BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012785
(456 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BWN|A Chain A, L-Tryptophan Aminotransferase
pdb|3BWN|B Chain B, L-Tryptophan Aminotransferase
pdb|3BWN|D Chain D, L-Tryptophan Aminotransferase
pdb|3BWN|E Chain E, L-Tryptophan Aminotransferase
pdb|3BWN|F Chain F, L-Tryptophan Aminotransferase
Length = 391
Score = 405 bits (1040), Expect = e-113, Method: Compositional matrix adjust.
Identities = 192/362 (53%), Positives = 260/362 (71%), Gaps = 5/362 (1%)
Query: 96 IINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV 155
++N+DHGDPT YE+YW+K+GD+ T+ I G +SYFSD+ NLCWFLEPE + LH V
Sbjct: 24 VVNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGV 83
Query: 156 VGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPIXXXXXXXXXXXXXXITDCVKSRL 215
VGNA TE+ +IVVGTGSTQL QAA++ALSS S+P+ T V+S +
Sbjct: 84 VGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGM 143
Query: 216 YKWAGDAKRFNKDGPYIELVTSPNNPDGSVRQSVVNRSG---GILVHDLAYYWPQYTSIT 272
YKW GDA F+K GPYIELVTSPNNPDG++R++VVNR ++HD AYYWP YT IT
Sbjct: 144 YKWEGDAWGFDKKGPYIELVTSPNNPDGTIRETVVNRPDDDEAKVIHDFAYYWPHYTPIT 203
Query: 273 YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVL 332
DHD+MLFT SK TGHAG+RIGWALVKD EVAKKM +YI +N+IGVSK+SQ+R AK+L
Sbjct: 204 RRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKIL 263
Query: 333 KVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFE 392
V+ ++CK S SE E FF++ M RW++LR V++S F++P+ P FC + G++ E
Sbjct: 264 NVLKETCK-SESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLE 322
Query: 393 PQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLS 452
PAFAWL ++E D S L+ +K+++R+G+ G K+VR+SML R++ +N+F++RL+
Sbjct: 323 SYPAFAWLGTKEET-DLVSELRRHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLERLA 381
Query: 453 KI 454
+
Sbjct: 382 NM 383
>pdb|3BWN|C Chain C, L-Tryptophan Aminotransferase
pdb|3BWO|A Chain A, L-Tryptophan Aminotransferase
pdb|3BWO|B Chain B, L-Tryptophan Aminotransferase
pdb|3BWO|C Chain C, L-Tryptophan Aminotransferase
pdb|3BWO|D Chain D, L-Tryptophan Aminotransferase
pdb|3BWO|E Chain E, L-Tryptophan Aminotransferase
pdb|3BWO|F Chain F, L-Tryptophan Aminotransferase
Length = 391
Score = 403 bits (1035), Expect = e-112, Method: Compositional matrix adjust.
Identities = 191/362 (52%), Positives = 259/362 (71%), Gaps = 5/362 (1%)
Query: 96 IINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV 155
++N+DHGDPT YE+YW+K+GD+ T+ I G +SYFSD+ NLCWFLEPE + LH V
Sbjct: 24 VVNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGV 83
Query: 156 VGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPIXXXXXXXXXXXXXXITDCVKSRL 215
VGNA TE+ +IVVGTGSTQL QAA++ALSS S+P+ T V+S +
Sbjct: 84 VGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGM 143
Query: 216 YKWAGDAKRFNKDGPYIELVTSPNNPDGSVRQSVVNRSG---GILVHDLAYYWPQYTSIT 272
YKW GDA F+K GPYIELVTSPNNPDG++R++VVNR ++HD AYYWP YT IT
Sbjct: 144 YKWEGDAWGFDKKGPYIELVTSPNNPDGTIRETVVNRPDDDEAKVIHDFAYYWPHYTPIT 203
Query: 273 YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVL 332
DHD+MLFT S TGHAG+RIGWALVKD EVAKKM +YI +N+IGVSK+SQ+R AK+L
Sbjct: 204 RRQDHDIMLFTFSXITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKIL 263
Query: 333 KVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFE 392
V+ ++CK S SE E FF++ M RW++LR V++S F++P+ P FC + G++ E
Sbjct: 264 NVLKETCK-SESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLE 322
Query: 393 PQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLS 452
PAFAWL ++E D S L+ +K+++R+G+ G K+VR+SML R++ +N+F++RL+
Sbjct: 323 SYPAFAWLGTKEET-DLVSELRRHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLERLA 381
Query: 453 KI 454
+
Sbjct: 382 NM 383
>pdb|1LK9|A Chain A, The Three-Dimensional Structure Of Alliinase From Garlic
pdb|1LK9|B Chain B, The Three-Dimensional Structure Of Alliinase From Garlic
Length = 448
Score = 228 bits (580), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 128/368 (34%), Positives = 200/368 (54%), Gaps = 15/368 (4%)
Query: 98 NVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYF-SDVRNLCWFLEPEFAKEVVRLHKVV 156
+V GD E+YW++ + + +++ W +SYF + V N F+ E K + LH+VV
Sbjct: 60 DVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSN---FISFELEKTIKELHEVV 116
Query: 157 GNAITENHHIVVGTGSTQLFQAALYALSSQDASEPIXXXXXXXXXXXXXXI----TDCVK 212
GNA ++ +IV G G TQL + +LS + P + T
Sbjct: 117 GNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFD 176
Query: 213 SRLYKWAGDAKRF-NKDGP--YIELVTSPNNPDGSVRQSVVNRSGGILVHDLAYYWPQYT 269
+ Y WAG+A + N P YIE+VTSPNNP+G +R +V+ G ++D+ YYWP YT
Sbjct: 177 KKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHAVI--KGCKSIYDMVYYWPHYT 234
Query: 270 SITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAA 329
I Y AD D++LFT+SK TGH+G+R GWAL+KD V + Y+ NT G +++QLR+
Sbjct: 235 PIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSL 294
Query: 330 KVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELP-SQFCTFLG 388
KVLK V K F ++ RW + + +S FS ELP S++C +
Sbjct: 295 KVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFR 354
Query: 389 RAFEPQPAFAWLKCE-QEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLF 447
R P P++AW+KCE +E +DC + +I T++G F S +YVR+S++ ++++
Sbjct: 355 RMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQL 414
Query: 448 VQRLSKIL 455
+ L ++
Sbjct: 415 MYYLKDMV 422
>pdb|2HOR|A Chain A, Crystal Structure Of Alliinase From Garlic- Apo Form
pdb|2HOX|A Chain A, Alliinase From Allium Sativum (Garlic)
pdb|2HOX|B Chain B, Alliinase From Allium Sativum (Garlic)
pdb|2HOX|C Chain C, Alliinase From Allium Sativum (Garlic)
pdb|2HOX|D Chain D, Alliinase From Allium Sativum (Garlic)
Length = 427
Score = 227 bits (579), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 128/368 (34%), Positives = 200/368 (54%), Gaps = 15/368 (4%)
Query: 98 NVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYF-SDVRNLCWFLEPEFAKEVVRLHKVV 156
+V GD E+YW++ + + +++ W +SYF + V N F+ E K + LH+VV
Sbjct: 60 DVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSN---FISFELEKTIKELHEVV 116
Query: 157 GNAITENHHIVVGTGSTQLFQAALYALSSQDASEPIXXXXXXXXXXXXXXI----TDCVK 212
GNA ++ +IV G G TQL + +LS + P + T
Sbjct: 117 GNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFD 176
Query: 213 SRLYKWAGDAKRF-NKDGP--YIELVTSPNNPDGSVRQSVVNRSGGILVHDLAYYWPQYT 269
+ Y WAG+A + N P YIE+VTSPNNP+G +R +V+ G ++D+ YYWP YT
Sbjct: 177 KKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHAVI--KGCKSIYDMVYYWPHYT 234
Query: 270 SITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAA 329
I Y AD D++LFT+SK TGH+G+R GWAL+KD V + Y+ NT G +++QLR+
Sbjct: 235 PIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSL 294
Query: 330 KVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELP-SQFCTFLG 388
KVLK V K F ++ RW + + +S FS ELP S++C +
Sbjct: 295 KVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFR 354
Query: 389 RAFEPQPAFAWLKCE-QEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLF 447
R P P++AW+KCE +E +DC + +I T++G F S +YVR+S++ ++++
Sbjct: 355 RMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQL 414
Query: 448 VQRLSKIL 455
+ L ++
Sbjct: 415 MYYLKDMV 422
>pdb|3CQ4|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum
pdb|3CQ4|B Chain B, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum
Length = 376
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 10/78 (12%)
Query: 230 PYIELVTSPNNPDGSVR-----QSVVNRSGGILVHDLAY--YWPQYTSITYPADHDLMLF 282
P I VT+PNNP G V + ++N + GI++ D AY + P ++ T + L
Sbjct: 162 PDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLV 221
Query: 283 ---TVSKSTGHAGTRIGW 297
T+SK+ AG R+G+
Sbjct: 222 VSRTMSKAFDFAGGRLGY 239
>pdb|3CQ5|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum In Complex With Pmp
pdb|3CQ5|B Chain B, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum In Complex With Pmp
pdb|3CQ5|C Chain C, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum In Complex With Pmp
Length = 369
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 10/78 (12%)
Query: 230 PYIELVTSPNNPDGSVR-----QSVVNRSGGILVHDLAY--YWPQYTSITYPADHDLMLF 282
P I VT+PNNP G V + ++N + GI++ D AY + P ++ T + L
Sbjct: 165 PDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLV 224
Query: 283 ---TVSKSTGHAGTRIGW 297
T+SK+ AG R+G+
Sbjct: 225 VSRTMSKAFDFAGGRLGY 242
>pdb|1GEW|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase
Complexed With Pyridoxal 5'-Phosphate
pdb|1GEX|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase
Complexed With Histidinol-Phosphate
pdb|1GEY|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase
Complexed With N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|1IJI|A Chain A, Crystal Structure Of L-histidinol Phosphate
Aminotransferase With Plp
Length = 356
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 228 DGPYIELVTSPNNPDGSVRQSV-------VNRSGGILVHDLAY--YWPQYTSITYPAD-- 276
DG + V SPNNP G + + R I+V D AY + PQ + + A+
Sbjct: 145 DGVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYP 204
Query: 277 HDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI 313
H +L T+SK+ AG R G+ L + EV + K I
Sbjct: 205 HLAILRTLSKAFALAGLRCGFTLANE-EVINLLMKVI 240
>pdb|1FG3|A Chain A, Crystal Structure Of L-Histidinol Phosphate
Aminotransferase Complexed With L-Histidinol
pdb|1FG7|A Chain A, Crystal Structure Of L-Histidinol Phosphate
Aminotransferase With Pyridoxal-5'-Phosphate
Length = 356
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 228 DGPYIELVTSPNNPDGSVRQSV-------VNRSGGILVHDLAY--YWPQYTSITYPAD-- 276
DG + V SPNNP G + + R I+V D AY + PQ + + A+
Sbjct: 145 DGVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYP 204
Query: 277 HDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI 313
H +L T+SK+ AG R G+ L + EV + K I
Sbjct: 205 HLAILRTLSKAFALAGLRCGFTLANE-EVINLLXKVI 240
>pdb|3CQ6|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum Holo-Form (Plp Covalently Bound )
pdb|3CQ6|C Chain C, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum Holo-Form (Plp Covalently Bound )
pdb|3CQ6|E Chain E, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum Holo-Form (Plp Covalently Bound )
Length = 369
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Query: 230 PYIELVTSPNNPDGSVR-----QSVVNRSGGILVHDLAY--YWPQYTSITYPADHDLMLF 282
P I VT+PNNP G V + ++N + GI++ D AY + P ++ T + L
Sbjct: 165 PDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLV 224
Query: 283 ---TVSKSTGHAGTRIGW 297
T+S + AG R+G+
Sbjct: 225 VSRTMSXAFDFAGGRLGY 242
>pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255)
From Thermotoga Maritima At 1.90 A Resolution
pdb|1O4S|B Chain B, Crystal Structure Of Aspartate Aminotransferase (Tm1255)
From Thermotoga Maritima At 1.90 A Resolution
Length = 389
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 96/240 (40%), Gaps = 48/240 (20%)
Query: 234 LVTSPNNPDGSV-RQSVV--------NRSGGIL---VHDLAYYWPQYTSI---TYPADHD 278
L+ SPNNP G V R+ + R+ I+ V+D Y ++TSI + D
Sbjct: 179 LINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRI 238
Query: 279 LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDS 338
+ + SKS G R+G+ L+ +VA ++K T ++ +Q A K L+V
Sbjct: 239 VYINGFSKSHSMTGWRVGY-LISSEKVATAVSKIQSHTTSCINTVAQYAALKALEV---- 293
Query: 339 CKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAF- 397
N M +K+ + F V L F+ EP+ AF
Sbjct: 294 --------------DNSYMVQTFKERKN-------FVVERLKKMGVKFV----EPEGAFY 328
Query: 398 AWLKCE-QEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456
+ K +++ CE L+ K+ G F P +VR+S E + R+ L+
Sbjct: 329 LFFKVRGDDVKFCERLLEEKKVALVPGSAF-LKPGFVRLSFATSIERLTEALDRIEDFLN 387
>pdb|3ELE|A Chain A, Crystal Structure Of Amino Transferase (rer070207001803)
From Eubacterium Rectale At 2.10 A Resolution
pdb|3ELE|B Chain B, Crystal Structure Of Amino Transferase (rer070207001803)
From Eubacterium Rectale At 2.10 A Resolution
pdb|3ELE|C Chain C, Crystal Structure Of Amino Transferase (rer070207001803)
From Eubacterium Rectale At 2.10 A Resolution
pdb|3ELE|D Chain D, Crystal Structure Of Amino Transferase (rer070207001803)
From Eubacterium Rectale At 2.10 A Resolution
Length = 398
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 54/136 (39%), Gaps = 30/136 (22%)
Query: 213 SRLYKWAGDAKRFNKDGPYIE----------LVTSPNNPDGSV-RQSVVNRSGGIL---- 257
+RL + D + F D +E ++ SPNNP G+V + + + +L
Sbjct: 146 ARLVEVPADTEHFQIDFDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKS 205
Query: 258 ---------VHDLAYYWPQYTSITYP-----ADHDLMLFTVSKSTGHAGTRIGWALVKDM 303
+ D Y Y I P D+ L+ ++ SKS G RIG+ LV D
Sbjct: 206 KEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPGERIGYVLVPD- 264
Query: 304 EVAKKMTKYIELNTIG 319
EV K Y + G
Sbjct: 265 EVYDKAELYAAVCGAG 280
>pdb|3LY1|A Chain A, Crystal Structure Of Putative Histidinol-Phosphate
Aminotransferase (Yp_050345.1) From Erwinia Carotovora
Atroseptica Scri1043 At 1.80 A Resolution
pdb|3LY1|B Chain B, Crystal Structure Of Putative Histidinol-Phosphate
Aminotransferase (Yp_050345.1) From Erwinia Carotovora
Atroseptica Scri1043 At 1.80 A Resolution
pdb|3LY1|C Chain C, Crystal Structure Of Putative Histidinol-Phosphate
Aminotransferase (Yp_050345.1) From Erwinia Carotovora
Atroseptica Scri1043 At 1.80 A Resolution
pdb|3LY1|D Chain D, Crystal Structure Of Putative Histidinol-Phosphate
Aminotransferase (Yp_050345.1) From Erwinia Carotovora
Atroseptica Scri1043 At 1.80 A Resolution
Length = 354
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 27/178 (15%)
Query: 156 VGNAITENHH-----IVVGTGSTQLFQAALYALSSQDASEPIXXXXXXXXXXXXXXITDC 210
+GN + +H I++ GS++ +AA+ A +S +A I
Sbjct: 56 LGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAKIAGXK 115
Query: 211 VKS--RLYKWAGDAKRFNK-----DGPYIELVTSPNNPDGSVRQSVV-------NRSGGI 256
V L WA D + GP I + +PNNP G++ + V +
Sbjct: 116 VTKVKXLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTX 175
Query: 257 LVHDLAYYW----PQYTS----ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVA 306
+ D AY P++ S IT A++ ++L T SK AG R+G+A+ +A
Sbjct: 176 FIVDEAYAEFVNDPRFRSISPXITQGAENIILLKTFSKIHAXAGXRVGYAVAHPTVIA 233
>pdb|3QGU|A Chain A, L,L-Diaminopimelate Aminotransferase From Chalmydomonas
Reinhardtii
pdb|3QGU|B Chain B, L,L-Diaminopimelate Aminotransferase From Chalmydomonas
Reinhardtii
Length = 449
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 16/85 (18%)
Query: 232 IELVTSPNNPDGSVRQ-----SVVN---RSGGILVHDLAYYW----PQYTSITY--PADH 277
I SPNNP G+ +VN ++G ILV+D AY P Y P
Sbjct: 212 IIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGAD 271
Query: 278 DLMLFTVS--KSTGHAGTRIGWALV 300
++ + T S K G G R+GW +V
Sbjct: 272 EVAIETCSFSKYAGFTGVRLGWTVV 296
>pdb|2DOU|A Chain A, Probable N-Succinyldiaminopimelate Aminotransferase
(Ttha0342) From Thermus Thermophilus Hb8
pdb|2DOU|B Chain B, Probable N-Succinyldiaminopimelate Aminotransferase
(Ttha0342) From Thermus Thermophilus Hb8
Length = 376
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 15/91 (16%)
Query: 232 IELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYY-------WPQYTSITYPAD 276
+ L+ PNNP G+V + + G L+HD Y P ++ +
Sbjct: 161 VLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKE 220
Query: 277 HDLMLFTVSKSTGHAGTRIGWALVKDMEVAK 307
+ LF++SKS AG R+G+AL + +A+
Sbjct: 221 RVVELFSLSKSYNLAGFRLGFALGSEEALAR 251
>pdb|2Z1Z|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With L-malate Ion
pdb|2Z1Z|B Chain B, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With L-malate Ion
pdb|3EI5|A Chain A, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Glu: An
External Aldimine Mimic
pdb|3EI5|B Chain B, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Glu: An
External Aldimine Mimic
pdb|3EI6|A Chain A, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Dap: An
External Aldimine Mimic
pdb|3EI6|B Chain B, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Dap: An
External Aldimine Mimic
pdb|3EI7|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana (No Plp)
pdb|3EI7|B Chain B, Crystal Structure Of Apo-Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana (No Plp)
Length = 432
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 49/125 (39%), Gaps = 26/125 (20%)
Query: 232 IELVTSPNNPDGSV--RQSVVN------RSGGILVHDLAYYWPQYTS-------ITYPAD 276
I SPNNP G+ R+ + ++G I+V+D AY Y S P
Sbjct: 201 IIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAY--AMYMSDDNPRSIFEIPGA 258
Query: 277 HDLMLFTVS--KSTGHAGTRIGWALV-------KDMEVAKKMTKYIELNTIGVSKDSQLR 327
++ + T S K G G R+GW ++ VAK + I G S SQ
Sbjct: 259 EEVAMETASFSKYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAG 318
Query: 328 AAKVL 332
A L
Sbjct: 319 ALACL 323
>pdb|3EIA|A Chain A, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-Glu: External Aldimine Form
pdb|3EIA|B Chain B, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-Glu: External Aldimine Form
Length = 432
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 49/125 (39%), Gaps = 26/125 (20%)
Query: 232 IELVTSPNNPDGSV--RQSVVN------RSGGILVHDLAYYWPQYTS-------ITYPAD 276
I SPNNP G+ R+ + ++G I+V+D AY Y S P
Sbjct: 201 IIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAY--AMYMSDDNPRSIFEIPGA 258
Query: 277 HDLMLFTVSKS--TGHAGTRIGWALV-------KDMEVAKKMTKYIELNTIGVSKDSQLR 327
++ + T S S G G R+GW ++ VAK + I G S SQ
Sbjct: 259 EEVAMETASFSQYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAG 318
Query: 328 AAKVL 332
A L
Sbjct: 319 ALACL 323
>pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
pdb|2X5D|B Chain B, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
pdb|2X5D|C Chain C, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
pdb|2X5D|D Chain D, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
Length = 412
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 256 ILVHDLAYY------WPQYTSITYPADHDLML--FTVSKSTGHAGTRIGWALVKDMEVAK 307
++VHDLAY W + + P D+ + FT+SKS AG RIG+ +V + E+
Sbjct: 207 MVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGF-MVGNPELVS 265
Query: 308 KMTKYIELNTIGVSKDSQLRAAKVLK 333
+ + + G Q+ A L+
Sbjct: 266 ALARIKSYHDYGTFTPLQVAAIAALE 291
>pdb|3EI8|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With Ll-Dap: External Aldimine Form
pdb|3EI8|B Chain B, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With Ll-Dap: External Aldimine Form
pdb|3EI9|A Chain A, Crystal Structure Of K270n Variant Of Ll-diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-glu: External Aldimine Form
pdb|3EI9|B Chain B, Crystal Structure Of K270n Variant Of Ll-diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-glu: External Aldimine Form
pdb|3EIB|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana
pdb|3EIB|B Chain B, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana
Length = 432
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 49/125 (39%), Gaps = 26/125 (20%)
Query: 232 IELVTSPNNPDGSV--RQSVVN------RSGGILVHDLAYYWPQYTS-------ITYPAD 276
I SPNNP G+ R+ + ++G I+V+D AY Y S P
Sbjct: 201 IIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAY--AMYMSDDNPRSIFEIPGA 258
Query: 277 HDLMLFTVSKS--TGHAGTRIGWALV-------KDMEVAKKMTKYIELNTIGVSKDSQLR 327
++ + T S S G G R+GW ++ VAK + I G S SQ
Sbjct: 259 EEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAG 318
Query: 328 AAKVL 332
A L
Sbjct: 319 ALACL 323
>pdb|2Z20|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana
pdb|2Z20|B Chain B, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana
Length = 432
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 48/125 (38%), Gaps = 26/125 (20%)
Query: 232 IELVTSPNNPDGSV--RQSVVN------RSGGILVHDLAYYWPQYTS-------ITYPAD 276
I SPNNP G+ R+ + ++G I+V+D AY Y S P
Sbjct: 201 IIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAY--AXYXSDDNPRSIFEIPGA 258
Query: 277 HDLMLFTVS--KSTGHAGTRIGWALV-------KDMEVAKKMTKYIELNTIGVSKDSQLR 327
++ T S K G G R+GW ++ VAK + I G S SQ
Sbjct: 259 EEVAXETASFSKYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAG 318
Query: 328 AAKVL 332
A L
Sbjct: 319 ALACL 323
>pdb|3LW2|A Chain A, Mouse Plasminogen Activator Inhibitor-1 (Pai-1)
Length = 379
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 320 VSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPEL 379
+S QL A+ L+ V SG+ F +S R M + +S LF V
Sbjct: 309 LSDQEQLSVAQALQKVRIEVNESGTVASSSTAFV---ISARMAPTEMVIDRSFLFVVRHN 365
Query: 380 PSQFCTFLGRAFEP 393
P++ F+G+ EP
Sbjct: 366 PTETILFMGQVMEP 379
>pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MO9|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MOK|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|C Chain C, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|D Chain D, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|2C3D|A Chain A, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3D|B Chain B, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3C|A Chain A, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|2C3C|B Chain B, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|3Q6J|A Chain A, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
pdb|3Q6J|B Chain B, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
Length = 523
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 87 IQSQDGGERIINVDHGDPTMYEKYW 111
+++ DGGE I NVD DP Y+ +
Sbjct: 24 LEAPDGGEVIYNVDENDPREYDAIF 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,263,595
Number of Sequences: 62578
Number of extensions: 472229
Number of successful extensions: 1125
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1097
Number of HSP's gapped (non-prelim): 27
length of query: 456
length of database: 14,973,337
effective HSP length: 102
effective length of query: 354
effective length of database: 8,590,381
effective search space: 3040994874
effective search space used: 3040994874
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)