
T Consensus 135 ~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 135 QLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred HHHhCCCCCCCCEEEECCC
Confidence 1 1368999999974
No 56
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=9.5e-10 Score=101.02 Aligned_cols=98 Identities=22% Similarity=0.249 Sum_probs=78.2
Q ss_pred ccchHHHHHHHh--cCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccc
Q 012783 317 VQDESAGLVVAV--VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394 (456)
Q Consensus 317 vQd~ss~lv~~~--l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da 394 (456)
.-+.++.++..+ ...-.|..|+|+|||+|..++..+-+ +..+|+|+|++++.++.+++|+++++. .|.++.+|+
T Consensus 27 p~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~l~g--~v~f~~~dv 102 (198)
T COG2263 27 PAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEELLG--DVEFVVADV 102 (198)
T ss_pred ChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHhhCC--ceEEEEcch
Confidence 334444444333 34557889999999999998877654 467999999999999999999999543 389999999
Q ss_pred ccccccCCCCccEEEEcCCCCCCcccccCCC
Q 012783 395 RTFADNSTVKCDKVLLDAPCSGLGVLSKTCV 425 (456)
Q Consensus 395 ~~~~~~~~~~fD~VllDaPCSg~G~irr~p~ 425 (456)
..+. .+||.|+.|||- |+.+||+|
T Consensus 103 ~~~~----~~~dtvimNPPF---G~~~rhaD 126 (198)
T COG2263 103 SDFR----GKFDTVIMNPPF---GSQRRHAD 126 (198)
T ss_pred hhcC----CccceEEECCCC---ccccccCC
Confidence 8753 589999999996 77899998
No 57
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.07 E-value=6e-10 Score=110.28 Aligned_cols=114 Identities=25% Similarity=0.329 Sum_probs=85.4
Q ss_pred eCCCcchhc-ccccccccccccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q 012783 298 KTGLQNVIQ-AGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 376 (456)
Q Consensus 298 ~~~~~~~~~-~~~~~~G~~~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~ 376 (456)
++|.....+ ..+.+.|+|.-|.+...++.... .|.+|||+||-+|++|++++. ++..+|++||.|...++.+++
T Consensus 90 E~gl~f~v~l~~gqktGlFlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~al~~a~~ 164 (286)
T PF10672_consen 90 ENGLKFRVDLTDGQKTGLFLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKRALEWAKE 164 (286)
T ss_dssp ETTEEEEEESSSSSSTSS-GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HHHHHHHHH
T ss_pred ECCEEEEEEcCCCCcceEcHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHH
Confidence 455443333 35688999999999999888764 488999999999999998775 455689999999999999999
Q ss_pred HHHHcCCC-ceEEEEeccccccccc--CCCCccEEEEcCCCCC
Q 012783 377 TAKLHQVN-SVIRTIHADLRTFADN--STVKCDKVLLDAPCSG 416 (456)
Q Consensus 377 n~~r~g~~-~~V~~~~~Da~~~~~~--~~~~fD~VllDaPCSg 416 (456)
|++.+|++ ..++++.+|+..+... ..++||+|++|||..+
T Consensus 165 N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~ 207 (286)
T PF10672_consen 165 NAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFA 207 (286)
T ss_dssp HHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEE
T ss_pred HHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCC
Confidence 99999986 5689999999875432 2368999999999874
No 58
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.06 E-value=6e-10 Score=117.09 Aligned_cols=89 Identities=21% Similarity=0.275 Sum_probs=75.0
Q ss_pred HHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---C
Q 012783 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---S 401 (456)
Q Consensus 325 v~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---~ 401 (456)
+...+.+.++++|||+|||+|..++.+|.. ..+|+|+|+++.+++.+++|++.+|+.| ++++++|+..+... .
T Consensus 284 ~~~~l~~~~~~~vLDl~cG~G~~sl~la~~---~~~V~~vE~~~~av~~a~~n~~~~~~~n-v~~~~~d~~~~l~~~~~~ 359 (431)
T TIGR00479 284 ALEALELQGEELVVDAYCGVGTFTLPLAKQ---AKSVVGIEVVPESVEKAQQNAELNGIAN-VEFLAGTLETVLPKQPWA 359 (431)
T ss_pred HHHHhccCCCCEEEEcCCCcCHHHHHHHHh---CCEEEEEEcCHHHHHHHHHHHHHhCCCc-eEEEeCCHHHHHHHHHhc
Confidence 344556778899999999999999999986 3589999999999999999999999976 89999999764221 1
Q ss_pred CCCccEEEEcCCCCCC
Q 012783 402 TVKCDKVLLDAPCSGL 417 (456)
Q Consensus 402 ~~~fD~VllDaPCSg~ 417 (456)
...||.|++|||++|.
T Consensus 360 ~~~~D~vi~dPPr~G~ 375 (431)
T TIGR00479 360 GQIPDVLLLDPPRKGC 375 (431)
T ss_pred CCCCCEEEECcCCCCC
Confidence 2479999999999874
No 59
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.06 E-value=6.2e-10 Score=114.89 Aligned_cols=86 Identities=21% Similarity=0.292 Sum_probs=72.3
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEE
Q 012783 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 408 (456)
Q Consensus 329 l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~V 408 (456)
++..++.+|||+|||+|..++.++.. ...|+++|+++..++.+++|++.+|+++ ++++++|+..+.......||.|
T Consensus 229 l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~-~~~~~~d~~~~~~~~~~~~D~v 304 (374)
T TIGR02085 229 VREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDN-LSFAALDSAKFATAQMSAPELV 304 (374)
T ss_pred HHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHHHHhcCCCCCEE
Confidence 34446789999999999999999964 4689999999999999999999999975 8999999976543222469999
Q ss_pred EEcCCCCCCc
Q 012783 409 LLDAPCSGLG 418 (456)
Q Consensus 409 llDaPCSg~G 418 (456)
++|||..|.+
T Consensus 305 i~DPPr~G~~ 314 (374)
T TIGR02085 305 LVNPPRRGIG 314 (374)
T ss_pred EECCCCCCCc
Confidence 9999997653
No 60
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.04 E-value=1.8e-09 Score=101.38 Aligned_cols=98 Identities=15% Similarity=0.212 Sum_probs=81.4
Q ss_pred ccccccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEec
Q 012783 313 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 392 (456)
Q Consensus 313 G~~~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~ 392 (456)
|.-..|.+...++...+.+.++++|||+|||+|..+..++... +.++|+++|+++.+++.+++|++++++.+ ++++++
T Consensus 20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~-v~~~~~ 97 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKN-VEVIEG 97 (196)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCC-eEEEEC
Confidence 4456688888888889999999999999999999999998764 45899999999999999999999999876 899999
Q ss_pred ccccccccCCCCccEEEEcC
Q 012783 393 DLRTFADNSTVKCDKVLLDA 412 (456)
Q Consensus 393 Da~~~~~~~~~~fD~VllDa 412 (456)
|+..........+|.|++|.
T Consensus 98 d~~~~~~~~~~~~d~v~~~~ 117 (196)
T PRK07402 98 SAPECLAQLAPAPDRVCIEG 117 (196)
T ss_pred chHHHHhhCCCCCCEEEEEC
Confidence 98653222224578888874
No 61
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.04 E-value=8e-10 Score=102.12 Aligned_cols=82 Identities=23% Similarity=0.295 Sum_probs=72.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCC--CccEEE
Q 012783 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV--KCDKVL 409 (456)
Q Consensus 332 ~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~--~fD~Vl 409 (456)
-+|.+|||++||+|..++..+++ +...++.+|.|.+.+..+++|++.+++...+.++..|+..+...... .||+|+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVf 119 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVF 119 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEE
Confidence 46999999999999999999997 57899999999999999999999999887889999999865443333 499999
Q ss_pred EcCCCC
Q 012783 410 LDAPCS 415 (456)
Q Consensus 410 lDaPCS 415 (456)
+|||.-
T Consensus 120 lDPPy~ 125 (187)
T COG0742 120 LDPPYA 125 (187)
T ss_pred eCCCCc
Confidence 999996
No 62
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.04 E-value=2.6e-09 Score=91.58 Aligned_cols=86 Identities=26% Similarity=0.394 Sum_probs=71.4
Q ss_pred HHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCC
Q 012783 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404 (456)
Q Consensus 325 v~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~ 404 (456)
+...+.+.++++|||+|||+|..+..+++.++ .++|+++|+++.+++.++++++.+++.+ ++++.+|+.........+
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVSN-IVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCCc-eEEEeccccccChhhcCC
Confidence 34556777789999999999999999999865 4899999999999999999999998875 788889876533233368
Q ss_pred ccEEEEcC
Q 012783 405 CDKVLLDA 412 (456)
Q Consensus 405 fD~VllDa 412 (456)
||.|+++.
T Consensus 89 ~D~v~~~~ 96 (124)
T TIGR02469 89 PDRVFIGG 96 (124)
T ss_pred CCEEEECC
Confidence 99999954
No 63
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.03 E-value=1.5e-09 Score=103.08 Aligned_cols=95 Identities=22% Similarity=0.250 Sum_probs=83.6
Q ss_pred chHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEe-cccccc
Q 012783 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH-ADLRTF 397 (456)
Q Consensus 319 d~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~-~Da~~~ 397 (456)
.+...++..++...+..+||++|++.|..|+.||..++.+|+|+++|+++++.+.+++|+++.|+.++|..+. +|+.+.
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 5666677777778889999999999999999999999878999999999999999999999999999888888 598765
Q ss_pred ccc-CCCCccEEEEcCC
Q 012783 398 ADN-STVKCDKVLLDAP 413 (456)
Q Consensus 398 ~~~-~~~~fD~VllDaP 413 (456)
... ..++||.||+|+-
T Consensus 125 l~~~~~~~fDliFIDad 141 (219)
T COG4122 125 LSRLLDGSFDLVFIDAD 141 (219)
T ss_pred HHhccCCCccEEEEeCC
Confidence 543 4589999999973
No 64
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.02 E-value=2.5e-09 Score=101.61 Aligned_cols=99 Identities=14% Similarity=0.166 Sum_probs=80.0
Q ss_pred ccccccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEec
Q 012783 313 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 392 (456)
Q Consensus 313 G~~~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~ 392 (456)
|....+......+...+.++++++|||+|||+|..|..++... ++|+++|+++.+++.++++++++|+.+ +.++++
T Consensus 58 ~~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~ 133 (212)
T PRK00312 58 GQTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHG 133 (212)
T ss_pred CCeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEEC
Confidence 3334444445566777889999999999999999999888763 589999999999999999999999987 899999
Q ss_pred ccccccccCCCCccEEEEcCCCCC
Q 012783 393 DLRTFADNSTVKCDKVLLDAPCSG 416 (456)
Q Consensus 393 Da~~~~~~~~~~fD~VllDaPCSg 416 (456)
|+...... .++||+|+++++|..
T Consensus 134 d~~~~~~~-~~~fD~I~~~~~~~~ 156 (212)
T PRK00312 134 DGWKGWPA-YAPFDRILVTAAAPE 156 (212)
T ss_pred CcccCCCc-CCCcCEEEEccCchh
Confidence 98653222 368999999987753
No 65
>PRK04266 fibrillarin; Provisional
Probab=99.02 E-value=1.8e-09 Score=103.78 Aligned_cols=89 Identities=24% Similarity=0.319 Sum_probs=70.6
Q ss_pred HHHHHHHh--cCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccc
Q 012783 321 SAGLVVAV--VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (456)
Q Consensus 321 ss~lv~~~--l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~ 398 (456)
++.++..+ +.+.+|++|||+|||+|+++.+++..++ .|+|+|+|+++.+++.+.++++.. .| |.++.+|+....
T Consensus 58 ~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--~n-v~~i~~D~~~~~ 133 (226)
T PRK04266 58 AAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--KN-IIPILADARKPE 133 (226)
T ss_pred HHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--CC-cEEEECCCCCcc
Confidence 44444434 7889999999999999999999999886 789999999999999888887754 44 788999986521
Q ss_pred --ccCCCCccEEEEcCC
Q 012783 399 --DNSTVKCDKVLLDAP 413 (456)
Q Consensus 399 --~~~~~~fD~VllDaP 413 (456)
....++||.|++|.+
T Consensus 134 ~~~~l~~~~D~i~~d~~ 150 (226)
T PRK04266 134 RYAHVVEKVDVIYQDVA 150 (226)
T ss_pred hhhhccccCCEEEECCC
Confidence 112356999999865
No 66
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.02 E-value=2.9e-09 Score=103.10 Aligned_cols=86 Identities=16% Similarity=0.158 Sum_probs=73.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEcC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllDa 412 (456)
.+.+|||+|||+|..+..++...+ ...|+++|+++.+++.++++++..++.+ +.++++|+.... ..++||.|++||
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~--~~~~fD~Vi~np 162 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDN-VTFLQSDWFEPL--PGGKFDLIVSNP 162 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhccC--cCCceeEEEECC
Confidence 456899999999999999998754 5799999999999999999999999975 899999986532 236899999999
Q ss_pred CCCCCccccc
Q 012783 413 PCSGLGVLSK 422 (456)
Q Consensus 413 PCSg~G~irr 422 (456)
|+...+.+..
T Consensus 163 Py~~~~~~~~ 172 (251)
T TIGR03534 163 PYIPEADIHL 172 (251)
T ss_pred CCCchhhhhh
Confidence 9998776543
No 67
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.00 E-value=4.5e-09 Score=97.17 Aligned_cols=91 Identities=23% Similarity=0.246 Sum_probs=75.3
Q ss_pred chHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccc
Q 012783 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (456)
Q Consensus 319 d~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~ 398 (456)
.+.+.++...+...++.+|||+|||+|..+..++... .+|+++|+++.+++.+++|++..++. ++++++|.....
T Consensus 5 ~~d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~d~~~~~ 79 (179)
T TIGR00537 5 AEDSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNVG--LDVVMTDLFKGV 79 (179)
T ss_pred CccHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCc--eEEEEccccccc
Confidence 3445667777777778999999999999999998852 28999999999999999999988873 788999986543
Q ss_pred ccCCCCccEEEEcCCCCCC
Q 012783 399 DNSTVKCDKVLLDAPCSGL 417 (456)
Q Consensus 399 ~~~~~~fD~VllDaPCSg~ 417 (456)
.++||.|++++|+...
T Consensus 80 ---~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 80 ---RGKFDVILFNPPYLPL 95 (179)
T ss_pred ---CCcccEEEECCCCCCC
Confidence 2589999999999644
No 68
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.99 E-value=3.5e-09 Score=106.83 Aligned_cols=88 Identities=13% Similarity=0.183 Sum_probs=75.0
Q ss_pred HHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCC
Q 012783 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403 (456)
Q Consensus 324 lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~ 403 (456)
.+...++++++++|||+|||+|..+..+++..+..+.|+++|+++++++.++++++.+|+++ +.++++|+....... .
T Consensus 71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~n-V~~i~gD~~~~~~~~-~ 148 (322)
T PRK13943 71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIEN-VIFVCGDGYYGVPEF-A 148 (322)
T ss_pred HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCChhhccccc-C
Confidence 44556778899999999999999999999987666789999999999999999999999976 889999987654332 5
Q ss_pred CccEEEEcCC
Q 012783 404 KCDKVLLDAP 413 (456)
Q Consensus 404 ~fD~VllDaP 413 (456)
+||+|+++..
T Consensus 149 ~fD~Ii~~~g 158 (322)
T PRK13943 149 PYDVIFVTVG 158 (322)
T ss_pred CccEEEECCc
Confidence 7999999744
No 69
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.99 E-value=1.7e-09 Score=111.20 Aligned_cols=81 Identities=17% Similarity=0.288 Sum_probs=68.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccC------------
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS------------ 401 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~------------ 401 (456)
+.+|||+|||+|..|+.++.. ..+|+++|+++.+++.+++|++.+|++| ++++++|+..+....
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~---~~~v~~vE~~~~ai~~a~~N~~~~~~~~-v~~~~~d~~~~l~~~~~~~~~~~~~~~ 282 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN---FRRVLATEISKPSVAAAQYNIAANGIDN-VQIIRMSAEEFTQAMNGVREFNRLKGI 282 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHhhcccccccccc
Confidence 357999999999999988875 3589999999999999999999999976 899999997653211
Q ss_pred ---CCCccEEEEcCCCCCCc
Q 012783 402 ---TVKCDKVLLDAPCSGLG 418 (456)
Q Consensus 402 ---~~~fD~VllDaPCSg~G 418 (456)
..+||.|++|||.+|.+
T Consensus 283 ~~~~~~~D~v~lDPPR~G~~ 302 (362)
T PRK05031 283 DLKSYNFSTIFVDPPRAGLD 302 (362)
T ss_pred cccCCCCCEEEECCCCCCCc
Confidence 12589999999998753
No 70
>PTZ00146 fibrillarin; Provisional
Probab=98.99 E-value=2.4e-09 Score=105.82 Aligned_cols=82 Identities=23% Similarity=0.289 Sum_probs=65.1
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc--cCCCCcc
Q 012783 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD--NSTVKCD 406 (456)
Q Consensus 329 l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~--~~~~~fD 406 (456)
+.+++|++|||+|||||++|.+++..+++.|+|+|+|+++++++.+.+.++.. +| |.++.+|++.... ...+.||
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~N-I~~I~~Da~~p~~y~~~~~~vD 204 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PN-IVPIIEDARYPQKYRMLVPMVD 204 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CC-CEEEECCccChhhhhcccCCCC
Confidence 45789999999999999999999999988899999999988776666655432 44 6788999864211 1125799
Q ss_pred EEEEcCC
Q 012783 407 KVLLDAP 413 (456)
Q Consensus 407 ~VllDaP 413 (456)
+||+|..
T Consensus 205 vV~~Dva 211 (293)
T PTZ00146 205 VIFADVA 211 (293)
T ss_pred EEEEeCC
Confidence 9999984
No 71
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.98 E-value=3.9e-09 Score=97.96 Aligned_cols=99 Identities=18% Similarity=0.204 Sum_probs=74.0
Q ss_pred cccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCc--------eEEEEeCCHHHHHHHHHHHHHcCCCceE
Q 012783 316 AVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQG--------LVYAIDINKGRLRILNETAKLHQVNSVI 387 (456)
Q Consensus 316 ~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g--------~V~AvDis~~rl~~l~~n~~r~g~~~~V 387 (456)
.++..-+..++.+.++++|+.|||-+||+|++.+..+....+.. .++++|++++.++.+++|++..|+...|
T Consensus 11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i 90 (179)
T PF01170_consen 11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI 90 (179)
T ss_dssp SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence 34445566677788899999999999999999988877654333 3899999999999999999999999889
Q ss_pred EEEecccccccccCCCCccEEEEcCCCC
Q 012783 388 RTIHADLRTFADNSTVKCDKVLLDAPCS 415 (456)
Q Consensus 388 ~~~~~Da~~~~~~~~~~fD~VllDaPCS 415 (456)
.+.+.|+..++. ..+.+|.|++|||.-
T Consensus 91 ~~~~~D~~~l~~-~~~~~d~IvtnPPyG 117 (179)
T PF01170_consen 91 DFIQWDARELPL-PDGSVDAIVTNPPYG 117 (179)
T ss_dssp EEEE--GGGGGG-TTSBSCEEEEE--ST
T ss_pred EEEecchhhccc-ccCCCCEEEECcchh
Confidence 999999999873 346899999999983
No 72
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.98 E-value=5.4e-09 Score=103.95 Aligned_cols=89 Identities=21% Similarity=0.193 Sum_probs=73.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEcCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllDaP 413 (456)
+.+|||+|||+|..++.++... +..+|+|+|+|+.+++.+++|++++++.+++.++++|..... ...+||+|++|||
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~--~~~~fDlIvsNPP 191 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL--AGQKIDIIVSNPP 191 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC--cCCCccEEEECCC
Confidence 3699999999999999999875 357999999999999999999999999777999999986532 1237999999999
Q ss_pred CCCCcccccCCC
Q 012783 414 CSGLGVLSKTCV 425 (456)
Q Consensus 414 CSg~G~irr~p~ 425 (456)
+-....+...|+
T Consensus 192 yi~~~~~~~~~~ 203 (284)
T TIGR00536 192 YIDEEDLADLPN 203 (284)
T ss_pred CCCcchhhcCCc
Confidence 987654433343
No 73
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.98 E-value=4.2e-09 Score=101.05 Aligned_cols=88 Identities=16% Similarity=0.261 Sum_probs=75.5
Q ss_pred HHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCC
Q 012783 323 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402 (456)
Q Consensus 323 ~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~ 402 (456)
..+...+.+.+|++|||+|||+|..+..+++..++.++|+++|+++.+++.++++++..++++ +.++++|+..++. ..
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~-~~ 112 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHN-VELVHGNAMELPF-DD 112 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCc-eEEEEechhcCCC-CC
Confidence 345567788899999999999999999999987777899999999999999999999888865 8999999977643 24
Q ss_pred CCccEEEEcC
Q 012783 403 VKCDKVLLDA 412 (456)
Q Consensus 403 ~~fD~VllDa 412 (456)
++||.|+++-
T Consensus 113 ~~fD~V~~~~ 122 (231)
T TIGR02752 113 NSFDYVTIGF 122 (231)
T ss_pred CCccEEEEec
Confidence 6899999853
No 74
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.97 E-value=1.7e-09 Score=101.21 Aligned_cols=82 Identities=15% Similarity=0.129 Sum_probs=69.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---CCCCccEEE
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---STVKCDKVL 409 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---~~~~fD~Vl 409 (456)
+|.+|||+|||+|..++.++++ +...|+++|.++..++.+++|++.+++.++++++++|+..+... ....||+|+
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR--GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIY 126 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEE
Confidence 5889999999999999999987 34589999999999999999999999976689999999654321 112489999
Q ss_pred EcCCCCC
Q 012783 410 LDAPCSG 416 (456)
Q Consensus 410 lDaPCSg 416 (456)
+|||...
T Consensus 127 ~DPPy~~ 133 (189)
T TIGR00095 127 LDPPFFN 133 (189)
T ss_pred ECcCCCC
Confidence 9999963
No 75
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.97 E-value=2.6e-09 Score=109.40 Aligned_cols=80 Identities=18% Similarity=0.369 Sum_probs=68.0
Q ss_pred CeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccC-------------
Q 012783 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS------------- 401 (456)
Q Consensus 335 ~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~------------- 401 (456)
++|||+|||+|.+++.++... ..|+|+|+++++++.+++|++.+|+.+ +.++++|+..+....
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 274 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDN-VQIIRMSAEEFTQAMNGVREFRRLKGID 274 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEEcCHHHHHHHHhhccccccccccc
Confidence 479999999999999998863 589999999999999999999999987 899999997754310
Q ss_pred --CCCccEEEEcCCCCCCc
Q 012783 402 --TVKCDKVLLDAPCSGLG 418 (456)
Q Consensus 402 --~~~fD~VllDaPCSg~G 418 (456)
...||.|++|||-+|.+
T Consensus 275 ~~~~~~d~v~lDPPR~G~~ 293 (353)
T TIGR02143 275 LKSYNCSTIFVDPPRAGLD 293 (353)
T ss_pred cccCCCCEEEECCCCCCCc
Confidence 12489999999988764
No 76
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.96 E-value=4.9e-09 Score=97.92 Aligned_cols=76 Identities=20% Similarity=0.224 Sum_probs=67.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEcC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllDa 412 (456)
++.+|||+|||+|..+..++... +.++|+++|+++.+++.++++++..++++ ++++++|+..+.. .++||.|+++.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~--~~~fDlV~~~~ 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ--EEKFDVVTSRA 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC--CCCccEEEEcc
Confidence 48999999999999999999864 46899999999999999999999999987 9999999988654 46899999863
No 77
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.96 E-value=1.3e-09 Score=103.30 Aligned_cols=93 Identities=20% Similarity=0.280 Sum_probs=76.2
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc-
Q 012783 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN- 400 (456)
Q Consensus 322 s~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~- 400 (456)
.+++..++......+||++|++.|.-|+.+|+.+++.|+|+++|+++++.+.+++++++.|+.++|+++.+|+.+....
T Consensus 34 g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l 113 (205)
T PF01596_consen 34 GQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPEL 113 (205)
T ss_dssp HHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHH
Confidence 3344444444456799999999999999999999888999999999999999999999999998999999999764321
Q ss_pred ---C-CCCccEEEEcCCC
Q 012783 401 ---S-TVKCDKVLLDAPC 414 (456)
Q Consensus 401 ---~-~~~fD~VllDaPC 414 (456)
. .++||.||+|+.=
T Consensus 114 ~~~~~~~~fD~VFiDa~K 131 (205)
T PF01596_consen 114 ANDGEEGQFDFVFIDADK 131 (205)
T ss_dssp HHTTTTTSEEEEEEESTG
T ss_pred HhccCCCceeEEEEcccc
Confidence 1 3589999999863
No 78
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.95 E-value=5.7e-09 Score=107.87 Aligned_cols=105 Identities=19% Similarity=0.114 Sum_probs=79.0
Q ss_pred ccccccchHHHHHHHhcC-CCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEe
Q 012783 313 GLCAVQDESAGLVVAVVD-PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391 (456)
Q Consensus 313 G~~~vQd~ss~lv~~~l~-~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~ 391 (456)
|.+....+...++..++. ..++.+|||+|||+|..++.++... +..+|+|+|+|+.+++.+++|+++++. ++.+++
T Consensus 230 ~vLIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~ 306 (423)
T PRK14966 230 NVLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGA--RVEFAH 306 (423)
T ss_pred CccCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEE
Confidence 334444444444444443 3467799999999999999998764 467999999999999999999999886 389999
Q ss_pred cccccccccCCCCccEEEEcCCCCCCccc
Q 012783 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVL 420 (456)
Q Consensus 392 ~Da~~~~~~~~~~fD~VllDaPCSg~G~i 420 (456)
+|.........++||.|++|||....+..
T Consensus 307 gDl~e~~l~~~~~FDLIVSNPPYI~~~e~ 335 (423)
T PRK14966 307 GSWFDTDMPSEGKWDIIVSNPPYIENGDK 335 (423)
T ss_pred cchhccccccCCCccEEEECCCCCCcchh
Confidence 99865321123579999999999776643
No 79
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.95 E-value=2.2e-09 Score=106.77 Aligned_cols=93 Identities=22% Similarity=0.260 Sum_probs=78.9
Q ss_pred HHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCC
Q 012783 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403 (456)
Q Consensus 324 lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~ 403 (456)
-++..|.+++|+.++|++||.||.|..+++.+++.++|+|+|.++.+++.++++++. .++++++++|..++......
T Consensus 10 Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~ 86 (296)
T PRK00050 10 EVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAE 86 (296)
T ss_pred HHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHc
Confidence 356677889999999999999999999999987789999999999999999998865 34699999999876543322
Q ss_pred ---CccEEEEcCCCCCCcc
Q 012783 404 ---KCDKVLLDAPCSGLGV 419 (456)
Q Consensus 404 ---~fD~VllDaPCSg~G~ 419 (456)
+||.|++|--||..-.
T Consensus 87 ~~~~vDgIl~DLGvSs~Ql 105 (296)
T PRK00050 87 GLGKVDGILLDLGVSSPQL 105 (296)
T ss_pred CCCccCEEEECCCcccccc
Confidence 7999999999987643
No 80
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.95 E-value=5e-09 Score=107.74 Aligned_cols=94 Identities=14% Similarity=0.056 Sum_probs=78.7
Q ss_pred chHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEEeccccc
Q 012783 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN--SVIRTIHADLRT 396 (456)
Q Consensus 319 d~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~--~~V~~~~~Da~~ 396 (456)
|..+.+....+....+.+|||+|||+|..++.+++.. +..+|+++|+|+.+++.+++|++.++.. .+++++.+|+..
T Consensus 214 D~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~ 292 (378)
T PRK15001 214 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 292 (378)
T ss_pred ChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence 7788888888877667899999999999999999874 5689999999999999999999988754 247888888754
Q ss_pred ccccCCCCccEEEEcCCCC
Q 012783 397 FADNSTVKCDKVLLDAPCS 415 (456)
Q Consensus 397 ~~~~~~~~fD~VllDaPCS 415 (456)
.. ...+||.|+++||.-
T Consensus 293 ~~--~~~~fDlIlsNPPfh 309 (378)
T PRK15001 293 GV--EPFRFNAVLCNPPFH 309 (378)
T ss_pred cC--CCCCEEEEEECcCcc
Confidence 22 235899999999985
No 81
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.94 E-value=2.6e-09 Score=100.62 Aligned_cols=85 Identities=32% Similarity=0.493 Sum_probs=64.6
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 331 ~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
.++|+.|+|++||-|.+++.+|.. .+...|+|+|+++..++.+++|++.+++.++|.++++|+..+.. ...||+|++
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--~~~~drvim 175 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--EGKFDRVIM 175 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----TT-EEEEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--ccccCEEEE
Confidence 578999999999999999999985 34578999999999999999999999999999999999998876 478999999
Q ss_pred cCCCCCCc
Q 012783 411 DAPCSGLG 418 (456)
Q Consensus 411 DaPCSg~G 418 (456)
+-|=+..-
T Consensus 176 ~lp~~~~~ 183 (200)
T PF02475_consen 176 NLPESSLE 183 (200)
T ss_dssp --TSSGGG
T ss_pred CChHHHHH
Confidence 99976553
No 82
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.93 E-value=5e-09 Score=97.41 Aligned_cols=76 Identities=14% Similarity=0.220 Sum_probs=66.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEcC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllDa 412 (456)
+|.+|||+|||+|..+..++.. .+.++|+++|+++.+++.+++++++.|+.+ ++++++|+..+.. .++||.|++++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~~~--~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDFQH--EEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhccc--cCCccEEEehh
Confidence 4889999999999999999865 456899999999999999999999999976 8999999987632 36899999975
No 83
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=4.5e-09 Score=104.29 Aligned_cols=78 Identities=21% Similarity=0.219 Sum_probs=65.4
Q ss_pred eEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEcCCCC
Q 012783 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCS 415 (456)
Q Consensus 336 ~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllDaPCS 415 (456)
+|||+|||+|..++.++... +...|+|+|+|+..++.+++|++++|+.+ +.++.+|...- ..++||+|+++||.=
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~-~~~~~~dlf~~---~~~~fDlIVsNPPYi 187 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVR-VLVVQSDLFEP---LRGKFDLIVSNPPYI 187 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCcc-EEEEeeecccc---cCCceeEEEeCCCCC
Confidence 79999999999999999875 45799999999999999999999999854 66666676542 234899999999995
Q ss_pred CCc
Q 012783 416 GLG 418 (456)
Q Consensus 416 g~G 418 (456)
-.-
T Consensus 188 p~~ 190 (280)
T COG2890 188 PAE 190 (280)
T ss_pred CCc
Confidence 443
No 84
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.93 E-value=9.7e-09 Score=95.61 Aligned_cols=92 Identities=18% Similarity=0.251 Sum_probs=76.6
Q ss_pred cccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccc
Q 012783 316 AVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395 (456)
Q Consensus 316 ~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~ 395 (456)
..++.....+...+++.++.+|||+|||+|..+..+++.. +.++|+++|+++.+++.+++|++++++.+ ++++++|+.
T Consensus 14 ~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~ 91 (187)
T PRK08287 14 MTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAP 91 (187)
T ss_pred CchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCch
Confidence 3455666677778888899999999999999999999874 46899999999999999999999998875 889999874
Q ss_pred cccccCCCCccEEEEcC
Q 012783 396 TFADNSTVKCDKVLLDA 412 (456)
Q Consensus 396 ~~~~~~~~~fD~VllDa 412 (456)
.. ...+||.|+++.
T Consensus 92 ~~---~~~~~D~v~~~~ 105 (187)
T PRK08287 92 IE---LPGKADAIFIGG 105 (187)
T ss_pred hh---cCcCCCEEEECC
Confidence 32 235799999864
No 85
>PRK14968 putative methyltransferase; Provisional
Probab=98.90 E-value=1.9e-08 Score=92.84 Aligned_cols=100 Identities=18% Similarity=0.206 Sum_probs=78.7
Q ss_pred ccccccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCce-EEEEe
Q 012783 313 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIH 391 (456)
Q Consensus 313 G~~~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~-V~~~~ 391 (456)
|.|..... +.+++..+...++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++...++.++ +.+++
T Consensus 4 ~~~~p~~~-~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~ 79 (188)
T PRK14968 4 EVYEPAED-SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIR 79 (188)
T ss_pred cccCcchh-HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEe
Confidence 34444333 455556666678899999999999999999986 47999999999999999999998888654 77888
Q ss_pred cccccccccCCCCccEEEEcCCCCCCc
Q 012783 392 ADLRTFADNSTVKCDKVLLDAPCSGLG 418 (456)
Q Consensus 392 ~Da~~~~~~~~~~fD~VllDaPCSg~G 418 (456)
+|..... ....||.|++++|+...+
T Consensus 80 ~d~~~~~--~~~~~d~vi~n~p~~~~~ 104 (188)
T PRK14968 80 SDLFEPF--RGDKFDVILFNPPYLPTE 104 (188)
T ss_pred ccccccc--cccCceEEEECCCcCCCC
Confidence 8876532 224799999999986544
No 86
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=1.1e-08 Score=100.84 Aligned_cols=93 Identities=17% Similarity=0.222 Sum_probs=80.9
Q ss_pred cchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccc
Q 012783 318 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397 (456)
Q Consensus 318 Qd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~ 397 (456)
-|..|.++.+-+....+.+|||+|||.|..++.+++.. +..+|+-+|+|...++.+++|++.+++++. .+...|...-
T Consensus 143 lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~ 220 (300)
T COG2813 143 LDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEP 220 (300)
T ss_pred cChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEeccccc
Confidence 48899999999998888899999999999999999985 478999999999999999999999999874 5667776432
Q ss_pred cccCCCCccEEEEcCCCC
Q 012783 398 ADNSTVKCDKVLLDAPCS 415 (456)
Q Consensus 398 ~~~~~~~fD~VllDaPCS 415 (456)
. .++||.|+++||--
T Consensus 221 v---~~kfd~IisNPPfh 235 (300)
T COG2813 221 V---EGKFDLIISNPPFH 235 (300)
T ss_pred c---cccccEEEeCCCcc
Confidence 2 24899999999986
No 87
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.86 E-value=1.5e-08 Score=99.68 Aligned_cols=85 Identities=16% Similarity=0.323 Sum_probs=69.3
Q ss_pred HHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHH---cCCCceEEEEeccccccccc
Q 012783 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL---HQVNSVIRTIHADLRTFADN 400 (456)
Q Consensus 324 lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r---~g~~~~V~~~~~Da~~~~~~ 400 (456)
.+...+.+.++++|||+|||+|..+..+++.+++.++|+|+|+|+++++.++++... .+.. .+.++++|+..++..
T Consensus 64 ~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~-~i~~~~~d~~~lp~~ 142 (261)
T PLN02233 64 MAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYK-NIEWIEGDATDLPFD 142 (261)
T ss_pred HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCC-CeEEEEcccccCCCC
Confidence 445566778899999999999999999998876678999999999999999887642 2233 489999999887643
Q ss_pred CCCCccEEEE
Q 012783 401 STVKCDKVLL 410 (456)
Q Consensus 401 ~~~~fD~Vll 410 (456)
+++||.|++
T Consensus 143 -~~sfD~V~~ 151 (261)
T PLN02233 143 -DCYFDAITM 151 (261)
T ss_pred -CCCEeEEEE
Confidence 468999986
No 88
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.85 E-value=1.3e-08 Score=105.18 Aligned_cols=88 Identities=22% Similarity=0.290 Sum_probs=72.0
Q ss_pred HHHHHhcCCC-CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccC
Q 012783 323 GLVVAVVDPQ-PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401 (456)
Q Consensus 323 ~lv~~~l~~~-~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~ 401 (456)
.+++..+... ++.+|||++||+|..++.++...+ ...|+++|+++..++.+++|++.+|+.+ ++++++|+..+...
T Consensus 46 ~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~~l~~- 122 (382)
T PRK04338 46 VLVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANALLHE- 122 (382)
T ss_pred HHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHHHHhh-
Confidence 3444444433 457999999999999999988753 4589999999999999999999999986 67999999775432
Q ss_pred CCCccEEEEcCC
Q 012783 402 TVKCDKVLLDAP 413 (456)
Q Consensus 402 ~~~fD~VllDaP 413 (456)
...||+|++|||
T Consensus 123 ~~~fD~V~lDP~ 134 (382)
T PRK04338 123 ERKFDVVDIDPF 134 (382)
T ss_pred cCCCCEEEECCC
Confidence 357999999998
No 89
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.84 E-value=1.2e-08 Score=99.18 Aligned_cols=95 Identities=16% Similarity=0.147 Sum_probs=80.9
Q ss_pred chHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccc
Q 012783 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (456)
Q Consensus 319 d~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~ 398 (456)
....+++..++......+||++|++.|.-|+.||..+++.|+|+++|.++++.+.+++++++.|+.++|+++.+|+.+..
T Consensus 65 ~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L 144 (247)
T PLN02589 65 ADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHH
Confidence 44555666666666678999999999999999999988889999999999999999999999999989999999997753
Q ss_pred ccC------CCCccEEEEcCC
Q 012783 399 DNS------TVKCDKVLLDAP 413 (456)
Q Consensus 399 ~~~------~~~fD~VllDaP 413 (456)
... .++||.||+|+-
T Consensus 145 ~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 145 DQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred HHHHhccccCCcccEEEecCC
Confidence 321 268999999974
No 90
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.83 E-value=2e-08 Score=92.11 Aligned_cols=85 Identities=21% Similarity=0.260 Sum_probs=71.4
Q ss_pred HHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCC
Q 012783 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403 (456)
Q Consensus 324 lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~ 403 (456)
.++..+++.++++|||+|||+|..|..+++. .++|+++|+++.+++.+++++.. .. +++++++|+..++... .
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~~-~v~ii~~D~~~~~~~~-~ 76 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--AD-NLTVIHGDALKFDLPK-L 76 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--CC-CEEEEECchhcCCccc-c
Confidence 3456677888999999999999999999986 46899999999999999998854 33 4889999998875432 4
Q ss_pred CccEEEEcCCCC
Q 012783 404 KCDKVLLDAPCS 415 (456)
Q Consensus 404 ~fD~VllDaPCS 415 (456)
.||.|+.|+|..
T Consensus 77 ~~d~vi~n~Py~ 88 (169)
T smart00650 77 QPYKVVGNLPYN 88 (169)
T ss_pred CCCEEEECCCcc
Confidence 699999999986
No 91
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.82 E-value=2.6e-08 Score=101.53 Aligned_cols=91 Identities=12% Similarity=0.166 Sum_probs=76.2
Q ss_pred cchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccc
Q 012783 318 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397 (456)
Q Consensus 318 Qd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~ 397 (456)
.|..+.++...+......+|||+|||+|..+..++... +..+|+++|+++.+++.+++|++..++.. .++.+|....
T Consensus 181 lD~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~~--~~~~~D~~~~ 257 (342)
T PRK09489 181 LDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLEG--EVFASNVFSD 257 (342)
T ss_pred CCHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCC--EEEEcccccc
Confidence 47788888888776666799999999999999999874 45789999999999999999999998864 5677887542
Q ss_pred cccCCCCccEEEEcCCC
Q 012783 398 ADNSTVKCDKVLLDAPC 414 (456)
Q Consensus 398 ~~~~~~~fD~VllDaPC 414 (456)
..++||.|+++||-
T Consensus 258 ---~~~~fDlIvsNPPF 271 (342)
T PRK09489 258 ---IKGRFDMIISNPPF 271 (342)
T ss_pred ---cCCCccEEEECCCc
Confidence 24689999999995
No 92
>PHA03412 putative methyltransferase; Provisional
Probab=98.81 E-value=2.8e-08 Score=95.37 Aligned_cols=94 Identities=16% Similarity=0.213 Sum_probs=71.8
Q ss_pred cccccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcC--CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEe
Q 012783 314 LCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS--GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391 (456)
Q Consensus 314 ~~~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~--~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~ 391 (456)
+|+..+.+..++.. ...+.+|||+|||+|..++.++..+. +...|+|+|+++.+++.+++|.. + +.+++
T Consensus 33 FfTP~~iAr~~~i~---~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----~-~~~~~ 103 (241)
T PHA03412 33 FFTPIGLARDFTID---ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----E-ATWIN 103 (241)
T ss_pred cCCCHHHHHHHHHh---ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----C-CEEEE
Confidence 34555555544332 23478999999999999999998763 35699999999999999998753 2 67889
Q ss_pred cccccccccCCCCccEEEEcCCCCCCc
Q 012783 392 ADLRTFADNSTVKCDKVLLDAPCSGLG 418 (456)
Q Consensus 392 ~Da~~~~~~~~~~fD~VllDaPCSg~G 418 (456)
+|+..... ..+||.|+.+||..-..
T Consensus 104 ~D~~~~~~--~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 104 ADALTTEF--DTLFDMAISNPPFGKIK 128 (241)
T ss_pred cchhcccc--cCCccEEEECCCCCCcc
Confidence 99876542 35899999999998644
No 93
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=3e-08 Score=95.52 Aligned_cols=99 Identities=18% Similarity=0.339 Sum_probs=85.8
Q ss_pred ccccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccc
Q 012783 315 CAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394 (456)
Q Consensus 315 ~~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da 394 (456)
.|.-|. .++...|++.||.+|++.|+|+|+.+..++..+++.|+++.+|+++.|.+.+.+.+++.|+.+.|++.+.|.
T Consensus 89 ~Yt~Di--a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDV 166 (314)
T KOG2915|consen 89 LYTPDI--AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDV 166 (314)
T ss_pred EecccH--HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeec
Confidence 344444 477889999999999999999999999999999999999999999999999999999999998899999998
Q ss_pred ccccccC-CCCccEEEEcCCCC
Q 012783 395 RTFADNS-TVKCDKVLLDAPCS 415 (456)
Q Consensus 395 ~~~~~~~-~~~fD~VllDaPCS 415 (456)
....... +..+|.|++|.|-=
T Consensus 167 c~~GF~~ks~~aDaVFLDlPaP 188 (314)
T KOG2915|consen 167 CGSGFLIKSLKADAVFLDLPAP 188 (314)
T ss_pred ccCCccccccccceEEEcCCCh
Confidence 6533222 46899999998754
No 94
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.80 E-value=2.9e-08 Score=106.25 Aligned_cols=84 Identities=18% Similarity=0.169 Sum_probs=72.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEcC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllDa 412 (456)
++.+|||+|||+|..++.++... +..+|+|+|+|+.+++.+++|++.+++.+++.++++|+.... ..++||.|++||
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~--~~~~fDlIvsNP 214 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI--EKQKFDFIVSNP 214 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC--cCCCccEEEECC
Confidence 45789999999999999999876 457999999999999999999999998777999999975432 135899999999
Q ss_pred CCCCCcc
Q 012783 413 PCSGLGV 419 (456)
Q Consensus 413 PCSg~G~ 419 (456)
|......
T Consensus 215 PYi~~~~ 221 (506)
T PRK01544 215 PYISHSE 221 (506)
T ss_pred CCCCchh
Confidence 9987654
No 95
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.78 E-value=3.4e-08 Score=97.32 Aligned_cols=82 Identities=13% Similarity=0.234 Sum_probs=70.8
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEE
Q 012783 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 408 (456)
Q Consensus 329 l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~V 408 (456)
..+.+|++|||+|||+|..+..++..++..++|+++|+++.+++.++++.+..|+.+ ++++.+|+..++.. .+.||.|
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~-v~~~~~d~~~l~~~-~~~fD~V 150 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTN-VEFRLGEIEALPVA-DNSVDVI 150 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCC-EEEEEcchhhCCCC-CCceeEE
Confidence 457789999999999999988888887777899999999999999999999999875 88999998776532 3689999
Q ss_pred EEcC
Q 012783 409 LLDA 412 (456)
Q Consensus 409 llDa 412 (456)
+.+.
T Consensus 151 i~~~ 154 (272)
T PRK11873 151 ISNC 154 (272)
T ss_pred EEcC
Confidence 9873
No 96
>PLN02244 tocopherol O-methyltransferase
Probab=98.77 E-value=4.4e-08 Score=99.96 Aligned_cols=76 Identities=20% Similarity=0.135 Sum_probs=67.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 332 ~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
.++.+|||+|||+|+.+..+++.. .++|+++|+++.+++.++++++..|+.++++++++|+..++.. .+.||.|++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~-~~~FD~V~s 192 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFE-DGQFDLVWS 192 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCC-CCCccEEEE
Confidence 678999999999999999999875 4699999999999999999999999876799999999876533 478999987
No 97
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.77 E-value=4.6e-08 Score=97.67 Aligned_cols=98 Identities=14% Similarity=0.098 Sum_probs=81.1
Q ss_pred ccccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccc
Q 012783 315 CAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394 (456)
Q Consensus 315 ~~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da 394 (456)
|.++......++..+++.+++.|||+|||+|..|..+++. .++|+|+|+|+.+++.+++++...+...+++++++|+
T Consensus 18 FL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da 94 (294)
T PTZ00338 18 ILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA 94 (294)
T ss_pred ccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence 3344455556777788889999999999999999999886 4689999999999999999998877544599999999
Q ss_pred ccccccCCCCccEEEEcCCCCCCc
Q 012783 395 RTFADNSTVKCDKVLLDAPCSGLG 418 (456)
Q Consensus 395 ~~~~~~~~~~fD~VllDaPCSg~G 418 (456)
..... ..||.|+.+.|...+.
T Consensus 95 l~~~~---~~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 95 LKTEF---PYFDVCVANVPYQISS 115 (294)
T ss_pred hhhcc---cccCEEEecCCcccCc
Confidence 76532 4689999999998554
No 98
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.77 E-value=2.9e-08 Score=93.81 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=67.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccc-ccccc-cCCCCccEEEE
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTFAD-NSTVKCDKVLL 410 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da-~~~~~-~~~~~fD~Vll 410 (456)
++.+|||+|||+|..+..++... +.++|+++|+++++++.++++++..++++ +.++++|+ ..++. ...+.||.|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTN-LRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCC-EEEEecCHHHHHHHHcCccccceEEE
Confidence 57899999999999999999875 45789999999999999999999998876 89999999 55542 22468999999
Q ss_pred cCC
Q 012783 411 DAP 413 (456)
Q Consensus 411 DaP 413 (456)
..|
T Consensus 118 ~~~ 120 (202)
T PRK00121 118 NFP 120 (202)
T ss_pred ECC
Confidence 654
No 99
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.76 E-value=3.5e-08 Score=96.50 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=67.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEc
Q 012783 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (456)
Q Consensus 332 ~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllD 411 (456)
.++.+|||+|||+|..+..+++. ..+|+++|+++++++.++++++..|+.++++++++|+..+.....++||+|++.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~ 119 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFH 119 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEeh
Confidence 45789999999999999999985 468999999999999999999999987668999999987654445789999975
Q ss_pred CC
Q 012783 412 AP 413 (456)
Q Consensus 412 aP 413 (456)
..
T Consensus 120 ~v 121 (255)
T PRK11036 120 AV 121 (255)
T ss_pred hH
Confidence 44
No 100
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.76 E-value=2.6e-08 Score=96.03 Aligned_cols=93 Identities=20% Similarity=0.174 Sum_probs=75.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccc----ccccCCCCccEE
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNSTVKCDKV 408 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~----~~~~~~~~fD~V 408 (456)
.+..|||+|||+|..++.++..++ +++|+|+|.++..+..+.+|++++++.+++.+++.+... --....++.|.+
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 456899999999999999999887 799999999999999999999999999999888664432 111234789999
Q ss_pred EEcCCCCCCcccc-cCCCc
Q 012783 409 LLDAPCSGLGVLS-KTCVG 426 (456)
Q Consensus 409 llDaPCSg~G~ir-r~p~~ 426 (456)
+++||.--.--++ -+||+
T Consensus 227 vsNPPYI~~dD~~~l~~eV 245 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEV 245 (328)
T ss_pred ecCCCcccccchhhcCchh
Confidence 9999996554433 36664
No 101
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.76 E-value=5e-08 Score=91.81 Aligned_cols=84 Identities=20% Similarity=0.173 Sum_probs=69.9
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccC
Q 012783 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401 (456)
Q Consensus 322 s~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~ 401 (456)
+..+...+...++.+|||+|||+|..+.++++. ..+|+|+|+|+.+++.++++++..++.+ +++..+|+..++.
T Consensus 19 ~~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~-- 92 (197)
T PRK11207 19 HSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLTF-- 92 (197)
T ss_pred hHHHHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCCc--
Confidence 345566677778899999999999999999985 4689999999999999999999988876 7888899876532
Q ss_pred CCCccEEEEc
Q 012783 402 TVKCDKVLLD 411 (456)
Q Consensus 402 ~~~fD~VllD 411 (456)
.+.||.|++-
T Consensus 93 ~~~fD~I~~~ 102 (197)
T PRK11207 93 DGEYDFILST 102 (197)
T ss_pred CCCcCEEEEe
Confidence 3579999864
No 102
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.76 E-value=4.3e-08 Score=96.37 Aligned_cols=87 Identities=17% Similarity=0.299 Sum_probs=75.7
Q ss_pred cchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccc
Q 012783 318 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397 (456)
Q Consensus 318 Qd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~ 397 (456)
|-..-.++...|.++||++|||+|||-|+.+.++|+.. +.+|+++++|++..+.+++.++..|+..+|++...|.+.+
T Consensus 57 Q~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~ 134 (283)
T COG2230 57 QRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF 134 (283)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc
Confidence 44444566777899999999999999999999999986 5799999999999999999999999997799999998765
Q ss_pred cccCCCCccEEEE
Q 012783 398 ADNSTVKCDKVLL 410 (456)
Q Consensus 398 ~~~~~~~fD~Vll 410 (456)
. ++||+|+.
T Consensus 135 ~----e~fDrIvS 143 (283)
T COG2230 135 E----EPFDRIVS 143 (283)
T ss_pred c----cccceeee
Confidence 4 45999874
No 103
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.75 E-value=3.5e-08 Score=97.59 Aligned_cols=87 Identities=18% Similarity=0.291 Sum_probs=67.0
Q ss_pred cchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccc
Q 012783 318 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397 (456)
Q Consensus 318 Qd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~ 397 (456)
|..--..+...++++||++|||+|||.|+.+..+|+.. +.+|+++.+|++..+.+++.+++.|+.+.|++...|..++
T Consensus 47 Q~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~ 124 (273)
T PF02353_consen 47 QERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL 124 (273)
T ss_dssp HHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc
Confidence 44444467778899999999999999999999999986 4799999999999999999999999999999999998765
Q ss_pred cccCCCCccEEEE
Q 012783 398 ADNSTVKCDKVLL 410 (456)
Q Consensus 398 ~~~~~~~fD~Vll 410 (456)
+ .+||+|+.
T Consensus 125 ~----~~fD~IvS 133 (273)
T PF02353_consen 125 P----GKFDRIVS 133 (273)
T ss_dssp ------S-SEEEE
T ss_pred C----CCCCEEEE
Confidence 4 38999876
No 104
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.75 E-value=4.3e-08 Score=91.38 Aligned_cols=80 Identities=26% Similarity=0.361 Sum_probs=60.4
Q ss_pred hcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccc-------cc
Q 012783 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-------DN 400 (456)
Q Consensus 328 ~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~-------~~ 400 (456)
...+.+|++|||+|||||+.+..++....+.++|+++|+++.+ +..+ +.++++|+.... ..
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~-i~~~~~d~~~~~~~~~l~~~~ 94 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIEN-VDFIRGDFTDEEVLNKIRERV 94 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCC-ceEEEeeCCChhHHHHHHHHh
Confidence 4456789999999999999999999987667899999999864 2333 678888876532 11
Q ss_pred CCCCccEEEEcCCCCCCcc
Q 012783 401 STVKCDKVLLDAPCSGLGV 419 (456)
Q Consensus 401 ~~~~fD~VllDaPCSg~G~ 419 (456)
..++||+|++|+++...|.
T Consensus 95 ~~~~~D~V~~~~~~~~~g~ 113 (188)
T TIGR00438 95 GDDKVDVVMSDAAPNISGY 113 (188)
T ss_pred CCCCccEEEcCCCCCCCCC
Confidence 2357999999976544443
No 105
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.71 E-value=3.8e-08 Score=82.17 Aligned_cols=71 Identities=23% Similarity=0.240 Sum_probs=58.4
Q ss_pred EEEEcCCCchHHHHHHHHc--CCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 337 IVDCCAAPGGKTLYMASCL--SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 337 VLDlcAGpGgkt~~la~~~--~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
|||+|||+|..+..++... ++..+++++|+++++++.++++....+.. ++++++|+..++.. .++||.|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~--~~~~~~D~~~l~~~-~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPK--VRFVQADARDLPFS-DGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTT--SEEEESCTTCHHHH-SSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCc--eEEEECCHhHCccc-CCCeeEEEE
Confidence 7999999999999999986 22379999999999999999999887773 78999999987654 369999998
No 106
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.70 E-value=4.3e-08 Score=98.99 Aligned_cols=84 Identities=29% Similarity=0.438 Sum_probs=74.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEc
Q 012783 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (456)
Q Consensus 332 ~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllD 411 (456)
.+|++|+||.||-|.+|+.+|.. +...|+|+|+|+..++.+++|++.+++.++|..+++|++.+.... +.||+|++.
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~--g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~-~~aDrIim~ 263 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKK--GRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL-GVADRIIMG 263 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhc--CCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc-ccCCEEEeC
Confidence 45999999999999999999986 334499999999999999999999999999999999999887654 689999999
Q ss_pred CCCCCCc
Q 012783 412 APCSGLG 418 (456)
Q Consensus 412 aPCSg~G 418 (456)
-|=+...
T Consensus 264 ~p~~a~~ 270 (341)
T COG2520 264 LPKSAHE 270 (341)
T ss_pred CCCcchh
Confidence 9976443
No 107
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.69 E-value=7.2e-08 Score=90.50 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=68.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc--CCCCccEEE
Q 012783 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDKVL 409 (456)
Q Consensus 332 ~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~--~~~~fD~Vl 409 (456)
..+..|||+|||+|..+..+|... +.+.|+++|++..+++.+++++++.++.| +.++++|+..+... ..+.||.|+
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~n-i~~i~~d~~~~~~~~~~~~~~d~v~ 92 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKN-LHVLCGDANELLDKFFPDGSLSKVF 92 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCC-EEEEccCHHHHHHhhCCCCceeEEE
Confidence 346799999999999999999875 56899999999999999999999999986 89999999775432 235799999
Q ss_pred EcCC
Q 012783 410 LDAP 413 (456)
Q Consensus 410 lDaP 413 (456)
++.|
T Consensus 93 ~~~p 96 (194)
T TIGR00091 93 LNFP 96 (194)
T ss_pred EECC
Confidence 9876
No 108
>PRK10742 putative methyltransferase; Provisional
Probab=98.68 E-value=8.5e-08 Score=92.54 Aligned_cols=92 Identities=21% Similarity=0.153 Sum_probs=78.9
Q ss_pred HHHHHHhcCCCCCC--eEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHc------CC--CceEEEEe
Q 012783 322 AGLVVAVVDPQPGQ--SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH------QV--NSVIRTIH 391 (456)
Q Consensus 322 s~lv~~~l~~~~g~--~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~------g~--~~~V~~~~ 391 (456)
...++.++.+++|. +|||++||.|.-++.++++ .+.|+++|.++.....+++++++. +. ..++++++
T Consensus 75 ~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred ccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 35778889999988 9999999999999999987 467999999999999999999996 32 24589999
Q ss_pred cccccccccCCCCccEEEEcCCCCC
Q 012783 392 ADLRTFADNSTVKCDKVLLDAPCSG 416 (456)
Q Consensus 392 ~Da~~~~~~~~~~fD~VllDaPCSg 416 (456)
+|+..+.......||+|++|||.-.
T Consensus 152 ~da~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred CcHHHHHhhCCCCCcEEEECCCCCC
Confidence 9998876655457999999999864
No 109
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.67 E-value=1.1e-07 Score=92.75 Aligned_cols=77 Identities=21% Similarity=0.265 Sum_probs=65.7
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEE
Q 012783 331 PQPGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409 (456)
Q Consensus 331 ~~~g~~VLDlcAGpGgkt~~la~~~-~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vl 409 (456)
+.++.+|||+|||+|..+..+++.+ .+.++|+++|+|+.+++.++++++..+..+++.++++|+..++. ..+|.|+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~---~~~D~vv 130 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI---ENASMVV 130 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC---CCCCEEe
Confidence 3478899999999999999988864 35689999999999999999999998887679999999877643 3588877
Q ss_pred E
Q 012783 410 L 410 (456)
Q Consensus 410 l 410 (456)
+
T Consensus 131 ~ 131 (247)
T PRK15451 131 L 131 (247)
T ss_pred h
Confidence 5
No 110
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.67 E-value=7.7e-08 Score=99.02 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=68.7
Q ss_pred CeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEcCC
Q 012783 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413 (456)
Q Consensus 335 ~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllDaP 413 (456)
-+|||++||+|..++.++...++...|+++|+++..++.+++|++.+++.+ ++++++|+..+......+||+|.+||+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~-~~v~~~Da~~~l~~~~~~fDvIdlDPf 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVEN-IEVPNEDAANVLRYRNRKFHVIDIDPF 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEchhHHHHHHHhCCCCCEEEeCCC
Confidence 489999999999999999876555789999999999999999999999876 789999998775543457999999997
No 111
>PLN03075 nicotianamine synthase; Provisional
Probab=98.66 E-value=1.1e-07 Score=94.48 Aligned_cols=78 Identities=13% Similarity=0.043 Sum_probs=65.9
Q ss_pred CCCeEEEEcCCCchHHHHH-HHHcCCCceEEEEeCCHHHHHHHHHHHHH-cCCCceEEEEecccccccccCCCCccEEEE
Q 012783 333 PGQSIVDCCAAPGGKTLYM-ASCLSGQGLVYAIDINKGRLRILNETAKL-HQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~l-a~~~~~~g~V~AvDis~~rl~~l~~n~~r-~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
++++|+|+|||||+.|..+ +....++++++++|+++++++.++++++. .|+.++|++..+|+.+.... .+.||+|++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~-l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES-LKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc-cCCcCEEEE
Confidence 6799999999999886554 44456789999999999999999999965 89988899999999875432 368999999
Q ss_pred c
Q 012783 411 D 411 (456)
Q Consensus 411 D 411 (456)
+
T Consensus 202 ~ 202 (296)
T PLN03075 202 A 202 (296)
T ss_pred e
Confidence 9
No 112
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.65 E-value=1.4e-07 Score=90.30 Aligned_cols=86 Identities=17% Similarity=0.280 Sum_probs=75.5
Q ss_pred HHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCC-----ceEEEEeCCHHHHHHHHHHHHHcCCCce--EEEEeccccc
Q 012783 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ-----GLVYAIDINKGRLRILNETAKLHQVNSV--IRTIHADLRT 396 (456)
Q Consensus 324 lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~-----g~V~AvDis~~rl~~l~~n~~r~g~~~~--V~~~~~Da~~ 396 (456)
..+..|+|.+|.+|||+|+|+|..|.-+...++.. ++|+.+|+|+++|..++++.++.++... +.++++||..
T Consensus 91 ~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~ 170 (296)
T KOG1540|consen 91 MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED 170 (296)
T ss_pred HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc
Confidence 44667889999999999999999999999998764 8999999999999999999988887754 8899999999
Q ss_pred ccccCCCCccEEEE
Q 012783 397 FADNSTVKCDKVLL 410 (456)
Q Consensus 397 ~~~~~~~~fD~Vll 410 (456)
++ .++.+||+..+
T Consensus 171 Lp-Fdd~s~D~yTi 183 (296)
T KOG1540|consen 171 LP-FDDDSFDAYTI 183 (296)
T ss_pred CC-CCCCcceeEEE
Confidence 88 44578998876
No 113
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.63 E-value=1.6e-07 Score=92.13 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=76.1
Q ss_pred ccccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccc
Q 012783 315 CAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394 (456)
Q Consensus 315 ~~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da 394 (456)
|.+.......++..+++.++++|||+|||+|..|..+++. ..+|+++|+++.+++.+++++.. .+ +++++++|+
T Consensus 11 fl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~--~~-~v~ii~~D~ 84 (258)
T PRK14896 11 FLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA--AG-NVEIIEGDA 84 (258)
T ss_pred ccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc--CC-CEEEEEecc
Confidence 3444455566777788889999999999999999999987 36899999999999999988764 33 489999999
Q ss_pred ccccccCCCCccEEEEcCCCCC
Q 012783 395 RTFADNSTVKCDKVLLDAPCSG 416 (456)
Q Consensus 395 ~~~~~~~~~~fD~VllDaPCSg 416 (456)
..++. ..||.|+.++|..-
T Consensus 85 ~~~~~---~~~d~Vv~NlPy~i 103 (258)
T PRK14896 85 LKVDL---PEFNKVVSNLPYQI 103 (258)
T ss_pred ccCCc---hhceEEEEcCCccc
Confidence 87642 35899999999863
No 114
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.63 E-value=2.9e-08 Score=92.93 Aligned_cols=87 Identities=29% Similarity=0.371 Sum_probs=74.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---CCCCccEEE
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---STVKCDKVL 409 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---~~~~fD~Vl 409 (456)
..+.|+|..||.||-|++.|.. ...|+++|+++.++..+++|++.+|++++|++++||....... ....+|.|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf 170 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVF 170 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeee
Confidence 4578999999999999999876 4589999999999999999999999999999999998765332 223578999
Q ss_pred EcCCCCCCccccc
Q 012783 410 LDAPCSGLGVLSK 422 (456)
Q Consensus 410 lDaPCSg~G~irr 422 (456)
.-||-+|.|-.+.
T Consensus 171 ~sppwggp~y~~~ 183 (263)
T KOG2730|consen 171 LSPPWGGPSYLRA 183 (263)
T ss_pred cCCCCCCcchhhh
Confidence 9999999997764
No 115
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.63 E-value=1.5e-07 Score=93.09 Aligned_cols=93 Identities=20% Similarity=0.258 Sum_probs=73.1
Q ss_pred cccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccc
Q 012783 316 AVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395 (456)
Q Consensus 316 ~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~ 395 (456)
.++..-...++..+++.++++|||+|||+|..|..++... .+|+|+|+++.+++.+++++.. + ++.++++|+.
T Consensus 25 l~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~---~-~v~~i~~D~~ 97 (272)
T PRK00274 25 LIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE---D-NLTIIEGDAL 97 (272)
T ss_pred CCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc---C-ceEEEEChhh
Confidence 3333444566677788899999999999999999999873 4899999999999999987642 3 4899999998
Q ss_pred cccccCCCCccEEEEcCCCCC
Q 012783 396 TFADNSTVKCDKVLLDAPCSG 416 (456)
Q Consensus 396 ~~~~~~~~~fD~VllDaPCSg 416 (456)
.++... ..+|.|+.++|..-
T Consensus 98 ~~~~~~-~~~~~vv~NlPY~i 117 (272)
T PRK00274 98 KVDLSE-LQPLKVVANLPYNI 117 (272)
T ss_pred cCCHHH-cCcceEEEeCCccc
Confidence 764321 12599999999863
No 116
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.62 E-value=1.8e-07 Score=87.90 Aligned_cols=84 Identities=18% Similarity=0.129 Sum_probs=67.1
Q ss_pred HHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCC
Q 012783 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403 (456)
Q Consensus 324 lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~ 403 (456)
.+...+...++.+|||+|||+|..+..+++. ..+|+|+|+++.+++.++++++..|+. +.+...|....+. ..
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~--~~ 93 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAAL--NE 93 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhccc--cC
Confidence 4445666667789999999999999999975 469999999999999999999888875 6777788754432 35
Q ss_pred CccEEEEcCCC
Q 012783 404 KCDKVLLDAPC 414 (456)
Q Consensus 404 ~fD~VllDaPC 414 (456)
+||.|++-.+.
T Consensus 94 ~fD~I~~~~~~ 104 (195)
T TIGR00477 94 DYDFIFSTVVF 104 (195)
T ss_pred CCCEEEEeccc
Confidence 79999875543
No 117
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.61 E-value=2.3e-07 Score=92.52 Aligned_cols=90 Identities=17% Similarity=0.198 Sum_probs=69.1
Q ss_pred hHHHHHHHhcC--CCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccc
Q 012783 320 ESAGLVVAVVD--PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397 (456)
Q Consensus 320 ~ss~lv~~~l~--~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~ 397 (456)
+.+.++...+. ..+|.+|||+|||+|..+..++.. +..+|+|+|+++.+++.+++|++..++.+.+.+..+|....
T Consensus 144 ~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~ 221 (288)
T TIGR00406 144 PTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP 221 (288)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc
Confidence 34445444443 457899999999999999887764 35699999999999999999999999887677777663322
Q ss_pred cccCCCCccEEEEcCCC
Q 012783 398 ADNSTVKCDKVLLDAPC 414 (456)
Q Consensus 398 ~~~~~~~fD~VllDaPC 414 (456)
..++||+|+++..+
T Consensus 222 ---~~~~fDlVvan~~~ 235 (288)
T TIGR00406 222 ---IEGKADVIVANILA 235 (288)
T ss_pred ---cCCCceEEEEecCH
Confidence 23689999998643
No 118
>PRK04457 spermidine synthase; Provisional
Probab=98.61 E-value=1.6e-07 Score=92.42 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=67.9
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 331 ~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
..++.+|||+|+|.|..+..++... +..+|+++|+++..++.+++++...+...+++++.+|+..+.....++||.|++
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 3456799999999999999999886 468999999999999999998765554456899999998765544568999999
Q ss_pred cC
Q 012783 411 DA 412 (456)
Q Consensus 411 Da 412 (456)
|+
T Consensus 143 D~ 144 (262)
T PRK04457 143 DG 144 (262)
T ss_pred eC
Confidence 96
No 119
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.60 E-value=2.9e-07 Score=87.78 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=62.8
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 331 ~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
+.++.+|||+|||+|..+..++.. ..+|+++|++++++..+++++...+..+.+.+.++|+...+ ++||.|++
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~fD~ii~ 125 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC----GEFDIVVC 125 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC----CCcCEEEE
Confidence 457899999999999999999875 45899999999999999999988877555899999987654 57998876
No 120
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.58 E-value=3.8e-07 Score=87.21 Aligned_cols=87 Identities=16% Similarity=0.289 Sum_probs=71.7
Q ss_pred HHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCC
Q 012783 323 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402 (456)
Q Consensus 323 ~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~ 402 (456)
..++..+.+.++.+|||+|||+|..+..++...+...+|+++|+++.+++.+++++...+..+.+.++.+|+...+. ..
T Consensus 41 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~ 119 (239)
T PRK00216 41 RKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF-PD 119 (239)
T ss_pred HHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC-CC
Confidence 34455666778899999999999999999998644689999999999999999998877666668899999877653 23
Q ss_pred CCccEEEE
Q 012783 403 VKCDKVLL 410 (456)
Q Consensus 403 ~~fD~Vll 410 (456)
+.||+|++
T Consensus 120 ~~~D~I~~ 127 (239)
T PRK00216 120 NSFDAVTI 127 (239)
T ss_pred CCccEEEE
Confidence 68999986
No 121
>PLN02672 methionine S-methyltransferase
Probab=98.58 E-value=2.2e-07 Score=106.08 Aligned_cols=86 Identities=14% Similarity=0.189 Sum_probs=70.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCC---------------ceEEEEeccccccc
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN---------------SVIRTIHADLRTFA 398 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~---------------~~V~~~~~Da~~~~ 398 (456)
+.+|||+|||+|..++.++...+ .++|+|+|+|+.+++.+++|+++++++ ++|+++++|.....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 46899999999999999998864 479999999999999999999987542 35899999987654
Q ss_pred ccCCCCccEEEEcCCCCCCccc
Q 012783 399 DNSTVKCDKVLLDAPCSGLGVL 420 (456)
Q Consensus 399 ~~~~~~fD~VllDaPCSg~G~i 420 (456)
.....+||+|+.+||.-..+-+
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~ 219 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNP 219 (1082)
T ss_pred cccCCceEEEEECCCcCCCcch
Confidence 2222369999999999766643
No 122
>PHA03411 putative methyltransferase; Provisional
Probab=98.58 E-value=2.8e-07 Score=90.37 Aligned_cols=81 Identities=20% Similarity=0.276 Sum_probs=66.0
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEE
Q 012783 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409 (456)
Q Consensus 330 ~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vl 409 (456)
.+.++.+|||+|||+|..+..++...+ ..+|+++|+++.+++.+++++ .+ +.++++|+..+.. ..+||.|+
T Consensus 61 ~~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~-----~~-v~~v~~D~~e~~~--~~kFDlII 131 (279)
T PHA03411 61 DAHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL-----PE-AEWITSDVFEFES--NEKFDVVI 131 (279)
T ss_pred ccccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC-----cC-CEEEECchhhhcc--cCCCcEEE
Confidence 445678999999999999998888643 468999999999999998863 23 6789999987653 35899999
Q ss_pred EcCCCCCCcc
Q 012783 410 LDAPCSGLGV 419 (456)
Q Consensus 410 lDaPCSg~G~ 419 (456)
+|||......
T Consensus 132 sNPPF~~l~~ 141 (279)
T PHA03411 132 SNPPFGKINT 141 (279)
T ss_pred EcCCccccCc
Confidence 9999986554
No 123
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.57 E-value=3.2e-07 Score=94.37 Aligned_cols=87 Identities=15% Similarity=0.271 Sum_probs=73.0
Q ss_pred HHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc-cCCCC
Q 012783 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVK 404 (456)
Q Consensus 326 ~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~-~~~~~ 404 (456)
...+....+..|||+|||+|..++++|... +...++|+|+++.++..+.+++...|+.| |.++++|+..+.. ..++.
T Consensus 115 ~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~~~~s 192 (390)
T PRK14121 115 LDFISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLELLPSNS 192 (390)
T ss_pred HHHhcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhhCCCCc
Confidence 334455667899999999999999999986 56899999999999999999999999988 8999999976432 22468
Q ss_pred ccEEEEcCCC
Q 012783 405 CDKVLLDAPC 414 (456)
Q Consensus 405 fD~VllDaPC 414 (456)
||.|++.-|+
T Consensus 193 ~D~I~lnFPd 202 (390)
T PRK14121 193 VEKIFVHFPV 202 (390)
T ss_pred eeEEEEeCCC
Confidence 9999987655
No 124
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.57 E-value=1.7e-07 Score=94.09 Aligned_cols=94 Identities=15% Similarity=0.183 Sum_probs=77.8
Q ss_pred chHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEec-ccccc
Q 012783 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTF 397 (456)
Q Consensus 319 d~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~-Da~~~ 397 (456)
-.-|...+.+..+++|+.|||=.|||||+...+.- + ...++++|++..|++-++.|++.+|+.+ ..++.. |++.+
T Consensus 183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl-~--G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~l 258 (347)
T COG1041 183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGL-M--GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNL 258 (347)
T ss_pred HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhh-c--CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccC
Confidence 34566778888899999999999999999887764 4 5799999999999999999999999887 445555 99988
Q ss_pred cccCCCCccEEEEcCCCCCC
Q 012783 398 ADNSTVKCDKVLLDAPCSGL 417 (456)
Q Consensus 398 ~~~~~~~fD~VllDaPCSg~ 417 (456)
+- ....||.|.+|||.--+
T Consensus 259 pl-~~~~vdaIatDPPYGrs 277 (347)
T COG1041 259 PL-RDNSVDAIATDPPYGRS 277 (347)
T ss_pred CC-CCCccceEEecCCCCcc
Confidence 73 23469999999999533
No 125
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=2e-07 Score=92.38 Aligned_cols=89 Identities=17% Similarity=0.258 Sum_probs=67.8
Q ss_pred hHHHHHHHhcC--CCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccc
Q 012783 320 ESAGLVVAVVD--PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397 (456)
Q Consensus 320 ~ss~lv~~~l~--~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~ 397 (456)
+...+..++|+ .++|.+|||+|||+|..++.++.+ +...|+|+|+++..++.+++|+++++++..+.....+....
T Consensus 147 pTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~ 224 (300)
T COG2264 147 PTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV 224 (300)
T ss_pred hhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh
Confidence 55666666665 468999999999999999888775 56789999999999999999999999985333333333222
Q ss_pred cccCCCCccEEEEcC
Q 012783 398 ADNSTVKCDKVLLDA 412 (456)
Q Consensus 398 ~~~~~~~fD~VllDa 412 (456)
+ ..++||+|+++-
T Consensus 225 ~--~~~~~DvIVANI 237 (300)
T COG2264 225 P--ENGPFDVIVANI 237 (300)
T ss_pred c--ccCcccEEEehh
Confidence 2 125899999874
No 126
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.55 E-value=2.5e-07 Score=93.51 Aligned_cols=77 Identities=23% Similarity=0.257 Sum_probs=63.8
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEE
Q 012783 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409 (456)
Q Consensus 330 ~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vl 409 (456)
.+.+|.+|||+|||+|..+..++.. .++|+++|+++++++.++++++..+....|.++++|+..++.. .++||+|+
T Consensus 128 ~~~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~-~~~FD~Vi 203 (322)
T PLN02396 128 KPFEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADE-GRKFDAVL 203 (322)
T ss_pred cCCCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhc-cCCCCEEE
Confidence 3557889999999999999988863 4699999999999999999877665544589999999877543 46899998
Q ss_pred E
Q 012783 410 L 410 (456)
Q Consensus 410 l 410 (456)
+
T Consensus 204 ~ 204 (322)
T PLN02396 204 S 204 (322)
T ss_pred E
Confidence 6
No 127
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.54 E-value=3.5e-07 Score=92.16 Aligned_cols=86 Identities=13% Similarity=0.092 Sum_probs=68.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHc-CCCceEEEEe-cccccccc---cCCCCccE
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH-QVNSVIRTIH-ADLRTFAD---NSTVKCDK 407 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~-g~~~~V~~~~-~Da~~~~~---~~~~~fD~ 407 (456)
++.+|||+|||+|+....++.... ..+++|+|+++..++.+++|++.+ ++.++|.+.. .|...+.. ...+.||.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 568999999999999998888754 579999999999999999999999 8988787754 34333221 12358999
Q ss_pred EEEcCCCCCCcc
Q 012783 408 VLLDAPCSGLGV 419 (456)
Q Consensus 408 VllDaPCSg~G~ 419 (456)
|+|+||.-.++.
T Consensus 193 ivcNPPf~~s~~ 204 (321)
T PRK11727 193 TLCNPPFHASAA 204 (321)
T ss_pred EEeCCCCcCcch
Confidence 999999975543
No 128
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.54 E-value=1.8e-07 Score=88.88 Aligned_cols=70 Identities=29% Similarity=0.399 Sum_probs=56.3
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccc-------ccCCC
Q 012783 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-------DNSTV 403 (456)
Q Consensus 331 ~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~-------~~~~~ 403 (456)
.++|.+|||+|||||+.+..+++..++.++|+|+|+++. .+..+ |+++++|+.... ....+
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~-v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVG-VDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCC-cEEEecCCCChHHHHHHHHHhCCC
Confidence 357899999999999999999999877789999999881 13344 789999988742 12246
Q ss_pred CccEEEEcC
Q 012783 404 KCDKVLLDA 412 (456)
Q Consensus 404 ~fD~VllDa 412 (456)
.||.|++|.
T Consensus 117 ~~D~V~S~~ 125 (209)
T PRK11188 117 KVQVVMSDM 125 (209)
T ss_pred CCCEEecCC
Confidence 899999985
No 129
>PRK08317 hypothetical protein; Provisional
Probab=98.54 E-value=5.7e-07 Score=85.70 Aligned_cols=84 Identities=21% Similarity=0.285 Sum_probs=67.6
Q ss_pred HHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCC
Q 012783 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404 (456)
Q Consensus 325 v~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~ 404 (456)
+...+.+.++.+|||+|||+|..+..++..+++.++|+++|+++.++..++++.... ...+.+..+|+..++. ..+.
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~-~~~~ 87 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL--GPNVEFVRGDADGLPF-PDGS 87 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC--CCceEEEecccccCCC-CCCC
Confidence 345667888999999999999999999998766789999999999999999883322 2347889999876543 2368
Q ss_pred ccEEEEc
Q 012783 405 CDKVLLD 411 (456)
Q Consensus 405 fD~VllD 411 (456)
||.|+++
T Consensus 88 ~D~v~~~ 94 (241)
T PRK08317 88 FDAVRSD 94 (241)
T ss_pred ceEEEEe
Confidence 9999875
No 130
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.54 E-value=2.6e-07 Score=92.07 Aligned_cols=86 Identities=23% Similarity=0.300 Sum_probs=64.4
Q ss_pred chHHHHHHHhcC--CCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccc
Q 012783 319 DESAGLVVAVVD--PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396 (456)
Q Consensus 319 d~ss~lv~~~l~--~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~ 396 (456)
-+..+++..++. ..+|.+|||+|||+|-.++..+.+ +..+|+|+|+++..++.+++|++.+|+.+++.+. ....
T Consensus 145 H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~ 220 (295)
T PF06325_consen 145 HPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSED 220 (295)
T ss_dssp CHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSC
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eecc
Confidence 456666666654 567899999999999998877765 4679999999999999999999999999876543 1111
Q ss_pred ccccCCCCccEEEEc
Q 012783 397 FADNSTVKCDKVLLD 411 (456)
Q Consensus 397 ~~~~~~~~fD~VllD 411 (456)
. ..++||+|+.+
T Consensus 221 ~---~~~~~dlvvAN 232 (295)
T PF06325_consen 221 L---VEGKFDLVVAN 232 (295)
T ss_dssp T---CCS-EEEEEEE
T ss_pred c---ccccCCEEEEC
Confidence 1 13789999876
No 131
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.53 E-value=4.9e-07 Score=88.26 Aligned_cols=89 Identities=17% Similarity=0.184 Sum_probs=70.8
Q ss_pred ccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccc
Q 012783 317 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396 (456)
Q Consensus 317 vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~ 396 (456)
.|..-+..+...+.+.++.+|||+|||+|..+..+++.. +.++|+++|+++.+++.++++. .+ +.++.+|+..
T Consensus 15 ~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----~~-~~~~~~d~~~ 87 (258)
T PRK01683 15 ERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----PD-CQFVEADIAS 87 (258)
T ss_pred HhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----CC-CeEEECchhc
Confidence 455555566666777889999999999999999999875 4579999999999999998763 33 6788899876
Q ss_pred ccccCCCCccEEEEcCCC
Q 012783 397 FADNSTVKCDKVLLDAPC 414 (456)
Q Consensus 397 ~~~~~~~~fD~VllDaPC 414 (456)
+.. ..+||.|++....
T Consensus 88 ~~~--~~~fD~v~~~~~l 103 (258)
T PRK01683 88 WQP--PQALDLIFANASL 103 (258)
T ss_pred cCC--CCCccEEEEccCh
Confidence 542 3589999987653
No 132
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.52 E-value=5e-07 Score=87.38 Aligned_cols=77 Identities=14% Similarity=0.185 Sum_probs=64.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 332 QPGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 332 ~~g~~VLDlcAGpGgkt~~la~~~~-~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
.++.+|||+|||+|..+..+++.+. +.++|+++|+++.+++.++++++..+...+++++++|+..++. ..+|.|++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~d~v~~ 128 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI---KNASMVIL 128 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC---CCCCEEee
Confidence 4788999999999999999998753 5689999999999999999999887766568999999987643 35888775
Q ss_pred c
Q 012783 411 D 411 (456)
Q Consensus 411 D 411 (456)
.
T Consensus 129 ~ 129 (239)
T TIGR00740 129 N 129 (239)
T ss_pred e
Confidence 3
No 133
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.51 E-value=5.3e-07 Score=88.76 Aligned_cols=95 Identities=13% Similarity=0.116 Sum_probs=72.7
Q ss_pred cccccccccch-HHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEE
Q 012783 310 LKEGLCAVQDE-SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 388 (456)
Q Consensus 310 ~~~G~~~vQd~-ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~ 388 (456)
|-.|++..... .+..++..+.+.++.+|||+|||+|+.+..++... .++|+++|+++.++..+++++.. .+++.
T Consensus 28 ~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~ 102 (263)
T PTZ00098 28 FGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIE 102 (263)
T ss_pred hCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceE
Confidence 44455555432 34455666788999999999999999999998753 46999999999999999987654 23588
Q ss_pred EEecccccccccCCCCccEEEE
Q 012783 389 TIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 389 ~~~~Da~~~~~~~~~~fD~Vll 410 (456)
+.++|+...+. ..++||+|++
T Consensus 103 ~~~~D~~~~~~-~~~~FD~V~s 123 (263)
T PTZ00098 103 FEANDILKKDF-PENTFDMIYS 123 (263)
T ss_pred EEECCcccCCC-CCCCeEEEEE
Confidence 99999876432 2368999998
No 134
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.50 E-value=3.1e-07 Score=89.39 Aligned_cols=87 Identities=17% Similarity=0.215 Sum_probs=69.8
Q ss_pred cccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccc
Q 012783 316 AVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395 (456)
Q Consensus 316 ~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~ 395 (456)
.+|...+..+...+...++.+|||+|||+|..+..++.. ..+|+++|+++.+++.++++.. . +.++++|+.
T Consensus 25 ~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~-----~-~~~~~~d~~ 95 (251)
T PRK10258 25 ELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA-----A-DHYLAGDIE 95 (251)
T ss_pred HHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----C-CCEEEcCcc
Confidence 478888888888887777899999999999999888764 4789999999999999887642 1 356788987
Q ss_pred cccccCCCCccEEEEcC
Q 012783 396 TFADNSTVKCDKVLLDA 412 (456)
Q Consensus 396 ~~~~~~~~~fD~VllDa 412 (456)
.++. ..++||.|++..
T Consensus 96 ~~~~-~~~~fD~V~s~~ 111 (251)
T PRK10258 96 SLPL-ATATFDLAWSNL 111 (251)
T ss_pred cCcC-CCCcEEEEEECc
Confidence 7653 236899999754
No 135
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.49 E-value=4.9e-07 Score=88.31 Aligned_cols=80 Identities=21% Similarity=0.276 Sum_probs=64.6
Q ss_pred HHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCC
Q 012783 323 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402 (456)
Q Consensus 323 ~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~ 402 (456)
.-+...+.+.++.+|||+|||+|..+..++... +.++|+++|+++.+++.++++ + +.++++|+..+.. .
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~----~----~~~~~~d~~~~~~--~ 87 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER----G----VDARTGDVRDWKP--K 87 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc----C----CcEEEcChhhCCC--C
Confidence 344566777889999999999999999999886 457999999999999988653 2 5688899877642 3
Q ss_pred CCccEEEEcCC
Q 012783 403 VKCDKVLLDAP 413 (456)
Q Consensus 403 ~~fD~VllDaP 413 (456)
++||.|++...
T Consensus 88 ~~fD~v~~~~~ 98 (255)
T PRK14103 88 PDTDVVVSNAA 98 (255)
T ss_pred CCceEEEEehh
Confidence 68999999664
No 136
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.46 E-value=8.3e-07 Score=86.64 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=56.3
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 331 ~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
+.++.+|||+|||+|..+..++.. + ..+|+|+|+|+.+++.+++|++..++...+.+..+| .+||.|++
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~---------~~fD~Vva 185 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD---------LKADVIVA 185 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC---------CCcCEEEE
Confidence 457899999999999988876653 3 457999999999999999999999885444443332 27999998
Q ss_pred cC
Q 012783 411 DA 412 (456)
Q Consensus 411 Da 412 (456)
+.
T Consensus 186 ni 187 (250)
T PRK00517 186 NI 187 (250)
T ss_pred cC
Confidence 64
No 137
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.45 E-value=8.4e-07 Score=88.37 Aligned_cols=80 Identities=26% Similarity=0.247 Sum_probs=64.3
Q ss_pred HhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCcc
Q 012783 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406 (456)
Q Consensus 327 ~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD 406 (456)
..+...++.+|||+|||+|..+..++.. ..+|+|+|+|+.+++.++++++..++ + +.+...|+..... .++||
T Consensus 114 ~~~~~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~-v~~~~~D~~~~~~--~~~fD 186 (287)
T PRK12335 114 EAVQTVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-N-IRTGLYDINSASI--QEEYD 186 (287)
T ss_pred HHhhccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEechhcccc--cCCcc
Confidence 3333344569999999999999999885 47999999999999999999999888 3 7888888765432 46899
Q ss_pred EEEEcCC
Q 012783 407 KVLLDAP 413 (456)
Q Consensus 407 ~VllDaP 413 (456)
.|++-..
T Consensus 187 ~I~~~~v 193 (287)
T PRK12335 187 FILSTVV 193 (287)
T ss_pred EEEEcch
Confidence 9987543
No 138
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.43 E-value=9.9e-07 Score=71.20 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=63.6
Q ss_pred eEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEcCCCC
Q 012783 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCS 415 (456)
Q Consensus 336 ~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllDaPCS 415 (456)
+|+|+|||+|..+..++. .+..+++++|+++..+..+++.....+.. .+.++..|..........+||.|+++.||.
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLAD-NVEVLKGDAEELPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhccccc-ceEEEEcChhhhccccCCceEEEEEcccee
Confidence 589999999999998887 35689999999999999988655444444 488999998876542346899999999998
Q ss_pred CC
Q 012783 416 GL 417 (456)
Q Consensus 416 g~ 417 (456)
..
T Consensus 78 ~~ 79 (107)
T cd02440 78 HL 79 (107)
T ss_pred eh
Confidence 64
No 139
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.42 E-value=1.2e-06 Score=83.12 Aligned_cols=100 Identities=22% Similarity=0.197 Sum_probs=86.0
Q ss_pred cccccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecc
Q 012783 314 LCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 393 (456)
Q Consensus 314 ~~~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~D 393 (456)
.+.+-++..+++..++....+.++||+|.-+|..++.+|..++..|+|+++|+++...+...+-.+..|+...|++++++
T Consensus 54 ~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~ 133 (237)
T KOG1663|consen 54 EMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGP 133 (237)
T ss_pred ceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecc
Confidence 34455666777777777777899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc-----cccCCCCccEEEEcCC
Q 012783 394 LRTF-----ADNSTVKCDKVLLDAP 413 (456)
Q Consensus 394 a~~~-----~~~~~~~fD~VllDaP 413 (456)
+.+- ++...+.||.+|+|+-
T Consensus 134 a~esLd~l~~~~~~~tfDfaFvDad 158 (237)
T KOG1663|consen 134 ALESLDELLADGESGTFDFAFVDAD 158 (237)
T ss_pred hhhhHHHHHhcCCCCceeEEEEccc
Confidence 8653 2233578999999973
No 140
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.42 E-value=9.8e-07 Score=88.65 Aligned_cols=107 Identities=20% Similarity=0.288 Sum_probs=75.2
Q ss_pred ccccccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHc------CCCceEEEEeCCHHHHHHHHHHHHHcCCCce
Q 012783 313 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL------SGQGLVYAIDINKGRLRILNETAKLHQVNSV 386 (456)
Q Consensus 313 G~~~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~------~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~ 386 (456)
|.|+--..-+.+++.++.+.++++|+|-|||+|++.+.+...+ .....++|+|+++..+..++-|+.-.|....
T Consensus 26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~ 105 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS 105 (311)
T ss_dssp GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB
T ss_pred ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc
Confidence 5555555666788999999999999999999999988888754 2467999999999999999999877776542
Q ss_pred -EEEEecccccccccC-CCCccEEEEcCCCCCCcc
Q 012783 387 -IRTIHADLRTFADNS-TVKCDKVLLDAPCSGLGV 419 (456)
Q Consensus 387 -V~~~~~Da~~~~~~~-~~~fD~VllDaPCSg~G~ 419 (456)
..+..+|....+... ...||.|+.+||-+..+.
T Consensus 106 ~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~ 140 (311)
T PF02384_consen 106 NINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEW 140 (311)
T ss_dssp GCEEEES-TTTSHSCTST--EEEEEEE--CTCES-
T ss_pred cccccccccccccccccccccccccCCCCcccccc
Confidence 357788876544332 468999999999987744
No 141
>PRK06202 hypothetical protein; Provisional
Probab=98.41 E-value=8.5e-07 Score=85.38 Aligned_cols=79 Identities=14% Similarity=0.077 Sum_probs=57.9
Q ss_pred hcCCCCCCeEEEEcCCCchHHHHHHHHcC---CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCC
Q 012783 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLS---GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404 (456)
Q Consensus 328 ~l~~~~g~~VLDlcAGpGgkt~~la~~~~---~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~ 404 (456)
.+...++.+|||+|||+|..+..++.... ...+|+++|+++++++.++++....++ .+...|+..++. .+++
T Consensus 55 ~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~~~~l~~-~~~~ 129 (232)
T PRK06202 55 ALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV----TFRQAVSDELVA-EGER 129 (232)
T ss_pred hcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC----eEEEEecccccc-cCCC
Confidence 34445678999999999999999887643 235999999999999999887654443 344444444433 3468
Q ss_pred ccEEEEc
Q 012783 405 CDKVLLD 411 (456)
Q Consensus 405 fD~VllD 411 (456)
||.|++.
T Consensus 130 fD~V~~~ 136 (232)
T PRK06202 130 FDVVTSN 136 (232)
T ss_pred ccEEEEC
Confidence 9999983
No 142
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.41 E-value=4.2e-07 Score=86.83 Aligned_cols=73 Identities=22% Similarity=0.193 Sum_probs=63.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 332 ~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
-+|.+|||+|||-|..+..||+. +..|+|+|++++.++.++..+.+.|+. |.+.+..+.++.... ++||+|+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~-~~FDvV~c 130 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAG-GQFDVVTC 130 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcC-CCccEEEE
Confidence 47999999999999999999986 489999999999999999999999886 567777776665433 79999998
No 143
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.41 E-value=1.4e-06 Score=83.15 Aligned_cols=73 Identities=22% Similarity=0.155 Sum_probs=61.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEc
Q 012783 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (456)
Q Consensus 332 ~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllD 411 (456)
.++.+|||+|||+|..+..++.. ...|+++|+++.+++.+++++...+..+++.+..+|... ..+.||.|++.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~fD~v~~~ 134 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES----LLGRFDTVVCL 134 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh----ccCCcCEEEEc
Confidence 56789999999999999999875 357999999999999999999888885568899999432 23679999874
No 144
>PRK00811 spermidine synthase; Provisional
Probab=98.40 E-value=1.1e-06 Score=87.34 Aligned_cols=80 Identities=9% Similarity=0.133 Sum_probs=66.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcC--C--CceEEEEecccccccccCCCCccEE
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ--V--NSVIRTIHADLRTFADNSTVKCDKV 408 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g--~--~~~V~~~~~Da~~~~~~~~~~fD~V 408 (456)
.+.+|||+|||.|+.+..+++. .+..+|+++|+++..++.+++++...+ . +.+++++.+|+..+.....++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4679999999999999999875 345689999999999999999987653 2 3468999999988765445789999
Q ss_pred EEcCC
Q 012783 409 LLDAP 413 (456)
Q Consensus 409 llDaP 413 (456)
++|.+
T Consensus 155 i~D~~ 159 (283)
T PRK00811 155 IVDST 159 (283)
T ss_pred EECCC
Confidence 99963
No 145
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.40 E-value=1.3e-06 Score=82.68 Aligned_cols=71 Identities=20% Similarity=0.127 Sum_probs=57.3
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 331 ~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
..++.+|||+|||+|..+..++...+ .+.|+|+|+|+.+++.++++.. + +.++++|+.. + ...++||.|++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~~-----~-~~~~~~d~~~-~-~~~~sfD~V~~ 111 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYLP-----N-INIIQGSLFD-P-FKDNFFDLVLT 111 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhCC-----C-CcEEEeeccC-C-CCCCCEEEEEE
Confidence 45678999999999999999988753 5799999999999999987642 2 5677888876 2 23468999996
No 146
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.39 E-value=2.1e-06 Score=80.34 Aligned_cols=87 Identities=26% Similarity=0.250 Sum_probs=64.3
Q ss_pred cccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccc
Q 012783 316 AVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395 (456)
Q Consensus 316 ~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~ 395 (456)
.....-|. +...++.-++.++||+|||.|..++.+|++ +-.|+|+|+|+..++.+++.+++.+++ |++...|..
T Consensus 14 ~~~~~hs~-v~~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~ 87 (192)
T PF03848_consen 14 GLTPTHSE-VLEAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLN 87 (192)
T ss_dssp TB----HH-HHHHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGC
T ss_pred CCCCCcHH-HHHHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecch
Confidence 34444444 445566667889999999999999999996 568999999999999999999999997 888999987
Q ss_pred cccccCCCCccEEEE
Q 012783 396 TFADNSTVKCDKVLL 410 (456)
Q Consensus 396 ~~~~~~~~~fD~Vll 410 (456)
.+.. ++.||.|+.
T Consensus 88 ~~~~--~~~yD~I~s 100 (192)
T PF03848_consen 88 DFDF--PEEYDFIVS 100 (192)
T ss_dssp CBS---TTTEEEEEE
T ss_pred hccc--cCCcCEEEE
Confidence 6543 367999875
No 147
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.38 E-value=1.7e-06 Score=92.00 Aligned_cols=84 Identities=23% Similarity=0.247 Sum_probs=67.6
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccC
Q 012783 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401 (456)
Q Consensus 322 s~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~ 401 (456)
...++..+.+.++.+|||+|||+|..+..++... ..+|+++|+|+.++..++++.. +...++.++++|+...+. .
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~-~ 329 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTY-P 329 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCC-C
Confidence 3445666677889999999999999999999875 4689999999999999998876 333458899999876542 2
Q ss_pred CCCccEEEE
Q 012783 402 TVKCDKVLL 410 (456)
Q Consensus 402 ~~~fD~Vll 410 (456)
.++||.|++
T Consensus 330 ~~~fD~I~s 338 (475)
T PLN02336 330 DNSFDVIYS 338 (475)
T ss_pred CCCEEEEEE
Confidence 368999987
No 148
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=4e-07 Score=80.16 Aligned_cols=86 Identities=19% Similarity=0.260 Sum_probs=71.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEc
Q 012783 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (456)
Q Consensus 332 ~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllD 411 (456)
-+|..++|+|||.|..++. -.|.+...|+++|++++.++....|++.+.+. +.++++|...+.... +.||.++.|
T Consensus 47 iEgkkl~DLgcgcGmLs~a--~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~~-g~fDtaviN 121 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIA--FSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELKG-GIFDTAVIN 121 (185)
T ss_pred ccCcchhhhcCchhhhHHH--hhcCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhccC-CeEeeEEec
Confidence 4689999999999998843 34556679999999999999999999999886 578999987664433 789999999
Q ss_pred CCCCCCcccccCCC
Q 012783 412 APCSGLGVLSKTCV 425 (456)
Q Consensus 412 aPCSg~G~irr~p~ 425 (456)
||- ||=.|+.|
T Consensus 122 ppF---GTk~~~aD 132 (185)
T KOG3420|consen 122 PPF---GTKKKGAD 132 (185)
T ss_pred CCC---Cccccccc
Confidence 995 77667766
No 149
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.37 E-value=2.2e-06 Score=86.80 Aligned_cols=83 Identities=19% Similarity=0.228 Sum_probs=63.7
Q ss_pred HHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCC
Q 012783 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403 (456)
Q Consensus 324 lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~ 403 (456)
.+...+.+.+|.+|||+|||+|..+..++.. +...|+++|+++.++...+...+..+....|.++.+|+..++. .+
T Consensus 113 ~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~--g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~--~~ 188 (322)
T PRK15068 113 RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGA--GAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA--LK 188 (322)
T ss_pred HHHHhhCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC--cC
Confidence 3445666677899999999999999999886 3457999999999887655444444433348899999987764 46
Q ss_pred CccEEEE
Q 012783 404 KCDKVLL 410 (456)
Q Consensus 404 ~fD~Vll 410 (456)
.||.|++
T Consensus 189 ~FD~V~s 195 (322)
T PRK15068 189 AFDTVFS 195 (322)
T ss_pred CcCEEEE
Confidence 8999996
No 150
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.37 E-value=1.7e-06 Score=89.72 Aligned_cols=83 Identities=18% Similarity=0.298 Sum_probs=67.2
Q ss_pred cchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccc
Q 012783 318 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397 (456)
Q Consensus 318 Qd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~ 397 (456)
|......++..+.+++|++|||+|||+|+.+.++++.. ..+|+++|+|+++++.++++++ ++. +++...|...+
T Consensus 152 q~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l~--v~~~~~D~~~l 225 (383)
T PRK11705 152 QEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GLP--VEIRLQDYRDL 225 (383)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cCe--EEEEECchhhc
Confidence 44444566777888999999999999999999999875 4689999999999999999885 332 67788887654
Q ss_pred cccCCCCccEEEE
Q 012783 398 ADNSTVKCDKVLL 410 (456)
Q Consensus 398 ~~~~~~~fD~Vll 410 (456)
.++||.|++
T Consensus 226 ----~~~fD~Ivs 234 (383)
T PRK11705 226 ----NGQFDRIVS 234 (383)
T ss_pred ----CCCCCEEEE
Confidence 357999975
No 151
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=5.5e-07 Score=93.88 Aligned_cols=91 Identities=15% Similarity=0.248 Sum_probs=75.0
Q ss_pred HHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccC-CC
Q 012783 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TV 403 (456)
Q Consensus 325 v~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~-~~ 403 (456)
+-+.+....+..++|+|||+|.+++.+|+. .++|+++|+++..+..|+.|++.+|++| .+++++.+..+.... ..
T Consensus 375 i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~~~~sl~~~ 450 (534)
T KOG2187|consen 375 IGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAEDLFPSLLTP 450 (534)
T ss_pred HHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCccc-eeeeecchhhccchhccc
Confidence 445677888899999999999999999875 5789999999999999999999999998 899999665543221 12
Q ss_pred ---Ccc-EEEEcCCCCCCcc
Q 012783 404 ---KCD-KVLLDAPCSGLGV 419 (456)
Q Consensus 404 ---~fD-~VllDaPCSg~G~ 419 (456)
.-+ .+++|||..|.-.
T Consensus 451 ~~~~~~~v~iiDPpR~Glh~ 470 (534)
T KOG2187|consen 451 CCDSETLVAIIDPPRKGLHM 470 (534)
T ss_pred CCCCCceEEEECCCcccccH
Confidence 335 8999999988763
No 152
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.36 E-value=1.7e-06 Score=87.31 Aligned_cols=71 Identities=21% Similarity=0.210 Sum_probs=57.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCC----ceEEEEecccccccccCCCCccEE
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN----SVIRTIHADLRTFADNSTVKCDKV 408 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~----~~V~~~~~Da~~~~~~~~~~fD~V 408 (456)
+|.+|||+|||+|..+..++.. ...|+++|+|+.+++.++++++..+.. ..+.+..+|+..+ .++||.|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~V 216 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTV 216 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEE
Confidence 5789999999999999999975 468999999999999999998876321 2367888887543 3689988
Q ss_pred EE
Q 012783 409 LL 410 (456)
Q Consensus 409 ll 410 (456)
++
T Consensus 217 v~ 218 (315)
T PLN02585 217 TC 218 (315)
T ss_pred EE
Confidence 75
No 153
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.35 E-value=2.2e-06 Score=83.83 Aligned_cols=90 Identities=18% Similarity=0.198 Sum_probs=71.2
Q ss_pred ccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccc
Q 012783 317 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396 (456)
Q Consensus 317 vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~ 396 (456)
+-..-...++..++..++++|||+|||+|..|..+++.. ..|+++|+++.+++.+++++.. .. .++++++|+..
T Consensus 13 ~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~--~~-~v~v~~~D~~~ 86 (253)
T TIGR00755 13 IDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL--YE-RLEVIEGDALK 86 (253)
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc--CC-cEEEEECchhc
Confidence 333444566677788889999999999999999999874 4699999999999999987743 23 48899999987
Q ss_pred ccccCCCCcc---EEEEcCCCC
Q 012783 397 FADNSTVKCD---KVLLDAPCS 415 (456)
Q Consensus 397 ~~~~~~~~fD---~VllDaPCS 415 (456)
++.. .|| .|+.+.|..
T Consensus 87 ~~~~---~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 87 VDLP---DFPKQLKVVSNLPYN 105 (253)
T ss_pred CChh---HcCCcceEEEcCChh
Confidence 6532 466 999999864
No 154
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.35 E-value=9e-07 Score=71.64 Aligned_cols=66 Identities=20% Similarity=0.157 Sum_probs=53.3
Q ss_pred EEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 338 LDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
||+|||+|..+..+++. +...|+++|+++.+++.++++....+ +.+.++|+..++.. +++||.|++
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~~~-~~sfD~v~~ 66 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLPFP-DNSFDVVFS 66 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSSS--TT-EEEEEE
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCccc-ccccccccc
Confidence 89999999999999987 56899999999999999998876543 45889999888544 579999988
No 155
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.34 E-value=1.6e-06 Score=86.58 Aligned_cols=92 Identities=22% Similarity=0.309 Sum_probs=77.0
Q ss_pred HHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccC--
Q 012783 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-- 401 (456)
Q Consensus 324 lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~-- 401 (456)
-++.+|.+++|+.++|+-+|-||.|..|++.+++ |+|+|+|.++..+..++++++.++ +++.+++++..++....
T Consensus 11 Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~--~R~~~i~~nF~~l~~~l~~ 87 (305)
T TIGR00006 11 EVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE--GRVVLIHDNFANFFEHLDE 87 (305)
T ss_pred HHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC--CcEEEEeCCHHHHHHHHHh
Confidence 3466778899999999999999999999998865 999999999999999999987653 46899999987764321
Q ss_pred --CCCccEEEEcCCCCCCc
Q 012783 402 --TVKCDKVLLDAPCSGLG 418 (456)
Q Consensus 402 --~~~fD~VllDaPCSg~G 418 (456)
..++|.|++|--||+.-
T Consensus 88 ~~~~~vDgIl~DLGvSS~Q 106 (305)
T TIGR00006 88 LLVTKIDGILVDLGVSSPQ 106 (305)
T ss_pred cCCCcccEEEEeccCCHhh
Confidence 24699999999888654
No 156
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.33 E-value=3e-06 Score=86.36 Aligned_cols=91 Identities=15% Similarity=0.256 Sum_probs=77.3
Q ss_pred HHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCC-------------------------------Cc-------eEEEEe
Q 012783 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG-------------------------------QG-------LVYAID 365 (456)
Q Consensus 324 lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~-------------------------------~g-------~V~AvD 365 (456)
.++.+.+-+++..++|--||+|++.+..|.+..+ .+ .++++|
T Consensus 182 Ail~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~D 261 (381)
T COG0116 182 AILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSD 261 (381)
T ss_pred HHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEec
Confidence 3445567778899999999999999988876432 11 378999
Q ss_pred CCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEcCCCC
Q 012783 366 INKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCS 415 (456)
Q Consensus 366 is~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllDaPCS 415 (456)
+++.+++.++.|+++.|+.+.|++.++|+..+.... +.+|+|++|||.-
T Consensus 262 id~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~-~~~gvvI~NPPYG 310 (381)
T COG0116 262 IDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL-EEYGVVISNPPYG 310 (381)
T ss_pred CCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC-CcCCEEEeCCCcc
Confidence 999999999999999999999999999999887654 6899999999994
No 157
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.30 E-value=2.9e-06 Score=80.92 Aligned_cols=73 Identities=14% Similarity=0.057 Sum_probs=62.9
Q ss_pred CeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 335 ~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
++|||+|||+|+.+..+++.. +..+|+++|+|+..+..++++++..|+.+++.++.+|....+. .++||+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~--~~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF--PDTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC--CCCCCEeeh
Confidence 379999999999999999876 3578999999999999999999999998889999999865432 357999985
No 158
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.30 E-value=4.7e-06 Score=83.64 Aligned_cols=85 Identities=18% Similarity=0.214 Sum_probs=70.7
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc
Q 012783 321 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400 (456)
Q Consensus 321 ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~ 400 (456)
....++..++..++.+|||+|||+|..+..+++.. +..+++++|. +..++.++++++..|+.++|+++.+|+...+.
T Consensus 137 ~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~- 213 (306)
T TIGR02716 137 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY- 213 (306)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC-
Confidence 34556667778889999999999999999999986 4689999998 78999999999999998889999999875321
Q ss_pred CCCCccEEEE
Q 012783 401 STVKCDKVLL 410 (456)
Q Consensus 401 ~~~~fD~Vll 410 (456)
..+|.|++
T Consensus 214 --~~~D~v~~ 221 (306)
T TIGR02716 214 --PEADAVLF 221 (306)
T ss_pred --CCCCEEEe
Confidence 24688765
No 159
>PRK06922 hypothetical protein; Provisional
Probab=98.29 E-value=3.4e-06 Score=91.46 Aligned_cols=83 Identities=18% Similarity=0.234 Sum_probs=66.9
Q ss_pred HhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc-cCCCCc
Q 012783 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKC 405 (456)
Q Consensus 327 ~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~-~~~~~f 405 (456)
..++..++.+|||+|||+|..+..+++.. +.+.|+|+|+++.+++.+++++...+. .+.++++|+..++. ..+++|
T Consensus 412 ~i~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fedeSF 488 (677)
T PRK06922 412 IILDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKESV 488 (677)
T ss_pred HHhhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCCCCE
Confidence 34555678999999999999998898875 468999999999999999998876654 37788999877653 234689
Q ss_pred cEEEEcC
Q 012783 406 DKVLLDA 412 (456)
Q Consensus 406 D~VllDa 412 (456)
|.|++..
T Consensus 489 DvVVsn~ 495 (677)
T PRK06922 489 DTIVYSS 495 (677)
T ss_pred EEEEEch
Confidence 9999753
No 160
>PRK05785 hypothetical protein; Provisional
Probab=98.27 E-value=2.2e-06 Score=82.52 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=54.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
++.+|||+|||+|..+..+++.. .++|+++|+|+++++.+++.. ..+++|+..++. .+++||.|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~lp~-~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---------DKVVGSFEALPF-RDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---------ceEEechhhCCC-CCCCEEEEEe
Confidence 47899999999999999998875 479999999999999987631 246788887754 3478999998
No 161
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.26 E-value=5.3e-06 Score=78.40 Aligned_cols=83 Identities=19% Similarity=0.294 Sum_probs=66.0
Q ss_pred HHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCC
Q 012783 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403 (456)
Q Consensus 324 lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~ 403 (456)
.+...+...++.+|||+|||+|..+..++...+..++++++|+++..+..++++.. ...++.++.+|+.+.+. ..+
T Consensus 30 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~-~~~ 105 (223)
T TIGR01934 30 RAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPF-EDN 105 (223)
T ss_pred HHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCC-CCC
Confidence 34445556688999999999999999999887544799999999999999998876 23347889999887653 236
Q ss_pred CccEEEE
Q 012783 404 KCDKVLL 410 (456)
Q Consensus 404 ~fD~Vll 410 (456)
+||+|++
T Consensus 106 ~~D~i~~ 112 (223)
T TIGR01934 106 SFDAVTI 112 (223)
T ss_pred cEEEEEE
Confidence 8999976
No 162
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.22 E-value=6.3e-06 Score=79.17 Aligned_cols=85 Identities=15% Similarity=0.084 Sum_probs=67.9
Q ss_pred HHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCC
Q 012783 323 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402 (456)
Q Consensus 323 ~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~ 402 (456)
.++...+.+.++.+|||+|||+|..+..+++. ...|+++|+++..++.+++++...+.. +.++..|+..++....
T Consensus 38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 112 (233)
T PRK05134 38 NYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGLK--IDYRQTTAEELAAEHP 112 (233)
T ss_pred HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCCc--eEEEecCHHHhhhhcC
Confidence 35555555678899999999999999988875 357999999999999999998887763 6778888876653334
Q ss_pred CCccEEEEcC
Q 012783 403 VKCDKVLLDA 412 (456)
Q Consensus 403 ~~fD~VllDa 412 (456)
++||+|++.-
T Consensus 113 ~~fD~Ii~~~ 122 (233)
T PRK05134 113 GQFDVVTCME 122 (233)
T ss_pred CCccEEEEhh
Confidence 6899998853
No 163
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.21 E-value=6.9e-06 Score=91.53 Aligned_cols=89 Identities=16% Similarity=0.142 Sum_probs=72.4
Q ss_pred HhcCC-CCCCeEEEEcCCCchHHHHHHHHcC-----------------------------------------CCceEEEE
Q 012783 327 AVVDP-QPGQSIVDCCAAPGGKTLYMASCLS-----------------------------------------GQGLVYAI 364 (456)
Q Consensus 327 ~~l~~-~~g~~VLDlcAGpGgkt~~la~~~~-----------------------------------------~~g~V~Av 364 (456)
..... +++..++|-+||+|++.+..|.... ...+|+|+
T Consensus 183 ~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~ 262 (702)
T PRK11783 183 LRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGS 262 (702)
T ss_pred HHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEE
Confidence 33343 5689999999999999988776411 12369999
Q ss_pred eCCHHHHHHHHHHHHHcCCCceEEEEecccccccccC-CCCccEEEEcCCCC
Q 012783 365 DINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLLDAPCS 415 (456)
Q Consensus 365 Dis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~-~~~fD~VllDaPCS 415 (456)
|+++.+++.+++|++..|+.+.|.+.++|+..+.... .+.||.|++|||.-
T Consensus 263 Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg 314 (702)
T PRK11783 263 DIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYG 314 (702)
T ss_pred ECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCc
Confidence 9999999999999999999888999999998875432 24799999999984
No 164
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.20 E-value=4.5e-06 Score=76.40 Aligned_cols=74 Identities=18% Similarity=0.152 Sum_probs=63.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEE
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vl 409 (456)
.++|||+|||.|..-..+++.- =++.++++|.|++.++.++..+++.|++|.|++.+.|.... ....++||+|+
T Consensus 68 A~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvl 141 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVL 141 (227)
T ss_pred ccceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEe
Confidence 3499999999999998888863 35679999999999999999999999999999999999774 34457888876
No 165
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.20 E-value=2.8e-06 Score=79.71 Aligned_cols=84 Identities=21% Similarity=0.266 Sum_probs=66.0
Q ss_pred chHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccc
Q 012783 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (456)
Q Consensus 319 d~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~ 398 (456)
.++.-+++. +.+.+..+|.|+|||||..|-.++++. +...|+++|-|++|++.+++. +.+ +++..+|+..+.
T Consensus 17 RPa~dLla~-Vp~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~r-----lp~-~~f~~aDl~~w~ 88 (257)
T COG4106 17 RPARDLLAR-VPLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQR-----LPD-ATFEEADLRTWK 88 (257)
T ss_pred CcHHHHHhh-CCccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHh-----CCC-CceecccHhhcC
Confidence 334444443 345667899999999999999999997 478999999999999988654 344 689999999885
Q ss_pred ccCCCCccEEEEcC
Q 012783 399 DNSTVKCDKVLLDA 412 (456)
Q Consensus 399 ~~~~~~fD~VllDa 412 (456)
.. ..+|+|+.++
T Consensus 89 p~--~~~dllfaNA 100 (257)
T COG4106 89 PE--QPTDLLFANA 100 (257)
T ss_pred CC--Cccchhhhhh
Confidence 43 5789988875
No 166
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.19 E-value=9.4e-06 Score=81.82 Aligned_cols=82 Identities=18% Similarity=0.171 Sum_probs=60.7
Q ss_pred HHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCC
Q 012783 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404 (456)
Q Consensus 325 v~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~ 404 (456)
+...+.+.+|.+|||+|||+|..+..++.. +...|+++|+|+.++..++...+..+....+.+...|+..++.. ..
T Consensus 113 ~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~--g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~--~~ 188 (314)
T TIGR00452 113 VLPHLSPLKGRTILDVGCGSGYHMWRMLGH--GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL--YA 188 (314)
T ss_pred HHHhcCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC--CC
Confidence 344456778999999999999999888865 34589999999999876544333333334577788888776542 47
Q ss_pred ccEEEE
Q 012783 405 CDKVLL 410 (456)
Q Consensus 405 fD~Vll 410 (456)
||.|++
T Consensus 189 FD~V~s 194 (314)
T TIGR00452 189 FDTVFS 194 (314)
T ss_pred cCEEEE
Confidence 999987
No 167
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=1e-05 Score=78.88 Aligned_cols=91 Identities=20% Similarity=0.230 Sum_probs=74.6
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccC
Q 012783 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401 (456)
Q Consensus 322 s~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~ 401 (456)
...++..+++.+++.||++|+|.|..|..+++. ..+|+|+|+++..+..+++... ... +++++++|+..+....
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~--~~~-n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFA--PYD-NLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhcc--ccc-ceEEEeCchhcCcchh
Confidence 456788889999999999999999999999997 4679999999999999998765 233 4899999998764321
Q ss_pred CCCccEEEEcCCCCCCc
Q 012783 402 TVKCDKVLLDAPCSGLG 418 (456)
Q Consensus 402 ~~~fD~VllDaPCSg~G 418 (456)
...++.|+-+-|..=+.
T Consensus 93 l~~~~~vVaNlPY~Iss 109 (259)
T COG0030 93 LAQPYKVVANLPYNISS 109 (259)
T ss_pred hcCCCEEEEcCCCcccH
Confidence 11689999999998443
No 168
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.18 E-value=5.1e-06 Score=79.28 Aligned_cols=92 Identities=18% Similarity=0.171 Sum_probs=69.6
Q ss_pred cccchHHHHHHHhcCC---CCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEec
Q 012783 316 AVQDESAGLVVAVVDP---QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 392 (456)
Q Consensus 316 ~vQd~ss~lv~~~l~~---~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~ 392 (456)
.+|...+..+...+.. ..+.+|||+|||+|..+..++... +..+++++|+++.++..+++++. + ++.++.+
T Consensus 14 ~~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~----~-~~~~~~~ 87 (240)
T TIGR02072 14 KIQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS----E-NVQFICG 87 (240)
T ss_pred HHHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC----C-CCeEEec
Confidence 4566555555555542 345789999999999999999885 45789999999999998887654 2 3678899
Q ss_pred ccccccccCCCCccEEEEcCCC
Q 012783 393 DLRTFADNSTVKCDKVLLDAPC 414 (456)
Q Consensus 393 Da~~~~~~~~~~fD~VllDaPC 414 (456)
|+...+. ..++||+|+++-.+
T Consensus 88 d~~~~~~-~~~~fD~vi~~~~l 108 (240)
T TIGR02072 88 DAEKLPL-EDSSFDLIVSNLAL 108 (240)
T ss_pred chhhCCC-CCCceeEEEEhhhh
Confidence 9887653 23689999987544
No 169
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.18 E-value=7.8e-06 Score=80.75 Aligned_cols=91 Identities=16% Similarity=0.211 Sum_probs=65.0
Q ss_pred ccccc-ccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCC--ceEEEEeCCHHHHHHHHHHHHHcCCCceEE
Q 012783 312 EGLCA-VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIR 388 (456)
Q Consensus 312 ~G~~~-vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~--g~V~AvDis~~rl~~l~~n~~r~g~~~~V~ 388 (456)
.|.|. +++.-+..+...+. ..+.+|||+|||+|..+..++..++.. ..|+++|+|+.+++.++++. ++ +.
T Consensus 64 ~g~y~~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~-~~ 136 (272)
T PRK11088 64 AGHYQPLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQ-VT 136 (272)
T ss_pred CCChHHHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CC-Ce
Confidence 45443 34443334444332 456789999999999999999876532 37999999999999987642 33 67
Q ss_pred EEecccccccccCCCCccEEEE
Q 012783 389 TIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 389 ~~~~Da~~~~~~~~~~fD~Vll 410 (456)
++.+|+..++.. .++||.|+.
T Consensus 137 ~~~~d~~~lp~~-~~sfD~I~~ 157 (272)
T PRK11088 137 FCVASSHRLPFA-DQSLDAIIR 157 (272)
T ss_pred EEEeecccCCCc-CCceeEEEE
Confidence 888998876533 468999985
No 170
>PLN02366 spermidine synthase
Probab=98.17 E-value=7.7e-06 Score=82.29 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=66.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcC--C-CceEEEEecccccccccC-CCCccE
Q 012783 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ--V-NSVIRTIHADLRTFADNS-TVKCDK 407 (456)
Q Consensus 332 ~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g--~-~~~V~~~~~Da~~~~~~~-~~~fD~ 407 (456)
....+||++|+|.|+....+++. ++..+|+.+|+++..++.+++.+...+ + +.+++++.+|+..+.... .++||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 34689999999999999999875 445789999999999999999886542 2 347999999998775433 468999
Q ss_pred EEEcCCC
Q 012783 408 VLLDAPC 414 (456)
Q Consensus 408 VllDaPC 414 (456)
|++|.+-
T Consensus 169 Ii~D~~d 175 (308)
T PLN02366 169 IIVDSSD 175 (308)
T ss_pred EEEcCCC
Confidence 9999764
No 171
>PRK01581 speE spermidine synthase; Validated
Probab=98.16 E-value=8.7e-06 Score=82.97 Aligned_cols=80 Identities=10% Similarity=0.129 Sum_probs=62.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHH--H---HHcCC-CceEEEEecccccccccCCCCcc
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET--A---KLHQV-NSVIRTIHADLRTFADNSTVKCD 406 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n--~---~r~g~-~~~V~~~~~Da~~~~~~~~~~fD 406 (456)
...+||++|+|.|+....+++. ++..+|++||+++++++.+++. + .+.+. +.+++++.+|+..+.....++||
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 3469999999999977777764 4457999999999999999962 1 12222 34699999999987655557899
Q ss_pred EEEEcCC
Q 012783 407 KVLLDAP 413 (456)
Q Consensus 407 ~VllDaP 413 (456)
+|++|.|
T Consensus 229 VIIvDl~ 235 (374)
T PRK01581 229 VIIIDFP 235 (374)
T ss_pred EEEEcCC
Confidence 9999976
No 172
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.15 E-value=1.2e-06 Score=82.90 Aligned_cols=90 Identities=18% Similarity=0.259 Sum_probs=69.7
Q ss_pred HHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHH--HHcCCCceEEEEeccccccccc-CC
Q 012783 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA--KLHQVNSVIRTIHADLRTFADN-ST 402 (456)
Q Consensus 326 ~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~--~r~g~~~~V~~~~~Da~~~~~~-~~ 402 (456)
+..+.++.|++|||.|.|-|..++..+++ +..+|+.+|.++.-++.+.-|= ..+--. .|.++.+|+.++... .+
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~-~i~iilGD~~e~V~~~~D 203 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEI-AIKIILGDAYEVVKDFDD 203 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCcccccc-ccEEecccHHHHHhcCCc
Confidence 44567888999999999999999888875 4459999999999998877661 222112 378999999876443 35
Q ss_pred CCccEEEEcCCCCCCc
Q 012783 403 VKCDKVLLDAPCSGLG 418 (456)
Q Consensus 403 ~~fD~VllDaPCSg~G 418 (456)
++||.|+-|||.-+..
T Consensus 204 ~sfDaIiHDPPRfS~A 219 (287)
T COG2521 204 ESFDAIIHDPPRFSLA 219 (287)
T ss_pred cccceEeeCCCccchh
Confidence 7899999999986553
No 173
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.15 E-value=1.1e-05 Score=79.67 Aligned_cols=81 Identities=10% Similarity=0.062 Sum_probs=64.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCC---CceEEEEecccccccccCCCCccEEE
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV---NSVIRTIHADLRTFADNSTVKCDKVL 409 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~---~~~V~~~~~Da~~~~~~~~~~fD~Vl 409 (456)
.+.+||++|+|.|+.+..++... +..+|+++|++++.++.+++++...+. ..+++++.+|+..+.....++||+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 34599999999999988887753 356899999999999999998865431 23578889999876544457899999
Q ss_pred EcCCC
Q 012783 410 LDAPC 414 (456)
Q Consensus 410 lDaPC 414 (456)
+|++-
T Consensus 151 ~D~~~ 155 (270)
T TIGR00417 151 VDSTD 155 (270)
T ss_pred EeCCC
Confidence 99873
No 174
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.14 E-value=1.3e-05 Score=80.42 Aligned_cols=66 Identities=18% Similarity=0.162 Sum_probs=53.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccc
Q 012783 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397 (456)
Q Consensus 332 ~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~ 397 (456)
.++.+|||+|||+|.+|..+++.+....+++++|+|+++++.+++++....-.-.|..+++|....
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP 127 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence 357899999999999999999987545789999999999999999987643222377889998753
No 175
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.13 E-value=1.3e-05 Score=76.32 Aligned_cols=76 Identities=17% Similarity=0.126 Sum_probs=62.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEc
Q 012783 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (456)
Q Consensus 332 ~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllD 411 (456)
..+.+|||+|||+|..+..++.. ...++++|+++.++..+++++...+..+ +.+..+|+..++.....+||.|++.
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~D~i~~~ 119 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLK-IEYRCTSVEDLAEKGAKSFDVVTCM 119 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeCCHHHhhcCCCCCccEEEeh
Confidence 35789999999999999988874 3569999999999999999998887743 7888899877654334689999875
No 176
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=1.3e-05 Score=73.30 Aligned_cols=79 Identities=25% Similarity=0.331 Sum_probs=69.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEcC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllDa 412 (456)
....++++|||+|..+..+++...++....|.|+|++.++...+.++.+++. +.+++.|...-... +++|+++.+|
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~~~l~~--~~VDvLvfNP 118 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLLSGLRN--ESVDVLVFNP 118 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHHhhhcc--CCccEEEECC
Confidence 3678999999999999999999988888999999999999999999998886 67888887654333 7999999999
Q ss_pred CCC
Q 012783 413 PCS 415 (456)
Q Consensus 413 PCS 415 (456)
|.-
T Consensus 119 PYV 121 (209)
T KOG3191|consen 119 PYV 121 (209)
T ss_pred CcC
Confidence 974
No 177
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.09 E-value=3.5e-06 Score=77.91 Aligned_cols=75 Identities=29% Similarity=0.362 Sum_probs=49.8
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccc------c---cC
Q 012783 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA------D---NS 401 (456)
Q Consensus 331 ~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~------~---~~ 401 (456)
+.++.+|||+||||||+|..+++..+..++|+|+|+.+. ....+ +..+++|..... . ..
T Consensus 21 ~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~-~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 21 PGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQN-VSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TT-EEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred cccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccc-eeeeecccchhhHHHhhhhhcccc
Confidence 334689999999999999999998655799999999876 12233 566777765321 1 11
Q ss_pred CCCccEEEEcC--CCCCC
Q 012783 402 TVKCDKVLLDA--PCSGL 417 (456)
Q Consensus 402 ~~~fD~VllDa--PCSg~ 417 (456)
.++||.|++|. +|+|.
T Consensus 89 ~~~~dlv~~D~~~~~~g~ 106 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGD 106 (181)
T ss_dssp TCSESEEEE-------SS
T ss_pred ccCcceeccccccCCCCc
Confidence 25899999998 66654
No 178
>PRK03612 spermidine synthase; Provisional
Probab=98.08 E-value=7e-06 Score=88.46 Aligned_cols=83 Identities=10% Similarity=0.133 Sum_probs=65.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHH--HHHc---CC-CceEEEEecccccccccCCCCc
Q 012783 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET--AKLH---QV-NSVIRTIHADLRTFADNSTVKC 405 (456)
Q Consensus 332 ~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n--~~r~---g~-~~~V~~~~~Da~~~~~~~~~~f 405 (456)
.++.+|||+|+|.|..+..+++. ++..+|+++|+|++.++.++++ +... .. +.+++++.+|+..+.....++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 45689999999999999988874 3337999999999999999984 3222 12 2368999999988765445789
Q ss_pred cEEEEcCCCC
Q 012783 406 DKVLLDAPCS 415 (456)
Q Consensus 406 D~VllDaPCS 415 (456)
|.|++|+|-.
T Consensus 375 DvIi~D~~~~ 384 (521)
T PRK03612 375 DVIIVDLPDP 384 (521)
T ss_pred CEEEEeCCCC
Confidence 9999998754
No 179
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.07 E-value=1.3e-05 Score=85.24 Aligned_cols=94 Identities=17% Similarity=0.166 Sum_probs=68.8
Q ss_pred ccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccc
Q 012783 317 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396 (456)
Q Consensus 317 vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~ 396 (456)
+|......+...+.+.++.+|||+|||+|..+..++.. .++|+++|+++.+++.+++. .+....+.++++|+..
T Consensus 21 ~~~~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~ 94 (475)
T PLN02336 21 LDKEERPEILSLLPPYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTS 94 (475)
T ss_pred cCchhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccc
Confidence 34444456667777778889999999999999999986 36899999999999876542 2222348899999863
Q ss_pred cc-ccCCCCccEEEEcCCCCC
Q 012783 397 FA-DNSTVKCDKVLLDAPCSG 416 (456)
Q Consensus 397 ~~-~~~~~~fD~VllDaPCSg 416 (456)
.. ....++||.|++..++.-
T Consensus 95 ~~~~~~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 95 PDLNISDGSVDLIFSNWLLMY 115 (475)
T ss_pred cccCCCCCCEEEEehhhhHHh
Confidence 21 122368999999876543
No 180
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.07 E-value=1.2e-05 Score=81.94 Aligned_cols=74 Identities=16% Similarity=0.158 Sum_probs=60.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEc
Q 012783 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (456)
Q Consensus 332 ~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllD 411 (456)
.++.+|||+|||+|..+..+++..+ .++|+++|+++++++.++++.. ..+ +.++.+|+..++.. .+.||.|++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~---~~~-i~~i~gD~e~lp~~-~~sFDvVIs~ 185 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKE-CKIIEGDAEDLPFP-TDYADRYVSA 185 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhh---ccC-CeEEeccHHhCCCC-CCceeEEEEc
Confidence 4688999999999999999988764 4799999999999999998764 223 67899998876532 3689999884
No 181
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.03 E-value=1.1e-05 Score=75.29 Aligned_cols=80 Identities=19% Similarity=0.172 Sum_probs=58.4
Q ss_pred HHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCC
Q 012783 323 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402 (456)
Q Consensus 323 ~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~ 402 (456)
+.+...|.-..-.++||+|||.|..|..+|.+ ...++|+|+++..++.+++++.. .++ |.++++|...+.+ .
T Consensus 33 ~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~--~~~-V~~~~~dvp~~~P--~ 104 (201)
T PF05401_consen 33 ATLLAALPRRRYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLAG--LPH-VEWIQADVPEFWP--E 104 (201)
T ss_dssp HHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT---SS-EEEEES-TTT-----S
T ss_pred HHHHHhcCccccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCC--CCC-eEEEECcCCCCCC--C
Confidence 33333455555688999999999999999987 46899999999999999998874 455 8999999977543 4
Q ss_pred CCccEEEE
Q 012783 403 VKCDKVLL 410 (456)
Q Consensus 403 ~~fD~Vll 410 (456)
++||+|++
T Consensus 105 ~~FDLIV~ 112 (201)
T PF05401_consen 105 GRFDLIVL 112 (201)
T ss_dssp S-EEEEEE
T ss_pred CCeeEEEE
Confidence 79999997
No 182
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.02 E-value=3.4e-05 Score=73.89 Aligned_cols=74 Identities=11% Similarity=0.116 Sum_probs=57.0
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCC--------------CceEEEEecccc
Q 012783 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV--------------NSVIRTIHADLR 395 (456)
Q Consensus 330 ~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~--------------~~~V~~~~~Da~ 395 (456)
.+.++.+|||+|||.|.-+..+|++ ...|+|+|+++..++.+.. +.++ ...|++.++|+.
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~ 107 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFF 107 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECccc
Confidence 4456789999999999999999985 5689999999999997642 2222 234888999998
Q ss_pred cccccCCCCccEEE
Q 012783 396 TFADNSTVKCDKVL 409 (456)
Q Consensus 396 ~~~~~~~~~fD~Vl 409 (456)
.+.......||.|+
T Consensus 108 ~l~~~~~~~fd~v~ 121 (218)
T PRK13255 108 ALTAADLADVDAVY 121 (218)
T ss_pred CCCcccCCCeeEEE
Confidence 87543335788887
No 183
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.01 E-value=2.3e-05 Score=74.83 Aligned_cols=73 Identities=10% Similarity=0.078 Sum_probs=56.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCC--------------CceEEEEecccccc
Q 012783 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV--------------NSVIRTIHADLRTF 397 (456)
Q Consensus 332 ~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~--------------~~~V~~~~~Da~~~ 397 (456)
.++.+|||+|||.|.-+..+|++ .-.|+|+|+|+..++.+... .|+ ...|+++++|+..+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCC
Confidence 57889999999999999999985 56899999999999976432 222 12478899999877
Q ss_pred cccCCCCccEEEE
Q 012783 398 ADNSTVKCDKVLL 410 (456)
Q Consensus 398 ~~~~~~~fD~Vll 410 (456)
.....+.||.|+-
T Consensus 107 ~~~~~~~fD~i~D 119 (213)
T TIGR03840 107 TAADLGPVDAVYD 119 (213)
T ss_pred CcccCCCcCEEEe
Confidence 5432357888854
No 184
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.00 E-value=8.6e-06 Score=78.65 Aligned_cols=74 Identities=24% Similarity=0.259 Sum_probs=57.2
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc-----eEEEEecccccccccCCCC
Q 012783 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS-----VIRTIHADLRTFADNSTVK 404 (456)
Q Consensus 330 ~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~-----~V~~~~~Da~~~~~~~~~~ 404 (456)
.+..|.+|||+|||.|-.|.+||.+ ...|+|+|+++.+++.+++..+.....+ ++.+.+.|+... .+.
T Consensus 86 k~~~g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----~~~ 158 (282)
T KOG1270|consen 86 KPLLGMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL----TGK 158 (282)
T ss_pred cccCCceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc----ccc
Confidence 4455788999999999999999987 5799999999999999999944332222 355666666543 256
Q ss_pred ccEEEE
Q 012783 405 CDKVLL 410 (456)
Q Consensus 405 fD~Vll 410 (456)
||.|+|
T Consensus 159 fDaVvc 164 (282)
T KOG1270|consen 159 FDAVVC 164 (282)
T ss_pred cceeee
Confidence 999987
No 185
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.00 E-value=1.4e-06 Score=72.06 Aligned_cols=71 Identities=15% Similarity=0.112 Sum_probs=46.5
Q ss_pred EEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccC-CCCccEEEE
Q 012783 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLL 410 (456)
Q Consensus 338 LDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~-~~~fD~Vll 410 (456)
||+|||+|..+..+++.. +..+++++|+|+.+++.+++++...+..+ ...+..+........ .++||.|++
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~V~~ 72 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYDPPESFDLVVA 72 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEE
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcccccccceehh
Confidence 799999999999999986 57899999999999999999998887654 333443333322222 258999997
No 186
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=1.9e-05 Score=74.32 Aligned_cols=77 Identities=27% Similarity=0.312 Sum_probs=58.7
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc------cC-CC
Q 012783 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD------NS-TV 403 (456)
Q Consensus 331 ~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~------~~-~~ 403 (456)
..+|+.|+|+||+|||++..+++.++..+.|+|+|+.+-.. +.+ |.++++|++.-.. .. ..
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~-V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPG-VIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCC-ceEEeeeccCccHHHHHHHHcCCC
Confidence 45799999999999999999999999888999999976522 334 7899999875321 11 23
Q ss_pred CccEEEEcCCCCCCcc
Q 012783 404 KCDKVLLDAPCSGLGV 419 (456)
Q Consensus 404 ~fD~VllDaPCSg~G~ 419 (456)
++|+|++|+----+|.
T Consensus 111 ~~DvV~sD~ap~~~g~ 126 (205)
T COG0293 111 PVDVVLSDMAPNTSGN 126 (205)
T ss_pred CcceEEecCCCCcCCC
Confidence 5799999965544555
No 187
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.97 E-value=3.4e-05 Score=72.60 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=63.2
Q ss_pred CeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc-c-CCCCccEEEEcC
Q 012783 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-N-STVKCDKVLLDA 412 (456)
Q Consensus 335 ~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~-~-~~~~fD~VllDa 412 (456)
..+||+|||.|...+.+|... ++..++|+|++..++..+...+.+.+++| +.++++|+..+.. . .++++|.|.+.=
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred CeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhcccCCchheEEEeC
Confidence 389999999999999999985 57899999999999999999999999998 8999999987432 2 236889998876
Q ss_pred CC
Q 012783 413 PC 414 (456)
Q Consensus 413 PC 414 (456)
|+
T Consensus 97 PD 98 (195)
T PF02390_consen 97 PD 98 (195)
T ss_dssp --
T ss_pred CC
Confidence 65
No 188
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.97 E-value=7.4e-05 Score=70.94 Aligned_cols=83 Identities=23% Similarity=0.286 Sum_probs=63.8
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccC--CCCccE
Q 012783 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVKCDK 407 (456)
Q Consensus 330 ~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~--~~~fD~ 407 (456)
.+.+|.+||-+||++|..-.|++..+++.|.|+|||.++...+.+-+-+++- +| |..+.+|++...... -+.+|.
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~N-IiPIl~DAr~P~~Y~~lv~~VDv 146 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PN-IIPILEDARHPEKYRMLVEMVDV 146 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TT-EEEEES-TTSGGGGTTTS--EEE
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--Cc-eeeeeccCCChHHhhcccccccE
Confidence 4678999999999999999999999998999999999999988888777654 34 778999998654332 358999
Q ss_pred EEEcCCCC
Q 012783 408 VLLDAPCS 415 (456)
Q Consensus 408 VllDaPCS 415 (456)
|+.|+.=.
T Consensus 147 I~~DVaQp 154 (229)
T PF01269_consen 147 IFQDVAQP 154 (229)
T ss_dssp EEEE-SST
T ss_pred EEecCCCh
Confidence 99998643
No 189
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.96 E-value=2.5e-05 Score=72.62 Aligned_cols=70 Identities=24% Similarity=0.302 Sum_probs=54.6
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccc-cccCCCCccEEE
Q 012783 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-ADNSTVKCDKVL 409 (456)
Q Consensus 331 ~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~-~~~~~~~fD~Vl 409 (456)
+.||.+|||+|||.|..-.++.+. .+...+++|++++.+....+ .|+ .++++|+..- ....+.+||.|+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~----rGv----~Viq~Dld~gL~~f~d~sFD~VI 80 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVA----RGV----SVIQGDLDEGLADFPDQSFDYVI 80 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHH----cCC----CEEECCHHHhHhhCCCCCccEEe
Confidence 467999999999999988888775 36789999999998876544 355 4688998653 334467999998
Q ss_pred E
Q 012783 410 L 410 (456)
Q Consensus 410 l 410 (456)
+
T Consensus 81 l 81 (193)
T PF07021_consen 81 L 81 (193)
T ss_pred h
Confidence 7
No 190
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.91 E-value=1.5e-05 Score=79.68 Aligned_cols=91 Identities=25% Similarity=0.397 Sum_probs=66.0
Q ss_pred HHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc----
Q 012783 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---- 399 (456)
Q Consensus 324 lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---- 399 (456)
-++..|.++++..++|+--|.||.|..+++..++ ++|+|+|.++..++.++++++.+ .+++.+++++..++..
T Consensus 11 Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~ 87 (310)
T PF01795_consen 11 EVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKE 87 (310)
T ss_dssp HHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHH
T ss_pred HHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHH
Confidence 4567788999999999999999999999998876 99999999999999998887755 4568999999876543
Q ss_pred c-CCCCccEEEEcCCCCCC
Q 012783 400 N-STVKCDKVLLDAPCSGL 417 (456)
Q Consensus 400 ~-~~~~fD~VllDaPCSg~ 417 (456)
. ....+|.||+|--+|..
T Consensus 88 ~~~~~~~dgiL~DLGvSS~ 106 (310)
T PF01795_consen 88 LNGINKVDGILFDLGVSSM 106 (310)
T ss_dssp TTTTS-EEEEEEE-S--HH
T ss_pred ccCCCccCEEEEccccCHH
Confidence 1 23579999999998864
No 191
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.91 E-value=3.4e-05 Score=76.04 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=56.7
Q ss_pred CCCCeEEEEcCCCch----HHHHHHHHcCC----CceEEEEeCCHHHHHHHHHHHH----HcC-----------------
Q 012783 332 QPGQSIVDCCAAPGG----KTLYMASCLSG----QGLVYAIDINKGRLRILNETAK----LHQ----------------- 382 (456)
Q Consensus 332 ~~g~~VLDlcAGpGg----kt~~la~~~~~----~g~V~AvDis~~rl~~l~~n~~----r~g----------------- 382 (456)
.++.+|||+|||+|. .++.+++..+. ..+|+|+|+|+.+++.+++.+- ..+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 456799999999996 45556665432 4689999999999999988531 001
Q ss_pred -----CCceEEEEecccccccccCCCCccEEEE
Q 012783 383 -----VNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 383 -----~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
+.+.|++.++|+...+. ..++||+|+|
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~-~~~~fD~I~c 209 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESP-PLGDFDLIFC 209 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCC-ccCCCCEEEe
Confidence 22358899999877543 2468999996
No 192
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.90 E-value=3.1e-05 Score=78.10 Aligned_cols=78 Identities=24% Similarity=0.234 Sum_probs=58.8
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 331 ~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
+.+|.+|||+||+|||+|-.++++ .++|+|||..+ +...+. -+.+|+.+.+|...+... .+.+|.|+|
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-----l~~~L~---~~~~V~h~~~d~fr~~p~-~~~vDwvVc 276 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-----MAQSLM---DTGQVEHLRADGFKFRPP-RKNVDWLVC 276 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-----cCHhhh---CCCCEEEEeccCcccCCC-CCCCCEEEE
Confidence 468999999999999999999986 46999999543 122221 233588899998776543 468999999
Q ss_pred cCCCCCCccc
Q 012783 411 DAPCSGLGVL 420 (456)
Q Consensus 411 DaPCSg~G~i 420 (456)
|.-|.-.-+.
T Consensus 277 Dmve~P~rva 286 (357)
T PRK11760 277 DMVEKPARVA 286 (357)
T ss_pred ecccCHHHHH
Confidence 9999866543
No 193
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.90 E-value=4e-05 Score=71.74 Aligned_cols=72 Identities=19% Similarity=0.261 Sum_probs=53.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccc-ccccCCCCccEEEE
Q 012783 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADNSTVKCDKVLL 410 (456)
Q Consensus 332 ~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~-~~~~~~~~fD~Vll 410 (456)
.++.+|||+|||+|..+..++... ...++++|+++++++.++++ + +.++++|+.. ++...+++||.|++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~----~----~~~~~~d~~~~l~~~~~~sfD~Vi~ 81 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR----G----VNVIQGDLDEGLEAFPDKSFDYVIL 81 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc----C----CeEEEEEhhhcccccCCCCcCEEEE
Confidence 367899999999999998887653 45789999999998887541 2 4677788765 22233468999998
Q ss_pred cCC
Q 012783 411 DAP 413 (456)
Q Consensus 411 DaP 413 (456)
..+
T Consensus 82 ~~~ 84 (194)
T TIGR02081 82 SQT 84 (194)
T ss_pred hhH
Confidence 644
No 194
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.89 E-value=2.9e-05 Score=73.20 Aligned_cols=89 Identities=16% Similarity=0.085 Sum_probs=66.3
Q ss_pred ccccccchHHHHHHHhcCCCC--CCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEE
Q 012783 313 GLCAVQDESAGLVVAVVDPQP--GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTI 390 (456)
Q Consensus 313 G~~~vQd~ss~lv~~~l~~~~--g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~ 390 (456)
-...||-+-+..+.++|+..+ ..-|||+|||+|-.+..+.+. ....+++|||+.|++.+.+. .+. . .++
T Consensus 28 ri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~--e~e--g--dli 98 (270)
T KOG1541|consen 28 RIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVER--ELE--G--DLI 98 (270)
T ss_pred eeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHh--hhh--c--Cee
Confidence 346788888888888888766 678999999999888766652 46789999999999999872 222 1 256
Q ss_pred ecccccccccCCCCccEEEE
Q 012783 391 HADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 391 ~~Da~~~~~~~~~~fD~Vll 410 (456)
.+|.-+-.+..++.||.||.
T Consensus 99 l~DMG~GlpfrpGtFDg~IS 118 (270)
T KOG1541|consen 99 LCDMGEGLPFRPGTFDGVIS 118 (270)
T ss_pred eeecCCCCCCCCCccceEEE
Confidence 67765444445689998764
No 195
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.84 E-value=1.9e-05 Score=72.63 Aligned_cols=69 Identities=20% Similarity=0.218 Sum_probs=59.7
Q ss_pred CeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 335 ~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
+.+.|+|||+|-.+...|+. ..+|+|++.++.+...+.+|++..|..| +.++.+|+..+.. +..|.|+|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n-~evv~gDA~~y~f---e~ADvvic 102 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVN-WEVVVGDARDYDF---ENADVVIC 102 (252)
T ss_pred hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcc-eEEEecccccccc---cccceeHH
Confidence 78999999999999888876 5689999999999999999998888877 8999999988753 35566665
No 196
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.83 E-value=0.00012 Score=78.38 Aligned_cols=109 Identities=28% Similarity=0.375 Sum_probs=86.1
Q ss_pred ccccccchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCC---CceEEEEeCCHHHHHHHHHHHHHcCCCceEEE
Q 012783 313 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG---QGLVYAIDINKGRLRILNETAKLHQVNSVIRT 389 (456)
Q Consensus 313 G~~~vQd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~---~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~ 389 (456)
|.|+---..+.+++..+.+.+..+|+|-|||+||.-+..+..+.. ...+++.|++......++-|+--.|+...+..
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence 554444456778899999999999999999999999988888753 37899999999999999999998888743456
Q ss_pred Eeccccccccc----CCCCccEEEEcCCCCCCcccc
Q 012783 390 IHADLRTFADN----STVKCDKVLLDAPCSGLGVLS 421 (456)
Q Consensus 390 ~~~Da~~~~~~----~~~~fD~VllDaPCSg~G~ir 421 (456)
.++|...-+.. ..+.||.|+.+||-|+.|...
T Consensus 246 ~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~ 281 (489)
T COG0286 246 RHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGG 281 (489)
T ss_pred cccccccCCcccccCCccceeEEEeCCCCCcccccc
Confidence 67765433322 346799999999999776654
No 197
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.83 E-value=8.9e-05 Score=71.99 Aligned_cols=91 Identities=16% Similarity=0.230 Sum_probs=75.3
Q ss_pred HHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCC
Q 012783 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403 (456)
Q Consensus 324 lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~ 403 (456)
.++.-.++++++.||++|-|||..|..|.+. ..+|+|+|+++.++..+.++.+-....+..+++++|....+. .
T Consensus 49 ~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~---P 122 (315)
T KOG0820|consen 49 QIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL---P 122 (315)
T ss_pred HHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC---c
Confidence 3455667899999999999999999999987 578999999999999999988766666889999999865432 4
Q ss_pred CccEEEEcCCC--CCCccc
Q 012783 404 KCDKVLLDAPC--SGLGVL 420 (456)
Q Consensus 404 ~fD~VllDaPC--Sg~G~i 420 (456)
.||.++.+.|. |+-+++
T Consensus 123 ~fd~cVsNlPyqISSp~vf 141 (315)
T KOG0820|consen 123 RFDGCVSNLPYQISSPLVF 141 (315)
T ss_pred ccceeeccCCccccCHHHH
Confidence 69999999888 444543
No 198
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.82 E-value=0.00087 Score=66.61 Aligned_cols=90 Identities=14% Similarity=0.157 Sum_probs=62.6
Q ss_pred HHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCC
Q 012783 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404 (456)
Q Consensus 325 v~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~ 404 (456)
+...+..-.|.+|||+|||.|+.+..|+.. +...|+++|.+...+-..+---+-.|.+..+..+-.-...++. .+.
T Consensus 107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~--~~~ 182 (315)
T PF08003_consen 107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN--LGA 182 (315)
T ss_pred HHhhhCCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc--cCC
Confidence 344444567999999999999999999886 4568999999988776544444445555434333233344444 478
Q ss_pred ccEEEEcCCCCCCcccccCC
Q 012783 405 CDKVLLDAPCSGLGVLSKTC 424 (456)
Q Consensus 405 fD~VllDaPCSg~G~irr~p 424 (456)
||.||+ +||+=++.
T Consensus 183 FDtVF~------MGVLYHrr 196 (315)
T PF08003_consen 183 FDTVFS------MGVLYHRR 196 (315)
T ss_pred cCEEEE------eeehhccC
Confidence 999998 89874433
No 199
>PLN02823 spermine synthase
Probab=97.79 E-value=9.3e-05 Score=75.34 Aligned_cols=78 Identities=13% Similarity=0.129 Sum_probs=64.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcC---CCceEEEEecccccccccCCCCccEEEE
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ---VNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g---~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
..+||.+|+|.|+.+..+++. .+..+|++||++++.++.+++.+...+ -+.+++++.+|+..+.....++||+|++
T Consensus 104 pk~VLiiGgG~G~~~re~l~~-~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRH-KTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCEEEEECCCchHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 468999999999999888875 335689999999999999999875432 1346999999999886655678999999
Q ss_pred cC
Q 012783 411 DA 412 (456)
Q Consensus 411 Da 412 (456)
|+
T Consensus 183 D~ 184 (336)
T PLN02823 183 DL 184 (336)
T ss_pred cC
Confidence 96
No 200
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.79 E-value=9.8e-05 Score=72.91 Aligned_cols=92 Identities=24% Similarity=0.351 Sum_probs=78.6
Q ss_pred HHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---
Q 012783 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--- 400 (456)
Q Consensus 324 lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~--- 400 (456)
-++..|.+.|+..++|+.-|-||.|-.+.+.++..|+++|+|.++..++.+++.+..++ .+++++++....+...
T Consensus 14 E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~ 91 (314)
T COG0275 14 EVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKE 91 (314)
T ss_pred HHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHh
Confidence 45778899999999999999999999999999888999999999999999999998877 3589999887665432
Q ss_pred -CCCCccEEEEcCCCCCC
Q 012783 401 -STVKCDKVLLDAPCSGL 417 (456)
Q Consensus 401 -~~~~fD~VllDaPCSg~ 417 (456)
..+++|.||+|---|+.
T Consensus 92 ~~i~~vDGiL~DLGVSS~ 109 (314)
T COG0275 92 LGIGKVDGILLDLGVSSP 109 (314)
T ss_pred cCCCceeEEEEeccCCcc
Confidence 13589999999877754
No 201
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.78 E-value=3.7e-05 Score=76.18 Aligned_cols=79 Identities=20% Similarity=0.305 Sum_probs=61.2
Q ss_pred eEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccC-CCCccEEEEcCCC
Q 012783 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLLDAPC 414 (456)
Q Consensus 336 ~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~-~~~fD~VllDaPC 414 (456)
+|+|+|||.||.+.-+.+. +-..|+|+|+++..++..+.|... .++++|...+.... ...+|+|+.++||
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gpPC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGFPC 72 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCCCC
Confidence 6899999999998877654 345789999999999999888532 14667877765432 3579999999999
Q ss_pred CCCcccccC
Q 012783 415 SGLGVLSKT 423 (456)
Q Consensus 415 Sg~G~irr~ 423 (456)
.+.-..+++
T Consensus 73 q~fS~ag~~ 81 (275)
T cd00315 73 QPFSIAGKR 81 (275)
T ss_pred hhhhHHhhc
Confidence 877666653
No 202
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=9.2e-05 Score=69.39 Aligned_cols=89 Identities=18% Similarity=0.169 Sum_probs=71.8
Q ss_pred HHhcC--CCCCCeEEEEcCCCchHHHHHHHHcCCCceE-EEEeCCHHHHHHHHHHHHHcCC---------CceEEEEecc
Q 012783 326 VAVVD--PQPGQSIVDCCAAPGGKTLYMASCLSGQGLV-YAIDINKGRLRILNETAKLHQV---------NSVIRTIHAD 393 (456)
Q Consensus 326 ~~~l~--~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V-~AvDis~~rl~~l~~n~~r~g~---------~~~V~~~~~D 393 (456)
.+.|+ .+||...||+|+|+|..|..++.+++..|.+ +++|..++-++..++|+...-- ...+.++.+|
T Consensus 73 le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGD 152 (237)
T KOG1661|consen 73 LEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGD 152 (237)
T ss_pred HHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCC
Confidence 45566 7899999999999999999999888877765 9999999999999999876531 1347788999
Q ss_pred cccccccCCCCccEEEEcCCCC
Q 012783 394 LRTFADNSTVKCDKVLLDAPCS 415 (456)
Q Consensus 394 a~~~~~~~~~~fD~VllDaPCS 415 (456)
.+..... ..+||+|.|-|--|
T Consensus 153 gr~g~~e-~a~YDaIhvGAaa~ 173 (237)
T KOG1661|consen 153 GRKGYAE-QAPYDAIHVGAAAS 173 (237)
T ss_pred ccccCCc-cCCcceEEEccCcc
Confidence 9876543 37899999954433
No 203
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.76 E-value=9.7e-05 Score=79.78 Aligned_cols=85 Identities=18% Similarity=0.189 Sum_probs=63.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCC-------CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccc----cccCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSG-------QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF----ADNST 402 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~-------~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~----~~~~~ 402 (456)
+.+|||.|||+|++.+.++..+.. .-.++++|+++..+..++.++..++..+ +.+.+.|.... .....
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~-~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLE-INVINFNSLSYVLLNIESYL 110 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCC-ceeeeccccccccccccccc
Confidence 458999999999999999887632 2478999999999999999998876222 44555654321 11123
Q ss_pred CCccEEEEcCCCCCCcc
Q 012783 403 VKCDKVLLDAPCSGLGV 419 (456)
Q Consensus 403 ~~fD~VllDaPCSg~G~ 419 (456)
+.||.|+.+||....-.
T Consensus 111 ~~fD~IIgNPPy~~~k~ 127 (524)
T TIGR02987 111 DLFDIVITNPPYGRLKP 127 (524)
T ss_pred CcccEEEeCCCccccCc
Confidence 58999999999987653
No 204
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.72 E-value=7.5e-05 Score=78.86 Aligned_cols=76 Identities=20% Similarity=0.323 Sum_probs=59.6
Q ss_pred CCeEEEEcCCCchHHHHHHHH---cCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 334 GQSIVDCCAAPGGKTLYMASC---LSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~---~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
+..|+|+|||+|-.+...++. .+...+|+|||.|+.....+++.++..|..++|+++++|++++... +++|+|+.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp--ekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP--EKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS--S-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC--CceeEEEE
Confidence 568999999999997655443 3345799999999999999998888999988899999999987543 58999987
Q ss_pred c
Q 012783 411 D 411 (456)
Q Consensus 411 D 411 (456)
.
T Consensus 265 E 265 (448)
T PF05185_consen 265 E 265 (448)
T ss_dssp -
T ss_pred e
Confidence 5
No 205
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.69 E-value=3.3e-05 Score=77.01 Aligned_cols=93 Identities=20% Similarity=0.252 Sum_probs=74.2
Q ss_pred hHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHH-------HHHHHHHHcCCCc-eEEEEe
Q 012783 320 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLR-------ILNETAKLHQVNS-VIRTIH 391 (456)
Q Consensus 320 ~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~-------~l~~n~~r~g~~~-~V~~~~ 391 (456)
+-|-+.+....+.||+.|.|=..|+|+.-...|.. ++.|++-||+-.++. ..+.|++++|... -+.++.
T Consensus 195 eLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~ 271 (421)
T KOG2671|consen 195 ELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLT 271 (421)
T ss_pred hHHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheee
Confidence 34455566777899999999999999997777765 579999999998887 5688999999653 355778
Q ss_pred cccccccccCCCCccEEEEcCCCC
Q 012783 392 ADLRTFADNSTVKCDKVLLDAPCS 415 (456)
Q Consensus 392 ~Da~~~~~~~~~~fD~VllDaPCS 415 (456)
+|....+-.....||.|+||||..
T Consensus 272 ~D~sn~~~rsn~~fDaIvcDPPYG 295 (421)
T KOG2671|consen 272 ADFSNPPLRSNLKFDAIVCDPPYG 295 (421)
T ss_pred ecccCcchhhcceeeEEEeCCCcc
Confidence 898765444456899999999984
No 206
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.68 E-value=0.00016 Score=69.63 Aligned_cols=78 Identities=15% Similarity=0.098 Sum_probs=67.2
Q ss_pred CeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccC--CCCccEEEEcC
Q 012783 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVKCDKVLLDA 412 (456)
Q Consensus 335 ~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~--~~~fD~VllDa 412 (456)
..+||+|||.|...+++|..- ++..++|+|+....+..+.+.+++.|++| +.+++.||..+.... .++.|.|.+.=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l~N-lri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGLKN-LRLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCCCc-EEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence 589999999999999999984 56789999999999999999999999986 899999998765433 24788888865
Q ss_pred CC
Q 012783 413 PC 414 (456)
Q Consensus 413 PC 414 (456)
|+
T Consensus 128 PD 129 (227)
T COG0220 128 PD 129 (227)
T ss_pred CC
Confidence 54
No 207
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.65 E-value=6e-05 Score=72.60 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=36.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHH-HHHH
Q 012783 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRI-LNET 377 (456)
Q Consensus 332 ~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~-l~~n 377 (456)
.+|..|||+|||||++|..+++. +.++|+|+|++..++.. ++++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~~l~~~ 118 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAEKLRQD 118 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHhcC
Confidence 36789999999999999999985 46799999999987764 4443
No 208
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.63 E-value=0.00023 Score=63.48 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=40.3
Q ss_pred HHHHHHHhcC-CCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHH
Q 012783 321 SAGLVVAVVD-PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRI 373 (456)
Q Consensus 321 ss~lv~~~l~-~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~ 373 (456)
-+.++..++. ..++.+|||+|||.|..+..++.. ..+|+++|+++.+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK 59 (161)
T ss_dssp HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH
T ss_pred HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh
Confidence 3445555554 567899999999999999999765 3499999999999987
No 209
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.60 E-value=0.00023 Score=71.55 Aligned_cols=75 Identities=17% Similarity=0.264 Sum_probs=63.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 332 ~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
-.+..|||+|||+|-.++..|+. +..+|+|||-+.-. +.+.+.++.+++.++|+++.+.+.++.-. .+++|+|+.
T Consensus 59 f~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP-~eKVDiIvS 133 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELP-VEKVDIIVS 133 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecC-ccceeEEee
Confidence 35889999999999999998886 47899999998766 99999999999999999999998776222 378898875
No 210
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.60 E-value=0.00019 Score=70.52 Aligned_cols=89 Identities=19% Similarity=0.217 Sum_probs=70.4
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc
Q 012783 321 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400 (456)
Q Consensus 321 ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~ 400 (456)
-...++..+++.+++.|||+|+|+|..|..+++.. ..|+++|+++..++.+++... ...+++++++|+..+...
T Consensus 18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGG
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccH
Confidence 34466777888899999999999999999999873 789999999999999998655 233489999999876543
Q ss_pred C--CCCccEEEEcCCCC
Q 012783 401 S--TVKCDKVLLDAPCS 415 (456)
Q Consensus 401 ~--~~~fD~VllDaPCS 415 (456)
. ......|+.+.|.+
T Consensus 92 ~~~~~~~~~vv~NlPy~ 108 (262)
T PF00398_consen 92 DLLKNQPLLVVGNLPYN 108 (262)
T ss_dssp GHCSSSEEEEEEEETGT
T ss_pred HhhcCCceEEEEEeccc
Confidence 2 23456888888874
No 211
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.59 E-value=0.0003 Score=65.61 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=62.3
Q ss_pred eEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEcCCCC
Q 012783 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCS 415 (456)
Q Consensus 336 ~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllDaPCS 415 (456)
+|+|+|+|.|-=++.+|-.. +..+++-+|...+++.-+++-...+|++| ++++++.+.. ......||.|+.=|=++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~--~~~~~~fd~v~aRAv~~ 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRAEE--PEYRESFDVVTARAVAP 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-HHH--TTTTT-EEEEEEESSSS
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeeecc--cccCCCccEEEeehhcC
Confidence 79999999998888888765 57899999999999999999999999997 8999999987 22347899999866543
No 212
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.53 E-value=0.0004 Score=66.15 Aligned_cols=80 Identities=16% Similarity=0.150 Sum_probs=68.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEcCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllDaP 413 (456)
+.+|+|+|+|+|-=++.+|- +.++.+|+-+|...+|+.-+++-.+.+|++| ++++++.+..+...... ||.|.+=|=
T Consensus 68 ~~~~~DIGSGaGfPGipLAI-~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~i~~~RaE~~~~~~~~-~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAI-AFPDLKVTLLESLGKKIAFLREVKKELGLEN-VEIVHGRAEEFGQEKKQ-YDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHH-hccCCcEEEEccCchHHHHHHHHHHHhCCCC-eEEehhhHhhccccccc-CcEEEeehc
Confidence 68999999999998888884 4567789999999999999999999999998 89999999887654322 999998776
Q ss_pred CCC
Q 012783 414 CSG 416 (456)
Q Consensus 414 CSg 416 (456)
++-
T Consensus 145 a~L 147 (215)
T COG0357 145 ASL 147 (215)
T ss_pred cch
Confidence 653
No 213
>PRK04148 hypothetical protein; Provisional
Probab=97.51 E-value=0.00046 Score=60.84 Aligned_cols=75 Identities=12% Similarity=-0.012 Sum_probs=52.4
Q ss_pred HHHhcCCCCCCeEEEEcCCCch-HHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCC
Q 012783 325 VVAVVDPQPGQSIVDCCAAPGG-KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403 (456)
Q Consensus 325 v~~~l~~~~g~~VLDlcAGpGg-kt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~ 403 (456)
+...+....+.+|||+|+|.|. .+..+++. ...|+|+|+++.+++.++++ + +.++.+|.++.....-+
T Consensus 8 l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----~----~~~v~dDlf~p~~~~y~ 76 (134)
T PRK04148 8 IAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----G----LNAFVDDLFNPNLEIYK 76 (134)
T ss_pred HHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----C----CeEEECcCCCCCHHHHh
Confidence 3344444457899999999997 66666653 46999999999988877664 3 45788998765433234
Q ss_pred CccEEEE
Q 012783 404 KCDKVLL 410 (456)
Q Consensus 404 ~fD~Vll 410 (456)
.+|+|..
T Consensus 77 ~a~liys 83 (134)
T PRK04148 77 NAKLIYS 83 (134)
T ss_pred cCCEEEE
Confidence 5677653
No 214
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.50 E-value=0.00023 Score=68.51 Aligned_cols=89 Identities=22% Similarity=0.252 Sum_probs=59.8
Q ss_pred HHHHHhcCCCCCC--eEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCC--------CceEEEEec
Q 012783 323 GLVVAVVDPQPGQ--SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV--------NSVIRTIHA 392 (456)
Q Consensus 323 ~lv~~~l~~~~g~--~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~--------~~~V~~~~~ 392 (456)
..++.++.+++|. +|||+.||-|.-++.+|.. .++|+++|.|+-....+++-+++..- -.+++++++
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 4567777777764 8999999999999999875 36899999999988888877765421 136899999
Q ss_pred ccccccccCCCCccEEEEcCCC
Q 012783 393 DLRTFADNSTVKCDKVLLDAPC 414 (456)
Q Consensus 393 Da~~~~~~~~~~fD~VllDaPC 414 (456)
|+.++......+||+|.+||=-
T Consensus 140 d~~~~L~~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 140 DALEYLRQPDNSFDVVYFDPMF 161 (234)
T ss_dssp -CCCHCCCHSS--SEEEE--S-
T ss_pred CHHHHHhhcCCCCCEEEECCCC
Confidence 9988765435789999999843
No 215
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.47 E-value=0.00045 Score=60.88 Aligned_cols=58 Identities=26% Similarity=0.369 Sum_probs=50.5
Q ss_pred eEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccc
Q 012783 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395 (456)
Q Consensus 336 ~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~ 395 (456)
.|||+||+.|..+..++... +.++|+++|.++...+.+++|++.+++.+ +.+++....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeee
Confidence 48999999999999998864 55699999999999999999999998876 777776654
No 216
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.44 E-value=0.00034 Score=72.35 Aligned_cols=79 Identities=22% Similarity=0.271 Sum_probs=62.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEecccccccccCCCCccEEEEcC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS-VIRTIHADLRTFADNSTVKCDKVLLDA 412 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~-~V~~~~~Da~~~~~~~~~~fD~VllDa 412 (456)
+-+|||.-||+|--++..+..+++...|+++|+|++.++.+++|++.+++.+ ++++.+.|+..+.......||.|=+||
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP 129 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP 129 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence 4589999999999999999987777899999999999999999999999998 789999999876533457899999997
No 217
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.44 E-value=0.0006 Score=61.88 Aligned_cols=90 Identities=19% Similarity=0.209 Sum_probs=70.4
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccc---
Q 012783 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA--- 398 (456)
Q Consensus 322 s~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~--- 398 (456)
+...+...++..|-.||++|.|+|.+|-.+.++.-....++++|.+.+....+.+. .++ +.++++|+..+.
T Consensus 37 A~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-----~p~-~~ii~gda~~l~~~l 110 (194)
T COG3963 37 ARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-----YPG-VNIINGDAFDLRTTL 110 (194)
T ss_pred HHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh-----CCC-ccccccchhhHHHHH
Confidence 34556667888999999999999999999999987788999999999999988764 223 568999987654
Q ss_pred -ccCCCCccEEEEcCCCCCC
Q 012783 399 -DNSTVKCDKVLLDAPCSGL 417 (456)
Q Consensus 399 -~~~~~~fD~VllDaPCSg~ 417 (456)
......||.|++-.|--..
T Consensus 111 ~e~~gq~~D~viS~lPll~~ 130 (194)
T COG3963 111 GEHKGQFFDSVISGLPLLNF 130 (194)
T ss_pred hhcCCCeeeeEEeccccccC
Confidence 2223468999986665433
No 218
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.44 E-value=0.00031 Score=64.72 Aligned_cols=77 Identities=23% Similarity=0.376 Sum_probs=55.3
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEec-cccccc-------ccCC
Q 012783 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTFA-------DNST 402 (456)
Q Consensus 331 ~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~-Da~~~~-------~~~~ 402 (456)
..|+++|||+||+||.++...-++.+|+|.|.++|+-. -...++ +.++.+ |.+... ....
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh-----------~~p~~G-a~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH-----------IEPPEG-ATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee-----------ccCCCC-cccccccccCCHHHHHHHHHhCCC
Confidence 35799999999999999999999999999999999832 122333 445555 654321 1123
Q ss_pred CCccEEEEcCCCCCCcc
Q 012783 403 VKCDKVLLDAPCSGLGV 419 (456)
Q Consensus 403 ~~fD~VllDaPCSg~G~ 419 (456)
.++|+||.|--=-.+|+
T Consensus 135 r~VdvVlSDMapnaTGv 151 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGV 151 (232)
T ss_pred CcccEEEeccCCCCcCc
Confidence 57899999965556666
No 219
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.43 E-value=0.00039 Score=67.86 Aligned_cols=87 Identities=14% Similarity=0.198 Sum_probs=66.5
Q ss_pred HHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCC---CceEEEEecccccccccCC
Q 012783 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV---NSVIRTIHADLRTFADNST 402 (456)
Q Consensus 326 ~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~---~~~V~~~~~Da~~~~~~~~ 402 (456)
+..+.+ ...+||=+|.|.|+.+..+... ++..+|++||+++..++.+++.+..... +.+++++.+|+..+.....
T Consensus 70 ~~~~~~-~p~~VLiiGgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~ 147 (246)
T PF01564_consen 70 PLLLHP-NPKRVLIIGGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQ 147 (246)
T ss_dssp HHHHSS-ST-EEEEEESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSS
T ss_pred HhhcCC-CcCceEEEcCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhcc
Confidence 333444 5789999999999999888765 3357899999999999999998765432 2468999999998877665
Q ss_pred C-CccEEEEcCCC
Q 012783 403 V-KCDKVLLDAPC 414 (456)
Q Consensus 403 ~-~fD~VllDaPC 414 (456)
+ +||+|++|++=
T Consensus 148 ~~~yDvIi~D~~d 160 (246)
T PF01564_consen 148 EEKYDVIIVDLTD 160 (246)
T ss_dssp ST-EEEEEEESSS
T ss_pred CCcccEEEEeCCC
Confidence 6 89999999874
No 220
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.00056 Score=63.88 Aligned_cols=80 Identities=21% Similarity=0.274 Sum_probs=65.9
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc--CCCCccE
Q 012783 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDK 407 (456)
Q Consensus 330 ~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~--~~~~fD~ 407 (456)
.+.+|++||=+||++|....|++...+ .|.|+|||.++.....+-..+++- +| +..+.+||+..... .-+.+|+
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R--~N-i~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR--PN-IIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC--CC-ceeeecccCCcHHhhhhcccccE
Confidence 367899999999999999999999987 899999999999998888877752 33 77899999764332 1357899
Q ss_pred EEEcCC
Q 012783 408 VLLDAP 413 (456)
Q Consensus 408 VllDaP 413 (456)
|+.|+-
T Consensus 149 iy~DVA 154 (231)
T COG1889 149 IYQDVA 154 (231)
T ss_pred EEEecC
Confidence 999964
No 221
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.35 E-value=0.00069 Score=67.56 Aligned_cols=75 Identities=16% Similarity=0.272 Sum_probs=63.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEcC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllDa 412 (456)
.|..|||+|||+|..+...|+. +..+|+|+|.+ +|.+.++...+.+.+.++|+++.|-..+.. .+++.|+|+..|
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdie--LPEk~DviISEP 251 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIE--LPEKVDVIISEP 251 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh--CcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcccccc--CchhccEEEecc
Confidence 4789999999999999988876 57899999986 578888888888889889999999887653 357899998876
No 222
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.35 E-value=0.001 Score=64.07 Aligned_cols=77 Identities=14% Similarity=0.024 Sum_probs=57.3
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHH------------HHcCCCceEEEEecccccc
Q 012783 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA------------KLHQVNSVIRTIHADLRTF 397 (456)
Q Consensus 330 ~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~------------~r~g~~~~V~~~~~Da~~~ 397 (456)
.+.++.+||+.+||.|.-..++|++ .-.|+|+|+|+..++.+.+.. .+... ..|++.++|+..+
T Consensus 40 ~~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~-~~i~~~~gD~f~l 115 (226)
T PRK13256 40 NINDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKG-DDIEIYVADIFNL 115 (226)
T ss_pred CCCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceecc-CceEEEEccCcCC
Confidence 3446789999999999999999986 467999999999999875521 11111 2389999999887
Q ss_pred cc--cCCCCccEEEE
Q 012783 398 AD--NSTVKCDKVLL 410 (456)
Q Consensus 398 ~~--~~~~~fD~Vll 410 (456)
.. ...+.||.|.-
T Consensus 116 ~~~~~~~~~fD~VyD 130 (226)
T PRK13256 116 PKIANNLPVFDIWYD 130 (226)
T ss_pred CccccccCCcCeeee
Confidence 53 22357888654
No 223
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.33 E-value=0.00042 Score=66.65 Aligned_cols=108 Identities=19% Similarity=0.192 Sum_probs=61.0
Q ss_pred cccccccccccchHHHHHHHhc-CCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCce
Q 012783 308 GLLKEGLCAVQDESAGLVVAVV-DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 386 (456)
Q Consensus 308 ~~~~~G~~~vQd~ss~lv~~~l-~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~ 386 (456)
..|.||++.....-.......- .--.|.+||=+| -+..+...+.+.+....|+.+|+++..++.+++.+++.|++
T Consensus 18 ~~~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~lG--DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-- 93 (243)
T PF01861_consen 18 VELDQGYATPETTLRRAALMAERGDLEGKRILFLG--DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-- 93 (243)
T ss_dssp GGGT---B-HHHHHHHHHHHHHTT-STT-EEEEES---TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----
T ss_pred cccccccccHHHHHHHHHHHHhcCcccCCEEEEEc--CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--
Confidence 4467777777654433222111 113588897655 55555544445566689999999999999999999999997
Q ss_pred EEEEecccccc-cccCCCCccEEEEcCCCCCCcc
Q 012783 387 IRTIHADLRTF-ADNSTVKCDKVLLDAPCSGLGV 419 (456)
Q Consensus 387 V~~~~~Da~~~-~~~~~~~fD~VllDaPCSg~G~ 419 (456)
|+.++.|.+.. |....++||.++.|||.+-.|+
T Consensus 94 i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT~~G~ 127 (243)
T PF01861_consen 94 IEAVHYDLRDPLPEELRGKFDVFFTDPPYTPEGL 127 (243)
T ss_dssp EEEE---TTS---TTTSS-BSEEEE---SSHHHH
T ss_pred eEEEEecccccCCHHHhcCCCEEEeCCCCCHHHH
Confidence 89999999864 4445689999999999997764
No 224
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.32 E-value=0.00086 Score=66.61 Aligned_cols=90 Identities=14% Similarity=0.208 Sum_probs=73.5
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcC--C-CceEEEEecccccc
Q 012783 321 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ--V-NSVIRTIHADLRTF 397 (456)
Q Consensus 321 ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g--~-~~~V~~~~~Da~~~ 397 (456)
-...+.....++| .+||=+|-|.|+.+-.++... +-.+++.||+++.-++.+++.+.... . +.+++++.+|+..+
T Consensus 65 ml~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~ 142 (282)
T COG0421 65 MLAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF 142 (282)
T ss_pred HHHhchhhhCCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH
Confidence 3344555566777 699999999999999998874 36799999999999999999876543 2 35799999999998
Q ss_pred cccCCCCccEEEEcC
Q 012783 398 ADNSTVKCDKVLLDA 412 (456)
Q Consensus 398 ~~~~~~~fD~VllDa 412 (456)
......+||+|++|.
T Consensus 143 v~~~~~~fDvIi~D~ 157 (282)
T COG0421 143 LRDCEEKFDVIIVDS 157 (282)
T ss_pred HHhCCCcCCEEEEcC
Confidence 876666899999994
No 225
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.32 E-value=0.0007 Score=62.40 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=50.5
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcC--CCceEEEEeccccc-c--cccCCCCc
Q 012783 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ--VNSVIRTIHADLRT-F--ADNSTVKC 405 (456)
Q Consensus 331 ~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g--~~~~V~~~~~Da~~-~--~~~~~~~f 405 (456)
...+.+||++|||+|--++.++... +...|++-|.++ -++.++.|++.++ ..+.+.+...|... . ......+|
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 3468899999999998888888763 467999999999 9999999999987 45557777766533 1 11123579
Q ss_pred cEEEE
Q 012783 406 DKVLL 410 (456)
Q Consensus 406 D~Vll 410 (456)
|.||.
T Consensus 121 D~Ila 125 (173)
T PF10294_consen 121 DVILA 125 (173)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 99886
No 226
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.28 E-value=8.6e-05 Score=62.32 Aligned_cols=81 Identities=23% Similarity=0.276 Sum_probs=29.8
Q ss_pred EEEcCCCchHHHHHHHHcCCCc--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccC-CCCccEEEEcCCC
Q 012783 338 VDCCAAPGGKTLYMASCLSGQG--LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLLDAPC 414 (456)
Q Consensus 338 LDlcAGpGgkt~~la~~~~~~g--~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~-~~~fD~VllDaPC 414 (456)
|++|++.|..|+.+++.+.+.+ +++++|..+. .+..++.+++.++.++++++.+|..+..... .++||.|++|++-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH 79 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC
Confidence 6889999999999999877655 8999999997 5555666666788777999999987653333 3689999999986
Q ss_pred CCCcc
Q 012783 415 SGLGV 419 (456)
Q Consensus 415 Sg~G~ 419 (456)
+..++
T Consensus 80 ~~~~~ 84 (106)
T PF13578_consen 80 SYEAV 84 (106)
T ss_dssp -HHHH
T ss_pred CHHHH
Confidence 65444
No 227
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.16 E-value=0.0014 Score=65.32 Aligned_cols=84 Identities=14% Similarity=0.063 Sum_probs=52.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHc-CCCceEEEEecccc-c-c--cccCCCCccEE
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH-QVNSVIRTIHADLR-T-F--ADNSTVKCDKV 408 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~-g~~~~V~~~~~Da~-~-~--~~~~~~~fD~V 408 (456)
.-++||+|+|.-.+=-.|+..+. .-+++|.|+++..++.+++|++++ ++.++|+++...-. . + .....+.||..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 45799999999887555555544 579999999999999999999999 99988888765321 1 1 11123589999
Q ss_pred EEcCCCCCCc
Q 012783 409 LLDAPCSGLG 418 (456)
Q Consensus 409 llDaPCSg~G 418 (456)
+|+||-..+.
T Consensus 182 mCNPPFy~s~ 191 (299)
T PF05971_consen 182 MCNPPFYSSQ 191 (299)
T ss_dssp EE-----SS-
T ss_pred ecCCccccCh
Confidence 9999986553
No 228
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.15 E-value=0.0017 Score=57.64 Aligned_cols=63 Identities=21% Similarity=0.190 Sum_probs=51.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHc---CCCceEEEEeCCHHHHHHHHHHHHHcC--CCceEEEEeccc
Q 012783 332 QPGQSIVDCCAAPGGKTLYMASCL---SGQGLVYAIDINKGRLRILNETAKLHQ--VNSVIRTIHADL 394 (456)
Q Consensus 332 ~~g~~VLDlcAGpGgkt~~la~~~---~~~g~V~AvDis~~rl~~l~~n~~r~g--~~~~V~~~~~Da 394 (456)
.+...|+|+|||-|..+..++.++ ...-.|+++|.++..++.+.+..++.+ ....+.+..++.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 91 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDI 91 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccch
Confidence 678899999999999999999844 245799999999999999999999888 433355555544
No 229
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.12 E-value=0.0017 Score=69.91 Aligned_cols=80 Identities=9% Similarity=0.082 Sum_probs=66.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccC-CCCccEEEEc
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLLD 411 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~-~~~fD~VllD 411 (456)
.+..+||+|||.|..++++|... ++..++|+|++...+..+...+++.|+.| +.+++.|+..+.... +.++|.|.+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcCcccccEEEEE
Confidence 46789999999999999999985 56789999999999999999999999988 778888886543322 3568888886
Q ss_pred CCC
Q 012783 412 APC 414 (456)
Q Consensus 412 aPC 414 (456)
=|+
T Consensus 425 FPD 427 (506)
T PRK01544 425 FPD 427 (506)
T ss_pred CCC
Confidence 654
No 230
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.12 E-value=0.00054 Score=63.70 Aligned_cols=70 Identities=29% Similarity=0.265 Sum_probs=59.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
.|.+|||+|+|+|--++..+.. +...|++.|+.+.....++-|++.+|+. |.++..|... .+..||+||+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g----~~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG----SPPAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC----CCcceeEEEe
Confidence 5899999999999887766654 5679999999999999999999999985 7888888753 2368999998
No 231
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.08 E-value=0.0013 Score=63.09 Aligned_cols=89 Identities=17% Similarity=0.126 Sum_probs=62.3
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHH------cC-----CCceEEEEecccccc
Q 012783 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL------HQ-----VNSVIRTIHADLRTF 397 (456)
Q Consensus 329 l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r------~g-----~~~~V~~~~~Da~~~ 397 (456)
+...++.+||+-|||.|.-...+|++ .-.|+++|+++..++.+.+.... .+ -...|++.++|...+
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 45678889999999999999999986 46999999999999987432111 00 012478999999988
Q ss_pred cccCCCCccEEEEcCCCCCCcccccCCC
Q 012783 398 ADNSTVKCDKVLLDAPCSGLGVLSKTCV 425 (456)
Q Consensus 398 ~~~~~~~fD~VllDaPCSg~G~irr~p~ 425 (456)
.....++||.|+= |+.+-.| +|+
T Consensus 110 ~~~~~g~fD~iyD---r~~l~Al--pp~ 132 (218)
T PF05724_consen 110 PPEDVGKFDLIYD---RTFLCAL--PPE 132 (218)
T ss_dssp GGSCHHSEEEEEE---CSSTTTS---GG
T ss_pred ChhhcCCceEEEE---ecccccC--CHH
Confidence 7655568999864 4444443 455
No 232
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.03 E-value=0.0013 Score=61.79 Aligned_cols=89 Identities=16% Similarity=0.147 Sum_probs=66.6
Q ss_pred hcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccE
Q 012783 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 407 (456)
Q Consensus 328 ~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~ 407 (456)
++.......||++|||||..--..- +.+..+|+++|.++++-+.+.+.++.....+...++.+|+.+++...++++|.
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~--~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~Dt 148 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYP--WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDT 148 (252)
T ss_pred HhcccCccceEEecccCCCCccccc--CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeee
Confidence 3444445678999999997533221 12567999999999999999999888765553349999999988666789999
Q ss_pred EEEc-CCCCCCc
Q 012783 408 VLLD-APCSGLG 418 (456)
Q Consensus 408 VllD-aPCSg~G 418 (456)
|++- +=||-.-
T Consensus 149 VV~TlvLCSve~ 160 (252)
T KOG4300|consen 149 VVCTLVLCSVED 160 (252)
T ss_pred EEEEEEEeccCC
Confidence 8874 5677554
No 233
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.02 E-value=0.0012 Score=62.68 Aligned_cols=88 Identities=19% Similarity=0.246 Sum_probs=60.1
Q ss_pred CeEEEEcCCCchHHHHHHHHcCC----Cc----eEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccc-------c
Q 012783 335 QSIVDCCAAPGGKTLYMASCLSG----QG----LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-------D 399 (456)
Q Consensus 335 ~~VLDlcAGpGgkt~~la~~~~~----~g----~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~-------~ 399 (456)
.+|+|+||+||+++..+++.+.. .+ .|+|||+.+- ..++. |..+++|.+... .
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~G-V~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEG-VIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCc-eEEeecccCCHhHHHHHHHH
Confidence 68999999999999999988754 22 3999999643 23455 667889987532 1
Q ss_pred cCCCCccEEEEcCCCCCCcccccCCCccccccccchhhhhhchHh-HHHHHHHhh
Q 012783 400 NSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFL-MQHLCETKY 453 (456)
Q Consensus 400 ~~~~~fD~VllDaPCSg~G~irr~p~~~~~wr~~~~~~~~~~~~~-~~~l~~~~~ 453 (456)
...++.|+|+||. . ||+ ...|...+. |..|..+|.
T Consensus 111 fggekAdlVvcDG------A----PDv---------TGlHd~DEy~Q~qLllaAl 146 (294)
T KOG1099|consen 111 FGGEKADLVVCDG------A----PDV---------TGLHDLDEYVQAQLLLAAL 146 (294)
T ss_pred hCCCCccEEEeCC------C----CCc---------cccccHHHHHHHHHHHHHH
Confidence 2235889999983 2 565 455655553 455555554
No 234
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.98 E-value=0.0032 Score=59.76 Aligned_cols=76 Identities=20% Similarity=0.262 Sum_probs=56.5
Q ss_pred EEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEcCCCCC
Q 012783 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSG 416 (456)
Q Consensus 337 VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllDaPCSg 416 (456)
|.|+||-=|..+..+.+. +...+++|+|+++.-++.+++++++.|+.++|.+..+|+....... +..|.|++ .|
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~-e~~d~ivI----AG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPG-EDVDTIVI----AG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GG-G---EEEE----EE
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCC-CCCCEEEE----ec
Confidence 689999999999999986 3345799999999999999999999999999999999986543221 23687777 35
Q ss_pred Cc
Q 012783 417 LG 418 (456)
Q Consensus 417 ~G 418 (456)
.|
T Consensus 75 MG 76 (205)
T PF04816_consen 75 MG 76 (205)
T ss_dssp E-
T ss_pred CC
Confidence 65
No 235
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.89 E-value=0.00098 Score=63.90 Aligned_cols=118 Identities=14% Similarity=0.142 Sum_probs=66.6
Q ss_pred HHhcCCCCCC-eEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCC
Q 012783 326 VAVVDPQPGQ-SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404 (456)
Q Consensus 326 ~~~l~~~~g~-~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~ 404 (456)
-......++. .++|+|||+|--+..+|++. -+|+|+|+|+.+|+.+++.-...-+.-.......+...+... +++
T Consensus 25 ~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~-e~S 100 (261)
T KOG3010|consen 25 KKIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGG-EES 100 (261)
T ss_pred HHHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCC-Ccc
Confidence 3344445555 89999999995566666663 479999999999998877533222211122333333333322 478
Q ss_pred ccEEEEcCCCC-----------CCcccccCCCcccccccc-chhhhhhchHhHHHH
Q 012783 405 CDKVLLDAPCS-----------GLGVLSKTCVGIGDWRIW-KSLRYCKTSFLMQHL 448 (456)
Q Consensus 405 fD~VllDaPCS-----------g~G~irr~p~~~~~wr~~-~~~~~~~~~~~~~~l 448 (456)
+|+|++ |-|- ..-++|++-..+.-|-.. ..+-+.+....|..+
T Consensus 101 VDlI~~-Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~ 155 (261)
T KOG3010|consen 101 VDLITA-AQAVHWFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRL 155 (261)
T ss_pred eeeehh-hhhHHhhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHH
Confidence 999876 3331 112444444345555555 444444444444433
No 236
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.89 E-value=0.0017 Score=65.02 Aligned_cols=77 Identities=19% Similarity=0.398 Sum_probs=56.6
Q ss_pred eEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCC-CccEEEEcCCC
Q 012783 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV-KCDKVLLDAPC 414 (456)
Q Consensus 336 ~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~-~fD~VllDaPC 414 (456)
+|+|+|||.||.++-+-+. +--.|.|+|+++..++..+.|.. ....+|...+....-. .+|+++.=+||
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~~~D~l~ggpPC 71 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPKDVDLLIGGPPC 71 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHHT-SEEEEE---
T ss_pred cEEEEccCccHHHHHHHhc--CcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccccceEEEeccCC
Confidence 6899999999999888664 23478999999999999999865 3577888776532212 59999999999
Q ss_pred CCCccccc
Q 012783 415 SGLGVLSK 422 (456)
Q Consensus 415 Sg~G~irr 422 (456)
.+.-..++
T Consensus 72 Q~fS~ag~ 79 (335)
T PF00145_consen 72 QGFSIAGK 79 (335)
T ss_dssp TTTSTTST
T ss_pred ceEecccc
Confidence 98877764
No 237
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.87 E-value=0.002 Score=65.36 Aligned_cols=77 Identities=17% Similarity=0.204 Sum_probs=65.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEcC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllDa 412 (456)
...|+|.-+|+|--++-+|...+.. +|+.+|+|++..+.+++|++.+...+ ...++.|+..+.......||.|=+||
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~~~~~fd~IDiDP 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLHELHRAFDVIDIDP 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHHHHhcCCCccEEecCC
Confidence 6899999999999999999887654 89999999999999999999984444 45667999877665557899999987
No 238
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.84 E-value=0.0039 Score=63.49 Aligned_cols=76 Identities=22% Similarity=0.269 Sum_probs=49.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcC---------CCceEEEEeccccccc--c--
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ---------VNSVIRTIHADLRTFA--D-- 399 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g---------~~~~V~~~~~Da~~~~--~-- 399 (456)
++.+|||||||-||-..-.... +-+.++++|++..-++.++++.+.++ ..-...++.+|...-. .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 7899999999999977766553 56899999999999999999984322 1112457777765311 0
Q ss_pred -cCCCCccEEEE
Q 012783 400 -NSTVKCDKVLL 410 (456)
Q Consensus 400 -~~~~~fD~Vll 410 (456)
....+||+|=|
T Consensus 140 ~~~~~~FDvVSc 151 (331)
T PF03291_consen 140 PPRSRKFDVVSC 151 (331)
T ss_dssp SSTTS-EEEEEE
T ss_pred cccCCCcceeeh
Confidence 11247887755
No 239
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.73 E-value=0.0026 Score=60.97 Aligned_cols=84 Identities=24% Similarity=0.279 Sum_probs=64.5
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccC--CCCcc
Q 012783 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVKCD 406 (456)
Q Consensus 329 l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~--~~~fD 406 (456)
+.++||.+||=+||+.|..-.|++..+++.|.|+|||.+..-=+.+...+++- +| |..+..|++...+.. -.-+|
T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tN-iiPIiEDArhP~KYRmlVgmVD 228 (317)
T KOG1596|consen 152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TN-IIPIIEDARHPAKYRMLVGMVD 228 (317)
T ss_pred eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CC-ceeeeccCCCchheeeeeeeEE
Confidence 34789999999999999999999999999999999999987666665555432 34 667888987643321 23568
Q ss_pred EEEEcCCCC
Q 012783 407 KVLLDAPCS 415 (456)
Q Consensus 407 ~VllDaPCS 415 (456)
.||.|++-+
T Consensus 229 vIFaDvaqp 237 (317)
T KOG1596|consen 229 VIFADVAQP 237 (317)
T ss_pred EEeccCCCc
Confidence 888887754
No 240
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.66 E-value=0.011 Score=58.53 Aligned_cols=88 Identities=10% Similarity=-0.043 Sum_probs=68.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccC--CCCccEE
Q 012783 332 QPGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVKCDKV 408 (456)
Q Consensus 332 ~~g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~--~~~fD~V 408 (456)
...-+|||+|||+|---+-+.+..+. ...|.-.|.++.-++..++.++..|+.+.+++.++|+....... ....+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 34568999999999998888777553 36899999999999999999999999997899999998753321 2356887
Q ss_pred EEcCCCCCCcccccCCC
Q 012783 409 LLDAPCSGLGVLSKTCV 425 (456)
Q Consensus 409 llDaPCSg~G~irr~p~ 425 (456)
++ +|++---||
T Consensus 214 iV------sGL~ElF~D 224 (311)
T PF12147_consen 214 IV------SGLYELFPD 224 (311)
T ss_pred EE------ecchhhCCc
Confidence 77 455544444
No 241
>PHA01634 hypothetical protein
Probab=96.64 E-value=0.0084 Score=52.11 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=55.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEc
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllD 411 (456)
.+.+|+|+||+.|..++..+-. +...|+|+|.+++..+..++|++-+.+-+... ... +++.. -+.||...+|
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v-~~~---eW~~~-Y~~~Di~~iD 99 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEEVCAYFNICDKAV-MKG---EWNGE-YEDVDIFVMD 99 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHHHhhhheeeecee-ecc---ccccc-CCCcceEEEE
Confidence 4889999999999999998764 67899999999999999999998775433211 111 34332 3689999998
No 242
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.55 E-value=0.00082 Score=66.18 Aligned_cols=75 Identities=28% Similarity=0.353 Sum_probs=61.9
Q ss_pred CCCeEEEEcCCCchHHH-HHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEc
Q 012783 333 PGQSIVDCCAAPGGKTL-YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~-~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllD 411 (456)
.|+.|.||.||-|++|+ .+... +...|+|+|.++..++.++.+++.+++..+..++.+|-+.... ....|+|.+-
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a--gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~--~~~AdrVnLG 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA--GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP--RLRADRVNLG 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc--CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc--cccchheeec
Confidence 46999999999999999 55443 5679999999999999999999999988877788888776432 3577888773
No 243
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.52 E-value=0.0055 Score=61.95 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=59.7
Q ss_pred EEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEcCCCCC
Q 012783 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSG 416 (456)
Q Consensus 337 VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllDaPCSg 416 (456)
|+|++||.||.+.-+-+. +--.|.|+|+++..++..+.|.. + .++.+|...+.......+|+++.-+||.+
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~~~~~dvl~gg~PCq~ 71 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSDIPDFDILLGGFPCQP 71 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhhCCCcCEEEecCCCcc
Confidence 689999999999887653 33467889999999999988853 2 23567887765322246899999999998
Q ss_pred CcccccCC
Q 012783 417 LGVLSKTC 424 (456)
Q Consensus 417 ~G~irr~p 424 (456)
.-..+++.
T Consensus 72 fS~ag~~~ 79 (315)
T TIGR00675 72 FSIAGKRK 79 (315)
T ss_pred cchhcccC
Confidence 87766544
No 244
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.52 E-value=0.008 Score=58.01 Aligned_cols=74 Identities=16% Similarity=0.182 Sum_probs=56.4
Q ss_pred HHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCC
Q 012783 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403 (456)
Q Consensus 324 lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~ 403 (456)
.+....+..+..+|+|+|+|.|..+..+++.. +..+++.+|. +..++.+++ .++|+++.+|... ..+.
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~---~~P~ 158 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFD---PLPV 158 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTT---CCSS
T ss_pred hhhccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-------ccccccccccHHh---hhcc
Confidence 44555667777899999999999999999986 5689999999 777777766 4569999999872 2334
Q ss_pred CccEEEE
Q 012783 404 KCDKVLL 410 (456)
Q Consensus 404 ~fD~Vll 410 (456)
+|+|++
T Consensus 159 -~D~~~l 164 (241)
T PF00891_consen 159 -ADVYLL 164 (241)
T ss_dssp -ESEEEE
T ss_pred -ccceee
Confidence 999998
No 245
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.37 E-value=0.0076 Score=58.72 Aligned_cols=41 Identities=24% Similarity=0.223 Sum_probs=35.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 376 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~ 376 (456)
...++||+|||-|+.|..++... .+|+|.|.|..|...+++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~ 134 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSK 134 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHh
Confidence 45789999999999999999875 469999999998766554
No 246
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.35 E-value=0.0018 Score=67.72 Aligned_cols=83 Identities=20% Similarity=0.284 Sum_probs=72.8
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccC---CCCccE
Q 012783 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---TVKCDK 407 (456)
Q Consensus 331 ~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~---~~~fD~ 407 (456)
..++-+|||.-+|+|--++..|..+++-+.|+|+|.++..+...++|++.+++.+.|+..+.|+..+.-.. ...||+
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccce
Confidence 34577999999999999999999999999999999999999999999999999999999999997654322 268999
Q ss_pred EEEcCC
Q 012783 408 VLLDAP 413 (456)
Q Consensus 408 VllDaP 413 (456)
|=+||=
T Consensus 187 IDLDPy 192 (525)
T KOG1253|consen 187 IDLDPY 192 (525)
T ss_pred EecCCC
Confidence 999973
No 247
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.33 E-value=0.0013 Score=62.62 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=49.5
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc-cCCCCccE
Q 012783 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDK 407 (456)
Q Consensus 329 l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~-~~~~~fD~ 407 (456)
++..+-.++||+|||+|-.+-.+-.+ ..+++++|+|++|++.+.+. |+=+ +..++|+..|.. ...++||+
T Consensus 121 ~~~g~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~~~er~DL 191 (287)
T COG4976 121 ADLGPFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDLTQERFDL 191 (287)
T ss_pred ccCCccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhccCCcccc
Confidence 34445689999999999888777665 35799999999999988764 2211 244556554432 33467776
Q ss_pred EE
Q 012783 408 VL 409 (456)
Q Consensus 408 Vl 409 (456)
|.
T Consensus 192 i~ 193 (287)
T COG4976 192 IV 193 (287)
T ss_pred hh
Confidence 64
No 248
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.15 E-value=0.02 Score=54.41 Aligned_cols=92 Identities=15% Similarity=0.120 Sum_probs=56.8
Q ss_pred HHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHH-------HcCCC-ceEEEEeccccc
Q 012783 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK-------LHQVN-SVIRTIHADLRT 396 (456)
Q Consensus 325 v~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~-------r~g~~-~~V~~~~~Da~~ 396 (456)
+...+++.+++..+|+|||.|...+++|... +-.+.+++|+.+...+.++...+ .+|.. ..+.+.++|...
T Consensus 34 il~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~ 112 (205)
T PF08123_consen 34 ILDELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLD 112 (205)
T ss_dssp HHHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTT
T ss_pred HHHHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccc
Confidence 3456788999999999999999988888664 45679999999998877765443 34442 357888999765
Q ss_pred cccc--CCCCccEEEEcCCCCCC
Q 012783 397 FADN--STVKCDKVLLDAPCSGL 417 (456)
Q Consensus 397 ~~~~--~~~~fD~VllDaPCSg~ 417 (456)
.+.. .-...|+|+++.=|.+.
T Consensus 113 ~~~~~~~~s~AdvVf~Nn~~F~~ 135 (205)
T PF08123_consen 113 PDFVKDIWSDADVVFVNNTCFDP 135 (205)
T ss_dssp HHHHHHHGHC-SEEEE--TTT-H
T ss_pred cHhHhhhhcCCCEEEEeccccCH
Confidence 3211 11346999999888653
No 249
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=96.06 E-value=0.0023 Score=65.82 Aligned_cols=66 Identities=29% Similarity=0.397 Sum_probs=58.8
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCce-EEEEecccccccc
Q 012783 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIHADLRTFAD 399 (456)
Q Consensus 331 ~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~-V~~~~~Da~~~~~ 399 (456)
.++|+.|-|+|||-|-.++.++.. ..+|+|+|.+++.++.++.|++...+... |++++.|+..+..
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 467999999999999999988875 48999999999999999999998888765 8999999987764
No 250
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=96.02 E-value=0.0096 Score=57.26 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=42.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHH
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL 380 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r 380 (456)
.+..+||+||-.|..|++||...+ ...|+++||++..++.|+++++.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccc
Confidence 467899999999999999999976 46799999999999999999864
No 251
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.95 E-value=0.015 Score=55.91 Aligned_cols=76 Identities=25% Similarity=0.357 Sum_probs=50.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc-CCCCccEEEEc
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLD 411 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~-~~~~fD~VllD 411 (456)
+|..|||+||.+||+|-.+.+. +..+|+|+|....-+.- .++ . -+..+..-..+++.+... ..+..|.|++|
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~---kLR-~-d~rV~~~E~tN~r~l~~~~~~~~~d~~v~D 151 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHW---KLR-N-DPRVIVLERTNVRYLTPEDFTEKPDLIVID 151 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCH---hHh-c-CCcEEEEecCChhhCCHHHcccCCCeEEEE
Confidence 5899999999999999999885 57799999998754431 111 1 112233344455544322 23467899999
Q ss_pred CCCC
Q 012783 412 APCS 415 (456)
Q Consensus 412 aPCS 415 (456)
+---
T Consensus 152 vSFI 155 (245)
T COG1189 152 VSFI 155 (245)
T ss_pred eehh
Confidence 7543
No 252
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=95.92 E-value=0.032 Score=52.72 Aligned_cols=76 Identities=13% Similarity=0.141 Sum_probs=60.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc--c-----CCCCcc
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD--N-----STVKCD 406 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~--~-----~~~~fD 406 (456)
+.+||+++||+|-.+.++|..++ .-+-.-.|.+...+..+...+...|++|....+.-|+....- . ....||
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D 104 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFD 104 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcc
Confidence 34699999999999999999986 578888999999999999999999998866667777764311 1 234788
Q ss_pred EEEE
Q 012783 407 KVLL 410 (456)
Q Consensus 407 ~Vll 410 (456)
.|++
T Consensus 105 ~i~~ 108 (204)
T PF06080_consen 105 AIFC 108 (204)
T ss_pred eeee
Confidence 8876
No 253
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=95.90 E-value=0.0059 Score=57.67 Aligned_cols=94 Identities=20% Similarity=0.284 Sum_probs=69.8
Q ss_pred HHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc----
Q 012783 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---- 399 (456)
Q Consensus 324 lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---- 399 (456)
-++.++.|.+|...+||.-|.||.|..+.+.- +..+++|.|.++-.-+.+....+.+-.+ .+..+.+.+..++.
T Consensus 34 evl~~lspv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s~el~~~-~l~a~Lg~Fs~~~~l~~~ 111 (303)
T KOG2782|consen 34 EVLDILSPVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHSDELMHP-TLKAVLGNFSYIKSLIAD 111 (303)
T ss_pred hHHHHcCCCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhhHhhcch-hHHHHHhhhHHHHHHHHH
Confidence 35778899999999999999999999999874 5689999999999888887776543221 23333444333221
Q ss_pred --cCCCCccEEEEcCCCCCCcc
Q 012783 400 --NSTVKCDKVLLDAPCSGLGV 419 (456)
Q Consensus 400 --~~~~~fD~VllDaPCSg~G~ 419 (456)
..+..||.||.|--||+.-+
T Consensus 112 ~gl~~~~vDGiLmDlGcSSMQ~ 133 (303)
T KOG2782|consen 112 TGLLDVGVDGILMDLGCSSMQV 133 (303)
T ss_pred hCCCcCCcceEEeecCcccccc
Confidence 12468999999999998654
No 254
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.86 E-value=0.034 Score=56.46 Aligned_cols=89 Identities=9% Similarity=0.146 Sum_probs=69.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHH--HHcC---C-CceEEEEecccccccccCCCCc
Q 012783 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA--KLHQ---V-NSVIRTIHADLRTFADNSTVKC 405 (456)
Q Consensus 332 ~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~--~r~g---~-~~~V~~~~~Da~~~~~~~~~~f 405 (456)
...++||=+|.|-|--.-++.+. +.-++|+-||.++++++.++++. ...+ . +.+++++..|+.++.......|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 34688999999999877777765 44789999999999999999663 3222 1 2479999999999877666799
Q ss_pred cEEEEcCCCCCCcccc
Q 012783 406 DKVLLDAPCSGLGVLS 421 (456)
Q Consensus 406 D~VllDaPCSg~G~ir 421 (456)
|.|++|-|=-.+-++.
T Consensus 367 D~vIVDl~DP~tps~~ 382 (508)
T COG4262 367 DVVIVDLPDPSTPSIG 382 (508)
T ss_pred cEEEEeCCCCCCcchh
Confidence 9999998865554444
No 255
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=95.78 E-value=0.008 Score=64.39 Aligned_cols=39 Identities=23% Similarity=0.403 Sum_probs=35.1
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHH
Q 012783 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKG 369 (456)
Q Consensus 331 ~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~ 369 (456)
++++..|||+||+|||+....++.|+-.+.|+++|+-+-
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 467899999999999999999999998899999999653
No 256
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.70 E-value=0.021 Score=58.13 Aligned_cols=81 Identities=19% Similarity=0.333 Sum_probs=62.3
Q ss_pred CeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccC-CC-CccEEEEcC
Q 012783 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TV-KCDKVLLDA 412 (456)
Q Consensus 335 ~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~-~~-~fD~VllDa 412 (456)
-+++|+|||.||..+-+... +--.+.|+|+++..++..+.|... ..++..|...+.... .. .+|+|+-=+
T Consensus 4 ~~~idLFsG~GG~~lGf~~a--gf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA--GFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred ceEEeeccCCchHHHHHHhc--CCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCC
Confidence 57999999999999777654 345789999999999999888543 235667776553322 12 789999999
Q ss_pred CCCCCcccccC
Q 012783 413 PCSGLGVLSKT 423 (456)
Q Consensus 413 PCSg~G~irr~ 423 (456)
||-+.-+.+++
T Consensus 76 PCQ~FS~aG~r 86 (328)
T COG0270 76 PCQDFSIAGKR 86 (328)
T ss_pred CCcchhhcCcc
Confidence 99988888776
No 257
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.62 E-value=0.016 Score=56.63 Aligned_cols=104 Identities=15% Similarity=0.180 Sum_probs=72.6
Q ss_pred ccccccccccchHHHHH-HHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceE
Q 012783 309 LLKEGLCAVQDESAGLV-VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI 387 (456)
Q Consensus 309 ~~~~G~~~vQd~ss~lv-~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V 387 (456)
.|.||++...-.-+..+ ..--.--.|..|+=+| --..|...+.+.+-..+|..+||++.-++...+-++.+|+.| +
T Consensus 127 ~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~-i 203 (354)
T COG1568 127 QYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVG--DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN-I 203 (354)
T ss_pred hcccccccccceeeeeeeeccccCcCCCeEEEEc--CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccc-h
Confidence 46677666643332211 1111223577898887 344444444444445689999999999999999999999987 8
Q ss_pred EEEecccccc-cccCCCCccEEEEcCCCC
Q 012783 388 RTIHADLRTF-ADNSTVKCDKVLLDAPCS 415 (456)
Q Consensus 388 ~~~~~Da~~~-~~~~~~~fD~VllDaPCS 415 (456)
..+..|.++. |....++||..+-|||-+
T Consensus 204 e~~~~Dlr~plpe~~~~kFDvfiTDPpeT 232 (354)
T COG1568 204 EAFVFDLRNPLPEDLKRKFDVFITDPPET 232 (354)
T ss_pred hheeehhcccChHHHHhhCCeeecCchhh
Confidence 8899998764 444567999999999976
No 258
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.57 E-value=0.052 Score=53.74 Aligned_cols=80 Identities=16% Similarity=0.059 Sum_probs=49.7
Q ss_pred CCeEEEEcCCCchHHHHHHH-HcCCCceEEEEeCCHHHHHHHHHHHH-HcCCCceEEEEecccccccccCCCCccEEEEc
Q 012783 334 GQSIVDCCAAPGGKTLYMAS-CLSGQGLVYAIDINKGRLRILNETAK-LHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~-~~~~~g~V~AvDis~~rl~~l~~n~~-r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllD 411 (456)
..+|+=+|+||=-.|..+.. .......|+++|+++.+.+.+++-++ ..|+...+.++++|+....... ..||.|++-
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl-~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL-KEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc-ccCCEEEEh
Confidence 35999999999888765544 43445689999999999999999888 6788888999999997765433 589999995
Q ss_pred CCC
Q 012783 412 APC 414 (456)
Q Consensus 412 aPC 414 (456)
+=-
T Consensus 200 alV 202 (276)
T PF03059_consen 200 ALV 202 (276)
T ss_dssp TT-
T ss_pred hhc
Confidence 533
No 259
>PRK10458 DNA cytosine methylase; Provisional
Probab=95.37 E-value=0.068 Score=56.88 Aligned_cols=83 Identities=18% Similarity=0.243 Sum_probs=57.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc-------------
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN------------- 400 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~------------- 400 (456)
.-+++|++||.||.++-+-.. +.-.|.++|+++...+.-+.|... .++ ...+.+|...+...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a--G~~~v~a~Eid~~A~~TY~~N~~~--~p~-~~~~~~DI~~i~~~~~~~~~~~~~~~~ 162 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI--GGQCVFTSEWNKHAVRTYKANWYC--DPA-THRFNEDIRDITLSHKEGVSDEEAAEH 162 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc--CCEEEEEEechHHHHHHHHHHcCC--CCc-cceeccChhhCccccccccchhhhhhh
Confidence 458999999999999887543 334789999999999998888421 111 23445665554210
Q ss_pred ---CCCCccEEEEcCCCCCCcccc
Q 012783 401 ---STVKCDKVLLDAPCSGLGVLS 421 (456)
Q Consensus 401 ---~~~~fD~VllDaPCSg~G~ir 421 (456)
....+|+++--+||-+.-+.+
T Consensus 163 ~~~~~p~~DvL~gGpPCQ~FS~AG 186 (467)
T PRK10458 163 IRQHIPDHDVLLAGFPCQPFSLAG 186 (467)
T ss_pred hhccCCCCCEEEEcCCCCccchhc
Confidence 112589999999998776554
No 260
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=95.36 E-value=0.064 Score=57.78 Aligned_cols=106 Identities=17% Similarity=0.178 Sum_probs=72.6
Q ss_pred cccccccchHHHHHHHhcCCC--CCCeEEEEcCCCchHHHHHHHHcC---CCceEEEEeCCHHHHHHHHHHHHHcCCCc-
Q 012783 312 EGLCAVQDESAGLVVAVVDPQ--PGQSIVDCCAAPGGKTLYMASCLS---GQGLVYAIDINKGRLRILNETAKLHQVNS- 385 (456)
Q Consensus 312 ~G~~~vQd~ss~lv~~~l~~~--~g~~VLDlcAGpGgkt~~la~~~~---~~g~V~AvDis~~rl~~l~~n~~r~g~~~- 385 (456)
.|.++.-..-+.+.+..+.+. |+..|.|+|||+|+.-......+. ....+++.+....+...++.|+.-.|...
T Consensus 194 ~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~ 273 (501)
T TIGR00497 194 GGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYA 273 (501)
T ss_pred CceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcc
Confidence 455665555566677777765 678999999999998765544432 12468999999999999999987666532
Q ss_pred eEEEEeccccccccc-CCCCccEEEEcCCCCCC
Q 012783 386 VIRTIHADLRTFADN-STVKCDKVLLDAPCSGL 417 (456)
Q Consensus 386 ~V~~~~~Da~~~~~~-~~~~fD~VllDaPCSg~ 417 (456)
......+|...-+.. ...+||.|+.+||-+..
T Consensus 274 t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~ 306 (501)
T TIGR00497 274 NFNIINADTLTTKEWENENGFEVVVSNPPYSIS 306 (501)
T ss_pred ccCcccCCcCCCccccccccCCEEeecCCcccc
Confidence 123334554332111 23469999999999864
No 261
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.31 E-value=0.026 Score=53.49 Aligned_cols=58 Identities=16% Similarity=0.218 Sum_probs=40.4
Q ss_pred HHHHHHHhcCC---CCCCeEEEEcCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHH
Q 012783 321 SAGLVVAVVDP---QPGQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETA 378 (456)
Q Consensus 321 ss~lv~~~l~~---~~g~~VLDlcAGpGgkt~~la~~~~~~-g~V~AvDis~~rl~~l~~n~ 378 (456)
+|-+....+.. ..+-++.|-|||.|+..+.+.-+-++. ..|+|.|++++.++.+++|+
T Consensus 36 AsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL 97 (246)
T PF11599_consen 36 ASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNL 97 (246)
T ss_dssp HHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhh
Confidence 44444444333 344689999999999988887654322 47999999999999999997
No 262
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=95.29 E-value=0.046 Score=54.17 Aligned_cols=49 Identities=12% Similarity=0.119 Sum_probs=40.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHc
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH 381 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~ 381 (456)
...+|||+|||||.-+..+.+..+....++++|.|+.+++.++.-++..
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 3468999999999877666666665678999999999999988876654
No 263
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=95.28 E-value=0.053 Score=54.94 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=50.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHcCC---CceEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEeccccc
Q 012783 332 QPGQSIVDCCAAPGGKTLYMASCLSG---QGLVYAIDINKGRLRILNETAKLHQVNS-VIRTIHADLRT 396 (456)
Q Consensus 332 ~~g~~VLDlcAGpGgkt~~la~~~~~---~g~V~AvDis~~rl~~l~~n~~r~g~~~-~V~~~~~Da~~ 396 (456)
.++..|+|+|||.|.||..+.+.+.. ..+-+++|+|.+.++.+.+++....+++ .|..+++|...
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 35779999999999999998887753 2468999999999999999988444443 24558888754
No 264
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=94.94 E-value=0.19 Score=47.75 Aligned_cols=94 Identities=16% Similarity=0.142 Sum_probs=66.2
Q ss_pred cchHHHHHHHhcCCCCCCeEEEEcCCCch--HH--HHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecc
Q 012783 318 QDESAGLVVAVVDPQPGQSIVDCCAAPGG--KT--LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 393 (456)
Q Consensus 318 Qd~ss~lv~~~l~~~~g~~VLDlcAGpGg--kt--~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~D 393 (456)
|..++-++..+..-.....+++.|++-|. .| +.+|.. ...|+++++-.++..+...++.+...|+.+.++|+.+|
T Consensus 26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr-~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~ 104 (218)
T PF07279_consen 26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAAR-QTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGE 104 (218)
T ss_pred CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHH-hcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecC
Confidence 44455555555554556789999776543 23 333333 34689999999999888888999989988778999998
Q ss_pred cc-cccccCCCCccEEEEcCC
Q 012783 394 LR-TFADNSTVKCDKVLLDAP 413 (456)
Q Consensus 394 a~-~~~~~~~~~fD~VllDaP 413 (456)
.. .+.... ...|.+++|.-
T Consensus 105 ~~e~~~~~~-~~iDF~vVDc~ 124 (218)
T PF07279_consen 105 APEEVMPGL-KGIDFVVVDCK 124 (218)
T ss_pred CHHHHHhhc-cCCCEEEEeCC
Confidence 54 344333 57899999953
No 265
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.83 E-value=0.11 Score=49.61 Aligned_cols=76 Identities=14% Similarity=0.138 Sum_probs=63.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
.+.++.|+||==|..+.++... +....++|.|+++.-++.+.+|+++.++..++++..+|...... ....+|.|++
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~-~~d~~d~ivI 91 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE-LEDEIDVIVI 91 (226)
T ss_pred cCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC-ccCCcCEEEE
Confidence 4667999999999999999875 45678999999999999999999999999999999999854332 2236888877
No 266
>PRK00536 speE spermidine synthase; Provisional
Probab=94.65 E-value=0.22 Score=49.01 Aligned_cols=81 Identities=7% Similarity=-0.086 Sum_probs=57.8
Q ss_pred HHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHc--CCC-ceEEEEeccccccccc
Q 012783 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH--QVN-SVIRTIHADLRTFADN 400 (456)
Q Consensus 324 lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~--g~~-~~V~~~~~Da~~~~~~ 400 (456)
-++....+. ..+||=+|.|-||..-.+++. + .+|+-||++++.++.+++.+-.+ +.+ .+++++.. +...
T Consensus 64 Hppl~~h~~-pk~VLIiGGGDGg~~REvLkh--~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~~ 135 (262)
T PRK00536 64 HMGGCTKKE-LKEVLIVDGFDLELAHQLFKY--D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LLDL 135 (262)
T ss_pred HHHHhhCCC-CCeEEEEcCCchHHHHHHHCc--C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhhc
Confidence 344444444 489999999999999999987 2 49999999999999999954432 222 35666541 2222
Q ss_pred CCCCccEEEEcC
Q 012783 401 STVKCDKVLLDA 412 (456)
Q Consensus 401 ~~~~fD~VllDa 412 (456)
..++||+|++|.
T Consensus 136 ~~~~fDVIIvDs 147 (262)
T PRK00536 136 DIKKYDLIICLQ 147 (262)
T ss_pred cCCcCCEEEEcC
Confidence 236899999993
No 267
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=94.16 E-value=0.069 Score=50.85 Aligned_cols=74 Identities=18% Similarity=0.060 Sum_probs=48.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
.-.+.||+|||-|-.|-.+...+ --+|..+|..++.++.+++.+... ......+.+.-..++.+. ..+||+|.+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~-~~~YDlIW~ 128 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPE-EGKYDLIWI 128 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG-----TT-EEEEEE
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCC-CCcEeEEEe
Confidence 35789999999999998775433 468999999999999999875542 123456777777776543 368999976
No 268
>PRK11524 putative methyltransferase; Provisional
Probab=93.99 E-value=0.11 Score=51.72 Aligned_cols=47 Identities=17% Similarity=0.187 Sum_probs=38.4
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHH
Q 012783 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL 380 (456)
Q Consensus 331 ~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r 380 (456)
-.+|+.|||-++|+|..+ .+|..+ +-+-+++|++++-++.++++++.
T Consensus 206 S~~GD~VLDPF~GSGTT~-~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTG-AVAKAS--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHH-HHHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 368999999999998754 455554 45789999999999999999753
No 269
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=93.95 E-value=0.1 Score=54.17 Aligned_cols=85 Identities=14% Similarity=0.136 Sum_probs=61.3
Q ss_pred CeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEE---EEc
Q 012783 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV---LLD 411 (456)
Q Consensus 335 ~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~V---llD 411 (456)
-.|||+|+|+|-.++..+..+ .-.|+|+|.-..|.+.+++-..+.|.++.|++++.-.++.........|++ ++|
T Consensus 68 v~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fd 145 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFD 145 (636)
T ss_pred EEEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhh
Confidence 359999999999998877764 457999999999999999999999999888888765554432211122322 233
Q ss_pred CCCCCCcccc
Q 012783 412 APCSGLGVLS 421 (456)
Q Consensus 412 aPCSg~G~ir 421 (456)
---.|.|.++
T Consensus 146 tEligeGalp 155 (636)
T KOG1501|consen 146 TELIGEGALP 155 (636)
T ss_pred hhhhccccch
Confidence 3444666654
No 270
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=93.73 E-value=0.18 Score=50.65 Aligned_cols=85 Identities=19% Similarity=0.149 Sum_probs=56.8
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCC-----ceEEEEeccccc
Q 012783 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-----SVIRTIHADLRT 396 (456)
Q Consensus 322 s~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~-----~~V~~~~~Da~~ 396 (456)
|+|+-.+. ++++.|+|||||-||-.+-.-.. +-+.++++||.+--++.++++-+.+.-. -.+.++.+|.+.
T Consensus 108 s~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 108 SVLINLYT--KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred HHHHHHHh--ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 45555544 46899999999999987766543 4578999999999888888876533111 126788888653
Q ss_pred c-----cccCCCCccEEEE
Q 012783 397 F-----ADNSTVKCDKVLL 410 (456)
Q Consensus 397 ~-----~~~~~~~fD~Vll 410 (456)
- ......+||+|-|
T Consensus 184 ~~l~d~~e~~dp~fDivSc 202 (389)
T KOG1975|consen 184 ERLMDLLEFKDPRFDIVSC 202 (389)
T ss_pred hHHHHhccCCCCCcceeee
Confidence 1 1111234887755
No 271
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=93.71 E-value=0.074 Score=51.27 Aligned_cols=58 Identities=16% Similarity=0.269 Sum_probs=44.8
Q ss_pred eEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccc
Q 012783 336 SIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395 (456)
Q Consensus 336 ~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~ 395 (456)
+||++|||.|.....+.+-.++ .-.|+|+|.++..++..+++....- .++.....|+.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt 132 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLT 132 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceecc
Confidence 8999999999999988876433 2689999999999999999876443 23444555554
No 272
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=93.19 E-value=0.29 Score=47.66 Aligned_cols=73 Identities=21% Similarity=0.140 Sum_probs=49.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
+..+|+|+|||-=-.++..... .+....+|+||+...++.+..-+..+|... .+...|...-+ .....|+.|+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~--~~~v~Dl~~~~--~~~~~DlaLl 177 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGVPH--DARVRDLLSDP--PKEPADLALL 177 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-CE--EEEEE-TTTSH--TTSEESEEEE
T ss_pred CCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCCCc--ceeEeeeeccC--CCCCcchhhH
Confidence 4689999999998888766543 345699999999999999999999999874 45556654322 1234565554
No 273
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=93.12 E-value=0.58 Score=38.93 Aligned_cols=75 Identities=15% Similarity=0.125 Sum_probs=46.5
Q ss_pred EEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccc--ccccCCCCccEEEEcCC
Q 012783 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT--FADNSTVKCDKVLLDAP 413 (456)
Q Consensus 337 VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~--~~~~~~~~fD~VllDaP 413 (456)
|+|+|||+|..+ .++........++++|++..++...+......+... +.+..+|... ++......||.+.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGL-VDFVVADALGGVLPFEDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCc-eEEEEeccccCCCCCCCCCceeEEeeeee
Confidence 999999999987 555543222388999999999998555443322211 4667777654 22211136888744333
No 274
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.00 E-value=0.2 Score=48.92 Aligned_cols=70 Identities=24% Similarity=0.252 Sum_probs=53.4
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 331 ~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
..+|+.-.|+||.|||.|-++..+ .-.|+|||.-+-+ +++-.. ..|+-+..|...+.+. ..+.|-.+|
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~ma-----~sL~dt---g~v~h~r~DGfk~~P~-r~~idWmVC 276 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGPMA-----QSLMDT---GQVTHLREDGFKFRPT-RSNIDWMVC 276 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc---ceEEEEeccchhh-----hhhhcc---cceeeeeccCcccccC-CCCCceEEe
Confidence 468999999999999999988775 6799999985432 222222 3488889999888652 367899999
Q ss_pred cC
Q 012783 411 DA 412 (456)
Q Consensus 411 Da 412 (456)
|-
T Consensus 277 Dm 278 (358)
T COG2933 277 DM 278 (358)
T ss_pred eh
Confidence 84
No 275
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=93.00 E-value=0.15 Score=46.27 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=37.0
Q ss_pred EEEeCCHHHHHHHHHHHHHcC--CCceEEEEecccccccccCCCCccEEEE
Q 012783 362 YAIDINKGRLRILNETAKLHQ--VNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 362 ~AvDis~~rl~~l~~n~~r~g--~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
+++|+|++|++.++++.+..+ ..++|+++++|+..++. .+++||.|++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~v~~ 50 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF-DDCEFDAVTM 50 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC-CCCCeeEEEe
Confidence 479999999999987765332 22348999999988764 3468999986
No 276
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=92.94 E-value=0.17 Score=47.40 Aligned_cols=43 Identities=23% Similarity=0.318 Sum_probs=31.4
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q 012783 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 376 (456)
Q Consensus 331 ~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~ 376 (456)
-.+|+.|||-+||+|+.+ .+|..+ +-+-+++|++++-++.+++
T Consensus 189 t~~gdiVlDpF~GSGTT~-~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTA-VAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHH-HHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHH-HHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 367999999999999754 455555 3578999999999998764
No 277
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=92.73 E-value=0.31 Score=43.34 Aligned_cols=52 Identities=15% Similarity=0.221 Sum_probs=39.9
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCC-CccEEEEc
Q 012783 360 LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV-KCDKVLLD 411 (456)
Q Consensus 360 ~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~-~fD~VllD 411 (456)
+|+|+||.++.++..+++++..++.++|++++..-..+....+. ++|.|+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN 53 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN 53 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE
Confidence 59999999999999999999999988899998887776654444 78888884
No 278
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.05 E-value=0.61 Score=47.01 Aligned_cols=101 Identities=21% Similarity=0.257 Sum_probs=63.5
Q ss_pred cccccccccchHHH-HHHHhcCCCCCCeEEEEcCCCchH-HHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceE
Q 012783 310 LKEGLCAVQDESAG-LVVAVVDPQPGQSIVDCCAAPGGK-TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI 387 (456)
Q Consensus 310 ~~~G~~~vQd~ss~-lv~~~l~~~~g~~VLDlcAGpGgk-t~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V 387 (456)
|.+|- .+|..|.. .+....++++|++||=+||||=|. |...|+.+ +..+|+.+|+++.|++.+++ +|.+...
T Consensus 146 ~eeGA-l~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~-GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~ 219 (354)
T KOG0024|consen 146 FEEGA-LIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAM-GASDVVITDLVANRLELAKK----FGATVTD 219 (354)
T ss_pred hhhcc-cccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHc-CCCcEEEeecCHHHHHHHHH----hCCeEEe
Confidence 34443 24554433 334456789999999999999665 55555555 57899999999999999876 7876422
Q ss_pred EEEecc-cccc----cccC-CCCccEEEEcCCCCCCcc
Q 012783 388 RTIHAD-LRTF----ADNS-TVKCDKVLLDAPCSGLGV 419 (456)
Q Consensus 388 ~~~~~D-a~~~----~~~~-~~~fD~VllDaPCSg~G~ 419 (456)
..-+.+ ...+ .... ...||..+= |||...
T Consensus 220 ~~~~~~~~~~~~~~v~~~~g~~~~d~~~d---CsG~~~ 254 (354)
T KOG0024|consen 220 PSSHKSSPQELAELVEKALGKKQPDVTFD---CSGAEV 254 (354)
T ss_pred eccccccHHHHHHHHHhhccccCCCeEEE---ccCchH
Confidence 222212 1111 1111 234888775 888764
No 279
>PRK13699 putative methylase; Provisional
Probab=92.02 E-value=0.36 Score=46.49 Aligned_cols=49 Identities=16% Similarity=0.117 Sum_probs=39.1
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 012783 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ 382 (456)
Q Consensus 331 ~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g 382 (456)
..+|+.|||-+||+|+... .|..+ ....+++|++++-.+.+.++++...
T Consensus 161 s~~g~~vlDpf~Gsgtt~~-aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~~ 209 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCV-AALQS--GRRYIGIELLEQYHRAGQQRLAAVQ 209 (227)
T ss_pred CCCCCEEEeCCCCCCHHHH-HHHHc--CCCEEEEecCHHHHHHHHHHHHHHH
Confidence 4689999999999997554 44444 4578999999999999999887643
No 280
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=92.01 E-value=0.16 Score=48.11 Aligned_cols=80 Identities=25% Similarity=0.253 Sum_probs=43.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHc---CCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc-----C--CC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCL---SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-----S--TV 403 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~---~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~-----~--~~ 403 (456)
.+.|+++|.+-||-....|+++ ++.++|+++|++-....... .+......+|+++.||....... . ..
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESHPMSPRITFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--HhhccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence 4799999999999998887644 56799999999655443221 22233445799999998643210 1 13
Q ss_pred CccEEEEcCCCC
Q 012783 404 KCDKVLLDAPCS 415 (456)
Q Consensus 404 ~fD~VllDaPCS 415 (456)
....|+.|+--+
T Consensus 111 ~~vlVilDs~H~ 122 (206)
T PF04989_consen 111 HPVLVILDSSHT 122 (206)
T ss_dssp SSEEEEESS---
T ss_pred CceEEEECCCcc
Confidence 456899998744
No 281
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=91.03 E-value=0.22 Score=49.67 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=50.6
Q ss_pred CeEEEEcCCCchH----HHHHHHHcCC---CceEEEEeCCHHHHHHHHHHH--------------HHc---------C--
Q 012783 335 QSIVDCCAAPGGK----TLYMASCLSG---QGLVYAIDINKGRLRILNETA--------------KLH---------Q-- 382 (456)
Q Consensus 335 ~~VLDlcAGpGgk----t~~la~~~~~---~g~V~AvDis~~rl~~l~~n~--------------~r~---------g-- 382 (456)
-+|+.+||++|-= ++.+.+.++. .-+|+|.|+|...++.+++.. +++ |
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 6999999999963 3334443322 357999999999999998762 000 0
Q ss_pred -----CCceEEEEecccccccccCCCCccEEEE
Q 012783 383 -----VNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 383 -----~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
+.+.|++...|....+....+.||+|+|
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~c 229 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFC 229 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeH
Confidence 2245677777776532222368999998
No 282
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=89.62 E-value=0.47 Score=52.84 Aligned_cols=88 Identities=11% Similarity=0.006 Sum_probs=55.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHc------CC-----CceEEEEeCCHHHHHHHHHHH--------------HH-----cCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCL------SG-----QGLVYAIDINKGRLRILNETA--------------KL-----HQV 383 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~------~~-----~g~V~AvDis~~rl~~l~~n~--------------~r-----~g~ 383 (456)
.=+|+|+|=|+|...+...+.. .+ .-+++++|.++-..+.+.+.. +. .|+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 4689999999999877766544 11 247899997652222222211 11 122
Q ss_pred C------c--eEEEEecccccccccCCCCccEEEEcC--CCCCCcccccCCCccc
Q 012783 384 N------S--VIRTIHADLRTFADNSTVKCDKVLLDA--PCSGLGVLSKTCVGIG 428 (456)
Q Consensus 384 ~------~--~V~~~~~Da~~~~~~~~~~fD~VllDa--PCSg~G~irr~p~~~~ 428 (456)
. + .++++.+|+..........||.|++|+ | .||||.|.
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP-------~~np~~W~ 185 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAP-------AKNPDMWS 185 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCC-------ccChhhcc
Confidence 1 1 355778998775544445799999994 5 47899643
No 283
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=89.59 E-value=0.22 Score=46.86 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=43.4
Q ss_pred CCCeEEEEcCCCchH----HHHHHHHcCC----CceEEEEeCCHHHHHHHHHHH--------------HHc-----C---
Q 012783 333 PGQSIVDCCAAPGGK----TLYMASCLSG----QGLVYAIDINKGRLRILNETA--------------KLH-----Q--- 382 (456)
Q Consensus 333 ~g~~VLDlcAGpGgk----t~~la~~~~~----~g~V~AvDis~~rl~~l~~n~--------------~r~-----g--- 382 (456)
+.-+|+.+||++|-= ++.+.+.... .-+|+|.|+|...++.+++-. +++ |
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 346899999999963 3333442221 248999999999999987642 111 1
Q ss_pred -----CCceEEEEecccccccccCCCCccEEEE
Q 012783 383 -----VNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 383 -----~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
+.+.|++...|... .....+.||+|+|
T Consensus 111 ~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~C 142 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFC 142 (196)
T ss_dssp TE-HHHHTTEEEEE--TT--S------EEEEEE
T ss_pred eEChHHcCceEEEecccCC-CCcccCCccEEEe
Confidence 11347888888776 2223478999998
No 284
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=88.53 E-value=0.76 Score=44.22 Aligned_cols=84 Identities=13% Similarity=0.100 Sum_probs=57.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHc-CCCceEEEEec-cccc-ccc--cCCCCccE
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH-QVNSVIRTIHA-DLRT-FAD--NSTVKCDK 407 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~-g~~~~V~~~~~-Da~~-~~~--~~~~~fD~ 407 (456)
++-++||+|.|.--+--.+...+. .-..++.|+++..+..++.++..+ ++.+.|++... |-.. ++. ...+.||.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 456799999887554444444433 247899999999999999998877 77766665543 2211 111 12468999
Q ss_pred EEEcCCCCCC
Q 012783 408 VLLDAPCSGL 417 (456)
Q Consensus 408 VllDaPCSg~ 417 (456)
++|+||--++
T Consensus 157 tlCNPPFh~s 166 (292)
T COG3129 157 TLCNPPFHDS 166 (292)
T ss_pred EecCCCcchh
Confidence 9999997644
No 285
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=87.96 E-value=1.7 Score=44.32 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=52.9
Q ss_pred cCCCCCCeEEEEcCC-CchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccE
Q 012783 329 VDPQPGQSIVDCCAA-PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 407 (456)
Q Consensus 329 l~~~~g~~VLDlcAG-pGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~ 407 (456)
.+..||++|+=.|+| -|..++++|..|+ .+|+|+|.++++++.+++ +|.+..+... |...... ..+.||.
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~----lGAd~~i~~~--~~~~~~~-~~~~~d~ 232 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKK----LGADHVINSS--DSDALEA-VKEIADA 232 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHH----hCCcEEEEcC--CchhhHH-hHhhCcE
Confidence 567899999998887 4557888888774 899999999999988765 6776422211 3222221 1234999
Q ss_pred EEEcCC
Q 012783 408 VLLDAP 413 (456)
Q Consensus 408 VllDaP 413 (456)
|+.=+|
T Consensus 233 ii~tv~ 238 (339)
T COG1064 233 IIDTVG 238 (339)
T ss_pred EEECCC
Confidence 988766
No 286
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=87.75 E-value=1.1 Score=44.33 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=34.1
Q ss_pred CCeEEEEcCCCch----HHHHHHHHcCC----CceEEEEeCCHHHHHHHHHH
Q 012783 334 GQSIVDCCAAPGG----KTLYMASCLSG----QGLVYAIDINKGRLRILNET 377 (456)
Q Consensus 334 g~~VLDlcAGpGg----kt~~la~~~~~----~g~V~AvDis~~rl~~l~~n 377 (456)
.-+|+-+||++|- .++.+.+.++. .-+|+|.|+|...|+.|+.-
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G 148 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAG 148 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcC
Confidence 4589999999995 55555665542 46899999999999988753
No 287
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=87.07 E-value=1.3 Score=41.91 Aligned_cols=64 Identities=14% Similarity=0.207 Sum_probs=50.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcC-------CCceEEEEecccccccc
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ-------VNSVIRTIHADLRTFAD 399 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g-------~~~~V~~~~~Da~~~~~ 399 (456)
.-.+.|+|||-||....++.+. +..-|.+.||--+-.+..+++++.++ +.| +.+++.++..+..
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~n-i~vlr~namk~lp 131 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPN-ISVLRTNAMKFLP 131 (249)
T ss_pred cceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhcccccccccc-ceeeeccchhhcc
Confidence 3568999999999999999885 56889999998887788888777665 555 6677777765543
No 288
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=85.91 E-value=1.8 Score=38.36 Aligned_cols=43 Identities=26% Similarity=0.296 Sum_probs=29.5
Q ss_pred EEcCCCc--hHHHHHH-HHcCCCceEEEEeCCHHHHHHHHHH--HHHc
Q 012783 339 DCCAAPG--GKTLYMA-SCLSGQGLVYAIDINKGRLRILNET--AKLH 381 (456)
Q Consensus 339 DlcAGpG--gkt~~la-~~~~~~g~V~AvDis~~rl~~l~~n--~~r~ 381 (456)
|+||.-| ..+..+. +...+.++|+++|.++..++.++.+ +...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 8999999 7666664 2456678999999999999999999 5544
No 289
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=85.18 E-value=1.2 Score=47.47 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=58.6
Q ss_pred CeEEEEcCCCchH---HHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 335 QSIVDCCAAPGGK---TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 335 ~~VLDlcAGpGgk---t~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
..|+=+|||.|-. ++.+|+....+-+++|+|.++..+-.++. .+....+++|+++..|.+.+... .++.|+++.
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap-~eq~DI~VS 445 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP-REQADIIVS 445 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc-hhhccchHH
Confidence 3578899999864 66777777777899999999999999877 56667778899999999988643 256777653
No 290
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=83.07 E-value=7.3 Score=35.64 Aligned_cols=78 Identities=15% Similarity=0.127 Sum_probs=47.2
Q ss_pred cCCCchHHHHHHHHcCCCceEEEE--eCCHHHHH---HHHHHHHHcCCCceEEEEecccccccccC---CCCccEEEEcC
Q 012783 341 CAAPGGKTLYMASCLSGQGLVYAI--DINKGRLR---ILNETAKLHQVNSVIRTIHADLRTFADNS---TVKCDKVLLDA 412 (456)
Q Consensus 341 cAGpGgkt~~la~~~~~~g~V~Av--Dis~~rl~---~l~~n~~r~g~~~~V~~~~~Da~~~~~~~---~~~fD~VllDa 412 (456)
|=|--++++.++...+....|+|. |...+-.+ .+.+|++.+.-.+.......|++.+.... ...||+|+.+=
T Consensus 4 GeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFNF 83 (166)
T PF10354_consen 4 GEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFNF 83 (166)
T ss_pred eccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEeC
Confidence 344455677777776544566665 54443332 23456555433232335667888775533 46899999999
Q ss_pred CCCCCc
Q 012783 413 PCSGLG 418 (456)
Q Consensus 413 PCSg~G 418 (456)
|+.|.|
T Consensus 84 PH~G~~ 89 (166)
T PF10354_consen 84 PHVGGG 89 (166)
T ss_pred CCCCCC
Confidence 999833
No 291
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=83.00 E-value=3.3 Score=42.71 Aligned_cols=51 Identities=20% Similarity=0.112 Sum_probs=38.5
Q ss_pred HHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHH
Q 012783 323 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN 375 (456)
Q Consensus 323 ~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~ 375 (456)
-++..+.+-.+-+.|+|+|||+|..+..|+-. .+-.|+|+|-|+...+.++
T Consensus 143 elvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~--y~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 143 ELVSSISDFTGIDQVVDVGAGQGHLSRFLSLG--YGLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred HHHHHHHhhcCCCeeEEcCCCchHHHHHHhhc--cCceEEEeccchHHHHHHH
Confidence 45555556666789999999999999988764 4679999999965444433
No 292
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=82.08 E-value=3.2 Score=39.76 Aligned_cols=70 Identities=14% Similarity=0.194 Sum_probs=54.1
Q ss_pred HHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccc
Q 012783 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397 (456)
Q Consensus 324 lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~ 397 (456)
.++...+.-..+.|..+|-||||.|-.+.+. +..++..||++...+.-++...+.. +.+..++++|+..+
T Consensus 41 KIvK~A~~~~~~~v~eIgPgpggitR~il~a--~~~RL~vVE~D~RFip~LQ~L~EAa--~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 41 KIVKKAGNLTNAYVYEIGPGPGGITRSILNA--DVARLLVVEKDTRFIPGLQMLSEAA--PGKLRIHHGDVLRF 110 (326)
T ss_pred HHHHhccccccceeEEecCCCCchhHHHHhc--chhheeeeeeccccChHHHHHhhcC--CcceEEecccccee
Confidence 4455555666889999999999999998875 4568899999999888887776633 33577888998654
No 293
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=80.26 E-value=7 Score=38.14 Aligned_cols=106 Identities=15% Similarity=0.174 Sum_probs=66.5
Q ss_pred cccccccccccc---cchHHHHHHHhc----CCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHH
Q 012783 306 QAGLLKEGLCAV---QDESAGLVVAVV----DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA 378 (456)
Q Consensus 306 ~~~~~~~G~~~v---Qd~ss~lv~~~l----~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~ 378 (456)
.+..|.+|..-+ ||.-+.+ ..++ ..++|.. |+..+|+=-.+.++ +..+-++.++|.+++=...+++|+
T Consensus 56 ktgE~~~GI~RL~~a~~lpa~l-~~yl~~i~~lN~~~~-l~~YpGSP~lA~~l---lR~qDRl~l~ELHp~D~~~L~~~f 130 (279)
T COG2961 56 KTGEYEQGIARLWQAADLPAEL-EPYLDAVRQLNPGGG-LRYYPGSPLLARQL---LREQDRLVLTELHPSDAPLLRNNF 130 (279)
T ss_pred hhhHHHHHHHHHHhcCCchHHH-HHHHHHHHHhCCCCC-cccCCCCHHHHHHH---cchhceeeeeecCccHHHHHHHHh
Confidence 456677776544 3333222 2222 1334444 77777765444444 445789999999999999999998
Q ss_pred HHcCCCceEEEEeccccccccc---CCCCccEEEEcCCCCCCcc
Q 012783 379 KLHQVNSVIRTIHADLRTFADN---STVKCDKVLLDAPCSGLGV 419 (456)
Q Consensus 379 ~r~g~~~~V~~~~~Da~~~~~~---~~~~fD~VllDaPCSg~G~ 419 (456)
. +.. +|++..+|...-... ..++=-.||+|||.---+-
T Consensus 131 ~--~d~-~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~~e 171 (279)
T COG2961 131 A--GDR-RVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELKDE 171 (279)
T ss_pred C--CCc-ceEEEecCcHHHHhhhCCCCCcceEEEeCCCcccccH
Confidence 7 333 489999997542211 1234468999999865553
No 294
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=79.96 E-value=4.8 Score=38.39 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=31.8
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 331 ~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
..++-.|-|+|||-+-.+ +.+++.-+|...|.... ... ++.+|....|-. ++.+|++++
T Consensus 70 ~~~~~viaD~GCGdA~la----~~~~~~~~V~SfDLva~--------------n~~--Vtacdia~vPL~-~~svDv~Vf 128 (219)
T PF05148_consen 70 RPKSLVIADFGCGDAKLA----KAVPNKHKVHSFDLVAP--------------NPR--VTACDIANVPLE-DESVDVAVF 128 (219)
T ss_dssp S-TTS-EEEES-TT-HHH----HH--S---EEEEESS-S--------------STT--EEES-TTS-S---TT-EEEEEE
T ss_pred cCCCEEEEECCCchHHHH----HhcccCceEEEeeccCC--------------CCC--EEEecCccCcCC-CCceeEEEE
Confidence 334578999999998655 44455568999998543 122 456888877754 378999988
No 295
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.83 E-value=4.3 Score=41.00 Aligned_cols=58 Identities=16% Similarity=0.235 Sum_probs=47.9
Q ss_pred HHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012783 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (456)
Q Consensus 324 lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~ 385 (456)
.+....+++||++|.=.|.|.=|.+..+..+..+.++|+++|+++++.+.+++ +|...
T Consensus 183 Aa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~----fGaTe 240 (375)
T KOG0022|consen 183 AAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE----FGATE 240 (375)
T ss_pred hhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh----cCcce
Confidence 34566789999999999999888887777777788999999999999988764 67764
No 296
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=79.82 E-value=0.44 Score=45.05 Aligned_cols=41 Identities=27% Similarity=0.274 Sum_probs=34.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 376 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~ 376 (456)
...++||+|||-|-.|.+|+-.. .+|+|.|.|..|...++.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKK 152 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhh
Confidence 34689999999999999998764 469999999998877765
No 297
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.48 E-value=4.6 Score=36.35 Aligned_cols=71 Identities=20% Similarity=0.208 Sum_probs=55.9
Q ss_pred HHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccc
Q 012783 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397 (456)
Q Consensus 325 v~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~ 397 (456)
+..++.-.+..+.+|+|+|-|-.-+..++. +--.-+++|+++-.+...+-.+-|.|+...+.+...|...+
T Consensus 64 VLSll~~n~~GklvDlGSGDGRiVlaaar~--g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 64 VLSLLRGNPKGKLVDLGSGDGRIVLAAARC--GLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV 134 (199)
T ss_pred HHHHccCCCCCcEEeccCCCceeehhhhhh--CCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc
Confidence 345555567789999999999998888775 23457899999999999888888889887777777776543
No 298
>PF04031 Las1: Las1-like ; InterPro: IPR007174 Las1 is an essential nuclear protein involved in cell morphogenesis and cell surface growth [].
Probab=79.16 E-value=13 Score=33.67 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=27.0
Q ss_pred chhhHHHHHHHHHhhhcCCCCCCCcccCCchHHHHHHHHHhCChHHHHHH
Q 012783 187 AGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRR 236 (456)
Q Consensus 187 ~~~fVNaVLr~i~r~~~~~~~~~~~~~~~~~~~~~~la~~~s~P~wlv~~ 236 (456)
-.+||||+++...+... ...+-.+|...++|.|||+.
T Consensus 84 ivRfVNgl~D~~Q~~~~-------------a~si~~~A~~iglP~~lVdl 120 (154)
T PF04031_consen 84 IVRFVNGLVDPSQQGKY-------------ARSIASLAKEIGLPSWLVDL 120 (154)
T ss_pred HHHHHHHhhhHhhccch-------------hhhHHHHHHHcCCCHHHHHH
Confidence 46999999998653111 11355788899999999985
No 299
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=79.00 E-value=6.9 Score=35.71 Aligned_cols=93 Identities=13% Similarity=0.077 Sum_probs=55.4
Q ss_pred ccccchHHHHHHHhcC--CCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEec
Q 012783 315 CAVQDESAGLVVAVVD--PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 392 (456)
Q Consensus 315 ~~vQd~ss~lv~~~l~--~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~ 392 (456)
|+--|+.+..++..+. ..++.+|+=+||=+-...+.- ...+...++-.|++..- +.+|-+ .++.-
T Consensus 5 fwYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF--------~~~~~~---~F~fy 71 (162)
T PF10237_consen 5 FWYSDETAEFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRF--------EQFGGD---EFVFY 71 (162)
T ss_pred cccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchH--------HhcCCc---ceEEC
Confidence 4444555555555543 245789999988765554433 23356788999998653 233322 24455
Q ss_pred cccc---ccccCCCCccEEEEcCCCCCCccc
Q 012783 393 DLRT---FADNSTVKCDKVLLDAPCSGLGVL 420 (456)
Q Consensus 393 Da~~---~~~~~~~~fD~VllDaPCSg~G~i 420 (456)
|... ++....++||+|++|||--....+
T Consensus 72 D~~~p~~~~~~l~~~~d~vv~DPPFl~~ec~ 102 (162)
T PF10237_consen 72 DYNEPEELPEELKGKFDVVVIDPPFLSEECL 102 (162)
T ss_pred CCCChhhhhhhcCCCceEEEECCCCCCHHHH
Confidence 5433 233335799999999998444433
No 300
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=78.77 E-value=5.9 Score=40.84 Aligned_cols=50 Identities=24% Similarity=0.285 Sum_probs=40.4
Q ss_pred HhcCCCCCCeEEEEcCCC-chHHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q 012783 327 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNET 377 (456)
Q Consensus 327 ~~l~~~~g~~VLDlcAGp-Ggkt~~la~~~~~~g~V~AvDis~~rl~~l~~n 377 (456)
....+.+|++||..|+|+ |..+.++|+.++ .++|+++|.++++++.+++.
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHc
Confidence 455678899999998887 777888888863 35699999999998887764
No 301
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=78.15 E-value=3.4 Score=42.71 Aligned_cols=85 Identities=24% Similarity=0.269 Sum_probs=67.6
Q ss_pred hcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccE
Q 012783 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 407 (456)
Q Consensus 328 ~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~ 407 (456)
.....|+..++|++||-|+.+..++.. ....++++|.++..+..........++++.-.++.+|.-..+.. +..||.
T Consensus 105 ~~~~~~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fe-dn~fd~ 181 (364)
T KOG1269|consen 105 RESCFPGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFE-DNTFDG 181 (364)
T ss_pred hhcCcccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCC-ccccCc
Confidence 345677889999999999999999986 35789999999999999988888888887666677777655433 468886
Q ss_pred E-EEcCCCC
Q 012783 408 V-LLDAPCS 415 (456)
Q Consensus 408 V-llDaPCS 415 (456)
| ++|+=|-
T Consensus 182 v~~ld~~~~ 190 (364)
T KOG1269|consen 182 VRFLEVVCH 190 (364)
T ss_pred EEEEeeccc
Confidence 6 5677775
No 302
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=77.81 E-value=5.6 Score=40.55 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=47.0
Q ss_pred HHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012783 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (456)
Q Consensus 324 lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~ 385 (456)
.+...+++++|+.|.=.|+|-=|.+......+-+.++|+|+|+++++++.+++ +|...
T Consensus 176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~----fGAT~ 233 (366)
T COG1062 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK----FGATH 233 (366)
T ss_pred HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh----cCCce
Confidence 45677889999999999988766666666666678999999999999988764 67765
No 303
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=77.51 E-value=2.7 Score=40.96 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=38.7
Q ss_pred EcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---CCCCccEEEEcCCCCC
Q 012783 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---STVKCDKVLLDAPCSG 416 (456)
Q Consensus 340 lcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---~~~~fD~VllDaPCSg 416 (456)
+..-||+= ..++.++..+-+.+++|+++.-.+.+++|+... .+|.+++.|+.+.... ...+=-+||+|||.--
T Consensus 62 l~~YPGSP-~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~---~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~ 137 (245)
T PF04378_consen 62 LRFYPGSP-AIAARLLREQDRLVLFELHPQDFEALKKNFRRD---RRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQ 137 (245)
T ss_dssp --EEE-HH-HHHHHHS-TTSEEEEE--SHHHHHHHTTS--TT---S-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----S
T ss_pred cCcCCCCH-HHHHHhCCccceEEEEecCchHHHHHHHHhccC---CccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCC
Confidence 44556653 334455667889999999999999999987752 3589999998653211 1123469999999743
No 304
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=76.39 E-value=2.6 Score=40.66 Aligned_cols=72 Identities=8% Similarity=0.049 Sum_probs=52.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
....++|+||+-|...-|+... +-++++-+|.|..|++..+.. +..++. +....+|-..++ ..+.+||+|+.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~-qdp~i~--~~~~v~DEE~Ld-f~ens~DLiis 143 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDA-QDPSIE--TSYFVGDEEFLD-FKENSVDLIIS 143 (325)
T ss_pred hCcceeecccchhhhhHHHHhc--chhheeeeecchHHHHHhhcc-CCCceE--EEEEecchhccc-ccccchhhhhh
Confidence 3568999999999999988764 467999999999999887642 222332 455677766555 34578999874
No 305
>PRK06194 hypothetical protein; Provisional
Probab=76.07 E-value=14 Score=35.91 Aligned_cols=84 Identities=14% Similarity=0.104 Sum_probs=55.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~~ 403 (456)
+.+|| +-.|+|+.+.+++..+.. ...|+.+|.+.+.++...+.+...+. .+.++.+|....... ..+
T Consensus 6 ~k~vl-VtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~d~~~~~~~~~~~~~~~g 82 (287)
T PRK06194 6 GKVAV-ITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA--EVLGVRTDVSDAAQVEALADAALERFG 82 (287)
T ss_pred CCEEE-EeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 56777 445668888888876643 34799999998887776666654443 367788998653211 114
Q ss_pred CccEEEEcCCCCCCccc
Q 012783 404 KCDKVLLDAPCSGLGVL 420 (456)
Q Consensus 404 ~fD~VllDaPCSg~G~i 420 (456)
.+|.|+..+--++.|.+
T Consensus 83 ~id~vi~~Ag~~~~~~~ 99 (287)
T PRK06194 83 AVHLLFNNAGVGAGGLV 99 (287)
T ss_pred CCCEEEECCCCCCCCCc
Confidence 67999997765554433
No 306
>PRK08251 short chain dehydrogenase; Provisional
Probab=75.62 E-value=24 Score=33.27 Aligned_cols=84 Identities=15% Similarity=0.069 Sum_probs=55.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTV 403 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~~-g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~~ 403 (456)
+.+||=.| |+|+.+..+++.+... .+|+.++.+..+++.+...+....-...+.++..|...... ...+
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 34667555 5788888888766433 48999999999888777766544222347788888875421 1124
Q ss_pred CccEEEEcCCCCCCc
Q 012783 404 KCDKVLLDAPCSGLG 418 (456)
Q Consensus 404 ~fD~VllDaPCSg~G 418 (456)
..|.|+..+-.+..+
T Consensus 81 ~id~vi~~ag~~~~~ 95 (248)
T PRK08251 81 GLDRVIVNAGIGKGA 95 (248)
T ss_pred CCCEEEECCCcCCCC
Confidence 689999876544333
No 307
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=75.35 E-value=2.7 Score=35.81 Aligned_cols=66 Identities=20% Similarity=0.246 Sum_probs=41.7
Q ss_pred CCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccc-ccccC-CCCccEEEEcCCCCCC
Q 012783 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADNS-TVKCDKVLLDAPCSGL 417 (456)
Q Consensus 343 GpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~-~~~~~-~~~fD~VllDaPCSg~ 417 (456)
|-|..++++|..++ .+|+++|.++.+++.++ ++|.+..+.....|..+ +.... ...+|.|+- |+|.
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~----~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid---~~g~ 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAK----ELGADHVIDYSDDDFVEQIRELTGGRGVDVVID---CVGS 68 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHH----HTTESEEEETTTSSHHHHHHHHTTTSSEEEEEE---SSSS
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHH----hhcccccccccccccccccccccccccceEEEE---ecCc
Confidence 35788999999875 89999999999988765 47765322111112111 11112 247999987 6663
No 308
>PTZ00357 methyltransferase; Provisional
Probab=75.26 E-value=10 Score=42.09 Aligned_cols=63 Identities=22% Similarity=0.122 Sum_probs=43.7
Q ss_pred eEEEEcCCCchH---HHHHHHHcCCCceEEEEeCCHHHHHHHHHHH---HHcC-----CCceEEEEeccccccc
Q 012783 336 SIVDCCAAPGGK---TLYMASCLSGQGLVYAIDINKGRLRILNETA---KLHQ-----VNSVIRTIHADLRTFA 398 (456)
Q Consensus 336 ~VLDlcAGpGgk---t~~la~~~~~~g~V~AvDis~~rl~~l~~n~---~r~g-----~~~~V~~~~~Da~~~~ 398 (456)
.|+=+|||.|-. ++.+++..+-.-+|+|||.|+..+..+..+. +... ..+.|+++..|.+.+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~ 776 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIA 776 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccc
Confidence 589999999986 5556666555678999999966443333332 2231 1346999999999874
No 309
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=74.44 E-value=18 Score=34.51 Aligned_cols=81 Identities=17% Similarity=0.063 Sum_probs=56.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~ 402 (456)
.+.+||=.| |+|+.+.++++.+-. ..+|+.++.+...++.+.+.++..+. .+.++.+|..+.... ..
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~--~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI--DALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 467777777 577888888887643 34899999999888877777665543 366788888653211 11
Q ss_pred CCccEEEEcCCCCC
Q 012783 403 VKCDKVLLDAPCSG 416 (456)
Q Consensus 403 ~~fD~VllDaPCSg 416 (456)
+.+|.|+..+..+.
T Consensus 88 ~~id~vi~~ag~~~ 101 (259)
T PRK08213 88 GHVDILVNNAGATW 101 (259)
T ss_pred CCCCEEEECCCCCC
Confidence 46899999776543
No 310
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=74.38 E-value=3.1 Score=44.38 Aligned_cols=66 Identities=12% Similarity=0.113 Sum_probs=37.2
Q ss_pred CeEEEEcCCCchHHHHHHHHcCCCceEEEE---eCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAI---DINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 335 ~~VLDlcAGpGgkt~~la~~~~~~g~V~Av---Dis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
..+||+|||.|+++.+|.++ +-.+.++ |.++..++.+.+ -|++..+.+ .+ ...++. ....||+|-|
T Consensus 119 R~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~~~qvqfale----RGvpa~~~~-~~-s~rLPf-p~~~fDmvHc 187 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER---NVTTMSFAPNDEHEAQVQFALE----RGVPAMIGV-LG-SQRLPF-PSNAFDMVHC 187 (506)
T ss_pred EEEEeccceeehhHHHHhhC---CceEEEcccccCCchhhhhhhh----cCcchhhhh-hc-cccccC-Cccchhhhhc
Confidence 46999999999999999886 2233232 555555555443 355532211 11 123332 2367777653
No 311
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=74.28 E-value=7.1 Score=40.63 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=39.8
Q ss_pred hHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q 012783 320 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 376 (456)
Q Consensus 320 ~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~ 376 (456)
+....-..+|++.|+++||=+++|-... +.++. .+..+|+|||+|+.-+..++=
T Consensus 22 EDp~vD~~aL~i~~~d~vl~ItSaG~N~-L~yL~--~~P~~I~aVDlNp~Q~aLleL 75 (380)
T PF11899_consen 22 EDPRVDMEALNIGPDDRVLTITSAGCNA-LDYLL--AGPKRIHAVDLNPAQNALLEL 75 (380)
T ss_pred CCcHHHHHHhCCCCCCeEEEEccCCchH-HHHHh--cCCceEEEEeCCHHHHHHHHH
Confidence 4445557789999999999998876554 44432 345899999999987766553
No 312
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=74.25 E-value=3.5 Score=41.59 Aligned_cols=79 Identities=11% Similarity=0.177 Sum_probs=56.1
Q ss_pred EEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccc--ccc----cCCCCccEEEEc
Q 012783 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT--FAD----NSTVKCDKVLLD 411 (456)
Q Consensus 338 LDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~--~~~----~~~~~fD~VllD 411 (456)
+|+|.|.--.--.+...+. .-.-+|.|++......++.|..+.++...+.+++..... +.+ ..+..||.++|+
T Consensus 107 iDIgtgasci~~llg~rq~-n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQN-NWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeccCchhhhHHhhhchhc-cceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 6887766544444444443 367899999999999999999999998878777764321 111 113469999999
Q ss_pred CCCCCC
Q 012783 412 APCSGL 417 (456)
Q Consensus 412 aPCSg~ 417 (456)
||-.-.
T Consensus 186 PPFfe~ 191 (419)
T KOG2912|consen 186 PPFFEN 191 (419)
T ss_pred Cchhhc
Confidence 998644
No 313
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=73.10 E-value=5.7 Score=33.17 Aligned_cols=64 Identities=23% Similarity=0.182 Sum_probs=45.3
Q ss_pred CCCchHHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---cCCCCccEEEEcCC
Q 012783 342 AAPGGKTLYMASCLSGQG-LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---NSTVKCDKVLLDAP 413 (456)
Q Consensus 342 AGpGgkt~~la~~~~~~g-~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---~~~~~fD~VllDaP 413 (456)
||.|..+..+++.+...+ .|+.+|.++++++.+++ .| +.++.+|+..... ..-...|.|++..+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----EG----VEVIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT----SEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----cc----cccccccchhhhHHhhcCccccCEEEEccC
Confidence 566788888888877677 79999999999877654 34 3578899876421 12247889998666
No 314
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=72.80 E-value=13 Score=35.59 Aligned_cols=77 Identities=8% Similarity=0.124 Sum_probs=55.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc-cCCCCccEEEE
Q 012783 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVLL 410 (456)
Q Consensus 332 ~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~-~~~~~fD~Vll 410 (456)
..|.+||.+|-|-|...+.+-+. ++ ..-+-+|.++.-++.++++.=+. -.| |.++.+-..+..+ ..++.||.|+-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~-~p-~~H~IiE~hp~V~krmr~~gw~e-k~n-Viil~g~WeDvl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA-PP-DEHWIIEAHPDVLKRMRDWGWRE-KEN-VIILEGRWEDVLNTLPDKHFDGIYY 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc-CC-cceEEEecCHHHHHHHHhccccc-ccc-eEEEecchHhhhccccccCcceeEe
Confidence 57999999999999999888775 33 44566899999999888764322 123 6677665443322 23467999999
Q ss_pred cC
Q 012783 411 DA 412 (456)
Q Consensus 411 Da 412 (456)
|.
T Consensus 176 DT 177 (271)
T KOG1709|consen 176 DT 177 (271)
T ss_pred ec
Confidence 86
No 315
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=72.17 E-value=2.6 Score=39.70 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=39.1
Q ss_pred HHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHH
Q 012783 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKG 369 (456)
Q Consensus 325 v~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~ 369 (456)
+..+..++||++|+|+-=|.|.+|..++..++++|.|+++-..+.
T Consensus 40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~ 84 (238)
T COG4798 40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAEL 84 (238)
T ss_pred eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhh
Confidence 344567899999999999999999999999999999999866554
No 316
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=71.99 E-value=17 Score=39.92 Aligned_cols=82 Identities=15% Similarity=-0.015 Sum_probs=54.7
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCC-------CceEEEEeccccccccc
Q 012783 329 VDPQPGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQV-------NSVIRTIHADLRTFADN 400 (456)
Q Consensus 329 l~~~~g~~VLDlcAGpGgkt~~la~~~~-~~g~V~AvDis~~rl~~l~~n~~r~g~-------~~~V~~~~~Da~~~~~~ 400 (456)
++.+.|..||=.|| +|+.+.++++.+- .+..|++++.+..++..+.+.+...++ ...+.++.+|+.+....
T Consensus 75 ~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 75 LDTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred cccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 34556777776665 6888888887663 345899999999988777665544321 12377888998764321
Q ss_pred --CCCCccEEEEc
Q 012783 401 --STVKCDKVLLD 411 (456)
Q Consensus 401 --~~~~fD~VllD 411 (456)
..+.+|.|++.
T Consensus 154 ~~aLggiDiVVn~ 166 (576)
T PLN03209 154 GPALGNASVVICC 166 (576)
T ss_pred HHHhcCCCEEEEc
Confidence 12468998884
No 317
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=71.76 E-value=21 Score=33.98 Aligned_cols=83 Identities=14% Similarity=0.063 Sum_probs=55.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~~ 403 (456)
+.+|| +..|+|+.+.+++..+-. ...|+.++.+++..+.+.+.++..+. .+.++.+|..+.... ..+
T Consensus 7 ~~~vl-ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (262)
T PRK13394 7 GKTAV-VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGG--KAIGVAMDVTNEDAVNAGIDKVAERFG 83 (262)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCc--eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 56677 555667888887776543 34899999999888877777766553 367788887653211 124
Q ss_pred CccEEEEcCCCCCCcc
Q 012783 404 KCDKVLLDAPCSGLGV 419 (456)
Q Consensus 404 ~fD~VllDaPCSg~G~ 419 (456)
..|.|+..+-+...+.
T Consensus 84 ~~d~vi~~ag~~~~~~ 99 (262)
T PRK13394 84 SVDILVSNAGIQIVNP 99 (262)
T ss_pred CCCEEEECCccCCCCc
Confidence 5899988665543333
No 318
>PRK06949 short chain dehydrogenase; Provisional
Probab=71.47 E-value=26 Score=33.29 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=54.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQG-LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g-~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~ 402 (456)
.+.+||=.| |+|+.+.+++..+...| +|++++.+.++++.+...+...+. .+.++..|...... ...
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGG--AAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 467777777 67788888887765444 799999999998888777655443 36778888754211 112
Q ss_pred CCccEEEEcCCC
Q 012783 403 VKCDKVLLDAPC 414 (456)
Q Consensus 403 ~~fD~VllDaPC 414 (456)
+.+|.|+..+.-
T Consensus 85 ~~~d~li~~ag~ 96 (258)
T PRK06949 85 GTIDILVNNSGV 96 (258)
T ss_pred CCCCEEEECCCC
Confidence 468999986543
No 319
>PRK07102 short chain dehydrogenase; Provisional
Probab=71.23 E-value=25 Score=33.17 Aligned_cols=77 Identities=17% Similarity=0.103 Sum_probs=51.3
Q ss_pred eEEEEcCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc------cCCCCccEE
Q 012783 336 SIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD------NSTVKCDKV 408 (456)
Q Consensus 336 ~VLDlcAGpGgkt~~la~~~~~~-g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~------~~~~~fD~V 408 (456)
+|+=.| |+|+.+..++..+-.. .+|++++.+++..+.+.+.+...+-. ++.++.+|...... .....+|.|
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAV-AVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCC-eEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 566555 5688888887766433 48999999998887666665443333 47888899875422 112357999
Q ss_pred EEcCCC
Q 012783 409 LLDAPC 414 (456)
Q Consensus 409 llDaPC 414 (456)
+..+..
T Consensus 81 v~~ag~ 86 (243)
T PRK07102 81 LIAVGT 86 (243)
T ss_pred EECCcC
Confidence 987643
No 320
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=71.22 E-value=18 Score=34.29 Aligned_cols=82 Identities=17% Similarity=0.066 Sum_probs=54.3
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccc-----------
Q 012783 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA----------- 398 (456)
Q Consensus 331 ~~~g~~VLDlcAGpGgkt~~la~~~~~~-g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~----------- 398 (456)
..++.+||=.| |+|+.+..++..+-.. .+|+++|.+...+..+.+.++..+... +.++..|.....
T Consensus 9 ~~~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~ 86 (247)
T PRK08945 9 LLKDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQ-PAIIPLDLLTATPQNYQQLADTI 86 (247)
T ss_pred ccCCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCC-ceEEEecccCCCHHHHHHHHHHH
Confidence 34677888877 4678888777765433 489999999988887777777665433 556666663210
Q ss_pred ccCCCCccEEEEcCCC
Q 012783 399 DNSTVKCDKVLLDAPC 414 (456)
Q Consensus 399 ~~~~~~fD~VllDaPC 414 (456)
....+++|.|+..+-.
T Consensus 87 ~~~~~~id~vi~~Ag~ 102 (247)
T PRK08945 87 EEQFGRLDGVLHNAGL 102 (247)
T ss_pred HHHhCCCCEEEECCcc
Confidence 0112468999986643
No 321
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=70.41 E-value=12 Score=38.25 Aligned_cols=47 Identities=28% Similarity=0.421 Sum_probs=36.6
Q ss_pred CCCCCCeEEEEcCCCchHH-HHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q 012783 330 DPQPGQSIVDCCAAPGGKT-LYMASCLSGQGLVYAIDINKGRLRILNET 377 (456)
Q Consensus 330 ~~~~g~~VLDlcAGpGgkt-~~la~~~~~~g~V~AvDis~~rl~~l~~n 377 (456)
...++++|+=+||||=|.. ..+++. .+..+|+++|.++.|++.+++.
T Consensus 165 ~~~~~~~V~V~GaGpIGLla~~~a~~-~Ga~~Viv~d~~~~Rl~~A~~~ 212 (350)
T COG1063 165 AVRPGGTVVVVGAGPIGLLAIALAKL-LGASVVIVVDRSPERLELAKEA 212 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH-cCCceEEEeCCCHHHHHHHHHh
Confidence 3455669999999996665 555555 4578999999999999998763
No 322
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=69.64 E-value=8 Score=38.20 Aligned_cols=62 Identities=16% Similarity=0.102 Sum_probs=41.5
Q ss_pred CeEEEEcCC--CchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccc
Q 012783 335 QSIVDCCAA--PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397 (456)
Q Consensus 335 ~~VLDlcAG--pGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~ 397 (456)
...||+||| +-+.+=++|+...+..+|+-+|+++--+..++..+....- .+..++.+|.++.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p 133 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDP 133 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-H
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCH
Confidence 689999999 3345778888888999999999999999888887765432 2467899998764
No 323
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=69.20 E-value=35 Score=32.47 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=54.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~-~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~ 402 (456)
.|.+||=.| |+|+.+..++..+- ...+|+.++.++..++.+.+.++..|. .+.++..|..+... ...
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL--SAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc--eEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 467888777 47888888877654 345899999999888877777766553 36678888765321 112
Q ss_pred CCccEEEEcCCCC
Q 012783 403 VKCDKVLLDAPCS 415 (456)
Q Consensus 403 ~~fD~VllDaPCS 415 (456)
+..|.|+..+-..
T Consensus 86 ~~~d~li~~ag~~ 98 (255)
T PRK07523 86 GPIDILVNNAGMQ 98 (255)
T ss_pred CCCCEEEECCCCC
Confidence 4689999866443
No 324
>PRK06197 short chain dehydrogenase; Provisional
Probab=68.45 E-value=56 Score=32.19 Aligned_cols=80 Identities=16% Similarity=0.105 Sum_probs=52.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~-g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~ 402 (456)
.|.+||=. .|+|+.+.+++..+... .+|+.++.+.+....+.+.+....-...+.++..|....... ..
T Consensus 15 ~~k~vlIt-Gas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 15 SGRVAVVT-GANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCCEEEEc-CCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 45677744 45788888888865433 488899998888776666554331122367888887654210 12
Q ss_pred CCccEEEEcCC
Q 012783 403 VKCDKVLLDAP 413 (456)
Q Consensus 403 ~~fD~VllDaP 413 (456)
+.+|.|+..+-
T Consensus 94 ~~iD~li~nAg 104 (306)
T PRK06197 94 PRIDLLINNAG 104 (306)
T ss_pred CCCCEEEECCc
Confidence 46899999764
No 325
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=68.02 E-value=11 Score=31.08 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=31.3
Q ss_pred EcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 340 lcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
+|||.|.-|..+++.+ ++.++..|++ +.+...+..+..... ..+|.||+
T Consensus 4 ~~Cg~G~sTS~~~~ki-------------------~~~~~~~~~~--~~v~~~~~~~~~~~~-~~~Diil~ 52 (96)
T cd05564 4 LVCSAGMSTSILVKKM-------------------KKAAEKRGID--AEIEAVPESELEEYI-DDADVVLL 52 (96)
T ss_pred EEcCCCchHHHHHHHH-------------------HHHHHHCCCc--eEEEEecHHHHHHhc-CCCCEEEE
Confidence 6788888777666543 5566677775 566666665544322 46787777
No 326
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=67.98 E-value=13 Score=36.63 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=40.1
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 012783 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ 382 (456)
Q Consensus 330 ~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g 382 (456)
--.+|+.|||-.+|+|........ + .-..+++|++++-++.+.+++....
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~-~--~r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKN-L--GRRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHH-c--CCceEEEecCHHHHHHHHHHHHhhc
Confidence 356899999999999987655444 3 3578899999999999999987653
No 327
>PRK06914 short chain dehydrogenase; Provisional
Probab=67.97 E-value=34 Score=33.06 Aligned_cols=85 Identities=18% Similarity=0.072 Sum_probs=55.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc--------CCCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--------STVK 404 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~--------~~~~ 404 (456)
+..||=.| |+|+.+..++..+-. ...|++++.+.+.++.+.+.+...+....+.++.+|..+.... ..++
T Consensus 3 ~k~~lItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVTG-ASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 34555555 566777777765433 3489999999888887777666666554578888898653211 1146
Q ss_pred ccEEEEcCCCCCCcc
Q 012783 405 CDKVLLDAPCSGLGV 419 (456)
Q Consensus 405 fD~VllDaPCSg~G~ 419 (456)
.|.|+..+..+..+.
T Consensus 82 id~vv~~ag~~~~~~ 96 (280)
T PRK06914 82 IDLLVNNAGYANGGF 96 (280)
T ss_pred eeEEEECCcccccCc
Confidence 799998765544443
No 328
>PRK05599 hypothetical protein; Provisional
Probab=66.90 E-value=25 Score=33.50 Aligned_cols=75 Identities=9% Similarity=-0.015 Sum_probs=52.3
Q ss_pred eEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCCCCcc
Q 012783 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTVKCD 406 (456)
Q Consensus 336 ~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~~~fD 406 (456)
.||=.|+ ++|.+..++..+....+|+.++.+.+.++.+.+.++..|-. .+.++..|+.+... ...+..|
T Consensus 2 ~vlItGa-s~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id 79 (246)
T PRK05599 2 SILILGG-TSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGAT-SVHVLSFDAQDLDTHRELVKQTQELAGEIS 79 (246)
T ss_pred eEEEEeC-ccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCC-ceEEEEcccCCHHHHHHHHHHHHHhcCCCC
Confidence 3554444 56788888887766678999999999998888887766543 26677888765321 1125789
Q ss_pred EEEEcC
Q 012783 407 KVLLDA 412 (456)
Q Consensus 407 ~VllDa 412 (456)
.++..+
T Consensus 80 ~lv~na 85 (246)
T PRK05599 80 LAVVAF 85 (246)
T ss_pred EEEEec
Confidence 998854
No 329
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=66.68 E-value=43 Score=31.80 Aligned_cols=81 Identities=12% Similarity=0.129 Sum_probs=54.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~-g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~ 402 (456)
.+..||=.| |+|+.+..++..+-.. ..|+.++.+...+..+.+.++..+. .+.++..|..+... ...
T Consensus 8 ~~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (254)
T PRK08085 8 AGKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGI--KAHAAPFNVTHKQEVEAAIEHIEKDI 84 (254)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC--eEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 356677776 4567888888766443 4899999998888877777765543 35677788764321 112
Q ss_pred CCccEEEEcCCCCC
Q 012783 403 VKCDKVLLDAPCSG 416 (456)
Q Consensus 403 ~~fD~VllDaPCSg 416 (456)
+.+|.|+..+-...
T Consensus 85 ~~id~vi~~ag~~~ 98 (254)
T PRK08085 85 GPIDVLINNAGIQR 98 (254)
T ss_pred CCCCEEEECCCcCC
Confidence 46899999775543
No 330
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=66.26 E-value=14 Score=30.45 Aligned_cols=53 Identities=21% Similarity=0.230 Sum_probs=33.2
Q ss_pred CeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 335 ~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
.+|| +|||.|.-|..++..+ ++.++..|++ +.+...+..++.... ..+|.||+
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k~-------------------~~~~~~~gi~--~~v~a~~~~~~~~~~-~~~Dvill 56 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNKM-------------------NKAAEEYGVP--VKIAAGSYGAAGEKL-DDADVVLL 56 (95)
T ss_pred cEEE-EECCCchhHHHHHHHH-------------------HHHHHHCCCc--EEEEEecHHHHHhhc-CCCCEEEE
Confidence 3566 6777887776666543 4556667776 556666655554332 45788887
No 331
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=65.95 E-value=37 Score=32.26 Aligned_cols=81 Identities=14% Similarity=0.031 Sum_probs=50.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~~ 403 (456)
+..||=.|+ +|+.+.+++..+.. ...|+.+|.+...++.+.+.++...-...+.++..|..+.... ..+
T Consensus 2 ~k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 346777775 57777777766543 3589999999888776665554322112367888887653210 114
Q ss_pred CccEEEEcCCCC
Q 012783 404 KCDKVLLDAPCS 415 (456)
Q Consensus 404 ~fD~VllDaPCS 415 (456)
..|.|+..+-..
T Consensus 81 ~id~vv~~ag~~ 92 (259)
T PRK12384 81 RVDLLVYNAGIA 92 (259)
T ss_pred CCCEEEECCCcC
Confidence 679988876433
No 332
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=65.45 E-value=36 Score=32.16 Aligned_cols=78 Identities=17% Similarity=0.086 Sum_probs=53.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~~-g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~~ 403 (456)
+.+||=. .|+|+.+.+++..+-.. .+|+.++.++...+.+...++..+. .+.++.+|..+.... ..+
T Consensus 4 ~~~vlIt-G~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 4 GKVALVT-GAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGG--KAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCEEEEE-CCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4566644 45788899988876433 4899999999988877777766554 367788887643210 114
Q ss_pred CccEEEEcCCC
Q 012783 404 KCDKVLLDAPC 414 (456)
Q Consensus 404 ~fD~VllDaPC 414 (456)
.+|.|+..+..
T Consensus 81 ~~d~vi~~a~~ 91 (258)
T PRK12429 81 GVDILVNNAGI 91 (258)
T ss_pred CCCEEEECCCC
Confidence 68999986543
No 333
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=65.37 E-value=9 Score=38.37 Aligned_cols=79 Identities=9% Similarity=0.089 Sum_probs=61.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHc--CCC-ceEEEEecccccccccC-CCCccEE
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH--QVN-SVIRTIHADLRTFADNS-TVKCDKV 408 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~--g~~-~~V~~~~~Da~~~~~~~-~~~fD~V 408 (456)
..++||=+|-|-||.--..+.. ..-+.|.-+|+++.-++.-++-+..+ |.. .+|.++-||+..+.... .++||+|
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 4579999999999987766655 44578999999999998888877654 332 35889999998776544 5789999
Q ss_pred EEcC
Q 012783 409 LLDA 412 (456)
Q Consensus 409 llDa 412 (456)
++|-
T Consensus 200 i~ds 203 (337)
T KOG1562|consen 200 ITDS 203 (337)
T ss_pred EEec
Confidence 9983
No 334
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=65.28 E-value=39 Score=33.21 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=48.3
Q ss_pred hcCCCCCCeEEEEcCCCchHHHHHHHHcCCC---ceEEEEeCCHHHHHHHHHHHHHc--CCCceEEEEeccccc
Q 012783 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ---GLVYAIDINKGRLRILNETAKLH--QVNSVIRTIHADLRT 396 (456)
Q Consensus 328 ~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~---g~V~AvDis~~rl~~l~~n~~r~--g~~~~V~~~~~Da~~ 396 (456)
+.....+...+|+|+|.-.||..+...+... .+-+.+|++..-++...+.+.+- +++ |.-+++|...
T Consensus 73 ia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~--v~~l~~~~~~ 144 (321)
T COG4301 73 IASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLE--VNALCGDYEL 144 (321)
T ss_pred HHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCe--EeehhhhHHH
Confidence 3334458899999999999999988776543 46789999999887655554432 333 6677777643
No 335
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=65.24 E-value=31 Score=34.67 Aligned_cols=52 Identities=12% Similarity=0.170 Sum_probs=35.0
Q ss_pred cCCCCCCeEEEEcCCC-chHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012783 329 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (456)
Q Consensus 329 l~~~~g~~VLDlcAGp-Ggkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~ 385 (456)
....+|++||=.|||+ |..++++|..++ ..+|+++|.++++++.++ .+|.+.
T Consensus 165 ~~~~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~----~lGa~~ 217 (343)
T PRK09880 165 AGDLQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLAR----EMGADK 217 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHH----HcCCcE
Confidence 3456799999887642 223455666542 347999999999988765 467653
No 336
>PRK07576 short chain dehydrogenase; Provisional
Probab=65.03 E-value=29 Score=33.48 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=51.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~ 402 (456)
++.+||-.|+ +|+.+..+++.+.. ...|++++.+.+.+....+.+...+. .+.++..|....... ..
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGP--EGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC--ceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4678887774 67788877765543 34899999998888777666665543 256778887642210 12
Q ss_pred CCccEEEEcC
Q 012783 403 VKCDKVLLDA 412 (456)
Q Consensus 403 ~~fD~VllDa 412 (456)
..+|.|+..+
T Consensus 85 ~~iD~vi~~a 94 (264)
T PRK07576 85 GPIDVLVSGA 94 (264)
T ss_pred CCCCEEEECC
Confidence 4679999865
No 337
>PRK07831 short chain dehydrogenase; Provisional
Probab=64.76 E-value=43 Score=32.00 Aligned_cols=80 Identities=18% Similarity=0.128 Sum_probs=51.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHH-cCCCceEEEEecccccccc---------cC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKL-HQVNSVIRTIHADLRTFAD---------NS 401 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r-~g~~~~V~~~~~Da~~~~~---------~~ 401 (456)
.+.+||=.|++.+|.+..++..+.. ...|+.+|.+...++...+.++. ++.. .+.++..|...... ..
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~ 94 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLG-RVEAVVCDVTSEAQVDALIDAAVER 94 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCc-eEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3677888776533566666665432 35799999999888877776655 4432 36778888765321 01
Q ss_pred CCCccEEEEcCC
Q 012783 402 TVKCDKVLLDAP 413 (456)
Q Consensus 402 ~~~fD~VllDaP 413 (456)
.+..|.++..+-
T Consensus 95 ~g~id~li~~ag 106 (262)
T PRK07831 95 LGRLDVLVNNAG 106 (262)
T ss_pred cCCCCEEEECCC
Confidence 246899988664
No 338
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=64.39 E-value=22 Score=35.08 Aligned_cols=65 Identities=20% Similarity=0.275 Sum_probs=43.8
Q ss_pred HHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccc
Q 012783 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394 (456)
Q Consensus 325 v~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da 394 (456)
.-++-+++||+.||-- |+.||.++.+++++.- ..++++.--+.++.+.+++| |+...|.....|.
T Consensus 138 l~e~y~vkpGhtVlvh-aAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~aken----G~~h~I~y~~eD~ 203 (336)
T KOG1197|consen 138 LFEAYNVKPGHTVLVH-AAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKEN----GAEHPIDYSTEDY 203 (336)
T ss_pred HHHhcCCCCCCEEEEE-eccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhc----CCcceeeccchhH
Confidence 3445678999999854 5556666666555432 35788888888888887775 6665555555664
No 339
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=63.96 E-value=54 Score=30.72 Aligned_cols=79 Identities=19% Similarity=0.141 Sum_probs=53.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTV 403 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~-~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~~ 403 (456)
+..||=.|+ +|+.+.+++..+ .....|+.++.+...++...+.++..+. .+.++..|...... ...+
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGV--KVVIATADVSDYEEVTAAIEQLKNELG 83 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC--eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 567777774 788888887754 3345899999998887776666655443 47788888765321 0114
Q ss_pred CccEEEEcCCCC
Q 012783 404 KCDKVLLDAPCS 415 (456)
Q Consensus 404 ~fD~VllDaPCS 415 (456)
..|.|+..+...
T Consensus 84 ~id~vi~~ag~~ 95 (239)
T PRK07666 84 SIDILINNAGIS 95 (239)
T ss_pred CccEEEEcCccc
Confidence 689999876543
No 340
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=63.38 E-value=30 Score=34.13 Aligned_cols=51 Identities=20% Similarity=0.365 Sum_probs=36.7
Q ss_pred cCCCCCCeEEEEcCCC-chHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012783 329 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (456)
Q Consensus 329 l~~~~g~~VLDlcAGp-Ggkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~ 385 (456)
..+.++++||..++|. |..++++|..++ .+|++++.++++.+.+++ +|++.
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~----~g~~~ 212 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKE----LGADE 212 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----hCCCE
Confidence 3467899999976553 666777777753 569999999988876643 56643
No 341
>PRK07814 short chain dehydrogenase; Provisional
Probab=62.47 E-value=45 Score=32.00 Aligned_cols=77 Identities=17% Similarity=0.075 Sum_probs=53.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~-~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~ 402 (456)
.+.+||=.|+ +|+.+.++++.+- ...+|+.++.+.+.++.+.+.++..+. .+.++..|....... ..
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGR--RAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4678888775 6778888887553 345899999999888777777665443 367788887654221 01
Q ss_pred CCccEEEEcC
Q 012783 403 VKCDKVLLDA 412 (456)
Q Consensus 403 ~~fD~VllDa 412 (456)
+.+|.|+..+
T Consensus 86 ~~id~vi~~A 95 (263)
T PRK07814 86 GRLDIVVNNV 95 (263)
T ss_pred CCCCEEEECC
Confidence 4689888865
No 342
>PRK12939 short chain dehydrogenase; Provisional
Probab=61.68 E-value=47 Score=31.14 Aligned_cols=77 Identities=21% Similarity=0.087 Sum_probs=52.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~ 402 (456)
.+.+||=. .|.|+.+.+++..+.. ..+|++++.+++.+....+.++..+. .+.++.+|..+.... ..
T Consensus 6 ~~~~vlIt-Ga~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 6 AGKRALVT-GAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGG--RAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCEEEEe-CCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 35677744 4578888888876643 35788999998888877776665543 377888888653210 01
Q ss_pred CCccEEEEcC
Q 012783 403 VKCDKVLLDA 412 (456)
Q Consensus 403 ~~fD~VllDa 412 (456)
+.+|.|+..+
T Consensus 83 ~~id~vi~~a 92 (250)
T PRK12939 83 GGLDGLVNNA 92 (250)
T ss_pred CCCCEEEECC
Confidence 4689998855
No 343
>PRK08703 short chain dehydrogenase; Provisional
Probab=61.24 E-value=33 Score=32.27 Aligned_cols=80 Identities=15% Similarity=0.088 Sum_probs=51.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccc-----c-------c
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-----A-------D 399 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~-----~-------~ 399 (456)
.+.+||=.| |+|+.+..++..+.. ..+|+.++.++.+++.+.+.+...+... +.++..|.... . .
T Consensus 5 ~~k~vlItG-~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~i~~ 82 (239)
T PRK08703 5 SDKTILVTG-ASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPE-PFAIRFDLMSAEEKEFEQFAATIAE 82 (239)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCC-cceEEeeecccchHHHHHHHHHHHH
Confidence 456788777 567788887776543 4589999999998887777766554332 44555665321 0 0
Q ss_pred cCCCCccEEEEcCCC
Q 012783 400 NSTVKCDKVLLDAPC 414 (456)
Q Consensus 400 ~~~~~fD~VllDaPC 414 (456)
...+.+|.|+..+-.
T Consensus 83 ~~~~~id~vi~~ag~ 97 (239)
T PRK08703 83 ATQGKLDGIVHCAGY 97 (239)
T ss_pred HhCCCCCEEEEeccc
Confidence 111467999986643
No 344
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=60.51 E-value=64 Score=30.34 Aligned_cols=79 Identities=15% Similarity=0.048 Sum_probs=52.1
Q ss_pred eEEEEcCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccc-------c--cCCCCc
Q 012783 336 SIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-------D--NSTVKC 405 (456)
Q Consensus 336 ~VLDlcAGpGgkt~~la~~~~-~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~-------~--~~~~~f 405 (456)
+||=.| |+|+.+..++..+- ...+|++++.+....+.+...+...+. .+.++.+|..... . ......
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 79 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGG--SVIYLVADVTKEDEIADMIAAAAAEFGGL 79 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 455444 66888888887653 234899999998888777776665443 3778888876532 1 112457
Q ss_pred cEEEEcCCCCCC
Q 012783 406 DKVLLDAPCSGL 417 (456)
Q Consensus 406 D~VllDaPCSg~ 417 (456)
|.|+..+-.+..
T Consensus 80 d~vi~~a~~~~~ 91 (255)
T TIGR01963 80 DILVNNAGIQHV 91 (255)
T ss_pred CEEEECCCCCCC
Confidence 999987754433
No 345
>PRK06139 short chain dehydrogenase; Provisional
Probab=59.49 E-value=62 Score=32.72 Aligned_cols=84 Identities=12% Similarity=0.112 Sum_probs=56.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~-~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~ 402 (456)
.+..||=.|| +||.+..++..+. ...+|+.++.++++++.+.+.++..|.. +.++..|..+... ...
T Consensus 6 ~~k~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~--~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (330)
T PRK06139 6 HGAVVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAE--VLVVPTDVTDADQVKALATQAASFG 82 (330)
T ss_pred CCCEEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc--EEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 3556665554 6778887777553 3458999999999999888888877653 5667778764221 112
Q ss_pred CCccEEEEcCCCCCCcc
Q 012783 403 VKCDKVLLDAPCSGLGV 419 (456)
Q Consensus 403 ~~fD~VllDaPCSg~G~ 419 (456)
+.+|.++..+-....|.
T Consensus 83 g~iD~lVnnAG~~~~~~ 99 (330)
T PRK06139 83 GRIDVWVNNVGVGAVGR 99 (330)
T ss_pred CCCCEEEECCCcCCCCC
Confidence 57899999765444343
No 346
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=58.80 E-value=31 Score=34.82 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=37.4
Q ss_pred cCCCCCCeEEEEcCCC-chHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCC
Q 012783 329 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384 (456)
Q Consensus 329 l~~~~g~~VLDlcAGp-Ggkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~ 384 (456)
..+++|++||=.|+|+ |..++++|..++ .+|+++|.++++++.+++ +|.+
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~----~Ga~ 212 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKG----FGAD 212 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH----hCCc
Confidence 4677899999999865 555666777753 479999999999877643 5664
No 347
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=58.76 E-value=19 Score=36.16 Aligned_cols=67 Identities=16% Similarity=0.185 Sum_probs=45.3
Q ss_pred ccccccccc-chHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHH
Q 012783 310 LKEGLCAVQ-DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK 379 (456)
Q Consensus 310 ~~~G~~~vQ-d~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~ 379 (456)
+..|..|.| ++.+..=...+...+|.+|.-+|+|--..-.+++.. ..+|.+||+++..+..-+-.+.
T Consensus 39 lFsgLvYpqiwEDp~Vdmeam~~g~ghrivtigSGGcn~L~ylsr~---Pa~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 39 LFSGLVYPQIWEDPSVDMEAMQLGIGHRIVTIGSGGCNMLAYLSRA---PARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred HhcccccccccCCccccHHHHhcCCCcEEEEecCCcchHHHHhhcC---CceeEEEeCCHHHHHHHHHHHH
Confidence 445666654 333333345566678999999988877666666653 5799999999998876554443
No 348
>PRK06138 short chain dehydrogenase; Provisional
Probab=58.46 E-value=58 Score=30.59 Aligned_cols=81 Identities=12% Similarity=0.008 Sum_probs=52.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~~ 403 (456)
+.+||=.|| .|+.+.+++..+-. ..+|+.++.+...+....+.+. .+ ..+.++.+|..+.... ..+
T Consensus 5 ~k~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 80 (252)
T PRK06138 5 GRVAIVTGA-GSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AG--GRAFARQGDVGSAEAVEALVDFVAARWG 80 (252)
T ss_pred CcEEEEeCC-CchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cC--CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 456666665 57788888775543 3589999998887776666554 33 3477888888653211 114
Q ss_pred CccEEEEcCCCCCCc
Q 012783 404 KCDKVLLDAPCSGLG 418 (456)
Q Consensus 404 ~fD~VllDaPCSg~G 418 (456)
.+|.|+..+..+..+
T Consensus 81 ~id~vi~~ag~~~~~ 95 (252)
T PRK06138 81 RLDVLVNNAGFGCGG 95 (252)
T ss_pred CCCEEEECCCCCCCC
Confidence 789999866554433
No 349
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=58.39 E-value=47 Score=33.30 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=45.9
Q ss_pred hcCCCCCCeEEEEcCCCch-HHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc-CCCCc
Q 012783 328 VVDPQPGQSIVDCCAAPGG-KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKC 405 (456)
Q Consensus 328 ~l~~~~g~~VLDlcAGpGg-kt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~-~~~~f 405 (456)
.....+|++||=.|+|+=| .+.++|..++ ...|++++.++++++.++ .+|.+..+.....+...+... ....+
T Consensus 155 ~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~----~~Ga~~~i~~~~~~~~~~~~~~~~~~~ 229 (347)
T PRK10309 155 LAQGCEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINSEKLALAK----SLGAMQTFNSREMSAPQIQSVLRELRF 229 (347)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHH----HcCCceEecCcccCHHHHHHHhcCCCC
Confidence 3456789999988764322 3455666653 335899999999888653 456643221111111111111 12357
Q ss_pred cEEEEcCCCCCC
Q 012783 406 DKVLLDAPCSGL 417 (456)
Q Consensus 406 D~VllDaPCSg~ 417 (456)
|.+++| |+|.
T Consensus 230 d~~v~d--~~G~ 239 (347)
T PRK10309 230 DQLILE--TAGV 239 (347)
T ss_pred CeEEEE--CCCC
Confidence 766677 6663
No 350
>PRK07904 short chain dehydrogenase; Provisional
Probab=58.06 E-value=34 Score=32.82 Aligned_cols=76 Identities=12% Similarity=0.014 Sum_probs=51.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCC--ceEEEEeCCHHH-HHHHHHHHHHcCCCceEEEEecccccccc------c--C
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGR-LRILNETAKLHQVNSVIRTIHADLRTFAD------N--S 401 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~--g~V~AvDis~~r-l~~l~~n~~r~g~~~~V~~~~~Da~~~~~------~--~ 401 (456)
.+.+||-.|| +||.+..+++.+-.. .+|++++.+.+. ++.+.+.++..+..+ +.++..|..+... . .
T Consensus 7 ~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~-v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 7 NPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASS-VEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCc-eEEEEecCCChHHHHHHHHHHHh
Confidence 4566776666 688999998865333 489999998875 777766676665433 7888888764321 0 0
Q ss_pred CCCccEEEE
Q 012783 402 TVKCDKVLL 410 (456)
Q Consensus 402 ~~~fD~Vll 410 (456)
.+..|.++.
T Consensus 85 ~g~id~li~ 93 (253)
T PRK07904 85 GGDVDVAIV 93 (253)
T ss_pred cCCCCEEEE
Confidence 146898887
No 351
>PRK07063 short chain dehydrogenase; Provisional
Probab=58.03 E-value=76 Score=30.14 Aligned_cols=79 Identities=14% Similarity=0.088 Sum_probs=53.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~ 402 (456)
.+.+||-.|+ +|+.+..++..+-. ..+|+.++.+++.++.+.+.+...+....+.++..|..+.... ..
T Consensus 6 ~~k~vlVtGa-s~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 6 AGKVALVTGA-AQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 3667887776 46778877776543 3589999999998888877776532233477888887653210 12
Q ss_pred CCccEEEEcC
Q 012783 403 VKCDKVLLDA 412 (456)
Q Consensus 403 ~~fD~VllDa 412 (456)
+.+|.++..+
T Consensus 85 g~id~li~~a 94 (260)
T PRK07063 85 GPLDVLVNNA 94 (260)
T ss_pred CCCcEEEECC
Confidence 4689998865
No 352
>PRK06172 short chain dehydrogenase; Provisional
Probab=56.85 E-value=58 Score=30.77 Aligned_cols=76 Identities=12% Similarity=-0.015 Sum_probs=52.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTV 403 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~~ 403 (456)
+.+||=.|+ +|+.+..++..+.. ..+|+.++.+.+.++.+.+.++..+. .+.++.+|..+... ...+
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGG--EALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 567777775 66777777765543 35899999999888877777766653 37788888864321 0124
Q ss_pred CccEEEEcC
Q 012783 404 KCDKVLLDA 412 (456)
Q Consensus 404 ~fD~VllDa 412 (456)
++|.|+..+
T Consensus 84 ~id~li~~a 92 (253)
T PRK06172 84 RLDYAFNNA 92 (253)
T ss_pred CCCEEEECC
Confidence 679998854
No 353
>PRK07062 short chain dehydrogenase; Provisional
Probab=56.84 E-value=78 Score=30.17 Aligned_cols=81 Identities=16% Similarity=0.062 Sum_probs=52.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~-~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~ 402 (456)
.|..+|=.|+ +|+.+..++..+. ...+|+.++.+.+.++.+.+.+....-...+.++..|..+... ...
T Consensus 7 ~~k~~lItGa-s~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 7 EGRVAVVTGG-SSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 3567777775 4667777776653 3458999999998888777666544222246677888765421 112
Q ss_pred CCccEEEEcCCC
Q 012783 403 VKCDKVLLDAPC 414 (456)
Q Consensus 403 ~~fD~VllDaPC 414 (456)
+.+|.++..+-.
T Consensus 86 g~id~li~~Ag~ 97 (265)
T PRK07062 86 GGVDMLVNNAGQ 97 (265)
T ss_pred CCCCEEEECCCC
Confidence 468999886643
No 354
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=56.63 E-value=23 Score=35.77 Aligned_cols=47 Identities=9% Similarity=0.017 Sum_probs=33.5
Q ss_pred CCCCCCeEEEEcCCCchH-HHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q 012783 330 DPQPGQSIVDCCAAPGGK-TLYMASCLSGQGLVYAIDINKGRLRILNE 376 (456)
Q Consensus 330 ~~~~g~~VLDlcAGpGgk-t~~la~~~~~~g~V~AvDis~~rl~~l~~ 376 (456)
.+++|++||=.|||+=|. +++++..+.+..+|+++|.++++++.+++
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 457899999998755443 34555543334689999999999988764
No 355
>PRK05855 short chain dehydrogenase; Validated
Probab=56.44 E-value=67 Score=34.41 Aligned_cols=86 Identities=19% Similarity=0.087 Sum_probs=58.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~ 402 (456)
.+.++|=.|+ +|+.+.+++..+.. ..+|+.++.+...++.+.+.++..|. .+.++..|..+... ...
T Consensus 314 ~~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~~ 390 (582)
T PRK05855 314 SGKLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGA--VAHAYRVDVSDADAMEAFAEWVRAEH 390 (582)
T ss_pred CCCEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 3566775555 78888888877643 34799999999988888777776665 37788889875421 112
Q ss_pred CCccEEEEcCCCCCCcccc
Q 012783 403 VKCDKVLLDAPCSGLGVLS 421 (456)
Q Consensus 403 ~~fD~VllDaPCSg~G~ir 421 (456)
+.+|.++..+-....|.+.
T Consensus 391 g~id~lv~~Ag~~~~~~~~ 409 (582)
T PRK05855 391 GVPDIVVNNAGIGMAGGFL 409 (582)
T ss_pred CCCcEEEECCccCCCCCcc
Confidence 4689999977554444433
No 356
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=56.40 E-value=5 Score=42.65 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=58.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc------cCCCCcc
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD------NSTVKCD 406 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~------~~~~~fD 406 (456)
-+..+|=+|=|.|+....+-..+ +...|+|+++++.+++.+..+.....-. +..++..|+..+.. .....||
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred ccCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCc
Confidence 35677888888899887776555 4589999999999999999997654433 23455566654321 1245799
Q ss_pred EEEEcCCCCC
Q 012783 407 KVLLDAPCSG 416 (456)
Q Consensus 407 ~VllDaPCSg 416 (456)
++++|+--+-
T Consensus 373 vl~~dvds~d 382 (482)
T KOG2352|consen 373 VLMVDVDSKD 382 (482)
T ss_pred EEEEECCCCC
Confidence 9999975543
No 357
>KOG2425 consensus Nuclear protein involved in cell morphogenesis and cell surface growth [General function prediction only]
Probab=56.39 E-value=47 Score=35.41 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHHhhhcCCCCCCCcccCCchHHHHHHHHHhCChHHHHHH
Q 012783 188 GNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRR 236 (456)
Q Consensus 188 ~~fVNaVLr~i~r~~~~~~~~~~~~~~~~~~~~~~la~~~s~P~wlv~~ 236 (456)
.+||||+++...+..... +...+|...++|.|||+.
T Consensus 106 ~RfVNglid~tqqsq~aV-------------pla~lA~~IgiP~wfVDL 141 (599)
T KOG2425|consen 106 VRFVNGLIDPTQQSQAAV-------------PLACLAQEIGIPDWFVDL 141 (599)
T ss_pred HHHHHhccCHHhhhhhcc-------------cHHHHHHHcCCcHHHHHh
Confidence 589999999876633211 245678889999999974
No 358
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=56.38 E-value=32 Score=29.94 Aligned_cols=78 Identities=15% Similarity=0.168 Sum_probs=46.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEc
Q 012783 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (456)
Q Consensus 332 ~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllD 411 (456)
-.+.+||=+|||-=+.+...+-.-.+..+|+-+..+.++.+.+.+.+ +-.+ +.++..+ ++... ...+|.|+.
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~---~~~~-~~~~~~~--~~~~~-~~~~DivI~- 81 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF---GGVN-IEAIPLE--DLEEA-LQEADIVIN- 81 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH---TGCS-EEEEEGG--GHCHH-HHTESEEEE-
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc---Cccc-cceeeHH--HHHHH-HhhCCeEEE-
Confidence 35889999999654443322222224457999999999988877766 2222 4444333 22211 146898888
Q ss_pred CCCCCCcc
Q 012783 412 APCSGLGV 419 (456)
Q Consensus 412 aPCSg~G~ 419 (456)
|++.|.
T Consensus 82 --aT~~~~ 87 (135)
T PF01488_consen 82 --ATPSGM 87 (135)
T ss_dssp ---SSTTS
T ss_pred --ecCCCC
Confidence 555554
No 359
>PRK08267 short chain dehydrogenase; Provisional
Probab=55.25 E-value=47 Score=31.63 Aligned_cols=75 Identities=23% Similarity=0.073 Sum_probs=48.4
Q ss_pred eEEEEcCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc----------cCCCC
Q 012783 336 SIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD----------NSTVK 404 (456)
Q Consensus 336 ~VLDlcAGpGgkt~~la~~~~~~-g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~----------~~~~~ 404 (456)
+||-.| |+|+.+..++..+... .+|+.++.+.+.++.+.+.+. + ..+.++.+|..+... ...++
T Consensus 3 ~vlItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~--~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 3 SIFITG-AASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A--GNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred EEEEeC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C--CceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 455555 4577888877765433 489999999888777655443 2 237788888865321 00357
Q ss_pred ccEEEEcCCCC
Q 012783 405 CDKVLLDAPCS 415 (456)
Q Consensus 405 fD~VllDaPCS 415 (456)
+|.|+..+-..
T Consensus 78 id~vi~~ag~~ 88 (260)
T PRK08267 78 LDVLFNNAGIL 88 (260)
T ss_pred CCEEEECCCCC
Confidence 89999865443
No 360
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=55.22 E-value=23 Score=29.61 Aligned_cols=53 Identities=25% Similarity=0.300 Sum_probs=32.3
Q ss_pred eEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEc
Q 012783 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (456)
Q Consensus 336 ~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllD 411 (456)
+|| +|||.|..|..+++.+ ++.++..|++ +++......++.... ..+|.|++=
T Consensus 2 ~Il-l~C~~GaSSs~la~km-------------------~~~a~~~gi~--~~i~a~~~~e~~~~~-~~~Dvill~ 54 (99)
T cd05565 2 NVL-VLCAGGGTSGLLANAL-------------------NKGAKERGVP--LEAAAGAYGSHYDMI-PDYDLVILA 54 (99)
T ss_pred EEE-EECCCCCCHHHHHHHH-------------------HHHHHHCCCc--EEEEEeeHHHHHHhc-cCCCEEEEc
Confidence 355 4558887777777654 3455667775 555555555554433 467887773
No 361
>PRK06196 oxidoreductase; Provisional
Probab=55.11 E-value=66 Score=31.90 Aligned_cols=76 Identities=14% Similarity=0.115 Sum_probs=50.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~ 402 (456)
.|.+||=.| |+|+.+.+++..+.. ..+|+.++.+.++++.+.+.+. . +.++.+|..+... ...
T Consensus 25 ~~k~vlITG-asggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~-----~-v~~~~~Dl~d~~~v~~~~~~~~~~~ 97 (315)
T PRK06196 25 SGKTAIVTG-GYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID-----G-VEVVMLDLADLESVRAFAERFLDSG 97 (315)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----h-CeEEEccCCCHHHHHHHHHHHHhcC
Confidence 356777666 567888888876643 3489999999887766554443 1 5567888765421 112
Q ss_pred CCccEEEEcCCCC
Q 012783 403 VKCDKVLLDAPCS 415 (456)
Q Consensus 403 ~~fD~VllDaPCS 415 (456)
+..|.|+..+...
T Consensus 98 ~~iD~li~nAg~~ 110 (315)
T PRK06196 98 RRIDILINNAGVM 110 (315)
T ss_pred CCCCEEEECCCCC
Confidence 5689999987543
No 362
>PRK05867 short chain dehydrogenase; Provisional
Probab=54.68 E-value=79 Score=29.95 Aligned_cols=79 Identities=13% Similarity=0.021 Sum_probs=53.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~ 402 (456)
.|..||=.|+ +|+.+..++..+-. ..+|+.++.+.+.++.+.+.++..+. .+.++..|..+... ...
T Consensus 8 ~~k~vlVtGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 8 HGKRALITGA-STGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGG--KVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC--eEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 3677887776 45677777776543 35899999999988888777766552 36778888765321 012
Q ss_pred CCccEEEEcCCC
Q 012783 403 VKCDKVLLDAPC 414 (456)
Q Consensus 403 ~~fD~VllDaPC 414 (456)
+++|.++..+-.
T Consensus 85 g~id~lv~~ag~ 96 (253)
T PRK05867 85 GGIDIAVCNAGI 96 (253)
T ss_pred CCCCEEEECCCC
Confidence 478999887643
No 363
>PRK06940 short chain dehydrogenase; Provisional
Probab=54.52 E-value=54 Score=31.87 Aligned_cols=75 Identities=17% Similarity=0.120 Sum_probs=51.2
Q ss_pred eEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc--------cCCCCccE
Q 012783 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD--------NSTVKCDK 407 (456)
Q Consensus 336 ~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~--------~~~~~fD~ 407 (456)
.+|=.|| |+.+.++++.+....+|+.+|.+...++.+.+.++..|. .+.++..|...... ...+.+|.
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF--DVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 4554453 689999999887567899999998888777666655443 36677888765321 01246899
Q ss_pred EEEcCCC
Q 012783 408 VLLDAPC 414 (456)
Q Consensus 408 VllDaPC 414 (456)
++..+-.
T Consensus 80 li~nAG~ 86 (275)
T PRK06940 80 LVHTAGV 86 (275)
T ss_pred EEECCCc
Confidence 9887643
No 364
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=54.38 E-value=23 Score=34.03 Aligned_cols=39 Identities=21% Similarity=0.160 Sum_probs=27.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHH
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRIL 374 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l 374 (456)
+..+++|..||+|..+..+.. ....|+.+|++..-+...
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~---~~~~vi~ND~~~~l~~~~ 58 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQ---PGKRVIINDINPDLINFW 58 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC------SSEEEEEES-HHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhcc---cccceeeeechHHHHHHH
Confidence 689999999999999887765 357899999998755433
No 365
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=54.17 E-value=34 Score=28.79 Aligned_cols=53 Identities=17% Similarity=0.057 Sum_probs=32.5
Q ss_pred eEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccC-CCCccEEEE
Q 012783 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLL 410 (456)
Q Consensus 336 ~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~-~~~fD~Vll 410 (456)
+|| +|||.|.-|..++..+ ++.++..|++ +.+...+..++.... ...||.|++
T Consensus 3 kIL-lvCg~G~STSlla~k~-------------------k~~~~e~gi~--~~i~a~~~~e~~~~~~~~~~DvIll 56 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAKKT-------------------TEYLKEQGKD--IEVDAITATEGEKAIAAAEYDLYLV 56 (104)
T ss_pred EEE-EECCCchHHHHHHHHH-------------------HHHHHHCCCc--eEEEEecHHHHHHhhccCCCCEEEE
Confidence 455 7888888777666542 4556667775 555555555544321 235788887
No 366
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.04 E-value=69 Score=29.85 Aligned_cols=76 Identities=13% Similarity=0.104 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~ 402 (456)
.+.+||=.|++ |+.+..+++.+.. ...|++++.+.+.+..+.+.+...+ .+.++.+|..+... ...
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG---NIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 36788888874 7788888776643 3489999999988877655554332 26777888764321 011
Q ss_pred CCccEEEEcC
Q 012783 403 VKCDKVLLDA 412 (456)
Q Consensus 403 ~~fD~VllDa 412 (456)
+.+|.|+..+
T Consensus 80 ~~id~ii~~a 89 (238)
T PRK05786 80 NAIDGLVVTV 89 (238)
T ss_pred CCCCEEEEcC
Confidence 3578888755
No 367
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=53.90 E-value=54 Score=31.90 Aligned_cols=52 Identities=17% Similarity=0.128 Sum_probs=33.8
Q ss_pred hcCCCCCCeEEEEcCCC-chHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCC
Q 012783 328 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384 (456)
Q Consensus 328 ~l~~~~g~~VLDlcAGp-Ggkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~ 384 (456)
.+...+|++||=.|+|+ |..++++|+.+ +...|+++|.++++++.+++ +|.+
T Consensus 115 ~~~~~~g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~~----~Ga~ 167 (280)
T TIGR03366 115 AAGDLKGRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELALS----FGAT 167 (280)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----cCCc
Confidence 34556899999887643 22334455554 22358999999998876654 6764
No 368
>PRK08114 cystathionine beta-lyase; Provisional
Probab=53.82 E-value=51 Score=34.52 Aligned_cols=88 Identities=9% Similarity=-0.061 Sum_probs=57.2
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEE-eCCHHHHHHHHHHHHHcCCCceEEEEe-cccccccccCCCCccEE
Q 012783 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAI-DINKGRLRILNETAKLHQVNSVIRTIH-ADLRTFADNSTVKCDKV 408 (456)
Q Consensus 331 ~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~Av-Dis~~rl~~l~~n~~r~g~~~~V~~~~-~Da~~~~~~~~~~fD~V 408 (456)
+..|+..+-..+|.+..++.+...+.+..+|++. +....-...+++.++++|+. +.++. .|...+.......-.+|
T Consensus 74 LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~--v~~vd~~d~~~l~~~l~~~TrlV 151 (395)
T PRK08114 74 LEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVT--TTWFDPLIGADIAKLIQPNTKVV 151 (395)
T ss_pred HhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcE--EEEECCCCHHHHHHhcCCCceEE
Confidence 4557788888888888887776666666677765 45556666677778888875 44443 23323322222345688
Q ss_pred EEcCCCCCCccc
Q 012783 409 LLDAPCSGLGVL 420 (456)
Q Consensus 409 llDaPCSg~G~i 420 (456)
+++.|++-+|.+
T Consensus 152 ~~EtpsNp~~~v 163 (395)
T PRK08114 152 FLESPGSITMEV 163 (395)
T ss_pred EEECCCCCCCEe
Confidence 888888877764
No 369
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=53.52 E-value=54 Score=32.67 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=35.6
Q ss_pred HHhcCCCCCCeEEEEcCCCchHH---HHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012783 326 VAVVDPQPGQSIVDCCAAPGGKT---LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (456)
Q Consensus 326 ~~~l~~~~g~~VLDlcAGpGgkt---~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~ 385 (456)
...+.+++|++||=.|+ |+.+ .++|..++ ...|+++|.++++.+.++ .+|.+.
T Consensus 156 l~~~~~~~g~~vlV~G~--G~vG~~~~~~ak~~G-~~~vi~~~~~~~~~~~~~----~~ga~~ 211 (339)
T cd08239 156 LRRVGVSGRDTVLVVGA--GPVGLGALMLARALG-AEDVIGVDPSPERLELAK----ALGADF 211 (339)
T ss_pred HHhcCCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHH----HhCCCE
Confidence 34466788999998865 4443 45566543 234999999999887664 457653
No 370
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.42 E-value=72 Score=29.85 Aligned_cols=78 Identities=18% Similarity=0.132 Sum_probs=52.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~ 402 (456)
++.++|=.|+ .|+.+..+++.+.. ..+|+.+|.++.+++.+.+.++..+. .+.++..|...... ...
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGT--EVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4678887665 57778877775543 35799999999888877777766543 36677888654211 011
Q ss_pred CCccEEEEcCC
Q 012783 403 VKCDKVLLDAP 413 (456)
Q Consensus 403 ~~fD~VllDaP 413 (456)
+.+|.|+..+.
T Consensus 81 ~~id~vi~~ag 91 (253)
T PRK08217 81 GQLNGLINNAG 91 (253)
T ss_pred CCCCEEEECCC
Confidence 46899988654
No 371
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=53.38 E-value=57 Score=30.78 Aligned_cols=82 Identities=11% Similarity=-0.016 Sum_probs=53.1
Q ss_pred EEEEcCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCCCCcc
Q 012783 337 IVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTVKCD 406 (456)
Q Consensus 337 VLDlcAGpGgkt~~la~~~~-~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~~~fD 406 (456)
||=.| |.|+.+..++..+- ...+|+.++.+...++.+.+.+...+. .+.++.+|...... ...+..|
T Consensus 3 ~lItG-~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id 79 (254)
T TIGR02415 3 ALVTG-GAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGG--KAVAYKLDVSDKDQVFSAIDQAAEKFGGFD 79 (254)
T ss_pred EEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 34444 56788887776653 335899999998888777666665553 36778888764321 0124679
Q ss_pred EEEEcCCCCCCcccc
Q 012783 407 KVLLDAPCSGLGVLS 421 (456)
Q Consensus 407 ~VllDaPCSg~G~ir 421 (456)
.|+..+.....|.+.
T Consensus 80 ~vi~~ag~~~~~~~~ 94 (254)
T TIGR02415 80 VMVNNAGVAPITPIL 94 (254)
T ss_pred EEEECCCcCCCCCcc
Confidence 999988765555443
No 372
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=53.34 E-value=99 Score=29.55 Aligned_cols=81 Identities=12% Similarity=0.005 Sum_probs=53.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~-~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~ 402 (456)
.+.+||=.|++ |+.+..++..+- ...+|+.++.+...++.+.+.++..+. .+.++..|...... ...
T Consensus 9 ~~k~~lItGa~-~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 9 KGKIALITGAS-YGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGI--EAHGYVCDVTDEDGVQAMVSQIEKEV 85 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 45667777665 456666665443 345888899999988888877776654 36778888865321 012
Q ss_pred CCccEEEEcCCCCC
Q 012783 403 VKCDKVLLDAPCSG 416 (456)
Q Consensus 403 ~~fD~VllDaPCSg 416 (456)
+.+|.|+..+-..+
T Consensus 86 ~~id~li~~ag~~~ 99 (265)
T PRK07097 86 GVIDILVNNAGIIK 99 (265)
T ss_pred CCCCEEEECCCCCC
Confidence 46899998765443
No 373
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=53.21 E-value=59 Score=31.82 Aligned_cols=43 Identities=14% Similarity=0.047 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHH
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA 378 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~ 378 (456)
....||++|+|+|--++.+|... ...|+.-|. +..+..++.|.
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~-~~~~~~L~~~~ 128 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDL-PKVVENLKFNR 128 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh--cceeccCCc-hhhHHHHHHhh
Confidence 35679999999997777776653 456665565 44455555553
No 374
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=52.70 E-value=58 Score=31.25 Aligned_cols=78 Identities=12% Similarity=-0.007 Sum_probs=49.4
Q ss_pred CCCeEEEEcCCC-chHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cC
Q 012783 333 PGQSIVDCCAAP-GGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NS 401 (456)
Q Consensus 333 ~g~~VLDlcAGp-Ggkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~ 401 (456)
.|..||-.|++. +|.+..+|..+-. ...|+.++.+....+.+++..+..+ . +.++..|..+... ..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~--~-~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD--A-PIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc--c-ceEEecCcCCHHHHHHHHHHHHHH
Confidence 467899999988 4888888876543 3578888888654444444433333 2 3466778764321 11
Q ss_pred CCCccEEEEcCC
Q 012783 402 TVKCDKVLLDAP 413 (456)
Q Consensus 402 ~~~fD~VllDaP 413 (456)
.+..|.++.++-
T Consensus 86 ~g~ld~lv~nAg 97 (258)
T PRK07533 86 WGRLDFLLHSIA 97 (258)
T ss_pred cCCCCEEEEcCc
Confidence 257899998763
No 375
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.83 E-value=1.6e+02 Score=29.07 Aligned_cols=85 Identities=16% Similarity=0.141 Sum_probs=56.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcC-CCceEEEEeCCHHH------HHHHHHH---HHHcCCCceEEEEecccccccc---
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGR------LRILNET---AKLHQVNSVIRTIHADLRTFAD--- 399 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~-~~g~V~AvDis~~r------l~~l~~n---~~r~g~~~~V~~~~~Da~~~~~--- 399 (456)
...+||-+|=|-=.++..|+...+ ..+.|+|...+..- ...+++| ++++|.. .+...|++.+..
T Consensus 56 ~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~---I~h~Vdv~sl~~~~~ 132 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGT---ILHGVDVTSLKFHAD 132 (282)
T ss_pred ccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCc---eEecccceeEEeccc
Confidence 457888888888888888888876 45667666554433 1223344 5677765 234445554322
Q ss_pred cCCCCccEEEEcCCCCCCccc
Q 012783 400 NSTVKCDKVLLDAPCSGLGVL 420 (456)
Q Consensus 400 ~~~~~fD~VllDaPCSg~G~i 420 (456)
...+.||.|+.+-|-+|.|.-
T Consensus 133 ~~~~~~d~IiFNFPH~G~g~~ 153 (282)
T KOG4174|consen 133 LRLQRYDNIIFNFPHSGKGIK 153 (282)
T ss_pred ccccccceEEEcCCCCCCCcc
Confidence 223689999999999999985
No 376
>PRK07340 ornithine cyclodeaminase; Validated
Probab=51.81 E-value=1.2e+02 Score=30.40 Aligned_cols=87 Identities=10% Similarity=-0.003 Sum_probs=58.6
Q ss_pred hHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHH-cCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccc
Q 012783 320 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASC-LSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (456)
Q Consensus 320 ~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~-~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~ 398 (456)
..|.+.+..|......+|+-+|||.=+.....+-. ..+..+|..++.++++.+.+.+.++..++. + ...|..+..
T Consensus 111 A~sala~~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~--~--~~~~~~~av 186 (304)
T PRK07340 111 AVSLLAARTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPT--A--EPLDGEAIP 186 (304)
T ss_pred HHHHHHHHHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCe--e--EECCHHHHh
Confidence 45667788887777889999999876665443322 234468999999999999888887755432 2 233332221
Q ss_pred ccCCCCccEEEEcCCC
Q 012783 399 DNSTVKCDKVLLDAPC 414 (456)
Q Consensus 399 ~~~~~~fD~VllDaPC 414 (456)
...|+|+.=.|+
T Consensus 187 ----~~aDiVitaT~s 198 (304)
T PRK07340 187 ----EAVDLVVTATTS 198 (304)
T ss_pred ----hcCCEEEEccCC
Confidence 468999985554
No 377
>PRK07677 short chain dehydrogenase; Provisional
Probab=51.71 E-value=1e+02 Score=29.08 Aligned_cols=78 Identities=15% Similarity=0.115 Sum_probs=50.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~~ 403 (456)
|.++|=.|+ .|+.+..++..+.. ..+|+.++.+...++.+.+.++..+ ..+.++..|....... ..+
T Consensus 1 ~k~~lItG~-s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 1 EKVVIITGG-SSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 346675555 55677777665432 3589999999988877777666554 2367888887542110 114
Q ss_pred CccEEEEcCCC
Q 012783 404 KCDKVLLDAPC 414 (456)
Q Consensus 404 ~fD~VllDaPC 414 (456)
..|.|+..+.+
T Consensus 78 ~id~lI~~ag~ 88 (252)
T PRK07677 78 RIDALINNAAG 88 (252)
T ss_pred CccEEEECCCC
Confidence 68999987654
No 378
>PRK07109 short chain dehydrogenase; Provisional
Probab=51.24 E-value=1.3e+02 Score=30.32 Aligned_cols=80 Identities=15% Similarity=0.040 Sum_probs=55.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~ 402 (456)
.+..||=.| |+|+.+..+++.+-. ..+|+.++.+++.++.+.+.++..|.. +.++..|..+.... ..
T Consensus 7 ~~k~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~--~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 7 GRQVVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGE--ALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEEecCCCHHHHHHHHHHHHHHC
Confidence 355666665 567788887776533 358999999999998888888776653 67788887653210 12
Q ss_pred CCccEEEEcCCCC
Q 012783 403 VKCDKVLLDAPCS 415 (456)
Q Consensus 403 ~~fD~VllDaPCS 415 (456)
+.+|.++..+-.+
T Consensus 84 g~iD~lInnAg~~ 96 (334)
T PRK07109 84 GPIDTWVNNAMVT 96 (334)
T ss_pred CCCCEEEECCCcC
Confidence 4789999876543
No 379
>PRK07326 short chain dehydrogenase; Provisional
Probab=51.09 E-value=51 Score=30.70 Aligned_cols=76 Identities=17% Similarity=0.095 Sum_probs=50.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~ 402 (456)
.+..||=.| |+|+.+..++..+.. ..+|++++.++..+..+.+.+... ..+.++.+|..+.... ..
T Consensus 5 ~~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (237)
T PRK07326 5 KGKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAF 80 (237)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 356788777 478888888776543 348999999988877766655432 2367788887543210 11
Q ss_pred CCccEEEEcC
Q 012783 403 VKCDKVLLDA 412 (456)
Q Consensus 403 ~~fD~VllDa 412 (456)
+.+|.|+..+
T Consensus 81 ~~~d~vi~~a 90 (237)
T PRK07326 81 GGLDVLIANA 90 (237)
T ss_pred CCCCEEEECC
Confidence 3689888754
No 380
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=51.08 E-value=43 Score=33.78 Aligned_cols=48 Identities=13% Similarity=0.041 Sum_probs=33.0
Q ss_pred CCCCCeEEEEcCCC-chHHHHHHHHcCCCceEEEEeC---CHHHHHHHHHHHHHcCCC
Q 012783 331 PQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDI---NKGRLRILNETAKLHQVN 384 (456)
Q Consensus 331 ~~~g~~VLDlcAGp-Ggkt~~la~~~~~~g~V~AvDi---s~~rl~~l~~n~~r~g~~ 384 (456)
+++|++||=.|+|+ |..+.++|..++ .+|++++. ++++++.++ ++|.+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~----~~Ga~ 221 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVE----ELGAT 221 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHH----HcCCE
Confidence 56899999888754 334566777653 37999987 677777654 46664
No 381
>PRK08339 short chain dehydrogenase; Provisional
Probab=50.43 E-value=1.3e+02 Score=28.99 Aligned_cols=78 Identities=21% Similarity=0.188 Sum_probs=50.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc--------CCC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--------STV 403 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~-~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~--------~~~ 403 (456)
.|..+|=.|++ ||.+..+++.+- ...+|+.++.+...++.+.+.++... ...+.++..|..+.... ..+
T Consensus 7 ~~k~~lItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 7 SGKLAFTTASS-KGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 35667766654 567777776654 34589999999998887777765432 12367788887653210 124
Q ss_pred CccEEEEcC
Q 012783 404 KCDKVLLDA 412 (456)
Q Consensus 404 ~fD~VllDa 412 (456)
.+|.++..+
T Consensus 85 ~iD~lv~na 93 (263)
T PRK08339 85 EPDIFFFST 93 (263)
T ss_pred CCcEEEECC
Confidence 688888754
No 382
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=50.19 E-value=60 Score=33.05 Aligned_cols=53 Identities=25% Similarity=0.309 Sum_probs=35.9
Q ss_pred hcCCCCCCeEEEEcCCC-chHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012783 328 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (456)
Q Consensus 328 ~l~~~~g~~VLDlcAGp-Ggkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~ 385 (456)
...+++|++||=.|+|+ |..+.++|..++ ..+|+++|.++++++.+++ +|.+.
T Consensus 186 ~~~i~~g~~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~ 239 (371)
T cd08281 186 TAGVRPGQSVAVVGLGGVGLSALLGAVAAG-ASQVVAVDLNEDKLALARE----LGATA 239 (371)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHH----cCCce
Confidence 35678899999887643 233445565542 2369999999999887653 67653
No 383
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=50.17 E-value=19 Score=33.99 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=40.5
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHcCCC---ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccc
Q 012783 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQ---GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396 (456)
Q Consensus 331 ~~~g~~VLDlcAGpGgkt~~la~~~~~~---g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~ 396 (456)
-...+.|++.|..-||.++..|..|-.. .+|+++|++-.-+...... ++. |.++.++...
T Consensus 67 ~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~-i~f~egss~d 129 (237)
T COG3510 67 ELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPD-ILFIEGSSTD 129 (237)
T ss_pred hcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCC-eEEEeCCCCC
Confidence 3456899999999999999888866433 4899999986554322211 333 6666666543
No 384
>PRK05717 oxidoreductase; Validated
Probab=50.11 E-value=62 Score=30.75 Aligned_cols=77 Identities=18% Similarity=0.100 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~ 402 (456)
.|.+||=.|+ +|+.+.+++..+.. ..+|+.+|.+..+...+.+ ..+ +.+.++..|..+.... ..
T Consensus 9 ~~k~vlItG~-sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~---~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (255)
T PRK05717 9 NGRVALVTGA-ARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAK---ALG--ENAWFIAMDVADEAQVAAGVAEVLGQF 82 (255)
T ss_pred CCCEEEEeCC-cchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH---HcC--CceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 3567776655 57888888887643 3589999998776654433 233 2367788887653210 12
Q ss_pred CCccEEEEcCCCC
Q 012783 403 VKCDKVLLDAPCS 415 (456)
Q Consensus 403 ~~fD~VllDaPCS 415 (456)
+.+|.|+..+...
T Consensus 83 g~id~li~~ag~~ 95 (255)
T PRK05717 83 GRLDALVCNAAIA 95 (255)
T ss_pred CCCCEEEECCCcc
Confidence 4689999977554
No 385
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=49.99 E-value=47 Score=32.89 Aligned_cols=79 Identities=15% Similarity=0.113 Sum_probs=47.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc--CCCCccEEE
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDKVL 409 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~-g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~--~~~~fD~Vl 409 (456)
.|.+||-.| |+|+.+.+++..+-.. ..|+++..+..............+....+.++.+|..+.... .-..+|.|+
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 356777666 6789999988866443 477777666554433322222223323478888998764321 113579888
Q ss_pred EcC
Q 012783 410 LDA 412 (456)
Q Consensus 410 lDa 412 (456)
.-+
T Consensus 83 h~A 85 (325)
T PLN02989 83 HTA 85 (325)
T ss_pred EeC
Confidence 855
No 386
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=49.92 E-value=1.2e+02 Score=28.37 Aligned_cols=80 Identities=10% Similarity=0.079 Sum_probs=53.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTV 403 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~~-g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~~ 403 (456)
+..||=.|+ +|+.+..++..+-.. .+|+.++.+......+.+.++..+. .+.++.+|...... ...+
T Consensus 3 ~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 3 DKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGG--NAQAFACDITDRDSVDTAVAAAEQALG 79 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 566777765 577888877765444 4899999999888877777665543 36778888764321 0113
Q ss_pred CccEEEEcCCCCC
Q 012783 404 KCDKVLLDAPCSG 416 (456)
Q Consensus 404 ~fD~VllDaPCSg 416 (456)
..|.|+..+....
T Consensus 80 ~~d~vi~~ag~~~ 92 (250)
T TIGR03206 80 PVDVLVNNAGWDK 92 (250)
T ss_pred CCCEEEECCCCCC
Confidence 6799998775543
No 387
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=49.32 E-value=63 Score=30.35 Aligned_cols=44 Identities=20% Similarity=0.266 Sum_probs=34.2
Q ss_pred CCCCCeEEEEcCCC-chHHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q 012783 331 PQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNE 376 (456)
Q Consensus 331 ~~~g~~VLDlcAGp-Ggkt~~la~~~~~~g~V~AvDis~~rl~~l~~ 376 (456)
..+|++||..|+|+ |..+.+++..++ .+|++++.++.+.+.+++
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH
Confidence 37899999999886 556677777653 689999999988776643
No 388
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=49.25 E-value=69 Score=31.49 Aligned_cols=53 Identities=19% Similarity=0.205 Sum_probs=37.6
Q ss_pred HhcCCCCCCeEEEEcC--CCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012783 327 AVVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (456)
Q Consensus 327 ~~l~~~~g~~VLDlcA--GpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~ 385 (456)
....+++|++||=.|+ |-|..++++|..++ .+|++++.++++.+.+++ +|.+.
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s~~~~~~l~~----~Ga~~ 191 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGSDDKVAWLKE----LGFDA 191 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCCE
Confidence 3456788999987764 44556677777753 479999999988777654 67654
No 389
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=49.05 E-value=82 Score=31.25 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=31.5
Q ss_pred cCCCCCCeEEEEcCCC-chHHHHHHHHcCCCceEEEEeCCHHHHHHHH
Q 012783 329 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILN 375 (456)
Q Consensus 329 l~~~~g~~VLDlcAGp-Ggkt~~la~~~~~~g~V~AvDis~~rl~~l~ 375 (456)
+...+|++||-.++|. |..+.++|..++ ...|++++.++++.+.++
T Consensus 161 ~~~~~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~~ 207 (339)
T cd08232 161 AGDLAGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVAR 207 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHH
Confidence 3444889999976654 445666777652 237899999988877543
No 390
>PRK08643 acetoin reductase; Validated
Probab=48.69 E-value=99 Score=29.22 Aligned_cols=75 Identities=15% Similarity=0.075 Sum_probs=51.0
Q ss_pred CeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCCCC
Q 012783 335 QSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTVK 404 (456)
Q Consensus 335 ~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~~~ 404 (456)
..|| +..|+|+.+.++++.+-. ..+|+.++.+...++.+...+...+. .+.++..|...... ...++
T Consensus 3 k~~l-ItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK08643 3 KVAL-VTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGG--KAIAVKADVSDRDQVFAAVRQVVDTFGD 79 (256)
T ss_pred CEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 4555 445677788888876643 34899999999888888777766553 36678888765321 01246
Q ss_pred ccEEEEcC
Q 012783 405 CDKVLLDA 412 (456)
Q Consensus 405 fD~VllDa 412 (456)
.|.|+..+
T Consensus 80 id~vi~~a 87 (256)
T PRK08643 80 LNVVVNNA 87 (256)
T ss_pred CCEEEECC
Confidence 89998855
No 391
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=48.51 E-value=65 Score=35.19 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=26.7
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCC
Q 012783 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDIN 367 (456)
Q Consensus 330 ~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis 367 (456)
.+.+|++|+=+|+||.|.++...-... ...|+.+|..
T Consensus 133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~-G~~V~v~e~~ 169 (564)
T PRK12771 133 APDTGKRVAVIGGGPAGLSAAYHLRRM-GHAVTIFEAG 169 (564)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecC
Confidence 356799999999999998765443322 3478889853
No 392
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=48.26 E-value=54 Score=33.58 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=44.5
Q ss_pred HhcCCCCC----CeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccc
Q 012783 327 AVVDPQPG----QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394 (456)
Q Consensus 327 ~~l~~~~g----~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da 394 (456)
..++...| ...+|+|+|.|..+-++.... + +|-+++.+..-+-....++. .|+. .+-+|.
T Consensus 167 ~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~-~gV~----~v~gdm 230 (342)
T KOG3178|consen 167 KILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA-PGVE----HVAGDM 230 (342)
T ss_pred hhhhhhcccccCceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc-CCcc----eecccc
Confidence 44555555 789999999999999999854 3 48899999998888777765 5543 344554
No 393
>PRK07774 short chain dehydrogenase; Provisional
Probab=48.15 E-value=98 Score=29.04 Aligned_cols=80 Identities=15% Similarity=0.072 Sum_probs=51.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~ 402 (456)
.+.+||=.| |+|+.+.+++..+-. ..+|+.++.++.....+.+.++..+. .+.++..|....... ..
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGG--TAIAVQVDVSDPDSAKAMADATVSAF 81 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 356677555 678888888876532 35899999998777666665554332 356778887654210 11
Q ss_pred CCccEEEEcCCCC
Q 012783 403 VKCDKVLLDAPCS 415 (456)
Q Consensus 403 ~~fD~VllDaPCS 415 (456)
+.+|.|+..+...
T Consensus 82 ~~id~vi~~ag~~ 94 (250)
T PRK07774 82 GGIDYLVNNAAIY 94 (250)
T ss_pred CCCCEEEECCCCc
Confidence 3689999976543
No 394
>PRK07454 short chain dehydrogenase; Provisional
Probab=47.74 E-value=89 Score=29.22 Aligned_cols=76 Identities=13% Similarity=-0.034 Sum_probs=51.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~~ 403 (456)
+.+||=.| |+|+.+..++..+-. ..+|++++.+++....+.+.++..+. .+.++.+|....... ..+
T Consensus 6 ~k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 6 MPRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGV--KAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45677776 478888888876643 34899999999888777766665443 367888998654210 113
Q ss_pred CccEEEEcC
Q 012783 404 KCDKVLLDA 412 (456)
Q Consensus 404 ~fD~VllDa 412 (456)
..|.|+..+
T Consensus 83 ~id~lv~~a 91 (241)
T PRK07454 83 CPDVLINNA 91 (241)
T ss_pred CCCEEEECC
Confidence 578888743
No 395
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=47.70 E-value=58 Score=26.65 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=29.8
Q ss_pred EcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEcCC
Q 012783 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413 (456)
Q Consensus 340 lcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllDaP 413 (456)
++||.|.-|..++.. .+++.++..|++ +++.+.+..++.... ..+|.|+.=+|
T Consensus 7 vvCgsG~~TS~m~~~------------------ki~~~l~~~gi~--~~v~~~~~~e~~~~~-~~~D~iv~t~~ 59 (94)
T PRK10310 7 VACGGAVATSTMAAE------------------EIKELCQSHNIP--VELIQCRVNEIETYM-DGVHLICTTAR 59 (94)
T ss_pred EECCCchhHHHHHHH------------------HHHHHHHHCCCe--EEEEEecHHHHhhhc-CCCCEEEECCc
Confidence 577888766666432 234555566664 455555655544322 35677766444
No 396
>PLN02540 methylenetetrahydrofolate reductase
Probab=47.52 E-value=40 Score=36.98 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=51.1
Q ss_pred CCeEEEEcCCCch----HHHHHHHHcCCC------ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccc
Q 012783 334 GQSIVDCCAAPGG----KTLYMASCLSGQ------GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395 (456)
Q Consensus 334 g~~VLDlcAGpGg----kt~~la~~~~~~------g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~ 395 (456)
+-..+|+.-|+|| +|+.+|..+.+. -+++|.|.+...++..-..++.+|+.| |-.+.||-.
T Consensus 28 ~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~~L~~a~~~GIrN-ILALrGDpp 98 (565)
T PLN02540 28 GPLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTCTNMPVEKIDHALETIKSNGIQN-ILALRGDPP 98 (565)
T ss_pred CCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCE-EEEECCCCC
Confidence 4468889888887 678888876544 489999999999999999999999998 788999964
No 397
>PLN02740 Alcohol dehydrogenase-like
Probab=47.51 E-value=75 Score=32.54 Aligned_cols=51 Identities=18% Similarity=0.170 Sum_probs=35.5
Q ss_pred hcCCCCCCeEEEEcCCCchHH---HHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012783 328 VVDPQPGQSIVDCCAAPGGKT---LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (456)
Q Consensus 328 ~l~~~~g~~VLDlcAGpGgkt---~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~ 385 (456)
...+++|++||=.|+ |+.+ +++|+.++ ..+|+++|.++++++.+++ +|.+.
T Consensus 193 ~~~~~~g~~VlV~G~--G~vG~~a~q~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~ 246 (381)
T PLN02740 193 TANVQAGSSVAIFGL--GAVGLAVAEGARARG-ASKIIGVDINPEKFEKGKE----MGITD 246 (381)
T ss_pred ccCCCCCCEEEEECC--CHHHHHHHHHHHHCC-CCcEEEEcCChHHHHHHHH----cCCcE
Confidence 356788999999876 4444 44555542 2369999999999887754 67653
No 398
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=47.24 E-value=79 Score=31.57 Aligned_cols=54 Identities=24% Similarity=0.308 Sum_probs=36.0
Q ss_pred HhcCCCCCCeEEEEcCCC-chHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012783 327 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (456)
Q Consensus 327 ~~l~~~~g~~VLDlcAGp-Ggkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~ 385 (456)
.....++|++||-.++|. |..++++|+.++ ...|++++.++++...+++ +|.+.
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~ 210 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFG-ATKVVVTDIDPSRLEFAKE----LGATH 210 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCCcE
Confidence 456678899999876543 445566676653 2238999988888776644 46654
No 399
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=47.13 E-value=40 Score=36.51 Aligned_cols=104 Identities=14% Similarity=0.094 Sum_probs=59.2
Q ss_pred HHHHHHHhcCCCCceeccCCCceEEEeC-CCcchhcccccccccccccchHHHHHH------HhcCCCCCCeEEEEcCCC
Q 012783 272 ADLVMQLNLLKVPHELSLHLDEFIRVKT-GLQNVIQAGLLKEGLCAVQDESAGLVV------AVVDPQPGQSIVDCCAAP 344 (456)
Q Consensus 272 ~~~~~~L~~~gi~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~G~~~vQd~ss~lv~------~~l~~~~g~~VLDlcAGp 344 (456)
.++.+.|.+.|+..---... -++.. +.-+......--.|+-.++..+..+-. .++...++++|+=+|||+
T Consensus 99 ~~l~~~l~~~~it~ia~e~v---pr~sraq~~d~lssma~IAGy~Av~~aa~~~~~~~~g~~taaG~~pg~kVlViGaG~ 175 (509)
T PRK09424 99 PELLEKLAARGVTVLAMDAV---PRISRAQSLDALSSMANIAGYRAVIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGV 175 (509)
T ss_pred HHHHHHHHHcCCEEEEeecc---cccccCCCcccccchhhhhHHHHHHHHHHHhcccCCCceeccCCcCCCEEEEECCcH
Confidence 57888888888753211111 11111 110112222222355455543333211 112356899999999998
Q ss_pred chH-HHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCC
Q 012783 345 GGK-TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384 (456)
Q Consensus 345 Ggk-t~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~ 384 (456)
=|. ++..|..++ ..|+++|.++++++.+++ +|.+
T Consensus 176 iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA~ 210 (509)
T PRK09424 176 AGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGAE 210 (509)
T ss_pred HHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCe
Confidence 665 556677664 379999999999987665 5654
No 400
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=47.00 E-value=1e+02 Score=29.23 Aligned_cols=75 Identities=16% Similarity=0.072 Sum_probs=48.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~~-g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~~ 403 (456)
+.+||=.| |+|+.+.+++..+-.. .+|+.+|.+...+..+.+.+ +. .+.++..|..+.... ..+
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~---~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEI---GP--AAIAVSLDVTRQDSIDRIVAAAVERFG 79 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh---CC--ceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45666555 6778888888776433 48999999988877655433 22 366778887543210 114
Q ss_pred CccEEEEcCCC
Q 012783 404 KCDKVLLDAPC 414 (456)
Q Consensus 404 ~fD~VllDaPC 414 (456)
..|.++..+..
T Consensus 80 ~id~li~~ag~ 90 (257)
T PRK07067 80 GIDILFNNAAL 90 (257)
T ss_pred CCCEEEECCCc
Confidence 67988885543
No 401
>PRK08263 short chain dehydrogenase; Provisional
Probab=46.95 E-value=1.1e+02 Score=29.58 Aligned_cols=81 Identities=16% Similarity=0.036 Sum_probs=50.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~-~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~~ 403 (456)
+..||=.| |+|+.+.+++..+. ....|++++.+...++.+.+.. .+.+.++..|..+.... ..+
T Consensus 3 ~k~vlItG-asg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 76 (275)
T PRK08263 3 EKVWFITG-ASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY-----GDRLLPLALDVTDRAAVFAAVETAVEHFG 76 (275)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----cCCeeEEEccCCCHHHHHHHHHHHHHHcC
Confidence 34566666 57888888887663 3457999999988776554432 22356777887643210 124
Q ss_pred CccEEEEcCCCCCCccc
Q 012783 404 KCDKVLLDAPCSGLGVL 420 (456)
Q Consensus 404 ~fD~VllDaPCSg~G~i 420 (456)
.+|.|+..+-....+.+
T Consensus 77 ~~d~vi~~ag~~~~~~~ 93 (275)
T PRK08263 77 RLDIVVNNAGYGLFGMI 93 (275)
T ss_pred CCCEEEECCCCcccccc
Confidence 68999886644433433
No 402
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=46.92 E-value=65 Score=31.73 Aligned_cols=81 Identities=16% Similarity=0.125 Sum_probs=48.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc--CCCCccEEEE
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSGQG-LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDKVLL 410 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~~g-~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~--~~~~fD~Vll 410 (456)
+.+||=.| |+|..+.+++..+-..| +|++++.+..............+....+.++.+|..+.... .-..+|.|+.
T Consensus 4 ~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 4 GKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 45666555 47999999888765444 78888776554332222211122223478889998653211 1135799988
Q ss_pred cCCCC
Q 012783 411 DAPCS 415 (456)
Q Consensus 411 DaPCS 415 (456)
-+...
T Consensus 83 ~A~~~ 87 (322)
T PLN02662 83 TASPF 87 (322)
T ss_pred eCCcc
Confidence 77654
No 403
>PRK06125 short chain dehydrogenase; Provisional
Probab=46.47 E-value=1.6e+02 Score=27.90 Aligned_cols=77 Identities=13% Similarity=0.081 Sum_probs=50.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc-----CCCCccE
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-----STVKCDK 407 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~-----~~~~fD~ 407 (456)
+.+||=.|+ +|+.+..++..+.. ..+|++++.+++.++.+.+.++...-. .+.++..|....... ..+..|.
T Consensus 7 ~k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 7 GKRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGV-DVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCC-ceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 566776664 66777777765533 348999999999888777766654222 366778887643210 1246898
Q ss_pred EEEcC
Q 012783 408 VLLDA 412 (456)
Q Consensus 408 VllDa 412 (456)
++..+
T Consensus 85 lv~~a 89 (259)
T PRK06125 85 LVNNA 89 (259)
T ss_pred EEECC
Confidence 88754
No 404
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=46.26 E-value=17 Score=36.08 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHH
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLR 372 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~ 372 (456)
.|.+|||+|||+|-....+... +...+...|.+.+-++
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~--~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVK--GAVSVHFQDFNAEVLR 153 (282)
T ss_pred cCceeEecCCcccccchhhhhh--ccceeeeEecchhhee
Confidence 5899999999999998887754 3468889999887664
No 405
>PRK12829 short chain dehydrogenase; Provisional
Probab=46.06 E-value=1e+02 Score=29.20 Aligned_cols=80 Identities=16% Similarity=0.117 Sum_probs=52.5
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc-------
Q 012783 329 VDPQPGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN------- 400 (456)
Q Consensus 329 l~~~~g~~VLDlcAGpGgkt~~la~~~~-~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~------- 400 (456)
+...++.+||=.|+. |+.+.++++.+- ....|++++.+++.++.+.+..... .+.++..|.......
T Consensus 6 ~~~~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~ 80 (264)
T PRK12829 6 LKPLDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA----KVTATVADVADPAQVERVFDTA 80 (264)
T ss_pred hhccCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC----ceEEEEccCCCHHHHHHHHHHH
Confidence 334567899988775 778887777653 3458999999988777665544322 357778887653210
Q ss_pred --CCCCccEEEEcCC
Q 012783 401 --STVKCDKVLLDAP 413 (456)
Q Consensus 401 --~~~~fD~VllDaP 413 (456)
..+++|.|+..+.
T Consensus 81 ~~~~~~~d~vi~~ag 95 (264)
T PRK12829 81 VERFGGLDVLVNNAG 95 (264)
T ss_pred HHHhCCCCEEEECCC
Confidence 1146899988654
No 406
>PRK07024 short chain dehydrogenase; Provisional
Probab=45.68 E-value=46 Score=31.75 Aligned_cols=74 Identities=15% Similarity=0.058 Sum_probs=48.6
Q ss_pred CeEEEEcCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CCCC
Q 012783 335 QSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STVK 404 (456)
Q Consensus 335 ~~VLDlcAGpGgkt~~la~~~~~~-g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~~~ 404 (456)
.+||=.| |+|+.+..++..+... ..|+.+|.+.+.++.+.+.+...+ .+.++..|..+.... ..+.
T Consensus 3 ~~vlItG-as~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~i~~~~~~~~~~~g~ 78 (257)
T PRK07024 3 LKVFITG-ASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAA---RVSVYAADVRDADALAAAAADFIAAHGL 78 (257)
T ss_pred CEEEEEc-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCC---eeEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 3555544 5778888888776433 489999999888776655543322 377888888653210 1245
Q ss_pred ccEEEEcC
Q 012783 405 CDKVLLDA 412 (456)
Q Consensus 405 fD~VllDa 412 (456)
+|.|+..+
T Consensus 79 id~lv~~a 86 (257)
T PRK07024 79 PDVVIANA 86 (257)
T ss_pred CCEEEECC
Confidence 79999865
No 407
>PRK11524 putative methyltransferase; Provisional
Probab=45.47 E-value=27 Score=34.58 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=22.4
Q ss_pred EEEEeccccccccc-CCCCccEEEEcCCCC
Q 012783 387 IRTIHADLRTFADN-STVKCDKVLLDAPCS 415 (456)
Q Consensus 387 V~~~~~Da~~~~~~-~~~~fD~VllDaPCS 415 (456)
.+++++|+..+... ..++||+|++|||.-
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~ 38 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYN 38 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcc
Confidence 46889999875432 246899999999994
No 408
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=45.32 E-value=94 Score=27.04 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=43.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCC--ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~--g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
.+.+|+-+|+ |+.+..++..+... ..|+.+|.++++.+.+.+.+..... .....|.... ...+|.|++
T Consensus 18 ~~~~i~iiG~--G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~~----~~~~Dvvi~ 87 (155)
T cd01065 18 KGKKVLILGA--GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGI----AIAYLDLEEL----LAEADLIIN 87 (155)
T ss_pred CCCEEEEECC--cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccc----ceeecchhhc----cccCCEEEe
Confidence 4678888877 56666666554333 4799999999887766555432211 1111222211 246899998
Q ss_pred cCCCCC
Q 012783 411 DAPCSG 416 (456)
Q Consensus 411 DaPCSg 416 (456)
-.|-+.
T Consensus 88 ~~~~~~ 93 (155)
T cd01065 88 TTPVGM 93 (155)
T ss_pred CcCCCC
Confidence 655543
No 409
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=45.18 E-value=46 Score=34.79 Aligned_cols=73 Identities=23% Similarity=0.192 Sum_probs=49.1
Q ss_pred CeEEEEcCCCchHHHHHHHHcC--CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc--CCCCccEEEE
Q 012783 335 QSIVDCCAAPGGKTLYMASCLS--GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDKVLL 410 (456)
Q Consensus 335 ~~VLDlcAGpGgkt~~la~~~~--~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~--~~~~fD~Vll 410 (456)
.+||=+|| |+.+..+|..+. +.+.|+..|.+.+.+..+...... .++++.-|+...+.. .-..+|+|+.
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~-----~v~~~~vD~~d~~al~~li~~~d~VIn 74 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG-----KVEALQVDAADVDALVALIKDFDLVIN 74 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc-----cceeEEecccChHHHHHHHhcCCEEEE
Confidence 46888888 666555555432 237999999999999888765322 367888887664321 1235699888
Q ss_pred cCCC
Q 012783 411 DAPC 414 (456)
Q Consensus 411 DaPC 414 (456)
=+|-
T Consensus 75 ~~p~ 78 (389)
T COG1748 75 AAPP 78 (389)
T ss_pred eCCc
Confidence 7764
No 410
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=45.09 E-value=2e+02 Score=27.04 Aligned_cols=78 Identities=13% Similarity=0.077 Sum_probs=53.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~-~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~ 402 (456)
.|.+||=.|+ .|+.+..++..+. ....|+.++.+.+.++.+.+.++..+.. +.++..|...... ...
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGA--AEALAFDIADEEAVAAAFARIDAEH 86 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCc--eEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4678887775 6677777776553 3468999999998888777777766543 6778888764321 112
Q ss_pred CCccEEEEcCC
Q 012783 403 VKCDKVLLDAP 413 (456)
Q Consensus 403 ~~fD~VllDaP 413 (456)
+++|.|+..+-
T Consensus 87 ~~id~vi~~ag 97 (256)
T PRK06124 87 GRLDILVNNVG 97 (256)
T ss_pred CCCCEEEECCC
Confidence 46799988653
No 411
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=45.02 E-value=1.4e+02 Score=28.03 Aligned_cols=78 Identities=13% Similarity=0.032 Sum_probs=48.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~-g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~ 402 (456)
.|.+||=.|++ |+.+..+++.+-.. ..|+.++.+. ...+.+.++..+. .+.++..|...... ...
T Consensus 4 ~~k~vlItGas-~gIG~~ia~~l~~~G~~vi~~~r~~--~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (248)
T TIGR01832 4 EGKVALVTGAN-TGLGQGIAVGLAEAGADIVGAGRSE--PSETQQQVEALGR--RFLSLTADLSDIEAIKALVDSAVEEF 78 (248)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCch--HHHHHHHHHhcCC--ceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 36677777774 66788887766544 4788888764 2344455555543 36788888765321 112
Q ss_pred CCccEEEEcCCCC
Q 012783 403 VKCDKVLLDAPCS 415 (456)
Q Consensus 403 ~~fD~VllDaPCS 415 (456)
+.+|.|+..+-..
T Consensus 79 ~~~d~li~~ag~~ 91 (248)
T TIGR01832 79 GHIDILVNNAGII 91 (248)
T ss_pred CCCCEEEECCCCC
Confidence 4689999866443
No 412
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=44.89 E-value=1.8e+02 Score=28.77 Aligned_cols=83 Identities=18% Similarity=0.172 Sum_probs=57.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHc-CCCceEEEEeccccccccc---------C
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLH-QVNSVIRTIHADLRTFADN---------S 401 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~-g~V~AvDis~~rl~~l~~n~~r~-g~~~~V~~~~~Da~~~~~~---------~ 401 (456)
.+.++|=-|| ++|++..+|+.+... ..|+-+-.+++++..+++.++.. |+ .|.++..|....... .
T Consensus 5 ~~~~~lITGA-SsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v--~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 5 KGKTALITGA-SSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGV--EVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred CCcEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCc--eEEEEECcCCChhHHHHHHHHHHhc
Confidence 4556665554 667888888876544 58999999999999999998864 44 378899997654221 1
Q ss_pred CCCccEEEEcCCCCCCcccc
Q 012783 402 TVKCDKVLLDAPCSGLGVLS 421 (456)
Q Consensus 402 ~~~fD~VllDaPCSg~G~ir 421 (456)
...+|..+- |.|.|+..
T Consensus 82 ~~~IdvLVN---NAG~g~~g 98 (265)
T COG0300 82 GGPIDVLVN---NAGFGTFG 98 (265)
T ss_pred CCcccEEEE---CCCcCCcc
Confidence 136788877 55666654
No 413
>PRK05876 short chain dehydrogenase; Provisional
Probab=44.83 E-value=1.9e+02 Score=27.98 Aligned_cols=84 Identities=19% Similarity=0.155 Sum_probs=55.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~ 402 (456)
.|..||=.|+ +|+.+..+++.+.. ..+|+.+|.+...++.+.+.++..+. .+.++..|..+... ...
T Consensus 5 ~~k~vlVTGa-s~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 5 PGRGAVITGG-ASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGF--DVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 3567776665 57788888876643 34789999999888777666665554 36778888765321 012
Q ss_pred CCccEEEEcCCCCCCcc
Q 012783 403 VKCDKVLLDAPCSGLGV 419 (456)
Q Consensus 403 ~~fD~VllDaPCSg~G~ 419 (456)
+..|.|+..+--+..|.
T Consensus 82 g~id~li~nAg~~~~~~ 98 (275)
T PRK05876 82 GHVDVVFSNAGIVVGGP 98 (275)
T ss_pred CCCCEEEECCCcCCCCC
Confidence 46899998765433333
No 414
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=44.63 E-value=1.3e+02 Score=28.28 Aligned_cols=79 Identities=11% Similarity=0.059 Sum_probs=50.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCCCc-eEEE-EeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSGQG-LVYA-IDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 402 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~~g-~V~A-vDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~ 402 (456)
+.+||=.|+ +|+.+.+++..+-..| +|+. .+.+....+.+.+.++..+. .+.++.+|...... ...
T Consensus 4 ~~~vlItGa-~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (250)
T PRK08063 4 GKVALVTGS-SRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGR--KALAVKANVGDVEKIKEMFAQIDEEF 80 (250)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 556775555 6888888888765444 6655 46677777666666665553 36778888765321 011
Q ss_pred CCccEEEEcCCCC
Q 012783 403 VKCDKVLLDAPCS 415 (456)
Q Consensus 403 ~~fD~VllDaPCS 415 (456)
+..|.|+..+..+
T Consensus 81 ~~id~vi~~ag~~ 93 (250)
T PRK08063 81 GRLDVFVNNAASG 93 (250)
T ss_pred CCCCEEEECCCCC
Confidence 3679999977543
No 415
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=44.54 E-value=1.1e+02 Score=30.45 Aligned_cols=78 Identities=18% Similarity=0.154 Sum_probs=50.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~ 402 (456)
.+.+||=.| |+|+.+.+++..+-. ..+|+.++.+..+.+.+.+.+...+ ..+.++..|...... ...
T Consensus 5 ~~k~vlVTG-as~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (322)
T PRK07453 5 AKGTVIITG-ASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPP--DSYTIIHIDLGDLDSVRRFVDDFRALG 81 (322)
T ss_pred CCCEEEEEc-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccC--CceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 355666555 467888888876643 3589999999888776665553222 236778888765321 012
Q ss_pred CCccEEEEcCC
Q 012783 403 VKCDKVLLDAP 413 (456)
Q Consensus 403 ~~fD~VllDaP 413 (456)
...|.|+..+-
T Consensus 82 ~~iD~li~nAg 92 (322)
T PRK07453 82 KPLDALVCNAA 92 (322)
T ss_pred CCccEEEECCc
Confidence 35899999764
No 416
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=44.47 E-value=27 Score=33.88 Aligned_cols=47 Identities=15% Similarity=-0.047 Sum_probs=37.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCCC-------ceEEEEeCCHHHHHHHHHHHHH
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSGQ-------GLVYAIDINKGRLRILNETAKL 380 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~~-------g~V~AvDis~~rl~~l~~n~~r 380 (456)
.-+|+++|+|.|..+..++..+... .+++-+|+|+...+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 3589999999999999999877633 4799999999988887777654
No 417
>PRK09135 pteridine reductase; Provisional
Probab=44.37 E-value=1.3e+02 Score=27.92 Aligned_cols=79 Identities=11% Similarity=-0.031 Sum_probs=50.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcC-CCceEEEEeCC-HHHHHHHHHHHHHcCCCceEEEEeccccccccc---------C
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDIN-KGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 401 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~-~~g~V~AvDis-~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~ 401 (456)
.+.+||=.|| +|+.+.++++.+- ...+|++++.+ ....+.+...+...+-. .+.++.+|..+.... .
T Consensus 5 ~~~~vlItGa-~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (249)
T PRK09135 5 SAKVALITGG-ARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPG-SAAALQADLLDPDALPELVAACVAA 82 (249)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCC-ceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3567888885 6788888887664 34588999875 45555555555444322 367788887653211 0
Q ss_pred CCCccEEEEcCC
Q 012783 402 TVKCDKVLLDAP 413 (456)
Q Consensus 402 ~~~fD~VllDaP 413 (456)
.+..|.|+.-+.
T Consensus 83 ~~~~d~vi~~ag 94 (249)
T PRK09135 83 FGRLDALVNNAS 94 (249)
T ss_pred cCCCCEEEECCC
Confidence 135799998654
No 418
>PLN02780 ketoreductase/ oxidoreductase
Probab=44.05 E-value=76 Score=31.85 Aligned_cols=61 Identities=15% Similarity=0.119 Sum_probs=41.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccc
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~ 395 (456)
|..||=.|| +||.+..+|..+.. +.+|+.++.++++++.+.+.++...-...+..+..|..
T Consensus 53 g~~~lITGA-s~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 53 GSWALVTGP-TDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFS 114 (320)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECC
Confidence 677776665 66778877776643 34899999999999888877765321123555666654
No 419
>PRK06720 hypothetical protein; Provisional
Probab=43.68 E-value=1.5e+02 Score=26.90 Aligned_cols=79 Identities=16% Similarity=0.077 Sum_probs=49.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~-~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~ 402 (456)
.|..+|-.|++ |+.+..++..+. ....|+.+|.+...++...+.+...+.. +.++..|...... ...
T Consensus 15 ~gk~~lVTGa~-~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~--~~~~~~Dl~~~~~v~~~v~~~~~~~ 91 (169)
T PRK06720 15 AGKVAIVTGGG-IGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGE--ALFVSYDMEKQGDWQRVISITLNAF 91 (169)
T ss_pred CCCEEEEecCC-ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc--EEEEEccCCCHHHHHHHHHHHHHHc
Confidence 35667666665 456666665442 3468999999988777666666544532 5567778654321 112
Q ss_pred CCccEEEEcCCC
Q 012783 403 VKCDKVLLDAPC 414 (456)
Q Consensus 403 ~~fD~VllDaPC 414 (456)
+..|.++.++..
T Consensus 92 G~iDilVnnAG~ 103 (169)
T PRK06720 92 SRIDMLFQNAGL 103 (169)
T ss_pred CCCCEEEECCCc
Confidence 568999987654
No 420
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=43.34 E-value=1.7e+02 Score=27.19 Aligned_cols=80 Identities=19% Similarity=0.100 Sum_probs=52.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTV 403 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~~ 403 (456)
+.+||=.|+ +|+.+..++..+-. ..+|++++.+...+..+.+.+...+. .+.++.+|..+... ...+
T Consensus 6 ~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK12826 6 GRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGG--KARARQVDVRDRAALKAAVAAGVEDFG 82 (251)
T ss_pred CCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 567886554 67777777765532 35899999998877776666665543 26788888765321 0113
Q ss_pred CccEEEEcCCCCC
Q 012783 404 KCDKVLLDAPCSG 416 (456)
Q Consensus 404 ~fD~VllDaPCSg 416 (456)
.+|.|+..+...+
T Consensus 83 ~~d~vi~~ag~~~ 95 (251)
T PRK12826 83 RLDILVANAGIFP 95 (251)
T ss_pred CCCEEEECCCCCC
Confidence 6899988775443
No 421
>PRK06141 ornithine cyclodeaminase; Validated
Probab=43.12 E-value=2.1e+02 Score=28.80 Aligned_cols=84 Identities=10% Similarity=0.090 Sum_probs=54.8
Q ss_pred hHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHH-HHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccc
Q 012783 320 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMA-SCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (456)
Q Consensus 320 ~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la-~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~ 398 (456)
..|.+.+.+|......+|+-+|+|.=+.....+ ..+.+..+|+.++.++++.+.+.+.++..|.. +.. ..+.....
T Consensus 111 a~sala~~~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~--~~~-~~~~~~av 187 (314)
T PRK06141 111 AASALAASYLARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFD--AEV-VTDLEAAV 187 (314)
T ss_pred HHHHHHHHHhCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCc--eEE-eCCHHHHH
Confidence 456677788877778899999887666554321 22244568999999999998888877665542 222 23322211
Q ss_pred ccCCCCccEEEE
Q 012783 399 DNSTVKCDKVLL 410 (456)
Q Consensus 399 ~~~~~~fD~Vll 410 (456)
...|+|++
T Consensus 188 ----~~aDIVi~ 195 (314)
T PRK06141 188 ----RQADIISC 195 (314)
T ss_pred ----hcCCEEEE
Confidence 35788765
No 422
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=42.97 E-value=1.4e+02 Score=29.29 Aligned_cols=75 Identities=15% Similarity=0.133 Sum_probs=45.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCC--ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEE
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~--g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~Vll 410 (456)
.+.+||=+|| |+.+..++..+... .+|+.++.+.++.+.+.+.+...+ . +.+ ..+.. . ....+|+|+.
T Consensus 122 ~~k~vlVlGa--Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~--~-~~~-~~~~~---~-~~~~~DivIn 191 (278)
T PRK00258 122 KGKRILILGA--GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG--K-AEL-DLELQ---E-ELADFDLIIN 191 (278)
T ss_pred CCCEEEEEcC--cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--c-eee-cccch---h-ccccCCEEEE
Confidence 4678988887 56666665544333 489999999998887777665332 1 222 11211 1 1246899988
Q ss_pred cCCCCCCccc
Q 012783 411 DAPCSGLGVL 420 (456)
Q Consensus 411 DaPCSg~G~i 420 (456)
|+..|+.
T Consensus 192 ---aTp~g~~ 198 (278)
T PRK00258 192 ---ATSAGMS 198 (278)
T ss_pred ---CCcCCCC
Confidence 5555653
No 423
>PRK08278 short chain dehydrogenase; Provisional
Probab=42.93 E-value=1.1e+02 Score=29.60 Aligned_cols=82 Identities=13% Similarity=0.039 Sum_probs=50.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHH-------HHHHHHHHHHcCCCceEEEEeccccccccc----
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGR-------LRILNETAKLHQVNSVIRTIHADLRTFADN---- 400 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~r-------l~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---- 400 (456)
.+.+||=.|| +|+.+.+++..+.. ...|+.++.+... ++.+.+.++..+. .+.++..|.......
T Consensus 5 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~D~~~~~~i~~~~ 81 (273)
T PRK08278 5 SGKTLFITGA-SRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGG--QALPLVGDVRDEDQVAAAV 81 (273)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHH
Confidence 3556775554 67888888876643 3488888876542 4444444544443 367788887653210
Q ss_pred -----CCCCccEEEEcCCCCCC
Q 012783 401 -----STVKCDKVLLDAPCSGL 417 (456)
Q Consensus 401 -----~~~~fD~VllDaPCSg~ 417 (456)
..+.+|.|+..+.....
T Consensus 82 ~~~~~~~g~id~li~~ag~~~~ 103 (273)
T PRK08278 82 AKAVERFGGIDICVNNASAINL 103 (273)
T ss_pred HHHHHHhCCCCEEEECCCCcCC
Confidence 11478999998755433
No 424
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=42.87 E-value=83 Score=30.12 Aligned_cols=49 Identities=14% Similarity=0.170 Sum_probs=34.5
Q ss_pred HhcCCCCCCeEEEEcCCC-chHHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q 012783 327 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNE 376 (456)
Q Consensus 327 ~~l~~~~g~~VLDlcAGp-Ggkt~~la~~~~~~g~V~AvDis~~rl~~l~~ 376 (456)
....+.+|++||=.++|+ |..+.++|..++. .+|++++.++++++.+++
T Consensus 91 ~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~-~~vi~~~~~~~~~~~~~~ 140 (277)
T cd08255 91 RDAEPRLGERVAVVGLGLVGLLAAQLAKAAGA-REVVGVDPDAARRELAEA 140 (277)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEECCCHHHHHHHHH
Confidence 345678899999887654 4456667777642 249999999998775543
No 425
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=42.71 E-value=1.5e+02 Score=27.15 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=29.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHH
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAK 379 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~-~~g~V~AvDis~~rl~~l~~n~~ 379 (456)
.+.+|+=+|+ +|+.+..++..+. ...+|+.++.+.++++.+.+.+.
T Consensus 27 ~~~~vlVlGg-tG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~ 73 (194)
T cd01078 27 KGKTAVVLGG-TGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLR 73 (194)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH
Confidence 4567777765 3555555444332 23489999999888877766554
No 426
>PRK05993 short chain dehydrogenase; Provisional
Probab=41.73 E-value=1.4e+02 Score=28.86 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=45.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc----------cCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD----------NST 402 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~----------~~~ 402 (456)
+.+||=.|| +|+.+.+++..+.. ..+|++++.+.+.++.+.+ .+ +.++..|..+... ...
T Consensus 4 ~k~vlItGa-sggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~~----~~~~~~Dl~d~~~~~~~~~~~~~~~~ 74 (277)
T PRK05993 4 KRSILITGC-SSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----EG----LEAFQLDYAEPESIAALVAQVLELSG 74 (277)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CC----ceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 456776554 68888888876643 4589999999887765543 23 4567778764321 112
Q ss_pred CCccEEEEcC
Q 012783 403 VKCDKVLLDA 412 (456)
Q Consensus 403 ~~fD~VllDa 412 (456)
+..|.|+..+
T Consensus 75 g~id~li~~A 84 (277)
T PRK05993 75 GRLDALFNNG 84 (277)
T ss_pred CCccEEEECC
Confidence 4679998855
No 427
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.69 E-value=87 Score=29.24 Aligned_cols=97 Identities=18% Similarity=0.209 Sum_probs=58.7
Q ss_pred cccccchHHHHHHHhcCC-CCCCeEEEEcCCCchHHHHHHHHcC----CCceEEEEeCCHHHHHHHHHHHHHcCCCceEE
Q 012783 314 LCAVQDESAGLVVAVVDP-QPGQSIVDCCAAPGGKTLYMASCLS----GQGLVYAIDINKGRLRILNETAKLHQVNSVIR 388 (456)
Q Consensus 314 ~~~vQd~ss~lv~~~l~~-~~g~~VLDlcAGpGgkt~~la~~~~----~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~ 388 (456)
+++-+|.+..++...+.. ..|.+|-=+ +.|--. +-+... +.-+|+-++.+.. ++.+| + .
T Consensus 53 fwy~~eta~~La~e~v~~s~e~~rIacv-S~Psly---~y~k~re~~~~~~~v~lfEfDkR--------Fe~yg-~---e 116 (217)
T KOG3350|consen 53 FWYSDETARKLAAERVEASGEGSRIACV-SCPSLY---VYQKKREIEIPHDQVYLFEFDKR--------FELYG-T---E 116 (217)
T ss_pred hhcCHHHHHHHHHHHHhhcccCceEEEE-eCchHH---hhhhhhhccCCceeEEEEEehhh--------HHhcc-c---e
Confidence 456678888888777654 345444444 445322 111111 3567888888743 44555 2 4
Q ss_pred EEeccccc---ccccCCCCccEEEEcCCCCCCcccccCCCc
Q 012783 389 TIHADLRT---FADNSTVKCDKVLLDAPCSGLGVLSKTCVG 426 (456)
Q Consensus 389 ~~~~Da~~---~~~~~~~~fD~VllDaPCSg~G~irr~p~~ 426 (456)
++.-|... +|....+.||+|+.|||-=+.--++|..+.
T Consensus 117 FvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~t 157 (217)
T KOG3350|consen 117 FVFYDYNCPLDLPDELKAHFDIIVADPPFLSEECLAKTSET 157 (217)
T ss_pred eEEeccCCCCCCHHHHHhcccEEEeCCccccchhhhhhHHH
Confidence 66666543 333345679999999999888777766554
No 428
>PRK09242 tropinone reductase; Provisional
Probab=41.32 E-value=2.7e+02 Score=26.19 Aligned_cols=79 Identities=16% Similarity=0.101 Sum_probs=51.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~ 402 (456)
.|..||=.|+ +|+.+..++..+.. ..+|+.++.+.+.++.+.+++....-...+.++..|...... ...
T Consensus 8 ~~k~~lItGa-~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 8 DGQTALITGA-SKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3667777766 55677777765542 458999999998888777777654212347778888765321 112
Q ss_pred CCccEEEEcC
Q 012783 403 VKCDKVLLDA 412 (456)
Q Consensus 403 ~~fD~VllDa 412 (456)
+++|.|+..+
T Consensus 87 g~id~li~~a 96 (257)
T PRK09242 87 DGLHILVNNA 96 (257)
T ss_pred CCCCEEEECC
Confidence 5689998855
No 429
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.26 E-value=23 Score=32.54 Aligned_cols=82 Identities=17% Similarity=0.142 Sum_probs=48.9
Q ss_pred CCCeEEEEcCCCchH-HHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc--eEEEEecccccccc-cCCCCccEE
Q 012783 333 PGQSIVDCCAAPGGK-TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS--VIRTIHADLRTFAD-NSTVKCDKV 408 (456)
Q Consensus 333 ~g~~VLDlcAGpGgk-t~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~--~V~~~~~Da~~~~~-~~~~~fD~V 408 (456)
.|.+||++|+|--+. ++.+|... +...|.-.|-+++.++.+++-..++-... .+.++.-+...-.. .....||.|
T Consensus 29 rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiI 107 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDII 107 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEE
Confidence 478999999985444 45555543 45789999999999988887765542221 12222222211111 112489998
Q ss_pred EEcCCCCC
Q 012783 409 LLDAPCSG 416 (456)
Q Consensus 409 llDaPCSg 416 (456)
++ +-|.-
T Consensus 108 la-ADClF 114 (201)
T KOG3201|consen 108 LA-ADCLF 114 (201)
T ss_pred Ee-ccchh
Confidence 76 55643
No 430
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=41.23 E-value=2e+02 Score=27.22 Aligned_cols=80 Identities=15% Similarity=0.070 Sum_probs=53.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~ 402 (456)
.+.+||=.|+ +|+.+..++..+.. ...|+.++.+...++.+...++..+. .+.++..|...... ...
T Consensus 10 ~~k~vlVtG~-s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~i~~~~~~~~~~~ 86 (255)
T PRK06113 10 DGKCAIITGA-GAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFALSKL 86 (255)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3678888885 56677777765543 34788899988888877776666554 36677888765321 112
Q ss_pred CCccEEEEcCCCC
Q 012783 403 VKCDKVLLDAPCS 415 (456)
Q Consensus 403 ~~fD~VllDaPCS 415 (456)
+.+|.|+..+...
T Consensus 87 ~~~d~li~~ag~~ 99 (255)
T PRK06113 87 GKVDILVNNAGGG 99 (255)
T ss_pred CCCCEEEECCCCC
Confidence 4689998866543
No 431
>PRK09291 short chain dehydrogenase; Provisional
Probab=41.10 E-value=2.3e+02 Score=26.53 Aligned_cols=76 Identities=21% Similarity=0.087 Sum_probs=51.1
Q ss_pred CeEEEEcCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---cCCCCccEEEE
Q 012783 335 QSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---NSTVKCDKVLL 410 (456)
Q Consensus 335 ~~VLDlcAGpGgkt~~la~~~~-~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---~~~~~fD~Vll 410 (456)
.+||=.|| +|+.+..+++.+. ....|++++.+......+.+..+..+.. +.++.+|...... ......|.|+.
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLA--LRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc--ceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 45665555 6778888877654 3458999999888877777766666543 6778888765321 12247899998
Q ss_pred cCC
Q 012783 411 DAP 413 (456)
Q Consensus 411 DaP 413 (456)
.+-
T Consensus 80 ~ag 82 (257)
T PRK09291 80 NAG 82 (257)
T ss_pred CCC
Confidence 653
No 432
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=40.69 E-value=1.1e+02 Score=29.41 Aligned_cols=79 Identities=11% Similarity=-0.015 Sum_probs=47.4
Q ss_pred CCCeEEEEcCCC-chHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cC
Q 012783 333 PGQSIVDCCAAP-GGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NS 401 (456)
Q Consensus 333 ~g~~VLDlcAGp-Ggkt~~la~~~~~~-g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~ 401 (456)
.|..+|=.|+++ +|.+..+++.+-.. .+|+.++.+....+.+++..+..+ ...+.++..|..+... ..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIKEE 84 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHHHh
Confidence 467899999884 88888888876533 477777654322222333333332 1236677888765321 11
Q ss_pred CCCccEEEEcC
Q 012783 402 TVKCDKVLLDA 412 (456)
Q Consensus 402 ~~~fD~VllDa 412 (456)
.+++|.++..+
T Consensus 85 ~g~ld~lv~na 95 (257)
T PRK08594 85 VGVIHGVAHCI 95 (257)
T ss_pred CCCccEEEECc
Confidence 25789888765
No 433
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.66 E-value=1.8e+02 Score=27.72 Aligned_cols=83 Identities=12% Similarity=0.026 Sum_probs=51.5
Q ss_pred CCCeEEEEcCCC-chHHHHHHHHcCCC-ceEEEEeC-----------CHHHHHHHHHHHHHcCCCceEEEEecccccccc
Q 012783 333 PGQSIVDCCAAP-GGKTLYMASCLSGQ-GLVYAIDI-----------NKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399 (456)
Q Consensus 333 ~g~~VLDlcAGp-Ggkt~~la~~~~~~-g~V~AvDi-----------s~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~ 399 (456)
.|.+||=.|+.. ||.+..+|..+... ..|+..+. .......+.+.++..|. .+.++..|......
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~ 82 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGV--KVSSMELDLTQNDA 82 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHH
Confidence 577899888874 67878777765433 36766542 13334455566666664 36778888764311
Q ss_pred ---------cCCCCccEEEEcCCCCCC
Q 012783 400 ---------NSTVKCDKVLLDAPCSGL 417 (456)
Q Consensus 400 ---------~~~~~fD~VllDaPCSg~ 417 (456)
...+..|.|+..+-+...
T Consensus 83 i~~~~~~~~~~~g~id~li~~ag~~~~ 109 (256)
T PRK12859 83 PKELLNKVTEQLGYPHILVNNAAYSTN 109 (256)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCCCCC
Confidence 112467999998866543
No 434
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.38 E-value=82 Score=30.43 Aligned_cols=77 Identities=18% Similarity=0.161 Sum_probs=50.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccc----------cccCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF----------ADNST 402 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~----------~~~~~ 402 (456)
...||=.||..||++-.++..+.. ...|+|.-.+-+++..+.. ..|+ ....-|.... -....
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~---~~gl----~~~kLDV~~~~~V~~v~~evr~~~~ 79 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAI---QFGL----KPYKLDVSKPEEVVTVSGEVRANPD 79 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHH---hhCC----eeEEeccCChHHHHHHHHHHhhCCC
Confidence 467999999999999888876644 4589998887776665543 3443 2344444321 11234
Q ss_pred CCccEEEEcC--CCCCC
Q 012783 403 VKCDKVLLDA--PCSGL 417 (456)
Q Consensus 403 ~~fD~VllDa--PCSg~ 417 (456)
++.|..+-+| |||+-
T Consensus 80 Gkld~L~NNAG~~C~~P 96 (289)
T KOG1209|consen 80 GKLDLLYNNAGQSCTFP 96 (289)
T ss_pred CceEEEEcCCCCCcccc
Confidence 6788888774 67653
No 435
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=40.20 E-value=83 Score=30.96 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=34.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHcC----CCceEEEEeCCHHHHH
Q 012783 332 QPGQSIVDCCAAPGGKTLYMASCLS----GQGLVYAIDINKGRLR 372 (456)
Q Consensus 332 ~~g~~VLDlcAGpGgkt~~la~~~~----~~g~V~AvDis~~rl~ 372 (456)
.+...++|+|||.|..|.+++..+. +...++.||....|.+
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K 61 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHK 61 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccccc
Confidence 5677999999999999999999874 3468899999777664
No 436
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.98 E-value=1.4e+02 Score=27.77 Aligned_cols=78 Identities=17% Similarity=0.077 Sum_probs=51.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~~ 403 (456)
+.+||=.|+ +|+.+.+++..+-. ..+|++++.+...+..+...+.. + ..+.++.+|....... ..+
T Consensus 5 ~~~vlItGa-sg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (251)
T PRK07231 5 GKVAIVTGA-SSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G--GRAIAVAADVSDEADVEAAVAAALERFG 80 (251)
T ss_pred CcEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C--CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 456666554 56777777766543 34899999999888777666554 2 2367888887653211 113
Q ss_pred CccEEEEcCCCC
Q 012783 404 KCDKVLLDAPCS 415 (456)
Q Consensus 404 ~fD~VllDaPCS 415 (456)
.+|.|+..+.+.
T Consensus 81 ~~d~vi~~ag~~ 92 (251)
T PRK07231 81 SVDILVNNAGTT 92 (251)
T ss_pred CCCEEEECCCCC
Confidence 689999977554
No 437
>PLN02253 xanthoxin dehydrogenase
Probab=39.71 E-value=1.1e+02 Score=29.48 Aligned_cols=76 Identities=12% Similarity=0.062 Sum_probs=49.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~-~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~~ 403 (456)
|.+||=.| |.|+.+..++..+. ...+|+.+|.+....+.+.+.+ +....+.++..|..+.... ..+
T Consensus 18 ~k~~lItG-as~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g 93 (280)
T PLN02253 18 GKVALVTG-GATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSL---GGEPNVCFFHCDVTVEDDVSRAVDFTVDKFG 93 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHh---cCCCceEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 56777666 56788888887664 3458999999877665554443 2223477888888653211 114
Q ss_pred CccEEEEcCC
Q 012783 404 KCDKVLLDAP 413 (456)
Q Consensus 404 ~fD~VllDaP 413 (456)
+.|.|+..+-
T Consensus 94 ~id~li~~Ag 103 (280)
T PLN02253 94 TLDIMVNNAG 103 (280)
T ss_pred CCCEEEECCC
Confidence 6899988653
No 438
>PRK05866 short chain dehydrogenase; Provisional
Probab=39.51 E-value=2.6e+02 Score=27.45 Aligned_cols=76 Identities=16% Similarity=0.130 Sum_probs=51.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTV 403 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~-~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~~ 403 (456)
+.+||=.| |+||.+..+++.+. ....|++++.+.+.++.+.+.+...+.. +.++..|..+... ...+
T Consensus 40 ~k~vlItG-asggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~--~~~~~~Dl~d~~~v~~~~~~~~~~~g 116 (293)
T PRK05866 40 GKRILLTG-ASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGD--AMAVPCDLSDLDAVDALVADVEKRIG 116 (293)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc--EEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45666555 46788888877653 3358999999999888877777655543 6678888765321 0124
Q ss_pred CccEEEEcC
Q 012783 404 KCDKVLLDA 412 (456)
Q Consensus 404 ~fD~VllDa 412 (456)
..|.|+..+
T Consensus 117 ~id~li~~A 125 (293)
T PRK05866 117 GVDILINNA 125 (293)
T ss_pred CCCEEEECC
Confidence 689999844
No 439
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=39.32 E-value=61 Score=33.66 Aligned_cols=49 Identities=20% Similarity=0.196 Sum_probs=35.2
Q ss_pred cCCCCCCeEEEEcC-C-CchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHH
Q 012783 329 VDPQPGQSIVDCCA-A-PGGKTLYMASCLS-GQGLVYAIDINKGRLRILNET 377 (456)
Q Consensus 329 l~~~~g~~VLDlcA-G-pGgkt~~la~~~~-~~g~V~AvDis~~rl~~l~~n 377 (456)
..+++|++||=+|+ | -|..++++|..++ +..+|+++|.++++++.+++.
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 45678999888753 3 4445666777653 234799999999999988764
No 440
>PRK07890 short chain dehydrogenase; Provisional
Probab=39.16 E-value=1.7e+02 Score=27.57 Aligned_cols=77 Identities=13% Similarity=0.025 Sum_probs=52.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~ 402 (456)
.+.+||=.|+ +|+.+.+++..+-. ...|+.++.++..++.+.+.+...+. ++.++..|...... ...
T Consensus 4 ~~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 4 KGKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGR--RALAVPTDITDEDQCANLVALALERF 80 (258)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCC--ceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 3567775554 66788877776543 35899999999888777777665553 36778888764321 011
Q ss_pred CCccEEEEcC
Q 012783 403 VKCDKVLLDA 412 (456)
Q Consensus 403 ~~fD~VllDa 412 (456)
+..|.|+..+
T Consensus 81 g~~d~vi~~a 90 (258)
T PRK07890 81 GRVDALVNNA 90 (258)
T ss_pred CCccEEEECC
Confidence 4689999866
No 441
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.98 E-value=69 Score=30.30 Aligned_cols=50 Identities=16% Similarity=0.094 Sum_probs=33.9
Q ss_pred HHHhcCCCCCCeEEEEcCC-CchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q 012783 325 VVAVVDPQPGQSIVDCCAA-PGGKTLYMASCLSGQGLVYAIDINKGRLRILNET 377 (456)
Q Consensus 325 v~~~l~~~~g~~VLDlcAG-pGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n 377 (456)
+...+....++.||=+|+- +|..+.++.+ ...+|+.+|+++.+-..+..+
T Consensus 36 i~~~~~~~E~~~vli~G~YltG~~~a~~Ls---~~~~vtv~Di~p~~r~~lp~~ 86 (254)
T COG4017 36 IRDFLEGEEFKEVLIFGVYLTGNYTAQMLS---KADKVTVVDIHPFMRGFLPNN 86 (254)
T ss_pred hhhhhcccCcceEEEEEeeehhHHHHHHhc---ccceEEEecCCHHHHhcCCCC
Confidence 3344445568889999886 5555555544 478999999999876554433
No 442
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=38.94 E-value=1.6e+02 Score=28.35 Aligned_cols=76 Identities=20% Similarity=0.100 Sum_probs=50.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~-~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~~ 403 (456)
+..||=.|+ +|+.+..++..+- ....|+.++.+.+.++.+.+.++..+. .+.++..|....... ..+
T Consensus 10 ~k~vlVtGa-s~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~~g 86 (278)
T PRK08277 10 GKVAVITGG-GGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGG--EALAVKADVLDKESLEQARQQILEDFG 86 (278)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 556665555 4667777777653 335899999998888777776665543 367788887643210 124
Q ss_pred CccEEEEcC
Q 012783 404 KCDKVLLDA 412 (456)
Q Consensus 404 ~fD~VllDa 412 (456)
.+|.|+..+
T Consensus 87 ~id~li~~a 95 (278)
T PRK08277 87 PCDILINGA 95 (278)
T ss_pred CCCEEEECC
Confidence 789998855
No 443
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=38.44 E-value=42 Score=32.79 Aligned_cols=84 Identities=14% Similarity=0.260 Sum_probs=49.8
Q ss_pred CeEEEEcCCCchHH--HHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccc--ccccCCCCccEEEE
Q 012783 335 QSIVDCCAAPGGKT--LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT--FADNSTVKCDKVLL 410 (456)
Q Consensus 335 ~~VLDlcAGpGgkt--~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~--~~~~~~~~fD~Vll 410 (456)
-+||++.+|-||.- +..|.. +.-.|-|+|++.-.-+.-..|- ..+-+ .+.|... ....+.-.||.++.
T Consensus 4 LrVlelysg~ggmhyal~~a~i--paqiVaAiDvNtvANevY~~N~----h~~L~--k~~~I~~lt~kefd~l~~~m~lM 75 (338)
T KOG0919|consen 4 LRVLELYSGHGGMHYALEDAQI--PAQIVAAIDVNTVANEVYAHNY----HSNLV--KTRNIQSLTVKEFDKLQANMLLM 75 (338)
T ss_pred eehhhhhhccchhhhhHhhhcC--chhhEEEEecchhHHHHHhcCc----ccchh--hccccceeeHhhhhhcccceEee
Confidence 47899999999863 333332 3456788999987666555441 11111 1112111 11122236899999
Q ss_pred cCCCCCCcccccCCCc
Q 012783 411 DAPCSGLGVLSKTCVG 426 (456)
Q Consensus 411 DaPCSg~G~irr~p~~ 426 (456)
-|||--.--+++.-|.
T Consensus 76 SPpCQPfTRiG~q~D~ 91 (338)
T KOG0919|consen 76 SPPCQPFTRIGLQRDT 91 (338)
T ss_pred CCCCCchhhhcccccc
Confidence 9999877666666654
No 444
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=38.42 E-value=22 Score=33.03 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=20.8
Q ss_pred CCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHH
Q 012783 343 APGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNE 376 (456)
Q Consensus 343 GpGgkt~~la~~~~~~-g~V~AvDis~~rl~~l~~ 376 (456)
|.|..++.+|..+... -+|+++|+++++++.+.+
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNN 41 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHT
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhh
Confidence 5555555555444334 599999999999988764
No 445
>PF10752 DUF2533: Protein of unknown function (DUF2533) ; InterPro: IPR019688 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=38.36 E-value=41 Score=26.99 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=31.2
Q ss_pred HHhcCCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHhhhc
Q 012783 161 IVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKD 203 (456)
Q Consensus 161 ll~~~~p~~a~inE~V~lak~~~~~~~~~fVNaVLr~i~r~~~ 203 (456)
++-++---..+|+|+|.+|+. +.+-+..-||+|-..+-....
T Consensus 21 F~~Le~~RE~aIeeav~~c~~-g~pFs~d~IN~vT~~mN~LAk 62 (84)
T PF10752_consen 21 FLQLEQQREAAIEEAVSLCKQ-GEPFSTDKINEVTKEMNELAK 62 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCCcHHHHHHHHHHHHHHHH
Confidence 333444556899999999998 667788899999887765433
No 446
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=38.34 E-value=1.6e+02 Score=28.73 Aligned_cols=78 Identities=10% Similarity=-0.020 Sum_probs=48.0
Q ss_pred CCCeEEEEcCCC-chHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cC
Q 012783 333 PGQSIVDCCAAP-GGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NS 401 (456)
Q Consensus 333 ~g~~VLDlcAGp-Ggkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~ 401 (456)
.|..||=.|++. +|.+..+|..+.. ..+|+.++.+....+.+++..+.++.. .++..|..+... ..
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~---~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSD---YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCc---eEEEecCCCHHHHHHHHHHHHHH
Confidence 367888888874 6788888876543 358888888854333344433444432 356778765321 11
Q ss_pred CCCccEEEEcCC
Q 012783 402 TVKCDKVLLDAP 413 (456)
Q Consensus 402 ~~~fD~VllDaP 413 (456)
.+.+|.++.++-
T Consensus 81 ~g~iDilVnnAG 92 (274)
T PRK08415 81 LGKIDFIVHSVA 92 (274)
T ss_pred cCCCCEEEECCc
Confidence 257899888763
No 447
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=38.31 E-value=1.3e+02 Score=30.10 Aligned_cols=75 Identities=15% Similarity=0.060 Sum_probs=46.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCCC---ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc--CCCCccEE
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSGQ---GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDKV 408 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~~---g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~--~~~~fD~V 408 (456)
|.+||=.|+ +|+.+.+++..+-.. .+|+++|.+......+.+.+ +.. .+.++.+|..+.... .-..+|.|
T Consensus 4 ~k~vLVTGa-tG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~---~~~-~~~~v~~Dl~d~~~l~~~~~~iD~V 78 (324)
T TIGR03589 4 NKSILITGG-TGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF---PAP-CLRFFIGDVRDKERLTRALRGVDYV 78 (324)
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh---CCC-cEEEEEccCCCHHHHHHHHhcCCEE
Confidence 567876655 689999988876433 47888987765543332222 222 377888998764321 11358999
Q ss_pred EEcCC
Q 012783 409 LLDAP 413 (456)
Q Consensus 409 llDaP 413 (456)
+.-+-
T Consensus 79 ih~Ag 83 (324)
T TIGR03589 79 VHAAA 83 (324)
T ss_pred EECcc
Confidence 88553
No 448
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=38.27 E-value=1.1e+02 Score=30.81 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=35.7
Q ss_pred hcCCCCCCeEEEEcCCC-chHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCC
Q 012783 328 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384 (456)
Q Consensus 328 ~l~~~~g~~VLDlcAGp-Ggkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~ 384 (456)
...+++|++||=.|+|+ |..++++|+.++ ..+|+++|.++++++.++ ++|.+
T Consensus 171 ~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~~~~~~----~~Ga~ 223 (358)
T TIGR03451 171 TGGVKRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDDRKLEWAR----EFGAT 223 (358)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HcCCc
Confidence 34678899999887543 333455666542 235999999999988874 46764
No 449
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=38.27 E-value=1.8e+02 Score=28.98 Aligned_cols=81 Identities=11% Similarity=0.155 Sum_probs=53.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEcC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllDa 412 (456)
.|.+||=+|||--.++...+-...+..+|+-+..+.++.+.+.+.+...+.. +.... ...+.. . ..+|+|+-
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~--~~~~~--~~~~~~-~-~~~dliIN-- 196 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAA--VEAAA--LADLEG-L-EEADLLIN-- 196 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccc--ccccc--cccccc-c-cccCEEEE--
Confidence 4789999999888877766554444468999999999999998888776541 11111 111111 1 15888887
Q ss_pred CCCCCccccc
Q 012783 413 PCSGLGVLSK 422 (456)
Q Consensus 413 PCSg~G~irr 422 (456)
|+..|+-..
T Consensus 197 -aTp~Gm~~~ 205 (283)
T COG0169 197 -ATPVGMAGP 205 (283)
T ss_pred -CCCCCCCCC
Confidence 677776544
No 450
>PRK06482 short chain dehydrogenase; Provisional
Probab=38.22 E-value=1.1e+02 Score=29.43 Aligned_cols=74 Identities=18% Similarity=0.065 Sum_probs=47.9
Q ss_pred eEEEEcCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CCCCc
Q 012783 336 SIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STVKC 405 (456)
Q Consensus 336 ~VLDlcAGpGgkt~~la~~~~~~-g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~~~f 405 (456)
+|| +..|+|+.+.+++..+-.. ..|++++.+++.++.+++.. + ..+.++.+|..+.... ..+..
T Consensus 4 ~vl-VtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 77 (276)
T PRK06482 4 TWF-ITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARY---G--DRLWVLQLDVTDSAAVRAVVDRAFAALGRI 77 (276)
T ss_pred EEE-EecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---c--CceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 466 4445788988888766433 58999999988776655432 2 2367788888653210 12467
Q ss_pred cEEEEcCCCC
Q 012783 406 DKVLLDAPCS 415 (456)
Q Consensus 406 D~VllDaPCS 415 (456)
|.|+..+-..
T Consensus 78 d~vi~~ag~~ 87 (276)
T PRK06482 78 DVVVSNAGYG 87 (276)
T ss_pred CEEEECCCCC
Confidence 9999855443
No 451
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=38.10 E-value=1.3e+02 Score=29.97 Aligned_cols=52 Identities=21% Similarity=0.197 Sum_probs=36.0
Q ss_pred CCCCC--CeEEEEcC--CCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012783 330 DPQPG--QSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (456)
Q Consensus 330 ~~~~g--~~VLDlcA--GpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~ 385 (456)
.+++| ++||=.|+ |.|..++++|..++ ..+|++++.++++.+.+++. +|.+.
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G-~~~Vi~~~~s~~~~~~~~~~---lGa~~ 204 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLG-CSRVVGICGSDEKCQLLKSE---LGFDA 204 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHh---cCCcE
Confidence 45555 89988876 45556677777753 22799999999887766553 67754
No 452
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=37.79 E-value=51 Score=33.63 Aligned_cols=44 Identities=20% Similarity=0.092 Sum_probs=24.8
Q ss_pred EEEEcCCCchHHHHHHH---Hc---CCCceEEEEeCCHHHHHHHHHHHHHc
Q 012783 337 IVDCCAAPGGKTLYMAS---CL---SGQGLVYAIDINKGRLRILNETAKLH 381 (456)
Q Consensus 337 VLDlcAGpGgkt~~la~---~~---~~~g~V~AvDis~~rl~~l~~n~~r~ 381 (456)
|+.-+||+| ||+.+.. .+ .....+.-+-.+..-...+++.+...
T Consensus 5 ~I~G~aGTG-KTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~ 54 (352)
T PF09848_consen 5 LITGGAGTG-KTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKK 54 (352)
T ss_pred EEEecCCcC-HHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhh
Confidence 556677776 6664433 33 22344555555666666666666544
No 453
>PRK05650 short chain dehydrogenase; Provisional
Probab=37.57 E-value=2.2e+02 Score=27.19 Aligned_cols=74 Identities=12% Similarity=-0.057 Sum_probs=49.5
Q ss_pred eEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CCCCc
Q 012783 336 SIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STVKC 405 (456)
Q Consensus 336 ~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~~~f 405 (456)
+||=.| |+|+.+..++..+-. ..+|+.++.+.+.++.+...++..+. .+.++.+|..+.... ..+.+
T Consensus 2 ~vlVtG-asggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~i~~~~~~i 78 (270)
T PRK05650 2 RVMITG-AASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGG--DGFYQRCDVRDYSQLTALAQACEEKWGGI 78 (270)
T ss_pred EEEEec-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 455444 577888887776543 34899999999888877777766543 366788887653210 11468
Q ss_pred cEEEEcC
Q 012783 406 DKVLLDA 412 (456)
Q Consensus 406 D~VllDa 412 (456)
|.|+..+
T Consensus 79 d~lI~~a 85 (270)
T PRK05650 79 DVIVNNA 85 (270)
T ss_pred CEEEECC
Confidence 9998865
No 454
>PRK06182 short chain dehydrogenase; Validated
Probab=37.45 E-value=1.5e+02 Score=28.41 Aligned_cols=71 Identities=15% Similarity=0.090 Sum_probs=45.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~~ 403 (456)
+..||=.| |+|+.+..+++.+.. ..+|++++.+.+.++.+.. .+ +.++.+|..+.... ..+
T Consensus 3 ~k~vlItG-asggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~----~~----~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 3 KKVALVTG-ASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS----LG----VHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----CC----CeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 45666444 678888888887643 3489999999887754432 22 45677787653210 124
Q ss_pred CccEEEEcCC
Q 012783 404 KCDKVLLDAP 413 (456)
Q Consensus 404 ~fD~VllDaP 413 (456)
.+|.|+..+.
T Consensus 74 ~id~li~~ag 83 (273)
T PRK06182 74 RIDVLVNNAG 83 (273)
T ss_pred CCCEEEECCC
Confidence 6899998653
No 455
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=37.34 E-value=74 Score=31.46 Aligned_cols=68 Identities=19% Similarity=0.189 Sum_probs=36.6
Q ss_pred CCCCCeEEEEcCCCch----HHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCcc
Q 012783 331 PQPGQSIVDCCAAPGG----KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406 (456)
Q Consensus 331 ~~~g~~VLDlcAGpGg----kt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD 406 (456)
+...++||-+|||+-- =|..+-+.++.+..++-+|+..- +++.-..+.+|-..+... .+||
T Consensus 59 VP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~-------------vSDa~~~~~~Dc~t~~~~--~k~D 123 (299)
T PF06460_consen 59 VPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDY-------------VSDADQSIVGDCRTYMPP--DKFD 123 (299)
T ss_dssp --TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS---------------B-SSSEEEES-GGGEEES--S-EE
T ss_pred eccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhh-------------ccccCCceeccccccCCC--Cccc
Confidence 3457899999987311 14567777777788899998642 222224677888776543 5899
Q ss_pred EEEEcCC
Q 012783 407 KVLLDAP 413 (456)
Q Consensus 407 ~VllDaP 413 (456)
.|+.|-=
T Consensus 124 lIiSDmY 130 (299)
T PF06460_consen 124 LIISDMY 130 (299)
T ss_dssp EEEE---
T ss_pred EEEEecc
Confidence 9999976
No 456
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=37.31 E-value=1.5e+02 Score=29.98 Aligned_cols=53 Identities=15% Similarity=0.237 Sum_probs=35.5
Q ss_pred hcCCCCCCeEEEEcCCC-chHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012783 328 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (456)
Q Consensus 328 ~l~~~~g~~VLDlcAGp-Ggkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~ 385 (456)
...+++|++||=.|+|+ |..+.++|+.++ ...|+++|.++++++.++ .+|.+.
T Consensus 181 ~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~~~~~~~~~~~----~lGa~~ 234 (368)
T cd08300 181 TAKVEPGSTVAVFGLGAVGLAVIQGAKAAG-ASRIIGIDINPDKFELAK----KFGATD 234 (368)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH----HcCCCE
Confidence 35678899999886532 223445565542 237999999999988664 367653
No 457
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.26 E-value=1.7e+02 Score=27.66 Aligned_cols=76 Identities=13% Similarity=0.022 Sum_probs=47.7
Q ss_pred CCeEEEEcCCC-chHHHHHHHHcCCC-ceEEEEeCC------------HHHHHHHHHHHHHcCCCceEEEEecccccccc
Q 012783 334 GQSIVDCCAAP-GGKTLYMASCLSGQ-GLVYAIDIN------------KGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399 (456)
Q Consensus 334 g~~VLDlcAGp-Ggkt~~la~~~~~~-g~V~AvDis------------~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~ 399 (456)
+..||=.|++. |+.+..++..+... ..|+.++.+ ..... +.+.++..+. .+.++..|..+...
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~D~~~~~~ 81 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYGV--RCEHMEIDLSQPYA 81 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcCC--eEEEEECCCCCHHH
Confidence 56788888775 78888888776433 488888766 23333 4444444443 37788888765321
Q ss_pred ---------cCCCCccEEEEcC
Q 012783 400 ---------NSTVKCDKVLLDA 412 (456)
Q Consensus 400 ---------~~~~~fD~VllDa 412 (456)
...+.+|.|+..+
T Consensus 82 ~~~~~~~~~~~~g~id~vi~~a 103 (256)
T PRK12748 82 PNRVFYAVSERLGDPSILINNA 103 (256)
T ss_pred HHHHHHHHHHhCCCCCEEEECC
Confidence 1124689888755
No 458
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=36.92 E-value=1.3e+02 Score=30.18 Aligned_cols=81 Identities=20% Similarity=0.123 Sum_probs=51.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc--CCCCccEEEE
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSGQG-LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDKVLL 410 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~~g-~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~--~~~~fD~Vll 410 (456)
+.+||=.|+ +|..+.++++.+-..| .|++++.+......+...+.. ...+.++.+|....... ....+|.|+-
T Consensus 10 ~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 85 (353)
T PLN02896 10 TGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVKGCDGVFH 85 (353)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 567887664 7899999988765444 788888776654433333221 12477888887653211 1135899888
Q ss_pred cCCCCCCc
Q 012783 411 DAPCSGLG 418 (456)
Q Consensus 411 DaPCSg~G 418 (456)
-|..++.+
T Consensus 86 ~A~~~~~~ 93 (353)
T PLN02896 86 VAASMEFD 93 (353)
T ss_pred CCccccCC
Confidence 77665544
No 459
>PRK06114 short chain dehydrogenase; Provisional
Probab=36.77 E-value=1.8e+02 Score=27.46 Aligned_cols=77 Identities=21% Similarity=0.060 Sum_probs=48.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCCC-ceEEEEeCCH-HHHHHHHHHHHHcCCCceEEEEecccccccc---------cCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINK-GRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 402 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~~-g~V~AvDis~-~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~ 402 (456)
+..+|=.| |+|+.+..+++.+... .+|+.++.+. ..++.+.+.++..+. .+.++..|...... ...
T Consensus 8 ~k~~lVtG-~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~i~~~~~~~~~~~ 84 (254)
T PRK06114 8 GQVAFVTG-AGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGR--RAIQIAADVTSKADLRAAVARTEAEL 84 (254)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 56677555 6777888888766433 4888888764 345555566655543 36677888754321 112
Q ss_pred CCccEEEEcCC
Q 012783 403 VKCDKVLLDAP 413 (456)
Q Consensus 403 ~~fD~VllDaP 413 (456)
+..|.|+..+-
T Consensus 85 g~id~li~~ag 95 (254)
T PRK06114 85 GALTLAVNAAG 95 (254)
T ss_pred CCCCEEEECCC
Confidence 46799988653
No 460
>PRK06181 short chain dehydrogenase; Provisional
Probab=36.73 E-value=1.8e+02 Score=27.53 Aligned_cols=75 Identities=16% Similarity=0.070 Sum_probs=49.1
Q ss_pred CeEEEEcCCCchHHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CCCC
Q 012783 335 QSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STVK 404 (456)
Q Consensus 335 ~~VLDlcAGpGgkt~~la~~~-~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~~~ 404 (456)
.+||=. .|+|+.+..++..+ ....+|++++.+....+.+.+.++..+. .+.++..|..+.... ..+.
T Consensus 2 ~~vlVt-Gasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 2 KVVIIT-GASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGG--EALVVPTDVSDAEACERLIEAAVARFGG 78 (263)
T ss_pred CEEEEe-cCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 356644 46677888777654 2346899999998887777666665543 467788887653210 1136
Q ss_pred ccEEEEcC
Q 012783 405 CDKVLLDA 412 (456)
Q Consensus 405 fD~VllDa 412 (456)
.|.|+..+
T Consensus 79 id~vi~~a 86 (263)
T PRK06181 79 IDILVNNA 86 (263)
T ss_pred CCEEEECC
Confidence 79988853
No 461
>PRK07832 short chain dehydrogenase; Provisional
Probab=36.58 E-value=1.7e+02 Score=27.98 Aligned_cols=71 Identities=15% Similarity=0.051 Sum_probs=44.4
Q ss_pred CCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCCCCccEEEEc
Q 012783 342 AAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTVKCDKVLLD 411 (456)
Q Consensus 342 AGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~~~fD~VllD 411 (456)
.|+|+.+..+++.+.. ...|+.++.+.+.++.+.+.+...+... +.++..|..+... ...+..|.|+..
T Consensus 7 Gas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ 85 (272)
T PRK07832 7 GAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTV-PEHRALDISDYDAVAAFAADIHAAHGSMDVVMNI 85 (272)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCc-ceEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 3467787777765532 3578889999888877766666555332 4456677654211 112468999885
Q ss_pred CC
Q 012783 412 AP 413 (456)
Q Consensus 412 aP 413 (456)
+.
T Consensus 86 ag 87 (272)
T PRK07832 86 AG 87 (272)
T ss_pred CC
Confidence 53
No 462
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=36.35 E-value=1.3e+02 Score=24.88 Aligned_cols=70 Identities=21% Similarity=0.148 Sum_probs=42.5
Q ss_pred eEEEEcCCCchHHHHHH-HHcCCCceEEE-EeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCCccEEEEcCC
Q 012783 336 SIVDCCAAPGGKTLYMA-SCLSGQGLVYA-IDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413 (456)
Q Consensus 336 ~VLDlcAGpGgkt~~la-~~~~~~g~V~A-vDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~fD~VllDaP 413 (456)
+|.=+|+|..+.....+ ....+...|++ +|.++++.+.. .+++|++ ...|..++... ..+|.|++-.|
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~---~~~~~~~-----~~~~~~~ll~~--~~~D~V~I~tp 71 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAF---AEKYGIP-----VYTDLEELLAD--EDVDAVIIATP 71 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHH---HHHTTSE-----EESSHHHHHHH--TTESEEEEESS
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHH---HHHhccc-----chhHHHHHHHh--hcCCEEEEecC
Confidence 45667887666544322 22224556664 69999887765 4556664 34555555433 36899999666
Q ss_pred CC
Q 012783 414 CS 415 (456)
Q Consensus 414 CS 415 (456)
.+
T Consensus 72 ~~ 73 (120)
T PF01408_consen 72 PS 73 (120)
T ss_dssp GG
T ss_pred Cc
Confidence 53
No 463
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=36.33 E-value=70 Score=31.68 Aligned_cols=76 Identities=25% Similarity=0.232 Sum_probs=39.0
Q ss_pred CeEEEEcCCCchHHHHHHHHcC------CCceEEEEeCCHHH---HHHHHHHHHHcCCCceEEEEec--ccccccccCCC
Q 012783 335 QSIVDCCAAPGGKTLYMASCLS------GQGLVYAIDINKGR---LRILNETAKLHQVNSVIRTIHA--DLRTFADNSTV 403 (456)
Q Consensus 335 ~~VLDlcAGpGgkt~~la~~~~------~~g~V~AvDis~~r---l~~l~~n~~r~g~~~~V~~~~~--Da~~~~~~~~~ 403 (456)
..|+=+|..-=|||+.++.+.. +...|.-++.+..+ .+.++...+.+|++- ..... +........ .
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~--~~~~~~~~l~~~l~~~-~ 271 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPV--KVARDPKELRKALDRL-R 271 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCce--eccCCHHHHHHHHHHc-c
Confidence 3444444333357765544321 12466666666644 455666666777752 22221 111111222 4
Q ss_pred CccEEEEcCC
Q 012783 404 KCDKVLLDAP 413 (456)
Q Consensus 404 ~fD~VllDaP 413 (456)
.+|.||+|.|
T Consensus 272 ~~d~vliDt~ 281 (282)
T TIGR03499 272 DKDLILIDTA 281 (282)
T ss_pred CCCEEEEeCC
Confidence 5899999976
No 464
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=36.29 E-value=1.4e+02 Score=29.61 Aligned_cols=52 Identities=12% Similarity=0.057 Sum_probs=34.0
Q ss_pred HhcCCCCCCeEEEEcCCC-chHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCC
Q 012783 327 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384 (456)
Q Consensus 327 ~~l~~~~g~~VLDlcAGp-Ggkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~ 384 (456)
..+.+.+|++||=.|+|+ |..+.++|..++ .+|++++.++++++.++ .+|.+
T Consensus 157 ~~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G--~~vi~~~~~~~~~~~~~----~~g~~ 209 (333)
T cd08296 157 RNSGAKPGDLVAVQGIGGLGHLAVQYAAKMG--FRTVAISRGSDKADLAR----KLGAH 209 (333)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHH----HcCCc
Confidence 334677899988887432 223445555543 47999999988877664 36764
No 465
>PRK05854 short chain dehydrogenase; Provisional
Probab=36.29 E-value=4.4e+02 Score=26.07 Aligned_cols=79 Identities=16% Similarity=0.087 Sum_probs=51.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTV 403 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~-~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~~ 403 (456)
|.+||=.| |+||.+..++..+- ...+|+.+..+.++.+.+.+.+....-...+.++..|...... ...+
T Consensus 14 gk~~lITG-as~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~ 92 (313)
T PRK05854 14 GKRAVVTG-ASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR 92 (313)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 55666544 46788888887654 3458999999998887777666543222237788888765321 1124
Q ss_pred CccEEEEcCC
Q 012783 404 KCDKVLLDAP 413 (456)
Q Consensus 404 ~fD~VllDaP 413 (456)
..|.++..|-
T Consensus 93 ~iD~li~nAG 102 (313)
T PRK05854 93 PIHLLINNAG 102 (313)
T ss_pred CccEEEECCc
Confidence 6899998763
No 466
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=35.99 E-value=1.7e+02 Score=29.25 Aligned_cols=83 Identities=16% Similarity=0.125 Sum_probs=50.6
Q ss_pred eEEEEcCCCchHHHHHHHHcCC--CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccc-cccc--cCCCCccEEEE
Q 012783 336 SIVDCCAAPGGKTLYMASCLSG--QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR-TFAD--NSTVKCDKVLL 410 (456)
Q Consensus 336 ~VLDlcAGpGgkt~~la~~~~~--~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~-~~~~--~~~~~fD~Vll 410 (456)
+|| +.-|+|..+.+++..+-. .-+|+++|.+......+ .+.. .+.++.+|.. .... ..-..+|.|+-
T Consensus 3 ~il-VtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~------~~~~-~~~~~~~Dl~~~~~~~~~~~~~~d~ViH 74 (347)
T PRK11908 3 KVL-ILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDL------VNHP-RMHFFEGDITINKEWIEYHVKKCDVILP 74 (347)
T ss_pred EEE-EECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHh------ccCC-CeEEEeCCCCCCHHHHHHHHcCCCEEEE
Confidence 455 556689999999887642 24899999876543211 1222 3778889986 2211 11135899887
Q ss_pred cCCCCCCcccccCCCc
Q 012783 411 DAPCSGLGVLSKTCVG 426 (456)
Q Consensus 411 DaPCSg~G~irr~p~~ 426 (456)
-+-++..+....+|+.
T Consensus 75 ~aa~~~~~~~~~~p~~ 90 (347)
T PRK11908 75 LVAIATPATYVKQPLR 90 (347)
T ss_pred CcccCChHHhhcCcHH
Confidence 6655544444556663
No 467
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=35.72 E-value=1.7e+02 Score=27.27 Aligned_cols=75 Identities=17% Similarity=0.111 Sum_probs=44.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHc--CCCceEEEEeCC-------------------HHHHHHHHHHHHHcCCCceEEEEec
Q 012783 334 GQSIVDCCAAPGGKTLYMASCL--SGQGLVYAIDIN-------------------KGRLRILNETAKLHQVNSVIRTIHA 392 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~--~~~g~V~AvDis-------------------~~rl~~l~~n~~r~g~~~~V~~~~~ 392 (456)
..+|+=+||| +.+.+++..+ .+-++|+-+|.+ +.+.+.+.+++++++-.-.|+....
T Consensus 21 ~s~VlIiG~g--glG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~ 98 (197)
T cd01492 21 SARILLIGLK--GLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTD 98 (197)
T ss_pred hCcEEEEcCC--HHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEec
Confidence 4678887655 4445544433 245677777654 3467788888888876544555544
Q ss_pred ccccccccCCCCccEEEE
Q 012783 393 DLRTFADNSTVKCDKVLL 410 (456)
Q Consensus 393 Da~~~~~~~~~~fD~Vll 410 (456)
...+.....-..||.|++
T Consensus 99 ~~~~~~~~~~~~~dvVi~ 116 (197)
T cd01492 99 DISEKPEEFFSQFDVVVA 116 (197)
T ss_pred CccccHHHHHhCCCEEEE
Confidence 333221111257899886
No 468
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=35.45 E-value=50 Score=26.76 Aligned_cols=13 Identities=31% Similarity=0.360 Sum_probs=10.2
Q ss_pred ccEEEEcCCCCCC
Q 012783 405 CDKVLLDAPCSGL 417 (456)
Q Consensus 405 fD~VllDaPCSg~ 417 (456)
||.|++|.|.+..
T Consensus 40 ~d~viiD~p~~~~ 52 (104)
T cd02042 40 YDYIIIDTPPSLG 52 (104)
T ss_pred CCEEEEeCcCCCC
Confidence 7888888888643
No 469
>PRK09072 short chain dehydrogenase; Provisional
Probab=35.42 E-value=2.6e+02 Score=26.46 Aligned_cols=77 Identities=18% Similarity=0.148 Sum_probs=49.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc--------CCCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--------STVK 404 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~-~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~--------~~~~ 404 (456)
+..||=.|+ +|+.+..++..+. ...+|++++.+++.++.+...+ .. ...+.++..|..+.... ..+.
T Consensus 5 ~~~vlItG~-s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 5 DKRVLLTGA-SGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PY--PGRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hc--CCceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 456666654 4677777766543 3458999999998887776555 22 23477888887653210 0246
Q ss_pred ccEEEEcCCC
Q 012783 405 CDKVLLDAPC 414 (456)
Q Consensus 405 fD~VllDaPC 414 (456)
+|.|+..+..
T Consensus 81 id~lv~~ag~ 90 (263)
T PRK09072 81 INVLINNAGV 90 (263)
T ss_pred CCEEEECCCC
Confidence 8999986543
No 470
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=35.39 E-value=1.3e+02 Score=30.38 Aligned_cols=59 Identities=24% Similarity=0.320 Sum_probs=38.0
Q ss_pred cCCCCCCeEEEEcCC--CchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecc
Q 012783 329 VDPQPGQSIVDCCAA--PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 393 (456)
Q Consensus 329 l~~~~g~~VLDlcAG--pGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~D 393 (456)
...++|++||=.||+ -|..+++||+.++. .++++--+.+..+. ++.+|.+..+.+...|
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~--~~v~~~~s~~k~~~----~~~lGAd~vi~y~~~~ 198 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKALGA--TVVAVVSSSEKLEL----LKELGADHVINYREED 198 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCC--cEEEEecCHHHHHH----HHhcCCCEEEcCCccc
Confidence 457789999988854 45567788887632 66677666665553 4456776544444444
No 471
>PRK08618 ornithine cyclodeaminase; Validated
Probab=35.28 E-value=3.4e+02 Score=27.38 Aligned_cols=87 Identities=7% Similarity=-0.004 Sum_probs=54.3
Q ss_pred hHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHH-HHcCCCceEEEEeCCHHHHHHHHHHHHH-cCCCceEEEEecccccc
Q 012783 320 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMA-SCLSGQGLVYAIDINKGRLRILNETAKL-HQVNSVIRTIHADLRTF 397 (456)
Q Consensus 320 ~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la-~~~~~~g~V~AvDis~~rl~~l~~n~~r-~g~~~~V~~~~~Da~~~ 397 (456)
..|.+++..|......+|+=+|||.=+.....+ ....+-.+|..++.++++.+.+.+.++. +++. +.. ..|..+.
T Consensus 113 a~sala~~~la~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~--~~~-~~~~~~~ 189 (325)
T PRK08618 113 ALSGVATKYLAREDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTE--IYV-VNSADEA 189 (325)
T ss_pred HHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCc--EEE-eCCHHHH
Confidence 456677788877777889888877655433222 1233456899999999998887776643 3442 222 3343322
Q ss_pred cccCCCCccEEEEcCC
Q 012783 398 ADNSTVKCDKVLLDAP 413 (456)
Q Consensus 398 ~~~~~~~fD~VllDaP 413 (456)
. ...|+|++=.|
T Consensus 190 ~----~~aDiVi~aT~ 201 (325)
T PRK08618 190 I----EEADIIVTVTN 201 (325)
T ss_pred H----hcCCEEEEccC
Confidence 2 35799988444
No 472
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=35.27 E-value=52 Score=32.61 Aligned_cols=62 Identities=19% Similarity=0.264 Sum_probs=41.5
Q ss_pred HHhcCCCC-CCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccccCCCC
Q 012783 326 VAVVDPQP-GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404 (456)
Q Consensus 326 ~~~l~~~~-g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~~~~~ 404 (456)
+..+...| ...|-|+|||-+-.+. . ....|+++|+.+ +.. .++.+|.+..|-. +++
T Consensus 172 i~~ik~r~~~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a--------------~~~--~V~~cDm~~vPl~-d~s 228 (325)
T KOG3045|consen 172 IRKIKRRPKNIVIADFGCGEAKIAS----S--ERHKVHSFDLVA--------------VNE--RVIACDMRNVPLE-DES 228 (325)
T ss_pred HHHHHhCcCceEEEecccchhhhhh----c--cccceeeeeeec--------------CCC--ceeeccccCCcCc-cCc
Confidence 33344444 4678999999975443 2 245799999842 222 3567888887654 479
Q ss_pred ccEEEE
Q 012783 405 CDKVLL 410 (456)
Q Consensus 405 fD~Vll 410 (456)
.|++++
T Consensus 229 vDvaV~ 234 (325)
T KOG3045|consen 229 VDVAVF 234 (325)
T ss_pred ccEEEe
Confidence 999888
No 473
>PLN00015 protochlorophyllide reductase
Probab=35.07 E-value=1.2e+02 Score=30.04 Aligned_cols=72 Identities=19% Similarity=0.181 Sum_probs=46.5
Q ss_pred EcCCCchHHHHHHHHcCCCc--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCCCCccEE
Q 012783 340 CCAAPGGKTLYMASCLSGQG--LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTVKCDKV 408 (456)
Q Consensus 340 lcAGpGgkt~~la~~~~~~g--~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~~~fD~V 408 (456)
+..|+||.+..+++.+...| .|+.++.+.+.++.+.+.+...+ ..+.++..|...... ...+..|.+
T Consensus 2 ITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~l 79 (308)
T PLN00015 2 ITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPK--DSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVL 79 (308)
T ss_pred EeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 34577888888888765444 78888988887766555443222 236677778765321 112468999
Q ss_pred EEcCC
Q 012783 409 LLDAP 413 (456)
Q Consensus 409 llDaP 413 (456)
+..+.
T Consensus 80 InnAG 84 (308)
T PLN00015 80 VCNAA 84 (308)
T ss_pred EECCC
Confidence 99773
No 474
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=35.05 E-value=1e+02 Score=32.26 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=49.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccc---ccCCCCccEE
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA---DNSTVKCDKV 408 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~---~~~~~~fD~V 408 (456)
...+|+=+|+ |..+..+++.+.. ...|+.+|.++++++.+++.. .+ +.++.+|+.... ...-..+|.|
T Consensus 230 ~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-----~~-~~~i~gd~~~~~~L~~~~~~~a~~v 301 (453)
T PRK09496 230 PVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-----PN-TLVLHGDGTDQELLEEEGIDEADAF 301 (453)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-----CC-CeEEECCCCCHHHHHhcCCccCCEE
Confidence 3577888777 5555666666544 458999999999988776642 12 457888886532 1223578888
Q ss_pred EEcCCC
Q 012783 409 LLDAPC 414 (456)
Q Consensus 409 llDaPC 414 (456)
++-.+.
T Consensus 302 i~~~~~ 307 (453)
T PRK09496 302 IALTND 307 (453)
T ss_pred EECCCC
Confidence 885543
No 475
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=34.83 E-value=1e+02 Score=30.22 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=45.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHcC----CCceEEEEeCCH--------------------------HHHHHHHHHHHHc
Q 012783 332 QPGQSIVDCCAAPGGKTLYMASCLS----GQGLVYAIDINK--------------------------GRLRILNETAKLH 381 (456)
Q Consensus 332 ~~g~~VLDlcAGpGgkt~~la~~~~----~~g~V~AvDis~--------------------------~rl~~l~~n~~r~ 381 (456)
.-...|+++|+--|+.++.++..+. ..-+|+++|.-+ --++..++|++++
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 3456899999999998887766542 234688887521 1356667777777
Q ss_pred CC-CceEEEEecccccc-cccCCCCccEEEEcC
Q 012783 382 QV-NSVIRTIHADLRTF-ADNSTVKCDKVLLDA 412 (456)
Q Consensus 382 g~-~~~V~~~~~Da~~~-~~~~~~~fD~VllDa 412 (456)
|+ ..++.++.|+..+- +....+++-.+-+|.
T Consensus 153 gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~ 185 (248)
T PF05711_consen 153 GLLDDNVRFVKGWFPDTLPDAPIERIALLHLDC 185 (248)
T ss_dssp TTSSTTEEEEES-HHHHCCC-TT--EEEEEE--
T ss_pred CCCcccEEEECCcchhhhccCCCccEEEEEEec
Confidence 75 33589999987543 222234556666664
No 476
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=34.76 E-value=71 Score=34.86 Aligned_cols=69 Identities=14% Similarity=0.069 Sum_probs=45.3
Q ss_pred CeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---cCCCCccEEEE
Q 012783 335 QSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---NSTVKCDKVLL 410 (456)
Q Consensus 335 ~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---~~~~~fD~Vll 410 (456)
++|+=+|+|+ .+..+++.+.. +..++.+|.|+++++.+++ .| ..++.+|+.+..- ..-+.+|.|++
T Consensus 418 ~hiiI~G~G~--~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~g----~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYGR--VGSLLGEKLLAAGIPLVVIETSRTRVDELRE----RG----IRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECCCh--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----CC----CeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 5666666655 45566666543 3589999999999888764 34 3578899876321 11247888877
Q ss_pred cCC
Q 012783 411 DAP 413 (456)
Q Consensus 411 DaP 413 (456)
-.+
T Consensus 488 ~~~ 490 (558)
T PRK10669 488 TIP 490 (558)
T ss_pred EcC
Confidence 443
No 477
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.63 E-value=1.5e+02 Score=27.43 Aligned_cols=79 Identities=25% Similarity=0.169 Sum_probs=51.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHcC-CCceEEEE-eCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAI-DINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~-~~g~V~Av-Dis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~ 402 (456)
+.+||=.| |+|+.+..++..+- ...+|+.+ +.+.+..+.+.+.+...+. .+.++..|..+.... ..
T Consensus 5 ~~~ilI~G-asg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (247)
T PRK05565 5 GKVAIVTG-ASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGG--DAIAVKADVSSEEDVENLVEQIVEKF 81 (247)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 34666665 46888888877543 23578888 9988888777776665432 377888888653210 01
Q ss_pred CCccEEEEcCCCC
Q 012783 403 VKCDKVLLDAPCS 415 (456)
Q Consensus 403 ~~fD~VllDaPCS 415 (456)
+.+|.|+..+...
T Consensus 82 ~~id~vi~~ag~~ 94 (247)
T PRK05565 82 GKIDILVNNAGIS 94 (247)
T ss_pred CCCCEEEECCCcC
Confidence 3689999866544
No 478
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=34.46 E-value=1.3e+02 Score=30.00 Aligned_cols=53 Identities=13% Similarity=-0.013 Sum_probs=37.0
Q ss_pred HhcCCCCCCeEEEEcCCCch-HHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012783 327 AVVDPQPGQSIVDCCAAPGG-KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (456)
Q Consensus 327 ~~l~~~~g~~VLDlcAGpGg-kt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~ 385 (456)
....+++|++||=.|+|+-| .+.++|+.++ .+|++++.++++++.+ +.+|.+.
T Consensus 159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a----~~~Ga~~ 212 (329)
T TIGR02822 159 LRASLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLA----LALGAAS 212 (329)
T ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHH----HHhCCce
Confidence 34567889999998865433 3456666643 4799999999987655 4477764
No 479
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=34.43 E-value=1.1e+02 Score=30.87 Aligned_cols=85 Identities=16% Similarity=0.102 Sum_probs=50.2
Q ss_pred cCCCchHHHHHHHHcCCC--ceEEEEeCCHHHHHHHHHHHHHc-C---CCceEEEEecccccccc---c-CCCCccEEEE
Q 012783 341 CAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLH-Q---VNSVIRTIHADLRTFAD---N-STVKCDKVLL 410 (456)
Q Consensus 341 cAGpGgkt~~la~~~~~~--g~V~AvDis~~rl~~l~~n~~r~-g---~~~~V~~~~~Da~~~~~---~-~~~~fD~Vll 410 (456)
-.|.|+.+..+++++-.. .+|+.+|.++..+..+++.+... + +...+..+.+|.++... . ....+|.|+-
T Consensus 4 TGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfH 83 (293)
T PF02719_consen 4 TGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFH 83 (293)
T ss_dssp ETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE
T ss_pred EccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEE
Confidence 357889999988876433 58999999999999999988532 2 22123456888875422 1 1247899998
Q ss_pred cCCCCCCcccccCCC
Q 012783 411 DAPCSGLGVLSKTCV 425 (456)
Q Consensus 411 DaPCSg~G~irr~p~ 425 (456)
=|---..+..-.+|.
T Consensus 84 aAA~KhVpl~E~~p~ 98 (293)
T PF02719_consen 84 AAALKHVPLMEDNPF 98 (293)
T ss_dssp ------HHHHCCCHH
T ss_pred ChhcCCCChHHhCHH
Confidence 666655555555554
No 480
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=34.30 E-value=1.6e+02 Score=27.21 Aligned_cols=78 Identities=18% Similarity=0.095 Sum_probs=51.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTV 403 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~~ 403 (456)
+.+||=.|+ +|+.+..+++.+.. ..+|+.++.++...+.....++..+.. +.++..|..+... ....
T Consensus 5 ~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (246)
T PRK05653 5 GKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGE--ARVLVFDVSDEAAVRALIEAAVEAFG 81 (246)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCc--eEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 467886665 78888888776533 346999999988887766666655543 6677788764321 0013
Q ss_pred CccEEEEcCCC
Q 012783 404 KCDKVLLDAPC 414 (456)
Q Consensus 404 ~fD~VllDaPC 414 (456)
.+|.|+.-+-.
T Consensus 82 ~id~vi~~ag~ 92 (246)
T PRK05653 82 ALDILVNNAGI 92 (246)
T ss_pred CCCEEEECCCc
Confidence 57888875543
No 481
>PRK07060 short chain dehydrogenase; Provisional
Probab=34.29 E-value=1.8e+02 Score=26.97 Aligned_cols=78 Identities=21% Similarity=0.137 Sum_probs=46.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc-----cCCCCcc
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-----NSTVKCD 406 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~-----~~~~~fD 406 (456)
.+.++|= ..|+|+.+.+++..+.. ..+|+.++.+.+.++.+.+. .+ +.++..|...... ....++|
T Consensus 8 ~~~~~lI-tGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~---~~----~~~~~~D~~~~~~v~~~~~~~~~~d 79 (245)
T PRK07060 8 SGKSVLV-TGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGE---TG----CEPLRLDVGDDAAIRAALAAAGAFD 79 (245)
T ss_pred CCCEEEE-eCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hC----CeEEEecCCCHHHHHHHHHHhCCCC
Confidence 4567774 44557777777775533 34899999988776544332 23 2345667654321 0124689
Q ss_pred EEEEcCCCCCCc
Q 012783 407 KVLLDAPCSGLG 418 (456)
Q Consensus 407 ~VllDaPCSg~G 418 (456)
.|+..+..+..+
T Consensus 80 ~vi~~ag~~~~~ 91 (245)
T PRK07060 80 GLVNCAGIASLE 91 (245)
T ss_pred EEEECCCCCCCC
Confidence 999987665443
No 482
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=34.25 E-value=1.7e+02 Score=29.54 Aligned_cols=51 Identities=14% Similarity=0.237 Sum_probs=35.0
Q ss_pred hcCCCCCCeEEEEcCCCchH---HHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012783 328 VVDPQPGQSIVDCCAAPGGK---TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (456)
Q Consensus 328 ~l~~~~g~~VLDlcAGpGgk---t~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~ 385 (456)
...+++|++||=.|+ |+. ++++|..++ ..+|+++|.++.+++.++ .+|.+.
T Consensus 179 ~~~~~~g~~vlV~G~--g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~----~~ga~~ 232 (365)
T cd08277 179 TAKVEPGSTVAVFGL--GAVGLSAIMGAKIAG-ASRIIGVDINEDKFEKAK----EFGATD 232 (365)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH----HcCCCc
Confidence 345788999998865 444 345566542 237999999999988774 367653
No 483
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=34.15 E-value=1e+02 Score=29.47 Aligned_cols=66 Identities=21% Similarity=0.160 Sum_probs=41.8
Q ss_pred EEEEcCCCchHHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccc---ccCCCCccEEEE
Q 012783 337 IVDCCAAPGGKTLYMASCLSGQG-LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA---DNSTVKCDKVLL 410 (456)
Q Consensus 337 VLDlcAGpGgkt~~la~~~~~~g-~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~---~~~~~~fD~Vll 410 (456)
|+=+|| |-.+.++|+.+...| .|+++|.++++++..... ..+ ...+++|++... ...-..+|.+++
T Consensus 3 iiIiG~--G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~--~~~----~~~v~gd~t~~~~L~~agi~~aD~vva 72 (225)
T COG0569 3 IIIIGA--GRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD--ELD----THVVIGDATDEDVLEEAGIDDADAVVA 72 (225)
T ss_pred EEEECC--cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh--hcc----eEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence 444444 556667777665554 899999999998763221 111 467788886532 112357898888
No 484
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=34.04 E-value=1.2e+02 Score=30.61 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=38.9
Q ss_pred hcCCCCCCeEEEEcC--CCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012783 328 VVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (456)
Q Consensus 328 ~l~~~~g~~VLDlcA--GpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~ 385 (456)
...+++|++||=.|+ |-|..++++|..++ .+|++++.++++.+.+++ .+|.+.
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~~---~lGa~~ 207 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLKN---KLGFDE 207 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH---hcCCCE
Confidence 346788999998877 35667788888763 579999999988776642 367654
No 485
>PRK07478 short chain dehydrogenase; Provisional
Probab=33.86 E-value=3.3e+02 Score=25.53 Aligned_cols=79 Identities=15% Similarity=0.016 Sum_probs=53.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTV 403 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~~ 403 (456)
+..||=.|+ +|+.+..+++.+.. ..+|+.++.+++.++.+.+.++..+. .+.++..|...... ...+
T Consensus 6 ~k~~lItGa-s~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 6 GKVAIITGA-SSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGG--EAVALAGDVRDEAYAKALVALAVERFG 82 (254)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 556775554 57777777776543 35899999999988888777776654 36677888765321 0124
Q ss_pred CccEEEEcCCCC
Q 012783 404 KCDKVLLDAPCS 415 (456)
Q Consensus 404 ~fD~VllDaPCS 415 (456)
.+|.++..+...
T Consensus 83 ~id~li~~ag~~ 94 (254)
T PRK07478 83 GLDIAFNNAGTL 94 (254)
T ss_pred CCCEEEECCCCC
Confidence 789999877543
No 486
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.72 E-value=1.7e+02 Score=29.44 Aligned_cols=74 Identities=15% Similarity=0.099 Sum_probs=53.9
Q ss_pred CCCeEEEEcCCCch---HHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------c
Q 012783 333 PGQSIVDCCAAPGG---KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------N 400 (456)
Q Consensus 333 ~g~~VLDlcAGpGg---kt~~la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~ 400 (456)
.|+.||=-|+|.|- .++++|++ ..+++.+|++.+-.....+.++..| .+.....|..+..+ .
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r---g~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR---GAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh---CCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence 48899998888874 34444544 4578899999999988888888776 37778888765432 1
Q ss_pred CCCCccEEEEcC
Q 012783 401 STVKCDKVLLDA 412 (456)
Q Consensus 401 ~~~~fD~VllDa 412 (456)
.-+..|.++.+|
T Consensus 111 e~G~V~ILVNNA 122 (300)
T KOG1201|consen 111 EVGDVDILVNNA 122 (300)
T ss_pred hcCCceEEEecc
Confidence 235788888875
No 487
>PRK06823 ornithine cyclodeaminase; Validated
Probab=33.70 E-value=3.9e+02 Score=26.92 Aligned_cols=84 Identities=12% Similarity=0.091 Sum_probs=55.8
Q ss_pred hHHHHHHHhcCCCCCCeEEEEcCCCchHHHHH-HHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccc
Q 012783 320 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYM-ASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (456)
Q Consensus 320 ~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~l-a~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~ 398 (456)
..|.+.+..|......++.-+|||.=+.+... .....+-.+|..++.++++.+...+.+++.+++ +.. ..+..+..
T Consensus 114 A~sala~~~La~~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~--v~~-~~~~~~av 190 (315)
T PRK06823 114 LAGRIVARLLAPQHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFA--VNT-TLDAAEVA 190 (315)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCc--EEE-ECCHHHHh
Confidence 45667788887777788888888765543322 222345679999999999999888888776653 332 33333221
Q ss_pred ccCCCCccEEEE
Q 012783 399 DNSTVKCDKVLL 410 (456)
Q Consensus 399 ~~~~~~fD~Vll 410 (456)
...|+|++
T Consensus 191 ----~~ADIV~t 198 (315)
T PRK06823 191 ----HAANLIVT 198 (315)
T ss_pred ----cCCCEEEE
Confidence 35688877
No 488
>PRK05872 short chain dehydrogenase; Provisional
Probab=33.61 E-value=2.8e+02 Score=27.16 Aligned_cols=79 Identities=20% Similarity=0.204 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCC
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 402 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~ 402 (456)
.|.+||=.| |+||.+..+++.+.. ..+|+.++.+++.++.+.+.+. ....+..+..|..+... ...
T Consensus 8 ~gk~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~---~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 8 AGKVVVVTG-AARGIGAELARRLHARGAKLALVDLEEAELAALAAELG---GDDRVLTVVADVTDLAAMQAAAEEAVERF 83 (296)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---CCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 467788665 456778888776643 3589999999988776655442 22235555678765321 112
Q ss_pred CCccEEEEcCCCC
Q 012783 403 VKCDKVLLDAPCS 415 (456)
Q Consensus 403 ~~fD~VllDaPCS 415 (456)
+.+|.|+..+--.
T Consensus 84 g~id~vI~nAG~~ 96 (296)
T PRK05872 84 GGIDVVVANAGIA 96 (296)
T ss_pred CCCCEEEECCCcC
Confidence 5789999976443
No 489
>PRK06500 short chain dehydrogenase; Provisional
Probab=33.60 E-value=3e+02 Score=25.60 Aligned_cols=76 Identities=17% Similarity=0.105 Sum_probs=46.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCCC
Q 012783 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTV 403 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~~ 403 (456)
+.+||=.| |.|+.+.++++.+.. ..+|+.++.+...++.+.+ ..+. .+.++..|...... ...+
T Consensus 6 ~k~vlItG-asg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~---~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (249)
T PRK06500 6 GKTALITG-GTSGIGLETARQFLAEGARVAITGRDPASLEAARA---ELGE--SALVIRADAGDVAAQKALAQALAEAFG 79 (249)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHH---HhCC--ceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 45555554 457788887776543 3489999998776655443 3343 35667777654321 1124
Q ss_pred CccEEEEcCCCC
Q 012783 404 KCDKVLLDAPCS 415 (456)
Q Consensus 404 ~fD~VllDaPCS 415 (456)
.+|.|+..+.-+
T Consensus 80 ~id~vi~~ag~~ 91 (249)
T PRK06500 80 RLDAVFINAGVA 91 (249)
T ss_pred CCCEEEECCCCC
Confidence 689999876443
No 490
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=33.47 E-value=1.5e+02 Score=25.66 Aligned_cols=82 Identities=18% Similarity=0.087 Sum_probs=53.7
Q ss_pred EEEEcCCCchHHHHHHHHcCC--CceEEEEeCC--HHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCCC
Q 012783 337 IVDCCAAPGGKTLYMASCLSG--QGLVYAIDIN--KGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTV 403 (456)
Q Consensus 337 VLDlcAGpGgkt~~la~~~~~--~g~V~AvDis--~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~~ 403 (456)
||=.|+ +|+.+..++..+-. ...|+.+..+ .+.++.+.+.++..+ . .+.++..|...... ...+
T Consensus 3 ~lItGa-~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (167)
T PF00106_consen 3 VLITGA-SSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-A-KITFIECDLSDPESIRALIEEVIKRFG 79 (167)
T ss_dssp EEEETT-TSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-S-EEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred EEEECC-CCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-c-ccccccccccccccccccccccccccc
Confidence 344444 46677777665533 3478888888 788888888888777 3 48899999764321 1125
Q ss_pred CccEEEEcCCCCCCcccc
Q 012783 404 KCDKVLLDAPCSGLGVLS 421 (456)
Q Consensus 404 ~fD~VllDaPCSg~G~ir 421 (456)
.+|.++..+.....+.+.
T Consensus 80 ~ld~li~~ag~~~~~~~~ 97 (167)
T PF00106_consen 80 PLDILINNAGIFSDGSLD 97 (167)
T ss_dssp SESEEEEECSCTTSBSGG
T ss_pred cccccccccccccccccc
Confidence 789999966555444443
No 491
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=33.25 E-value=1.6e+02 Score=30.04 Aligned_cols=75 Identities=13% Similarity=0.078 Sum_probs=45.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHc--CCCceEEEEeCCH---------------------HHHHHHHHHHHHcCCCceEEEE
Q 012783 334 GQSIVDCCAAPGGKTLYMASCL--SGQGLVYAIDINK---------------------GRLRILNETAKLHQVNSVIRTI 390 (456)
Q Consensus 334 g~~VLDlcAGpGgkt~~la~~~--~~~g~V~AvDis~---------------------~rl~~l~~n~~r~g~~~~V~~~ 390 (456)
+.+||=+|||. .+.++|..+ .+-|+|+-+|.+. .+.+.+++.+++.+-.-.|+.+
T Consensus 24 ~~~VlIiG~Gg--lGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 24 EKHVLIVGAGA--LGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred CCcEEEECCCH--HHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 56899988863 333333332 2456899999874 4778888888887655446666
Q ss_pred ecccccc-cccCCCCccEEEE
Q 012783 391 HADLRTF-ADNSTVKCDKVLL 410 (456)
Q Consensus 391 ~~Da~~~-~~~~~~~fD~Vll 410 (456)
..|...- ....-..+|+|+.
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid 122 (338)
T PRK12475 102 VTDVTVEELEELVKEVDLIID 122 (338)
T ss_pred eccCCHHHHHHHhcCCCEEEE
Confidence 6654311 0111245776655
No 492
>PLN00203 glutamyl-tRNA reductase
Probab=33.11 E-value=1.8e+02 Score=31.60 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=40.9
Q ss_pred cccccccchHHHHHHHhcCC--CCCCeEEEEcCCCchHHHHHHHHcCCCc--eEEEEeCCHHHHHHHHHHH
Q 012783 312 EGLCAVQDESAGLVVAVVDP--QPGQSIVDCCAAPGGKTLYMASCLSGQG--LVYAIDINKGRLRILNETA 378 (456)
Q Consensus 312 ~G~~~vQd~ss~lv~~~l~~--~~g~~VLDlcAGpGgkt~~la~~~~~~g--~V~AvDis~~rl~~l~~n~ 378 (456)
.|-..+=..+..++...++- -.+.+|+=+|| |..+..++..+...| .|+.++.+.++.+.+.+.+
T Consensus 242 ~~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGA--G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~ 310 (519)
T PLN00203 242 SGAVSVSSAAVELALMKLPESSHASARVLVIGA--GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEF 310 (519)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeC--HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Confidence 44455544444455555542 34788999988 555555555443333 6999999999887776543
No 493
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=33.10 E-value=1.9e+02 Score=27.04 Aligned_cols=75 Identities=11% Similarity=0.145 Sum_probs=44.1
Q ss_pred CCeEEEEcCCC-chHHHHHHHHcCCCceEEEEeCC-------------------HHHHHHHHHHHHHcCCCceEEEEecc
Q 012783 334 GQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDIN-------------------KGRLRILNETAKLHQVNSVIRTIHAD 393 (456)
Q Consensus 334 g~~VLDlcAGp-Ggkt~~la~~~~~~g~V~AvDis-------------------~~rl~~l~~n~~r~g~~~~V~~~~~D 393 (456)
+.+||=+|||. |+..+....++ +-++|+.+|.+ ..+.+.+.++++..+-.-.++.+...
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~ 99 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKER 99 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhc
Confidence 57888888773 44444333333 45789999987 56778888888876543234444333
Q ss_pred ccc--ccccCCCCccEEEE
Q 012783 394 LRT--FADNSTVKCDKVLL 410 (456)
Q Consensus 394 a~~--~~~~~~~~fD~Vll 410 (456)
... +... -..||.|+.
T Consensus 100 i~~~~~~~~-~~~~D~Vi~ 117 (202)
T TIGR02356 100 VTAENLELL-INNVDLVLD 117 (202)
T ss_pred CCHHHHHHH-HhCCCEEEE
Confidence 321 1111 246787765
No 494
>PRK07791 short chain dehydrogenase; Provisional
Probab=32.85 E-value=3.6e+02 Score=26.20 Aligned_cols=78 Identities=14% Similarity=0.075 Sum_probs=48.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcC-CCceEEEEeCCH---------HHHHHHHHHHHHcCCCceEEEEecccccccc---
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINK---------GRLRILNETAKLHQVNSVIRTIHADLRTFAD--- 399 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~-~~g~V~AvDis~---------~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~--- 399 (456)
.+.++|-.|++ ||.+..+++.+- ....|+.+|.+. +.++.+.+.++..+. .+.++..|......
T Consensus 5 ~~k~~lITGas-~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~Dv~~~~~v~~ 81 (286)
T PRK07791 5 DGRVVIVTGAG-GGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGG--EAVANGDDIADWDGAAN 81 (286)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCC--ceEEEeCCCCCHHHHHH
Confidence 46677777765 566777766553 345788888765 666666666655444 35677788765321
Q ss_pred ------cCCCCccEEEEcCC
Q 012783 400 ------NSTVKCDKVLLDAP 413 (456)
Q Consensus 400 ------~~~~~fD~VllDaP 413 (456)
...+.+|.++..+-
T Consensus 82 ~~~~~~~~~g~id~lv~nAG 101 (286)
T PRK07791 82 LVDAAVETFGGLDVLVNNAG 101 (286)
T ss_pred HHHHHHHhcCCCCEEEECCC
Confidence 11257899988653
No 495
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=32.76 E-value=1.7e+02 Score=28.65 Aligned_cols=76 Identities=16% Similarity=0.079 Sum_probs=50.6
Q ss_pred CeEEEEcCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCCCC
Q 012783 335 QSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTVK 404 (456)
Q Consensus 335 ~~VLDlcAGpGgkt~~la~~~~~-~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~~~ 404 (456)
+.||=-|| +.|++..+|+.+.. ..+|+......++|+.+...+.. ..+.++..|.++... ...++
T Consensus 7 kv~lITGA-SSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~----~~~~~~~~DVtD~~~~~~~i~~~~~~~g~ 81 (246)
T COG4221 7 KVALITGA-SSGIGEATARALAEAGAKVVLAARREERLEALADEIGA----GAALALALDVTDRAAVEAAIEALPEEFGR 81 (246)
T ss_pred cEEEEecC-cchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc----CceEEEeeccCCHHHHHHHHHHHHHhhCc
Confidence 44454454 44566777766543 45899999999999988877664 235677777765421 11357
Q ss_pred ccEEEEcCCCC
Q 012783 405 CDKVLLDAPCS 415 (456)
Q Consensus 405 fD~VllDaPCS 415 (456)
+|.++.+|--.
T Consensus 82 iDiLvNNAGl~ 92 (246)
T COG4221 82 IDILVNNAGLA 92 (246)
T ss_pred ccEEEecCCCC
Confidence 89999987544
No 496
>PRK07775 short chain dehydrogenase; Provisional
Probab=32.59 E-value=3.2e+02 Score=26.20 Aligned_cols=77 Identities=10% Similarity=-0.086 Sum_probs=50.7
Q ss_pred CeEEEEcCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------CCCC
Q 012783 335 QSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STVK 404 (456)
Q Consensus 335 ~~VLDlcAGpGgkt~~la~~~~~~-g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~~~~ 404 (456)
..||=.| |+|+.+.++++.+-.. .+|++++.+...+..+...+...+. .+.++..|....... ..+.
T Consensus 11 ~~vlVtG-a~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 87 (274)
T PRK07775 11 RPALVAG-ASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGG--EAVAFPLDVTDPDSVKSFVAQAEEALGE 87 (274)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 4566555 5688888888766433 4788888888877766666655543 367778887653211 1246
Q ss_pred ccEEEEcCCC
Q 012783 405 CDKVLLDAPC 414 (456)
Q Consensus 405 fD~VllDaPC 414 (456)
.|.|+..+-.
T Consensus 88 id~vi~~Ag~ 97 (274)
T PRK07775 88 IEVLVSGAGD 97 (274)
T ss_pred CCEEEECCCc
Confidence 7999987643
No 497
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=32.28 E-value=2.9e+02 Score=27.73 Aligned_cols=90 Identities=7% Similarity=-0.041 Sum_probs=51.9
Q ss_pred hHHHHHHHhcCCCCCCeEEEEcCCCchHHHH-HHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccc
Q 012783 320 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLY-MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (456)
Q Consensus 320 ~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~-la~~~~~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~ 398 (456)
..|.+++.+|.+....++.=+|||.=+.+.. +...+.+-.+|..++.++++.+.+.+.++.+++. +. .+.|..+..
T Consensus 114 A~sala~~~La~~~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~--v~-~~~~~~~av 190 (313)
T PF02423_consen 114 AVSALAARYLARPDARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVP--VV-AVDSAEEAV 190 (313)
T ss_dssp HHHHHHHHHHS-TT--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTC--EE-EESSHHHHH
T ss_pred HHHHHHHHHhCcCCCceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcccccc--ce-eccchhhhc
Confidence 3566777888877677888888887555322 2223345679999999999999999999885543 32 334544332
Q ss_pred ccCCCCccEEEEcCCCCCCcc
Q 012783 399 DNSTVKCDKVLLDAPCSGLGV 419 (456)
Q Consensus 399 ~~~~~~fD~VllDaPCSg~G~ 419 (456)
...|+|++ |+.+..
T Consensus 191 ----~~aDii~t---aT~s~~ 204 (313)
T PF02423_consen 191 ----RGADIIVT---ATPSTT 204 (313)
T ss_dssp ----TTSSEEEE-------SS
T ss_pred ----ccCCEEEE---ccCCCC
Confidence 35689988 554444
No 498
>PRK06198 short chain dehydrogenase; Provisional
Probab=32.14 E-value=2.7e+02 Score=26.16 Aligned_cols=80 Identities=13% Similarity=0.063 Sum_probs=50.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHcCCC-ce-EEEEeCCHHHHHHHHHHHHHcCCCceEEEEeccccccccc---------C
Q 012783 333 PGQSIVDCCAAPGGKTLYMASCLSGQ-GL-VYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 401 (456)
Q Consensus 333 ~g~~VLDlcAGpGgkt~~la~~~~~~-g~-V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~~---------~ 401 (456)
.+.+||=.| |+|+.+..+++.+... .+ |+.++.+.+........+...+. .+.++..|....... .
T Consensus 5 ~~k~vlItG-a~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK06198 5 DGKVALVTG-GTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGA--KAVFVQADLSDVEDCRRVVAAADEA 81 (260)
T ss_pred CCcEEEEeC-CCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCC--eEEEEEccCCCHHHHHHHHHHHHHH
Confidence 356777655 5677888887766432 35 99999988777655555544443 366777887643210 0
Q ss_pred CCCccEEEEcCCCC
Q 012783 402 TVKCDKVLLDAPCS 415 (456)
Q Consensus 402 ~~~fD~VllDaPCS 415 (456)
.+.+|.|+..+-.+
T Consensus 82 ~g~id~li~~ag~~ 95 (260)
T PRK06198 82 FGRLDALVNAAGLT 95 (260)
T ss_pred hCCCCEEEECCCcC
Confidence 13689998866443
No 499
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=32.14 E-value=78 Score=33.08 Aligned_cols=93 Identities=14% Similarity=0.107 Sum_probs=56.6
Q ss_pred cchHHHHHHHhcCCCCCCeEEEEcCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHH-------HHHHcCC-CceEEE
Q 012783 318 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE-------TAKLHQV-NSVIRT 389 (456)
Q Consensus 318 Qd~ss~lv~~~l~~~~g~~VLDlcAGpGgkt~~la~~~~~~g~V~AvDis~~rl~~l~~-------n~~r~g~-~~~V~~ 389 (456)
|-+.-.-++.-++..+++.-.|+|+|-|+.....|...+ ...=+++++...--+.+.. .++-+|- .+.+..
T Consensus 177 ~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~ 255 (419)
T KOG3924|consen 177 QLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIET 255 (419)
T ss_pred hHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceee
Confidence 434444456778899999999999999999888877643 3344566654433322222 2344555 456788
Q ss_pred Eeccccccccc--CCCCccEEEEc
Q 012783 390 IHADLRTFADN--STVKCDKVLLD 411 (456)
Q Consensus 390 ~~~Da~~~~~~--~~~~fD~VllD 411 (456)
+++++...... .....++|+++
T Consensus 256 i~gsf~~~~~v~eI~~eatvi~vN 279 (419)
T KOG3924|consen 256 IHGSFLDPKRVTEIQTEATVIFVN 279 (419)
T ss_pred cccccCCHHHHHHHhhcceEEEEe
Confidence 88887543211 11345566654
No 500
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=32.11 E-value=2.9e+02 Score=26.10 Aligned_cols=74 Identities=18% Similarity=0.103 Sum_probs=49.4
Q ss_pred eEEEEcCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEecccccccc---------cCCCCc
Q 012783 336 SIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTVKC 405 (456)
Q Consensus 336 ~VLDlcAGpGgkt~~la~~~~-~~g~V~AvDis~~rl~~l~~n~~r~g~~~~V~~~~~Da~~~~~---------~~~~~f 405 (456)
+||=.|++ |+.+..++..+. ...+|+.++.++..++.+.+.++..+ .+.++..|...... ...+.+
T Consensus 2 ~vlItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g~i 77 (259)
T PRK08340 2 NVLVTASS-RGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLGGI 77 (259)
T ss_pred eEEEEcCC-cHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 45666654 667777777653 34589999999998887777776543 26678888764321 112578
Q ss_pred cEEEEcCC
Q 012783 406 DKVLLDAP 413 (456)
Q Consensus 406 D~VllDaP 413 (456)
|.++..+-
T Consensus 78 d~li~naG 85 (259)
T PRK08340 78 DALVWNAG 85 (259)
T ss_pred CEEEECCC
Confidence 99988664
Done!