Query 012785
Match_columns 456
No_of_seqs 358 out of 2444
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 16:11:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012785.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012785hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hox_A ALLIIN lyase 1; cystein 100.0 8.5E-52 2.9E-56 419.8 30.1 393 36-456 2-423 (427)
2 3bwn_A AT1G70560, L-tryptophan 100.0 8.3E-50 2.8E-54 400.8 29.7 358 91-455 19-384 (391)
3 1b5p_A Protein (aspartate amin 100.0 1.5E-42 5.3E-47 347.1 34.3 327 92-456 29-383 (385)
4 3jtx_A Aminotransferase; NP_28 100.0 3.6E-41 1.2E-45 337.9 35.8 323 91-456 27-396 (396)
5 2r2n_A Kynurenine/alpha-aminoa 100.0 1.3E-41 4.4E-46 344.9 29.8 345 80-455 18-421 (425)
6 3aow_A Putative uncharacterize 100.0 9.9E-41 3.4E-45 340.6 31.9 327 93-455 75-442 (448)
7 3ezs_A Aminotransferase ASPB; 100.0 7.4E-41 2.5E-45 333.2 29.8 317 92-456 22-373 (376)
8 3h14_A Aminotransferase, class 100.0 9.8E-41 3.4E-45 334.4 30.3 325 91-455 28-379 (391)
9 3b46_A Aminotransferase BNA3; 100.0 1.1E-40 3.7E-45 340.4 29.8 326 92-454 55-443 (447)
10 3e2y_A Kynurenine-oxoglutarate 100.0 2.5E-40 8.6E-45 333.3 31.0 332 92-454 21-409 (410)
11 3k7y_A Aspartate aminotransfer 100.0 1.4E-40 4.9E-45 334.3 28.7 320 92-455 27-402 (405)
12 3d6k_A Putative aminotransfera 100.0 1.5E-40 5E-45 336.9 28.1 323 95-455 33-415 (422)
13 2z61_A Probable aspartate amin 100.0 2.6E-40 9E-45 328.8 29.4 326 92-456 27-369 (370)
14 3fvs_A Kynurenine--oxoglutarat 100.0 1.8E-40 6E-45 335.8 28.2 334 92-455 26-419 (422)
15 2dou_A Probable N-succinyldiam 100.0 2.9E-40 9.9E-45 329.2 28.8 327 91-456 22-376 (376)
16 3dyd_A Tyrosine aminotransfera 100.0 1.2E-39 3.9E-44 330.8 32.8 327 91-455 51-421 (427)
17 2o1b_A Aminotransferase, class 100.0 1.4E-39 4.7E-44 327.8 32.5 327 92-456 45-401 (404)
18 1fg7_A Histidinol phosphate am 100.0 1.7E-39 5.8E-44 321.6 30.9 305 94-455 29-355 (356)
19 3qgu_A LL-diaminopimelate amin 100.0 6.7E-40 2.3E-44 334.5 28.3 328 91-456 66-438 (449)
20 2x5d_A Probable aminotransfera 100.0 2.6E-39 8.9E-44 326.5 31.7 327 91-455 34-395 (412)
21 3fdb_A Beta C-S lyase, putativ 100.0 3.4E-40 1.1E-44 328.5 24.8 325 92-456 21-374 (377)
22 3ppl_A Aspartate aminotransfer 100.0 1.5E-39 5.2E-44 329.8 29.5 325 93-455 32-417 (427)
23 3ele_A Amino transferase; RER0 100.0 1.3E-39 4.6E-44 326.8 28.7 320 93-455 34-393 (398)
24 1j32_A Aspartate aminotransfer 100.0 4.2E-39 1.4E-43 322.1 30.9 325 91-455 27-384 (388)
25 3kax_A Aminotransferase, class 100.0 5.1E-39 1.7E-43 320.4 31.0 324 93-456 23-383 (383)
26 3ei9_A LL-diaminopimelate amin 100.0 1.4E-39 4.9E-44 330.4 27.3 326 92-454 54-424 (432)
27 3ez1_A Aminotransferase MOCR f 100.0 5.9E-39 2E-43 324.9 30.7 324 94-455 25-412 (423)
28 1gd9_A Aspartate aminotransfer 100.0 3.5E-39 1.2E-43 322.8 28.0 324 94-455 26-383 (389)
29 3nra_A Aspartate aminotransfer 100.0 2.4E-39 8.2E-44 325.6 26.4 324 95-455 40-402 (407)
30 1u08_A Hypothetical aminotrans 100.0 1.1E-38 3.8E-43 318.9 30.6 321 94-454 30-386 (386)
31 3get_A Histidinol-phosphate am 100.0 4.4E-39 1.5E-43 319.2 27.1 309 94-456 30-365 (365)
32 3g7q_A Valine-pyruvate aminotr 100.0 1.4E-38 4.9E-43 321.1 30.9 333 92-455 29-410 (417)
33 1o4s_A Aspartate aminotransfer 100.0 1.5E-38 5.2E-43 318.5 30.8 321 92-456 39-387 (389)
34 3ffh_A Histidinol-phosphate am 100.0 2.6E-38 9E-43 313.4 31.5 311 93-455 31-363 (363)
35 3dzz_A Putative pyridoxal 5'-p 100.0 1.9E-38 6.5E-43 317.2 30.3 324 92-455 25-386 (391)
36 1yiz_A Kynurenine aminotransfe 100.0 2.6E-38 8.9E-43 320.7 31.6 331 94-456 37-427 (429)
37 3fkd_A L-threonine-O-3-phospha 100.0 1.1E-38 3.8E-43 314.6 27.6 311 92-455 13-339 (350)
38 2gb3_A Aspartate aminotransfer 100.0 1.1E-37 3.8E-42 314.3 34.9 324 91-455 40-399 (409)
39 2o0r_A RV0858C (N-succinyldiam 100.0 2.3E-38 7.8E-43 319.5 29.1 324 93-456 24-394 (411)
40 3hdo_A Histidinol-phosphate am 100.0 9.5E-38 3.3E-42 309.3 32.8 315 92-455 24-352 (360)
41 4dq6_A Putative pyridoxal phos 100.0 1.2E-37 4.1E-42 311.4 32.9 324 93-456 31-391 (391)
42 1vp4_A Aminotransferase, putat 100.0 1.4E-38 4.7E-43 322.6 26.3 328 93-455 42-415 (425)
43 1c7n_A Cystalysin; transferase 100.0 4.8E-38 1.7E-42 315.5 29.7 322 94-455 31-390 (399)
44 1v2d_A Glutamine aminotransfer 100.0 4.5E-38 1.5E-42 313.9 29.3 317 94-456 25-369 (381)
45 3ihj_A Alanine aminotransferas 100.0 2.7E-38 9.3E-43 326.5 28.5 304 128-455 122-490 (498)
46 3g0t_A Putative aminotransfera 100.0 6.7E-38 2.3E-42 318.3 30.2 330 92-455 42-434 (437)
47 1bw0_A TAT, protein (tyrosine 100.0 1.2E-37 4.1E-42 314.5 31.5 324 94-455 33-410 (416)
48 1xi9_A Putative transaminase; 100.0 3.7E-38 1.3E-42 317.4 27.3 326 90-455 34-400 (406)
49 1d2f_A MALY protein; aminotran 100.0 9.6E-38 3.3E-42 312.5 29.9 321 94-455 28-386 (390)
50 3p1t_A Putative histidinol-pho 100.0 1.4E-37 4.8E-42 304.8 29.8 309 91-456 13-335 (337)
51 1lc5_A COBD, L-threonine-O-3-p 100.0 1.9E-37 6.4E-42 307.6 31.0 311 92-455 22-357 (364)
52 3tcm_A Alanine aminotransferas 100.0 1.3E-37 4.3E-42 321.9 30.8 303 128-455 127-491 (500)
53 4f4e_A Aromatic-amino-acid ami 100.0 4.1E-38 1.4E-42 318.6 26.4 324 92-456 47-420 (420)
54 3f6t_A Aspartate aminotransfer 100.0 4.9E-39 1.7E-43 334.7 20.0 405 6-455 14-522 (533)
55 1iay_A ACC synthase 2, 1-amino 100.0 3.2E-37 1.1E-41 312.7 32.8 327 94-455 36-424 (428)
56 3l8a_A METC, putative aminotra 100.0 6.5E-38 2.2E-42 317.2 27.4 324 93-456 60-420 (421)
57 3piu_A 1-aminocyclopropane-1-c 100.0 1.3E-37 4.4E-42 316.4 29.3 329 92-455 36-429 (435)
58 2x5f_A Aspartate_tyrosine_phen 100.0 9.9E-38 3.4E-42 316.7 28.4 320 94-455 47-426 (430)
59 3rq1_A Aminotransferase class 100.0 1.1E-37 3.9E-42 315.0 28.5 322 93-455 37-412 (418)
60 3euc_A Histidinol-phosphate am 100.0 1.8E-37 6.1E-42 307.9 29.4 314 93-456 29-366 (367)
61 2zyj_A Alpha-aminodipate amino 100.0 9.3E-38 3.2E-42 313.5 27.5 322 93-455 31-390 (397)
62 3ly1_A Putative histidinol-pho 100.0 7.9E-38 2.7E-42 308.8 26.4 310 92-455 14-349 (354)
63 2zc0_A Alanine glyoxylate tran 100.0 4.2E-37 1.4E-41 309.5 31.2 328 92-455 32-401 (407)
64 7aat_A Aspartate aminotransfer 100.0 9E-38 3.1E-42 313.9 25.8 323 92-456 26-401 (401)
65 3asa_A LL-diaminopimelate amin 100.0 7.3E-38 2.5E-42 314.7 25.1 323 92-456 31-391 (400)
66 2zy4_A L-aspartate beta-decarb 100.0 2.6E-38 9E-43 329.5 20.9 318 96-455 106-519 (546)
67 3t18_A Aminotransferase class 100.0 2.1E-37 7.3E-42 312.5 26.0 319 93-455 36-407 (413)
68 3fsl_A Aromatic-amino-acid ami 100.0 3.1E-37 1.1E-41 309.3 25.9 324 92-455 24-397 (397)
69 3ftb_A Histidinol-phosphate am 100.0 7.8E-37 2.7E-41 302.3 28.4 310 92-455 24-358 (361)
70 4eu1_A Mitochondrial aspartate 100.0 3.9E-37 1.3E-41 310.3 26.5 323 92-456 39-409 (409)
71 3if2_A Aminotransferase; YP_26 100.0 5.7E-37 2E-41 312.3 27.4 331 94-455 31-437 (444)
72 3op7_A Aminotransferase class 100.0 4.6E-37 1.6E-41 305.8 24.8 287 129-455 57-368 (375)
73 3meb_A Aspartate aminotransfer 100.0 8.5E-37 2.9E-41 311.6 24.3 324 93-455 48-441 (448)
74 3cq5_A Histidinol-phosphate am 100.0 1.2E-35 4.1E-40 295.3 28.8 314 96-456 32-366 (369)
75 1uu1_A Histidinol-phosphate am 100.0 1.5E-35 5.2E-40 290.6 29.1 302 94-455 19-335 (335)
76 3b1d_A Betac-S lyase; HET: PLP 100.0 2.2E-39 7.6E-44 324.8 0.0 322 95-456 32-391 (392)
77 1ajs_A Aspartate aminotransfer 100.0 8E-36 2.7E-40 300.7 25.8 322 92-455 28-408 (412)
78 2q7w_A Aspartate aminotransfer 100.0 3.4E-36 1.2E-40 301.6 22.9 321 93-455 25-396 (396)
79 4h51_A Aspartate aminotransfer 100.0 5.4E-36 1.8E-40 301.3 24.2 320 94-456 44-415 (420)
80 1yaa_A Aspartate aminotransfer 100.0 4.3E-35 1.5E-39 295.5 23.9 322 92-455 27-408 (412)
81 2ay1_A Aroat, aromatic amino a 100.0 5.6E-35 1.9E-39 292.7 23.1 319 92-454 24-392 (394)
82 3a2b_A Serine palmitoyltransfe 100.0 2E-32 6.9E-37 274.6 29.9 318 92-455 41-389 (398)
83 1e5e_A MGL, methionine gamma-l 100.0 2.1E-31 7E-36 268.1 24.0 319 97-455 21-392 (404)
84 1vjo_A Alanine--glyoxylate ami 100.0 7.6E-30 2.6E-34 255.1 26.8 282 143-456 66-393 (393)
85 3tqx_A 2-amino-3-ketobutyrate 100.0 6.2E-30 2.1E-34 256.1 25.7 317 92-455 41-393 (399)
86 1fc4_A 2-amino-3-ketobutyrate 100.0 5.5E-30 1.9E-34 257.0 24.6 315 92-455 43-394 (401)
87 2dr1_A PH1308 protein, 386AA l 100.0 2.7E-29 9.1E-34 250.2 28.6 281 143-455 52-376 (386)
88 1t3i_A Probable cysteine desul 100.0 1.5E-30 5.2E-35 262.2 19.1 324 94-455 27-410 (420)
89 1bs0_A Protein (8-amino-7-oxon 100.0 1.4E-29 4.7E-34 252.6 25.5 316 92-454 37-383 (384)
90 1eg5_A Aminotransferase; PLP-d 100.0 6.1E-30 2.1E-34 254.5 19.2 277 142-455 46-373 (384)
91 1kmj_A Selenocysteine lyase; p 100.0 7.8E-30 2.7E-34 255.7 19.6 318 94-455 22-402 (406)
92 1iug_A Putative aspartate amin 100.0 1.8E-28 6.3E-33 241.0 26.8 275 142-455 36-345 (352)
93 1elu_A L-cysteine/L-cystine C- 100.0 1.4E-29 4.8E-34 252.6 18.6 277 142-455 61-389 (390)
94 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 7.3E-31 2.5E-35 260.2 9.1 314 93-455 6-367 (371)
95 2w8t_A SPT, serine palmitoyltr 100.0 1.8E-28 6.2E-33 248.4 25.0 319 92-455 62-412 (427)
96 1m32_A 2-aminoethylphosphonate 100.0 3.1E-28 1E-32 240.4 25.1 312 96-456 5-363 (366)
97 2bwn_A 5-aminolevulinate synth 100.0 2.8E-28 9.7E-33 244.6 23.3 317 93-456 45-398 (401)
98 3zrp_A Serine-pyruvate aminotr 100.0 8.8E-28 3E-32 238.9 26.4 279 142-455 37-360 (384)
99 2eh6_A Acoat, acetylornithine 100.0 5.2E-29 1.8E-33 247.5 17.3 307 92-455 26-375 (375)
100 3ruy_A Ornithine aminotransfer 100.0 9.6E-29 3.3E-33 247.3 19.3 269 142-456 80-392 (392)
101 2ch1_A 3-hydroxykynurenine tra 100.0 8.7E-28 3E-32 240.3 25.5 280 142-455 53-380 (396)
102 2aeu_A Hypothetical protein MJ 100.0 1.2E-27 4.2E-32 238.1 26.2 310 91-455 24-368 (374)
103 2rfv_A Methionine gamma-lyase; 100.0 4.1E-28 1.4E-32 243.5 22.9 322 98-454 24-396 (398)
104 1ibj_A CBL, cystathionine beta 100.0 1.1E-27 3.9E-32 244.4 26.5 324 94-455 89-459 (464)
105 3lvm_A Cysteine desulfurase; s 100.0 4E-28 1.4E-32 245.1 22.8 277 143-455 71-396 (423)
106 2z9v_A Aspartate aminotransfer 100.0 8.9E-28 3E-32 239.9 24.2 278 142-455 44-368 (392)
107 3cai_A Possible aminotransfera 100.0 3.3E-28 1.1E-32 244.4 20.8 287 142-454 71-405 (406)
108 3i4j_A Aminotransferase, class 100.0 2.1E-28 7.2E-33 248.0 19.4 282 143-455 71-425 (430)
109 1sff_A 4-aminobutyrate aminotr 100.0 9.9E-29 3.4E-33 249.8 16.8 315 92-455 39-421 (426)
110 3kki_A CAI-1 autoinducer synth 100.0 2.1E-27 7.3E-32 239.0 26.3 314 92-455 57-401 (409)
111 2huf_A Alanine glyoxylate amin 100.0 3.7E-27 1.3E-31 235.5 26.9 278 142-455 54-380 (393)
112 4eb5_A Probable cysteine desul 100.0 4.1E-28 1.4E-32 241.2 19.3 276 142-455 45-370 (382)
113 4adb_A Succinylornithine trans 100.0 1.8E-27 6.3E-32 238.9 23.5 266 143-455 84-397 (406)
114 3f9t_A TDC, L-tyrosine decarbo 100.0 7.9E-28 2.7E-32 240.0 20.6 273 143-456 68-396 (397)
115 2yrr_A Aminotransferase, class 100.0 9.1E-28 3.1E-32 235.8 19.9 275 142-455 35-350 (353)
116 3nx3_A Acoat, acetylornithine 100.0 2.7E-27 9.1E-32 237.1 22.3 259 163-455 93-392 (395)
117 4hvk_A Probable cysteine desul 100.0 2.2E-27 7.4E-32 235.6 20.1 275 143-455 46-370 (382)
118 3kgw_A Alanine-glyoxylate amin 100.0 1.4E-26 4.7E-31 231.0 25.9 281 143-455 59-385 (393)
119 2ord_A Acoat, acetylornithine 100.0 8.1E-28 2.8E-32 241.0 16.9 267 143-455 85-394 (397)
120 3nnk_A Ureidoglycine-glyoxylat 100.0 1.8E-26 6.3E-31 231.7 26.0 279 143-455 49-387 (411)
121 1cs1_A CGS, protein (cystathio 100.0 2.2E-26 7.5E-31 229.9 26.3 284 142-455 54-384 (386)
122 3ffr_A Phosphoserine aminotran 99.9 7.4E-26 2.5E-30 223.1 29.0 264 163-456 61-362 (362)
123 3isl_A Purine catabolism prote 99.9 4.2E-26 1.4E-30 229.5 27.1 278 143-455 47-387 (416)
124 1zod_A DGD, 2,2-dialkylglycine 99.9 2.8E-27 9.6E-32 239.9 18.0 272 143-455 88-429 (433)
125 2bkw_A Alanine-glyoxylate amin 99.9 3.8E-26 1.3E-30 227.2 25.8 284 143-456 41-382 (385)
126 3gju_A Putative aminotransfera 99.9 1.8E-26 6.1E-31 236.0 23.8 278 143-455 94-453 (460)
127 2dkj_A Serine hydroxymethyltra 99.9 5.7E-26 2E-30 227.9 27.1 315 94-455 23-385 (407)
128 2eo5_A 419AA long hypothetical 99.9 4E-27 1.4E-31 237.9 18.5 262 143-455 89-415 (419)
129 1s0a_A Adenosylmethionine-8-am 99.9 1.7E-26 5.8E-31 233.9 22.8 268 143-456 89-422 (429)
130 3n5m_A Adenosylmethionine-8-am 99.9 4.6E-27 1.6E-31 239.8 18.7 261 166-456 110-450 (452)
131 1jg8_A L-ALLO-threonine aldola 99.9 1.7E-26 5.9E-31 226.8 21.9 299 94-455 3-343 (347)
132 1w23_A Phosphoserine aminotran 99.9 1.4E-26 4.9E-31 228.4 21.1 275 143-455 51-357 (360)
133 2pb2_A Acetylornithine/succiny 99.9 1.4E-26 4.7E-31 234.1 21.0 254 163-455 114-415 (420)
134 1vef_A Acetylornithine/acetyl- 99.9 3.6E-27 1.2E-31 236.1 16.0 271 142-456 89-395 (395)
135 1v72_A Aldolase; PLP-dependent 99.9 4E-26 1.4E-30 224.6 23.3 306 94-456 7-351 (356)
136 3cog_A Cystathionine gamma-lya 99.9 4.1E-26 1.4E-30 229.3 23.4 283 142-455 69-399 (403)
137 1pff_A Methionine gamma-lyase; 99.9 3.8E-26 1.3E-30 223.1 22.4 280 144-455 2-331 (331)
138 3dxv_A Alpha-amino-epsilon-cap 99.9 2.6E-26 8.7E-31 233.3 21.2 320 92-455 41-422 (439)
139 4ffc_A 4-aminobutyrate aminotr 99.9 3.3E-26 1.1E-30 233.6 21.1 321 92-455 62-446 (453)
140 4a6r_A Omega transaminase; tra 99.9 2.6E-26 8.9E-31 234.8 19.5 277 143-455 93-446 (459)
141 3l44_A Glutamate-1-semialdehyd 99.9 7.4E-27 2.5E-31 237.0 15.1 313 92-455 53-427 (434)
142 3oks_A 4-aminobutyrate transam 99.9 5.1E-26 1.8E-30 232.0 21.3 321 92-455 59-448 (451)
143 3ndn_A O-succinylhomoserine su 99.9 1.3E-25 4.4E-30 226.2 23.7 282 143-456 84-414 (414)
144 3qhx_A Cystathionine gamma-syn 99.9 4.6E-25 1.6E-29 220.9 26.6 285 142-456 68-392 (392)
145 2po3_A 4-dehydrase; external a 99.9 4.8E-25 1.6E-29 222.9 25.9 306 98-455 20-383 (424)
146 1b9h_A AHBA synthase, protein 99.9 8.5E-26 2.9E-30 225.5 20.0 280 142-455 40-385 (388)
147 1qgn_A Protein (cystathionine 99.9 1.1E-24 3.8E-29 220.8 27.7 282 143-455 117-442 (445)
148 3vax_A Putative uncharacterize 99.9 1.3E-26 4.4E-31 232.1 13.3 279 143-456 66-398 (400)
149 3pj0_A LMO0305 protein; struct 99.9 9.3E-26 3.2E-30 222.7 19.3 307 95-455 14-359 (359)
150 3lws_A Aromatic amino acid bet 99.9 6.3E-26 2.1E-30 223.8 17.8 280 129-456 41-357 (357)
151 1gc0_A Methionine gamma-lyase; 99.9 4.2E-25 1.4E-29 221.6 24.0 282 142-454 67-397 (398)
152 3a9z_A Selenocysteine lyase; P 99.9 3.3E-26 1.1E-30 231.8 15.8 277 143-455 64-425 (432)
153 1svv_A Threonine aldolase; str 99.9 1.6E-25 5.6E-30 220.4 20.3 306 94-456 13-356 (359)
154 2c0r_A PSAT, phosphoserine ami 99.9 2.2E-25 7.6E-30 220.4 20.6 278 143-455 48-358 (362)
155 3acz_A Methionine gamma-lyase; 99.9 1.1E-24 3.7E-29 217.9 25.7 282 142-456 61-387 (389)
156 3f0h_A Aminotransferase; RER07 99.9 6E-25 2E-29 218.1 22.5 280 143-455 55-371 (376)
157 1qz9_A Kynureninase; kynurenin 99.9 3.1E-25 1.1E-29 223.3 20.4 274 143-455 74-399 (416)
158 1z7d_A Ornithine aminotransfer 99.9 1.9E-25 6.5E-30 226.6 18.8 270 143-455 110-426 (433)
159 2oat_A Ornithine aminotransfer 99.9 9.8E-25 3.4E-29 221.7 23.6 311 92-455 74-436 (439)
160 2fyf_A PSAT, phosphoserine ami 99.9 3E-24 1E-28 215.2 26.5 275 143-455 81-395 (398)
161 3tfu_A Adenosylmethionine-8-am 99.9 3.4E-25 1.2E-29 226.2 19.7 267 143-455 121-450 (457)
162 2cb1_A O-acetyl homoserine sul 99.9 3.8E-24 1.3E-28 215.6 26.9 283 142-453 58-411 (412)
163 1n8p_A Cystathionine gamma-lya 99.9 5.2E-25 1.8E-29 220.5 19.8 285 142-455 57-392 (393)
164 3dod_A Adenosylmethionine-8-am 99.9 4.9E-25 1.7E-29 224.6 19.9 275 143-455 86-440 (448)
165 3k28_A Glutamate-1-semialdehyd 99.9 8.1E-26 2.8E-30 229.0 13.2 308 92-455 51-424 (429)
166 1mdo_A ARNB aminotransferase; 99.9 5.3E-24 1.8E-28 212.7 25.2 274 142-456 41-384 (393)
167 4e77_A Glutamate-1-semialdehyd 99.9 5E-25 1.7E-29 223.2 16.3 314 92-456 51-427 (429)
168 3fq8_A Glutamate-1-semialdehyd 99.9 2E-24 6.8E-29 218.5 19.6 313 92-455 50-424 (427)
169 3dr4_A Putative perosamine syn 99.9 1E-23 3.5E-28 210.7 24.0 311 93-456 21-391 (391)
170 3a8u_X Omega-amino acid--pyruv 99.9 1.7E-24 5.7E-29 220.6 18.5 254 163-455 110-444 (449)
171 3hmu_A Aminotransferase, class 99.9 6.7E-25 2.3E-29 224.9 15.0 253 163-455 116-449 (472)
172 2oga_A Transaminase; PLP-depen 99.9 7.9E-24 2.7E-28 212.3 22.4 305 94-455 30-393 (399)
173 3uwc_A Nucleotide-sugar aminot 99.9 7.1E-24 2.4E-28 210.3 21.1 307 94-455 6-368 (374)
174 3i5t_A Aminotransferase; pyrid 99.9 1E-23 3.4E-28 216.4 21.5 271 142-455 95-451 (476)
175 3mad_A Sphingosine-1-phosphate 99.9 9.6E-24 3.3E-28 218.8 21.1 276 143-455 138-466 (514)
176 2ez2_A Beta-tyrosinase, tyrosi 99.9 4.5E-23 1.6E-27 210.3 25.4 276 130-455 70-428 (456)
177 2vi8_A Serine hydroxymethyltra 99.9 2.4E-23 8.3E-28 208.6 22.6 270 147-456 76-385 (405)
178 2fq6_A Cystathionine beta-lyas 99.9 1.5E-22 5.3E-27 203.6 28.4 283 142-454 84-414 (415)
179 2cy8_A D-phgat, D-phenylglycin 99.9 9.5E-24 3.3E-28 215.3 19.3 305 92-455 55-432 (453)
180 2fnu_A Aminotransferase; prote 99.9 1.2E-22 4.3E-27 201.2 26.4 272 142-455 34-369 (375)
181 2e7u_A Glutamate-1-semialdehyd 99.9 7.1E-24 2.4E-28 214.3 17.8 268 144-455 92-424 (424)
182 3n0l_A Serine hydroxymethyltra 99.9 4.5E-22 1.6E-26 200.1 29.1 261 162-455 87-386 (417)
183 3ri6_A O-acetylhomoserine sulf 99.9 1.1E-22 3.7E-27 205.5 23.9 284 142-456 84-430 (430)
184 2epj_A Glutamate-1-semialdehyd 99.9 1.5E-23 5E-28 212.7 17.1 308 92-455 54-428 (434)
185 1ax4_A Tryptophanase; tryptoph 99.9 4.8E-23 1.7E-27 210.7 20.7 279 130-455 71-438 (467)
186 3mc6_A Sphingosine-1-phosphate 99.9 1.2E-22 4.1E-27 209.6 23.2 277 142-455 105-434 (497)
187 3e9k_A Kynureninase; kynurenin 99.9 1E-23 3.5E-28 215.8 14.4 281 142-456 113-459 (465)
188 2cjg_A L-lysine-epsilon aminot 99.9 7.4E-24 2.5E-28 215.9 13.0 266 143-455 104-445 (449)
189 1wyu_B Glycine dehydrogenase s 99.9 4.9E-23 1.7E-27 211.3 18.9 285 142-456 105-439 (474)
190 3nmy_A Xometc, cystathionine g 99.9 2.1E-22 7.1E-27 201.9 22.8 282 143-456 70-397 (400)
191 2c81_A Glutamine-2-deoxy-scyll 99.9 5.7E-22 1.9E-26 199.9 25.8 283 130-455 33-411 (418)
192 3ecd_A Serine hydroxymethyltra 99.9 1.7E-21 5.8E-26 196.3 27.2 257 166-455 97-394 (425)
193 3gbx_A Serine hydroxymethyltra 99.9 6.6E-22 2.3E-26 199.0 24.1 260 163-455 93-393 (420)
194 1rv3_A Serine hydroxymethyltra 99.9 3.1E-21 1.1E-25 198.2 29.4 277 143-455 89-428 (483)
195 3nyt_A Aminotransferase WBPE; 99.9 2.3E-21 7.9E-26 192.1 25.4 271 142-454 37-360 (367)
196 3frk_A QDTB; aminotransferase, 99.9 1.9E-21 6.7E-26 192.9 24.3 272 142-455 38-365 (373)
197 1o69_A Aminotransferase; struc 99.9 3.8E-21 1.3E-25 192.4 26.4 272 143-456 35-385 (394)
198 3h7f_A Serine hydroxymethyltra 99.9 1.5E-20 5.3E-25 191.3 29.5 257 169-455 113-411 (447)
199 2ctz_A O-acetyl-L-homoserine s 99.9 1.5E-21 5.1E-26 197.2 19.2 284 143-456 61-421 (421)
200 2yky_A Beta-transaminase; tran 99.8 5.1E-24 1.8E-28 216.5 0.0 267 142-456 142-458 (465)
201 3ju7_A Putative PLP-dependent 99.9 8.6E-21 3E-25 188.8 22.1 307 99-455 5-372 (377)
202 2x3l_A ORN/Lys/Arg decarboxyla 99.9 1.1E-21 3.9E-26 199.5 14.8 264 142-455 59-350 (446)
203 2z67_A O-phosphoseryl-tRNA(SEC 99.9 5.8E-21 2E-25 194.9 19.8 273 144-456 137-456 (456)
204 2dgk_A GAD-beta, GADB, glutama 99.9 2.4E-20 8.1E-25 190.1 21.4 285 143-455 80-431 (452)
205 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 4.8E-20 1.6E-24 187.0 23.4 280 142-456 64-434 (437)
206 2oqx_A Tryptophanase; lyase, p 99.9 2E-21 6.8E-26 198.7 12.7 277 130-455 69-439 (467)
207 3ke3_A Putative serine-pyruvat 99.8 6.6E-20 2.3E-24 182.5 20.9 262 164-455 52-373 (379)
208 1wyu_A Glycine dehydrogenase ( 99.8 1.2E-19 4.1E-24 184.2 20.5 311 96-456 66-438 (438)
209 2okj_A Glutamate decarboxylase 99.8 1.2E-19 4E-24 187.5 19.6 285 143-455 131-499 (504)
210 1ohv_A 4-aminobutyrate aminotr 99.8 5.3E-20 1.8E-24 188.5 16.0 269 142-455 108-468 (472)
211 3jzl_A Putative cystathionine 99.8 2.5E-18 8.6E-23 172.3 22.1 205 142-373 61-303 (409)
212 3i16_A Aluminum resistance pro 99.8 2.8E-18 9.7E-23 172.5 21.3 205 142-373 75-320 (427)
213 1js3_A DDC;, DOPA decarboxylas 99.8 9.8E-19 3.4E-23 179.8 18.3 284 143-455 112-471 (486)
214 3hbx_A GAD 1, glutamate decarb 99.8 3.8E-18 1.3E-22 176.0 22.2 286 143-455 94-441 (502)
215 3b8x_A WBDK, pyridoxamine 5-ph 99.8 6.3E-18 2.2E-22 168.6 23.1 266 142-451 36-389 (390)
216 2qma_A Diaminobutyrate-pyruvat 99.8 1.1E-18 3.7E-23 180.0 17.9 282 143-455 139-493 (497)
217 3hvy_A Cystathionine beta-lyas 99.8 6.7E-18 2.3E-22 169.8 22.6 204 142-373 76-320 (427)
218 3vp6_A Glutamate decarboxylase 99.8 1E-17 3.5E-22 173.1 21.8 286 130-454 126-501 (511)
219 1c4k_A Protein (ornithine deca 99.8 6.6E-17 2.3E-21 172.3 26.1 285 142-455 175-563 (730)
220 2a7v_A Serine hydroxymethyltra 99.8 1.7E-16 5.8E-21 162.1 27.2 258 166-455 123-438 (490)
221 2jis_A Cysteine sulfinic acid 99.8 3.7E-17 1.3E-21 169.3 20.7 285 143-456 147-513 (515)
222 4atq_A 4-aminobutyrate transam 99.7 2.6E-17 8.8E-22 166.8 14.3 261 163-456 125-453 (456)
223 3ht4_A Aluminum resistance pro 99.7 1.4E-16 4.7E-21 160.9 18.4 206 143-373 68-309 (431)
224 4ao9_A Beta-phenylalanine amin 99.7 1.5E-17 5.3E-22 167.8 10.8 267 142-455 129-443 (454)
225 2vyc_A Biodegradative arginine 99.7 1.5E-15 5.3E-20 163.1 23.8 285 142-455 207-602 (755)
226 4e1o_A HDC, histidine decarbox 99.7 6.8E-16 2.3E-20 158.3 18.5 288 130-455 109-475 (481)
227 3m5u_A Phosphoserine aminotran 99.7 6.3E-15 2.2E-19 144.9 24.4 275 143-455 53-357 (361)
228 4e3q_A Pyruvate transaminase; 99.7 2.2E-15 7.5E-20 153.2 21.0 256 163-455 128-465 (473)
229 3k40_A Aromatic-L-amino-acid d 99.7 1.5E-15 5E-20 155.6 17.4 281 142-455 111-468 (475)
230 3e77_A Phosphoserine aminotran 99.6 3E-14 1E-18 140.6 21.8 277 143-455 61-372 (377)
231 3qm2_A Phosphoserine aminotran 99.6 4.5E-13 1.5E-17 132.9 24.0 273 142-455 74-382 (386)
232 3n75_A LDC, lysine decarboxyla 99.5 3.4E-13 1.2E-17 142.7 22.7 280 142-454 197-556 (715)
233 4a0g_A Adenosylmethionine-8-am 99.5 2.4E-14 8.3E-19 154.9 10.7 197 230-456 595-826 (831)
234 3hl2_A O-phosphoseryl-tRNA(SEC 99.0 2.3E-08 8E-13 99.0 19.7 275 150-455 123-458 (501)
235 3ou5_A Serine hydroxymethyltra 99.0 1.6E-07 5.4E-12 92.8 24.0 258 165-455 123-438 (490)
236 3bc8_A O-phosphoseryl-tRNA(SEC 98.7 6.1E-07 2.1E-11 89.7 19.3 209 144-372 98-338 (450)
237 3dfz_A SIRC, precorrin-2 dehyd 49.4 94 0.0032 27.3 9.4 90 163-261 31-123 (223)
238 1pjq_A CYSG, siroheme synthase 26.5 73 0.0025 31.3 5.3 92 163-262 12-106 (457)
239 3eag_A UDP-N-acetylmuramate:L- 20.1 3.5E+02 0.012 24.8 8.5 88 166-260 8-96 (326)
No 1
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=100.00 E-value=8.5e-52 Score=419.77 Aligned_cols=393 Identities=32% Similarity=0.584 Sum_probs=307.7
Q ss_pred CCCchhhHHHHhhhhhccccCCCceeecccccccccCCCCCCcccccccc-----chhhhcCCCCeEEecCCCCCCCchh
Q 012785 36 NFDSSFSLQQQRRSVMAGCVLKEKEHVSERTHLSLSSSPSPSPSSSLTST-----DIQSQDGGERIINVDHGDPTMYEKY 110 (456)
Q Consensus 36 ~~w~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~l~~g~p~~~~~~ 110 (456)
++|+.+|++|||++|++.|++||+.|+|+ ...++ ...++|+ ..|+...+.++|+|+.|+|++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~ 72 (427)
T 2hox_A 2 MTWTMKAAEEAEAVANINCSEHGRAFLDG-----IISEG----SPKCECNTCYTGPDCSEKIQGCSADVASGDGLFLEEY 72 (427)
T ss_dssp CSTTHHHHHHHHHHHTSCCGGGEECCTTS-----CEETT----EECCEECTTEESTTSCEECTTCCEECCSCCCGGGHHH
T ss_pred cchhHHHHHHhHhhhccccCcCCceeecc-----ccccC----CcccccccccCCCCCcccCCCceEEecCcCCCCCCCH
Confidence 57999999999999999999999999993 43332 2455665 3566667778999999999998877
Q ss_pred Hhhhccccccc-ccCccccccccCCC-CcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-----
Q 012785 111 WQKVGDKTTIV-IPGWQSLSYFSDVR-NLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL----- 183 (456)
Q Consensus 111 ~~~~~~~~~~~-~~~~~~~~~y~~~~-G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l----- 183 (456)
++.+... ..+ ..+... ..|++.. | +...++||++||+|++..+....++++|++|+|+++++.+++.+|
T Consensus 73 ~v~~a~~-~~l~~~~~~~-~~Y~~~~~G--~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~ 148 (427)
T 2hox_A 73 WKQHKEA-SAVLVSPWHR-MSYFFNPVS--NFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMT 148 (427)
T ss_dssp HTTSHHH-HCEEECTTTT-CSSSCSSCC--TTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTT
T ss_pred HHHHhHH-hhhhcCCccc-ccCCCCCCC--ccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccc
Confidence 7765422 122 223322 2387776 7 011399999999999876665445789999999999999999999
Q ss_pred ---cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCccccccC---CCeEEEEcCCCCCCcccchHHhhhcCcEE
Q 012785 184 ---SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNKD---GPYIELVTSPNNPDGSVRQSVVNRSGGIL 257 (456)
Q Consensus 184 ---~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~---~~~~i~v~~P~NPtG~~~~~l~~~~~~~i 257 (456)
+++|| +|++++|+|+.+...++..|.+++.+.+|.+.++.. ++++++++|||||||.+++++++ ++..
T Consensus 149 ~~~~~~Gd----~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~~~l~--~~~~ 222 (427)
T 2hox_A 149 ATPDAPES----KVVAHAPFYPVFREQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHAVIK--GCKS 222 (427)
T ss_dssp TCTTSCCE----EEEECSSCCHHHHHHHHHSCBTTEEEEEEGGGGTTCSCGGGEEEEEESSCTTTCCCCCCSST--TCEE
T ss_pred cccCCCCC----EEEEeCCCcccHHHHHHHcCCeeeeecCCHHHHHHhhcCCceEEEEcCCCCCcccccHHHHc--CCCE
Confidence 89999 999999999999999999999999998888888653 57899999999999999996554 5678
Q ss_pred EeeecCCCCCCCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhC
Q 012785 258 VHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSD 337 (456)
Q Consensus 258 I~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~ 337 (456)
|.|++|+++.........+++|+++||||.+|++|+|+||++++++++++++.+.+.....+++.+.|.++..+|+...+
T Consensus 223 i~d~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~ 302 (427)
T 2hox_A 223 IYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVA 302 (427)
T ss_dssp EEECTTCSTTTSCCCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH
T ss_pred EEeecccCCCCCccccCCCceEEEEeChhcCCCCCceEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchh
Confidence 99999886322212122678999999999999999999999996689999999988777889999999999999984211
Q ss_pred -------CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcccc--C-CCCcccccccccCCCCCceEEeecCccH-
Q 012785 338 -------SCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVP--E-LPSQFCTFLGRAFEPQPAFAWLKCEQEI- 406 (456)
Q Consensus 338 -------~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~--~-~~g~~~~~~~~~~~~~~~f~~~~~~~~~- 406 (456)
+ .++++++.++.++++++.+.+.|++.+++.+. . |.+ ++++....+..++|+|++++.+.
T Consensus 303 ~l~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~--~~~~~~~~p~~g~f~~~~~~~~~~ 373 (427)
T 2hox_A 303 MVKTQKGT-------MRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEY--CNYFRRMRPPSPSYAWVKCEWEED 373 (427)
T ss_dssp HHHHHTTS-------TTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEE--ETTTTEEECCCCSEEEEEECSGGG
T ss_pred hhccccch-------hHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccc--cccccccCCCCceEEEEECCCcHH
Confidence 1 25688899999999999999999987555441 1 111 11111122334459999997533
Q ss_pred HHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 407 EDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 407 ~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
+.+..+++++||.++||+.|+.++++||||++.+++++++++++|+++++
T Consensus 374 ~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~~~~e~l~~~l~~l~~~~~ 423 (427)
T 2hox_A 374 KDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKDMVK 423 (427)
T ss_dssp CSHHHHHHHTTEECEEGGGGTSCTTEEEEECSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCEEEcCCCccCCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 34555667899999999999866789999998888999999999998864
No 2
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=100.00 E-value=8.3e-50 Score=400.80 Aligned_cols=358 Identities=54% Similarity=0.949 Sum_probs=290.3
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCC-----HHHHHHHHHHHHHhcCccCCCce
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLE-----PEFAKEVVRLHKVVGNAITENHH 165 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~-----~~lr~aia~~~~~~g~~~~~~~~ 165 (456)
..++++|+|+.|+|+++.++++..................|++..| . ++||++||+|++.+|....++++
T Consensus 19 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G-----~~~~~~~~lr~aia~~~~~~g~~~~~~~~ 93 (391)
T 3bwn_A 19 PMSDFVVNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTN-----LCWFLEPELEDAIKDLHGVVGNAATEDRY 93 (391)
T ss_dssp CTTTSCEECSSCCCGGGHHHHHHTGGGSCEEECTTTTCSSCSCTTS-----SSTTSCHHHHHHHHHHHHHHCSBCCSSSE
T ss_pred cCCCCeeEcCCCCCCCCCCHHHHHhHHHHhhcCccchhhcCCCCCC-----cccccCHHHHHHHHHHHHhcCCCCCCCCe
Confidence 3556789999999999888777765322222122223457999888 6 99999999999988888765579
Q ss_pred EEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCccccccCCCeEEEEcCCCCCCccc
Q 012785 166 IVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNKDGPYIELVTSPNNPDGSV 245 (456)
Q Consensus 166 I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~~~i~v~~P~NPtG~~ 245 (456)
|++|+|+++++.+++++++++||..+.+|++++|+|+.|...++..|++++.++.|.++++..+++++++++||||||.+
T Consensus 94 i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~k~v~l~~p~NPtG~~ 173 (391)
T 3bwn_A 94 IVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGDAWGFDKKGPYIELVTSPNNPDGTI 173 (391)
T ss_dssp EEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEEESTTCCCCSCEEEEEESSCTTTCCC
T ss_pred EEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecCCHHHcCCCCCEEEEECCCCCCCchh
Confidence 99999999999999999998887444479999999999999999999999999999888886678999999999999999
Q ss_pred chHHhhh-cC--cEEEeeecCCCCCCCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCCh
Q 012785 246 RQSVVNR-SG--GILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSK 322 (456)
Q Consensus 246 ~~~l~~~-~~--~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~ 322 (456)
+++++++ ++ ++||+||+|.+....++....+++|+++||||++|++|+|+||++++++++++.+...+.....+++.
T Consensus 174 ~~~l~~~~~~~~~~ii~De~y~~~~~~~l~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~~~~~ 253 (391)
T 3bwn_A 174 RETVVNRPDDDEAKVIHDFAYYWPHYTPITRRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSK 253 (391)
T ss_dssp CCCCC-----CCCEEEEECTTCSTTTSCCCCCBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCCCccccCCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHHhcccccCCCH
Confidence 9998876 66 99999999996444444445678999999999999999999999983389999999988767789999
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeec
Q 012785 323 DSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKC 402 (456)
Q Consensus 323 ~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~ 402 (456)
+.|.++..+|+...+... .....+++++++++.++++++.+.+.|++++++.+..|.|++++|++...++.+.|+|+++
T Consensus 254 ~~q~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~ 332 (391)
T 3bwn_A 254 ESQVRTAKILNVLKETCK-SESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGT 332 (391)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEE
T ss_pred HHHHHHHHHHhCcchhcc-ccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecC
Confidence 999999999984210000 0000146899999999999999999999886677777777776665544566777999999
Q ss_pred CccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 403 EQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 403 ~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
+. .+.+.++++++||.++||+.|+.+++++|||++.+++++++++++|++++
T Consensus 333 ~~-~~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~~~~e~i~~~~~~L~~~~ 384 (391)
T 3bwn_A 333 KE-ETDLVSELRRHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLERLANMK 384 (391)
T ss_dssp SS-SCCHHHHHHHTTEECEEGGGGTCCTTEEEEESCSCHHHHHHHHHHHHSCC
T ss_pred Cc-HHHHHHHHHHCCEEEccCCCCCCCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 74 34677888999999999999987678999999888899999999999876
No 3
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=100.00 E-value=1.5e-42 Score=347.06 Aligned_cols=327 Identities=20% Similarity=0.267 Sum_probs=264.2
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.++++|+|+.|+|+++.++.+.+... ..+..+ ...|++..| .++||++++++++. +|.... +++|++|+
T Consensus 29 ~~~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~---~~~y~~~~g-----~~~lr~~ia~~~~~~~g~~~~-~~~i~~t~ 98 (385)
T 1b5p_A 29 QGVDLVALTAGEPDFDTPEHVKEAAR-RALAQG---KTKYAPPAG-----IPELREALAEKFRRENGLSVT-PEETIVTV 98 (385)
T ss_dssp TTCCCEECCCSSCSSCCCHHHHHHHH-HHHHTT---CCSCCCTTC-----CHHHHHHHHHHHHHTTCCCCC-GGGEEEES
T ss_pred cCCCEEEecCCCCCCCCCHHHHHHHH-HHHhcC---CCCCCCCCC-----CHHHHHHHHHHHHHHhCCCCC-hHHEEEcC
Confidence 45678999999998876655543321 122222 235888778 59999999999975 565554 57999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc--------ccccc---CCCeEEEEcCCC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA--------KRFNK---DGPYIELVTSPN 239 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~--------~~l~~---~~~~~i~v~~P~ 239 (456)
|+++++++++++++++|| +|++++|+|+.+...++..|.+++.++.|. +.++. .+++++++++||
T Consensus 99 g~~~al~~~~~~l~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~ 174 (385)
T 1b5p_A 99 GGSQALFNLFQAILDPGD----EVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPN 174 (385)
T ss_dssp HHHHHHHHHHHHHCCTTC----EEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSC
T ss_pred ChHHHHHHHHHHhcCCCC----EEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCCC
Confidence 999999999999999999 999999999999999999999998877653 23332 257899999999
Q ss_pred CCCcccchH--------HhhhcCcEEEeeecCCCCCCC----CCCC-CCCCcEEEecCccccCCCCceEEEEEEeCHHHH
Q 012785 240 NPDGSVRQS--------VVNRSGGILVHDLAYYWPQYT----SITY-PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVA 306 (456)
Q Consensus 240 NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~----~~~~-~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~ 306 (456)
||||.+++. +|+++|+++|+||+|.+..+. ++.. ..+++|+++||||.+|++|+|+||++++ ++++
T Consensus 175 NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~-~~~~ 253 (385)
T 1b5p_A 175 NPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGP-KEVI 253 (385)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECC-HHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccceEEEEeC-HHHH
Confidence 999999872 788999999999999864331 2211 1278999999999999999999999996 9999
Q ss_pred HHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccc
Q 012785 307 KKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTF 386 (456)
Q Consensus 307 ~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~ 386 (456)
+.+.+.+...+.+++.+.|.++.++|+....+ .+++++.++.++++++.+.+.|+++ ++.+..+++++
T Consensus 254 ~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~--- 321 (385)
T 1b5p_A 254 KAMASVSRQSTTSPDTIAQWATLEALTNQEAS--------RAFVEMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAF--- 321 (385)
T ss_dssp HHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSBTT---
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHhCCCcc--------hHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeE---
Confidence 99988877677889999999999988610002 4678899999999999999999987 46777777777
Q ss_pred ccccCCCCCceEEeecC---ccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 387 LGRAFEPQPAFAWLKCE---QEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 387 ~~~~~~~~~~f~~~~~~---~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+|++++ .+.+.+.+.|.++||.++||..|+. ++++|||++.+++++++++++|+++++
T Consensus 322 ----------~~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f~~-~~~iRis~~~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 322 ----------YVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAA-FGHVRLSYATSEENLRKALERFARVLG 383 (385)
T ss_dssp ----------EEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTC-TTEEEEECCSCHHHHHHHHHHGGGGC-
T ss_pred ----------EEEEecCCCCCCHHHHHHHHHHCCeEEecccccCC-CCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence 8998885 2456677777799999999999986 789999998889999999999998763
No 4
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=100.00 E-value=3.6e-41 Score=337.85 Aligned_cols=323 Identities=18% Similarity=0.230 Sum_probs=262.9
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCc-cCCCc-eEE
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNA-ITENH-HIV 167 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~-~~~~~-~I~ 167 (456)
..++++|||+.|+|+++.++.+.+.... .......|++..| .++||+++++++.. +|.. .. ++ +|+
T Consensus 27 ~~g~~~i~l~~~~~~~~~~~~v~~a~~~-----~~~~~~~y~~~~g-----~~~lr~~la~~l~~~~g~~~~~-~~~~i~ 95 (396)
T 3jtx_A 27 PEGMEAVPLHIGEPKHPTPKVITDALTA-----SLHELEKYPLTAG-----LPELRQACANWLKRRYDGLTVD-ADNEIL 95 (396)
T ss_dssp CTTCCCEECSCCSCCSCCCHHHHHHHHH-----TGGGGGSCCCTTC-----CHHHHHHHHHHHHHHTTTCCCC-TTTSEE
T ss_pred ccCCCeEEeCCcCCCCCCCHHHHHHHHH-----HhhhccCCCCCCC-----cHHHHHHHHHHHHHhcCCCCCC-CCCeEE
Confidence 3467899999999999877766654221 1122456888888 59999999999954 4554 43 46 999
Q ss_pred EccCHHHHHHHHHHHhcCCC-----CCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-------ccccc---CCCeE
Q 012785 168 VGTGSTQLFQAALYALSSQD-----ASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-------KRFNK---DGPYI 232 (456)
Q Consensus 168 ~t~G~~~al~~~~~~l~~~g-----d~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-------~~l~~---~~~~~ 232 (456)
+|+|+++++++++++++.+| | +|+++.|+|+.+...++..|.+++.++.+. +.++. .++++
T Consensus 96 ~t~g~~~al~~~~~~~~~~g~~~~~d----~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~ 171 (396)
T 3jtx_A 96 PVLGSREALFSFVQTVLNPVSDGIKP----AIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWKRTKL 171 (396)
T ss_dssp EESSHHHHHHHHHHHHCCC---CCCC----EEEEEESCCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHTEEE
T ss_pred EcCCcHHHHHHHHHHHhCCCCccCCC----EEEEcCCCcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhccCcEE
Confidence 99999999999999999986 7 999999999999999999999998877643 33432 26789
Q ss_pred EEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCCC---CC---------CCCCCcEEEecCccccCCCC
Q 012785 233 ELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYTS---IT---------YPADHDLMLFTVSKSTGHAG 292 (456)
Q Consensus 233 i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~~---~~---------~~~~~~i~i~S~SK~~g~~G 292 (456)
+++++||||||.+++ ++|+++|+++|+||+|.+..+.+ .. ...+++++++||||.++++|
T Consensus 172 v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 251 (396)
T 3jtx_A 172 VFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPG 251 (396)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGG
T ss_pred EEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcc
Confidence 999999999999987 27889999999999999743332 11 12678999999999999999
Q ss_pred ceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 012785 293 TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSG 372 (456)
Q Consensus 293 ~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~ 372 (456)
+|+||++++ +++++.+.......+++++++.|.++.++|+ + ++++++.++.++++++.+.+.|++.
T Consensus 252 ~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~---------~~~~~~~~~~~~~~~~~l~~~l~~~- 317 (396)
T 3jtx_A 252 LRSGFVAGD-AELLKNFLLYRTYHGSAMSIPVQRASIAAWD---D---------EQHVIDNRRLYQEKFERVIPILQQV- 317 (396)
T ss_dssp GCCEEEEEC-HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHH---C---------CHHHHHHHHHHHHHHHHHHHHHTTT-
T ss_pred cceEEEEeC-HHHHHHHHHHHhhcccCCCHHHHHHHHHHhC---C---------HHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 999999996 9999999988877788999999999999987 2 4688999999999999999999875
Q ss_pred CccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHH-HhCCEEeecCCCCCC-------CCCeEEEEecCChhH
Q 012785 373 LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFL-KGNKILTRSGKHFGF-------SPKYVRISMLDRDEN 443 (456)
Q Consensus 373 ~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l-~~~gI~v~pg~~fg~-------~~~~iRis~~~~~e~ 443 (456)
+.+..+.+++ |+|++++. +...+.+.| +++||.+.||+.|+. ..+++||+++.++++
T Consensus 318 -~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~~~~~ 383 (396)
T 3jtx_A 318 -FDVKLPDASF-------------YIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVAT 383 (396)
T ss_dssp -SCCCCCSSSS-------------EEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCSCHHH
T ss_pred -CCccCCCeeE-------------EEEEECCCCCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcCCHHH
Confidence 3455566666 89999974 444555544 678999999999974 468999999889999
Q ss_pred HHHHHHHHHhhhC
Q 012785 444 YNLFVQRLSKILS 456 (456)
Q Consensus 444 i~~~l~~L~~~l~ 456 (456)
+++++++|+++++
T Consensus 384 i~~~l~~l~~~l~ 396 (396)
T 3jtx_A 384 CVKAAEDIVSLYR 396 (396)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999874
No 5
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=100.00 E-value=1.3e-41 Score=344.90 Aligned_cols=345 Identities=18% Similarity=0.189 Sum_probs=263.5
Q ss_pred ccccccchhhhcCCCCeEEecCCCCCCCchhHhhhcccccc-----cc-cCccccccccCCCCcccCCCHHHHHHHHHHH
Q 012785 80 SSLTSTDIQSQDGGERIINVDHGDPTMYEKYWQKVGDKTTI-----VI-PGWQSLSYFSDVRNLCWFLEPEFAKEVVRLH 153 (456)
Q Consensus 80 ~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~-----~~-~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~ 153 (456)
.++++.... ...++++|+|+.|.|+...++.......... +. ........|++..| +++||++|++++
T Consensus 18 ~~~~~~~~~-~~~~~~~i~l~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G-----~~~lr~~ia~~l 91 (425)
T 2r2n_A 18 PIRTMTDIL-SRGPKSMISLAGGLPNPNMFPFKTAVITVENGKTIQFGEEMMKRALQYSPSAG-----IPELLSWLKQLQ 91 (425)
T ss_dssp SGGGHHHHH-HHSCTTCEECCCCCCCGGGCSEEEEEEEETTSCCEEECHHHHHHHTSCCCTTC-----CHHHHHHHHHHH
T ss_pred hHHHHHHHh-hcCCCCeEEcCCcCCCchhCCHHHHHHHHhhcccccccccchhhhcCCCCCCC-----CHHHHHHHHHHH
Confidence 444444431 1123578999999998765442111100000 00 00111246888899 599999999999
Q ss_pred HH-hcCccCC------CceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC-----
Q 012785 154 KV-VGNAITE------NHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD----- 221 (456)
Q Consensus 154 ~~-~g~~~~~------~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d----- 221 (456)
.. +|....+ +++|++|+|+++++++++++++++|| +|++++|+|+.+...++..|.+++.++.|
T Consensus 92 ~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~d 167 (425)
T 2r2n_A 92 IKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGD----NVLLDEPAYSGTLQSLHPLGCNIINVASDESGIV 167 (425)
T ss_dssp HHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTC----EEEEESSCCHHHHHHHGGGTCEEEEECEETTEEC
T ss_pred HHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCC----EEEEeCCCcHHHHHHHHHcCCEEEEeCcCCCCCC
Confidence 54 5655432 36999999999999999999999999 99999999999999999999999887764
Q ss_pred cccccc---------------CCCeEEEE-cCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCC
Q 012785 222 AKRFNK---------------DGPYIELV-TSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSIT 272 (456)
Q Consensus 222 ~~~l~~---------------~~~~~i~v-~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~ 272 (456)
.+.++. .+++++++ ++||||||.+++. +|+++|+++|+||+|.+..+ .++.
T Consensus 168 ~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~ 247 (425)
T 2r2n_A 168 PDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFL 247 (425)
T ss_dssp HHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTG
T ss_pred HHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCcc
Confidence 333321 24677765 7899999999982 78899999999999974222 2222
Q ss_pred --CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHH
Q 012785 273 --YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFF 350 (456)
Q Consensus 273 --~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l 350 (456)
...+++|+++||||.++ +|+|+||++++ +++++.+.......+++++.+.|.++.++|+...++ .+.+++
T Consensus 248 ~~~~~~~~i~~~s~SK~~~-~GlRiG~~~~~-~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~------~~~~~~ 319 (425)
T 2r2n_A 248 SMDVDGRVIRADSFSKIIS-SGLRIGFLTGP-KPLIERVILHIQVSTLHPSTFNQLMISQLLHEWGEE------GFMAHV 319 (425)
T ss_dssp GGCTTSCEEEEEESTTTTC-STTCCEEEEEE-HHHHHHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHH------HHHHHH
T ss_pred ccCCCCCEEEEccchhhcc-CccceEEEecC-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccc------hHHHHH
Confidence 23468999999999999 99999999998 899999998887778899999999999999843211 135788
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCc-cccCCCCcccccccccCCCCCceEEeecCc--cH-HHHHHHHHhCCEEeecCCC
Q 012785 351 EFTNHQMSTRWKQLRMAVQKS-GLF-SVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EI-EDCESFLKGNKILTRSGKH 425 (456)
Q Consensus 351 ~~~~~~~~~~~~~l~~~L~~~-~~~-~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~-~~~~~~l~~~gI~v~pg~~ 425 (456)
+++++.++++++.+.+.|++. +++ .+..|.+++ |+|++++. +. +.+.+.+.++||.++||..
T Consensus 320 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~-------------~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~ 386 (425)
T 2r2n_A 320 DRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGM-------------FLWIKVKGINDVKELIEEKAVKMGVLMLPGNA 386 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSS-------------EEEEEETTCSCCHHHHHTHHHHTTEECEEGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceE-------------EEEEEeCCCCCHHHHHHHHHHHCCcEEechhh
Confidence 999999999999999999874 444 455666776 89999964 33 4467888899999999999
Q ss_pred CCC----CCCeEEEEec-CChhHHHHHHHHHHhhh
Q 012785 426 FGF----SPKYVRISML-DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 426 fg~----~~~~iRis~~-~~~e~i~~~l~~L~~~l 455 (456)
|+. ..+++||+++ .+++++++++++|++++
T Consensus 387 f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l 421 (425)
T 2r2n_A 387 FYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLI 421 (425)
T ss_dssp GSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 974 2589999998 59999999999999876
No 6
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=100.00 E-value=9.9e-41 Score=340.64 Aligned_cols=327 Identities=16% Similarity=0.139 Sum_probs=260.7
Q ss_pred CCCeEEecCCCCCCC--chhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHH-HHhcCccCCCceEEEc
Q 012785 93 GERIINVDHGDPTMY--EKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLH-KVVGNAITENHHIVVG 169 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~--~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~-~~~g~~~~~~~~I~~t 169 (456)
.+++|||+.|.|+.. +++.+.+... ..+.........|++..| .++||++|++++ ..+|.+ ++++|++|
T Consensus 75 ~~~~i~l~~g~p~~~~~p~~~v~~a~~-~~l~~~~~~~~~Y~~~~g-----~~~lr~~ia~~~~~~~g~~--~~~~v~~t 146 (448)
T 3aow_A 75 TSDIISLAGGLPNPKTFPKEIIRDILV-EIMEKYADKALQYGTTKG-----FTPLRETLMKWLGKRYGIS--QDNDIMIT 146 (448)
T ss_dssp TSSSEECCCCCCCGGGSCHHHHHHHHH-HHHHHSHHHHHSCCCTTC-----CHHHHHHHHHHHHHHHCCC--TTSEEEEE
T ss_pred CCCcEeCCCCCCCchhCCHHHHHHHHH-HHHHhhhHHHhCCCCCCC-----cHHHHHHHHHHHHHhcCcC--ChhhEEEe
Confidence 357899999998743 2333332211 122222112346888778 599999999999 556665 35799999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC-----cccccc-------C--CCeEE-E
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD-----AKRFNK-------D--GPYIE-L 234 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d-----~~~l~~-------~--~~~~i-~ 234 (456)
+|+++++++++++++++|| +|++++|+|+.+...++..|.+++.++.| .+.++. . ++++| +
T Consensus 147 ~G~~~al~~~~~~l~~~Gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~L~~~l~~~~~~~~~~k~v~~ 222 (448)
T 3aow_A 147 SGSQQALDLIGRVFLNPGD----IVVVEAPTYLAALQAFNFYEPQYIQIPLDDEGMKVEILEEKLKELKSQGKKVKVVYT 222 (448)
T ss_dssp SSHHHHHHHHHHHHCCTTC----EEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CcHHHHHHHHHHHHcCCCC----EEEEeCCChHHHHHHHHHcCCEEEEeccCCCCCCHHHHHHHHhhhhccCCCCeEEEE
Confidence 9999999999999999999 99999999999999999999999887764 333321 2 57887 5
Q ss_pred EcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCC-----CCCC--CCCCCcEEEecCccccCCCCceEEEEE
Q 012785 235 VTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQY-----TSIT--YPADHDLMLFTVSKSTGHAGTRIGWAL 299 (456)
Q Consensus 235 v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~-----~~~~--~~~~~~i~i~S~SK~~g~~G~RiG~l~ 299 (456)
+++||||||.+++ ++|+++|++||+||+|.+..+ .++. ...+++++++||||.++ +|+|+||++
T Consensus 223 ~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~GlriG~v~ 301 (448)
T 3aow_A 223 VPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-PGFRIGWMV 301 (448)
T ss_dssp CCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-GGGCCEEEE
T ss_pred CCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-ccccEEEEE
Confidence 7899999999987 278999999999999986432 2222 23468999999999999 999999999
Q ss_pred EeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc-C-Ccccc
Q 012785 300 VKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS-G-LFSVP 377 (456)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~-~~~~~ 377 (456)
++ +++++++.......+++++++.|.++.++|+ ++ ..+++++++++.++++++.+.+.|++. + ++.+.
T Consensus 302 ~~-~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~---~~------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~ 371 (448)
T 3aow_A 302 GD-PGIIRKMEIAKQSTDLCTNVFGQVVAWRYVD---GG------YLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWT 371 (448)
T ss_dssp EC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH---TT------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEC
T ss_pred eC-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---hC------CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe
Confidence 97 9999999888776778899999999999997 22 136789999999999999999999874 5 46776
Q ss_pred CCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCC---CCCeEEEEecC-ChhHHHHHHHHH
Q 012785 378 ELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGF---SPKYVRISMLD-RDENYNLFVQRL 451 (456)
Q Consensus 378 ~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~---~~~~iRis~~~-~~e~i~~~l~~L 451 (456)
.|.+++ |+|++++. +...+.+.|.++||.++||..|+. .++++||+++. +++++++++++|
T Consensus 372 ~p~~g~-------------~~~v~~~~~~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~~~~L 438 (448)
T 3aow_A 372 KPEGGM-------------FIWVTLPDGIDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRL 438 (448)
T ss_dssp CCSBSS-------------EEEEECSTTCCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSSSCTHHHHHHHHHH
T ss_pred CCCccE-------------EEEEEcCCCCCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHHHHHHHH
Confidence 777776 89999974 456677777788999999999963 46899999987 789999999999
Q ss_pred Hhhh
Q 012785 452 SKIL 455 (456)
Q Consensus 452 ~~~l 455 (456)
++++
T Consensus 439 ~~~l 442 (448)
T 3aow_A 439 AETI 442 (448)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 7
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=100.00 E-value=7.4e-41 Score=333.24 Aligned_cols=317 Identities=15% Similarity=0.203 Sum_probs=260.6
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.+ ++|||+.|+|+++.++.+.+..... + .....|++..| .++||+++++++.. +|.... +++|++|+
T Consensus 22 ~g-~~i~l~~~~~~~~~~~~v~~a~~~~-~----~~~~~y~~~~g-----~~~lr~~la~~l~~~~g~~~~-~~~i~~t~ 89 (376)
T 3ezs_A 22 KK-RGLDLGIGEPQFETPKFIQDALKNH-T----HSLNIYPKSAF-----EESLRAAQRGFFKRRFKIELK-ENELISTL 89 (376)
T ss_dssp SS-CCCBCSSCCCCSCCCHHHHHHHHTT-G----GGGGSCCCTTC-----CHHHHHHHHHHHHHHHSCCCC-GGGEEEES
T ss_pred cC-CEEEeCCCCCCCCCCHHHHHHHHHh-h----hhcCCCCCCCC-----CHHHHHHHHHHHHHHhCCCCC-HHHEEECc
Confidence 44 8899999999988777666542211 1 23456888888 59999999999954 566544 57999999
Q ss_pred CHHHHHHHHHHHhcCC--CCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc-c----ccc---CCCeEEEEcCCCC
Q 012785 171 GSTQLFQAALYALSSQ--DASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK-R----FNK---DGPYIELVTSPNN 240 (456)
Q Consensus 171 G~~~al~~~~~~l~~~--gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~-~----l~~---~~~~~i~v~~P~N 240 (456)
|+++++++++++++++ || +|+++.|+|+.+...++..|.+++.++.+.+ + ++. .+++++++++|||
T Consensus 90 g~~~al~~~~~~~~~~~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~n 165 (376)
T 3ezs_A 90 GSREVLFNFPSFVLFDYQNP----TIAYPNPFYQIYEGAAKFIKAKSLLMPLTKENDFTPSLNEKELQEVDLVILNSPNN 165 (376)
T ss_dssp SSHHHHHHHHHHHTTTCSSC----EEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTSCCCCCHHHHHHCSEEEECSSCT
T ss_pred CcHHHHHHHHHHHcCCCCCC----EEEEecCCcHhHHHHHHHcCCEEEEcccCCCCCcchhHHhhhccCCCEEEEcCCCC
Confidence 9999999999999999 99 9999999999999999999999998887755 2 222 2578999999999
Q ss_pred CCcccchH--------HhhhcCcEEEeeecCCCCCCCC--CC--C--------CCCCcEEEecCccccCCCCceEEEEEE
Q 012785 241 PDGSVRQS--------VVNRSGGILVHDLAYYWPQYTS--IT--Y--------PADHDLMLFTVSKSTGHAGTRIGWALV 300 (456)
Q Consensus 241 PtG~~~~~--------l~~~~~~~iI~De~y~~~~~~~--~~--~--------~~~~~i~i~S~SK~~g~~G~RiG~l~~ 300 (456)
|||.+++. +|+++|+++|+||+|.+..+.. .. . ..+++++++||||.+|++|+|+||+++
T Consensus 166 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 245 (376)
T 3ezs_A 166 PTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAG 245 (376)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEE
T ss_pred CcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEee
Confidence 99999872 6889999999999999743322 11 1 467899999999999999999999999
Q ss_pred eCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC
Q 012785 301 KDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELP 380 (456)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 380 (456)
+ +++++.+.......+++++++.|.++.++|+ + .+++++.++.++++++.+.+.|+ + +. .+.
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~---------~~~~~~~~~~~~~~~~~l~~~l~--~-~~--~~~ 307 (376)
T 3ezs_A 246 D-SRLLEKYKAFRAYLGYTSANAIQKASEAAWL---D---------DRHAEFFRNIYANNLKLARKIFK--N-TL--IYP 307 (376)
T ss_dssp C-HHHHHHHHHHHTTTCCCCCHHHHHHHHHHHH---C---------SHHHHHHHHHHHHHHHHHHHHST--T-CC--CCS
T ss_pred C-HHHHHHHHHHHhhhcCCCChHHHHHHHHHHh---C---------cHHHHHHHHHHHHHHHHHHHHhc--C-CC--CCC
Confidence 6 9999999988877788999999999999998 2 35688999999999999999987 2 32 445
Q ss_pred CcccccccccCCCCCceEEeecCccHHHHHHHHHh-CCEEeecCCCCCC---CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 381 SQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKG-NKILTRSGKHFGF---SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 381 g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~-~gI~v~pg~~fg~---~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
+++ |+|++++ +...+.+.|.+ +||.++||+.|+. .++++||+++.+++++++++++|+++++
T Consensus 308 ~~~-------------~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~ 373 (376)
T 3ezs_A 308 YSF-------------YVYLPVQ-NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETYRE 373 (376)
T ss_dssp BSS-------------EEEEECS-CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred cce-------------EEEEECC-CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 555 8999998 45556666665 9999999999973 5789999998899999999999998874
No 8
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=100.00 E-value=9.8e-41 Score=334.37 Aligned_cols=325 Identities=18% Similarity=0.224 Sum_probs=260.4
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEc
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVG 169 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t 169 (456)
..++.+|||+.|+|+++.++.+.+... ..+..+ ...|++..| .++||++++++++. +|.... +++|++|
T Consensus 28 ~~g~~~i~l~~g~~~~~~~~~v~~a~~-~~~~~~---~~~y~~~~g-----~~~lr~~ia~~~~~~~g~~~~-~~~v~~t 97 (391)
T 3h14_A 28 EAGRRIIHMEVGQPGTGAPRGAVEALA-KSLETD---ALGYTVALG-----LPALRQRIARLYGEWYGVDLD-PGRVVIT 97 (391)
T ss_dssp HTTCCCEECCCSSCSSCSCHHHHHHHH-HHHC-------------C-----CHHHHHHHHHHHHHHHCCCCC-GGGEEEE
T ss_pred hcCCCeEEccCCCCCCCCCHHHHHHHH-HHHhcC---CCCCCCCCC-----hHHHHHHHHHHHHHHhCCCCC-HHHEEEe
Confidence 467789999999999887765554322 122222 246888778 59999999999964 565554 5799999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc--------cccccCCCeEEEEcCCCCC
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA--------KRFNKDGPYIELVTSPNNP 241 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~--------~~l~~~~~~~i~v~~P~NP 241 (456)
+|+++++++++++++++|| +|+++.|+|+.+...++..|.+++.++.|. +.++..+++++++++||||
T Consensus 98 ~g~~~al~~~~~~l~~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~v~i~~p~np 173 (391)
T 3h14_A 98 PGSSGGFLLAFTALFDSGD----RVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGLDLAGLMVASPANP 173 (391)
T ss_dssp SSHHHHHHHHHHHHCCTTC----EEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTSCCSEEEEESSCTT
T ss_pred cChHHHHHHHHHHhcCCCC----EEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhcCCeEEEECCCCCC
Confidence 9999999999999999999 999999999999999999999998777643 3444446789999999999
Q ss_pred Ccccch--------HHhhhcCcEEEeeecCCCCCCC----CCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHH
Q 012785 242 DGSVRQ--------SVVNRSGGILVHDLAYYWPQYT----SITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKM 309 (456)
Q Consensus 242 tG~~~~--------~l~~~~~~~iI~De~y~~~~~~----~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l 309 (456)
||.+++ ++|+++|+++|+||+|.+..+. +.....+++++++||||.+|++|+|+||++++ +++++.+
T Consensus 174 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~~ 252 (391)
T 3h14_A 174 TGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVGWMVVP-EDQVRVV 252 (391)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCEEEECC-GGGHHHH
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCccceeEEEEeC-HHHHHHH
Confidence 999987 2788999999999999864332 22233578999999999999999999999996 8899999
Q ss_pred HHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccc
Q 012785 310 TKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGR 389 (456)
Q Consensus 310 ~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~ 389 (456)
.......+++++++.|.++.++|+ . ++++++.++.++++++.+.+.|++++...+..+.+++
T Consensus 253 ~~~~~~~~~~~~~~~~~a~~~~l~----~--------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~------ 314 (391)
T 3h14_A 253 ERIAQNMFICAPHASQVAALAALD----C--------DAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAF------ 314 (391)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHTT----C--------HHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCBTT------
T ss_pred HHHHhhhccCCCHHHHHHHHHHhC----C--------hHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCeeE------
Confidence 988887888999999999988886 2 6789999999999999999999988655555666766
Q ss_pred cCCCCCceEEeecCc---cHHHHHHHH-HhCCEEeecCCCCCC--CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 390 AFEPQPAFAWLKCEQ---EIEDCESFL-KGNKILTRSGKHFGF--SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 390 ~~~~~~~f~~~~~~~---~~~~~~~~l-~~~gI~v~pg~~fg~--~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|+|++++. +.+.+.+.| +++||.++||+.|+. .++++||+++.+++++++++++|++++
T Consensus 315 -------~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~~ 379 (391)
T 3h14_A 315 -------YVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAFM 379 (391)
T ss_dssp -------EEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred -------EEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 89998853 455565554 456999999999975 478999999889999999999999876
No 9
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-40 Score=340.39 Aligned_cols=326 Identities=16% Similarity=0.239 Sum_probs=262.0
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.+.++|||+.|.|++++++.+.+... ..+.. . ....|++..| .++||+++++++.. +|.... +++|++|+
T Consensus 55 ~~~~~i~l~~g~~~~~~~~~v~~a~~-~~~~~-~-~~~~Y~~~~g-----~~~lr~~ia~~l~~~~g~~~~-~~~v~~t~ 125 (447)
T 3b46_A 55 QGRELINLGQGFFSYSPPQFAIKEAQ-KALDI-P-MVNQYSPTRG-----RPSLINSLIKLYSPIYNTELK-AENVTVTT 125 (447)
T ss_dssp TTSCCEECCCCSCSSCCCHHHHHHHH-HHTTS-G-GGGSCCCTTC-----CHHHHHHHHHHHTTTTTSCCC-GGGEEEES
T ss_pred cCCCeEEccCCCCCCCCCHHHHHHHH-HHHhC-c-CCCCCCCCCC-----CHHHHHHHHHHHHHhcCCCCC-hhhEEEeC
Confidence 45689999999999887766654322 11221 1 1346888888 59999999999954 455554 46999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC------------------cccccc---CC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD------------------AKRFNK---DG 229 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d------------------~~~l~~---~~ 229 (456)
|+++++.+++++++++|| +|++++|+|+.+...++..|.+++.++.+ .+.++. .+
T Consensus 126 G~~~al~~~~~~l~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 201 (447)
T 3b46_A 126 GANEGILSCLMGLLNAGD----EVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSK 201 (447)
T ss_dssp HHHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTT
T ss_pred CHHHHHHHHHHHHcCCCC----EEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhccC
Confidence 999999999999999999 99999999999999999999998766543 333433 36
Q ss_pred CeEEEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCC----CCCC----CCCCcEEEecCccccCCCCc
Q 012785 230 PYIELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT----SITY----PADHDLMLFTVSKSTGHAGT 293 (456)
Q Consensus 230 ~~~i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~----~~~~----~~~~~i~i~S~SK~~g~~G~ 293 (456)
+++|++++||||||.+++ ++|+++|+++|+||+|.+..+. ++.. ..+++++++|+||.+|++|+
T Consensus 202 ~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~ 281 (447)
T 3b46_A 202 TKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGW 281 (447)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTTS
T ss_pred CeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcch
Confidence 789999999999999986 2789999999999999864332 2221 24689999999999999999
Q ss_pred eEEEEEE-eCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 012785 294 RIGWALV-KDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSG 372 (456)
Q Consensus 294 RiG~l~~-~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~ 372 (456)
|+||+++ + +++++.+.......+++.+++.|.++.++|+... .+++++++++.++++++.+.+.|++++
T Consensus 282 riG~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~---------~~~~~~~~~~~~~~~~~~l~~~L~~~g 351 (447)
T 3b46_A 282 RIGWVLSLN-AELLSYAAKAHTRICFASPSPLQEACANSINDAL---------KIGYFEKMRQEYINKFKIFTSIFDELG 351 (447)
T ss_dssp CCEEEECSC-HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH---------HHTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhEEEEeCC-HHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCc---------chHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999 6 9999999888777788999999999999988421 156788999999999999999999874
Q ss_pred CccccCCCCcccccccccCCCCCceEEeecCc-----------------cHHHHHH-HHHhCCEEeecCCCCCCC-----
Q 012785 373 LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-----------------EIEDCES-FLKGNKILTRSGKHFGFS----- 429 (456)
Q Consensus 373 ~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-----------------~~~~~~~-~l~~~gI~v~pg~~fg~~----- 429 (456)
+.+..|.+++ |+|++++. +...+.+ +++++||.+.||+.|+..
T Consensus 352 -~~~~~~~~g~-------------~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~ 417 (447)
T 3b46_A 352 -LPYTAPEGTY-------------FVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKA 417 (447)
T ss_dssp -CCEECCSBSS-------------EEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGG
T ss_pred -CeecCCCeeE-------------EEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCC
Confidence 6666677777 89998853 2334555 445799999999999642
Q ss_pred -CCeEEEEecCChhHHHHHHHHHHhh
Q 012785 430 -PKYVRISMLDRDENYNLFVQRLSKI 454 (456)
Q Consensus 430 -~~~iRis~~~~~e~i~~~l~~L~~~ 454 (456)
++++||+++.++|++++++++|+++
T Consensus 418 ~~~~iRls~~~~~e~l~~~~~~l~~~ 443 (447)
T 3b46_A 418 AENLLRFAVCKDDAYLENAVERLKLL 443 (447)
T ss_dssp GTTEEEEECCSCHHHHHHHHHHGGGG
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHHH
Confidence 6899999988999999999999875
No 10
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=100.00 E-value=2.5e-40 Score=333.25 Aligned_cols=332 Identities=14% Similarity=0.226 Sum_probs=264.3
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.+.++|+|+.|+|++++++.+.+... ..+... ....|++..| ..+||++++++++. +|....+.++|++|+
T Consensus 21 ~~~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~--~~~~y~~~~g-----~~~l~~~la~~~~~~~~~~~~~~~~i~~~~ 92 (410)
T 3e2y_A 21 ADPSVVNLGQGFPDISPPSYVKEELS-KAAFID--NMNQYTRGFG-----HPALVKALSCLYGKIYQRQIDPNEEILVAV 92 (410)
T ss_dssp TSTTSEECSSCCCCSCCCHHHHHHHH-HHHTCG--GGGSCCCTTC-----CHHHHHHHHHHHHHHHTSCCCTTTSEEEES
T ss_pred cCCCeEEecCCCCCCCCCHHHHHHHH-HHHhCc--cccCCCCCCC-----hHHHHHHHHHHHHHHhCCCCCCCCCEEEeC
Confidence 44678999999999887766655322 112221 2346888777 59999999999964 666665437999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC-----------------cccccc---CCC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD-----------------AKRFNK---DGP 230 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d-----------------~~~l~~---~~~ 230 (456)
|+++++..++++++++|| +|+++.|+|+.+...++..|.+++.++.+ .+.++. .++
T Consensus 93 g~~~a~~~~~~~~~~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~ 168 (410)
T 3e2y_A 93 GAYGSLFNSIQGLVDPGD----EVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKT 168 (410)
T ss_dssp HHHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTE
T ss_pred CcHHHHHHHHHHhcCCCC----EEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCCCc
Confidence 999999999999999999 99999999999999999999988776543 344433 367
Q ss_pred eEEEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCC-----CC---CCCCCCcEEEecCccccCCCCce
Q 012785 231 YIELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT-----SI---TYPADHDLMLFTVSKSTGHAGTR 294 (456)
Q Consensus 231 ~~i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~-----~~---~~~~~~~i~i~S~SK~~g~~G~R 294 (456)
+++++++||||||.+++ ++|+++|+++|+||+|.+..+. ++ ....+++++++||||.+|++|+|
T Consensus 169 ~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r 248 (410)
T 3e2y_A 169 KAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWK 248 (410)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGC
T ss_pred eEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCce
Confidence 89999999999999986 2789999999999999853221 22 22346789999999999999999
Q ss_pred EEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 012785 295 IGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLF 374 (456)
Q Consensus 295 iG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~ 374 (456)
+||++++ +++++.+.......+++++++.|.++.++|+....... ..++++++.++.++++++.+.+.|++++ +
T Consensus 249 ~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~ 322 (410)
T 3e2y_A 249 LGWSIGP-AHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMD----DPECYFNSLPKELEVKRDRMVRLLNSVG-L 322 (410)
T ss_dssp CEEEECC-HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTT----STTSHHHHHHHHHHHHHHHHHHHHHTTT-C
T ss_pred EEEEEEC-HHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhcccc----chHHHHHHHHHHHHHHHHHHHHHHHHCC-C
Confidence 9999996 99999999888777889999999999999873111000 1257889999999999999999999874 6
Q ss_pred cccCCCCcccccccccCCCCCceEEeecCc-----c---------HHHHHHHHHhCCEEeecCCCCCC------CCCeEE
Q 012785 375 SVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-----E---------IEDCESFLKGNKILTRSGKHFGF------SPKYVR 434 (456)
Q Consensus 375 ~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-----~---------~~~~~~~l~~~gI~v~pg~~fg~------~~~~iR 434 (456)
.+..+.+++ |+|++++. + .+.+..+++++||.+.||+.|+. ..+++|
T Consensus 323 ~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iR 389 (410)
T 3e2y_A 323 KPIVPDGGY-------------FIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVR 389 (410)
T ss_dssp EEEBCSBSS-------------EEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEE
T ss_pred eecCCCccE-------------EEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEE
Confidence 666677777 89988742 1 14455677889999999999964 358999
Q ss_pred EEecCChhHHHHHHHHHHhh
Q 012785 435 ISMLDRDENYNLFVQRLSKI 454 (456)
Q Consensus 435 is~~~~~e~i~~~l~~L~~~ 454 (456)
|+++.+++++++++++|+++
T Consensus 390 is~~~~~e~l~~~l~~l~~~ 409 (410)
T 3e2y_A 390 FCFIKKDSTLDAAEEIFRAW 409 (410)
T ss_dssp EECCCCHHHHHHHHHHHHTC
T ss_pred EEEcCCHHHHHHHHHHHHhc
Confidence 99988999999999999875
No 11
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=100.00 E-value=1.4e-40 Score=334.26 Aligned_cols=320 Identities=14% Similarity=0.052 Sum_probs=240.0
Q ss_pred CCCCeEEecCCCC---C--CCchhHhhhccccccc-ccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCc-
Q 012785 92 GGERIINVDHGDP---T--MYEKYWQKVGDKTTIV-IPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENH- 164 (456)
Q Consensus 92 ~~~~~i~l~~g~p---~--~~~~~~~~~~~~~~~~-~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~- 164 (456)
..+++|||+.|.| + +++++.+.++.. .+ ..+ ....|++..| .++||++|++|+...+....+++
T Consensus 27 ~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~--~~~~~~--~~~~Y~~~~G-----~~~lr~aia~~~~~~~~~~~~~~~ 97 (405)
T 3k7y_A 27 TCEEKINLSIGVCCNDDGDLHIFDSVLNADK--LVTENY--KEKPYLLGNG-----TEDFSTLTQNLIFGNNSKYIEDKK 97 (405)
T ss_dssp SCSSCEECSCSSCBCTTSSBCCCHHHHHHHH--HHHHHC--CCCCCCTTSS-----CHHHHHHHHHHHHCSSCTTTTTTC
T ss_pred CCcCcEEeeeeeeECCCCCCcccHHHHHHHH--HhcCCC--CCCCCCCCCC-----cHHHHHHHHHHHcCCCCccccccc
Confidence 3467899999963 3 233444444322 11 111 1346999999 59999999999954433322344
Q ss_pred -eEEEccCHHHHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc--------Ccccccc-----C
Q 012785 165 -HIVVGTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG--------DAKRFNK-----D 228 (456)
Q Consensus 165 -~I~~t~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~--------d~~~l~~-----~ 228 (456)
+|++|+|+++++.+++.++.. + | +|++++|+|+.|...++..|++++.+++ |.+.++. .
T Consensus 98 i~i~~t~G~~~al~~~~~~l~~~~~-d----~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 172 (405)
T 3k7y_A 98 ICTIQCIGGTGAIFVLLEFLKMLNV-E----TLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIP 172 (405)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHTTTC-C----EEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHSC
T ss_pred eEEEEcCchHHHHHHHHHHHHhcCC-C----EEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhCC
Confidence 469999999999999999987 8 8 9999999999999999999999987765 2333322 2
Q ss_pred CCeEEEEcCC-CCCCcccchH--------HhhhcCcEEEeeecCCCCCCCC-------C---CCCCCCcEEEecCccccC
Q 012785 229 GPYIELVTSP-NNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYTS-------I---TYPADHDLMLFTVSKSTG 289 (456)
Q Consensus 229 ~~~~i~v~~P-~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~~-------~---~~~~~~~i~i~S~SK~~g 289 (456)
+++++++++| |||||.++++ +|++++++||+||+|.+..+.. + ....+++|+++||||+|+
T Consensus 173 ~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 252 (405)
T 3k7y_A 173 NGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMS 252 (405)
T ss_dssp SSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSC
T ss_pred CCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCC
Confidence 4567877665 9999999993 7889999999999998644321 1 133578999999999999
Q ss_pred CCCceEEEEEE--eCHHHHHHHH----HHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 012785 290 HAGTRIGWALV--KDMEVAKKMT----KYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQ 363 (456)
Q Consensus 290 ~~G~RiG~l~~--~~~~~~~~l~----~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 363 (456)
++|+|+||+++ +++++++++. ........+++.+.|.++..+|+.-.-.. ++.++++.+++.++++|+.
T Consensus 253 l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~-----~~~~~l~~~~~~~~~~R~~ 327 (405)
T 3k7y_A 253 LYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKL-----NWIKELSQLSQRITNNRIL 327 (405)
T ss_dssp CTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred CccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 99999999865 3577666554 33333445678899999999887210000 1356778888999999999
Q ss_pred HHHHHH----hcCC---ccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEE
Q 012785 364 LRMAVQ----KSGL---FSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRIS 436 (456)
Q Consensus 364 l~~~L~----~~~~---~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis 436 (456)
+.+.|+ +++. +++..|+||| |+|++++. +.+.++ +++||.+.||. |||
T Consensus 328 l~~~L~~~~~~~g~~~~~~~~~p~gg~-------------f~~~~l~~--~~~~~L-~~~gV~v~p~~---------Ris 382 (405)
T 3k7y_A 328 FFNKLETYQKKYNLNYDWNVYKKQRGL-------------FSFVPLLA--KIAEHL-KTHHIYIINNG---------RIN 382 (405)
T ss_dssp HHHHHHHHGGGGTCCCCGGGGSSCCSS-------------EEECGGGG--GGTTTT-TTTTEECCTTS---------EEE
T ss_pred HHHHHHhhhhhcCCCCCCccccCCceE-------------EEecCCCH--HHHHHH-HHCCEeecCCC---------eEE
Confidence 999999 7753 6778889998 99998863 445444 89999999953 999
Q ss_pred ecC-ChhHHHHHHHHHHhhh
Q 012785 437 MLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 437 ~~~-~~e~i~~~l~~L~~~l 455 (456)
++. +++++++++++|++++
T Consensus 383 ~a~~~~~~i~~~~~~i~~~~ 402 (405)
T 3k7y_A 383 VSGITKNNVDYIADKICLSL 402 (405)
T ss_dssp GGGCCTTHHHHHHHHHHHHH
T ss_pred EeccCHHHHHHHHHHHHHHH
Confidence 986 8899999999999876
No 12
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=100.00 E-value=1.5e-40 Score=336.88 Aligned_cols=323 Identities=11% Similarity=0.080 Sum_probs=251.6
Q ss_pred CeEEecCCCCC---CCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccC
Q 012785 95 RIINVDHGDPT---MYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTG 171 (456)
Q Consensus 95 ~~i~l~~g~p~---~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G 171 (456)
.+|||+.|+|+ ++.++.+.+......+.........|++..| .++||++||+|++. ++++|++|+|
T Consensus 33 ~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G-----~~~lr~~ia~~~~~------~~~~i~~t~G 101 (422)
T 3d6k_A 33 LSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLG-----IADIRELWAEALGL------PADLVVAQDG 101 (422)
T ss_dssp CCEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSC-----CHHHHHHHHHHHTC------CGGGEEECSS
T ss_pred CeEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCC-----CHHHHHHHHHHhCC------ChhHEEEecc
Confidence 47999999998 6665444443221111111112346999888 59999999999953 4579999999
Q ss_pred HHHHH--HHHHHHhcCC------------CCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-----ccccc----C
Q 012785 172 STQLF--QAALYALSSQ------------DASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-----KRFNK----D 228 (456)
Q Consensus 172 ~~~al--~~~~~~l~~~------------gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-----~~l~~----~ 228 (456)
+++++ .++++++..+ +| +|++++|+|+.+...++..|.+++.++.|. +.++. .
T Consensus 102 ~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~----~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~ 177 (422)
T 3d6k_A 102 SSLNIMFDLISWSYTWGNNDSSRPWSAEEKV----KWLCPVPGYDRHFTITEHFGFEMINVPMTDEGPDMGVVRELVKDP 177 (422)
T ss_dssp CHHHHHHHHHHHHHHHCCTTCSSCGGGSSCC----EEEEEESCCHHHHHHHHHHTCEEEEEEEETTEECHHHHHHHHTST
T ss_pred hHHHHHHHHHHHHhcCcccccccccccCCCC----EEEEeCCccHHHHHHHHHcCCEEEecCCCCCCCCHHHHHHHHhcC
Confidence 99997 7777888665 34 799999999999999999999998887643 33332 2
Q ss_pred CCeEEE-EcCCCCCCcccchH--------Hhh-hcCcEEEeeecCCC--CCC-----CCC------CCCCCCcEEEecCc
Q 012785 229 GPYIEL-VTSPNNPDGSVRQS--------VVN-RSGGILVHDLAYYW--PQY-----TSI------TYPADHDLMLFTVS 285 (456)
Q Consensus 229 ~~~~i~-v~~P~NPtG~~~~~--------l~~-~~~~~iI~De~y~~--~~~-----~~~------~~~~~~~i~i~S~S 285 (456)
++++++ +++||||||.+++. +|+ ++|+++|+||+|.+ ... .++ ....+++++++|||
T Consensus 178 ~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 257 (422)
T 3d6k_A 178 QVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTS 257 (422)
T ss_dssp TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEEST
T ss_pred CCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChh
Confidence 568877 78999999999882 677 89999999999974 211 122 12457899999999
Q ss_pred cccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 286 KSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 286 K~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
|. ++||+|+||++++ +++++.+.......+++++.++|.++.++|+.. + .++++++++++.++++++.+.
T Consensus 258 K~-~~~GlriG~~~~~-~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~------~~~~~~~~~~~~~~~~~~~l~ 327 (422)
T 3d6k_A 258 KI-THAGSGVSFFASS-KENIEWYASHANVRGIGPNKLNQLAHAQFFGDV--A------GLKAHMLKHAASLAPKFERVL 327 (422)
T ss_dssp TT-SCTTSSCEEEECC-HHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSH--H------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hh-cCcccceEEEEeC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCc--c------hHHHHHHHHHHHHHHHHHHHH
Confidence 98 6799999999997 999999998887778899999999999988720 1 135788999999999999999
Q ss_pred HHHHhc----CCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeec-CCCCC--C--CCCeEEE
Q 012785 366 MAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRS-GKHFG--F--SPKYVRI 435 (456)
Q Consensus 366 ~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~p-g~~fg--~--~~~~iRi 435 (456)
+.|.+. +.+.+..|.+++ |+|++++. +.+.+.+.++++||.++| |..|+ . .++++||
T Consensus 328 ~~L~~~l~~~~~~~~~~p~~g~-------------~~~~~~~~~~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRi 394 (422)
T 3d6k_A 328 EILDSRLSEYGVAKWTSPTGGY-------------FISVDVVPGTASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRL 394 (422)
T ss_dssp HHHHHHHGGGTCEEECCCSBSS-------------CEEEEESTTCHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEE
T ss_pred HHHHHhcCcCCceEEeCCCcce-------------EEEEECCCCCHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEE
Confidence 888752 334555666666 89999975 466788899999999999 55574 1 3689999
Q ss_pred EecC-ChhHHHHHHHHHHhhh
Q 012785 436 SMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 436 s~~~-~~e~i~~~l~~L~~~l 455 (456)
|++. +++++++++++|++++
T Consensus 395 s~~~~~~e~i~~~~~~l~~~l 415 (422)
T 3d6k_A 395 APSLPPVAELEVAMDGFATCV 415 (422)
T ss_dssp CCSSSCHHHHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHH
Confidence 9984 9999999999999875
No 13
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=100.00 E-value=2.6e-40 Score=328.79 Aligned_cols=326 Identities=18% Similarity=0.227 Sum_probs=265.9
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.++.+|||+.|+|++..++.+.+... ..+..+ ...|++..| .++||++++++++. +|.... +++|++|+
T Consensus 27 ~g~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~---~~~y~~~~~-----~~~l~~~la~~~~~~~g~~~~-~~~v~~~~ 96 (370)
T 2z61_A 27 EGKKVIHLEIGEPDFNTPKPIVDEGI-KSLKEG---KTHYTDSRG-----ILELREKISELYKDKYKADII-PDNIIITG 96 (370)
T ss_dssp TTCCCEECCCCSCSSCCCHHHHHHHH-HHHHTT---CCSCCCTTC-----CHHHHHHHHHHHHHHSSCCCC-GGGEEEES
T ss_pred cCCCEEEccCCCCCCCCCHHHHHHHH-HHHHcC---ccCCCCCCC-----CHHHHHHHHHHHHHHhCCCCC-hhhEEECC
Confidence 46678999999998765554443321 112222 235877777 59999999999975 555554 57999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcccccc---CCCeEEEEcCCCCCCcccch
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNK---DGPYIELVTSPNNPDGSVRQ 247 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~---~~~~~i~v~~P~NPtG~~~~ 247 (456)
|+++++.+++++++++|| +|++++|+|+.+...++..|.+++.+++|.+.++. .+++++++++||||||.+++
T Consensus 97 g~~~a~~~~~~~~~~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~v~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~ 172 (370)
T 2z61_A 97 GSSLGLFFALSSIIDDGD----EVLIQNPCYPCYKNFIRFLGAKPVFCDFTVESLEEALSDKTKAIIINSPSNPLGEVID 172 (370)
T ss_dssp SHHHHHHHHHHHHCCTTC----EEEEESSCCTHHHHHHHHTTCEEEEECSSHHHHHHHCCSSEEEEEEESSCTTTCCCCC
T ss_pred ChHHHHHHHHHHhcCCCC----EEEEeCCCchhHHHHHHHcCCEEEEeCCCHHHHHHhcccCceEEEEcCCCCCcCcccC
Confidence 999999999999999999 99999999999999999999999988888777653 36788999999999999987
Q ss_pred ----HHhhhcCcEEEeeecCCCCCCC----CCCC---CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhc
Q 012785 248 ----SVVNRSGGILVHDLAYYWPQYT----SITY---PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELN 316 (456)
Q Consensus 248 ----~l~~~~~~~iI~De~y~~~~~~----~~~~---~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~ 316 (456)
++|+++|+++|+||+|.+..+. ++.. ..+++++++||||.+|++|+|+||++++ +++++.+.......
T Consensus 173 ~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~~~~~~~~~ 251 (370)
T 2z61_A 173 REIYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISN-DEIIEAILKLQQNL 251 (370)
T ss_dssp HHHHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEEC-HHHHHHHHHHHhhc
Confidence 4889999999999999864331 2221 3478999999999999999999999997 89999998887777
Q ss_pred cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCc
Q 012785 317 TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPA 396 (456)
Q Consensus 317 ~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 396 (456)
+++++++.|.++.++|+.+ + ++++++.++.++++++.+.+.|+++ ++.+..+.+++
T Consensus 252 ~~~~~~~~~~a~~~~l~~~--~--------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~------------- 307 (370)
T 2z61_A 252 FISAPTISQYAALKAFEKE--T--------EREINSMIKEFDRRRRLVLKYVKDF-GWEVNNPIGAY------------- 307 (370)
T ss_dssp TSSSCHHHHHHHGGGGSHH--H--------HHHHHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCBTT-------------
T ss_pred ccCCCHHHHHHHHHHHhcc--C--------HHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCcce-------------
Confidence 7899999999988888621 1 5678889999999999999999987 46666666666
Q ss_pred eEEeecCccHHHHHHHHH-hCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 397 FAWLKCEQEIEDCESFLK-GNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 397 f~~~~~~~~~~~~~~~l~-~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+|++++.+.+.+.+.|. ++||.++||..|+. .++++||+++.+++++++++++|+++++
T Consensus 308 ~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 308 YVFPNIGEDGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYANSYENIKEGLERIKEFLN 369 (370)
T ss_dssp EECCBCSSCHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred EEEEecCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 889888645556666665 89999999999974 4789999998899999999999998864
No 14
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=100.00 E-value=1.8e-40 Score=335.77 Aligned_cols=334 Identities=16% Similarity=0.232 Sum_probs=265.3
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.+.++|+|+.|+|++++++.+.+... ..+..+. ....|++..| .+++|++++++++. +|....++++|++|+
T Consensus 26 ~~~~~i~l~~g~~~~~~~~~v~~a~~-~~~~~~~-~~~~y~~~~g-----~~~lr~~la~~~~~~~g~~~~~~~~i~~~~ 98 (422)
T 3fvs_A 26 SEHDVVNLGQGFPDFPPPDFAVEAFQ-HAVSGDF-MLNQYTKTFG-----YPPLTKILASFFGELLGQEIDPLRNVLVTV 98 (422)
T ss_dssp HTSCCEECCCSSCSSCCCHHHHHHHH-HHHHSCG-GGGSCCCTTC-----CHHHHHHHHHHHHHHHTCCCCHHHHEEEES
T ss_pred hcCCceEeCCCCCCCCCCHHHHHHHH-HHHhCCC-ccCCCCCCCC-----CHHHHHHHHHHHHHhhCCCCCCCCcEEEEC
Confidence 34578999999999887776655322 2222222 2346888778 59999999999964 666554326999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc------------------ccccc---CC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA------------------KRFNK---DG 229 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~------------------~~l~~---~~ 229 (456)
|+++++++++++++.+|| +|+++.|+|+.+...++..|.+++.++.+. +.++. .+
T Consensus 99 g~~~a~~~~~~~~~~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~ 174 (422)
T 3fvs_A 99 GGYGALFTAFQALVDEGD----EVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSR 174 (422)
T ss_dssp HHHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTT
T ss_pred ChHHHHHHHHHHHcCCCC----EEEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCCC
Confidence 999999999999999999 999999999999999999999988776543 33332 25
Q ss_pred CeEEEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCC-----CCCC---CCCCCcEEEecCccccCCCCc
Q 012785 230 PYIELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQY-----TSIT---YPADHDLMLFTVSKSTGHAGT 293 (456)
Q Consensus 230 ~~~i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~-----~~~~---~~~~~~i~i~S~SK~~g~~G~ 293 (456)
++++++++||||||.+++ ++|+++|+++|+||+|.+..+ .++. ...+++++++||||.+|++|+
T Consensus 175 ~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~ 254 (422)
T 3fvs_A 175 TKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGW 254 (422)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGG
T ss_pred ceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccc
Confidence 789999999999999986 278999999999999986322 1221 234678999999999999999
Q ss_pred eEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012785 294 RIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGL 373 (456)
Q Consensus 294 RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~ 373 (456)
|+||++++ +++++.+.......+++++++.|.++.++|+....... ..++++++.++.++++++.+.+.|++++
T Consensus 255 r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~L~~~g- 328 (422)
T 3fvs_A 255 KVGWVLGP-DHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFR----QPSSYFVQFPQAMQRCRDHMIRSLQSVG- 328 (422)
T ss_dssp CCEEEECC-HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTT----CTTCHHHHHHHHHHHHHHHHHHHHHTTT-
T ss_pred eEEEEEeC-HHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhcccccc----chHHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 99999997 89999998887777889999999999999873110000 1257889999999999999999999874
Q ss_pred ccccCCCCcccccccccCCCCCceEEeecCc----------------cHHHHHHHHHhCCEEeecCCCCCC------CCC
Q 012785 374 FSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----------------EIEDCESFLKGNKILTRSGKHFGF------SPK 431 (456)
Q Consensus 374 ~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----------------~~~~~~~~l~~~gI~v~pg~~fg~------~~~ 431 (456)
+.+..|.+++ |+|++++. ..+.+..+++++||.+.||+.|+. ..+
T Consensus 329 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~ 395 (422)
T 3fvs_A 329 LKPIIPQGSY-------------FLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDH 395 (422)
T ss_dssp CEEEBCSBSS-------------EEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCS
T ss_pred CeecCCCeee-------------EEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCC
Confidence 6666677776 89998753 124455567789999999999963 478
Q ss_pred eEEEEecCChhHHHHHHHHHHhhh
Q 012785 432 YVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 432 ~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
++||+++.+++++++++++|++++
T Consensus 396 ~iRis~~~~~e~i~~~l~~l~~~l 419 (422)
T 3fvs_A 396 YIRFCFVKDEATLQAMDEKLRKWK 419 (422)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHH
T ss_pred eEEEEecCCHHHHHHHHHHHHHHH
Confidence 999999889999999999999876
No 15
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=2.9e-40 Score=329.21 Aligned_cols=327 Identities=18% Similarity=0.202 Sum_probs=261.5
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEc
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVG 169 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t 169 (456)
..++.+|||+.|+|++..++.+.+... ..+... ....|++..| ..+||+++++++.. +|....+.++|++|
T Consensus 22 ~~g~~~idl~~~~~~~~~~~~v~~a~~-~~~~~~--~~~~y~~~~~-----~~~l~~~ia~~~~~~~g~~~~~~~~v~~~ 93 (376)
T 2dou_A 22 ERGVGLIDLSIGSTDLPPPEAPLKALA-EALNDP--TTYGYCLKSC-----TLPFLEEAARWYEGRYGVGLDPRREALAL 93 (376)
T ss_dssp HTTCCCEECSSCCCCCCCCHHHHHHHH-HHTTCG--GGSSCCCHHH-----HHHHHHHHHHHHHHHHSCCCCTTTSEEEE
T ss_pred ccCCCEEeccCCCCCCCCCHHHHHHHH-HHHhCC--CcCCCCCCCC-----CHHHHHHHHHHHHHHhCCCCCCCccEEEc
Confidence 346678999999998766655554322 112211 1345777556 48999999999954 46655433389999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc------Ccccccc---CCCeEEEEcCCCC
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG------DAKRFNK---DGPYIELVTSPNN 240 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~------d~~~l~~---~~~~~i~v~~P~N 240 (456)
+|++++++++++++.++|| +|++++|+|+.+...++..|.+++.++. |.+.++. .+++++++++|||
T Consensus 94 ~g~~~a~~~~~~~l~~~gd----~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~n 169 (376)
T 2dou_A 94 IGSQEGLAHLLLALTEPED----LLLLPEVAYPSYFGAARVASLRTFLIPLREDGLADLKAVPEGVWREAKVLLLNYPNN 169 (376)
T ss_dssp SSHHHHHHHHHHHHCCTTC----EEEEESSCCHHHHHHHHHTTCEEEEECBCTTSSBCGGGSCHHHHHHEEEEEECSSCT
T ss_pred CCcHHHHHHHHHHhcCCCC----EEEECCCCcHhHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHhhccCceEEEECCCCC
Confidence 9999999999999999999 9999999999999999999999887764 4444443 2578999999999
Q ss_pred CCcccch--------HHhhhcCcEEEeeecCCCCCCC----CCC---CCCCCcEEEecCccccCCCCceEEEEEEeCHHH
Q 012785 241 PDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT----SIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEV 305 (456)
Q Consensus 241 PtG~~~~--------~l~~~~~~~iI~De~y~~~~~~----~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~ 305 (456)
|||.+++ ++|+++|+++|+||+|.+..+. +.. ...+++++++||||.+|++|+|+||++++ +++
T Consensus 170 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~ 248 (376)
T 2dou_A 170 PTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGS-EEA 248 (376)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEEC-HHH
T ss_pred CcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecC-HHH
Confidence 9999987 2788999999999999863221 111 22467899999999999999999999996 999
Q ss_pred HHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccc
Q 012785 306 AKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCT 385 (456)
Q Consensus 306 ~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~ 385 (456)
++.+.......+++++++.|.++.++|+ +. ++++++.++.++++++.+.+.|+++ +.+..+.+++
T Consensus 249 ~~~l~~~~~~~~~~~~~~~~~a~~~~l~---~~--------~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~-- 313 (376)
T 2dou_A 249 LARLERVKGVIDFNQYAGVLRMGVEALK---TP--------KEVVRGYARVYRERALGMAEALKGV--LSLLPPRATM-- 313 (376)
T ss_dssp HHHHHHHHHHHCCCSCHHHHHHHHHHHT---SC--------HHHHHHHHHHHHHHHHHHHHHHTTT--SEECCCCBSS--
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHh---Cc--------HHHHHHHHHHHHHHHHHHHHHHHHh--cCccCCCeeE--
Confidence 9999988777778899999999999887 32 5788999999999999999999886 5555566666
Q ss_pred cccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 386 FLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 386 ~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+|++++. +...+.+.|.++||.++||..|+. .++++||+++.+++++++++++|+++++
T Consensus 314 -----------~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~i~~~l~~l~~~l~ 376 (376)
T 2dou_A 314 -----------YLWGRLPEGVDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALVRPLEELLEAAKRIREALD 376 (376)
T ss_dssp -----------EEEEECCTTCCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHTC-
T ss_pred -----------EEEEECCCCCCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHhC
Confidence 89999863 356677777778999999999974 4689999998889999999999998864
No 16
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=100.00 E-value=1.2e-39 Score=330.81 Aligned_cols=327 Identities=15% Similarity=0.185 Sum_probs=259.3
Q ss_pred cCCCCeEEecCCCCC----CCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceE
Q 012785 91 DGGERIINVDHGDPT----MYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHI 166 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~----~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I 166 (456)
..++++|+|+.|+|+ +++++.+.++.. ..+.... ...|++..| .++||++++++++..+.... +++|
T Consensus 51 ~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~-~~~~~~~--~~~y~~~~g-----~~~lr~~la~~~~~~~~~~~-~~~v 121 (427)
T 3dyd_A 51 NPNKTMISLSIGDPTVFGNLPTDPEVTQAMK-DALDSGK--YNGYAPSIG-----FLSSREEIASYYHCPEAPLE-AKDV 121 (427)
T ss_dssp CTTSCCEECCCSCTTTTSSSCCCHHHHHHHH-HHHHHCC--SSSCCCTTC-----CHHHHHHHHHHHCBTTBCCC-GGGE
T ss_pred cCCCCEEeCCCcCCCccCCCCCCHHHHHHHH-HHHhcCc--CCCCCCCCC-----cHHHHHHHHHHHhhcCCCCC-hHHE
Confidence 345678999999986 355555544322 2222221 236877778 59999999999975555544 5799
Q ss_pred EEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc--------Ccccccc---CCCeEEEE
Q 012785 167 VVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG--------DAKRFNK---DGPYIELV 235 (456)
Q Consensus 167 ~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~--------d~~~l~~---~~~~~i~v 235 (456)
++|+|+++++++++.++.++|| +|+++.|+|+++...++..|.+++.++. |.+.++. .+++++++
T Consensus 122 ~~t~g~t~al~~~~~~l~~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i 197 (427)
T 3dyd_A 122 ILTSGCSQAIDLCLAVLANPGQ----NILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIV 197 (427)
T ss_dssp EEESSHHHHHHHHHHHHCCTTC----EEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCTTEEEEEE
T ss_pred EEecCcHHHHHHHHHHhcCCCC----EEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCEEEE
Confidence 9999999999999999999999 9999999999999999999999887654 4444443 25788999
Q ss_pred cCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCC-----CCC--CCCCCcEEEecCccccCCCCceEEEEEE
Q 012785 236 TSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT-----SIT--YPADHDLMLFTVSKSTGHAGTRIGWALV 300 (456)
Q Consensus 236 ~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~-----~~~--~~~~~~i~i~S~SK~~g~~G~RiG~l~~ 300 (456)
++||||||.+++ ++|+++|+++|+||+|.+..+. ++. ....++++++||||.|+++|+|+||+++
T Consensus 198 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~riG~~~~ 277 (427)
T 3dyd_A 198 NNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILI 277 (427)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCCEEEEE
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCcceEEEEe
Confidence 999999999988 2789999999999999863221 221 2234579999999999999999999999
Q ss_pred eC------HHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 012785 301 KD------MEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLF 374 (456)
Q Consensus 301 ~~------~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~ 374 (456)
++ +++++.+...... +++++++.|.++.++|+. . ..+++++.+++++++++.+.+.|++++++
T Consensus 278 ~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~a~~~~L~~---~-------~~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 346 (427)
T 3dyd_A 278 HDRRDIFGNEIRDGLVKLSQR-ILGPCTIVQGALKSILCR---T-------PGEFYHNTLSFLKSNADLCYGALAAIPGL 346 (427)
T ss_dssp ECSTTSSHHHHHHHHHHHHHH-HCCSCHHHHHHHHHHHHH---S-------CHHHHHHHHHHHHHHHHHHHHHHHHSTTE
T ss_pred cCcchhhHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHh---c-------CHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 75 4688788776543 688999999999999983 1 15788899999999999999999998667
Q ss_pred cccCCCCcccccccccCCCCCceEEeecC-------ccHHHHH-HHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHH
Q 012785 375 SVPELPSQFCTFLGRAFEPQPAFAWLKCE-------QEIEDCE-SFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNL 446 (456)
Q Consensus 375 ~~~~~~g~~~~~~~~~~~~~~~f~~~~~~-------~~~~~~~-~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~ 446 (456)
.+..|.+++ |+|++++ .+...+. .+++++||.+.||..|+. ++++||+++.+++++++
T Consensus 347 ~~~~p~~g~-------------~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~-~~~iRis~~~~~e~i~~ 412 (427)
T 3dyd_A 347 RPVRPSGAM-------------YLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEY-PNFIRVVITVPEVMMLE 412 (427)
T ss_dssp EEECCSBTT-------------EEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTC-TTEEEEESCSCHHHHHH
T ss_pred eecCCCeeE-------------EEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCC-CCeEEEEECCCHHHHHH
Confidence 777777776 8998875 2334444 455689999999999975 78999999889999999
Q ss_pred HHHHHHhhh
Q 012785 447 FVQRLSKIL 455 (456)
Q Consensus 447 ~l~~L~~~l 455 (456)
++++|++++
T Consensus 413 ~l~~l~~~l 421 (427)
T 3dyd_A 413 ACSRIQEFC 421 (427)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999876
No 17
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=100.00 E-value=1.4e-39 Score=327.84 Aligned_cols=327 Identities=20% Similarity=0.282 Sum_probs=261.2
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.++.+|||+.|+|++..++.+.+... ..+... ....|++..| .++||+++++++.. +|....+.++|++|+
T Consensus 45 ~g~~~idl~~g~~~~~~~~~v~~a~~-~~~~~~--~~~~y~~~~g-----~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~ 116 (404)
T 2o1b_A 45 GPLPLINMAVGIPDGPTPQGIIDHFQ-KALTIP--ENQKYGAFHG-----KEAFKQAIVDFYQRQYNVTLDKEDEVCILY 116 (404)
T ss_dssp CSSCCEECCCCSCSSCCCHHHHHHHH-HHTTCH--HHHSCCCTTC-----CHHHHHHHHHHHHHHHCCCCCTTTSEEEES
T ss_pred CCCCEEecCCcCCCCCCCHHHHHHHH-HHHhCC--CCCCCCCCCC-----CHHHHHHHHHHHHHHhCCCCCCcccEEEcC
Confidence 34568999999998776655554322 112111 1345887667 59999999999954 466554336899999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-------ccccc---CCCeEEEEcCCCC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-------KRFNK---DGPYIELVTSPNN 240 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-------~~l~~---~~~~~i~v~~P~N 240 (456)
|+++++++++++++++|| +|+++.|+|+.+...++..|.+++.++.+. +.++. .+++++++++|||
T Consensus 117 G~~~al~~~~~~l~~~gd----~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~n 192 (404)
T 2o1b_A 117 GTKNGLVAVPTCVINPGD----YVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNN 192 (404)
T ss_dssp SHHHHHHHHHHHHCCTTC----EEEEEESCCSSHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHHEEEEEECSSCT
T ss_pred CcHHHHHHHHHHhcCCCC----EEEEcCCCchhHHHHHHHCCCEEEEeccCcccCcCCHHHHHHhhccCceEEEEcCCCC
Confidence 999999999999999999 999999999999999999999988776543 33432 2568999999999
Q ss_pred CCcccch--------HHhhhcCcEEEeeecCCCCCCC----CCCCC---CCCcEEEecCccccCCCCceEEEEEEeCHHH
Q 012785 241 PDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT----SITYP---ADHDLMLFTVSKSTGHAGTRIGWALVKDMEV 305 (456)
Q Consensus 241 PtG~~~~--------~l~~~~~~~iI~De~y~~~~~~----~~~~~---~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~ 305 (456)
|||.+++ ++|+++|+++|+||+|.+..+. ++... .+++++++||||.+|++|+|+||++++ +++
T Consensus 193 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~ 271 (404)
T 2o1b_A 193 PTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGN-KDM 271 (404)
T ss_dssp TTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEEC-HHH
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeEecC-HHH
Confidence 9999986 2788999999999999864332 22222 256899999999999999999999996 999
Q ss_pred HHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccc
Q 012785 306 AKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCT 385 (456)
Q Consensus 306 ~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~ 385 (456)
++.+.......+++++.+.|.++.++|+. + ++++++.++.++++++.+.+.|++.+ +.+..+.+++
T Consensus 272 ~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~--------~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~-- 337 (404)
T 2o1b_A 272 IQALKKYQTHTNAGMFGALQDAAIYALNH---Y--------DDFLEEQSNVFKTRRDRFEAMLAKAD-LPFVHAKGGI-- 337 (404)
T ss_dssp HHHHHHHHHHHCCCCCHHHHHHHHHHHHH---C--------HHHHHHHHHHHHHHHHHHHHHHHHTT-CCEECCCBSS--
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHhc---C--------HHHHHHHHHHHHHHHHHHHHHHHhcC-CeecCCCcce--
Confidence 99998887777789999999999999872 2 57889999999999999999999874 6666666666
Q ss_pred cccccCCCCCceEEeecCc--cHHHHHHHH-HhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 386 FLGRAFEPQPAFAWLKCEQ--EIEDCESFL-KGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 386 ~~~~~~~~~~~f~~~~~~~--~~~~~~~~l-~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+|++++. +...+.+.| +++||.++||..|+. .++++||+++.+++++++++++|+++++
T Consensus 338 -----------~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~~l~~~l~ 401 (404)
T 2o1b_A 338 -----------YVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTELAY 401 (404)
T ss_dssp -----------EEEEECCTTCCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCSCTTHHHHHHHHHHGGGG
T ss_pred -----------EEEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 89999863 345555554 578999999999974 4789999998888999999999998863
No 18
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=100.00 E-value=1.7e-39 Score=321.63 Aligned_cols=305 Identities=17% Similarity=0.179 Sum_probs=244.4
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
+.+|||+.|++++++++.+ ++ . ....|++.. .++||+++|++++. ++++|++|+|++
T Consensus 29 ~~~i~l~~~~~~~~~~~~v-------a~-~---~~~~Y~~~~------~~~lr~~la~~~~~------~~~~v~~~~G~~ 85 (356)
T 1fg7_A 29 NGDVWLNANEYPTAVEFQL-------TQ-Q---TLNRYPECQ------PKAVIENYAQYAGV------KPEQVLVSRGAD 85 (356)
T ss_dssp TCSEECSSCCCSSCCCCCC-------CC-C---CTTSCCCSS------CHHHHHHHHHHHTS------CGGGEEEESHHH
T ss_pred CceEEeeCCCCCCCCCHhH-------hh-h---hhccCCCcc------HHHHHHHHHHHhCC------ChHHEEEcCCHH
Confidence 3679999999988876543 11 1 234688764 49999999999953 457999999999
Q ss_pred HHHHHHHHHhcCCC-CCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc------CccccccC--CCeEEEEcCCCCCCcc
Q 012785 174 QLFQAALYALSSQD-ASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG------DAKRFNKD--GPYIELVTSPNNPDGS 244 (456)
Q Consensus 174 ~al~~~~~~l~~~g-d~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~------d~~~l~~~--~~~~i~v~~P~NPtG~ 244 (456)
+++++++++++++| | +|+++.|+|+.+...++..|.+++.++. |.+.++.. +++++++++||||||.
T Consensus 86 ~ai~~~~~~~~~~g~d----~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~v~l~~p~nptG~ 161 (356)
T 1fg7_A 86 EGIELLIRAFCEPGKD----AILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLDLQGISDKLDGVKVVYVCSPNNPTGQ 161 (356)
T ss_dssp HHHHHHHHHHCCTTTC----EEEECSSSCTHHHHHHHHHTCEEEECCCCTTSCCCHHHHHTSCTTEEEEEEESSCTTTCC
T ss_pred HHHHHHHHHHhCCCCC----EEEEeCCChHHHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHHhcCCCEEEEeCCCCCCCC
Confidence 99999999999999 9 9999999999999999999999887765 33444332 6789999999999999
Q ss_pred cchH--------HhhhcCcEEEeeecCCCCC----CCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHH
Q 012785 245 VRQS--------VVNRSGGILVHDLAYYWPQ----YTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKY 312 (456)
Q Consensus 245 ~~~~--------l~~~~~~~iI~De~y~~~~----~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~ 312 (456)
+++. +|+ +|+++|+||+|.+.. ...+....+++++++||||.+|++|+|+||++++ +++++.+...
T Consensus 162 ~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~l~~~ 239 (356)
T 1fg7_A 162 LINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLAN-EEVINLLMKV 239 (356)
T ss_dssp CCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEEC-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeC-HHHHHHHHHh
Confidence 9872 455 899999999998633 1122233578999999999999999999999996 9999998877
Q ss_pred HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCC
Q 012785 313 IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFE 392 (456)
Q Consensus 313 ~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~ 392 (456)
.. ++++++++|.++.++|+. . ..+++++.++.++++++.+.+.|++++.+....+.
T Consensus 240 ~~--~~~~~~~~~~a~~~~l~~---~-------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~------------ 295 (356)
T 1fg7_A 240 IA--PYPLSTPVADIAAQALSP---Q-------GIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDS------------ 295 (356)
T ss_dssp SC--SSCSCHHHHHHHHHHTSH---H-------HHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCC------------
T ss_pred cC--CCCCCHHHHHHHHHHhcC---c-------cHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCC------------
Confidence 54 568999999999998872 1 01248889999999999999999987632222233
Q ss_pred CCCceEEeecCccHHHHHHHHHhCCEEeec-CCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 393 PQPAFAWLKCEQEIEDCESFLKGNKILTRS-GKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 393 ~~~~f~~~~~~~~~~~~~~~l~~~gI~v~p-g~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
.++|+|++++ +.+.+.+.|+++||.++| |..|+. ++++||+++ +++++++++++|++++
T Consensus 296 -~~~~~~~~~~-~~~~l~~~L~~~gI~v~~~g~~~~~-~~~iRis~~-~~~e~~~~~~~l~~~~ 355 (356)
T 1fg7_A 296 -ETNYILARFK-ASSAVFKSLWDQGIILRDQNKQPSL-SGCLRITVG-TREESQRVIDALRAEQ 355 (356)
T ss_dssp -SSSEEEEEET-THHHHHHHHHHTTEECEECTTSTTC-TTEEEEECC-CHHHHHHHHHHHHTCC
T ss_pred -CCeEEEEECC-CHHHHHHHHHHCCEEEEECCCCCCC-CCeEEEEeC-CHHHHHHHHHHHHhhc
Confidence 3348999997 566677778999999999 888875 579999995 6889999999998764
No 19
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=100.00 E-value=6.7e-40 Score=334.48 Aligned_cols=328 Identities=19% Similarity=0.212 Sum_probs=258.9
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccC--ccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPG--WQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~--~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
..++.+|||++|+|+++.++.+.+..... +..- ......|++..| .++||+++++++. +|.... +++|++
T Consensus 66 ~~~~~~i~l~~g~~~~~~~~~v~~a~~~~-~~~~~~~~~~~~y~~~~g-----~~~lr~~ia~~~~-~g~~~~-~~~i~~ 137 (449)
T 3qgu_A 66 NPDAKIISLGIGDTTEPLPKYIADAMAKA-AAGLATREGYSGYGAEQG-----QGALREAVASTFY-GHAGRA-ADEIFI 137 (449)
T ss_dssp CTTCCCEECSSCCCCCCCCHHHHHHHHHH-HHGGGGSCCCCCSTTTTC-----CHHHHHHHHHHHH-TTTTCC-GGGEEE
T ss_pred CCCCCEEEeeCCCCCCCCCHHHHHHHHHH-HHhhccccCCCCCCCCCC-----cHHHHHHHHHHHH-cCCCCC-HHHEEE
Confidence 34678999999999998877666543221 2210 012346887777 5999999999997 666654 579999
Q ss_pred ccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCe----------EeeeccCcc-ccc----c-CCCeE
Q 012785 169 GTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSR----------LYKWAGDAK-RFN----K-DGPYI 232 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~----------~~~~~~d~~-~l~----~-~~~~~ 232 (456)
|+|+++++.++ ..++.+|| +|++++|+|+.+...++..|.+ ++.++.|.+ ++. . .++++
T Consensus 138 t~G~~~al~~~-~~l~~~gd----~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (449)
T 3qgu_A 138 SDGSKCDIARI-QMMFGSKP----TVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKAKRTDI 212 (449)
T ss_dssp ESCHHHHHHHH-HHHHCSSS----CEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGCCCCSE
T ss_pred ccCHHHHHHHH-HHHhCCCC----EEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHcCCCCE
Confidence 99999999998 88889999 9999999999999999999998 888877654 332 2 36789
Q ss_pred EEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCC-----CCC---CCCCCcEEEecCccccCCCCceEE
Q 012785 233 ELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYT-----SIT---YPADHDLMLFTVSKSTGHAGTRIG 296 (456)
Q Consensus 233 i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~-----~~~---~~~~~~i~i~S~SK~~g~~G~RiG 296 (456)
|++++||||||.+++. +|+++|+++|+||+|.+..+. ++. ...+++++++||||.+|++|+|+|
T Consensus 213 v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G 292 (449)
T 3qgu_A 213 IFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLG 292 (449)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCE
T ss_pred EEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccceeE
Confidence 9999999999999872 688999999999999863221 221 224678999999999999999999
Q ss_pred EEEEeCHHHHH--------HHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 012785 297 WALVKDMEVAK--------KMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAV 368 (456)
Q Consensus 297 ~l~~~~~~~~~--------~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L 368 (456)
|++++ +++++ .+.........+++++.|.++.++|.. . ..++++++++.++++++.+.+.|
T Consensus 293 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~-------~~~~~~~~~~~~~~~~~~l~~~L 361 (449)
T 3qgu_A 293 WTVVP-KALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQP---E-------GLKEMNAMIKFYKENAQILKTTF 361 (449)
T ss_dssp EEECC-TTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSH---H-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecC-HHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhh---c-------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997 66654 455555556678999999999998872 1 14678899999999999999999
Q ss_pred HhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHH-HHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHH
Q 012785 369 QKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCE-SFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYN 445 (456)
Q Consensus 369 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~-~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~ 445 (456)
++.+ +.+..+.+++ |+|++++. +...+. .+++++||.++||..|+. ++++|||++..++++++
T Consensus 362 ~~~g-~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~~~e~i~ 427 (449)
T 3qgu_A 362 TEMG-FSVYGGDDAP-------------YIWVGFPGKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFGSRENIL 427 (449)
T ss_dssp HHTT-CCEEESSSSS-------------EEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHH
T ss_pred HHCC-CeeeCCCCee-------------EEEEECCCCCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecCCHHHHH
Confidence 9874 6666666666 89999863 344444 555567999999999974 57899999877999999
Q ss_pred HHHHHHHhhhC
Q 012785 446 LFVQRLSKILS 456 (456)
Q Consensus 446 ~~l~~L~~~l~ 456 (456)
+++++|+++++
T Consensus 428 ~~l~~l~~~~~ 438 (449)
T 3qgu_A 428 EAVRRFKEAYG 438 (449)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999998864
No 20
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=100.00 E-value=2.6e-39 Score=326.45 Aligned_cols=327 Identities=19% Similarity=0.235 Sum_probs=257.3
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEc
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVG 169 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t 169 (456)
..+..+|||+.|+|++..++.+.+... ..+... ....|++..| ..+|++++++++.. +|....++++|++|
T Consensus 34 ~~g~~~idl~~g~~~~~~~~~v~~a~~-~~~~~~--~~~~y~~~~g-----~~~l~~~ia~~~~~~~g~~~~~~~~v~~t 105 (412)
T 2x5d_A 34 RRGEDIIDLSMGNPDGPTPPHIVEKLC-TVAQRE--DTHGYSTSRG-----IPRLRRAISHWYRDRYDVQIDPESEAIVT 105 (412)
T ss_dssp HTTCCCEECSSCCCCSCCCHHHHHHHH-HTC-----------CTTC-----CHHHHHHHHHHHHHHHCCCCCTTTSEEEE
T ss_pred hcCCCEEecCCCCCCCCCCHHHHHHHH-HHHhCC--CCCCCCCCCC-----cHHHHHHHHHHHHHHhCCCCCCCcCEEEc
Confidence 356788999999998766655554322 112211 1235876677 59999999999954 46554422699999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc--------cccc---CCCeEEEEcCC
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK--------RFNK---DGPYIELVTSP 238 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~--------~l~~---~~~~~i~v~~P 238 (456)
+|+++++.+++++++.+|| +|++++|+|+.+...++..|.+++.++.+.+ .++. .+++++++++|
T Consensus 106 ~g~~~a~~~~~~~~~~~gd----~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~~p 181 (412)
T 2x5d_A 106 IGSKEGLAHLMLATLDHGD----TILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGFP 181 (412)
T ss_dssp SCHHHHHHHHHHHHCCTTC----EEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEESS
T ss_pred CChHHHHHHHHHHhCCCCC----EEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhcccCceEEEECCC
Confidence 9999999999999999999 9999999999999999999999988776543 2322 36789999999
Q ss_pred CCCCcccch--------HHhhhcCcEEEeeecCCCCCC-----CCCCCC---CCCcEEEecCccccCCCCceEEEEEEeC
Q 012785 239 NNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQY-----TSITYP---ADHDLMLFTVSKSTGHAGTRIGWALVKD 302 (456)
Q Consensus 239 ~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~-----~~~~~~---~~~~i~i~S~SK~~g~~G~RiG~l~~~~ 302 (456)
|||||.+++ ++|+++|+++|+||+|.+..+ .++... .+++++++||||.+|++|+|+||++++
T Consensus 182 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~- 260 (412)
T 2x5d_A 182 SNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGN- 260 (412)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEEC-
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEEcC-
Confidence 999999987 278899999999999986432 122221 467999999999999999999999996
Q ss_pred HHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCc
Q 012785 303 MEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQ 382 (456)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~ 382 (456)
+++++.+.......+++++++.|.++.++|+ .. ++++++.++.++++++.+.+.|+++ ++.+..+.++
T Consensus 261 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~---~~--------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g 328 (412)
T 2x5d_A 261 PELVSALARIKSYHDYGTFTPLQVAAIAALE---GD--------QQCVRDIARQYQQRRDVLVKGLREA-GWMVENPKAS 328 (412)
T ss_dssp HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH---SC--------SHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCCSBS
T ss_pred HHHHHHHHHHHhhhccCCCHHHHHHHHHHHh---CC--------HHHHHHHHHHHHHHHHHHHHHHHHC-CCEecCCCee
Confidence 9999999988777788999999999999887 33 4678999999999999999999987 4666666666
Q ss_pred ccccccccCCCCCceEEeecCc-----cHHHHHHHH-HhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 383 FCTFLGRAFEPQPAFAWLKCEQ-----EIEDCESFL-KGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 383 ~~~~~~~~~~~~~~f~~~~~~~-----~~~~~~~~l-~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
+ |+|++++. +...+.+.| +++||.++||..|+. .++++||+++.+++++++++++|++++
T Consensus 329 ~-------------~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~l 395 (412)
T 2x5d_A 329 M-------------YVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIKAMF 395 (412)
T ss_dssp S-------------EEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred e-------------EEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 6 89999853 345566655 568999999999964 478999999889999999999999875
No 21
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=100.00 E-value=3.4e-40 Score=328.46 Aligned_cols=325 Identities=13% Similarity=0.129 Sum_probs=264.9
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHH-HhcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~I~~t~ 170 (456)
.++++|||+.|+++++.++.+.++.. ..+..+ ...|++ .| .++|++++++++ .+|.... +++|++|+
T Consensus 21 ~g~~~idl~~~~~~~~~~~~v~~a~~-~~~~~~---~~~y~~-~~------~~lr~~la~~~~~~~~~~~~-~~~i~~t~ 88 (377)
T 3fdb_A 21 YGQGVLPLWVAESDFSTCPAVLQAIT-DAVQRE---AFGYQP-DG------SLLSQATAEFYADRYGYQAR-PEWIFPIP 88 (377)
T ss_dssp SCTTSEECCSSCCCSCCCHHHHHHHH-HHHHTT---CCSSCC-SS------CCHHHHHHHHHHHHHCCCCC-GGGEEEES
T ss_pred cCCCeeeecccCCCCCCCHHHHHHHH-HHHHcC---CCCCCC-CC------HHHHHHHHHHHHHHhCCCCC-HHHEEEeC
Confidence 46789999999999887766654322 122222 235777 65 799999999996 4565554 57999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC----cccccc---CCCeEEEEcCCCCCCc
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD----AKRFNK---DGPYIELVTSPNNPDG 243 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d----~~~l~~---~~~~~i~v~~P~NPtG 243 (456)
|++++++++++++.++|| +|+++.|+|+.+...++..|.+++.++.+ .+.++. .+++++++++||||||
T Consensus 89 g~~~a~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG 164 (377)
T 3fdb_A 89 DVVRGLYIAIDHFTPAQS----KVIVPTPAYPPFFHLLSATQREGIFIDATGGINLHDVEKGFQAGARSILLCNPYNPLG 164 (377)
T ss_dssp CHHHHHHHHHHHHSCTTC----CEEEEESCCTHHHHHHHHHTCCEEEEECTTSCCHHHHHHHHHTTCCEEEEESSBTTTT
T ss_pred ChHHHHHHHHHHhcCCCC----EEEEcCCCcHhHHHHHHHcCCEEEEccCCCCCCHHHHHHHhccCCCEEEEeCCCCCCC
Confidence 999999999999999999 99999999999999999999999988764 444433 3578999999999999
Q ss_pred ccchH--------HhhhcCcEEEeeecCCCCCCC------CCCC--CCCCcEEEecCccccCCCCceEEEEEEeCHHHHH
Q 012785 244 SVRQS--------VVNRSGGILVHDLAYYWPQYT------SITY--PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAK 307 (456)
Q Consensus 244 ~~~~~--------l~~~~~~~iI~De~y~~~~~~------~~~~--~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~ 307 (456)
.+++. +|+++|+++|+||+|.+..+. ++.. ..+++++++||||.+|++|+|+||++++++++++
T Consensus 165 ~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~ 244 (377)
T 3fdb_A 165 MVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAE 244 (377)
T ss_dssp BCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEEEeCCHHHHH
Confidence 99872 688999999999999863222 2221 1457899999999999999999999986689999
Q ss_pred HHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh-cCCccccCCCCccccc
Q 012785 308 KMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK-SGLFSVPELPSQFCTF 386 (456)
Q Consensus 308 ~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~g~~~~~ 386 (456)
.+.......+++++++.|.++.++|+ +. ++++++.++.++++++.+.+.|++ ++++.+..+.+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~a~~~~l~---~~--------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~--- 310 (377)
T 3fdb_A 245 HWQQLSPVIKDGASTLGLIAAEAAYR---YG--------TDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQATY--- 310 (377)
T ss_dssp HHHHSCHHHHCCCCHHHHHHHHHHHH---HC--------HHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSBCS---
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHh---cc--------HHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCeeE---
Confidence 99888776788999999999999888 22 578899999999999999999998 6667777777776
Q ss_pred ccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 387 LGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 387 ~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
++|++++. +.+.+..+++++||.++||+.|+. .++++||+++.+++++++++++|+++++
T Consensus 311 ----------~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~~~e~i~~~l~~l~~~l~ 374 (377)
T 3fdb_A 311 ----------LMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFATSREVLEEAIDRMAKAVS 374 (377)
T ss_dssp ----------EEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred ----------EEEEECcccCCCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 78998864 234455556667999999999975 5789999998899999999999998864
No 22
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=100.00 E-value=1.5e-39 Score=329.79 Aligned_cols=325 Identities=14% Similarity=0.108 Sum_probs=255.3
Q ss_pred CCCeEEecCCCCCCCchhH---hhhccc-ccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 93 GERIINVDHGDPTMYEKYW---QKVGDK-TTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~---~~~~~~-~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
...+|||+.|.|+....+. +..... ..++.........|++..| .++||++||++++. ++++|++
T Consensus 32 ~~~~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g-----~~~lr~~ia~~~~~------~~~~i~~ 100 (427)
T 3ppl_A 32 KNLKLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDG-----IVDIRQIWADLLGV------PVEQVLA 100 (427)
T ss_dssp TCCCEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSC-----CHHHHHHHHHHHTS------CGGGEEE
T ss_pred CCceEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCC-----cHHHHHHHHHHhCC------CcceEEE
Confidence 3467999999998654321 222110 2223333333457988888 59999999999953 4679999
Q ss_pred ccCHHHHH--HHHHHHhcC--C----------CCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc-----ccc---
Q 012785 169 GTGSTQLF--QAALYALSS--Q----------DASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK-----RFN--- 226 (456)
Q Consensus 169 t~G~~~al--~~~~~~l~~--~----------gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~-----~l~--- 226 (456)
|+|+++++ +++++++.. + || +|++++|+|+.+...++..|.+++.++.|.+ .++
T Consensus 101 t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd----~V~v~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~l~~~l 176 (427)
T 3ppl_A 101 GDASSLNIMFDVISWSYIFGNNDSVQPWSKEETV----KWICPVPGYDRHFSITERFGFEMISVPMNEDGPDMDAVEELV 176 (427)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCC----EEEEEESCCHHHHHHHHHTTCEEEEEEEETTEECHHHHHHHT
T ss_pred eCCcHHHHHHHHHHHHHhccCCcccccccCCCCC----EEEEcCCCcHHHHHHHHHcCCEEEEeCCCCCCCCHHHHHHHH
Confidence 99999999 588888876 6 78 9999999999999999999999998876543 333
Q ss_pred -cCCCeEEEEc-CCCCCCcccchH--------Hh-hhcCcEEEeeecCCCCCCCC-------CC------CCCCCcEEEe
Q 012785 227 -KDGPYIELVT-SPNNPDGSVRQS--------VV-NRSGGILVHDLAYYWPQYTS-------IT------YPADHDLMLF 282 (456)
Q Consensus 227 -~~~~~~i~v~-~P~NPtG~~~~~--------l~-~~~~~~iI~De~y~~~~~~~-------~~------~~~~~~i~i~ 282 (456)
..++++++++ +||||||.+++. +| +++|+++|+||+|.+..+.. +. ...+++|+++
T Consensus 177 ~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 256 (427)
T 3ppl_A 177 KNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFT 256 (427)
T ss_dssp TSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEE
T ss_pred hcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEe
Confidence 2356787754 789999999982 67 89999999999998632221 11 2467899999
Q ss_pred cCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHH
Q 012785 283 TVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWK 362 (456)
Q Consensus 283 S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 362 (456)
||||. +++|+|+||++++ +++++.+.......+++++.+.|.++..+|+.. + ..++++++.++.++++++
T Consensus 257 S~SK~-~~~G~r~G~~~~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~--~------~~~~~~~~~~~~~~~~~~ 326 (427)
T 3ppl_A 257 STSKI-TLAGAGVSFFLTS-AENRKWYTGHAGIRGIGPNKVNQLAHARYFGDA--E------GVRAVMRKHAASLAPKFN 326 (427)
T ss_dssp ESTTT-SCTTSSCEEEECC-HHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSH--H------HHHHHHHHHHHHHHHHHH
T ss_pred chhhc-cCcCccEEEEEcC-HHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCh--h------hHHHHHHHHHHHHHHHHH
Confidence 99999 6799999999997 999999999888788999999999999998721 1 135788899999999999
Q ss_pred HHHHHHHhc----CCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeec-CCCCC----CCCCe
Q 012785 363 QLRMAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRS-GKHFG----FSPKY 432 (456)
Q Consensus 363 ~l~~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~p-g~~fg----~~~~~ 432 (456)
.+.+.|.+. +.+.+..|.+++ |+|++++. +.+.+.+.|.++||.++| |..|+ ..+++
T Consensus 327 ~l~~~L~~~l~~~~~~~~~~p~~g~-------------~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~ 393 (427)
T 3ppl_A 327 KVLEILDSRLAEYGVAQWTVPAGGY-------------FISLDVVPGTASRVAELAKEAGIALTGAGSSYPLRQDPENKN 393 (427)
T ss_dssp HHHHHHHHHHGGGTCCEECCCSBSS-------------CEEEECSTTCHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCE
T ss_pred HHHHHHHHhcCCCCceEEeCCCccE-------------EEEEECCcchHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCe
Confidence 999888652 345666676776 89999975 466788889999999999 55564 25789
Q ss_pred EEEEecC-ChhHHHHHHHHHHhhh
Q 012785 433 VRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 433 iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
+||+++. +++++++++++|++++
T Consensus 394 ~Ris~~~~~~~~i~~~~~~l~~~l 417 (427)
T 3ppl_A 394 LRLAPSLPPVEELEVAMDGVATCV 417 (427)
T ss_dssp EEECCSSSCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHH
Confidence 9999987 7899999999999875
No 23
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=100.00 E-value=1.3e-39 Score=326.77 Aligned_cols=320 Identities=19% Similarity=0.264 Sum_probs=252.2
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCc-cccccccCCCCcccCCCHHHHHHHHHHHH-HhcCccCCCceEEEcc
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGW-QSLSYFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAITENHHIVVGT 170 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~I~~t~ 170 (456)
++.+|||+.|+|++++++.+.+... ..+.... .....|++..| .++||+++++++. .+|.... +++|++|+
T Consensus 34 ~~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~~~~~~~~y~~~~g-----~~~lr~~la~~l~~~~g~~~~-~~~i~~~~ 106 (398)
T 3ele_A 34 KENVYDFSIGNPSIPAPQIVNDTIK-ELVTDYDSVALHGYTSAQG-----DVETRAAIAEFLNNTHGTHFN-ADNLYMTM 106 (398)
T ss_dssp GGGCEECCSCCCCSCCCHHHHHHHH-HHHHHSCHHHHHSCCCTTC-----CHHHHHHHHHHHHHHHCCCCC-GGGEEEES
T ss_pred CCCeEEeecCCCCCCCCHHHHHHHH-HHHhcCCccccCCcCCCCC-----cHHHHHHHHHHHHHHhCCCCC-hHHEEEcc
Confidence 4578999999999877665554322 2222211 11346877788 5999999999995 4565554 57999999
Q ss_pred CHHHHHHHHHHHhcCCC-CCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-------ccccc---CCCeEEEEcCCC
Q 012785 171 GSTQLFQAALYALSSQD-ASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-------KRFNK---DGPYIELVTSPN 239 (456)
Q Consensus 171 G~~~al~~~~~~l~~~g-d~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-------~~l~~---~~~~~i~v~~P~ 239 (456)
|+++++.+++++++++| | +|++++|+|+.+...++..|.+++.++.|. +.++. .+++++++++||
T Consensus 107 g~~~al~~~~~~l~~~g~d----~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~ 182 (398)
T 3ele_A 107 GAAASLSICFRALTSDAYD----EFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQIDFDALEERINAHTRGVIINSPN 182 (398)
T ss_dssp SHHHHHHHHHHHHCCSTTC----EEEEESSCCTHHHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEECSSC
T ss_pred CHHHHHHHHHHHHcCCCCC----EEEEeCCCchhhHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEEcCCC
Confidence 99999999999999999 9 999999999999999999999999887653 33332 367899999999
Q ss_pred CCCcccch--------HHhhh------cCcEEEeeecCCCCCCC-----CCCCCCCCcEEEecCccccCCCCceEEEEEE
Q 012785 240 NPDGSVRQ--------SVVNR------SGGILVHDLAYYWPQYT-----SITYPADHDLMLFTVSKSTGHAGTRIGWALV 300 (456)
Q Consensus 240 NPtG~~~~--------~l~~~------~~~~iI~De~y~~~~~~-----~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~ 300 (456)
||||.+++ ++|++ +|+++|+||+|.+..+. ......+++++++||||.+|++|+|+||+++
T Consensus 183 nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 262 (398)
T 3ele_A 183 NPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPGERIGYVLV 262 (398)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTTTCCEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCccceeEEEEE
Confidence 99999988 26777 89999999999864322 1223457899999999999999999999999
Q ss_pred eCHH------HHHHHHHHHhh-ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012785 301 KDME------VAKKMTKYIEL-NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGL 373 (456)
Q Consensus 301 ~~~~------~~~~l~~~~~~-~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~ 373 (456)
+ ++ +.+.+...... .+.+++.+.|.++..+++ +. . .++.++++++.+.+.|++++
T Consensus 263 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~--------~-----~~~~~~~~~~~l~~~L~~~g- 324 (398)
T 3ele_A 263 P-DEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQG---AT--------G-----DINAYKENRDLLYEGLTRIG- 324 (398)
T ss_dssp C-TTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTT---CC--------C-----CHHHHHHHHHHHHHHHHHHT-
T ss_pred c-chhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhc---CH--------H-----HHHHHHHHHHHHHHHHHHcC-
Confidence 7 54 44455444333 357788899998887776 22 1 35678888999999998874
Q ss_pred ccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHH
Q 012785 374 FSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLS 452 (456)
Q Consensus 374 ~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~ 452 (456)
+.+..+.+++ |+|++++. +.+.+.+.|+++||.++||..|+. ++++||+++.++|++++++++|+
T Consensus 325 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~-~~~iRis~~~~~e~i~~~l~~l~ 390 (398)
T 3ele_A 325 YHCFKPDGAF-------------YMFVKALEDDSNAFCEKAKEEDVLIVAADGFGC-PGWVRISYCVDREMIKHSMPAFE 390 (398)
T ss_dssp CCEECCSBSS-------------EEEEECSSSCHHHHHHHHHTTTEECEESGGGTC-TTEEEEECCSCHHHHHHHHHHHH
T ss_pred CeecCCCeeE-------------EEEEEcCCCCHHHHHHHHHHCCEEEeCccccCC-CCeEEEEecCCHHHHHHHHHHHH
Confidence 5666677776 79999864 566777888999999999999975 78999999879999999999999
Q ss_pred hhh
Q 012785 453 KIL 455 (456)
Q Consensus 453 ~~l 455 (456)
+++
T Consensus 391 ~~l 393 (398)
T 3ele_A 391 KIY 393 (398)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 24
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=100.00 E-value=4.2e-39 Score=322.06 Aligned_cols=325 Identities=18% Similarity=0.242 Sum_probs=261.8
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEc
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVG 169 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t 169 (456)
..++.+|||+.|+|+++.++.+.+... ..+..+ ...|++..| ..+|+++++++++. +|.... +++|++|
T Consensus 27 ~~g~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~---~~~y~~~~g-----~~~l~~~la~~~~~~~g~~~~-~~~v~~~ 96 (388)
T 1j32_A 27 AEGIDVCSFSAGEPDFNTPKHIVEAAK-AALEQG---KTRYGPAAG-----EPRLREAIAQKLQRDNGLCYG-ADNILVT 96 (388)
T ss_dssp TTTCCCEECCCSSCSSCCCHHHHHHHH-HHHHTT---CCSCCCTTC-----CHHHHHHHHHHHHHHHCCCCC-GGGEEEE
T ss_pred hcCCCEEECCCCCCCCCCCHHHHHHHH-HHHhcC---CCCCCCCCC-----CHHHHHHHHHHHHHhcCCCCC-hhhEEEc
Confidence 346788999999998776655544322 112222 235888777 59999999999964 565554 5799999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc--------ccccc---CCCeEEEEcCC
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA--------KRFNK---DGPYIELVTSP 238 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~--------~~l~~---~~~~~i~v~~P 238 (456)
+|+++++.++++++..+|| +|++++|+|+.+...++..|.+++.++.+. +.++. .+++++++++|
T Consensus 97 ~g~~~a~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p 172 (388)
T 1j32_A 97 NGGKQSIFNLMLAMIEPGD----EVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTP 172 (388)
T ss_dssp SHHHHHHHHHHHHHCCTTC----EEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESS
T ss_pred CCHHHHHHHHHHHhcCCCC----EEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeCC
Confidence 9999999999999999999 999999999999999999999988777653 33322 35788999999
Q ss_pred CCCCcccch--------HHhhhcCcEEEeeecCCCCCCC-----CCCCC----CCCcEEEecCccccCCCCceEEEEEEe
Q 012785 239 NNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT-----SITYP----ADHDLMLFTVSKSTGHAGTRIGWALVK 301 (456)
Q Consensus 239 ~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~-----~~~~~----~~~~i~i~S~SK~~g~~G~RiG~l~~~ 301 (456)
|||||.+++ ++|+++|+++|+||+|.+..+. ++... .+++++++|+||.+|++|+|+||++++
T Consensus 173 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~ 252 (388)
T 1j32_A 173 SNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGP 252 (388)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEEeC
Confidence 999999976 2788999999999999864322 22211 357899999999999999999999996
Q ss_pred CHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCC
Q 012785 302 DMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPS 381 (456)
Q Consensus 302 ~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g 381 (456)
+++++.+.......+++++++.|.++.++|+ .. ++++++.++.++++++.+.+.|++++++.+..+.+
T Consensus 253 -~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~---~~--------~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 320 (388)
T 1j32_A 253 -VPLVKAATKIQGHSTSNVCTFAQYGAIAAYE---NS--------QDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDG 320 (388)
T ss_dssp -HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHH---SC--------SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCB
T ss_pred -HHHHHHHHHHHhhcccCCCHHHHHHHHHHHh---CC--------cHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCe
Confidence 8999999888777788999999999988887 22 56888999999999999999999886677777777
Q ss_pred cccccccccCCCCCceEEeecCc---cHHHHHHHHH-hCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 382 QFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLK-GNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 382 ~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~-~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
++ |+|++++. +...+.+.|. ++||.++||..|+. ++++||+++.+++++++++++|++++
T Consensus 321 ~~-------------~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-~~~iRis~~~~~~~i~~~~~~l~~~l 384 (388)
T 1j32_A 321 AF-------------YMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGA-DDCIRLSYATDLDTIKRGMERLEKFL 384 (388)
T ss_dssp TT-------------EECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTC-TTBEEEECCSCHHHHHHHHHHHHHHH
T ss_pred eE-------------EEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCC-CCcEEEEecCCHHHHHHHHHHHHHHH
Confidence 66 78888752 4556666665 58999999999975 78999999889999999999999875
No 25
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=100.00 E-value=5.1e-39 Score=320.44 Aligned_cols=324 Identities=16% Similarity=0.198 Sum_probs=261.4
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccC
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTG 171 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G 171 (456)
++++|||+.|+|+++.++.+.++.. ..+..+ ...|++.. .++++++++++.. +|.... +++|++|+|
T Consensus 23 ~~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~---~~~y~~~~-------~~~~~~l~~~l~~~~g~~~~-~~~v~~~~g 90 (383)
T 3kax_A 23 NEELIHAWIADMDFEVPQPIQTALK-KRIEHP---IFGYTLPP-------ENIGDIICNWTKKQYNWDIQ-KEWIVFSAG 90 (383)
T ss_dssp SSCCEECCCSSCSSCCCHHHHHHHH-HHHHSC---CCCCCCCC-------TTHHHHHHHHHHHHHCCCCC-GGGEEEESC
T ss_pred CCCeeecccccCCCCCCHHHHHHHH-HHHhcC---CCCCCCCC-------HHHHHHHHHHHHHHhCCCCC-hhhEEEcCC
Confidence 4688999999999987776665422 122222 23466542 7899999999854 565444 579999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc---------Ccccccc---CCCeEEEEcCCC
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG---------DAKRFNK---DGPYIELVTSPN 239 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~---------d~~~l~~---~~~~~i~v~~P~ 239 (456)
+++++++++++++++|| +|+++.|+|+.+...++..|.+++.++. |.+.++. .+++++++++||
T Consensus 91 ~~~a~~~~~~~l~~~gd----~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~ 166 (383)
T 3kax_A 91 IVPALSTSIQAFTKENE----SVLVQPPIYPPFFEMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQQGVKLMLLCSPH 166 (383)
T ss_dssp HHHHHHHHHHHHCCTTC----EEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTTTCCEEEEESSB
T ss_pred HHHHHHHHHHHhCCCCC----EEEEcCCCcHHHHHHHHHcCCEEEeccceecCCcEEEcHHHHHHHhCcCCeEEEEeCCC
Confidence 99999999999999999 9999999999999999999999887664 4444432 367899999999
Q ss_pred CCCcccchH--------HhhhcCcEEEeeecCCCCCCC-----CCCCC----CCCcEEEecCccccCCCCceEEEEEEeC
Q 012785 240 NPDGSVRQS--------VVNRSGGILVHDLAYYWPQYT-----SITYP----ADHDLMLFTVSKSTGHAGTRIGWALVKD 302 (456)
Q Consensus 240 NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~-----~~~~~----~~~~i~i~S~SK~~g~~G~RiG~l~~~~ 302 (456)
||||.+++. +|+++|+++|+||+|.+..+. ++... .+++++++||||.+|++|+|+||+++++
T Consensus 167 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~ 246 (383)
T 3kax_A 167 NPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAARTITCMAPSKTFNIAGLQASIIIIPN 246 (383)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCC
T ss_pred CCCCcCcCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCceeHhhcCccccCcEEEEEEChhhccCcchhheEEEeCC
Confidence 999999872 589999999999999863322 22211 3788999999999999999999999966
Q ss_pred HHHHHHHHHHHhhc-cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh-cCCccccCCC
Q 012785 303 MEVAKKMTKYIELN-TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK-SGLFSVPELP 380 (456)
Q Consensus 303 ~~~~~~l~~~~~~~-~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~ 380 (456)
+++++.+....... ..+++++.|.++.++|+ .. ++++++.++.++++++.+.+.|++ ++++.+..+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~--------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 315 (383)
T 3kax_A 247 EKLRQAFTSIQYRQGFHGLNIFAYTAMQSAYT---EC--------NDWLNEIRFYIEDNAKFACEYIKDHIPTLSVMKPE 315 (383)
T ss_dssp HHHHHHHHHHHHHTTCCCCCHHHHHHHHHHTT---TC--------HHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCS
T ss_pred HHHHHHHHHHHhhcccCCCCHHHHHHHHHHHH---hh--------HHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCC
Confidence 89999998876544 34889999999999887 32 678899999999999999999988 5667777777
Q ss_pred CcccccccccCCCCCceEEeecCc---cHHHHHHHHH-hCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 381 SQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLK-GNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 381 g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~-~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
+++ ++|++++. +...+.+.|. ++||.++||..|+. .++++||+++.+++++++++++|++++
T Consensus 316 ~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~l 382 (383)
T 3kax_A 316 GSF-------------LLWIDCSALNLSQDERTKLLEEKGKIIVEPGEKYGLGGEEHIGINIGCPRSVLEEILNRLRHTF 382 (383)
T ss_dssp BSS-------------EEEEECGGGCCCHHHHHHHHHHTSCEECEESGGGCTTCTTEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred ceE-------------EEEEEccccCCCHHHHHHHHHhhCCEEeECchhhcCCCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 777 78898863 5666777775 79999999999975 578999999889999999999999987
Q ss_pred C
Q 012785 456 S 456 (456)
Q Consensus 456 ~ 456 (456)
+
T Consensus 383 ~ 383 (383)
T 3kax_A 383 S 383 (383)
T ss_dssp C
T ss_pred C
Confidence 4
No 26
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=100.00 E-value=1.4e-39 Score=330.39 Aligned_cols=326 Identities=17% Similarity=0.222 Sum_probs=252.5
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccc-cCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVI-PGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~-~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~ 170 (456)
.++++|+|++|+|+++.++.+.++....... ........|++..| .++|++++++|+.+ +.... +++|++|+
T Consensus 54 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g-----~~~l~~~ia~~~~~-~~~~~-~~~i~~t~ 126 (432)
T 3ei9_A 54 PDAQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQG-----AKPLRAAIAKTFYG-GLGIG-DDDVFVSD 126 (432)
T ss_dssp TTCCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTC-----CHHHHHHHHHHHHT-TTTCC-GGGEEEES
T ss_pred CCCCeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCC-----CHHHHHHHHHHHHc-cCCCC-cceEEECC
Confidence 4568999999999988887766543222111 11122346877777 59999999999963 44443 57999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCC------------eEeeeccCcc-c----ccc-CCCeE
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKS------------RLYKWAGDAK-R----FNK-DGPYI 232 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~------------~~~~~~~d~~-~----l~~-~~~~~ 232 (456)
|+++++.++ ..++.+|| +|++++|+|+++...++..|. +++.++.+.+ + ++. .++++
T Consensus 127 G~~~al~~l-~~l~~~gd----~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 201 (432)
T 3ei9_A 127 GAKCDISRL-QVMFGSNV----TIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVGRTDI 201 (432)
T ss_dssp CHHHHHHHH-HHHHCTTC----CEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGGCCCCSE
T ss_pred ChHHHHHHH-HHHcCCCC----EEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhhCCCCCE
Confidence 999999975 67788999 999999999999999988884 4555555432 2 222 36789
Q ss_pred EEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCC----CCCC---CCCCCcEEEecCccccCCCCceEEE
Q 012785 233 ELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY----TSIT---YPADHDLMLFTVSKSTGHAGTRIGW 297 (456)
Q Consensus 233 i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~----~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~ 297 (456)
+++++||||||.+++. +|+++|+++|+||+|.+..+ .++. ...+++|+++||||++|++|+|+||
T Consensus 202 v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~ 281 (432)
T 3ei9_A 202 IFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGW 281 (432)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEE
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccceEE
Confidence 9999999999999872 68999999999999985321 1221 2346789999999999999999999
Q ss_pred EEEeCHHH--------HHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 012785 298 ALVKDMEV--------AKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQ 369 (456)
Q Consensus 298 l~~~~~~~--------~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~ 369 (456)
++++ +++ .+.+.........++++++|.++.+++.. . ..++++++++.++++++.+.+.|+
T Consensus 282 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--~--------~~~~~~~~~~~~~~~~~~l~~~L~ 350 (432)
T 3ei9_A 282 TVIP-KKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTP--E--------GLEAMHKVIGFYKENTNIIIDTFT 350 (432)
T ss_dssp EECC-TTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSH--H--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEC-hHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhc--c--------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997 565 77887776666778999999999988862 1 146788999999999999999999
Q ss_pred hcCCccccCCCCcccccccccCCCCCceEEeecCc-cH-HHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHH
Q 012785 370 KSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EI-EDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNL 446 (456)
Q Consensus 370 ~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~-~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~ 446 (456)
+.+ +.+..+.+++ |+|++++. +. +.+..+++++||.++||..|+. +++++||++..+++++++
T Consensus 351 ~~g-~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~l~~ 416 (432)
T 3ei9_A 351 SLG-YDVYGGKNAP-------------YVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENILE 416 (432)
T ss_dssp HTT-CCEEECSSSS-------------EEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHH
T ss_pred HCC-ceecCCCcce-------------EEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecCCHHHHHH
Confidence 874 5555555555 89999974 33 4455566677999999999974 578999999889999999
Q ss_pred HHHHHHhh
Q 012785 447 FVQRLSKI 454 (456)
Q Consensus 447 ~l~~L~~~ 454 (456)
++++|++-
T Consensus 417 ~l~rl~~~ 424 (432)
T 3ei9_A 417 ACRRFKQL 424 (432)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999864
No 27
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=100.00 E-value=5.9e-39 Score=324.90 Aligned_cols=324 Identities=14% Similarity=0.149 Sum_probs=256.3
Q ss_pred CCeEEecCCCCC---CCchhHhhhccc-ccccccCccccccc-cCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 94 ERIINVDHGDPT---MYEKYWQKVGDK-TTIVIPGWQSLSYF-SDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 94 ~~~i~l~~g~p~---~~~~~~~~~~~~-~~~~~~~~~~~~~y-~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
...|||+.|.|+ ++.++.+.++.. ...+. .......| ++..| .++||++||++++. ++++|++
T Consensus 25 ~~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~-~~~~~~~Yp~~~~g-----~~~lr~~ia~~~~~------~~~~i~~ 92 (423)
T 3ez1_A 25 GLNLNMQRGQPADADFDLSNGLLTVLGAEDVRM-DGLDLRNYPGGVAG-----LPSARALFAGYLDV------KAENVLV 92 (423)
T ss_dssp TCCEESCCCCCCHHHHHTTGGGGGSCCGGGCEE-TTEETTSSCSCTTC-----CHHHHHHHHHHTTS------CGGGEEE
T ss_pred CceEecCCCCCChHhCCCcHHHHHHHhhhHHhh-cchhhhCCCCCCCC-----hHHHHHHHHHHhCC------ChhhEEE
Confidence 467999999999 666644544332 12222 22223568 77788 59999999999853 4679999
Q ss_pred ccCHHHHHH--HHHHHhcC--C---------CCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC-----ccccc----
Q 012785 169 GTGSTQLFQ--AALYALSS--Q---------DASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD-----AKRFN---- 226 (456)
Q Consensus 169 t~G~~~al~--~~~~~l~~--~---------gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d-----~~~l~---- 226 (456)
|+|+++++. +++++++. + || +|++++|+|+.+...++..|.+++.++.| .+.++
T Consensus 93 t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~ 168 (423)
T 3ez1_A 93 WNNSSLELQGLVLTFALLHGVRGSTGPWLSQTP----KMIVTVPGYDRHFLLLQTLGFELLTVDMQSDGPDVDAVERLAG 168 (423)
T ss_dssp CSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCC----EEEEEESCCHHHHHHHHHHTCEEEEEEEETTEECHHHHHHHHH
T ss_pred eCCcHHHHHHHHHHHHHhccCCCccccccCCCC----EEEEcCCCcHHHHHHHHHcCCEEEeccCCCCCCCHHHHHHHHh
Confidence 999999998 88888877 7 47 99999999999999999999999887764 33333
Q ss_pred -cCCCeEEEE-cCCCCCCcccchH--------Hh-hhcCcEEEeeecCCCCCCC-----C---CC------CCCCCcEEE
Q 012785 227 -KDGPYIELV-TSPNNPDGSVRQS--------VV-NRSGGILVHDLAYYWPQYT-----S---IT------YPADHDLML 281 (456)
Q Consensus 227 -~~~~~~i~v-~~P~NPtG~~~~~--------l~-~~~~~~iI~De~y~~~~~~-----~---~~------~~~~~~i~i 281 (456)
..++++|++ ++||||||.+++. +| +++|+++|+||+|.+..+. + +. ...+++|++
T Consensus 169 ~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 248 (423)
T 3ez1_A 169 TDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVF 248 (423)
T ss_dssp SCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEE
T ss_pred hCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEE
Confidence 246778864 5899999999983 67 8999999999999842211 1 11 256789999
Q ss_pred ecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHH
Q 012785 282 FTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRW 361 (456)
Q Consensus 282 ~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 361 (456)
+||||. +++|+|+||++++ +++++.+.......+++++.+.|.++..+|+.+. + ..++++++.++.+++++
T Consensus 249 ~S~sK~-~~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~------~~~~~~~~~~~~~~~~~ 319 (423)
T 3ez1_A 249 ASTSKI-TFAGAGLGFVASS-EDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYP-G------GLEGLMRDHAAIIAPKF 319 (423)
T ss_dssp EESTTT-SCSSSSCEEEEEC-HHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHST-T------HHHHHHHHHHHHHHHHH
T ss_pred eCchhh-ccCCcceEEEEeC-HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhcc-c------hHHHHHHHHHHHHHHHH
Confidence 999998 5699999999997 9999999999888889999999999999998311 2 23678889999999999
Q ss_pred HHHHHHHHh----cC-CccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeec-CCCCCC----CC
Q 012785 362 KQLRMAVQK----SG-LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRS-GKHFGF----SP 430 (456)
Q Consensus 362 ~~l~~~L~~----~~-~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~p-g~~fg~----~~ 430 (456)
+.+.+.|.+ .+ .+.+..|.+++ |+|++++. +.+.+.+.++++||.++| |..|+. .+
T Consensus 320 ~~l~~~l~~~l~~~~~~~~~~~p~~g~-------------~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~ 386 (423)
T 3ez1_A 320 RAVDEVLRAELGEGGEYATWTLPKGGY-------------FISLDTAEPVADRVVKLAEAAGVSLTPAGATYPAGQDPHN 386 (423)
T ss_dssp HHHHHHHHHHHTTTTSSEEECCCSBSS-------------CEEEEESSSCHHHHHHHHHHTTEECCCTTTTSSTTCCSSS
T ss_pred HHHHHHHHHhcCcCCCceEEeCCCccE-------------EEEEECCCCcHHHHHHHHHHCCcEEecCcccccCCCCCCC
Confidence 998888865 23 35556666666 89999964 567888899999999999 767752 47
Q ss_pred CeEEEEecC-ChhHHHHHHHHHHhhh
Q 012785 431 KYVRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 431 ~~iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
+++||+++. +++++++++++|++++
T Consensus 387 ~~iRis~~~~~~~~i~~~~~~l~~~l 412 (423)
T 3ez1_A 387 RNLRLAPTRPPVEEVRTAMQVVAACI 412 (423)
T ss_dssp CEEEECCSSSCHHHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 899999986 8999999999999876
No 28
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=100.00 E-value=3.5e-39 Score=322.78 Aligned_cols=324 Identities=20% Similarity=0.237 Sum_probs=259.5
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCce-EEEccC
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHH-IVVGTG 171 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~-I~~t~G 171 (456)
+++|||+.|+|+++.++.+.+... ..+... ...|++..| .++||+++++++.. +|.... +++ |++|+|
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~---~~~y~~~~g-----~~~l~~~la~~~~~~~g~~~~-~~~~v~~~~g 95 (389)
T 1gd9_A 26 KDVISLGIGEPDFDTPQHIKEYAK-EALDKG---LTHYGPNIG-----LLELREAIAEKLKKQNGIEAD-PKTEIMVLLG 95 (389)
T ss_dssp SSCEECCCCSCSSCCCHHHHHHHH-HHHHTT---CCSCCCTTC-----CHHHHHHHHHHHHHHHCCCCC-TTTSEEEESS
T ss_pred cCeEecCCCCCCCCCCHHHHHHHH-HHHhCC---CCCCCCCCC-----cHHHHHHHHHHHHHHhCCCCC-CCCeEEEcCC
Confidence 578999999998765554443322 112222 235887777 59999999999954 465554 467 999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc--------ccccc---CCCeEEEEcCCCC
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA--------KRFNK---DGPYIELVTSPNN 240 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~--------~~l~~---~~~~~i~v~~P~N 240 (456)
+++++.+++++++.+|| +|++++|+|+.+...++..|.+++.++.+. +.++. .+++++++++|||
T Consensus 96 ~~~a~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n 171 (389)
T 1gd9_A 96 ANQAFLMGLSAFLKDGE----EVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCN 171 (389)
T ss_dssp TTHHHHHHHTTTCCTTC----EEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCT
T ss_pred hHHHHHHHHHHhCCCCC----EEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEECCCC
Confidence 99999999999999999 999999999999999999999998777543 33322 2578899999999
Q ss_pred CCcccch--------HHhhhcCcEEEeeecCCCCCCC-----CCCC---CCCCcEEEecCccccCCCCceEEEEEEeCHH
Q 012785 241 PDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT-----SITY---PADHDLMLFTVSKSTGHAGTRIGWALVKDME 304 (456)
Q Consensus 241 PtG~~~~--------~l~~~~~~~iI~De~y~~~~~~-----~~~~---~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~ 304 (456)
|||.+++ ++|+++|+++|+||+|.+..+. ++.. ..+++++++||||.+|++|+|+||++++ ++
T Consensus 172 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~ 250 (389)
T 1gd9_A 172 PTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAP-SW 250 (389)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECC-HH
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEEC-HH
Confidence 9999986 2788999999999999864332 2222 2467999999999999999999999997 99
Q ss_pred HHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccc
Q 012785 305 VAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFC 384 (456)
Q Consensus 305 ~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~ 384 (456)
+++.+.......+++++++.|.++.++|+. . ..++++++.++.++++++.+.+.|++. ++.+..+.+++
T Consensus 251 ~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~------~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~- 319 (389)
T 1gd9_A 251 IIERMVKFQMYNATCPVTFIQYAAAKALKD---E------RSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAF- 319 (389)
T ss_dssp HHHHHHHHHTTTTCSCCHHHHHHHHHHHTC---H------HHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCBTT-
T ss_pred HHHHHHHHHhhhccCCCHHHHHHHHHHHhC---C------CcchHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeee-
Confidence 999998887767789999999999998872 2 012378999999999999999999987 46666666666
Q ss_pred ccccccCCCCCceEEeecCc---cHHHHHHHHH-hCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 385 TFLGRAFEPQPAFAWLKCEQ---EIEDCESFLK-GNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 385 ~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~-~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|+|++++. +...+.+.|. ++||.++||..|+. +++++||+++.+++++++++++|++++
T Consensus 320 ------------~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~~ 383 (389)
T 1gd9_A 320 ------------YIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVL 383 (389)
T ss_dssp ------------EECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHH
T ss_pred ------------EEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 78988852 4566777776 89999999999974 478999999889999999999999875
No 29
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=100.00 E-value=2.4e-39 Score=325.63 Aligned_cols=324 Identities=15% Similarity=0.199 Sum_probs=260.8
Q ss_pred CeEEecCCCCC-CCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccCH
Q 012785 95 RIINVDHGDPT-MYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTGS 172 (456)
Q Consensus 95 ~~i~l~~g~p~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~ 172 (456)
.+|||++|+|. ++.++.+.++.. ..+.... ...|++..| ..++++++++++.. +|....++++|++|+|+
T Consensus 40 ~~id~~~g~~~~~~~~~~v~~a~~-~~~~~~~--~~~y~~~~g-----~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~ 111 (407)
T 3nra_A 40 RPVDFSHGDVDAHEPTPGAFDLFS-AGVQSGG--VQAYTEYRG-----DLGIRDLLAPRLAAFTGAPVDARDGLIITPGT 111 (407)
T ss_dssp CCEETTSCCTTTSCCCTTHHHHHH-HHHHHTH--HHHSCCTTC-----CHHHHHHHHHHHHHHHTSCCCTTTSEEEESHH
T ss_pred ceeeecCcCCCCCCCcHHHHHHHH-HHHhcCC--CCCcCCCCC-----CHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCc
Confidence 58999999987 555555554322 1122221 224777777 59999999999854 57665444799999999
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc------------Ccccccc---CCCeEEEEcC
Q 012785 173 TQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG------------DAKRFNK---DGPYIELVTS 237 (456)
Q Consensus 173 ~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~------------d~~~l~~---~~~~~i~v~~ 237 (456)
++++..++.+++.+|| +|+++.|+|+.+...++..|.+++.++. |.+.++. .+++++++++
T Consensus 112 ~~a~~~~~~~l~~~gd----~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 187 (407)
T 3nra_A 112 QGALFLAVAATVARGD----KVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSN 187 (407)
T ss_dssp HHHHHHHHHTTCCTTC----EEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHHHHHhCCCCC----EEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcC
Confidence 9999999999999999 9999999999999999999999988776 3344432 2678999999
Q ss_pred CCCCCcccch--------HHhhhcCcEEEeeecCCCCCC-----CCCC----CCCCCcEEEecCccccCCCCceEEEEEE
Q 012785 238 PNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQY-----TSIT----YPADHDLMLFTVSKSTGHAGTRIGWALV 300 (456)
Q Consensus 238 P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~-----~~~~----~~~~~~i~i~S~SK~~g~~G~RiG~l~~ 300 (456)
||||||.+++ ++|+++|+++|+||+|.+..+ .++. ...+++++++||||.+|++|+|+||+++
T Consensus 188 p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 267 (407)
T 3nra_A 188 PNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFG 267 (407)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEE
T ss_pred CCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEc
Confidence 9999999987 278899999999999985322 2221 2356789999999999999999999999
Q ss_pred eCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC
Q 012785 301 KDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELP 380 (456)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 380 (456)
+ +++++.+.......+++.+++.|.++.++|+ +. ++++++.+++++++++.+.+.|++++++.+..+.
T Consensus 268 ~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~---~~--------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 335 (407)
T 3nra_A 268 S-RAIIARMEKLQAIVSLRAAGYSQAVLRGWFD---EA--------PGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQ 335 (407)
T ss_dssp C-HHHHHHHHHHHHHHTSSSCHHHHGGGGGTTC---CC--------TTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCS
T ss_pred C-HHHHHHHHHHHhhhccCCChHHHHHHHHHHh---cc--------chHHHHHHHHHHHHHHHHHHHHhcCCCceeccCC
Confidence 6 9999999998887888899999988888776 22 4678888999999999999999988667776666
Q ss_pred CcccccccccCCCCCceEEeecCc---cHHHHHHHH-HhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 381 SQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFL-KGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 381 g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l-~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
+++ |+|++++. +...+.+.| +++||.++||..|+. ..+++||+++.+++++++++++|++++
T Consensus 336 ~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~~ 402 (407)
T 3nra_A 336 AGS-------------YLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLV 402 (407)
T ss_dssp BSS-------------EECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCSCHHHHHHHHHHHHHHH
T ss_pred eeE-------------EEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 666 89998864 455666666 467999999999974 578999999889999999999999876
No 30
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=100.00 E-value=1.1e-38 Score=318.90 Aligned_cols=321 Identities=16% Similarity=0.240 Sum_probs=257.8
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCc-eEEEccC
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENH-HIVVGTG 171 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~-~I~~t~G 171 (456)
.++|||+.|+|+++.++.+.+... ..+..+ ...|++..| .++|++++++++.. +|.... ++ +|++|+|
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~---~~~y~~~~g-----~~~l~~~la~~l~~~~g~~~~-~~~~v~~~~g 99 (386)
T 1u08_A 30 HQAINLSQGFPDFDGPRYLQERLA-HHVAQG---ANQYAPMTG-----VQALREAIAQKTERLYGYQPD-ADSDITVTAG 99 (386)
T ss_dssp TTCEECCCSSCSSCCCHHHHHHHH-HHHHTT---CCSCCCTTC-----CHHHHHHHHHHHHHHHSCCCC-TTTTEEEESS
T ss_pred CCeEEecCCCCCCCCCHHHHHHHH-HHHHhh---ccCCCCCCC-----CHHHHHHHHHHHHHHhCCCCC-CCCCEEEcCC
Confidence 468999999998766555544322 112221 246887777 59999999999854 565554 56 8999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC-------cccccc---CCCeEEEEcCCCCC
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD-------AKRFNK---DGPYIELVTSPNNP 241 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d-------~~~l~~---~~~~~i~v~~P~NP 241 (456)
+++++.++++++..+|| +|++++|+|+.+...++..|.+++.++.| .+.++. .+++++++++||||
T Consensus 100 ~~~a~~~~~~~~~~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~np 175 (386)
T 1u08_A 100 ATEALYAAITALVRNGD----EVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNP 175 (386)
T ss_dssp HHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTT
T ss_pred hHHHHHHHHHHhCCCCC----EEEEeCCCchhHHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhcccCEEEEEeCCCCC
Confidence 99999999999999999 99999999999999999999998877654 333332 36789999999999
Q ss_pred Ccccch--------HHhhhcCcEEEeeecCCCCCC-----CCCCC---CCCCcEEEecCccccCCCCceEEEEEEeCHHH
Q 012785 242 DGSVRQ--------SVVNRSGGILVHDLAYYWPQY-----TSITY---PADHDLMLFTVSKSTGHAGTRIGWALVKDMEV 305 (456)
Q Consensus 242 tG~~~~--------~l~~~~~~~iI~De~y~~~~~-----~~~~~---~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~ 305 (456)
||.+++ ++|+++|+++|+||+|.+..+ .++.. ..+++++++||||.+|++|+|+||++++ +++
T Consensus 176 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~ 254 (386)
T 1u08_A 176 SATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAP-API 254 (386)
T ss_dssp TCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECC-HHH
T ss_pred CCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcC-HHH
Confidence 999986 278899999999999986322 22222 2468999999999999999999999997 999
Q ss_pred HHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccc
Q 012785 306 AKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCT 385 (456)
Q Consensus 306 ~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~ 385 (456)
++.+.......+++++.+.|.++.++|+. . ++++++.++.++++++.+.+.|++.+ +.+..+.+++
T Consensus 255 ~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~--------~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~-- 320 (386)
T 1u08_A 255 SAEIRKVHQYLTFSVNTPAQLALADMLRA---E--------PEHYLALPDFYRQKRDILVNALNESR-LEILPCEGTY-- 320 (386)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHH---C--------THHHHTHHHHHHHHHHHHHHHTTSSS-CEECCCCBSS--
T ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHhC---C--------cHHHHHHHHHHHHHHHHHHHHHHHCC-CeecCCCceE--
Confidence 99998887767889999999999998873 2 46788999999999999999998874 5666666666
Q ss_pred cccccCCCCCceEEeecCc----cHHHHHHHH-HhCCEEeecCCCCCC---CCCeEEEEecCChhHHHHHHHHHHhh
Q 012785 386 FLGRAFEPQPAFAWLKCEQ----EIEDCESFL-KGNKILTRSGKHFGF---SPKYVRISMLDRDENYNLFVQRLSKI 454 (456)
Q Consensus 386 ~~~~~~~~~~~f~~~~~~~----~~~~~~~~l-~~~gI~v~pg~~fg~---~~~~iRis~~~~~e~i~~~l~~L~~~ 454 (456)
|+|++++. +...+.+.+ +++||.++||..|+. .++++||+++.+++++++++++|+++
T Consensus 321 -----------~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~ 386 (386)
T 1u08_A 321 -----------FLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQL 386 (386)
T ss_dssp -----------EEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTTC
T ss_pred -----------EEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcCCHHHHHHHHHHHhhC
Confidence 89999863 355566644 579999999998863 56899999988999999999999763
No 31
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=100.00 E-value=4.4e-39 Score=319.24 Aligned_cols=309 Identities=19% Similarity=0.229 Sum_probs=253.3
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
+++|+|+.+++++++++.+.+.... .+ . ....|++..+ .+||++++++++. ++++|++|+|++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~-~~-~---~~~~y~~~~~------~~lr~~la~~~~~------~~~~v~~~~g~~ 92 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQ-NA-N---KAHLYPDDSM------IELKSTLAQKYKV------QNENIIIGAGSD 92 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHH-HG-G---GTTSCCCTTC------HHHHHHHHHHHTC------CGGGEEEESSHH
T ss_pred CceEEecCCCCCCCCCHHHHHHHHH-HH-H---hhccCCCCCh------HHHHHHHHHHhCC------CcceEEECCCHH
Confidence 6789999999998877666543221 11 1 2346877765 8999999999863 457999999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc------Ccccccc---CCCeEEEEcCCCCCCcc
Q 012785 174 QLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG------DAKRFNK---DGPYIELVTSPNNPDGS 244 (456)
Q Consensus 174 ~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~------d~~~l~~---~~~~~i~v~~P~NPtG~ 244 (456)
+++++++.+++++|| +|+++.|+|+.+...++..|.+++.++. |.+.++. .+++++++++||||||.
T Consensus 93 ~a~~~~~~~l~~~gd----~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~ 168 (365)
T 3get_A 93 QVIEFAIHSKLNSKN----AFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCLPNNPLGE 168 (365)
T ss_dssp HHHHHHHHHHCCTTC----EEEECSSCCTHHHHHHHHHTCEEEECSSSSCCHHHHHHHHHHTTTTEEEEEEESSCTTTCC
T ss_pred HHHHHHHHHHhCCCC----EEEEeCCChHHHHHHHHHcCCEEEEEecCCCCCCCHHHHHHHhCCCCCEEEEcCCCCCCCC
Confidence 999999999999999 9999999999999999999999988875 3444432 46799999999999999
Q ss_pred cchH-----Hhh--hcCcEEEeeecCCCCCC-------CCC---CCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHH
Q 012785 245 VRQS-----VVN--RSGGILVHDLAYYWPQY-------TSI---TYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAK 307 (456)
Q Consensus 245 ~~~~-----l~~--~~~~~iI~De~y~~~~~-------~~~---~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~ 307 (456)
+++. +++ ++|+++|+||+|.+..+ .+. ....+++++++||||.+|++|+|+||++++ +++++
T Consensus 169 ~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~ 247 (365)
T 3get_A 169 CLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIAN-ANIIS 247 (365)
T ss_dssp CCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEEC-HHHHH
T ss_pred CcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcC-HHHHH
Confidence 9872 554 57999999999983221 111 123578999999999999999999999995 99999
Q ss_pred HHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccc
Q 012785 308 KMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFL 387 (456)
Q Consensus 308 ~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~ 387 (456)
.+..... .++++.+.|.++.++|+ + .+++++.+++++++++.+.+.|++++ +.+.++
T Consensus 248 ~~~~~~~--~~~~~~~~~~~~~~~l~---~---------~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~-------- 304 (365)
T 3get_A 248 AFYKLRA--PFNVSNLALKAAVAAMD---D---------DEFTEKTLENNFSQMELYKEFAKKHN-IKIIDS-------- 304 (365)
T ss_dssp HHHHHSC--TTCSCHHHHHHHHHHHT---C---------HHHHHHHHHHHHHHHHHHHHHHHHTT-CEECCC--------
T ss_pred HHHHhcC--CCCcCHHHHHHHHHHhC---C---------HHHHHHHHHHHHHHHHHHHHHHHhCC-CEECCC--------
Confidence 9988765 57799999999999987 2 47889999999999999999999873 444333
Q ss_pred cccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 388 GRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 388 ~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
.++|+|++++. +.+.+.+.|.++||.++||..|+ ++++||+++ ++++++++++.|+++++
T Consensus 305 ------~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~--~~~iRis~~-~~~~i~~l~~~l~~~l~ 365 (365)
T 3get_A 305 ------YTNFITYFFDEKNSTDLSEKLLKKGIIIRNLKSYG--LNAIRITIG-TSYENEKFFTEFDKILR 365 (365)
T ss_dssp ------SSSEEEEECSSSCHHHHHHHHHTTTEECEECGGGT--CSEEEEECC-CHHHHHHHHHHHHHHHC
T ss_pred ------CCeEEEEECCCCCHHHHHHHHHHCCEEEEECccCC--CCEEEEEcC-CHHHHHHHHHHHHHHhC
Confidence 33479999976 67788888889999999999998 889999995 88999999999999874
No 32
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=100.00 E-value=1.4e-38 Score=321.13 Aligned_cols=333 Identities=17% Similarity=0.200 Sum_probs=249.2
Q ss_pred CCCCeEEecCCCCCCCch--hHhhhcccccccccCc--cccccccCCCCcccCCCHHHHHHHHHHHH-HhcCccCCCceE
Q 012785 92 GGERIINVDHGDPTMYEK--YWQKVGDKTTIVIPGW--QSLSYFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAITENHHI 166 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~--~~~~~~~~~~~~~~~~--~~~~~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~I 166 (456)
.++++|+|++|+|+..++ +.+.+... ..+.+.. .....|++..| .++||+++|+++. .+|.... +++|
T Consensus 29 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~y~~~~g-----~~~lr~~ia~~~~~~~g~~~~-~~~i 101 (417)
T 3g7q_A 29 RTPGAIMLGGGNPAHIPAMQDYFQTLLT-DMVESGKAADALCNYDGPQG-----KTALLNALAVLLRETLGWDIE-PQNI 101 (417)
T ss_dssp ---CCEECSCCCCCCCHHHHHHHHHHHH-HHHHHTHHHHHHHSTTCTTS-----HHHHHHHHHHHHHHHHCCCCC-GGGE
T ss_pred cCCCceEecCcCCCCCChHHHHHHHHHH-HHhhCCcccceeeccCCCCC-----cHHHHHHHHHHHHHHhCCCCC-cccE
Confidence 346789999999998543 22222211 1122221 12236888888 4999999999995 4666664 5799
Q ss_pred EEccCHHHHHHHHHHHhcCCCC-CCCcEEEEe-CCCCCChhhhhhhc------CCeEee-------eccCccccc-cCCC
Q 012785 167 VVGTGSTQLFQAALYALSSQDA-SEPISVVSA-APYYSSYPSITDCV------KSRLYK-------WAGDAKRFN-KDGP 230 (456)
Q Consensus 167 ~~t~G~~~al~~~~~~l~~~gd-~~~~~Vlv~-~P~y~~~~~~~~~~------g~~~~~-------~~~d~~~l~-~~~~ 230 (456)
++|+|+++++++++++++.+|| ....+|+++ +|+|+.+...+... +..+.. +.+|.+.++ ..++
T Consensus 102 ~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 181 (417)
T 3g7q_A 102 ALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLHIGEET 181 (417)
T ss_dssp EEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCCCCTTE
T ss_pred EEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhccccCc
Confidence 9999999999999999998875 222268886 99999998765322 333333 235666665 2357
Q ss_pred eEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCC----CCCCC-CCCCCCcEEEecCccccCCCCceEEE
Q 012785 231 YIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWP----QYTSI-TYPADHDLMLFTVSKSTGHAGTRIGW 297 (456)
Q Consensus 231 ~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~----~~~~~-~~~~~~~i~i~S~SK~~g~~G~RiG~ 297 (456)
+++++++||||||.+++. +|+++|+++|+||+|..+ .+.+. +...+++++++|||| ++++|+|+||
T Consensus 182 ~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK-~~~~G~r~G~ 260 (417)
T 3g7q_A 182 GMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSK-LGLPGSRCGI 260 (417)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESGG-GTCTTSCCEE
T ss_pred eEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccccCCCCCEEEEEechh-ccCCCcceEE
Confidence 899999999999999882 789999999999999852 11121 234578999999999 6889999999
Q ss_pred EEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHH-HHHHHHHHHHHHHHHHHh-cCC--
Q 012785 298 ALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEF-TNHQMSTRWKQLRMAVQK-SGL-- 373 (456)
Q Consensus 298 l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~l~~~L~~-~~~-- 373 (456)
++++ +++++.+.......+++++++.|.++..+++ +. .+.+++.+ +++.++++++.+.+.|.+ ++.
T Consensus 261 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 330 (417)
T 3g7q_A 261 IIAN-DKTITAIANMNGIISLAPGGMGPAMMCEMIK---RN------DLLRLSETVIKPFYYQRVQQTIAIIRRYLSEER 330 (417)
T ss_dssp EECC-HHHHHHHHHHHHHHCCCCCSHHHHHHHHHHH---TT------CHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTT
T ss_pred EEeC-HHHHHHHHHhhcceeeCCCcHHHHHHHHHHc---Cc------chHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 9996 9999999998888889999999999999998 33 13455555 788899999999999987 342
Q ss_pred ccccCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCCCCC--------CCeEEEEecCChh
Q 012785 374 FSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHFGFS--------PKYVRISMLDRDE 442 (456)
Q Consensus 374 ~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~fg~~--------~~~iRis~~~~~e 442 (456)
+.+..+.+++ |+|++++. +.+.+.+.|.++||.++||+.|+.+ ++++||+++.+++
T Consensus 331 ~~~~~~~~g~-------------~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~~~~ 397 (417)
T 3g7q_A 331 CLIHKPEGAI-------------FLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVPEPD 397 (417)
T ss_dssp CEEECCCBSS-------------EEEEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCSCHH
T ss_pred ceeeCCCcce-------------EEEEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecCCHH
Confidence 5566666666 89999864 5677888889999999999999642 5799999988999
Q ss_pred HHHHHHHHHHhhh
Q 012785 443 NYNLFVQRLSKIL 455 (456)
Q Consensus 443 ~i~~~l~~L~~~l 455 (456)
++++++++|++++
T Consensus 398 ~i~~~~~~l~~~l 410 (417)
T 3g7q_A 398 KIEAGVKILAEEI 410 (417)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999876
No 33
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=1.5e-38 Score=318.49 Aligned_cols=321 Identities=21% Similarity=0.233 Sum_probs=257.1
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.++.+|||+.|+|+++.++.+.+... ..+... ...|++..| ..+||++++++++. +|.... +++|++|+
T Consensus 39 ~g~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~---~~~y~~~~g-----~~~lr~~la~~~~~~~g~~~~-~~~v~~~~ 108 (389)
T 1o4s_A 39 KGEDVINLTAGEPDFPTPEPVVEEAV-RFLQKG---EVKYTDPRG-----IYELREGIAKRIGERYKKDIS-PDQVVVTN 108 (389)
T ss_dssp TTCCCEECCCSSCSSCCCHHHHHHHH-HHHTTC---CCCCCCTTC-----CHHHHHHHHHHHHHHHTCCCC-GGGEEEES
T ss_pred cCCCEEEccCCCCCCCCCHHHHHHHH-HHHhcC---CCCCCCCCC-----CHHHHHHHHHHHHHHhCCCCC-HHHEEEec
Confidence 46788999999998766555544322 122222 235877777 59999999999964 465544 57999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc--------ccccc---CCCeEEEEcCCC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA--------KRFNK---DGPYIELVTSPN 239 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~--------~~l~~---~~~~~i~v~~P~ 239 (456)
|+++++.+++++++.+|| +|++++|+|+.+...++..|.+++.++.+. +.++. .+++++++++||
T Consensus 109 g~t~al~~~~~~l~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~ 184 (389)
T 1o4s_A 109 GAKQALFNAFMALLDPGD----EVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPN 184 (389)
T ss_dssp HHHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSC
T ss_pred CHHHHHHHHHHHhCCCCC----EEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcCCC
Confidence 999999999999999999 999999999999999999999998777653 33332 257889999999
Q ss_pred CCCcccch--------HHhhhcCcEEEeeecCCCCCCC----CCC--C-CCCCcEEEecCccccCCCCceEEEEEEeCHH
Q 012785 240 NPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT----SIT--Y-PADHDLMLFTVSKSTGHAGTRIGWALVKDME 304 (456)
Q Consensus 240 NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~----~~~--~-~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~ 304 (456)
||||.+++ ++|+++|+++|+||+|.+..+. ++. . ..+++++++||||.+|++|+|+||++++ ++
T Consensus 185 nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~-~~ 263 (389)
T 1o4s_A 185 NPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISS-EK 263 (389)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECC-HH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEeC-HH
Confidence 99999976 2788999999999999864332 111 1 2578999999999999999999999996 89
Q ss_pred HHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccc
Q 012785 305 VAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFC 384 (456)
Q Consensus 305 ~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~ 384 (456)
+++.+.......+++++++.|.++.++|+ ++ +++.++.++++++.+.+.|+++ ++.+..+.+++
T Consensus 264 ~~~~l~~~~~~~~~~~~~~~~~a~~~~l~---~~-----------~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~- 327 (389)
T 1o4s_A 264 VATAVSKIQSHTTSCINTVAQYAALKALE---VD-----------NSYMVQTFKERKNFVVERLKKM-GVKFVEPEGAF- 327 (389)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHHHHHTT---CC-----------CHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSBSS-
T ss_pred HHHHHHHHhhhcccCCCHHHHHHHHHHHh---cc-----------HHHHHHHHHHHHHHHHHHHHhc-CCeeecCCcce-
Confidence 99999888776778899999999988886 21 5677888999999999999987 46666666666
Q ss_pred ccccccCCCCCceEEeecCccHHHHHHHHH-hCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 385 TFLGRAFEPQPAFAWLKCEQEIEDCESFLK-GNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 385 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~-~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+|++++.+.+.+.+.|. ++||.++||..|+. ++++||+++.+++++++++++|+++++
T Consensus 328 ------------~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~-~~~~Ris~~~~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 328 ------------YLFFKVRGDDVKFCERLLEEKKVALVPGSAFLK-PGFVRLSFATSIERLTEALDRIEDFLN 387 (389)
T ss_dssp ------------EEEEECSSCHHHHHHHHHHHHCEECEEGGGGTC-TTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred ------------EEEEeCCCCHHHHHHHHHHHCCEEEeCchhcCC-CCeEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 789888634556666665 89999999999975 579999998899999999999998764
No 34
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=100.00 E-value=2.6e-38 Score=313.44 Aligned_cols=311 Identities=19% Similarity=0.232 Sum_probs=252.3
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCH
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGS 172 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~ 172 (456)
.+++|||+.|+|++++++.+.+... .......+|++. | ..+||++++++++. ++++|++|+|+
T Consensus 31 ~~~~i~l~~~~~~~~~~~~v~~a~~-----~~~~~~~~y~~~-~-----~~~lr~~la~~~~~------~~~~v~~~~g~ 93 (363)
T 3ffh_A 31 LTKITKLSSNENPLGTSKKVAAIQA-----NSSVETEIYPDG-W-----ASSLRKEVADFYQL------EEEELIFTAGV 93 (363)
T ss_dssp CSCCEECSSCSCTTCCCHHHHHHHH-----TCBSCCCBC----------CHHHHHHHHHHHTC------CGGGEEEESSH
T ss_pred CCceEEccCCCCCCCCCHHHHHHHH-----HHHHHhhcCCCc-c-----hHHHHHHHHHHhCC------ChhhEEEeCCH
Confidence 4578999999999887766654322 111223457654 5 59999999999963 45799999999
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC------cccccc---CCCeEEEEcCCCCCCc
Q 012785 173 TQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD------AKRFNK---DGPYIELVTSPNNPDG 243 (456)
Q Consensus 173 ~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d------~~~l~~---~~~~~i~v~~P~NPtG 243 (456)
+++++++++++.++|| +|++++|+|+.+...++..|.+++.++.+ .+.++. .+++++++++||||||
T Consensus 94 t~a~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG 169 (363)
T 3ffh_A 94 DELIELLTRVLLDTTT----NTVMATPTFVQYRQNALIEGAEVREIPLLQDGEHDLEGMLNAIDEKTTIVWICNPNNPTG 169 (363)
T ss_dssp HHHHHHHHHHHCSTTC----EEEEEESSCHHHHHHHHHHTCEEEEEECCTTSCCCHHHHHHHCCTTEEEEEEESSCTTTC
T ss_pred HHHHHHHHHHHccCCC----EEEEcCCChHHHHHHHHHcCCEEEEecCCCCCCcCHHHHHHhcccCCCEEEEeCCCCCcC
Confidence 9999999999999999 99999999999999999999999887764 344432 3678999999999999
Q ss_pred ccchH-----Hhhhc--CcEEEeeecCCCCCC---CC---CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHH
Q 012785 244 SVRQS-----VVNRS--GGILVHDLAYYWPQY---TS---ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMT 310 (456)
Q Consensus 244 ~~~~~-----l~~~~--~~~iI~De~y~~~~~---~~---~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~ 310 (456)
.+++. +++.. |+++|+||+|.+..+ .+ .....+++++++||||.+|++|+|+||++++ +++++.+.
T Consensus 170 ~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~l~ 248 (363)
T 3ffh_A 170 NYIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIAD-KEIIRQLN 248 (363)
T ss_dssp CCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEEC-HHHHHHHH
T ss_pred CCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecC-HHHHHHHH
Confidence 99882 55555 999999999984322 11 1234678999999999999999999999995 99999998
Q ss_pred HHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccccccc
Q 012785 311 KYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRA 390 (456)
Q Consensus 311 ~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~ 390 (456)
.... +++++.+.|.++.++|+ + .+++++.+++++++++.+.+.|+++.++.+.++
T Consensus 249 ~~~~--~~~~~~~~~~~~~~~l~---~---------~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~----------- 303 (363)
T 3ffh_A 249 IVRP--PFNTTSIGQKLAIEAIK---D---------QAFIGECRTSNANGIKQYEAFAKRFEKVKLYPA----------- 303 (363)
T ss_dssp HTCC--SCCCBHHHHHHHHHHHH---C---------HHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCC-----------
T ss_pred HhCC--CCCCCHHHHHHHHHHhc---C---------HHHHHHHHHHHHHHHHHHHHHHhhCCCceECCC-----------
Confidence 8765 78899999999999997 2 468889999999999999999998544544433
Q ss_pred CCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 391 FEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 391 ~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
.++|+|++++.+.+.+.+.|.++||.++||..|+. ++++||+++ +++++++++++|++++
T Consensus 304 ---~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~-~~~iRis~~-~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 304 ---NGNFVLIDLGIEAGTIFSYLEKNGYITRSGAALGF-PTAVRITIG-KEEDNSAVIALLEKLL 363 (363)
T ss_dssp ---CSSEEEEECSSCHHHHHHHHHHTTEECEETTTTTC-TTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred ---CCeEEEEECCCCHHHHHHHHHHCCeEEEeCccCCC-CCeEEEECC-CHHHHHHHHHHHHHhC
Confidence 33489999976677788888899999999999986 889999996 8899999999999874
No 35
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=100.00 E-value=1.9e-38 Score=317.17 Aligned_cols=324 Identities=13% Similarity=0.112 Sum_probs=262.6
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.++++|||+.|+|+++.++.+.+... ..+... ...|++.. .++++++++++.. +|.... +++|++|+
T Consensus 25 ~g~~~i~~~~~~~~~~~~~~v~~a~~-~~~~~~---~~~y~~~~-------~~l~~~la~~l~~~~g~~~~-~~~i~~~~ 92 (391)
T 3dzz_A 25 LKEKELPMWIAEMDFKIAPEIMASME-EKLKVA---AFGYESVP-------AEYYKAVADWEEIEHRARPK-EDWCVFAS 92 (391)
T ss_dssp CCTTCEECCSSCCSSCCCHHHHHHHH-HHHTTC---CCCCBCCC-------HHHHHHHHHHHHHHHSCCCC-GGGEEEES
T ss_pred cCCCceeccccCCCCCCCHHHHHHHH-HHHhcC---cCCCCCCC-------HHHHHHHHHHHHHHhCCCCC-HHHEEECC
Confidence 45689999999999988776665422 122222 23466643 8999999999954 565554 57999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc---------Ccccccc----CCCeEEEEcC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG---------DAKRFNK----DGPYIELVTS 237 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~---------d~~~l~~----~~~~~i~v~~ 237 (456)
|++++++++++++.++|| +|+++.|+|+.+...++..|.+++.++. |.+.++. .++++|++++
T Consensus 93 g~~~a~~~~~~~l~~~gd----~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~ 168 (391)
T 3dzz_A 93 GVVPAISAMVRQFTSPGD----QILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCN 168 (391)
T ss_dssp CHHHHHHHHHHHHSCTTC----EEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEES
T ss_pred CHHHHHHHHHHHhCCCCC----eEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEEC
Confidence 999999999999999999 9999999999999999999999887665 3333332 4678999999
Q ss_pred CCCCCcccch--------HHhhhcCcEEEeeecCCCCCCC-----CCCC----CCCCcEEEecCccccCCCCceEEEEEE
Q 012785 238 PNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT-----SITY----PADHDLMLFTVSKSTGHAGTRIGWALV 300 (456)
Q Consensus 238 P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~-----~~~~----~~~~~i~i~S~SK~~g~~G~RiG~l~~ 300 (456)
||||||.+++ ++|+++|+++|+||+|.+..+. ++.. ..+++++++|+||.+|++|+|+||+++
T Consensus 169 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~ 248 (391)
T 3dzz_A 169 PHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAII 248 (391)
T ss_dssp SBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEEC
T ss_pred CCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEE
Confidence 9999999976 2789999999999999853222 2211 146789999999999999999999999
Q ss_pred eCHHHHHHHHHHHh-hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh-cCCccccC
Q 012785 301 KDMEVAKKMTKYIE-LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK-SGLFSVPE 378 (456)
Q Consensus 301 ~~~~~~~~l~~~~~-~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~ 378 (456)
+++++++.+..... ...++++++.|.++.++|+. . ++++++.++.++++++.+.+.|++ ++++.+..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~--------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 317 (391)
T 3dzz_A 249 PNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEE---G--------HDWLRELKQVLRDNFAYAREFLAKEVPEVKVLD 317 (391)
T ss_dssp CSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHH---C--------HHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECC
T ss_pred CCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhc---c--------HHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEec
Confidence 76899999988754 34568899999999998873 2 578899999999999999999998 67777777
Q ss_pred CCCcccccccccCCCCCceEEeecCc---cHHHHHHHH-HhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHh
Q 012785 379 LPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFL-KGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSK 453 (456)
Q Consensus 379 ~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l-~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~ 453 (456)
+.+++ ++|++++. +.+.+.+.| +++||.++||..|+. +++++||+++.+++++++++++|++
T Consensus 318 ~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~ 384 (391)
T 3dzz_A 318 SNASY-------------LAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLACPKELVIDGMQRLKQ 384 (391)
T ss_dssp CCBSS-------------EEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCSCHHHHHHHHHHHHH
T ss_pred cCceE-------------EEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHH
Confidence 77776 78898863 566677777 589999999999975 4689999998899999999999998
Q ss_pred hh
Q 012785 454 IL 455 (456)
Q Consensus 454 ~l 455 (456)
++
T Consensus 385 ~l 386 (391)
T 3dzz_A 385 GV 386 (391)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 36
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=100.00 E-value=2.6e-38 Score=320.74 Aligned_cols=331 Identities=14% Similarity=0.188 Sum_probs=260.6
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCc-eEEEccC
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENH-HIVVGTG 171 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~-~I~~t~G 171 (456)
.++|||+.|.|+++.++.+.+... ..+.........|++..| .++|++++++++.. +|.... ++ +|++|+|
T Consensus 37 ~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~~~~~~~y~~~~g-----~~~l~~~la~~l~~~~g~~~~-~~~~v~~~~g 109 (429)
T 1yiz_A 37 YKPLNLGQGFPDYHAPKYALNALA-AAANSPDPLANQYTRGFG-----HPRLVQALSKLYSQLVDRTIN-PMTEVLVTVG 109 (429)
T ss_dssp HCCEECCSSSCSSCCCHHHHHHHH-HHHTCSCGGGGSCCCSSC-----CHHHHHHHHHHHHHHHTSCCC-TTTSEEEESH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHH-HHHhccccCccCCCCCCC-----cHHHHHHHHHHHHHHhCCCCC-CcCCEEEecC
Confidence 468999999998766655554322 112221112346887777 59999999999854 465543 56 8999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc----------------ccccc---CCCeE
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA----------------KRFNK---DGPYI 232 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~----------------~~l~~---~~~~~ 232 (456)
+++++.+++++++.+|| +|+++.|+|+.+...++..|.+++.++.+. +.++. .++++
T Consensus 110 ~~~a~~~~~~~~~~~gd----~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 185 (429)
T 1yiz_A 110 AYEALYATIQGHVDEGD----EVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKM 185 (429)
T ss_dssp HHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTEEE
T ss_pred hHHHHHHHHHHhcCCCC----EEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhccCceE
Confidence 99999999999999999 999999999999999999999988776543 33322 36789
Q ss_pred EEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCC-----CCCC---CCCCCcEEEecCccccCCCCceEE
Q 012785 233 ELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQY-----TSIT---YPADHDLMLFTVSKSTGHAGTRIG 296 (456)
Q Consensus 233 i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~-----~~~~---~~~~~~i~i~S~SK~~g~~G~RiG 296 (456)
+++++||||||.+++ ++|+++|+++|+||+|.+..+ .++. ...+++++++||||.+|++|+|+|
T Consensus 186 v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G 265 (429)
T 1yiz_A 186 IIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIG 265 (429)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCE
T ss_pred EEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcceE
Confidence 999999999999986 278999999999999986322 2222 134679999999999999999999
Q ss_pred EEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhC--CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 012785 297 WALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSD--SCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLF 374 (456)
Q Consensus 297 ~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~ 374 (456)
|++++ +++++.+.......+++++++.|.++.++|+.... + ..++++++.++.++++++.+.+.|++++ +
T Consensus 266 ~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~ 337 (429)
T 1yiz_A 266 WAYGP-EALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLK------SPECYFNSISGELMAKRDYMASFLAEVG-M 337 (429)
T ss_dssp EEESC-HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTT------STTSHHHHHHHHHHHHHHHHHHHHHHHT-C
T ss_pred EEEeC-HHHHHHHHHHHhhcccCCChHHHHHHHHHHhccccccc------chHHHHHHHHHHHHHHHHHHHHHHHhCC-C
Confidence 99997 99999998887777889999999999999984100 2 1256889999999999999999999874 5
Q ss_pred cccCCCCcccccccccCCCCCceEEeecCc--------------cHHHHHHHH-HhCCEEeecCCCCCC------CCCeE
Q 012785 375 SVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--------------EIEDCESFL-KGNKILTRSGKHFGF------SPKYV 433 (456)
Q Consensus 375 ~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--------------~~~~~~~~l-~~~gI~v~pg~~fg~------~~~~i 433 (456)
.+..+.+++ |+|++++. +...+.+.| +++||.++||..|+. .++++
T Consensus 338 ~~~~~~~g~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~i 404 (429)
T 1yiz_A 338 NPTVPQGGY-------------FMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFV 404 (429)
T ss_dssp EEEECSBSS-------------EEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEE
T ss_pred cccCCCcce-------------EEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeE
Confidence 665666666 89998863 234555555 589999999998863 26899
Q ss_pred EEEecCChhHHHHHHHHHHhhhC
Q 012785 434 RISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 434 Ris~~~~~e~i~~~l~~L~~~l~ 456 (456)
||+++.+++++++++++|+++++
T Consensus 405 Ris~~~~~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 405 RYCFFKKDENLQKAAEILRKWKG 427 (429)
T ss_dssp EEECCSCHHHHHHHHHHHHHHSC
T ss_pred EEEecCCHHHHHHHHHHHHHhcc
Confidence 99998899999999999998864
No 37
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=100.00 E-value=1.1e-38 Score=314.65 Aligned_cols=311 Identities=17% Similarity=0.221 Sum_probs=243.9
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccC
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTG 171 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G 171 (456)
.++.+|||+.++|++++++.+.+... ..+ .....|+++.+ ++||+++|++++. ++++|++|+|
T Consensus 13 ~g~~~id~~~~~~~~~~~~~v~~a~~-~~~----~~~~~y~~~~~------~~lr~~la~~~~~------~~~~i~~t~g 75 (350)
T 3fkd_A 13 LSSEIVNFSTTVWTDGDKDHLEKHLV-ENL----NCIRHYPEPDA------GTLRQMLAKRNSV------DNNAILVTNG 75 (350)
T ss_dssp ---CCEECSCCSCCCSCCHHHHHHHH-HTG----GGGGSCCCTTC------HHHHHHHHHHTTC------CGGGEEEESH
T ss_pred ccccEEEccCCCCCCCCCHHHHHHHH-HhH----hHHhcCCCCcH------HHHHHHHHHHhCc------CHHHEEEcCC
Confidence 34688999999998887766654322 112 22346887775 8999999999853 4579999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-Cc-cccccCCCeEEEEcCCCCCCcccchH-
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-DA-KRFNKDGPYIELVTSPNNPDGSVRQS- 248 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d~-~~l~~~~~~~i~v~~P~NPtG~~~~~- 248 (456)
++++++++++++. || +|+++.|+|+.+...++..|++++.++. |. +++...+++++++++||||||.+++.
T Consensus 76 ~~~al~~~~~~l~--gd----~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~v~i~~p~nptG~~~~~~ 149 (350)
T 3fkd_A 76 PTAAFYQIAQAFR--GS----RSLIAIPSFAEYEDACRMYEHEVCFYPSNEDIGEADFSNMDFCWLCNPNNPDGRLLQRT 149 (350)
T ss_dssp HHHHHHHHHHHTT--TC----EEEEEESCCHHHHHHHHHTTCEEEEEETTSCGGGSCCTTCSEEEEESSCTTTCCCCCHH
T ss_pred HHHHHHHHHHHHC--CC----EEEEeCCCcHHHHHHHHHcCCeEEEEecCCccccCccCCCCEEEEeCCCCCcCCCCCHH
Confidence 9999999999987 88 9999999999999999999999999988 65 56666678999999999999999883
Q ss_pred ----HhhhcC-cEEEeeecCCCCCCCC-----CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccC
Q 012785 249 ----VVNRSG-GILVHDLAYYWPQYTS-----ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTI 318 (456)
Q Consensus 249 ----l~~~~~-~~iI~De~y~~~~~~~-----~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~ 318 (456)
+++..+ .++|+||+|.+..+.+ .....+++++++||||.+|++|+|+||++++ +++++.+..... ++
T Consensus 150 ~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~-~~~~~~~~~~~~--~~ 226 (350)
T 3fkd_A 150 EILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVAN-KDFMKRVAAFST--PW 226 (350)
T ss_dssp HHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECC-HHHHHHHHTTCC--TT
T ss_pred HHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeC-HHHHHHHHHhCC--CC
Confidence 565543 5999999998643322 1134578999999999999999999999995 999999987764 67
Q ss_pred cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceE
Q 012785 319 GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFA 398 (456)
Q Consensus 319 ~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~ 398 (456)
+++++.|.++.++|+ +. +++.++.++.. ++++.+.+.|++++++.+.++ .++|+
T Consensus 227 ~~~~~~~~~~~~~l~---~~--------~~~~~~~~~~~-~~~~~l~~~L~~~~~~~~~~~--------------~~~~~ 280 (350)
T 3fkd_A 227 AVNALAIEAAKFILI---HP--------AQFTLPIRKWQ-RNTVDFITALNRLDGVEVHPS--------------GTTFF 280 (350)
T ss_dssp CSCHHHHHHHHHHHH---CT--------TTTCCCHHHHH-HHHHHHHHHHHHSTTEEECCC--------------SSSEE
T ss_pred CCCHHHHHHHHHHHh---CH--------HHHHHHHHHHH-HHHHHHHHHHhcCCCcEECCC--------------CCcEE
Confidence 899999999999998 32 12333344444 888899999988765555433 33478
Q ss_pred EeecCc-cHHHHHHHHHh-CCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 399 WLKCEQ-EIEDCESFLKG-NKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 399 ~~~~~~-~~~~~~~~l~~-~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|++++. +.+.+.+.|.+ +||.++||+.|+. .++++||+++ ++++++++++.|++++
T Consensus 281 ~~~~~~~~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~~ 339 (350)
T 3fkd_A 281 LLRLKKGTAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ-RPAQNQLFIKALETFL 339 (350)
T ss_dssp EEEESSSCHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHH
Confidence 888865 56677777777 9999999999964 5789999995 7778888888888775
No 38
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=1.1e-37 Score=314.34 Aligned_cols=324 Identities=15% Similarity=0.242 Sum_probs=259.4
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEc
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVG 169 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t 169 (456)
..++.+|+|+.|+|+++.++.+.+.. ..+..+ ...|++..| ..+|+++++++++. +|.... +++|++|
T Consensus 40 ~~g~~~i~l~~~~~~~~~~~~v~~a~--~~l~~~---~~~y~~~~g-----~~~l~~~la~~~~~~~g~~~~-~~~v~~~ 108 (409)
T 2gb3_A 40 KRGVRIHHLNIGQPDLKTPEVFFERI--YENKPE---VVYYSHSAG-----IWELREAFASYYKRRQRVDVK-PENVLVT 108 (409)
T ss_dssp HTTCEEEECSSCCCCSCCCTHHHHHH--HHTCCS---SCCCCCTTC-----CHHHHHHHHHHHHHTSCCCCC-GGGEEEE
T ss_pred hcCCCEEeccCCCCCCCCCHHHHHHH--HHHhcC---CCCCCCCCC-----cHHHHHHHHHHHHHHhCCCCC-HHHEEEe
Confidence 35678999999999876655554432 222222 235877777 59999999999975 455544 5799999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-------ccccc---CCCeEEEEcCCC
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-------KRFNK---DGPYIELVTSPN 239 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-------~~l~~---~~~~~i~v~~P~ 239 (456)
+|+++++.++++++.++|| +|++++|+|+.+...++..|.+++.++.+. +.++. .+++++++++||
T Consensus 109 ~g~t~a~~~~~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~l~~~~~~v~~~~p~ 184 (409)
T 2gb3_A 109 NGGSEAILFSFAVIANPGD----EILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPC 184 (409)
T ss_dssp SHHHHHHHHHHHHHCCTTC----EEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESSC
T ss_pred CCHHHHHHHHHHHhCCCCC----EEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCccHHHHHHhhCcCCeEEEECCCC
Confidence 9999999999999999999 999999999999999999999998887653 33332 257889999999
Q ss_pred CCCcccch--------HHhhhcCcEEEeeecCCCCCC----CC-CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHH
Q 012785 240 NPDGSVRQ--------SVVNRSGGILVHDLAYYWPQY----TS-ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVA 306 (456)
Q Consensus 240 NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~----~~-~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~ 306 (456)
||||.+++ ++|+++|+++|+||+|.+..+ .+ +....+++++++||||.+|++|+|+||+++++++++
T Consensus 185 nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~l~ 264 (409)
T 2gb3_A 185 NPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELI 264 (409)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCCCEEEEecchhccCCccceEEEEEECcHHHH
Confidence 99999976 278899999999999986432 12 222246799999999999999999999999843899
Q ss_pred HHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccc-cCCCCcccc
Q 012785 307 KKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSV-PELPSQFCT 385 (456)
Q Consensus 307 ~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~g~~~~ 385 (456)
+.+.......+ +++++.|.++.++|+ .+ ++++++.++.++++++.+.+.|++. ++.+ ..+.+++
T Consensus 265 ~~l~~~~~~~~-~~~~~~~~a~~~~l~---~~--------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~-- 329 (409)
T 2gb3_A 265 SHAMKLAQGRL-APPLLEQIGSVGLLN---LD--------DSFFDFVRETYRERVETVLKKLEEH-GLKRFTKPSGAF-- 329 (409)
T ss_dssp HHHHHHHHHSC-CCCHHHHHHHHHHHT---CC--------HHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBCCCSBSS--
T ss_pred HHHHHHHhccC-CCCHHHHHHHHHHHh---cc--------HHHHHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCeeE--
Confidence 99988776555 899999999999886 22 5788899999999999999999987 4555 5566666
Q ss_pred cccccCCCCCceEEeecC-ccHHHHHHHHHhC------CEEeecCCCCCC----CCCeEEEEecCChhHHHHHHHHHHhh
Q 012785 386 FLGRAFEPQPAFAWLKCE-QEIEDCESFLKGN------KILTRSGKHFGF----SPKYVRISMLDRDENYNLFVQRLSKI 454 (456)
Q Consensus 386 ~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~------gI~v~pg~~fg~----~~~~iRis~~~~~e~i~~~l~~L~~~ 454 (456)
|+|++++ .+...+.+.|.++ ||.++||..|+. +++++||+++.+++++++++++|+++
T Consensus 330 -----------~~~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~ 398 (409)
T 2gb3_A 330 -----------YITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEG 398 (409)
T ss_dssp -----------EEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHH
T ss_pred -----------EEEEEeCCCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHH
Confidence 8898885 3456666666655 999999999964 37899999988899999999999987
Q ss_pred h
Q 012785 455 L 455 (456)
Q Consensus 455 l 455 (456)
+
T Consensus 399 l 399 (409)
T 2gb3_A 399 L 399 (409)
T ss_dssp H
T ss_pred H
Confidence 5
No 39
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.3e-38 Score=319.48 Aligned_cols=324 Identities=15% Similarity=0.218 Sum_probs=258.1
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCc-eEEEcc
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENH-HIVVGT 170 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~-~I~~t~ 170 (456)
..+.|||+.|+|+++.++.+.+... ..+..+ ...|++..| .++|++++++++.. +|.... ++ +|++|+
T Consensus 24 ~~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~---~~~y~~~~g-----~~~l~~~la~~~~~~~g~~~~-~~~~v~~t~ 93 (411)
T 2o0r_A 24 RIGAVNLGQGFPDEDGPPKMLQAAQ-DAIAGG---VNQYPPGPG-----SAPLRRAIAAQRRRHFGVDYD-PETEVLVTV 93 (411)
T ss_dssp TTTCEESSCSSCSSCCCHHHHHHHH-HHHHTT---CCSCCCTTC-----CHHHHHHHHHHHHHHHCCCCC-TTTSEEEEE
T ss_pred cCCeeeccCcCCCCCCCHHHHHHHH-HHHhcC---CCCCCCCCC-----CHHHHHHHHHHHHHHcCCCCC-CCceEEEeC
Confidence 3468999999998766555544322 122221 346888777 59999999999964 465554 45 899999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC---------cccccc---CCCeEEEEcCC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD---------AKRFNK---DGPYIELVTSP 238 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d---------~~~l~~---~~~~~i~v~~P 238 (456)
|+++++.+++++++++|| +|++++|+|+.+...++..|.+++.++.+ .+.++. .++++|++++|
T Consensus 94 g~~~al~~~~~~~~~~gd----~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~~ 169 (411)
T 2o0r_A 94 GATEAIAAAVLGLVEPGS----EVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSP 169 (411)
T ss_dssp HHHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEESS
T ss_pred CHHHHHHHHHHHhcCCCC----EEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeCC
Confidence 999999999999999999 99999999999999999999998876643 334432 36789999999
Q ss_pred CCCCcccch--------HHhhhcCcEEEeeecCCCCCCC-----CCCC---CCCCcEEEecCccccCCCCceEEEEEEeC
Q 012785 239 NNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT-----SITY---PADHDLMLFTVSKSTGHAGTRIGWALVKD 302 (456)
Q Consensus 239 ~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~-----~~~~---~~~~~i~i~S~SK~~g~~G~RiG~l~~~~ 302 (456)
|||||.+++ ++|+++|+++|+||+|.+..+. ++.. ..+++++++||||.+|++|+|+||++++
T Consensus 170 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~- 248 (411)
T 2o0r_A 170 HNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGP- 248 (411)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEeeC-
Confidence 999999986 2788999999999999864321 2211 2467999999999999999999999996
Q ss_pred HHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCc
Q 012785 303 MEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQ 382 (456)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~ 382 (456)
+++++.+.......+++.+++.|.++.++|+. . ++++++.++.++++++.+.+.|++. ++.+..+.++
T Consensus 249 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~--------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g 316 (411)
T 2o0r_A 249 AELIAGVRAAKQYLSYVGGAPFQPAVALALDT---E--------DAWVAALRNSLRARRDRLAAGLTEI-GFAVHDSYGT 316 (411)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHH---C--------HHHHHHHHHHHHHHHHHHHHHHHHH-TCEECCCCBS
T ss_pred HHHHHHHHHHHhhccCCCChHHHHHHHHHHhC---C--------hHHHHHHHHHHHHHHHHHHHHHHHc-CCEecCCCee
Confidence 99999998887767788899999999998872 2 5688899999999999999999887 3666666666
Q ss_pred ccccccccCCCCCceEEeecCc----cHHHHHHHH-HhCCEEeecCCCC-CC-----------CCCeEEEEecCChhHHH
Q 012785 383 FCTFLGRAFEPQPAFAWLKCEQ----EIEDCESFL-KGNKILTRSGKHF-GF-----------SPKYVRISMLDRDENYN 445 (456)
Q Consensus 383 ~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l-~~~gI~v~pg~~f-g~-----------~~~~iRis~~~~~e~i~ 445 (456)
+ |+|++++. +...+.+.| +++||.++||..| +. .++++||+++.++++++
T Consensus 317 ~-------------~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~ 383 (411)
T 2o0r_A 317 Y-------------FLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLD 383 (411)
T ss_dssp S-------------EEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCSCHHHHH
T ss_pred E-------------EEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecCCHHHHH
Confidence 6 89999863 345555544 5789999999988 32 35789999987899999
Q ss_pred HHHHHHHhhhC
Q 012785 446 LFVQRLSKILS 456 (456)
Q Consensus 446 ~~l~~L~~~l~ 456 (456)
+++++|+++++
T Consensus 384 ~~~~~l~~~~~ 394 (411)
T 2o0r_A 384 EAIRRLSVLAE 394 (411)
T ss_dssp HHHHHHGGGGC
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 40
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=100.00 E-value=9.5e-38 Score=309.27 Aligned_cols=315 Identities=17% Similarity=0.195 Sum_probs=253.4
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccC
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTG 171 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G 171 (456)
.++.+|||+.++|++++++.+.+... ..+..+......|++.. ..+||++++++++. ++++|++|+|
T Consensus 24 ~~~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~~~~~~~y~~~~------~~~lr~~la~~~g~------~~~~i~~t~g 90 (360)
T 3hdo_A 24 DIASWIKLNTNENPYPPSPEVVKAIL-EELGPDGAALRIYPSAS------SQKLREVAGELYGF------DPSWIIMANG 90 (360)
T ss_dssp CCTTSEECSSCCCSSCCCHHHHHHHH-HHHTTTCGGGGSCCCSS------CHHHHHHHHHHHTC------CGGGEEEESS
T ss_pred cccceeeccCCCCCCCCCHHHHHHHH-HHHhcccchhhcCCCCc------hHHHHHHHHHHhCc------CcceEEEcCC
Confidence 34678999999999988776665422 22222211134577654 49999999999962 4579999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc----cccc-CCCeEEEEcCCCCCCcccc
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK----RFNK-DGPYIELVTSPNNPDGSVR 246 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~----~l~~-~~~~~i~v~~P~NPtG~~~ 246 (456)
+++++++++++++++|| +|+++.|+|+.+...++..|.+++.++.|.+ .+.. .+++++++++||||||.++
T Consensus 91 ~~~al~~~~~~l~~~gd----~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~v~i~~p~nptG~~~ 166 (360)
T 3hdo_A 91 SDEVLNNLIRAFAAEGE----EIGYVHPSYSYYGTLAEVQGARVRTFGLTGDFRIAGFPERYEGKVFFLTTPNAPLGPSF 166 (360)
T ss_dssp HHHHHHHHHHHHCCTTC----EEEEESSSCTHHHHHHHHHTCEEEEECBCTTSSBTTCCSSBCSSEEEEESSCTTTCCCC
T ss_pred HHHHHHHHHHHHhCCCC----EEEEcCCChHHHHHHHHHCCCEEEEeeCCCCCCHHHHHhhcCCCEEEEeCCCCCCCCCc
Confidence 99999999999999999 9999999999999999999999998876543 2222 2567999999999999998
Q ss_pred h-----HHhhhcCcEEEeeecCCCCCCCC---CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccC
Q 012785 247 Q-----SVVNRSGGILVHDLAYYWPQYTS---ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTI 318 (456)
Q Consensus 247 ~-----~l~~~~~~~iI~De~y~~~~~~~---~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~ 318 (456)
+ ++|+++|+++|+||+|.+....+ .....+++++++||||.+|++|+|+||++++ +++++.+..... .+
T Consensus 167 ~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~~~~~~~--~~ 243 (360)
T 3hdo_A 167 PLEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIAR-PEVIAALDKIRD--HY 243 (360)
T ss_dssp CHHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECC-HHHHHHHHHHSC--SC
T ss_pred CHHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccceeeEeeC-HHHHHHHHHhCC--CC
Confidence 8 38999999999999998532111 1133578899999999999999999999995 999999988764 57
Q ss_pred cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceE
Q 012785 319 GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFA 398 (456)
Q Consensus 319 ~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~ 398 (456)
+++++.|.++.++|+. .+++++.++.++++++.+.+.|++++ +.+.++ .++|+
T Consensus 244 ~~~~~~~~a~~~~l~~------------~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~--------------~~~~~ 296 (360)
T 3hdo_A 244 NLDRLAQAACVAALRD------------QAYLSECCRRIRETREWFTTELRSIG-YDVIPS--------------QGNYL 296 (360)
T ss_dssp CSCHHHHHHHHHHHHC------------HHHHHHHHHHHHHHHHHHHHHHHHTT-CEECCC--------------SSSEE
T ss_pred CCCHHHHHHHHHHhcC------------HHHHHHHHHHHHHHHHHHHHHHHHCC-CEEcCC--------------CccEE
Confidence 8999999999999982 46788999999999999999999873 444333 33478
Q ss_pred EeecCc-cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 399 WLKCEQ-EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 399 ~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|++++. +.+.+.+.|.++||.++||..++ .++++||+++ ++++++++++.|+++.
T Consensus 297 ~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~-~~~~iRis~~-~~~e~~~l~~al~~~~ 352 (360)
T 3hdo_A 297 FATPPDRDGKRVYDGLYARKVLVRHFSDPL-LAHGMRISIG-TREEMEQTLAALKEIG 352 (360)
T ss_dssp EEECTTCCHHHHHHHHHHTTEECBCCCSTT-TTTSEEEECC-CHHHHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHCCEEEEECCCCC-CCCEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 888864 56778888999999999987633 4689999995 8899999999999874
No 41
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=100.00 E-value=1.2e-37 Score=311.37 Aligned_cols=324 Identities=12% Similarity=0.140 Sum_probs=259.9
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccC
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTG 171 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G 171 (456)
+.++|+|+.|+|+++.++.+.++.. ..+... ...|++ + ..++++++++++.. +|.... +++|++|+|
T Consensus 31 ~~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~---~~~y~~--~-----~~~~~~~l~~~l~~~~g~~~~-~~~v~~~~g 98 (391)
T 4dq6_A 31 TNDLLPMWVADMDFKAAPCIIDSLK-NRLEQE---IYGYTT--R-----PDSYNESIVNWLYRRHNWKIK-SEWLIYSPG 98 (391)
T ss_dssp CSCSEECCSSSCSSCCCHHHHHHHH-HHHTTC---CCCCBC--C-----CHHHHHHHHHHHHHHHCCCCC-GGGEEEESC
T ss_pred CCCceeccccCCCCCCCHHHHHHHH-HHHhCC---CCCCCC--C-----CHHHHHHHHHHHHHHhCCCCc-HHHeEEcCC
Confidence 4688999999999887776665322 122222 224555 3 38999999999854 565443 579999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC----------cccccc--CCCeEEEEcCCC
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD----------AKRFNK--DGPYIELVTSPN 239 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d----------~~~l~~--~~~~~i~v~~P~ 239 (456)
+++++++++++++++|| +|+++.|+|+.+...++..|.+++.++.+ .+.++. .+++++++++||
T Consensus 99 ~~~a~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~v~i~~p~ 174 (391)
T 4dq6_A 99 VIPAISLLINELTKAND----KIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKDVKLFILCNPH 174 (391)
T ss_dssp HHHHHHHHHHHHSCTTC----EEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTTEEEEEEESSB
T ss_pred hHHHHHHHHHHhCCCCC----EEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhcCCEEEEECCC
Confidence 99999999999999999 99999999999999999999999877654 333322 127899999999
Q ss_pred CCCcccchH--------HhhhcCcEEEeeecCCCCCCC-----CCCCC----CCCcEEEecCccccCCCCceEEEEEEeC
Q 012785 240 NPDGSVRQS--------VVNRSGGILVHDLAYYWPQYT-----SITYP----ADHDLMLFTVSKSTGHAGTRIGWALVKD 302 (456)
Q Consensus 240 NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~-----~~~~~----~~~~i~i~S~SK~~g~~G~RiG~l~~~~ 302 (456)
||||.+++. +|+++|+++|+||+|.+..+. ++... .+++++++||||.+|++|+|+||+++++
T Consensus 175 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~ 254 (391)
T 4dq6_A 175 NPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPD 254 (391)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCS
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCC
Confidence 999999772 789999999999999863322 22211 2578999999999999999999999986
Q ss_pred HHHHHHHHHHHhh-ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh-cCCccccCCC
Q 012785 303 MEVAKKMTKYIEL-NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK-SGLFSVPELP 380 (456)
Q Consensus 303 ~~~~~~l~~~~~~-~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~ 380 (456)
+++++.+...... ...+++++.|.++.++|+. . ++++++.++.++++++.+.+.|++ ++++.+..+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~--------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 323 (391)
T 4dq6_A 255 EKDYKLLDDAFTRIDIKRNNCFSLVATEASYNN---G--------ESWLESFLEYLESNIDFAIKYINENMPKLKVRKPE 323 (391)
T ss_dssp HHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH---C--------HHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCS
T ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhc---h--------HHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCC
Confidence 6899998887543 3457899999999998872 2 577899999999999999999988 5677777777
Q ss_pred CcccccccccCCCCCceEEeecCc---cHHHHHHHHHhC-CEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 381 SQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGN-KILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 381 g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~-gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
+++ ++|++++. +.+.+.+.|.++ ||.++||+.|+. .++++||+++.+++++++++++|++++
T Consensus 324 ~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 324 GTY-------------LLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLACPRSMLEEALIRIKNAI 390 (391)
T ss_dssp BSS-------------EEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred ccE-------------EEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 777 78898863 566777777776 999999999975 578999999889999999999999987
Q ss_pred C
Q 012785 456 S 456 (456)
Q Consensus 456 ~ 456 (456)
+
T Consensus 391 ~ 391 (391)
T 4dq6_A 391 N 391 (391)
T ss_dssp C
T ss_pred C
Confidence 4
No 42
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=1.4e-38 Score=322.58 Aligned_cols=328 Identities=16% Similarity=0.176 Sum_probs=255.9
Q ss_pred CCCeEEecCCCCCCC--chhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHh-cCc-cCCCceEEE
Q 012785 93 GERIINVDHGDPTMY--EKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVV-GNA-ITENHHIVV 168 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~--~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~-g~~-~~~~~~I~~ 168 (456)
++.+|||+.|.|+.. +++.+.+... ..+.........|++..| .++||+++++++... |.. .. +++|++
T Consensus 42 ~~~~idl~~g~~~~~~~~~~~v~~a~~-~~~~~~~~~~~~y~~~~g-----~~~lr~~la~~l~~~~g~~~~~-~~~v~~ 114 (425)
T 1vp4_A 42 DKDAISFGGGVPDPETFPRKELAEIAK-EIIEKEYHYTLQYSTTEG-----DPVLKQQILKLLERMYGITGLD-EDNLIF 114 (425)
T ss_dssp STTCEECCCCSCCGGGSCHHHHHHHHH-HHHHHSHHHHTSCCCTTC-----CHHHHHHHHHHHHHHHCCCSCC-GGGEEE
T ss_pred CCCceeCCCCCCCcccCCHHHHHHHHH-HHHhhcchhhcCCCCCCC-----CHHHHHHHHHHHHhccCCCCCC-cccEEE
Confidence 457899999987642 3333333211 112221111245777777 599999999999654 654 43 579999
Q ss_pred ccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-----Ccccccc-----------CCCeE
Q 012785 169 GTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-----DAKRFNK-----------DGPYI 232 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-----d~~~l~~-----------~~~~~ 232 (456)
|+|+++++++++++++++|| +|++++|+|+.+...++..|.+++.++. |.+.++. .++++
T Consensus 115 t~G~~~al~~~~~~l~~~gd----~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~ 190 (425)
T 1vp4_A 115 TVGSQQALDLIGKLFLDDES----YCVLDDPAYLGAINAFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKF 190 (425)
T ss_dssp EEHHHHHHHHHHHHHCCTTC----EEEEEESCCHHHHHHHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHTTCGGGEEE
T ss_pred eccHHHHHHHHHHHhCCCCC----EEEEeCCCcHHHHHHHHHcCCEEEEeccCCCCCCHHHHHHHHHhhhhcccCCCceE
Confidence 99999999999999999999 9999999999999999999999988775 3343431 15678
Q ss_pred E-EEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCC-----CCC--CCCCCcEEEecCccccCCCCceEE
Q 012785 233 E-LVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT-----SIT--YPADHDLMLFTVSKSTGHAGTRIG 296 (456)
Q Consensus 233 i-~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~-----~~~--~~~~~~i~i~S~SK~~g~~G~RiG 296 (456)
| ++++||||||.+++ ++|+++|+++|+||+|.+..+. ++. ...+++++++||||.+| +|+|+|
T Consensus 191 v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G 269 (425)
T 1vp4_A 191 IYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGLRIG 269 (425)
T ss_dssp EEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGGCEE
T ss_pred EEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-cccceE
Confidence 7 57999999999987 2788999999999999864332 111 22467999999999999 999999
Q ss_pred EEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc-C---
Q 012785 297 WALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS-G--- 372 (456)
Q Consensus 297 ~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~--- 372 (456)
|++++ +++++.+.......+++++++.|.++.++|+. . ..++++++.++.++++++.+.+.|++. +
T Consensus 270 ~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 339 (425)
T 1vp4_A 270 MVAGS-KEFIRKIVQAKQSADLCSPAITHRLAARYLER---Y------DLLEQLKPTIELYRRKRTVMLNALEEYFSDIP 339 (425)
T ss_dssp EEECC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH---S------CHHHHTHHHHHHHHHHHHHHHHHHHHHSTTST
T ss_pred EEeeC-HHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhc---C------CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99997 99999998887766788899999999999983 2 136788899999999999999999874 3
Q ss_pred CccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCC---CCCeEEEEecC-ChhHHHH
Q 012785 373 LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGF---SPKYVRISMLD-RDENYNL 446 (456)
Q Consensus 373 ~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~---~~~~iRis~~~-~~e~i~~ 446 (456)
++.+..|.+++ |+|++++. +...+.+.|.++||.++||..|+. .++++||+++. +++++++
T Consensus 340 g~~~~~~~~g~-------------~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~~ 406 (425)
T 1vp4_A 340 GVKWVKSEGGL-------------FIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVE 406 (425)
T ss_dssp TCEECCCSBSS-------------EEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHH
T ss_pred ceEEecCCccE-------------EEEEEcCCCCCHHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCCCHHHHHH
Confidence 35555555555 89999864 345566777777999999999963 46899999987 7899999
Q ss_pred HHHHHHhhh
Q 012785 447 FVQRLSKIL 455 (456)
Q Consensus 447 ~l~~L~~~l 455 (456)
++++|++++
T Consensus 407 ~l~~l~~~l 415 (425)
T 1vp4_A 407 GIKRLREVV 415 (425)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 43
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=100.00 E-value=4.8e-38 Score=315.53 Aligned_cols=322 Identities=16% Similarity=0.178 Sum_probs=257.0
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccCH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTGS 172 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~ 172 (456)
+++|||+.+++++++++.+.+... ..+... ...|++. .++||+++++++.. +|.... +++|++|+|+
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~---~~~y~~~-------~~~l~~~la~~l~~~~g~~~~-~~~v~~t~g~ 98 (399)
T 1c7n_A 31 NEVVPLSVADMEFKNPPELIEGLK-KYLDET---VLGYTGP-------TEEYKKTVKKWMKDRHQWDIQ-TDWIINTAGV 98 (399)
T ss_dssp TTCCCCCSSSCSSCCCHHHHHHHH-HHHHHC---CCSSBCC-------CHHHHHHHHHHHHHHHCCCCC-GGGEEEESSH
T ss_pred CCceeeeecCCCCCCCHHHHHHHH-HHHhcC---CCCCCCC-------cHHHHHHHHHHHHHHhCCCCC-hhhEEEcCCH
Confidence 478999999998776655554322 112111 2356664 29999999999864 565543 5789999999
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC---------cccccc----CCCeEEEEcCCC
Q 012785 173 TQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD---------AKRFNK----DGPYIELVTSPN 239 (456)
Q Consensus 173 ~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d---------~~~l~~----~~~~~i~v~~P~ 239 (456)
++++.++++++..+|| +|+++.|+|+.+...++..|.+++.++.+ .+.++. .++++|++++||
T Consensus 99 ~~a~~~~~~~l~~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~ 174 (399)
T 1c7n_A 99 VPAVFNAVREFTKPGD----GVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPH 174 (399)
T ss_dssp HHHHHHHHHHHCCTTC----EEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSB
T ss_pred HHHHHHHHHHhcCCCC----EEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCC
Confidence 9999999999999999 99999999999999999999998876653 333332 367899999999
Q ss_pred CCCcccch--------HHhhhcCcEEEeeecCCCCCC-----CCCCCC----CCCcEEEecCccccCCCCceEEEEEEeC
Q 012785 240 NPDGSVRQ--------SVVNRSGGILVHDLAYYWPQY-----TSITYP----ADHDLMLFTVSKSTGHAGTRIGWALVKD 302 (456)
Q Consensus 240 NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~-----~~~~~~----~~~~i~i~S~SK~~g~~G~RiG~l~~~~ 302 (456)
||||.+++ ++|+++|+++|+||+|.+..+ .++... .+++++++||||.+|++|+|+||+++++
T Consensus 175 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~ 254 (399)
T 1c7n_A 175 NPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKN 254 (399)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCC
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEEECC
Confidence 99999987 278999999999999986432 222221 3678999999999999999999999976
Q ss_pred HHHHHHHHHHHhhccC-cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh-cCCccccCCC
Q 012785 303 MEVAKKMTKYIELNTI-GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK-SGLFSVPELP 380 (456)
Q Consensus 303 ~~~~~~l~~~~~~~~~-~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~ 380 (456)
+++++.+.......++ +++++.|.++.++|+. . ++++++.++.++++++.+.+.|++ ++++.+.++.
T Consensus 255 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~---~--------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 323 (399)
T 1c7n_A 255 PDIRERFTKSRDATSGMPFTTLGYKACEICYKE---C--------GKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIE 323 (399)
T ss_dssp HHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH---C--------HHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCS
T ss_pred HHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhC---C--------hHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCC
Confidence 7899999887665544 6799999999998872 2 568899999999999999999998 6667777777
Q ss_pred CcccccccccCCCCCceEEeecCc---cHHHHHHHHH-hCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 381 SQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLK-GNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 381 g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~-~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|++ |+|++++. +...+.+.|. ++||.++||..|+. .++++||+++..++++++++++|++++
T Consensus 324 ~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~l~~~l~~l~~~l 390 (399)
T 1c7n_A 324 GTY-------------LQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKAL 390 (399)
T ss_dssp BSS-------------EEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred ceE-------------EEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEeccCHHHHHHHHHHHHHHH
Confidence 776 78999863 4566777775 79999999999973 578999999888899999999998875
No 44
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=100.00 E-value=4.5e-38 Score=313.93 Aligned_cols=317 Identities=16% Similarity=0.229 Sum_probs=255.8
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
+++|||+.|+|+++.++.+.+... ..+.. ...|++..| .++|+++++++++. ++++|++|+|++
T Consensus 25 ~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~----~~~y~~~~~-----~~~l~~~la~~~~~------~~~~v~~~~g~~ 88 (381)
T 1v2d_A 25 LGAVNLGQGFPSNPPPPFLLEAVR-RALGR----QDQYAPPAG-----LPALREALAEEFAV------EPESVVVTSGAT 88 (381)
T ss_dssp HTCEECCCCSCSSCCCHHHHHHHH-HHTTT----SCSCCCTTC-----CHHHHHHHHHHHTS------CGGGEEEESSHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHH-HHHHH----hcCCCCCCC-----CHHHHHHHHHhcCC------ChhhEEEcCChH
Confidence 457999999998876655554322 11221 235887767 59999999999753 456899999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC---------cccccc---CCCeEEEEcCCCCC
Q 012785 174 QLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD---------AKRFNK---DGPYIELVTSPNNP 241 (456)
Q Consensus 174 ~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d---------~~~l~~---~~~~~i~v~~P~NP 241 (456)
+++.+++.++..+|| +|++++|+|+.+...++..|.+++.++.+ .+.++. .+++++++++||||
T Consensus 89 ~a~~~~~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~np 164 (381)
T 1v2d_A 89 EALYVLLQSLVGPGD----EVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNP 164 (381)
T ss_dssp HHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTT
T ss_pred HHHHHHHHHhCCCCC----EEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCcCCEEEEECCCCCC
Confidence 999999999999999 99999999999999999999998876654 344433 25789999999999
Q ss_pred Ccccch--------HHhhhcCcEEEeeecCCCCCC----CCCCC-CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHH
Q 012785 242 DGSVRQ--------SVVNRSGGILVHDLAYYWPQY----TSITY-PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKK 308 (456)
Q Consensus 242 tG~~~~--------~l~~~~~~~iI~De~y~~~~~----~~~~~-~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~ 308 (456)
||.+++ ++|+++|+++|+||+|.+..+ .++.. ..+++++++|+||.+|++|+|+||++++ +++++.
T Consensus 165 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~-~~~~~~ 243 (381)
T 1v2d_A 165 TGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGP-KEFMPR 243 (381)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECC-TTTHHH
T ss_pred CCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeC-HHHHHH
Confidence 999986 278899999999999986433 11111 3578999999999999999999999996 889999
Q ss_pred HHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccccc
Q 012785 309 MTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLG 388 (456)
Q Consensus 309 l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~ 388 (456)
+.......+++++++.|.++.++|+... .++++++.+++++++++.+.+.|++.+ +.+..+.+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~a~~~~l~~~~---------~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~----- 308 (381)
T 1v2d_A 244 LAGMRQWTSFSAPTPLQAGVAEALKLAR---------REGFYEALREGYRRRRDLLAGGLRAMG-LRVYVPEGTY----- 308 (381)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHHH---------HTTHHHHHHHHHHHHHHHHHHHHHHTT-CCEECCSBSS-----
T ss_pred HHHHHhhcccCCCcHHHHHHHHHHhCcc---------cHHHHHHHHHHHHHHHHHHHHHHHHCC-CEecCCCcce-----
Confidence 8887776788999999999999887421 145788899999999999999999864 5666666665
Q ss_pred ccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCC---CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 389 RAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGF---SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 389 ~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~---~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+|++++.. + +.++++++||.++||..|+. .++++||+++.+++++++++++|+++++
T Consensus 309 --------~~~~~~~~~-~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~~~~~i~~~~~~l~~~l~ 369 (381)
T 1v2d_A 309 --------FLMAELPGW-D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVVN 369 (381)
T ss_dssp --------EEEEECTTC-C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC-
T ss_pred --------EEEEecChH-h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 899998643 2 77888999999999999974 4789999998899999999999998763
No 45
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.7e-38 Score=326.54 Aligned_cols=304 Identities=17% Similarity=0.184 Sum_probs=236.5
Q ss_pred cccccCCCCcccCCCHHHHHHHHHHHHHh--cCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh
Q 012785 128 LSYFSDVRNLCWFLEPEFAKEVVRLHKVV--GNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP 205 (456)
Q Consensus 128 ~~~y~~~~G~~~~~~~~lr~aia~~~~~~--g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~ 205 (456)
...|++..| .++||++|++++... |.+.. +++|++|+|+++++.+++++|..+||....+|+++.|+|+.|.
T Consensus 122 ~~~Y~~~~G-----~~~lr~~ia~~~~~~~gG~~~~-~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~ 195 (498)
T 3ihj_A 122 LGSYSASQG-----VNCIREDVAAYITRRDGGVPAD-PDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYS 195 (498)
T ss_dssp ------CCS-----CHHHHHHHHHHHHHHTTTCCCC-GGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHH
T ss_pred CCCCCCCCC-----HHHHHHHHHHHHHHhcCCCCCC-cccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHH
Confidence 356999999 599999999999654 46664 5799999999999999999999886311118999999999999
Q ss_pred hhhhhcCCeEeeeccCcc--------ccccC--------CCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeee
Q 012785 206 SITDCVKSRLYKWAGDAK--------RFNKD--------GPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDL 261 (456)
Q Consensus 206 ~~~~~~g~~~~~~~~d~~--------~l~~~--------~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De 261 (456)
..++..|++++.++.|.+ .++.. ++++++++|||||||.+++. +|++++++||+||
T Consensus 196 ~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De 275 (498)
T 3ihj_A 196 AVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADE 275 (498)
T ss_dssp HHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEc
Confidence 999999999998776643 33221 47899999999999999883 7889999999999
Q ss_pred cCCCCCCC------CCCC----------CCCCcEEEecCcccc-CCCCceEEEEEE--eCHHHHHHHHHHHhhccCcCCh
Q 012785 262 AYYWPQYT------SITY----------PADHDLMLFTVSKST-GHAGTRIGWALV--KDMEVAKKMTKYIELNTIGVSK 322 (456)
Q Consensus 262 ~y~~~~~~------~~~~----------~~~~~i~i~S~SK~~-g~~G~RiG~l~~--~~~~~~~~l~~~~~~~~~~~s~ 322 (456)
+|.+..+. ++.. ...++|+++||||.+ |++|+|+||+++ .++++++.+.+... ...+++.
T Consensus 276 ~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~-~~~~~~~ 354 (498)
T 3ihj_A 276 VYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLS-VRLCPPV 354 (498)
T ss_dssp TTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHH-HSCCCCH
T ss_pred CccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHHh-ccCCCCH
Confidence 99863332 2111 112479999999999 899999999984 34999999988765 5678899
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCcchh---HHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEE
Q 012785 323 DSQLRAAKVLKVVSDSCKPSGSEDEC---FFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAW 399 (456)
Q Consensus 323 ~~q~~a~~~L~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~ 399 (456)
+.|.++..+++....+. ...++ +++++++.++++++.+.+.|++++++++..|+|++ |+|
T Consensus 355 ~~q~a~~~~l~~~~~g~----~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg~-------------~~~ 417 (498)
T 3ihj_A 355 SGQAAMDIVVNPPVAGE----ESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAM-------------YAF 417 (498)
T ss_dssp HHHHHHHHHTCCCCTTS----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSS-------------EEC
T ss_pred HHHHHHHHHhcCCccCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeEE-------------EEE
Confidence 99999888886211110 01233 34677889999999999999998778888889988 888
Q ss_pred eecCc-------------c-HHH-HHHHHHhCCEEeecCCCCCC--CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 400 LKCEQ-------------E-IED-CESFLKGNKILTRSGKHFGF--SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 400 ~~~~~-------------~-~~~-~~~~l~~~gI~v~pg~~fg~--~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
++++. + .+. +.++|+++||.++||+.|+. +++++|++++.+++++++++++|++++
T Consensus 418 ~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~~~~e~l~~~i~~L~~~~ 490 (498)
T 3ihj_A 418 PRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFH 490 (498)
T ss_dssp CEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCSCHHHHHHHHHHHHHHH
T ss_pred EeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 76531 1 222 67788899999999999984 567999999778999999999999875
No 46
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=100.00 E-value=6.7e-38 Score=318.29 Aligned_cols=330 Identities=16% Similarity=0.189 Sum_probs=262.9
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.++.+|||+.|+|++++++.+.+... ..+..+. ...|++..| ..++|++++++++. +|.... +++|++|+
T Consensus 42 ~g~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~~--~~~y~~~~g-----~~~lr~~la~~~~~~~g~~~~-~~~i~~t~ 112 (437)
T 3g0t_A 42 TGTKFCRMEMGVPGLPAPQIGIETEI-QKLREGV--ASIYPNLDG-----LPELKQEASRFAKLFVNIDIP-ARACVPTV 112 (437)
T ss_dssp HTCCCEECCCCSCCSCCCHHHHHHHH-HHHHHTG--GGSCCCTTC-----CHHHHHHHHHHHHHHHCCCCC-GGGEEEES
T ss_pred cCCCEEeccCcCCCCCCCHHHHHHHH-HHHhCCc--CcCCCCCCC-----hHHHHHHHHHHHHHhhCCCCC-cccEEEeC
Confidence 45789999999999887766654322 1222221 246888888 59999999999964 566554 57999999
Q ss_pred CHHHHHHHHHHHhc--CCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-------cccc----cCCCeEEEEcC
Q 012785 171 GSTQLFQAALYALS--SQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-------KRFN----KDGPYIELVTS 237 (456)
Q Consensus 171 G~~~al~~~~~~l~--~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-------~~l~----~~~~~~i~v~~ 237 (456)
|++++++++++++. ++||. .+|+++.|+|+.+...++..|.+++.++.|. +.++ ..+++++++++
T Consensus 113 g~t~al~~~~~~l~~~~~gd~--~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~ 190 (437)
T 3g0t_A 113 GSMQGCFVSFLVANRTHKNRE--YGTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSN 190 (437)
T ss_dssp HHHHHHHHHHHHHTTSCTTCS--CCEEEEESCCHHHHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEES
T ss_pred CHHHHHHHHHHHHhcCCCCCc--cEEEEeCCCcHhHHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeC
Confidence 99999999999998 88861 1499999999999999999999998877643 3332 34678999999
Q ss_pred CCCCCcccch--------HHhhhcCcEEEeeecCCCCCC---CCC-------C---CCCCCcEEEecCccccCCCCceEE
Q 012785 238 PNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQY---TSI-------T---YPADHDLMLFTVSKSTGHAGTRIG 296 (456)
Q Consensus 238 P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~---~~~-------~---~~~~~~i~i~S~SK~~g~~G~RiG 296 (456)
||||||.+++ ++|+++|+++|+||+|.+..+ .++ . ...+++++++||||.+|++|+|+|
T Consensus 191 p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 270 (437)
T 3g0t_A 191 PNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIG 270 (437)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCE
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccceeE
Confidence 9999999987 278899999999999985322 122 1 236789999999999999999999
Q ss_pred EEEEeCHHHHH-H-----------------HHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHH
Q 012785 297 WALVKDMEVAK-K-----------------MTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMS 358 (456)
Q Consensus 297 ~l~~~~~~~~~-~-----------------l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~ 358 (456)
|++++ +++++ . +.......+++++.+.|.++.++|+.... +++++++.+++++
T Consensus 271 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--------~~~~~~~~~~~~~ 341 (437)
T 3g0t_A 271 VLMIS-GKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACND--------GEYNFRDSVIEYG 341 (437)
T ss_dssp EEEEC-HHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHT--------TSCCHHHHHHHHH
T ss_pred EEEEC-HHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHh--------HHHHHHHHHHHHH
Confidence 99997 88888 7 77776667889999999999999984221 1334889999999
Q ss_pred HHHHHHHHHHHhcCCcccc------CC-CCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCCCC
Q 012785 359 TRWKQLRMAVQKSGLFSVP------EL-PSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGFSP 430 (456)
Q Consensus 359 ~~~~~l~~~L~~~~~~~~~------~~-~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~~~ 430 (456)
++++.+.+.|+++ ++.+. .+ .+++ |+|++++. +.+.+.+.|.++||.++||..|+...
T Consensus 342 ~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~~~~ 407 (437)
T 3g0t_A 342 RKARIMKKMFLDN-GFNIVYDKDGNEPLADGF-------------YFTVGYKGMDSSKLIEKFVRYGMCAITLKTTGSKR 407 (437)
T ss_dssp HHHHHHHHHHHTT-TEEESSCEETTEECCSSS-------------EEEEEETTCCHHHHHHHHHHTTEECEESTTTTCCC
T ss_pred HHHHHHHHHHHHc-CCEEeccccCCCCCceeE-------------EEEEecCCCCHHHHHHHHHHcCeEEeeccccCCCC
Confidence 9999999999987 35554 23 5555 89999863 56778888888999999999997644
Q ss_pred -CeEEEEecC-ChhHHHHHHHHHHhhh
Q 012785 431 -KYVRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 431 -~~iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
+++||+++. +++++++++++|++++
T Consensus 408 ~~~iRis~~~~~~e~i~~~~~~l~~~~ 434 (437)
T 3g0t_A 408 NEAMRICTSLLPESQFPDLEKRLQMLN 434 (437)
T ss_dssp TTCEEEECSSSCGGGHHHHHHHHHHHH
T ss_pred CCEEEEEEecCCHHHHHHHHHHHHHHH
Confidence 899999987 8999999999999875
No 47
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=100.00 E-value=1.2e-37 Score=314.51 Aligned_cols=324 Identities=16% Similarity=0.170 Sum_probs=249.3
Q ss_pred CCeEEecCCCC----CCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHH-------HhcCccCC
Q 012785 94 ERIINVDHGDP----TMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHK-------VVGNAITE 162 (456)
Q Consensus 94 ~~~i~l~~g~p----~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~-------~~g~~~~~ 162 (456)
+++|+|+.|+| ++++++.+.+... ..+.... ...|++..| .++||++++++++ ..|....
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~-~~~~~~~--~~~y~~~~~-----~~~lr~~la~~~~~~~~~~~~~~~~~~- 103 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLK-EAIDSQE--CNGYFPTVG-----SPEAREAVATWWRNSFVHKEELKSTIV- 103 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHH-HHHHTTC--SSSCCCTTC-----CHHHHHHHHHHHHHHHCCSTTTGGGCC-
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHH-HHhhCCc--cCCcCCCCC-----CHHHHHHHHHHHHhhhcccccCCCCCC-
Confidence 57899999997 3555554443322 1122221 246877777 5999999999998 5455554
Q ss_pred CceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC--------cccccc---CCCe
Q 012785 163 NHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD--------AKRFNK---DGPY 231 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d--------~~~l~~---~~~~ 231 (456)
+++|++|+|+++++++++++++.+|| +|++++|+|+.+...++..|.+++.++.| .+.++. .+++
T Consensus 104 ~~~v~~~~g~~~al~~~~~~l~~~gd----~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 179 (416)
T 1bw0_A 104 KDNVVLCSGGSHGILMAITAICDAGD----YALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTK 179 (416)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTTC----EEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEE
T ss_pred cceEEEeCChHHHHHHHHHHhCCCCC----EEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhccCCe
Confidence 57999999999999999999999999 99999999999999999999998876643 333332 2568
Q ss_pred EEEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCC---------CCCC--CCCCCcEEEecCccccCCCC
Q 012785 232 IELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQY---------TSIT--YPADHDLMLFTVSKSTGHAG 292 (456)
Q Consensus 232 ~i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~---------~~~~--~~~~~~i~i~S~SK~~g~~G 292 (456)
++++++||||||.+++ ++|+++|+++|+||+|.+..+ .++. ...+++++++||||.++++|
T Consensus 180 ~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 259 (416)
T 1bw0_A 180 LLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPG 259 (416)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGG
T ss_pred EEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCC
Confidence 8999999999999987 278899999999999986322 2222 12346899999999999999
Q ss_pred ceEEEEEEeCH-HHHHHHH----HHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 012785 293 TRIGWALVKDM-EVAKKMT----KYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMA 367 (456)
Q Consensus 293 ~RiG~l~~~~~-~~~~~l~----~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 367 (456)
+|+||++++++ ++++.+. ... ..+++++++.|.++.++|+ .. .++++++.+++++++++.+.+.
T Consensus 260 lr~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~---~~-------~~~~~~~~~~~~~~~~~~l~~~ 328 (416)
T 1bw0_A 260 WRLGWLLYVDPHGNGPSFLEGLKRVG-MLVCGPCTVVQAALGEALL---NT-------PQEHLDQIVAKIEESAMYLYNH 328 (416)
T ss_dssp GCCEEEEEECTTCSCHHHHHHHHHHH-HHHTCSCHHHHHHHHHHHH---SS-------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeeCchhhHHHHHHHHHHHh-ccccCCCcHHHHHHHHHHh---cc-------cHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999854 3444333 321 2367889999999999987 22 1578889999999999999999
Q ss_pred HHhcCCccccCCCCcccccccccCCCCCceEEeecCc-------cHHHHHHHH-HhCCEEeecCCCCCCCCCeEEEEecC
Q 012785 368 VQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-------EIEDCESFL-KGNKILTRSGKHFGFSPKYVRISMLD 439 (456)
Q Consensus 368 L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-------~~~~~~~~l-~~~gI~v~pg~~fg~~~~~iRis~~~ 439 (456)
|++++++.+..+.+++ |+|++++. +...+.+.| +++||.++||..|+. ++++||+++.
T Consensus 329 L~~~~g~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~-~~~iRis~~~ 394 (416)
T 1bw0_A 329 IGECIGLAPTMPRGAM-------------YLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA-PGFTRLTTTR 394 (416)
T ss_dssp HTTSTTEEECCCCBTT-------------EEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTC-TTEEEEECCS
T ss_pred HHhCCCCcccCCCeeE-------------EEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCC-CCeEEEEecC
Confidence 9987556666566565 88988752 345555554 689999999999975 6899999977
Q ss_pred ChhHHHHHHHHHHhhh
Q 012785 440 RDENYNLFVQRLSKIL 455 (456)
Q Consensus 440 ~~e~i~~~l~~L~~~l 455 (456)
+++++++++++|++++
T Consensus 395 ~~e~l~~~l~~l~~~l 410 (416)
T 1bw0_A 395 PVEVYREAVERIKAFC 410 (416)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8999999999999875
No 48
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=100.00 E-value=3.7e-38 Score=317.39 Aligned_cols=326 Identities=19% Similarity=0.245 Sum_probs=258.6
Q ss_pred hcCCCCeEEecCCCC---CCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCce
Q 012785 90 QDGGERIINVDHGDP---TMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHH 165 (456)
Q Consensus 90 ~~~~~~~i~l~~g~p---~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~ 165 (456)
...++.+|+|+.|+| +++.++.+.+... ..+.... ..|++..| .++++++++++++. +|.... +++
T Consensus 34 ~~~g~~~i~l~~~~~~~~~~~~~~~v~~a~~-~~~~~~~---~~y~~~~g-----~~~l~~~la~~l~~~~g~~~~-~~~ 103 (406)
T 1xi9_A 34 EKKGIKVIRLNIGDPVKFDFQPPEHMKEAYC-KAIKEGH---NYYGDSEG-----LPELRKAIVEREKRKNGVDIT-PDD 103 (406)
T ss_dssp HHTTCCCEECCCCCGGGTTCCCCHHHHHHHH-HHHHTTC---CSCCCTTC-----CHHHHHHHHHHHHHHHCCCCC-GGG
T ss_pred HHcCCCEEEecCCCCCcCCCCCCHHHHHHHH-HHHhcCC---CCCCCCCC-----cHHHHHHHHHHHHHhcCCCCC-HHH
Confidence 345678999999999 6665554443321 1222221 35877777 59999999999964 565554 579
Q ss_pred EEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC--------cccccc---CCCeEEE
Q 012785 166 IVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD--------AKRFNK---DGPYIEL 234 (456)
Q Consensus 166 I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d--------~~~l~~---~~~~~i~ 234 (456)
|++|+|+++++.+++++++++|| +|++++|+|+.+...++..|.+++.++.| .+.++. .++++++
T Consensus 104 v~~t~g~~~al~~~~~~l~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~ 179 (406)
T 1xi9_A 104 VRVTAAVTEALQLIFGALLDPGD----EILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIA 179 (406)
T ss_dssp EEEESHHHHHHHHHHHHHCCTTC----EEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEE
T ss_pred EEEcCChHHHHHHHHHHhCCCCC----EEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCcCceEEE
Confidence 99999999999999999999999 99999999999999999999998877654 333332 2578899
Q ss_pred EcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCC----CCCC-CCCC-cEEEecCccccCCCCceEEEEE-
Q 012785 235 VTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT----SITY-PADH-DLMLFTVSKSTGHAGTRIGWAL- 299 (456)
Q Consensus 235 v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~----~~~~-~~~~-~i~i~S~SK~~g~~G~RiG~l~- 299 (456)
+++||||||.+++ ++|+++|+++|+||+|.+..+. ++.. ..++ +++++||||.+|++|+|+||++
T Consensus 180 i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 259 (406)
T 1xi9_A 180 VINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYF 259 (406)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEE
T ss_pred EECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCccEEEEEEE
Confidence 9999999999976 2788999999999999864331 1111 1567 8999999999999999999999
Q ss_pred -EeCH----HHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 012785 300 -VKDM----EVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLF 374 (456)
Q Consensus 300 -~~~~----~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~ 374 (456)
++ + ++++.+....... ++++++.|.++.++|+ .. .++++++++.++++++.+.+.|++++++
T Consensus 260 ~~~-~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~---~~--------~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 326 (406)
T 1xi9_A 260 VDP-ENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLT---GP--------MDYLKEYMKKLKERRDYIYKRLNEIPGI 326 (406)
T ss_dssp ECT-TCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHH---SC--------CHHHHHHHHHHHHHHHHHHHHHHTSTTE
T ss_pred ecC-chhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHh---CC--------cHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 76 7 8999998876655 7889999999999986 22 3458889999999999999999987666
Q ss_pred cccCCCCcccccccccCCCCCceEEeecCc----cHHHHHHHHH-hCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHH
Q 012785 375 SVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----EIEDCESFLK-GNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFV 448 (456)
Q Consensus 375 ~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~-~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l 448 (456)
.+..+.+++ |+|++++. +...+.+.|. ++||.++||..|+. .++++||+++.+++++++++
T Consensus 327 ~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~~~~~~i~~~~ 393 (406)
T 1xi9_A 327 STTKPQGAF-------------YIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAM 393 (406)
T ss_dssp ECCCCCBSS-------------EECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHH
T ss_pred eeecCCeeE-------------EEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEecCCHHHHHHHH
Confidence 666666666 78877752 4556666664 89999999999974 46899999987899999999
Q ss_pred HHHHhhh
Q 012785 449 QRLSKIL 455 (456)
Q Consensus 449 ~~L~~~l 455 (456)
++|++++
T Consensus 394 ~~l~~~l 400 (406)
T 1xi9_A 394 DRFEKFM 400 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998875
No 49
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=100.00 E-value=9.6e-38 Score=312.52 Aligned_cols=321 Identities=14% Similarity=0.138 Sum_probs=251.7
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHH-HHHHHHHHHHH-hcCccCCCceEEEccC
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPE-FAKEVVRLHKV-VGNAITENHHIVVGTG 171 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~-lr~aia~~~~~-~g~~~~~~~~I~~t~G 171 (456)
+++|||+.++++++.++.+.+... ..+... ...|++. . ++ ||++++++++. +|.... +++|++|+|
T Consensus 28 ~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~---~~~y~~~-~------~~~lr~~la~~l~~~~g~~~~-~~~v~~t~g 95 (390)
T 1d2f_A 28 ADLLPFTISDMDFATAPCIIEALN-QRLMHG---VFGYSRW-K------NDEFLAAIAHWFSTQHYTAID-SQTVVYGPS 95 (390)
T ss_dssp --CEECCSSSCSSCCCHHHHHHHH-HHHTTC---CCCCCCS-C------CHHHHHHHHHHHHHHSCCCCC-GGGEEEESC
T ss_pred CCeeEeeecCCCCCCCHHHHHHHH-HHHhCC---CCCCCCC-C------hHHHHHHHHHHHHHhcCCCCC-HHHEEEcCC
Confidence 468999999998776655554322 112211 2356664 2 78 99999999965 455443 579999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC---------cccccc----CCCeEEEEcCC
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD---------AKRFNK----DGPYIELVTSP 238 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d---------~~~l~~----~~~~~i~v~~P 238 (456)
++++++++++++..+|| +|+++.|+|+.+...++..|.+++.++.+ .+.++. .+++++++++|
T Consensus 96 ~~~al~~~~~~l~~~gd----~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p 171 (390)
T 1d2f_A 96 VIYMVSELIRQWSETGE----GVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSP 171 (390)
T ss_dssp HHHHHHHHHHHSSCTTC----EEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESS
T ss_pred HHHHHHHHHHHhcCCCC----EEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCC
Confidence 99999999999999999 99999999999999999999998876653 333332 26788999999
Q ss_pred CCCCcccch--------HHhhhcCcEEEeeecCCCCCCC-----CCCCCC-CC-cEEEecCccccCCCCceEEEEEEeCH
Q 012785 239 NNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT-----SITYPA-DH-DLMLFTVSKSTGHAGTRIGWALVKDM 303 (456)
Q Consensus 239 ~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~-----~~~~~~-~~-~i~i~S~SK~~g~~G~RiG~l~~~~~ 303 (456)
|||||.+++ ++|+++|+++|+||+|.+..+. ++.... +. .+ ++||||.+|++|+|+||++++++
T Consensus 172 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~~~ 250 (390)
T 1d2f_A 172 QNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGAYGIIENS 250 (390)
T ss_dssp CTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCEEEEECSH
T ss_pred CCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhheEEEECCH
Confidence 999999987 2788999999999999864322 221111 21 44 99999999999999999999668
Q ss_pred HHHHHHHHHHh-hccC-cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh-cCCccccCCC
Q 012785 304 EVAKKMTKYIE-LNTI-GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK-SGLFSVPELP 380 (456)
Q Consensus 304 ~~~~~l~~~~~-~~~~-~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~ 380 (456)
++++.+..... ..++ +++++.|.++.++|+. . ++++++.++.++++++.+.+.|++ ++++.+.++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~--------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 319 (390)
T 1d2f_A 251 SSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQ---G--------APWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQ 319 (390)
T ss_dssp HHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHH---C--------HHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCS
T ss_pred HHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhc---C--------HHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecCC
Confidence 89888887765 4454 7899999999888872 2 568899999999999999999998 6667777777
Q ss_pred CcccccccccCCCCCceEEeecCc---cHHHHHHHHH-hCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 381 SQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLK-GNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 381 g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~-~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|++ |+|++++. +...+.+.|. ++||.++||..|+. .++++||+++.+++++++++++|++++
T Consensus 320 ~~~-------------~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l 386 (390)
T 1d2f_A 320 STY-------------LAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAI 386 (390)
T ss_dssp BCS-------------EEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred ccE-------------EEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 776 78998863 4566777776 78999999999973 478999999888899999999999876
No 50
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=100.00 E-value=1.4e-37 Score=304.78 Aligned_cols=309 Identities=16% Similarity=0.200 Sum_probs=242.6
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEcc
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGT 170 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~ 170 (456)
...+.+|+|+.+++++++++.+.+.... ... ....|++ .| .++||++++++++. ++++|++|+
T Consensus 13 ~~~~~~i~l~~n~~~~~~~~~v~~a~~~--~~~---~~~~y~~-~~-----~~~lr~~la~~~~~------~~~~i~~t~ 75 (337)
T 3p1t_A 13 RAAAQAVCLAFNENPEAVEPRVQAAIAA--AAA---RINRYPF-DA-----EPRVMRKLAEHFSC------PEDNLMLVR 75 (337)
T ss_dssp -CCCCCEECSSCCCCSCCCHHHHHHHHH--HGG---GTTSCCT-TH-----HHHHHHHHHHHHTS------CGGGEEEES
T ss_pred cCCCCceEeeCCCCCCCCCHHHHHHHHH--hhh---hhccCCC-Cc-----hHHHHHHHHHHhCc------CHHHEEEeC
Confidence 3456789999998888777666543221 112 2346765 46 59999999999864 457999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC------cccccc-CCCeEEEEcCCCCCCc
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD------AKRFNK-DGPYIELVTSPNNPDG 243 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d------~~~l~~-~~~~~i~v~~P~NPtG 243 (456)
|+++++++++.++ +|| +|++++|+|+.+...++..|.+++.++.| .+.++. .+++++++++||||||
T Consensus 76 G~~~~l~~~~~~~--~gd----~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~v~i~~p~nptG 149 (337)
T 3p1t_A 76 GIDECFDRISAEF--SSM----RFVTAWPGFDGYRARIAVSGLRHFEIGLTDDLLLDPNDLAQVSRDDCVVLANPSNPTG 149 (337)
T ss_dssp HHHHHHHHHHHHS--TTS----EEEEESSSCSHHHHHHTTSCCEEEEECBCTTSSBCHHHHTTCCTTEEEEEESSCTTTC
T ss_pred CHHHHHHHHHHhc--CCC----eEEEeCCCcHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHhhcCCCEEEEeCCCCCCC
Confidence 9999999999988 888 99999999999999999999999887754 334443 3678999999999999
Q ss_pred ccch-----HHhhhcCcEEEeeecCCCCCCCC--CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhc
Q 012785 244 SVRQ-----SVVNRSGGILVHDLAYYWPQYTS--ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELN 316 (456)
Q Consensus 244 ~~~~-----~l~~~~~~~iI~De~y~~~~~~~--~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~ 316 (456)
.+++ ++|+++++ +|+||+|.+..... .....+++++++||||.+|++|+|+||++++ +++++.+.+.. .
T Consensus 150 ~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~--~ 225 (337)
T 3p1t_A 150 QALSAGELDQLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGP-SELIAAMKRKQ--W 225 (337)
T ss_dssp CCCCHHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCEEEECC-HHHHHHHHTTS--C
T ss_pred CCCCHHHHHHHHHhCCc-EEEECCChhhccccccccccCCCEEEEeeCchhccCcchheEEEEeC-HHHHHHHHhhc--C
Confidence 9988 37888887 55699998532221 2234578999999999999999999999996 99999887764 3
Q ss_pred cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCc
Q 012785 317 TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPA 396 (456)
Q Consensus 317 ~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 396 (456)
.++++.+.|.++.++|+ + .+++++.++++.++++.+.+.|++++ +.+.++.| +
T Consensus 226 ~~~~~~~~~~a~~~~l~---~---------~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~--------------~ 278 (337)
T 3p1t_A 226 FCNVGTLDLHALEAALD---N---------DRAREAHIAKTLAQRRRVADALRGLG-YRVASSEA--------------N 278 (337)
T ss_dssp TTCSCHHHHHHHHHHHT---C---------HHHHHHHHHHHHHHHHHHHHHHHHTT-CCBCCCSS--------------S
T ss_pred CCCCCHHHHHHHHHHhC---C---------HHHHHHHHHHHHHHHHHHHHHHHHCc-CEECCCCC--------------e
Confidence 67889999999998887 2 34456667777888899999999874 44444333 3
Q ss_pred eEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 397 FAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 397 f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+|+..+. .+.+.+.|+++||.++||..|+. ++++||+++ ++++++++++.|+++++
T Consensus 279 ~~~~~~~~-~~~~~~~l~~~gi~v~~g~~~~~-~~~iRis~~-~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 279 FVLVENAA-GERTLRFLRERGIQVKDAGQFGL-HHHIRISIG-REEDNDRLLAALAEYSD 335 (337)
T ss_dssp EEEEECTT-THHHHHHHHHTTEECEEGGGGTC-CSEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred EEEEEcCC-HHHHHHHHHHCCeEEEECccCCC-CCeEEEecC-CHHHHHHHHHHHHHHhh
Confidence 67877753 45677888999999999999976 789999995 78899999999998753
No 51
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=100.00 E-value=1.9e-37 Score=307.64 Aligned_cols=311 Identities=17% Similarity=0.215 Sum_probs=245.0
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccC
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTG 171 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G 171 (456)
.++.+|||+.|++++..++.+.+... ..+ . ....|++. | ..+||++++++++. ++++|++|+|
T Consensus 22 ~~~~~idl~~~~~~~~~~~~v~~a~~-~~~-~---~~~~y~~~-~-----~~~l~~~la~~~~~------~~~~v~~~~g 84 (364)
T 1lc5_A 22 SPDQLLDFSANINPLGMPVSVKRALI-DNL-D---CIERYPDA-D-----YFHLHQALARHHQV------PASWILAGNG 84 (364)
T ss_dssp CGGGSEECSSCCCTTCCCHHHHHHHH-HTG-G---GGGSCCCT-T-----CHHHHHHHHHHHTS------CGGGEEEESS
T ss_pred CccceEEeccccCCCCCCHHHHHHHH-HHH-H---HhhcCCCC-C-----HHHHHHHHHHHHCc------CHHHEEECCC
Confidence 34568999999987765555543321 111 1 13457664 5 59999999999953 4579999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-ccc---c----c--CCCeEEEEcCCCCC
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-KRF---N----K--DGPYIELVTSPNNP 241 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-~~l---~----~--~~~~~i~v~~P~NP 241 (456)
++++++++++++ +|| +|+++.|+|+.+...++..|.+++.++.+. +++ + . .+++++++++||||
T Consensus 85 ~~~al~~~~~~~--~gd----~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~v~i~~p~np 158 (364)
T 1lc5_A 85 ETESIFTVASGL--KPR----RAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNP 158 (364)
T ss_dssp HHHHHHHHHHHH--CCS----EEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTT
T ss_pred HHHHHHHHHHHc--CCC----eEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccchhHHHHHhccCCCCEEEEeCCCCC
Confidence 999999999998 668 999999999999999999999998887764 222 1 1 35788999999999
Q ss_pred Ccccch--------HHhhhcCcEEEeeecCCCCCCC--C-C--CCCCCCcEEEecCccccCCCCceEEEEE-EeCHHHHH
Q 012785 242 DGSVRQ--------SVVNRSGGILVHDLAYYWPQYT--S-I--TYPADHDLMLFTVSKSTGHAGTRIGWAL-VKDMEVAK 307 (456)
Q Consensus 242 tG~~~~--------~l~~~~~~~iI~De~y~~~~~~--~-~--~~~~~~~i~i~S~SK~~g~~G~RiG~l~-~~~~~~~~ 307 (456)
||.+++ ++|+++|+++|+||+|.+..+. + + ....+++++++||||.+|++|+|+||++ ++ +++++
T Consensus 159 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~~~ 237 (364)
T 1lc5_A 159 TGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSD-DAAMA 237 (364)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCC-HHHHH
T ss_pred CCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCccceEEEEECC-HHHHH
Confidence 999987 2788999999999999854321 1 2 1335689999999999999999999999 75 99999
Q ss_pred HHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccc
Q 012785 308 KMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFL 387 (456)
Q Consensus 308 ~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~ 387 (456)
.+..... +++++++.|.++.++|+ + .+++++.++.++++++.+.+.|++++++.+.++.
T Consensus 238 ~l~~~~~--~~~~~~~~~~~~~~~l~---~---------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~------- 296 (364)
T 1lc5_A 238 RMRRQQM--PWSVNALAALAGEVALQ---D---------SAWQQATWHWLREEGARFYQALCQLPLLTVYPGR------- 296 (364)
T ss_dssp HHHHHSC--TTCSCHHHHHHHHHGGG---C---------HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCS-------
T ss_pred HHHHhCC--CCCCCHHHHHHHHHHHh---C---------cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCC-------
Confidence 8887754 67899999999999887 2 4688899999999999999999987555554332
Q ss_pred cccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 388 GRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 388 ~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
++|+|++++.+...+.+.|.++||.++||..|+. .++++||+++ ++++++++++.|++++
T Consensus 297 -------g~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~ 357 (364)
T 1lc5_A 297 -------ANYLLLRCEREDIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALRNVL 357 (364)
T ss_dssp -------SSEEEEEESCTTCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred -------CeEEEEECCCcHHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEeC-CHHHHHHHHHHHHHHh
Confidence 3378888865444577778889999999999953 5789999984 6778888998888775
No 52
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=100.00 E-value=1.3e-37 Score=321.90 Aligned_cols=303 Identities=17% Similarity=0.182 Sum_probs=241.5
Q ss_pred cccccCCCCcccCCCHHHHHHHHHHHH-HhcCccCCCceEEEccCHHHHHHHHHHHhc-CCCCCCCcEEEEeCCCCCChh
Q 012785 128 LSYFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAITENHHIVVGTGSTQLFQAALYALS-SQDASEPISVVSAAPYYSSYP 205 (456)
Q Consensus 128 ~~~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~I~~t~G~~~al~~~~~~l~-~~gd~~~~~Vlv~~P~y~~~~ 205 (456)
...|++..| .++||++++++++ ..|.... +++|++|+|+++++.+++++++ .+|| +|++++|+|+.+.
T Consensus 127 ~~~Y~~~~G-----~~~lr~~ia~~~~~~~g~~~~-~~~i~~t~G~~~al~~~~~~l~~~~gd----~Vlv~~p~y~~~~ 196 (500)
T 3tcm_A 127 TGAYSHSQG-----IHGLRDAIASGIASRDGFPAN-ADDIFLTDGASPGVHLMMQLLIRNEKD----GILVPIPQYPLYS 196 (500)
T ss_dssp SSSCCCTTC-----CHHHHHHHHHHHHHHHSSCCC-GGGEEEESSSHHHHHHHHHHHCCSTTE----EEEEEESCCTHHH
T ss_pred CCCcCCCcC-----hHHHHHHHHHHHHhhcCCCCC-cccEEEcCCHHHHHHHHHHHHcCCCCC----EEEEeCCCcHhHH
Confidence 456898889 5999999999995 4566654 5799999999999999999998 7999 9999999999999
Q ss_pred hhhhhcCCeEeeeccCcc--------cccc---C------CCeEEEEcCCCCCCcccchH--------HhhhcCcEEEee
Q 012785 206 SITDCVKSRLYKWAGDAK--------RFNK---D------GPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHD 260 (456)
Q Consensus 206 ~~~~~~g~~~~~~~~d~~--------~l~~---~------~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~D 260 (456)
..++..|++++.+++|.+ .++. . ++++|+++|||||||.+++. +|+++++++|+|
T Consensus 197 ~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~D 276 (500)
T 3tcm_A 197 ASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLAD 276 (500)
T ss_dssp HHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 999999999988776543 3322 1 56889999999999999882 689999999999
Q ss_pred ecCCCCCC------CCCC---------CCCCCcEEEecCcccc-CCCCceEEEEEEe--CHHHHHHHHHHHhhccCcCCh
Q 012785 261 LAYYWPQY------TSIT---------YPADHDLMLFTVSKST-GHAGTRIGWALVK--DMEVAKKMTKYIELNTIGVSK 322 (456)
Q Consensus 261 e~y~~~~~------~~~~---------~~~~~~i~i~S~SK~~-g~~G~RiG~l~~~--~~~~~~~l~~~~~~~~~~~s~ 322 (456)
|+|.+..+ .++. ....++|+++||||.| |++|+|+||+++. ++++++.+.+... ...+++.
T Consensus 277 eay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 355 (500)
T 3tcm_A 277 EVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIAS-VNLCSNI 355 (500)
T ss_dssp CTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHHHH-TTCCCCH
T ss_pred cCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHHHh-cccCCCH
Confidence 99986322 1111 1123579999999999 8999999999982 3889999988764 5788899
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeec
Q 012785 323 DSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKC 402 (456)
Q Consensus 323 ~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~ 402 (456)
+.|.++..+++....+.. ....+.++++.+++.++++++.+.+.|++++++++..++|++ |+|+++
T Consensus 356 ~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g~~-------------~~~~~~ 421 (500)
T 3tcm_A 356 TGQILASLVMNPPKASDE-SYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAM-------------YVFPQI 421 (500)
T ss_dssp HHHHHHHHHHSCCCSSST-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBTT-------------EECCEE
T ss_pred HHHHHHHHHhcCccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCeEE-------------EEeeee
Confidence 999999998862110100 000134667788899999999999999998778888888888 888655
Q ss_pred C--cc-------------HHHHHHHHHhCCEEeecCCCCCC--CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 403 E--QE-------------IEDCESFLKGNKILTRSGKHFGF--SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 403 ~--~~-------------~~~~~~~l~~~gI~v~pg~~fg~--~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
. .. ...+.++|+++||.++||+.|+. +.++||++++.+++++++++++|++++
T Consensus 422 ~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~i~~l~~~~ 491 (500)
T 3tcm_A 422 CLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFH 491 (500)
T ss_dssp CCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESCSCTTTHHHHHHHHHHHH
T ss_pred cCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH
Confidence 3 21 12256788899999999999974 567999999888899999999999875
No 53
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=100.00 E-value=4.1e-38 Score=318.59 Aligned_cols=324 Identities=14% Similarity=0.107 Sum_probs=246.9
Q ss_pred CCCCeEEecCC---CCCCCch--hHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCc--
Q 012785 92 GGERIINVDHG---DPTMYEK--YWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENH-- 164 (456)
Q Consensus 92 ~~~~~i~l~~g---~p~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~-- 164 (456)
..+++|||+.| +|++.++ +.+.++.. ..+..+. ...|++..| .++||+++++++...+....+++
T Consensus 47 ~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~-~~~~~~~--~~~Y~~~~g-----~~~lr~~ia~~l~~~~~~~~~~~~~ 118 (420)
T 4f4e_A 47 TRPTKVNLGVGVYTNEDGKIPLLRAVRDAEK-ARVEAGL--PRGYLPIDG-----IAAYDASVQKLLLGDDSPLIAAGRV 118 (420)
T ss_dssp CCSSCEECCCCSCCCTTSCCCCCHHHHHHHH-HHHHTCC--CCCCCCTTC-----CHHHHHHHHHHHHCTTCHHHHTTCE
T ss_pred CCCCcEEeeeeeeECCCCCccCcHHHHHHHH-HHhccCC--CCCCCCCCC-----cHHHHHHHHHHhcCCCccccccCce
Confidence 34588999999 7877665 44444322 2222211 236888888 59999999999965333211346
Q ss_pred eEEEccCHHHHHHHHH--HHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc--------Ccccccc------C
Q 012785 165 HIVVGTGSTQLFQAAL--YALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG--------DAKRFNK------D 228 (456)
Q Consensus 165 ~I~~t~G~~~al~~~~--~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~--------d~~~l~~------~ 228 (456)
+|++|+|+++++++++ .+++.+|| +|++++|+|+++...++..|.+++.++. |.+.++. .
T Consensus 119 ~i~~t~G~t~al~~~~~~~~~~~~gd----~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 194 (420)
T 4f4e_A 119 VTAQALGGTGALKIGADFLRTLNPKA----KVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEP 194 (420)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHCTTC----CEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCCT
T ss_pred EEEECCccHHHHHHHHHHHHHhCCCC----EEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCCC
Confidence 8999999999999994 45678999 9999999999999999999999988776 3343322 3
Q ss_pred CCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCC------CC---CCCCCCcEEEecCccccCCC
Q 012785 229 GPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYT------SI---TYPADHDLMLFTVSKSTGHA 291 (456)
Q Consensus 229 ~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~------~~---~~~~~~~i~i~S~SK~~g~~ 291 (456)
+++++++++||||||.+++. +|+++|+++|+||+|.+..+. ++ ....+++|+++||||.+|++
T Consensus 195 ~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 274 (420)
T 4f4e_A 195 GTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLY 274 (420)
T ss_dssp TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCG
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCc
Confidence 56899999999999999872 788999999999999864432 11 13467899999999999999
Q ss_pred CceEEEEEE--eCHHHHHH----HHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 292 GTRIGWALV--KDMEVAKK----MTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 292 G~RiG~l~~--~~~~~~~~----l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
|+|+||+++ +++++++. ++........+++.+.|.++..+|....-.. .+++++++++++++++++.+.
T Consensus 275 G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~~~~~~~~~~~~l~ 349 (420)
T 4f4e_A 275 GERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRA-----SWVQELGEMRDRIRAMRNGLV 349 (420)
T ss_dssp GGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 999999874 34665554 3333334566788999999998887210000 025678999999999999999
Q ss_pred HHHHhc---CCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC-Ch
Q 012785 366 MAVQKS---GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD-RD 441 (456)
Q Consensus 366 ~~L~~~---~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-~~ 441 (456)
+.|+++ +++.+..+.+++ |+|++++ .+.+.++++++||.+.|+. ||+++. ++
T Consensus 350 ~~L~~~~~~~~~~~~~~~~g~-------------~~~~~~~--~~~~~~~l~~~gI~v~~~~---------Ris~~~~~~ 405 (420)
T 4f4e_A 350 ERLKAAGIERDFSFINAQRGM-------------FSYSGLT--SAQVDRLREEFGIYAVSTG---------RICVAALNT 405 (420)
T ss_dssp HHHHHTTCSSCCTHHHHSCSS-------------EEECCCC--HHHHHHHHHHHCEECCTTS---------EEEGGGCCT
T ss_pred HHHHhcCCCCCceeECCCccE-------------EEEeCCC--HHHHHHHHHhCCEEecCCC---------eEEEecCCH
Confidence 999987 356666677777 8998884 5678888999999999952 999987 88
Q ss_pred hHHHHHHHHHHhhhC
Q 012785 442 ENYNLFVQRLSKILS 456 (456)
Q Consensus 442 e~i~~~l~~L~~~l~ 456 (456)
+++++++++|+++++
T Consensus 406 ~~i~~~~~~l~~~l~ 420 (420)
T 4f4e_A 406 RNLDVVANAIAAVLK 420 (420)
T ss_dssp TTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC
Confidence 899999999999874
No 54
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=100.00 E-value=4.9e-39 Score=334.71 Aligned_cols=405 Identities=15% Similarity=0.136 Sum_probs=283.0
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHhcCccCCCCchhhHHHHhh----hhhccccCCCceeecccccccccCCCCCCcccc
Q 012785 6 PLFSLKNLLVVSLALNVSLIWRAMHESEKCNFDSSFSLQQQRR----SVMAGCVLKEKEHVSERTHLSLSSSPSPSPSSS 81 (456)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~----~~~~~c~~~g~~~~~~~~~~~~~~~~~~~~~~~ 81 (456)
|.|-+|+.| ..++-....-...|+-|+-+|.|-....++|-- -+...+...+. +.. ..+..... ...
T Consensus 14 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~---~~~-~~g~~~~~----g~~ 84 (533)
T 3f6t_A 14 GAFEISRKM-LALAQKNEKSNIFLNAGRGNPNWIQTLARLAFVRLVQFGVTESKLTIN---NGI-MAGYINTD----GIR 84 (533)
T ss_dssp --CCCCHHH-HHHHHHCGGGHHHHHTCCCCCSCEECHHHHHHHHHHHHHHHHHTTTCE---ETT-EECCCCCT----THH
T ss_pred CcHhhHHHH-HHHHhhcCccceeeeCCCCCchhccCcHHHHHHHHHHHHHHHHHhhcC---CCC-CCCCCCch----hHH
Confidence 478888888 666644212224566799899998777776633 22233333222 100 00111110 111
Q ss_pred ccccchhhhcC------CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH
Q 012785 82 LTSTDIQSQDG------GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV 155 (456)
Q Consensus 82 ~~~~~~~~~~~------~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~ 155 (456)
........... ..++|+|+.|+|++++++++.... ..+.. ..+|.+..| .+++|+++++++..
T Consensus 85 ~~~~~~~~~~~~~g~~~~~~~i~l~~g~~~~~~~~~v~a~~--~~~~~----~~y~~~~~g-----~~~lr~~ia~~l~~ 153 (533)
T 3f6t_A 85 ERLFAFLDPDKNDEDKFLIDAVNYCHTELGLNRDKVVAEWV--NGAVA----NNYPVPDRC-----LVNTEKIINYFLQE 153 (533)
T ss_dssp HHHHHHCCTTTCHHHHHHHHHHHHHHHTTCCCHHHHHHHHH--HHHHT----CSCCSSSSC-----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcccccHhheeccCCCCCcCCcHHHHHHH--HHHHh----CCCCCCccc-----HHHHHHHHHHHHHH
Confidence 12221100000 124789999999998776665431 11221 234556678 59999999999965
Q ss_pred h-c--CccCCCceEEEccCHHHHHHHHHHH-----hcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC------
Q 012785 156 V-G--NAITENHHIVVGTGSTQLFQAALYA-----LSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD------ 221 (456)
Q Consensus 156 ~-g--~~~~~~~~I~~t~G~~~al~~~~~~-----l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d------ 221 (456)
. + ....++++|++|+|+++++.+++.+ ++++|| +|++++|+|+.+...++..|.+++.++.+
T Consensus 154 ~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~~~gd----~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 229 (533)
T 3f6t_A 154 LSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGD----KIAINEPIFTPYLRIPELKDYELVEVDLHSYEKND 229 (533)
T ss_dssp HHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTC----EEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTT
T ss_pred hcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhccCCcC----EEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccC
Confidence 4 3 3444457999999999999999998 788999 99999999999999999999988776653
Q ss_pred ----cccccc---CCCeEEEEcCCCCCCcccchH--------Hhh-hcCcEEEeeecCCCCCCC--CCC-CCCCCcEEEe
Q 012785 222 ----AKRFNK---DGPYIELVTSPNNPDGSVRQS--------VVN-RSGGILVHDLAYYWPQYT--SIT-YPADHDLMLF 282 (456)
Q Consensus 222 ----~~~l~~---~~~~~i~v~~P~NPtG~~~~~--------l~~-~~~~~iI~De~y~~~~~~--~~~-~~~~~~i~i~ 282 (456)
.+.++. .+++++++++||||||.+++. +|+ ++++++|+||+|.+..+. ++. ...+++++++
T Consensus 230 ~~~d~~~l~~~l~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~ 309 (533)
T 3f6t_A 230 WEIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVY 309 (533)
T ss_dssp SEECHHHHHHHSCTTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEE
T ss_pred CCCCHHHHHHHhCCCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEe
Confidence 333332 367899999999999999882 667 689999999999864332 211 2347899999
Q ss_pred cCccccCCCCceEEEEEEeCHHHHHHH------------------------------------HHHHhhccCcCChHHHH
Q 012785 283 TVSKSTGHAGTRIGWALVKDMEVAKKM------------------------------------TKYIELNTIGVSKDSQL 326 (456)
Q Consensus 283 S~SK~~g~~G~RiG~l~~~~~~~~~~l------------------------------------~~~~~~~~~~~s~~~q~ 326 (456)
||||.+|++|+|+||++++++++++++ .......+.+++.+.|.
T Consensus 310 S~SK~~g~~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~ 389 (533)
T 3f6t_A 310 SYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQI 389 (533)
T ss_dssp ESHHHHTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHH
T ss_pred cCcccCCCcccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHH
Confidence 999999999999999999844333332 23344557788999998
Q ss_pred HHHH-HHHhhhC----CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEee
Q 012785 327 RAAK-VLKVVSD----SCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLK 401 (456)
Q Consensus 327 ~a~~-~L~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~ 401 (456)
+++. .+..+.+ + ..+++++++++.++++++.+.+.|. .+ +.+..+.+++ |+|++
T Consensus 390 a~a~~a~~~L~~~~g~~------~~~~~~~~~~~~~~~r~~~l~~~L~-~~-~~~~~~~~g~-------------~~~~~ 448 (533)
T 3f6t_A 390 MEALFSMTHLLTSTNGG------SDDPYIDIARKLVSERYDQLHDAMQ-AP-KDETDTNTHY-------------YSLID 448 (533)
T ss_dssp HHHHHHHHHHTTCBGGG------TBCHHHHHHHHHHHHHHHHHHHHHT-CC-CCCSTTBCCS-------------EEEEE
T ss_pred HHHHHHHHHHhhhcccc------chHHHHHHHHHHHHHHHHHHHHhcC-CC-ccccCCCceE-------------EEEEe
Confidence 8432 1222210 1 1368899999999999999999997 54 5667777887 89998
Q ss_pred cCc-------------------cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC-ChhHHHHHHHHHHhhh
Q 012785 402 CEQ-------------------EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 402 ~~~-------------------~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
++. +.+.+.++++++||.+.||+.|+.+++++|||++. +++++++++++|++++
T Consensus 449 l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a~~~~e~i~~~i~~L~~~l 522 (533)
T 3f6t_A 449 IYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQANLPTEDYALIGKQVLELL 522 (533)
T ss_dssp HHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSSTTEEEEESSSSCHHHHHHHHHHHHHHH
T ss_pred hHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCCCCEEEEEEeeCCHHHHHHHHHHHHHHH
Confidence 752 23556677789999999999998778899999986 8999999999999876
No 55
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=100.00 E-value=3.2e-37 Score=312.67 Aligned_cols=327 Identities=17% Similarity=0.255 Sum_probs=249.2
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccc----cc---cCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCc--cCCC
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTI----VI---PGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNA--ITEN 163 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~----~~---~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~--~~~~ 163 (456)
..+|+|+.+++.++.+ .+.+...... +. ........|+++.| ..+|+++++++++. +|.. . ++
T Consensus 36 ~~~i~l~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g-----~~~lr~~la~~~~~~~g~~~~~-~~ 108 (428)
T 1iay_A 36 NGVIQMGLAENQLCLD-LIEDWIKRNPKGSICSEGIKSFKAIANFQDYHG-----LPEFRKAIAKFMEKTRGGRVRF-DP 108 (428)
T ss_dssp TSBEECSSCCCCSSHH-HHHHHHHHCTTSSTTC----CHHHHHHCCCTTC-----CHHHHHHHHHHHHHHTTTCSCC-CT
T ss_pred CceeeeccccchhhHH-HHHHHHHhccccccccccccccHhhcCCCCCCC-----cHHHHHHHHHHHHHhcCCCCCC-Ch
Confidence 4689999988877654 3332211000 00 11112357888888 59999999999974 4533 3 35
Q ss_pred ceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh-hhcCCeEeeeccC--------cccccc-------
Q 012785 164 HHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT-DCVKSRLYKWAGD--------AKRFNK------- 227 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~-~~~g~~~~~~~~d--------~~~l~~------- 227 (456)
++|++|+|+++++.+++++++.+|| +|++++|+|+.+...+ ...|.+++.++.+ .+.++.
T Consensus 109 ~~i~~~~G~~~ai~~~~~~~~~~gd----~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 184 (428)
T 1iay_A 109 ERVVMAGGATGANETIIFCLADPGD----AFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQK 184 (428)
T ss_dssp TSCEEEEHHHHHHHHHHHHHCCTTC----EEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHH
T ss_pred hhEEEccChHHHHHHHHHHhCCCCC----eEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHh
Confidence 7999999999999999999999999 9999999999998755 4679998877654 233321
Q ss_pred --CCCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCC-----CCC---CC-------CCCcEEEe
Q 012785 228 --DGPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYT-----SIT---YP-------ADHDLMLF 282 (456)
Q Consensus 228 --~~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~-----~~~---~~-------~~~~i~i~ 282 (456)
.+++++++++||||||.+++. +|+++|+++|+||+|.+..+. ++. .. .++++++.
T Consensus 185 ~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~ 264 (428)
T 1iay_A 185 SNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVY 264 (428)
T ss_dssp TTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEE
T ss_pred cCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEe
Confidence 157889999999999999882 788999999999999863222 211 12 57889999
Q ss_pred cCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHH
Q 012785 283 TVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWK 362 (456)
Q Consensus 283 S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 362 (456)
||||.+|++|+|+||++++++++++.+.+... .+++++++|.++.++|+. .. ..++++++.++.++++++
T Consensus 265 s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~---~~-----~~~~~~~~~~~~~~~~~~ 334 (428)
T 1iay_A 265 SLSKDMGLPGFRVGIIYSFNDDVVNCARKMSS--FGLVSTQTQYFLAAMLSD---EK-----FVDNFLRESAMRLGKRHK 334 (428)
T ss_dssp ESTTTSSCGGGCEEEEEESCHHHHHHHHHHHT--TSCCCHHHHHHHHHHTTC---HH-----HHHHHHHHHHHHHHHHHH
T ss_pred cchhhcCCCCceEEEEEeCCHHHHHHHHHHHh--cccCCHHHHHHHHHHhcC---hH-----HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999965889988887643 467899999999998872 10 013478889999999999
Q ss_pred HHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--------cHHHHHHHHHh-CCEEeecCCCCCC-CCCe
Q 012785 363 QLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--------EIEDCESFLKG-NKILTRSGKHFGF-SPKY 432 (456)
Q Consensus 363 ~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--------~~~~~~~~l~~-~gI~v~pg~~fg~-~~~~ 432 (456)
.+.+.|++++ +.+.++.+++ |+|++++. ....+.+.|.+ +||.++||..|+. .+++
T Consensus 335 ~l~~~L~~~g-~~~~~~~~g~-------------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~ 400 (428)
T 1iay_A 335 HFTNGLEVVG-IKCLKNNAGL-------------FCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGW 400 (428)
T ss_dssp HHHHHHHHTT-CCBCCCSSSS-------------EEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSE
T ss_pred HHHHHHHhcC-CcccCCCeeE-------------EEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCE
Confidence 9999999874 5555554555 89999864 23356666665 5999999999874 3689
Q ss_pred EEEEec-CChhHHHHHHHHHHhhh
Q 012785 433 VRISML-DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 433 iRis~~-~~~e~i~~~l~~L~~~l 455 (456)
+||+++ .+++++++++++|++++
T Consensus 401 iRis~~~~~~e~i~~~~~~l~~~l 424 (428)
T 1iay_A 401 FRVCFANMDDGTVDIALARIRRFV 424 (428)
T ss_dssp EEEECSSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHH
Confidence 999998 59999999999999876
No 56
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=100.00 E-value=6.5e-38 Score=317.25 Aligned_cols=324 Identities=17% Similarity=0.218 Sum_probs=261.5
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccC
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTG 171 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G 171 (456)
++++|||+.|+++++.++.+.++.... +... ...|++.. .++++++++++.. ++.... +++|++|+|
T Consensus 60 g~~~i~~~~~~~~~~~~~~v~~a~~~~-~~~~---~~~y~~~~-------~~l~~~l~~~l~~~~g~~~~-~~~v~~~~g 127 (421)
T 3l8a_A 60 NPELLQMWVADMDFLPVPEIKEAIINY-GREH---IFGYNYFN-------DDLYQAVIDWERKEHDYAVV-KEDILFIDG 127 (421)
T ss_dssp CTTCEECCSSCCCSCCCHHHHHHHHHH-HHHC---CSSCBCCC-------HHHHHHHHHHHHHHHCCCCC-GGGEEEESC
T ss_pred CCCeeecccCCCCCCCCHHHHHHHHHH-HhcC---CcCCCCCC-------HHHHHHHHHHHHHHhCCCCC-HHHEEEcCC
Confidence 678999999999998877666542211 2222 23466543 8999999999854 565554 579999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc---------Ccccccc----CCCeEEEEcCC
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG---------DAKRFNK----DGPYIELVTSP 238 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~---------d~~~l~~----~~~~~i~v~~P 238 (456)
++++++.+++++.++|| +|+++.|+|+++...++..|.+++.++. |.+.++. .+++++++++|
T Consensus 128 ~~ea~~~a~~~~~~~gd----~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p 203 (421)
T 3l8a_A 128 VVPAISIALQAFSEKGD----AVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSP 203 (421)
T ss_dssp HHHHHHHHHHHHSCTEE----EEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESS
T ss_pred HHHHHHHHHHHhcCCCC----EEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCC
Confidence 99999999999999999 9999999999999999999998876654 4454443 46899999999
Q ss_pred CCCCcccch--------HHhhhcCcEEEeeecCCCCCCC-----CCC----CCCCCcEEEecCccccCCCCceEEEEEEe
Q 012785 239 NNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT-----SIT----YPADHDLMLFTVSKSTGHAGTRIGWALVK 301 (456)
Q Consensus 239 ~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~-----~~~----~~~~~~i~i~S~SK~~g~~G~RiG~l~~~ 301 (456)
|||||.+++ ++|+++|+++|+||+|.+..+. ++. +..++++++.|+||.+|++|+|+||++++
T Consensus 204 ~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~ 283 (421)
T 3l8a_A 204 HNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQ 283 (421)
T ss_dssp BTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcC
Confidence 999999976 2799999999999999863322 221 12367899999999999999999999997
Q ss_pred CHHHHHHHHHHHh-hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC
Q 012785 302 DMEVAKKMTKYIE-LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELP 380 (456)
Q Consensus 302 ~~~~~~~l~~~~~-~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 380 (456)
++++++.+..... ....+.++++|.++.++|+. . ++++++.++.++++++.+.+.|++++.+.+.++.
T Consensus 284 ~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~---~--------~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~ 352 (421)
T 3l8a_A 284 NESLRRKFQYRQLANNQHEVPTVGMIATQAAFQY---G--------KPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPE 352 (421)
T ss_dssp SHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHH---C--------HHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECCS
T ss_pred CHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhc---c--------HHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCCC
Confidence 7899999988763 34558899999999998872 2 6789999999999999999999987667777888
Q ss_pred CcccccccccCCCCCceEEeecCc---cHHHHHHHH-HhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 381 SQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFL-KGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 381 g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l-~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|++ ++|++++. +.+.+.+.| +++||.+.||..|+. +++++||+++.+++++++++++|++++
T Consensus 353 ~~~-------------~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~i~~~l~~l~~~l 419 (421)
T 3l8a_A 353 GTY-------------LVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVATPKNTVQEALSRIISVF 419 (421)
T ss_dssp BSS-------------EEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred eeE-------------EEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 877 78898864 445566656 577999999999974 579999999889999999999999886
Q ss_pred C
Q 012785 456 S 456 (456)
Q Consensus 456 ~ 456 (456)
+
T Consensus 420 ~ 420 (421)
T 3l8a_A 420 G 420 (421)
T ss_dssp -
T ss_pred h
Confidence 4
No 57
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=100.00 E-value=1.3e-37 Score=316.39 Aligned_cols=329 Identities=19% Similarity=0.275 Sum_probs=252.2
Q ss_pred CCCCeEEecCCCCCCCchhHhhhccccccccc-----C---ccccccccCCCCcccCCCHHHHHHHHHHHHHh-c--Ccc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIP-----G---WQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVV-G--NAI 160 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~-----~---~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~-g--~~~ 160 (456)
++..+|+|+.+...+..+.+.... ....... + ......|++..| .++||++++++++.. + ...
T Consensus 36 ~p~~~i~lg~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~y~~~~g-----~~~l~~~la~~~~~~~~~~~~~ 109 (435)
T 3piu_A 36 NTNGIIQMGLAENQLCFDLLESWL-AKNPEAAAFKKNGESIFAELALFQDYHG-----LPAFKKAMVDFMAEIRGNKVTF 109 (435)
T ss_dssp BTTSBEECSSCCCCSSHHHHHHHH-HHCTTGGGTEETTEECHHHHHHCCCTTC-----CHHHHHHHHHHHHHHTTTSSCC
T ss_pred CCCCeEEeccccccccHHHHHHHH-HhCccccccccccccccccccccCCCCC-----cHHHHHHHHHHHHHhhCCCCCC
Confidence 445789999998877755433321 1110000 0 011246888888 599999999999742 2 233
Q ss_pred CCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhh-hcCCeEeeeccC--------cccccc----
Q 012785 161 TENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITD-CVKSRLYKWAGD--------AKRFNK---- 227 (456)
Q Consensus 161 ~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~-~~g~~~~~~~~d--------~~~l~~---- 227 (456)
++++|++|+|+++++..++.+++++|| +|++++|+|+.+...+. ..|.+++.++.+ .+.++.
T Consensus 110 -~~~~v~~~~gg~~a~~~~~~~l~~~gd----~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~ 184 (435)
T 3piu_A 110 -DPNHLVLTAGATSANETFIFCLADPGE----AVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQE 184 (435)
T ss_dssp -CGGGEEEEEHHHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHH
T ss_pred -CHHHEEEcCChHHHHHHHHHHhcCCCC----eEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHH
Confidence 357999999999999999999999999 99999999999998888 789999877654 333432
Q ss_pred -----CCCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCC-----CCC---CC---------CCC
Q 012785 228 -----DGPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYT-----SIT---YP---------ADH 277 (456)
Q Consensus 228 -----~~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~-----~~~---~~---------~~~ 277 (456)
.++++|++++||||||.+++. +|+++|+++|+||+|.+..+. ++. .. .++
T Consensus 185 ~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 264 (435)
T 3piu_A 185 AEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQR 264 (435)
T ss_dssp HHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGG
T ss_pred HHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCC
Confidence 167899999999999999872 689999999999999852222 111 11 567
Q ss_pred cEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHH
Q 012785 278 DLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQM 357 (456)
Q Consensus 278 ~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~ 357 (456)
+++++||||.+|++|+|+||++++++.+.+.+.+... ..+.+++.|.++.+++.. .. ..++++++.++++
T Consensus 265 ~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~---~~-----~~~~~~~~~~~~~ 334 (435)
T 3piu_A 265 VHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQHLLSAMLSD---KK-----LTKNYIAENHKRL 334 (435)
T ss_dssp EEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGG--GSCCCHHHHHHHHHHHHC---HH-----HHHHHHHHHHHHH
T ss_pred EEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHhh--cCCCCHHHHHHHHHHhcC---hH-----HHHHHHHHHHHHH
Confidence 8999999999999999999999976888888876654 567889999999998872 20 0144678889999
Q ss_pred HHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--------cHHHHHHHH-HhCCEEeecCCCCCC
Q 012785 358 STRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--------EIEDCESFL-KGNKILTRSGKHFGF 428 (456)
Q Consensus 358 ~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--------~~~~~~~~l-~~~gI~v~pg~~fg~ 428 (456)
+++++.+.+.|++.+ +.+..+.+++ |+|+.++. ....+.+.| +++||.+.||..|+.
T Consensus 335 ~~~~~~l~~~L~~~g-~~~~~~~~g~-------------~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~ 400 (435)
T 3piu_A 335 KQRQKKLVSGLQKSG-ISCLNGNAGL-------------FCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHC 400 (435)
T ss_dssp HHHHHHHHHHHHTTT-CEECCCCSSS-------------EEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC
T ss_pred HHHHHHHHHHHHhcC-CcccCCCeeE-------------EEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCC
Confidence 999999999999874 5666666666 89999864 233455555 455999999999974
Q ss_pred -CCCeEEEEecC-ChhHHHHHHHHHHhhh
Q 012785 429 -SPKYVRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 429 -~~~~iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
.++++||+++. +++++++++++|++++
T Consensus 401 ~~~~~iRi~~~~~~~e~i~~~l~~l~~~l 429 (435)
T 3piu_A 401 TEPGWFRVCFANLPERTLDLAMQRLKAFV 429 (435)
T ss_dssp SSTTEEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeeCCCHHHHHHHHHHHHHHH
Confidence 67899999987 8999999999999876
No 58
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=100.00 E-value=9.9e-38 Score=316.65 Aligned_cols=320 Identities=15% Similarity=0.127 Sum_probs=251.6
Q ss_pred CCeEEecCCCC-CCCchhHh--hhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCce---EE
Q 012785 94 ERIINVDHGDP-TMYEKYWQ--KVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHH---IV 167 (456)
Q Consensus 94 ~~~i~l~~g~p-~~~~~~~~--~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~---I~ 167 (456)
+.+|||+.|+| ++..++.+ .+... ..+.. .....|++..| .++||+++++++...+... ++++ |+
T Consensus 47 ~~~i~l~~g~~~~~~~~~~~~~~~a~~-~~~~~--~~~~~y~~~~g-----~~~lr~~ia~~~~~~~~~~-~~~~~~~i~ 117 (430)
T 2x5f_A 47 STTYNATIGMATNKDGKMFASSLDAMF-NDLTP--DEIFPYAPPQG-----IEELRDLWQQKMLRDNPEL-SIDNMSRPI 117 (430)
T ss_dssp TCSEECCCSSCEETTEECCCHHHHTTB-SSCCG--GGTSSCCCTTC-----CHHHHHHHHHHHHHHCTTC-CGGGBCCCE
T ss_pred CCcEEeeeeeccCCCCchhhHHHHHHH-HhcCc--ccccccCCCCC-----CHHHHHHHHHHHhccCccc-CCCccceEE
Confidence 46799999999 77665544 32211 11211 12356888878 5999999999997665333 3567 99
Q ss_pred EccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhh-cCCeEeeeccCc-------ccccc---C---CCeEE
Q 012785 168 VGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDC-VKSRLYKWAGDA-------KRFNK---D---GPYIE 233 (456)
Q Consensus 168 ~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~-~g~~~~~~~~d~-------~~l~~---~---~~~~i 233 (456)
+|+|+++++++++++++++|| +|++++|+|+.+...++. .|.+++.++.+. +.++. . +++++
T Consensus 118 ~t~g~~~al~~~~~~l~~~gd----~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v 193 (430)
T 2x5f_A 118 VTNALTHGLSLVGDLFVNQDD----TILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIM 193 (430)
T ss_dssp EESHHHHHHHHHHHHHCCTTC----EEEEESSCCTHHHHHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHCCSSEEEE
T ss_pred EcCCchHHHHHHHHHHhCCCC----EEEEcCCcCccHHHHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhcCCCCEEE
Confidence 999999999999999999999 999999999999999999 999988776543 33322 1 56889
Q ss_pred EEcCCCCCCcccch--------HHhhh-----cCcEEEeeecCCCCCCC-----CCC----CCCCC---cEEEecCcccc
Q 012785 234 LVTSPNNPDGSVRQ--------SVVNR-----SGGILVHDLAYYWPQYT-----SIT----YPADH---DLMLFTVSKST 288 (456)
Q Consensus 234 ~v~~P~NPtG~~~~--------~l~~~-----~~~~iI~De~y~~~~~~-----~~~----~~~~~---~i~i~S~SK~~ 288 (456)
++++||||||.+++ ++|++ +|+++|+||+|.+..+. ++. ...++ +++++||||.+
T Consensus 194 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 273 (430)
T 2x5f_A 194 ILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEF 273 (430)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHT
T ss_pred EEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCC
Confidence 99999999999988 27889 99999999999864322 221 22567 89999999999
Q ss_pred CCCCceEEEEEE---eCHHHHHHHHHHHhh----ccCcCChHHHHHHHHHHH-hhhCCCCCCCCcchhHHHHHHHHHHHH
Q 012785 289 GHAGTRIGWALV---KDMEVAKKMTKYIEL----NTIGVSKDSQLRAAKVLK-VVSDSCKPSGSEDECFFEFTNHQMSTR 360 (456)
Q Consensus 289 g~~G~RiG~l~~---~~~~~~~~l~~~~~~----~~~~~s~~~q~~a~~~L~-~~~~~~~~~~~~~~~~l~~~~~~~~~~ 360 (456)
|++|+|+||+++ + +++++.+...... .+++++++.|.++.++|+ .. . +.+++++.++.++++
T Consensus 274 ~~~G~riG~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~-------~~~~~~~~~~~~~~~ 343 (430)
T 2x5f_A 274 FAWGFRVGFMTFGTSD-QTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNK--Q-------FDKEIEQNIQTLKER 343 (430)
T ss_dssp TCGGGCCEEEEEBCCC-HHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCH--H-------HHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEEecCC-HHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccCh--H-------HHHHHHHHHHHHHHH
Confidence 999999999999 6 9999999887655 678899999999999887 41 1 244556699999999
Q ss_pred HHHHHHHHH----hcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHh-CCEEeecCCCCCCCCCeEE
Q 012785 361 WKQLRMAVQ----KSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKG-NKILTRSGKHFGFSPKYVR 434 (456)
Q Consensus 361 ~~~l~~~L~----~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~-~gI~v~pg~~fg~~~~~iR 434 (456)
++.+.+.|+ +. ++.+..+.+++ |+|+++++ +...+.+.|.+ +||.++|| .++++|
T Consensus 344 ~~~l~~~L~~~~~~~-g~~~~~~~~g~-------------~~~~~~~~~~~~~~~~~l~~~~gi~v~~g-----~~~~iR 404 (430)
T 2x5f_A 344 YEVTKEVVYADQYHS-HWQAYDFNSGY-------------FMAIKVHDVDPEALRKHLIDKYSIGVIAL-----NATDIR 404 (430)
T ss_dssp HHHHHHHHTCGGGTT-TEEECCCCBSS-------------EEEEEESSSCHHHHHHHHHHHHCEECEEC-----SSSEEE
T ss_pred HHHHHHHHHhhCCCC-CceeeCCCceE-------------EEEeCCCCCCHHHHHHHHHHhCCEEEecC-----CCCeEE
Confidence 999999998 44 35666666666 89999862 45566666666 99999997 368999
Q ss_pred EEec-CChhHHHHHHHHHHhhh
Q 012785 435 ISML-DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 435 is~~-~~~e~i~~~l~~L~~~l 455 (456)
|+++ .+++++++++++|++++
T Consensus 405 is~~~~~~e~i~~~~~~l~~~l 426 (430)
T 2x5f_A 405 IAFSCVEKDDIPHVFDSIAKAI 426 (430)
T ss_dssp EEGGGSCGGGHHHHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHHHH
Confidence 9998 68899999999999876
No 59
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=100.00 E-value=1.1e-37 Score=314.97 Aligned_cols=322 Identities=14% Similarity=0.131 Sum_probs=246.4
Q ss_pred CCCeEEecCCCC-----CCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEE
Q 012785 93 GERIINVDHGDP-----TMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIV 167 (456)
Q Consensus 93 ~~~~i~l~~g~p-----~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~ 167 (456)
+.++|+|++|+| ++++++.+.++.. . ... .....|++..| .++||+++++++.....+. .+++|+
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~-~-~~~--~~~~~y~~~~g-----~~~lr~~ia~~~~~~~~~~-~~~~i~ 106 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLVFLKTVKEEYL-S-LSD--SEHVGYAPIAG-----IPDFLCAAEKECFGNFRPE-GHIRSI 106 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBCCCHHHHHHHH-T-CCH--HHHHSCCCTTC-----CHHHHHHHHHHHHGGGCCS-SEEEEE
T ss_pred CCCeEECCCCcccCCCCCccccHHHHHHHH-H-hcc--cccCCCCCCCC-----hHHHHHHHHHHHhcccCcc-ccccEE
Confidence 558899999987 6666665554321 1 111 11246888888 5999999999985432111 124999
Q ss_pred EccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC-------cccccc---C----CCe-E
Q 012785 168 VGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD-------AKRFNK---D----GPY-I 232 (456)
Q Consensus 168 ~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d-------~~~l~~---~----~~~-~ 232 (456)
+|+|+++++.+++++++++|| +|++++|+|+.+...++..|.+++.++.+ .+.++. . +++ +
T Consensus 107 ~t~g~~~al~~~~~~l~~~gd----~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 182 (418)
T 3rq1_A 107 ATAGGTGGIHHLIHNYTEPGD----EVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVV 182 (418)
T ss_dssp EESHHHHHHHHHHHHHSCTTC----EEEEESSCCTHHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEE
T ss_pred ECCchHHHHHHHHHHhcCCCC----EEEECCCCchhHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEE
Confidence 999999999999999999999 99999999999999999999999887753 333322 1 455 7
Q ss_pred EEEcCC-CCCCcccchH--------Hhh------hcCcEEEeeecCCCCCCC-----CC----CCCCCC--cEEEecCcc
Q 012785 233 ELVTSP-NNPDGSVRQS--------VVN------RSGGILVHDLAYYWPQYT-----SI----TYPADH--DLMLFTVSK 286 (456)
Q Consensus 233 i~v~~P-~NPtG~~~~~--------l~~------~~~~~iI~De~y~~~~~~-----~~----~~~~~~--~i~i~S~SK 286 (456)
+++++| |||||.+++. +|+ ++|+++|+||+|.+..+. ++ ....++ +|+++||||
T Consensus 183 vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK 262 (418)
T 3rq1_A 183 VIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSK 262 (418)
T ss_dssp EEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTT
T ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCC
Confidence 889999 9999999882 555 899999999999753332 11 122344 588999999
Q ss_pred ccCCCCceEEEEEE---eCHHHHHHHHHHHhhc----cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHH
Q 012785 287 STGHAGTRIGWALV---KDMEVAKKMTKYIELN----TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMST 359 (456)
Q Consensus 287 ~~g~~G~RiG~l~~---~~~~~~~~l~~~~~~~----~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~ 359 (456)
.+|++|+|+||+++ + +++++.+....... ..+++.++|.++..+|+....-. .+.++++++++.+++
T Consensus 263 ~~~~~G~r~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~-----~~~~~~~~~~~~~~~ 336 (418)
T 3rq1_A 263 GFTMYGQRVGAMIGISDD-EEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFK-----EYEAERNCYYQLIRD 336 (418)
T ss_dssp TTTCCSSCCEEEEEEESS-HHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHH-----HHHHHHHHHHHHHHH
T ss_pred CCcCcCCcceEEEEEeCC-HHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHH-----HHHHHHHHHHHHHHH
Confidence 99999999999998 5 89999888765432 25689999999999887210000 023455677889999
Q ss_pred HHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC
Q 012785 360 RWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD 439 (456)
Q Consensus 360 ~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~ 439 (456)
+++.+.+.|++++ +.+..+.+++ |+|++++ +.+.+.+.|+++||.++|| ++++||+++.
T Consensus 337 ~~~~l~~~L~~~g-~~~~~~~~~~-------------~~~~~~~-~~~~~~~~l~~~gi~v~~g------~~~iRis~~~ 395 (418)
T 3rq1_A 337 RADIFKQEAAQVG-LPMLPYRGGF-------------FITIPTD-SANAICEELKKEHIYVIAL------ANGIRIAACG 395 (418)
T ss_dssp HHHHHHHHHHHHT-CCCCCCCSSS-------------EEEEECT-THHHHHHHHHHTTEECEEC------SSEEEEEGGG
T ss_pred HHHHHHHHHHhcC-CCCCCCCceE-------------EEEcCCC-CHHHHHHHHHhCCEEEecC------CCCeEEEEec
Confidence 9999999999874 6777777877 8998886 4556667889999999996 4689999985
Q ss_pred -ChhHHHHHHHHHHhhh
Q 012785 440 -RDENYNLFVQRLSKIL 455 (456)
Q Consensus 440 -~~e~i~~~l~~L~~~l 455 (456)
+++++++++++|++++
T Consensus 396 ~~~~~i~~~~~~l~~~l 412 (418)
T 3rq1_A 396 IPKCQMTGLAEKIYNAM 412 (418)
T ss_dssp SCHHHHTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 9999999999999876
No 60
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=100.00 E-value=1.8e-37 Score=307.90 Aligned_cols=314 Identities=16% Similarity=0.169 Sum_probs=253.4
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCH
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGS 172 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~ 172 (456)
++.+|||+.|+++++.++.+.+... ..+... ....|++. | ..+||++++++++. . ++++|++|+|+
T Consensus 29 ~~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~--~~~~y~~~-~-----~~~l~~~la~~~g~---~--~~~~i~~~~g~ 94 (367)
T 3euc_A 29 SHGLVKLDAMENPYRLPPALRSELA-ARLGEV--ALNRYPVP-S-----SEALRAKLKEVMQV---P--AGMEVLLGNGS 94 (367)
T ss_dssp CTTCEECCSSCCCCCCCHHHHHHHH-HHHHHH--HTTCSCCC-C-----HHHHHHHHHHHHTC---C--TTCEEEEEEHH
T ss_pred CCCeeEccCCCCCCCCCHHHHHHHH-HHhhhh--hhhcCCCC-c-----HHHHHHHHHHHhCC---C--CcceEEEcCCH
Confidence 4578999999999887766654322 112111 13457764 5 49999999999852 1 35799999999
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC------cccccc---C-CCeEEEEcCCCCCC
Q 012785 173 TQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD------AKRFNK---D-GPYIELVTSPNNPD 242 (456)
Q Consensus 173 ~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d------~~~l~~---~-~~~~i~v~~P~NPt 242 (456)
++++++++++++++|| +|+++.|+|+.+...++..|.+++.++.| .+.++. . +++++++++|||||
T Consensus 95 t~a~~~~~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~npt 170 (367)
T 3euc_A 95 DEIISMLALAAARPGA----KVMAPVPGFVMYAMSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPT 170 (367)
T ss_dssp HHHHHHHHHHTCCTTC----EEEEEESCSCCSCHHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTT
T ss_pred HHHHHHHHHHHcCCCC----EEEEcCCCHHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCC
Confidence 9999999999999999 99999999999999999999999877654 344432 2 68899999999999
Q ss_pred cccchH--------Hhhhc--CcEEEeeecCCCCCCCC---CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHH
Q 012785 243 GSVRQS--------VVNRS--GGILVHDLAYYWPQYTS---ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKM 309 (456)
Q Consensus 243 G~~~~~--------l~~~~--~~~iI~De~y~~~~~~~---~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l 309 (456)
|.+++. +|+++ |+++|+||+|.+....+ .....+++++++||||. +++|+|+||++++ +++++.+
T Consensus 171 G~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~-~~~~~~~ 248 (367)
T 3euc_A 171 GNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKL-GLAGIRLGYVAGD-PQWLEQL 248 (367)
T ss_dssp CCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCT-TSCSCCEEEEEEC-HHHHHHH
T ss_pred CCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhh-cccccCceeeeeC-HHHHHHH
Confidence 999862 68889 99999999998643222 22445788999999999 8999999999996 9999888
Q ss_pred HHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccc
Q 012785 310 TKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGR 389 (456)
Q Consensus 310 ~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~ 389 (456)
..... +++.+++.|.++.++|+. .+++++.+++++++++.+.+.|++++++.+. +.
T Consensus 249 ~~~~~--~~~~~~~~~~a~~~~l~~------------~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~--------- 304 (367)
T 3euc_A 249 DKVRP--PYNVNVLTEATALFALEH------------VAVLDEQAAQLRAERSRVAEGMAAHGGVTVF-PS--------- 304 (367)
T ss_dssp GGGCC--SSCCCHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHHHHHHHHHTSTTCEEC-CC---------
T ss_pred HHhCC--CCCCCHHHHHHHHHHhcC------------HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CC---------
Confidence 77654 678999999999999972 5678899999999999999999987555533 22
Q ss_pred cCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 390 AFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 390 ~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
.++|+|++++ +.+.+.+.|.++||.+++|..|+. .++++||+++ +++++++++++|+++++
T Consensus 305 ----~~~~~~~~~~-~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 305 ----AANFLLARVP-DAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS-TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp ----SSSEEEEECS-CHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred ----CCeEEEEECC-CHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC-CHHHHHHHHHHHHHHhc
Confidence 3338999988 667788889999999999998853 5789999995 88999999999999874
No 61
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=100.00 E-value=9.3e-38 Score=313.47 Aligned_cols=322 Identities=17% Similarity=0.168 Sum_probs=251.9
Q ss_pred CCCeEEecCCCCCCC--chhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEcc
Q 012785 93 GERIINVDHGDPTMY--EKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGT 170 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~--~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~ 170 (456)
++.+|||+.|.|+.. +++.+.+... ..+.........|++..| ..+||++++++++. ++++|++|+
T Consensus 31 ~~~~i~l~~g~~~~~~~~~~~v~~a~~-~~~~~~~~~~~~y~~~~~-----~~~l~~~la~~~g~------~~~~v~~~~ 98 (397)
T 2zyj_A 31 RPGILSFAGGLPAPELFPKEEAAEAAA-RILREKGEVALQYSPTEG-----YAPLRAFVAEWIGV------RPEEVLITT 98 (397)
T ss_dssp STTCEEESSCCCCGGGCCHHHHHHHHH-HHHHHHHHHHTSCCCTTC-----CHHHHHHHHHHHTS------CGGGEEEES
T ss_pred CCCceecCCCCCCchhCCHHHHHHHHH-HHHHhcchhhhCCCCCCC-----CHHHHHHHHHHhCC------ChhhEEEec
Confidence 457899999987642 2333332211 112211111235777677 59999999999942 457999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-----Ccccccc----CCCeEE-EEcCCCC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-----DAKRFNK----DGPYIE-LVTSPNN 240 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-----d~~~l~~----~~~~~i-~v~~P~N 240 (456)
|+++++.++++++.++|| +|+++.|+|+.+...++..|.+++.++. |.+.++. .+++++ ++++|||
T Consensus 99 g~~~al~~~~~~~~~~gd----~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~~n 174 (397)
T 2zyj_A 99 GSQQALDLVGKVFLDEGS----PVLLEAPSYMGAIQAFRLQGPRFLTVPAGEEGPDLDALEEVLKRERPRFLYLIPSFQN 174 (397)
T ss_dssp HHHHHHHHHHHHHCCTTC----EEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHHCCCSCEEECCBSCT
T ss_pred cHHHHHHHHHHHhCCCCC----EEEEeCCCcHHHHHHHHHcCCEEEecCcCCCCCCHHHHHHHHhhcCCeEEEECCCCcC
Confidence 999999999999999999 9999999999999999999999987775 3444432 256776 5789999
Q ss_pred CCcccch--------HHhhhcCcEEEeeecCCCCCCCC-----CC--CCC---CCcEEEecCccccCCCCceEEEEEEeC
Q 012785 241 PDGSVRQ--------SVVNRSGGILVHDLAYYWPQYTS-----IT--YPA---DHDLMLFTVSKSTGHAGTRIGWALVKD 302 (456)
Q Consensus 241 PtG~~~~--------~l~~~~~~~iI~De~y~~~~~~~-----~~--~~~---~~~i~i~S~SK~~g~~G~RiG~l~~~~ 302 (456)
|||.+++ ++|+++|+++|+||+|.+..+.+ +. ... +++++++|+||.+| +|+|+||++++
T Consensus 175 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~- 252 (397)
T 2zyj_A 175 PTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFAVAH- 252 (397)
T ss_dssp TTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCCEEEECC-
T ss_pred CCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccc-ccceeEEEecC-
Confidence 9999987 27889999999999998643321 11 112 67899999999999 99999999997
Q ss_pred HHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc-C-CccccCCC
Q 012785 303 MEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS-G-LFSVPELP 380 (456)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~-~~~~~~~~ 380 (456)
+++++.+.......+++++++.|.++.++|+ ++ .. +++++.++.++++++.+.+.|++. + ++.+..|.
T Consensus 253 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~---~~------~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~ 322 (397)
T 2zyj_A 253 PEALQKLVQAKQGADLHTPMLNQMLVHELLK---EG------FS-ERLERVRRVYREKAQAMLHALDREVPKEVRYTRPK 322 (397)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHT---TT------HH-HHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCS
T ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH---hC------CH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCC
Confidence 9999999887776678889999999999887 22 12 678899999999999999999874 4 36665566
Q ss_pred CcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCC---CCCeEEEEecC-ChhHHHHHHHHHHhh
Q 012785 381 SQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGF---SPKYVRISMLD-RDENYNLFVQRLSKI 454 (456)
Q Consensus 381 g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~---~~~~iRis~~~-~~e~i~~~l~~L~~~ 454 (456)
+++ |+|++++. +...+.+.|.++||.++||..|+. .++++||+++. +++++++++++|+++
T Consensus 323 ~g~-------------~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~ 389 (397)
T 2zyj_A 323 GGM-------------FVWMELPKGLSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRLGRA 389 (397)
T ss_dssp BSS-------------EEEEECSTTCCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHHHHHH
T ss_pred ccE-------------EEEEEcCCCCCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 665 89999864 466777888888999999999963 46899999987 789999999999887
Q ss_pred h
Q 012785 455 L 455 (456)
Q Consensus 455 l 455 (456)
+
T Consensus 390 l 390 (397)
T 2zyj_A 390 L 390 (397)
T ss_dssp H
T ss_pred H
Confidence 5
No 62
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=100.00 E-value=7.9e-38 Score=308.80 Aligned_cols=310 Identities=16% Similarity=0.238 Sum_probs=249.8
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccC
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTG 171 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G 171 (456)
.++.+|||+.|++++++++.+.+.... .+. ....|++. | .++||++++++++. ++++|++|+|
T Consensus 14 ~~~~~i~l~~~~~~~~~~~~v~~a~~~-~~~----~~~~y~~~-~-----~~~l~~~la~~~~~------~~~~i~~~~g 76 (354)
T 3ly1_A 14 STDNPIRINFNENPLGMSPKAQAAARD-AVV----KANRYAKN-E-----ILMLGNKLAAHHQV------EAPSILLTAG 76 (354)
T ss_dssp CSSSCEECSSCCCSSCCCHHHHHHHHH-TGG----GTTSCCHH-H-----HHHHHHHHHHHTTS------CGGGEEEESH
T ss_pred CCCceEEccCCCCCCCCCHHHHHHHHH-HHh----hCcCCCCC-c-----hHHHHHHHHHHhCC------ChHHEEEeCC
Confidence 456789999999998777666554221 111 23456553 5 48999999999863 4579999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC------cccccc-----CCCeEEEEcCCCC
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD------AKRFNK-----DGPYIELVTSPNN 240 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d------~~~l~~-----~~~~~i~v~~P~N 240 (456)
++++++++++++.++|| +|+++.|+|+.+...++..|.+++.++.| .+.++. .+++++++++|||
T Consensus 77 ~~~a~~~~~~~l~~~gd----~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~n 152 (354)
T 3ly1_A 77 SSEGIRAAIEAYASLEA----QLVIPELTYGDGEHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNN 152 (354)
T ss_dssp HHHHHHHHHHHHCCTTC----EEEEESSSCTHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCT
T ss_pred hHHHHHHHHHHHhCCCC----eEEECCCCchHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCC
Confidence 99999999999999999 99999999999999999999999887765 333332 4689999999999
Q ss_pred CCcccchH-----Hhhh--cCcEEEeeecCCCCCCCC----C---CCCC-CCcEEEecCccccCCCCceEEEEEEeCHHH
Q 012785 241 PDGSVRQS-----VVNR--SGGILVHDLAYYWPQYTS----I---TYPA-DHDLMLFTVSKSTGHAGTRIGWALVKDMEV 305 (456)
Q Consensus 241 PtG~~~~~-----l~~~--~~~~iI~De~y~~~~~~~----~---~~~~-~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~ 305 (456)
|||.+++. +++. +|+++|+||+|.+..+.+ . .... +++++++||||.+|++|+|+||++++ +++
T Consensus 153 ptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~ 231 (354)
T 3ly1_A 153 PTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAH-PTV 231 (354)
T ss_dssp TTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECC-HHH
T ss_pred CcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecC-HHH
Confidence 99999872 5544 999999999998533321 1 1223 78999999999999999999999996 999
Q ss_pred HHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccc
Q 012785 306 AKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCT 385 (456)
Q Consensus 306 ~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~ 385 (456)
++.+..... .++++++.|.++.++|+ + .+++++.+++++++++.+.+.|++++ +.+.++
T Consensus 232 ~~~~~~~~~--~~~~~~~~~~a~~~~l~---~---------~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~------ 290 (354)
T 3ly1_A 232 IALMGRYVA--GEKINFSGVDAALASMN---D---------SAFITYSKKSNDVSRQILLKALEDLK-LPYLPS------ 290 (354)
T ss_dssp HHHHGGGTT--CSCCCHHHHHHHHHHTT---C---------HHHHHHHHHHHHHHHHHHHHHHHHHT-CCBCCC------
T ss_pred HHHHHHhcC--CCCCCHHHHHHHHHHhc---C---------HHHHHHHHHHHHHHHHHHHHHHHHCC-CeECCC------
Confidence 999888765 47899999999999887 2 46888999999999999999999874 444332
Q ss_pred cccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 386 FLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 386 ~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
.++|+|++++.+.+.+.+.|.++||.++ |..++ .++++||+++ +++++++++++|++++
T Consensus 291 --------~~~~~~~~~~~~~~~~~~~l~~~gi~v~-g~~~~-~~~~iRis~~-~~~~i~~~~~~l~~~l 349 (354)
T 3ly1_A 291 --------EGNFVFHQLVVPLKDYQTHMADAGVLIG-RAFPP-ADNWCRISLG-TPQEMQWVADTMREFR 349 (354)
T ss_dssp --------CSSEEEEECSSCHHHHHHHHHHTTEECC-CCCTT-CTTEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred --------CceEEEEECCCCHHHHHHHHHHCCEEEe-ecCCC-CCCEEEEEcC-CHHHHHHHHHHHHHHH
Confidence 3348999997667788888889999999 76544 5889999985 7899999999999876
No 63
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=100.00 E-value=4.2e-37 Score=309.50 Aligned_cols=328 Identities=17% Similarity=0.191 Sum_probs=254.0
Q ss_pred CCCCeEEecCCCCCCC--chhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEE
Q 012785 92 GGERIINVDHGDPTMY--EKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~--~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~ 168 (456)
.+..+|||+.|.|+.. +++.+.+... ..+........ |++..| ..+||+++++++.. +|.... +++|++
T Consensus 32 ~g~~~idl~~g~~~~~~~~~~~v~~a~~-~~~~~~~~~~~-y~~~~~-----~~~l~~~la~~~~~~~g~~~~-~~~v~~ 103 (407)
T 2zc0_A 32 KGVKLISLAAGDPDPELIPRAVLGEIAK-EVLEKEPKSVM-YTPANG-----IPELREELAAFLKKYDHLEVS-PENIVI 103 (407)
T ss_dssp SSCCCEECCSCCCCTTTSCHHHHHHHHH-HHHHHCGGGGS-CCCTTC-----CHHHHHHHHHHHHHHSCCCCC-GGGEEE
T ss_pred CCCceEeCCCCCCCchhCCHHHHHHHHH-HHHhhcccccc-CCCCCC-----CHHHHHHHHHHHHHhcCCCCC-cceEEE
Confidence 3457899999987643 3333333211 11222211234 777777 59999999999954 454443 579999
Q ss_pred ccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-----Ccccccc-------C--CCeEE-
Q 012785 169 GTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-----DAKRFNK-------D--GPYIE- 233 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-----d~~~l~~-------~--~~~~i- 233 (456)
|+|+++++.+++++++++|| +|+++.|+|+.+...++..|.+++.++. |.+.++. . ++++|
T Consensus 104 t~g~t~a~~~~~~~~~~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 179 (407)
T 2zc0_A 104 TIGGTGALDLLGRVLIDPGD----VVITENPSYINTLLAFEQLGAKIEGVPVDNDGMRVDLLEEKIKELKAKGQKVKLIY 179 (407)
T ss_dssp ESHHHHHHHHHHHHHCCTTC----EEEEEESCCHHHHHHHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ecCHHHHHHHHHHHhcCCCC----EEEEeCCChHHHHHHHHHcCCEEEEcccCCCCCCHHHHHHHHHhhhcccCCceEEE
Confidence 99999999999999999999 9999999999999999999999887765 3343321 2 56776
Q ss_pred EEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCC-----CCC--CCCCCcEEEecCccccCCCCceEEEE
Q 012785 234 LVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT-----SIT--YPADHDLMLFTVSKSTGHAGTRIGWA 298 (456)
Q Consensus 234 ~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~-----~~~--~~~~~~i~i~S~SK~~g~~G~RiG~l 298 (456)
++++||||||.+++ ++|+++|+++|+||+|.+..+. ++. ...+++++++||||.++ +|+|+||+
T Consensus 180 ~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~ 258 (407)
T 2zc0_A 180 TIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLG-TGFRIGWI 258 (407)
T ss_dssp ECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTC-TTSCCEEE
T ss_pred ECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccC-CCcceEEE
Confidence 57899999999887 2788999999999999864321 121 22357899999999999 99999999
Q ss_pred EEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcch-hHHHHHHHHHHHHHHHHHHHHHhc-CCccc
Q 012785 299 LVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDE-CFFEFTNHQMSTRWKQLRMAVQKS-GLFSV 376 (456)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~ 376 (456)
+++ +++++.+.......+++++++.|.++.++|+. . ..+ +++++.++.++++++.+.+.|++. +.+.+
T Consensus 259 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~------~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 328 (407)
T 2zc0_A 259 IAE-GEILKKVLMQKQPIDFCAPAISQYIALEYLKR---G------YFEKYHLEGALLGYKEKRDIMLKALENHLPNAEF 328 (407)
T ss_dssp ECC-HHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHT---T------HHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCB
T ss_pred ecC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHc---C------CchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 996 99999999887767788899999999999973 2 124 567788999999999999999874 55666
Q ss_pred cCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhC-CEEeecCCCCCC---CCCeEEEEecC-ChhHHHHHHH
Q 012785 377 PELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGN-KILTRSGKHFGF---SPKYVRISMLD-RDENYNLFVQ 449 (456)
Q Consensus 377 ~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~-gI~v~pg~~fg~---~~~~iRis~~~-~~e~i~~~l~ 449 (456)
..|.+++ |+|++++. +...+.+.|.++ ||.++||..|+. .++++||+++. ++++++++++
T Consensus 329 ~~~~~~~-------------~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~~~~ 395 (407)
T 2zc0_A 329 TKPIAGM-------------FVMFFLPEGADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIK 395 (407)
T ss_dssp CCCSBSS-------------EEEEECSTTCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHHHH
T ss_pred ecCCCcE-------------EEEEEcCCCCCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHHHHH
Confidence 5565665 89999864 456677777666 999999999863 46899999987 7899999999
Q ss_pred HHHhhh
Q 012785 450 RLSKIL 455 (456)
Q Consensus 450 ~L~~~l 455 (456)
+|++++
T Consensus 396 ~l~~~l 401 (407)
T 2zc0_A 396 KLAKLY 401 (407)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 64
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=100.00 E-value=9e-38 Score=313.87 Aligned_cols=323 Identities=16% Similarity=0.131 Sum_probs=245.1
Q ss_pred CCCCeEEecCCCC-CCCchhH----hhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCce
Q 012785 92 GGERIINVDHGDP-TMYEKYW----QKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHH 165 (456)
Q Consensus 92 ~~~~~i~l~~g~p-~~~~~~~----~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~ 165 (456)
..+.+|||+.|+| +...+++ +.+... . .... .....|++..| .++||++++++++. +|.... +++
T Consensus 26 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~-~-~~~~-~~~~~Y~~~~g-----~~~lr~~ia~~~~~~~~~~~~-~~~ 96 (401)
T 7aat_A 26 TNSKKMNLGVGAYRDDNGKPYVLNCVRKAEA-M-IAAK-KMDKEYLPIAG-----LADFTRASAELALGENSEAFK-SGR 96 (401)
T ss_dssp CCTTCEECCCCSCCCTTSCCCCCHHHHHHHH-H-HHHT-TCCCCCCCTTC-----CHHHHHHHHHHHHCTTCHHHH-TTC
T ss_pred CCCCceeeeeeeEECCCCCEechHHHHHHHH-H-hccc-ccccCCCCCCC-----CHHHHHHHHHHhcCCCccccc-cCc
Confidence 3446899999998 6554433 222111 1 1111 11346888788 59999999999964 454443 578
Q ss_pred EEE--ccCHHHHHHHHHHHhc---CCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC--------cc----cccc-
Q 012785 166 IVV--GTGSTQLFQAALYALS---SQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD--------AK----RFNK- 227 (456)
Q Consensus 166 I~~--t~G~~~al~~~~~~l~---~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d--------~~----~l~~- 227 (456)
|++ |+|+++++++++.++. ++|| +|++++|+|+.+...++..|.+++.++.+ .+ .++.
T Consensus 97 i~~v~t~G~~~al~~~~~~l~~~~~~gd----~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 172 (401)
T 7aat_A 97 YVTVQGISGTGSLRVGANFLQRFFKFSR----DVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKI 172 (401)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHCTTCC----EEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTS
T ss_pred eEEEecCcchHHHHHHHHHHHHhccCCC----EEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhC
Confidence 877 9999999999887765 8899 99999999999999999999999877753 22 2332
Q ss_pred -CCCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCCC-------C---CCCCCCcEEEecCcccc
Q 012785 228 -DGPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYTS-------I---TYPADHDLMLFTVSKST 288 (456)
Q Consensus 228 -~~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~~-------~---~~~~~~~i~i~S~SK~~ 288 (456)
.+++++++++||||||.+++. +|+++|+++|+||+|.+..+.+ + ....+++|+++||||.|
T Consensus 173 ~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~ 252 (401)
T 7aat_A 173 PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNM 252 (401)
T ss_dssp CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTS
T ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCccc
Confidence 357899999999999999882 7889999999999998754432 1 13457899999999999
Q ss_pred CCCCceEEEEEEe--CHH----HHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHH
Q 012785 289 GHAGTRIGWALVK--DME----VAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWK 362 (456)
Q Consensus 289 g~~G~RiG~l~~~--~~~----~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 362 (456)
|++|+|+||++++ +++ +.+.+.......+.+++...|.++..+++ ++... ..+.+++++.+++++++++
T Consensus 253 ~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~--~~~~~~~~~~~~~~~~~r~ 327 (401)
T 7aat_A 253 GLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILN---TPELR--KEWLVEVKGMADRIISMRT 327 (401)
T ss_dssp CCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH---CHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred ccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhC---CHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 9999999999872 355 55666666666678888899998888886 21000 0014668889999999999
Q ss_pred HHHHHHHhcC---CccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC
Q 012785 363 QLRMAVQKSG---LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD 439 (456)
Q Consensus 363 ~l~~~L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~ 439 (456)
.+.+.|++++ .+.+..|++++ |+|++++ .+.+..+++++||.+.|+ +||+++.
T Consensus 328 ~l~~~L~~~~~~~~~~~~~~~~~~-------------~~~~~~~--~~~~~~ll~~~gi~v~~~---------~Ris~~~ 383 (401)
T 7aat_A 328 QLVSNLKKEGSSHNWQHITDQIGM-------------FCFTGLK--PEQVERLTKEFSIYMTKD---------GRISVAG 383 (401)
T ss_dssp HHHHHHHHTTCCSCCHHHHHCCSS-------------EEECCCC--HHHHHHHHHHHCEECCTT---------CEEEGGG
T ss_pred HHHHHHHhcCCCCCCceecCCcce-------------EEecCCC--HHHHHHHHHhCCEeccCC---------CeEEecc
Confidence 9999999873 35666677777 8998874 566777788999999874 5999986
Q ss_pred -ChhHHHHHHHHHHhhhC
Q 012785 440 -RDENYNLFVQRLSKILS 456 (456)
Q Consensus 440 -~~e~i~~~l~~L~~~l~ 456 (456)
+++++++++++|+++++
T Consensus 384 ~~~~~i~~~~~~l~~~~~ 401 (401)
T 7aat_A 384 VASSNVGYLAHAIHQVTK 401 (401)
T ss_dssp CCTTTHHHHHHHHHHHHC
T ss_pred CChhhHHHHHHHHHHHhC
Confidence 77789999999999864
No 65
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=100.00 E-value=7.3e-38 Score=314.70 Aligned_cols=323 Identities=20% Similarity=0.210 Sum_probs=240.5
Q ss_pred CCCCeEEecCCCCCCCchhHhhhccccccccc--CccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIP--GWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVG 169 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~--~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t 169 (456)
.++.+|+|+.|+++++.++.+.+.... .+.. .......|++..| .++||+++++++. .|. . ++++|++|
T Consensus 31 ~~~~~i~l~~~~~~~~~~~~v~~a~~~-~~~~~~~~~~~~~y~~~~g-----~~~lr~~la~~l~-~g~-~-~~~~v~~~ 101 (400)
T 3asa_A 31 PQHTVINLSIGDTTQPLNASVAEAFAS-SIARLSSPTTCRGYGPDFG-----LPALRQKLSEDFY-RGF-V-DAKEIFIS 101 (400)
T ss_dssp TTSCCEECSSCCCCCCCCHHHHHHHHH-HHHHHTSSSCCCCCCCTTC-----CHHHHHHHHHTTS-TTS-S-CGGGEEEE
T ss_pred CCCceEeccCCCCCCCCCHHHHHHHHH-HHhcccccccccCCCCCCC-----CHHHHHHHHHHHH-cCC-C-CHHHEEEc
Confidence 456789999999987665544433221 1111 1111245776677 5999999999964 343 3 35799999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCe-EeeeccCcc-cc----cc-CCCeEEEEcCCCCCC
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSR-LYKWAGDAK-RF----NK-DGPYIELVTSPNNPD 242 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~-~~~~~~d~~-~l----~~-~~~~~i~v~~P~NPt 242 (456)
+|+++++.+++. ++.+|| +|++++|+|+.+...++..|.+ ++.++.+.+ ++ +. .+++++++++|||||
T Consensus 102 ~G~~~al~~~~~-~~~~gd----~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~npt 176 (400)
T 3asa_A 102 DGAKVDLFRLLS-FFGPNQ----TVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPEDTHIDILCLCSPNNPT 176 (400)
T ss_dssp SCHHHHHHHHHH-HHCSSC----EEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCCCCTTCCCSEEEEESSCTTT
T ss_pred cChHHHHHHHHH-HcCCCC----EEEECCCCcHHHHHHHHHcCCcceEecccchhcCcccChhhccCccEEEEeCCCCCC
Confidence 999999999765 457888 9999999999999999999998 888776643 22 22 357899999999999
Q ss_pred cccchH--------HhhhcCcEEEeeecCCCCCCC-----CCCCC---CCCcEEEecCccccCCCCceEEEEEEeCHHH-
Q 012785 243 GSVRQS--------VVNRSGGILVHDLAYYWPQYT-----SITYP---ADHDLMLFTVSKSTGHAGTRIGWALVKDMEV- 305 (456)
Q Consensus 243 G~~~~~--------l~~~~~~~iI~De~y~~~~~~-----~~~~~---~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~- 305 (456)
|.+++. +|+++|+++|+||+|.+..+. ++... .+++++++||||.+|++|+|+||++++ +++
T Consensus 177 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~-~~~~ 255 (400)
T 3asa_A 177 GTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIP-QELT 255 (400)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECC-TTCB
T ss_pred CCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeC-hhhc
Confidence 999872 688999999999999853221 22111 357899999999999999999999997 666
Q ss_pred ------HHHHHHHHhhccC-cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Q 012785 306 ------AKKMTKYIELNTI-GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPE 378 (456)
Q Consensus 306 ------~~~l~~~~~~~~~-~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 378 (456)
++.+.......++ +++.+.|.++.++|+. .++++.++.++++++.+.+.|++.+ +.+..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-------------~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~ 321 (400)
T 3asa_A 256 YADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSI-------------LPQLEAIHYYRENSDLLRKALLATG-FEVFG 321 (400)
T ss_dssp CTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-------------TTTCHHHHHHHHHHHHHHHHHHHTT-CEEEE
T ss_pred cchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCc-------------HHHHHHHHHHHHHHHHHHHHHHHCC-CeeeC
Confidence 5655443332333 6899999999998873 1456788899999999999999874 55555
Q ss_pred CCCcccccccccCCCCCceEEee-cCc--cHHHHH-HHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHh
Q 012785 379 LPSQFCTFLGRAFEPQPAFAWLK-CEQ--EIEDCE-SFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSK 453 (456)
Q Consensus 379 ~~g~~~~~~~~~~~~~~~f~~~~-~~~--~~~~~~-~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~ 453 (456)
+.+++ |+|++ ++. +...+. .+++++||.++||+.|+. +++++||++..+++++++++++|++
T Consensus 322 ~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~i~~~l~~l~~ 388 (400)
T 3asa_A 322 GEHAP-------------YLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKREDILAACERLQM 388 (400)
T ss_dssp CSSSS-------------EEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCSCHHHHHHHHHHHHC
T ss_pred CCCce-------------EEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeCCHHHHHHHHHHHHH
Confidence 55555 89999 763 333344 455577999999999974 4689999976799999999999998
Q ss_pred hhC
Q 012785 454 ILS 456 (456)
Q Consensus 454 ~l~ 456 (456)
+++
T Consensus 389 ~~~ 391 (400)
T 3asa_A 389 APA 391 (400)
T ss_dssp ---
T ss_pred HHH
Confidence 763
No 66
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=100.00 E-value=2.6e-38 Score=329.46 Aligned_cols=318 Identities=14% Similarity=0.145 Sum_probs=240.0
Q ss_pred eEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHH-HHhc-Cc--cCCCceEEEccC
Q 012785 96 IINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLH-KVVG-NA--ITENHHIVVGTG 171 (456)
Q Consensus 96 ~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~-~~~g-~~--~~~~~~I~~t~G 171 (456)
+|+|+.|+|.++++.++... . ..+ . ...|+++.| .++||+++++++ ...+ .. ..++++|++|+|
T Consensus 106 ~i~l~~g~~~~~~~~~~~al-~-~~~-~----~~~Y~~~~g-----~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G 173 (546)
T 2zy4_A 106 SLSYVRDQLGLDPAAFLHEM-V-DGI-L----GCNYPVPPR-----MLNISEKIVRQYIIREMGADAIPSESVNLFAVEG 173 (546)
T ss_dssp HHHHHHHTSCCCHHHHHHHH-H-HHH-H----TCSCCSSSS-----CCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEH
T ss_pred hhecccCCCCCCChHHHHHH-H-Hhh-h----cCCCCCCcC-----CHHHHHHHHHHHHHHhccCCCCCCCcceEEEECC
Confidence 78999999998776655532 1 111 1 136998888 589999987765 4432 21 223579999999
Q ss_pred HHHHHHHHHHH-----hcCCCCCCCcEEEEeCCCCCChhhhhhhc--CCeEeeeccCc--------ccccc---CCCeEE
Q 012785 172 STQLFQAALYA-----LSSQDASEPISVVSAAPYYSSYPSITDCV--KSRLYKWAGDA--------KRFNK---DGPYIE 233 (456)
Q Consensus 172 ~~~al~~~~~~-----l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~--g~~~~~~~~d~--------~~l~~---~~~~~i 233 (456)
+++++.+++++ ++++|| +|++++|+|+.|...+... |++++.++.|. +.++. .+++++
T Consensus 174 ~~eal~~~~~~l~~~~l~~~Gd----~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v 249 (546)
T 2zy4_A 174 GTAAMAYIFESLKLNGLLKAGD----KVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIF 249 (546)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTC----EEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTTEEEE
T ss_pred HHHHHHHHHHHhhhhhcCCCCC----EEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCCCeEE
Confidence 99999999988 478999 9999999999999886544 67777766543 33433 367899
Q ss_pred EEcCCCCCCcccchH--------Hh--hhcCcEEEeeecCCCCCC--CCCC-CCCCCcEEEecCccccCCCCceEEEEEE
Q 012785 234 LVTSPNNPDGSVRQS--------VV--NRSGGILVHDLAYYWPQY--TSIT-YPADHDLMLFTVSKSTGHAGTRIGWALV 300 (456)
Q Consensus 234 ~v~~P~NPtG~~~~~--------l~--~~~~~~iI~De~y~~~~~--~~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~ 300 (456)
+++|||||||.+++. +| ++++++||+||+|.+..+ .++. ...+++|+++||||.+|++|+|+||+++
T Consensus 250 ~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~ 329 (546)
T 2zy4_A 250 FCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGWRLGVVAA 329 (546)
T ss_dssp EEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGGCEEEEEE
T ss_pred EEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCcceEEEEE
Confidence 999999999999983 66 789999999999986432 2221 1246899999999999999999999999
Q ss_pred eCHHHHHHHHHH-------------H-----------------------hhccCcCChHHHHHHH-----HHHHhhhCCC
Q 012785 301 KDMEVAKKMTKY-------------I-----------------------ELNTIGVSKDSQLRAA-----KVLKVVSDSC 339 (456)
Q Consensus 301 ~~~~~~~~l~~~-------------~-----------------------~~~~~~~s~~~q~~a~-----~~L~~~~~~~ 339 (456)
+++++++++.+. . ...+.+++.+.|.++. ++++ ++
T Consensus 330 ~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~---~~- 405 (546)
T 2zy4_A 330 HQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMD---EA- 405 (546)
T ss_dssp ESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHC---TT-
T ss_pred CCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHh---cc-
Confidence 833477776321 1 1234578889998743 3333 22
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc---------------
Q 012785 340 KPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--------------- 404 (456)
Q Consensus 340 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--------------- 404 (456)
+.+++.+++.+++|++.+.+.|. .+ +.+.++.++| |+|++++.
T Consensus 406 -------~~~~~~~r~~~~~r~~~l~~~L~-~~-~~~~~~~~~~-------------~l~~~l~~~~~~~~~~~~~~wl~ 463 (546)
T 2zy4_A 406 -------DEYKHTLKQLIRRRETTLYRELG-MP-PLRDENAVDY-------------YTLIDLQDVTAKLYGEAFSEWAV 463 (546)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHGGGT-SS-CCCCTTBCCS-------------EEEEEHHHHHHHHHCHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhcC-CC-cccCCCCeeE-------------EEEEEHHHhhcccccHHHHHHhh
Confidence 57889999999999999998885 33 4445566777 88998742
Q ss_pred ----cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC-ChhHHHHHHHHHHhhh
Q 012785 405 ----EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 405 ----~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
+.+.+.++++++||.++||+.|+.+++++||+++. +++++++++++|++++
T Consensus 464 ~~~~~~~~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~~~~~e~i~~~~~~l~~~l 519 (546)
T 2zy4_A 464 KQSSTGDMLFRIADETGIVLLPGRGFGSNRPSGRASLANLNEYEYAAIGRALRKMA 519 (546)
T ss_dssp HHCCHHHHHHHHHHHHSCCCEESSCTTCSSCEEEEESSSSCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHCCEEEeCccccCCCCCeEEEEeccCCHHHHHHHHHHHHHHH
Confidence 23557788999999999999998777899999987 8899999999998875
No 67
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=100.00 E-value=2.1e-37 Score=312.48 Aligned_cols=319 Identities=14% Similarity=0.164 Sum_probs=240.8
Q ss_pred CCCeEEecCCCC-----CCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEE
Q 012785 93 GERIINVDHGDP-----TMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIV 167 (456)
Q Consensus 93 ~~~~i~l~~g~p-----~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~ 167 (456)
+.++|+|++|+| ++++++.+.+... .+... ....|++..| .++||+++++++.....+. .+++|+
T Consensus 36 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~--~~~~~--~~~~Y~~~~g-----~~~lr~~la~~~~~~~~~~-~~~~i~ 105 (413)
T 3t18_A 36 REAVINAALGTLLDDKGKIIALPSVYDRLD--EMDRS--HIASYAPIEG-----EKDYRKIVIDTLFGPYKPE-GYISAI 105 (413)
T ss_dssp GGGCEECCSCCCBCTTSCBCCCHHHHHHHH--HSCHH--HHHSCCCTTC-----CHHHHHHHHHHHHGGGCCS-SEEEEE
T ss_pred ccceEeccccCccCCCCCcCChHHHHHHHH--hcCcc--cccCcCCCCC-----CHHHHHHHHHHHhcccCcc-ccCcEE
Confidence 568999999997 6666665554321 11111 1246887788 5999999999985433222 345999
Q ss_pred EccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-------Ccccccc---C----CCe-E
Q 012785 168 VGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-------DAKRFNK---D----GPY-I 232 (456)
Q Consensus 168 ~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-------d~~~l~~---~----~~~-~ 232 (456)
+|+|+++++.+++++++++|| +|++++|+|+.+...++..|.+++.++. |.+.++. . +++ +
T Consensus 106 ~t~g~~~al~~~~~~~~~~gd----~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 181 (413)
T 3t18_A 106 ATPGGTGAIRSAIFSYLDEGD----PLICHDYYWAPYRKICEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRDSDRIA 181 (413)
T ss_dssp EESHHHHHHHHHHHHHCCSSC----EEEEESSCCTHHHHHHHHHTCEEEEECCBCTTSSBCHHHHHHHHHHHHHHCSEEE
T ss_pred EcCccHHHHHHHHHHhcCCCC----EEEECCCCcccHHHHHHHhCCeEEEeeccCCCCCcCHHHHHHHHHHHhhcCCCEE
Confidence 999999999999999999999 9999999999999999999999988775 3333322 1 466 7
Q ss_pred EEEcCC-CCCCcccchH--------Hhh------hcCcEEEeeecCCCCCCC-----CCC----CCCCC--cEEEecCcc
Q 012785 233 ELVTSP-NNPDGSVRQS--------VVN------RSGGILVHDLAYYWPQYT-----SIT----YPADH--DLMLFTVSK 286 (456)
Q Consensus 233 i~v~~P-~NPtG~~~~~--------l~~------~~~~~iI~De~y~~~~~~-----~~~----~~~~~--~i~i~S~SK 286 (456)
+++++| |||||.+++. +|+ ++|+++|+||+|.+..+. ++. ...++ +|+++||||
T Consensus 182 vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK 261 (413)
T 3t18_A 182 SLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEKFSNLPRNLFVVVAFSMSK 261 (413)
T ss_dssp EEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGGGTTCCTTEEEEEEEEHHH
T ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHHHhhcCCCeeEEEEEecCc
Confidence 888999 9999999982 566 899999999999753222 211 22344 488999999
Q ss_pred ccCCCCceEEEEEEe--CHHHHHHHHHHHhhc----cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHH
Q 012785 287 STGHAGTRIGWALVK--DMEVAKKMTKYIELN----TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTR 360 (456)
Q Consensus 287 ~~g~~G~RiG~l~~~--~~~~~~~l~~~~~~~----~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 360 (456)
.+|++|+|+||++++ ++++++.+....... ..+++.++|.++..+|+..... .+.++++++++.++++
T Consensus 262 ~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~------~~~~~~~~~~~~~~~~ 335 (413)
T 3t18_A 262 SHTAYGLRSGAAVGISSSKEIIEEFEASLAHSARCNWSNGTHAAQNILIELERAENKK------IYEQELVDLRNMLKSR 335 (413)
T ss_dssp HTTCGGGCCEEEEEEESCHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSHHHHH------HHHHHHHHHHHHHHHH
T ss_pred cCCCcCcCcEEEEEecCCHHHHHHHHHHHHHhhhccccCCChHHHHHHHHHhcChHHH------HHHHHHHHHHHHHHHH
Confidence 999999999999982 399999988775432 2468999999998888621000 0135667788999999
Q ss_pred HHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC-
Q 012785 361 WKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD- 439 (456)
Q Consensus 361 ~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~- 439 (456)
++.+.+.|++. ++.+..+++++ |+|+++. +...+.+.|+++||.++|| ++++||+++.
T Consensus 336 ~~~l~~~l~~~-g~~~~~~~~~~-------------~~~~~~~-~~~~~~~~l~~~gv~v~~g------~~~iRis~~~~ 394 (413)
T 3t18_A 336 ADVFVTAAKEN-KLTMIPYFGGF-------------FTFIPTD-KAFDIVKDLEKENIFTIPS------AKGIRVAICGV 394 (413)
T ss_dssp HHHHHHHHHHT-TCCCBCCCSSS-------------CEEEECS-CHHHHHHHHHHTTEECEEC------SSEEEECTTTS
T ss_pred HHHHHHHHHHc-CCCccCCCceE-------------EEEeCCC-CHHHHHHHHHhCCEEEecC------CCceEEEEeeC
Confidence 99999999987 46777778887 8998875 4556667889999999996 5789999986
Q ss_pred ChhHHHHHHHHHHhhh
Q 012785 440 RDENYNLFVQRLSKIL 455 (456)
Q Consensus 440 ~~e~i~~~l~~L~~~l 455 (456)
+++++ +++|.+++
T Consensus 395 ~~~~~---l~~l~~~l 407 (413)
T 3t18_A 395 GEEKI---PKLVQRLA 407 (413)
T ss_dssp CGGGH---HHHHHHHH
T ss_pred CHHHH---HHHHHHHH
Confidence 66665 66666654
No 68
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=100.00 E-value=3.1e-37 Score=309.28 Aligned_cols=324 Identities=12% Similarity=0.067 Sum_probs=244.4
Q ss_pred CCCCeEEecCC---CCCCCch--hHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCc--
Q 012785 92 GGERIINVDHG---DPTMYEK--YWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENH-- 164 (456)
Q Consensus 92 ~~~~~i~l~~g---~p~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~-- 164 (456)
...++|||+.| +|+..+| +.+.++.....+.... ...|++..| .++||+++++++...+....+++
T Consensus 24 ~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~--~~~y~~~~g-----~~~lr~~la~~~~~~~~~~~~~~~~ 96 (397)
T 3fsl_A 24 PRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHG--ASLYLPMEG-----LNCYRHAIAPLLFGADHPVLKQQRV 96 (397)
T ss_dssp CCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCC--CCCCCCTTC-----CHHHHHHHHHHHHCTTCHHHHTTCE
T ss_pred CCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccc--cccCCCCCc-----hHHHHHHHHHHHhcCCcccccccce
Confidence 44578999999 6776554 4454432210222211 236888788 59999999999965433221356
Q ss_pred eEEEccCHHHHHHHHH--HHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc--------Ccccccc------C
Q 012785 165 HIVVGTGSTQLFQAAL--YALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG--------DAKRFNK------D 228 (456)
Q Consensus 165 ~I~~t~G~~~al~~~~--~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~--------d~~~l~~------~ 228 (456)
+|++|+|+++++++++ ..++.+|| +|+++.|+|+.+...++..|.+++.++. |.+.++. .
T Consensus 97 ~i~~t~g~~~a~~~~~~~~~~~~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 172 (397)
T 3fsl_A 97 ATIQTLGGSGALKVGADFLKRYFPES----GVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQA 172 (397)
T ss_dssp EEEEESHHHHHHHHHHHHHHHHCTTC----CEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCCT
T ss_pred EEEEcCCcHHHHHHHHHHHHhcCCCC----eEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCC
Confidence 8999999999999995 45578999 9999999999999999999999988776 3344432 3
Q ss_pred CCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCC------CC---CCCCCCcEEEecCccccCCC
Q 012785 229 GPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYT------SI---TYPADHDLMLFTVSKSTGHA 291 (456)
Q Consensus 229 ~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~------~~---~~~~~~~i~i~S~SK~~g~~ 291 (456)
+++++++++||||||.+++. +|+++|+++|+||+|.+..+. ++ ....+++++++||||.+|++
T Consensus 173 ~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 252 (397)
T 3fsl_A 173 GSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLY 252 (397)
T ss_dssp TCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCG
T ss_pred CCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCc
Confidence 56889999999999999872 788999999999999864432 11 13567899999999999999
Q ss_pred CceEEEEEE--eCHHHHHHHHHH----HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 292 GTRIGWALV--KDMEVAKKMTKY----IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 292 G~RiG~l~~--~~~~~~~~l~~~----~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
|+|+||+++ +++++++.+... ......+++.+.|.++..+|....-.. .+++++++.++.++++++.+.
T Consensus 253 G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~~~~~~~~~~~~l~ 327 (397)
T 3fsl_A 253 GERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKA-----SWLKEVEEMRTRILAMRQELV 327 (397)
T ss_dssp GGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 999999986 346666544322 223456678899999988887210000 015678899999999999999
Q ss_pred HHHHhcC---CccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC-Ch
Q 012785 366 MAVQKSG---LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD-RD 441 (456)
Q Consensus 366 ~~L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-~~ 441 (456)
+.|++.+ ++.+..+.+++ |+|++++ .+.+.++++++||.+.||. ||+++. ++
T Consensus 328 ~~L~~~~~~~~~~~~~~~~~~-------------~~~~~~~--~~~~~~~l~~~gi~v~~g~---------Ris~~~~~~ 383 (397)
T 3fsl_A 328 KVLSTEMPERNFDYLLNQRGM-------------FSYTGLS--AAQVDRLREEFGVYLIASG---------RMCVAGLNT 383 (397)
T ss_dssp HHHHHHCTTSCCTHHHHCCSS-------------EEECCCC--HHHHHHHHHTTCEECCTTC---------EEEGGGCCT
T ss_pred HHHHhcCCCCCceeecCCceE-------------EEecCCC--HHHHHHHHHhCCEEECCCC---------eEEEEecCH
Confidence 9999874 46666666776 8998884 5668888999999999964 999987 88
Q ss_pred hHHHHHHHHHHhhh
Q 012785 442 ENYNLFVQRLSKIL 455 (456)
Q Consensus 442 e~i~~~l~~L~~~l 455 (456)
+++++++++|++++
T Consensus 384 ~~i~~~~~~l~~~l 397 (397)
T 3fsl_A 384 ANVQRVAKAFAAVM 397 (397)
T ss_dssp TTHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHhhC
Confidence 89999999999874
No 69
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=100.00 E-value=7.8e-37 Score=302.32 Aligned_cols=310 Identities=16% Similarity=0.198 Sum_probs=242.4
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccC
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTG 171 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G 171 (456)
.++.+|||+.|+|+++.++.+.+... ..+. . ...|++ .| ..++|++++++++. ++++|++|+|
T Consensus 24 ~~~~~idl~~~~~~~~~~~~v~~a~~-~~~~-~---~~~y~~-~~-----~~~l~~~la~~~~~------~~~~i~~~~g 86 (361)
T 3ftb_A 24 KGRELLDYSSNINPLGIPKSFLNNID-EGIK-N---LGVYPD-VN-----YRRLNKSIENYLKL------KDIGIVLGNG 86 (361)
T ss_dssp ----CEETTCCCCTTCSCHHHHTTHH-HHHH-G---GGSCCC-TT-----CHHHHHHHHHHHTC------CSCEEEEESS
T ss_pred CCCCEEEecCCCCCCCCCHHHHHHHH-HHHH-H---hcCCCC-cc-----HHHHHHHHHHHhCC------CcceEEEcCC
Confidence 45678999999988877666654322 1111 1 245755 45 59999999999953 4579999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc------cccc--CCCeEEEEcCCCCCCc
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK------RFNK--DGPYIELVTSPNNPDG 243 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~------~l~~--~~~~~i~v~~P~NPtG 243 (456)
+++++++++.++ | +|+++.|+|+.+...++..|.+++.++.|.+ .++. .+++++++++||||||
T Consensus 87 ~t~al~~~~~~~----d----~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~i~~p~nptG 158 (361)
T 3ftb_A 87 ASEIIELSISLF----E----KILIIVPSYAEYEINAKKHGVSVVFSYLDENMCIDYEDIISKIDDVDSVIIGNPNNPNG 158 (361)
T ss_dssp HHHHHHHHHTTC----S----EEEEEESCCTHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHTTTCSEEEEETTBTTTT
T ss_pred HHHHHHHHHHHc----C----cEEEecCChHHHHHHHHHcCCeEEEeecCcccCCCHHHHHHhccCCCEEEEeCCCCCCC
Confidence 999999999887 6 9999999999999999999999998876643 2321 1278999999999999
Q ss_pred ccchH--------HhhhcCcEEEeeecCCCCCC---CC---CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHH
Q 012785 244 SVRQS--------VVNRSGGILVHDLAYYWPQY---TS---ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKM 309 (456)
Q Consensus 244 ~~~~~--------l~~~~~~~iI~De~y~~~~~---~~---~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l 309 (456)
.+++. +|+++|+++|+||+|.+..+ .+ .....+++++++|+||.+|++|+|+||+++.++++++.+
T Consensus 159 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~ 238 (361)
T 3ftb_A 159 GLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKI 238 (361)
T ss_dssp BCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHH
Confidence 99872 67799999999999985333 11 223457889999999999999999999993359999998
Q ss_pred HHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccCCCCccccccc
Q 012785 310 TKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFS-VPELPSQFCTFLG 388 (456)
Q Consensus 310 ~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~g~~~~~~~ 388 (456)
..... +++++++.|.++.++|+ + .+++++.+++++++++.+.+.|++++.+. +.++.
T Consensus 239 ~~~~~--~~~~~~~~~~~~~~~l~---~---------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-------- 296 (361)
T 3ftb_A 239 KAKQN--PWNINCFAEMAAINCLK---D---------TNYIEESLLWIKKERKRFIEELNKIGFIKRVFSPH-------- 296 (361)
T ss_dssp HTTSC--TTCSCHHHHHHHHHTSS---C---------HHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCS--------
T ss_pred HhhCC--CCCCCHHHHHHHHHHhc---C---------HHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCCC--------
Confidence 87654 67899999999999887 1 57889999999999999999999886665 44433
Q ss_pred ccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 389 RAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 389 ~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
++|+|++++. +.+.+.+.|.++||.++||..|+. +++++||+++ ++++++++++.|+++.
T Consensus 297 ------~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~ 358 (361)
T 3ftb_A 297 ------ANFVLCRLENISGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK-DEKKNTKFLRALKGVE 358 (361)
T ss_dssp ------SSEEEEEESSSCHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred ------CeEEEEEcCCCCHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHH
Confidence 3378888875 667788888888999999999974 5789999995 6666666666666543
No 70
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=100.00 E-value=3.9e-37 Score=310.28 Aligned_cols=323 Identities=15% Similarity=0.090 Sum_probs=242.1
Q ss_pred CCCCeEEecCCCC-CCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceE--EE
Q 012785 92 GGERIINVDHGDP-TMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHI--VV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~p-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I--~~ 168 (456)
..+++|||+.|+| ++..++.+.+..... .. .....|.+..| .++||+++++++........++++| ..
T Consensus 39 ~~~~~i~l~~g~~~d~~~~~~v~~a~~~a--~~--~~~~~y~~~~g-----~~~lr~~ia~~~~~~~~~~~~~~~i~~~~ 109 (409)
T 4eu1_A 39 PAKRKVNLSIGVYRDDADQPFVLECVKQA--TL--GTNMDYAPVTG-----IASFVEEAQKLCFGPTCAALRDGRIASCQ 109 (409)
T ss_dssp CCSSCEECCCSSCCCTTSCCCCCHHHHTC--CC--CSCCCCCCTTC-----CHHHHHHHHHHHHCSSCHHHHTTCEEEEE
T ss_pred CCcCceeeeeeEEECCCCCEeecHHHHhc--Cc--cccccCCCCCC-----cHHHHHHHHHHHcCCCchhhccCceeeee
Confidence 4467899999998 776655444322211 11 12346877788 5999999999983211111114577 45
Q ss_pred ccCHHHHHHHHH---HHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc--------Ccccccc------CCCe
Q 012785 169 GTGSTQLFQAAL---YALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG--------DAKRFNK------DGPY 231 (456)
Q Consensus 169 t~G~~~al~~~~---~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~--------d~~~l~~------~~~~ 231 (456)
|.|++++++++. .++.++|| +|++++|+|+.+...++..|.+++.++. |.+.++. .+++
T Consensus 110 ~~~g~ga~~~~~~~~~~~~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~ 185 (409)
T 4eu1_A 110 TLGGTGALRIGGDLLNRFVANCN----RIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSV 185 (409)
T ss_dssp ESHHHHHHHHHHHHGGGTSSSCC----EEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCE
T ss_pred cccchHHHHHHHHHHHHhcCCCC----EEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcE
Confidence 888888888754 45568889 9999999999999999999999988775 3344432 2456
Q ss_pred EEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCCC-------C---CCCCCCcEEEecCccccCCCCc
Q 012785 232 IELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYTS-------I---TYPADHDLMLFTVSKSTGHAGT 293 (456)
Q Consensus 232 ~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~~-------~---~~~~~~~i~i~S~SK~~g~~G~ 293 (456)
++++++||||||.+++. +|+++|+++|+||+|.+..+.+ + ....+++|+++||||++|++|+
T Consensus 186 ~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~ 265 (409)
T 4eu1_A 186 ILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGH 265 (409)
T ss_dssp EEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGG
T ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccC
Confidence 77789999999999882 7899999999999999754432 1 1345789999999999999999
Q ss_pred eEEEE--EEeCHH----HHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 012785 294 RIGWA--LVKDME----VAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMA 367 (456)
Q Consensus 294 RiG~l--~~~~~~----~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 367 (456)
|+||+ ++++++ +++.++........+++.+.|.++..+|+...-.. ++.+++++.++.++++++.+.+.
T Consensus 266 riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~ 340 (409)
T 4eu1_A 266 RCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTA-----LWKKELKQMSSRIAEVRKRLVSE 340 (409)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997 666677 77777776666678889999999999988210000 01456788999999999999999
Q ss_pred HHhcCC---ccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC-ChhH
Q 012785 368 VQKSGL---FSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD-RDEN 443 (456)
Q Consensus 368 L~~~~~---~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-~~e~ 443 (456)
|++.+. +.+..+++++ |+|++++ .+.+..+++++||.+.|| .||+++. ++++
T Consensus 341 L~~~g~~~~~~~~~~~~~~-------------~~~~~~~--~~~~~~ll~~~gv~v~p~---------~Ri~~~~~~~~~ 396 (409)
T 4eu1_A 341 LKACGSVHDWSHIERQVGM-------------MAYTGLT--REQVELLRSEYHIYMTLN---------GRAAVSGLNSTN 396 (409)
T ss_dssp HHHTTCCSCCHHHHHSCSS-------------EEECCCC--HHHHHHHHHHHCEECCTT---------CEEEGGGCCTTT
T ss_pred HHhcCCCCCcceecCCceE-------------EEEeCCC--HHHHHHHHHcCCEEEcCC---------CEEEEEecCHhh
Confidence 998752 5566677777 8998774 456777777899999995 2999986 8888
Q ss_pred HHHHHHHHHhhhC
Q 012785 444 YNLFVQRLSKILS 456 (456)
Q Consensus 444 i~~~l~~L~~~l~ 456 (456)
+++++++|+++++
T Consensus 397 i~~~~~~l~~~l~ 409 (409)
T 4eu1_A 397 VEYVSQAIHNVTK 409 (409)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998874
No 71
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=5.7e-37 Score=312.27 Aligned_cols=331 Identities=15% Similarity=0.199 Sum_probs=249.5
Q ss_pred CCeE-EecCCCCCCCch--hHhhhccccccccc-------C--ccccccccCCCCcccCCCHHHHHHHHHHHH-HhcCcc
Q 012785 94 ERII-NVDHGDPTMYEK--YWQKVGDKTTIVIP-------G--WQSLSYFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAI 160 (456)
Q Consensus 94 ~~~i-~l~~g~p~~~~~--~~~~~~~~~~~~~~-------~--~~~~~~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~ 160 (456)
+++| +|++|.|+.+++ +.+.+. ....+.. . ......|++..| .++||++||+|+. .+|..+
T Consensus 31 ~~~i~~l~~g~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~y~~~~g-----~~~lr~~ia~~l~~~~g~~~ 104 (444)
T 3if2_A 31 DQPVNMLGGGNPAKIDAVNELFLET-YKALGNDNDTGKANSSAIISMANYSNPQG-----DSAFIDALVGFFNRHYDWNL 104 (444)
T ss_dssp SSCCEECSCCCCCCCHHHHHHHHHH-HHHHHSCSCTTCCCCHHHHHHHSCCCTTC-----CHHHHHHHHHHHHHHHCCCC
T ss_pred chhhhccCCCCCCcccchHHHHHHH-HHHHHhccccccccchhhhhhhccCCCCC-----CHHHHHHHHHHHHhhcCCCC
Confidence 6789 999999998643 112211 1111222 1 111246888888 5999999999995 456666
Q ss_pred CCCceEEEccCHHHHHHHHHHHhcCCCCCC----------CcEEEEe-CCCCCChhhh------hhhcCCeEeeec----
Q 012785 161 TENHHIVVGTGSTQLFQAALYALSSQDASE----------PISVVSA-APYYSSYPSI------TDCVKSRLYKWA---- 219 (456)
Q Consensus 161 ~~~~~I~~t~G~~~al~~~~~~l~~~gd~~----------~~~Vlv~-~P~y~~~~~~------~~~~g~~~~~~~---- 219 (456)
. +++|++|+|+++++++++++++.+||.. ..+|+++ +|+|+.+... +...|.+++.++
T Consensus 105 ~-~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (444)
T 3if2_A 105 T-SENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGE 183 (444)
T ss_dssp C-GGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTE
T ss_pred C-HHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEecccccc
Confidence 4 5799999999999999999998877400 0036664 9999999874 345577766554
Q ss_pred -------cCcccccc------CCCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCC----CCCCC-CC
Q 012785 220 -------GDAKRFNK------DGPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWP----QYTSI-TY 273 (456)
Q Consensus 220 -------~d~~~l~~------~~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~----~~~~~-~~ 273 (456)
+|.+.++. .++++|++++||||||.+++. +|+++|+++|+||+|..+ .+.+. ..
T Consensus 184 ~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~ 263 (444)
T 3if2_A 184 EGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLN 263 (444)
T ss_dssp EEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCC
T ss_pred cCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCccccccccccccc
Confidence 45555543 357899999999999999882 689999999999999852 11121 13
Q ss_pred CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHH-
Q 012785 274 PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEF- 352 (456)
Q Consensus 274 ~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~- 352 (456)
..+++++++||||. +++|+|+||++++ +++++.+.......+++++++.|.++..+++ .. ...++..+
T Consensus 264 ~~~~~i~~~S~sK~-~~~G~r~G~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~------~~~~~~~~~ 332 (444)
T 3if2_A 264 WDNNTILCFSLSKI-GLPGMRTGIIVAD-AKVIEAVSAMNAVVNLAPTRFGAAIATPLVA---ND------RIKQLSDNE 332 (444)
T ss_dssp CCTTEEEEEESTTT-TCGGGCCEEEECC-HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHH---TS------HHHHHHHHT
T ss_pred CCCCEEEEechhhc-cCCCCceEEEEEC-HHHHHHHHHHHHhccCCCChHHHHHHHHHHH---cC------chhHHHHHH
Confidence 35789999999996 7799999999996 9999999998887788999999999999998 33 12445554
Q ss_pred HHHHHHHHHHHHHHHHHh-cCC--ccccCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCC
Q 012785 353 TNHQMSTRWKQLRMAVQK-SGL--FSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHF 426 (456)
Q Consensus 353 ~~~~~~~~~~~l~~~L~~-~~~--~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~f 426 (456)
+++.++++++.+.+.|.+ ++. +.+..+.+++ |+|++++. +.+.+.+.|+++||.++||+.|
T Consensus 333 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~ 399 (444)
T 3if2_A 333 IKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAI-------------FLWLWFKDLPISTLDLYERLKAKGTLIVPSEYF 399 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSS-------------EEEEEETTCSSCHHHHHHHHHHTTEECEEGGGS
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCceEecCCccE-------------EEEEEcCCCCCCHHHHHHHHHHCCeEEecchhh
Confidence 778899999999998876 342 4455566666 89998863 5677888889999999999998
Q ss_pred CCC---------CCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 427 GFS---------PKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 427 g~~---------~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
..+ .+++||+++.+++++++++++|++++
T Consensus 400 ~~~~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~~ 437 (444)
T 3if2_A 400 FPGVDVSDYQHAHECIRMSIAADEQTLIDGIKVIGEVV 437 (444)
T ss_dssp CTTCCCTTCSGGGSEEEEESSSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCcccccCCCeEEEEEeCCHHHHHHHHHHHHHHH
Confidence 531 26899999889999999999999875
No 72
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=100.00 E-value=4.6e-37 Score=305.83 Aligned_cols=287 Identities=20% Similarity=0.291 Sum_probs=240.2
Q ss_pred ccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh
Q 012785 129 SYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT 208 (456)
Q Consensus 129 ~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~ 208 (456)
..|++..| .++||+++++++.. . .+++|++|+|+++++.+++.+++++|| +|+++.|+|+.+...+
T Consensus 57 ~~y~~~~g-----~~~l~~~la~~~~~----~-~~~~v~~~~g~~~a~~~~~~~l~~~gd----~Vl~~~~~~~~~~~~~ 122 (375)
T 3op7_A 57 LNYGWIEG-----SPAFKKSVSQLYTG----V-KPEQILQTNGATGANLLVLYSLIEPGD----HVISLYPTYQQLYDIP 122 (375)
T ss_dssp CSSCCTTC-----CHHHHHHHHTTSSS----C-CGGGEEEESHHHHHHHHHHHHHCCTTC----EEEEEESSCTHHHHHH
T ss_pred cCCCCCCC-----hHHHHHHHHHHhcc----C-ChhhEEEcCChHHHHHHHHHHhcCCCC----EEEEeCCCchhHHHHH
Confidence 35777777 59999999998731 1 357999999999999999999999999 9999999999999999
Q ss_pred hhcCCeEeeeccC--------cccccc---CCCeEEEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCC
Q 012785 209 DCVKSRLYKWAGD--------AKRFNK---DGPYIELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT 269 (456)
Q Consensus 209 ~~~g~~~~~~~~d--------~~~l~~---~~~~~i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~ 269 (456)
+..|.+++.++.+ .+.++. .++++|++++||||||.+++ ++|+++|+++|+||+|.+..+.
T Consensus 123 ~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~ 202 (375)
T 3op7_A 123 KSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSEL 202 (375)
T ss_dssp HHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSS
T ss_pred HHcCCEEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccc
Confidence 9999998876643 344432 36789999999999999988 2789999999999999975443
Q ss_pred CCC---CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcc
Q 012785 270 SIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSED 346 (456)
Q Consensus 270 ~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~ 346 (456)
+.+ ...+++++++||||.+|++|+|+||++++ +++++.++......+++.+++.|.++...|+. .
T Consensus 203 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~ 270 (375)
T 3op7_A 203 DVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAAN-HQVTDILRDYRDYTMICAGVFDDLVAQLALAH-----------Y 270 (375)
T ss_dssp CCCCHHHHCTTEEEEEESSSSSSCGGGCCEEEECC-HHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHT-----------H
T ss_pred CCCchhhhcCCEEEEeEChhhcCCcccceEEEEeC-HHHHHHHHHHHhhhccCCCcHHHHHHHHHHhc-----------c
Confidence 322 33578899999999999999999999995 99999999888777888999999999988872 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHH-HHHHHhCCEEeecC
Q 012785 347 ECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDC-ESFLKGNKILTRSG 423 (456)
Q Consensus 347 ~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~-~~~l~~~gI~v~pg 423 (456)
++++++.++.++++++.+.+.|++.+.+.+..+.+++ +.|+.++. +...+ .++++++||.++||
T Consensus 271 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g 337 (375)
T 3op7_A 271 QEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVS-------------TSFVKIAVDMPMEDFCLQLLQEHGVLLVPG 337 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSS-------------CEEEEECCSSCHHHHHHHHHHHHCEECEEG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeE-------------EEeEEcCCCCCHHHHHHHHHHhCCEEEeCh
Confidence 6788999999999999999999988777777777776 56666642 44444 44557999999999
Q ss_pred CCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 424 KHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 424 ~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
..|+. ++++||+++.+++++++++++|++++
T Consensus 338 ~~~~~-~~~iRi~~~~~~~~i~~~l~~l~~~l 368 (375)
T 3op7_A 338 NRFER-DGYVRLGFACEQETLIKGLEKLSQFL 368 (375)
T ss_dssp GGGTC-TTEEEECCCSCHHHHHHHHHHHHHHH
T ss_pred hhhCC-CCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 99986 88999999888899999999999876
No 73
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=100.00 E-value=8.5e-37 Score=311.60 Aligned_cols=324 Identities=15% Similarity=0.085 Sum_probs=244.0
Q ss_pred CCCeEEecCCCC-CCCchhHhhhccccc--ccc-cCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccC--CCceE
Q 012785 93 GERIINVDHGDP-TMYEKYWQKVGDKTT--IVI-PGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAIT--ENHHI 166 (456)
Q Consensus 93 ~~~~i~l~~g~p-~~~~~~~~~~~~~~~--~~~-~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~--~~~~I 166 (456)
.+.+|||+.|.| ++..++++....... .+. ........|.+..| .++||+++++++. |.... .+++|
T Consensus 48 ~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G-----~~~lr~~ia~~l~--g~~~~~~~~~~i 120 (448)
T 3meb_A 48 NPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAG-----FPLFLEAAQFLMF--GKDSKAAQEGRI 120 (448)
T ss_dssp CTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTC-----CHHHHHHHHHHHH--CTTCHHHHTTCE
T ss_pred CCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcc-----hHHHHHHHHHHhc--CCCccccCcCcE
Confidence 345799999998 665444333221111 121 01112346888788 5999999999982 22211 14789
Q ss_pred EE--ccCHHHHHHH--HHHHhcCCCCCCCcEEEEeCCCCCChhhhhh----hcCCeEeeecc-Cc--------ccccc--
Q 012785 167 VV--GTGSTQLFQA--ALYALSSQDASEPISVVSAAPYYSSYPSITD----CVKSRLYKWAG-DA--------KRFNK-- 227 (456)
Q Consensus 167 ~~--t~G~~~al~~--~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~----~~g~~~~~~~~-d~--------~~l~~-- 227 (456)
++ |+|+++++++ .+.+++.+|| +|++++|+|+.+...++ ..|.+++.++. |. +.++.
T Consensus 121 ~~~~t~ggt~al~l~~~~~~~~~~gd----~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l 196 (448)
T 3meb_A 121 ASCQSLSGTGSLHIGFEFLHLWMPKA----EFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDI 196 (448)
T ss_dssp EEEEESHHHHHHHHHHHHHHHHCTTC----CEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHH
T ss_pred EEEECCcHHHHHHHHHHHHHHhCCCC----EEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHH
Confidence 99 9999999988 5556778999 99999999999999999 99999887766 33 33322
Q ss_pred ----CCCeEEEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCCC-------C---CCCCCCcEEEecCc
Q 012785 228 ----DGPYIELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYTS-------I---TYPADHDLMLFTVS 285 (456)
Q Consensus 228 ----~~~~~i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~~-------~---~~~~~~~i~i~S~S 285 (456)
.+++++++++||||||.+++ ++|+++|+++|+||+|.+..+.+ + ....+++|+++|||
T Consensus 197 ~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 276 (448)
T 3meb_A 197 QSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFS 276 (448)
T ss_dssp HHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECT
T ss_pred HhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEeccc
Confidence 24678889999999999987 27889999999999999754432 1 12357899999999
Q ss_pred cccCCCCceEEEE--EE--------eCH----HHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHH
Q 012785 286 KSTGHAGTRIGWA--LV--------KDM----EVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFE 351 (456)
Q Consensus 286 K~~g~~G~RiG~l--~~--------~~~----~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~ 351 (456)
|.||++|+|+||+ ++ +++ ++++.+.......+.+++.+.|.++..+|....-.. ++.++++
T Consensus 277 K~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~-----~~~~~~~ 351 (448)
T 3meb_A 277 KNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQ-----MFYDNVK 351 (448)
T ss_dssp TTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHH-----HHHHHHH
T ss_pred ccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHH-----HHHHHHH
Confidence 9999999999998 77 545 677777776666777899999999999887210000 0135688
Q ss_pred HHHHHHHHHHHHHHHHHHhc--CC------ccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecC
Q 012785 352 FTNHQMSTRWKQLRMAVQKS--GL------FSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSG 423 (456)
Q Consensus 352 ~~~~~~~~~~~~l~~~L~~~--~~------~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg 423 (456)
+++++++++|+.+.+.|+++ +. +....+++++ |+|+.++ .+.+..+++++||.+.||
T Consensus 352 ~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~-------------~~~~~~~--~~~~~~ll~~~gV~v~~G 416 (448)
T 3meb_A 352 EMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGM-------------FTFTGLT--PEHVDYLKEKWSIYLVKA 416 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSS-------------EEECCCC--HHHHHHHHHHHCEEECSG
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceE-------------EEecCCC--HHHHHHHHHhCCEEEeCC
Confidence 99999999999999999987 33 5555666776 8998884 566777778999999997
Q ss_pred CCCCCCCCeEEEEecC-ChhHHHHHHHHHHhhh
Q 012785 424 KHFGFSPKYVRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 424 ~~fg~~~~~iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
+ .|||++. +++++++++++|++++
T Consensus 417 ~--------gRis~a~~~~~~i~~~~~~l~~~l 441 (448)
T 3meb_A 417 G--------GRMSMCGLTESNCDYVAEAIHDAV 441 (448)
T ss_dssp G--------GEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred C--------cEEEEecCCHHHHHHHHHHHHHHH
Confidence 6 1999987 8889999999999876
No 74
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=100.00 E-value=1.2e-35 Score=295.28 Aligned_cols=314 Identities=18% Similarity=0.188 Sum_probs=245.9
Q ss_pred eEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccCHHH
Q 012785 96 IINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTGSTQ 174 (456)
Q Consensus 96 ~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~~~ 174 (456)
.|||+.|+++++.++.+.+.... .+.........|++..+ .+|++++++++.. +|.... +++|++|+|+++
T Consensus 32 ~idl~~~~~~~~~~~~v~~a~~~-~~~~~~~~~~~y~~~~~------~~l~~~la~~l~~~~g~~~~-~~~v~~~~G~~~ 103 (369)
T 3cq5_A 32 DIRLNTNENPYPPSEALVADLVA-TVDKIATELNRYPERDA------VELRDELAAYITKQTGVAVT-RDNLWAANGSNE 103 (369)
T ss_dssp SEECSSCCCCSCCCHHHHHHHHH-HHHHHGGGTTSCCCTTC------HHHHHHHHHHHHHHHCCCCC-GGGEEEESHHHH
T ss_pred ceeccCCCCCCCCCHHHHHHHHH-HHHhcccccccCCCccH------HHHHHHHHHhhhhcccCCCC-hHhEEECCChHH
Confidence 39999999987766555543221 12111111345777665 8999999999854 455543 578999999999
Q ss_pred HHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC------cccccc---C-CCeEEEEcCCCCCCcc
Q 012785 175 LFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD------AKRFNK---D-GPYIELVTSPNNPDGS 244 (456)
Q Consensus 175 al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d------~~~l~~---~-~~~~i~v~~P~NPtG~ 244 (456)
+++++++++.++|| +|++++|+|+.+...++..|.+++.++.| .+.++. . +++++++++||||||.
T Consensus 104 al~~~~~~l~~~gd----~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~ 179 (369)
T 3cq5_A 104 ILQQLLQAFGGPGR----TALGFQPSYSMHPILAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGD 179 (369)
T ss_dssp HHHHHHHHHCSTTC----EEEEEESSCTHHHHHHHHTTCEEEEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCC
T ss_pred HHHHHHHHhcCCCC----EEEEcCCChHHHHHHHHHcCCEEEEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCC
Confidence 99999999999999 99999999999999999999998877654 333432 2 6789999999999999
Q ss_pred cch-----HHhhhcCcEEEeeecCCCCCCC-C-C--CCCCC-CcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHh
Q 012785 245 VRQ-----SVVNRSGGILVHDLAYYWPQYT-S-I--TYPAD-HDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE 314 (456)
Q Consensus 245 ~~~-----~l~~~~~~~iI~De~y~~~~~~-~-~--~~~~~-~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~ 314 (456)
+++ ++++.+++++|+||+|.+..+. + . ....+ ++++++||||.+|++|+|+||++++ +++++.+.....
T Consensus 180 ~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~ 258 (369)
T 3cq5_A 180 VTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVAN-PAFIDAVMLVRL 258 (369)
T ss_dssp CCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEEC-THHHHHHHTTSC
T ss_pred CCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeC-HHHHHHHHHcCC
Confidence 988 3788888999999999864321 1 1 12345 8899999999999999999999997 888888876654
Q ss_pred hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCC
Q 012785 315 LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQ 394 (456)
Q Consensus 315 ~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~ 394 (456)
+++++++.|.++.++|+. .+++++.+++++++++.+.+.|++.+ +.+.++ +
T Consensus 259 --~~~~~~~~~~a~~~~l~~------------~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~-~------------- 309 (369)
T 3cq5_A 259 --PYHLSALSQAAAIVALRH------------SADTLGTVEKLSVERVRVAARLEELG-YAVVPS-E------------- 309 (369)
T ss_dssp --TTCSCHHHHHHHHHHHHT------------HHHHHTHHHHHHHHHHHHHHHHHHHT-CEEECC-S-------------
T ss_pred --CCCCCHHHHHHHHHHhcC------------HHHHHHHHHHHHHHHHHHHHHHHhCC-CEECCC-C-------------
Confidence 567999999999999972 45788899999999999999998754 444432 2
Q ss_pred CceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 395 PAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 395 ~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
++|+|++++.+...+.+.|.++||.++|| + .++++||+++ +++++++++++|+++++
T Consensus 310 ~~~~~~~~~~~~~~l~~~l~~~gi~v~~~---~-~~~~iRis~~-~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 310 SNFVFFGDFSDQHAAWQAFLDRGVLIRDV---G-IAGHLRTTIG-VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp SSEEEEECCSSHHHHHHHHHHTTEECBCC---S-CTTEEEEECC-CHHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCHHHHHHHHHHCCEEEEEC---C-CCCeEEEEeC-CHHHHHHHHHHHHHHHh
Confidence 23789888655667778888999999998 2 3689999996 78999999999998763
No 75
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=100.00 E-value=1.5e-35 Score=290.63 Aligned_cols=302 Identities=17% Similarity=0.231 Sum_probs=235.6
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
..+|+|+.|+++++.++.+.+... ..+.. .....|++. | .+++|++++++++.. .. ++++|++|+|++
T Consensus 19 ~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~--~~~~~y~~~-~-----~~~lr~~la~~~~~~--~~-~~~~v~~~~G~~ 86 (335)
T 1uu1_A 19 RDKTYLALNENPFPFPEDLVDEVF-RRLNS--DALRIYYDS-P-----DEELIEKILSYLDTD--FL-SKNNVSVGNGAD 86 (335)
T ss_dssp CCSEEESSCCCSSCCCHHHHHHHH-HTCCG--GGGGSCCCS-S-----CHHHHHHHHHHHTCS--SC-CGGGEEEESSHH
T ss_pred CcceECCCCCCCCCCCHHHHHHHH-HHhhh--hhhhcCCCC-c-----hHHHHHHHHHHcCCC--CC-CHHHEEEcCChH
Confidence 367999999998766665554322 11211 113457664 5 599999999999732 22 357999999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc------cccccCCCeEEEEcCCCCCCcccch
Q 012785 174 QLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA------KRFNKDGPYIELVTSPNNPDGSVRQ 247 (456)
Q Consensus 174 ~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~------~~l~~~~~~~i~v~~P~NPtG~~~~ 247 (456)
++++++++++ || +|+++ |+|+.+...++..|.+++.++.|. +.+ .+++++++++||||||.+++
T Consensus 87 ~al~~~~~~~---gd----~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l--~~~~~v~l~~p~nptG~~~~ 156 (335)
T 1uu1_A 87 EIIYVMMLMF---DR----SVFFP-PTYSCYRIFAKAVGAKFLEVPLTKDLRIPEVNV--GEGDVVFIPNPNNPTGHVFE 156 (335)
T ss_dssp HHHHHHHHHS---SE----EEECS-SSCHHHHHHHHHHTCEEEECCCCTTSCCCCCCC--CTTEEEEEESSCTTTCCCCC
T ss_pred HHHHHHHHHh---CC----cEEEC-CCcHHHHHHHHHcCCeEEEeccCCCCCCCHHHc--CCCCEEEEeCCCCCCCCCCC
Confidence 9999999988 78 99999 999999999999999998777543 333 46789999999999999988
Q ss_pred H-----HhhhcCcEEEeeecCCCCCC---CCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCc
Q 012785 248 S-----VVNRSGGILVHDLAYYWPQY---TSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIG 319 (456)
Q Consensus 248 ~-----l~~~~~~~iI~De~y~~~~~---~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~ 319 (456)
. +++..| ++|+||+|.+... .......+++++++||||.+|++|+|+||++++ +++++++..... +++
T Consensus 157 ~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~~--~~~ 232 (335)
T 1uu1_A 157 REEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVAS-EKFIDAYNRVRL--PFN 232 (335)
T ss_dssp HHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEEC-HHHHHHHHHHSC--TTC
T ss_pred HHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeC-HHHHHHHHHhcC--CCC
Confidence 3 666668 8999999984211 122234568999999999999999999999996 999999887754 578
Q ss_pred CChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEE
Q 012785 320 VSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAW 399 (456)
Q Consensus 320 ~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~ 399 (456)
++++.|.++.++|+. .+++++.+++++++++.+.+.|++.+ +.+. +.++ +|+|
T Consensus 233 ~~~~~~~~~~~~l~~------------~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~-~~~~-------------~~~~ 285 (335)
T 1uu1_A 233 VSYVSQMFAKVALDH------------REIFEERTKFIVEERERMKSALREMG-YRIT-DSRG-------------NFVF 285 (335)
T ss_dssp SCHHHHHHHHHHHHT------------HHHHHHHHHHHHHHHHHHHHHHHHHT-CCBC-CCCS-------------SEEE
T ss_pred cCHHHHHHHHHHhCC------------HHHHHHHHHHHHHHHHHHHHHHHHCC-cEEc-CCCC-------------eEEE
Confidence 999999999999982 35788889999999999999998874 4433 2333 3899
Q ss_pred eecCc-cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 400 LKCEQ-EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 400 ~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
++++. +.+.+.+.|.++||.++| .++++||+++ +++++++++++|++++
T Consensus 286 ~~~~~~~~~~~~~~l~~~gi~v~~------~~~~iRis~~-~~~~i~~~~~~l~~~~ 335 (335)
T 1uu1_A 286 VFMEKEEKERLLEHLRTKNVAVRS------FREGVRITIG-KREENDMILRELEVFK 335 (335)
T ss_dssp EECCTHHHHHHHHHHHHHTEEEEE------ETTEEEEECC-CHHHHHHHHHHHHCC-
T ss_pred EECCCCCHHHHHHHHHHCCEEEEE------CCCeEEEEeC-CHHHHHHHHHHHHhhC
Confidence 99875 456677778889999999 2679999995 5678999999998763
No 76
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=100.00 E-value=2.2e-39 Score=324.81 Aligned_cols=322 Identities=15% Similarity=0.185 Sum_probs=253.8
Q ss_pred CeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccCHH
Q 012785 95 RIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTGST 173 (456)
Q Consensus 95 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~~ 173 (456)
++|||+.|+|++++++.+.+... ..+..+ ...|++.. .++++++++++.. +|.... +++|++|+|++
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~---~~~y~~~~-------~~l~~~la~~l~~~~g~~~~-~~~v~~~~g~~ 99 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIH-DYAEQL---VYGYTYAS-------DELLQAVLDWEKSEHQYSFD-KEDIVFVEGVV 99 (392)
Confidence 78999999998887765554322 112121 23566542 8999999999854 454443 57999999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc---------Ccccccc----CCCeEEEEcCCCC
Q 012785 174 QLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG---------DAKRFNK----DGPYIELVTSPNN 240 (456)
Q Consensus 174 ~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~---------d~~~l~~----~~~~~i~v~~P~N 240 (456)
+++.++++++..+|| +|+++.|+|+.+...++..|.+++.++. |.+.++. .+++++++++|||
T Consensus 100 ~a~~~~~~~~~~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~n 175 (392)
T 3b1d_A 100 PAISIAIQAFTKEGE----AVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHN 175 (392)
Confidence 999999999999999 9999999999999999999988876554 3444433 3568888999999
Q ss_pred CCcccch--------HHhhhcCcEEEeeecCCCCCC-----CCCCC--C--CCCcEEEecCccccCCCCceEEEEEEeCH
Q 012785 241 PDGSVRQ--------SVVNRSGGILVHDLAYYWPQY-----TSITY--P--ADHDLMLFTVSKSTGHAGTRIGWALVKDM 303 (456)
Q Consensus 241 PtG~~~~--------~l~~~~~~~iI~De~y~~~~~-----~~~~~--~--~~~~i~i~S~SK~~g~~G~RiG~l~~~~~ 303 (456)
|||.+++ ++|+++|+++|+||+|.+..+ .++.. . .+++++++||||.+|++|+|+||++++++
T Consensus 176 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~ 255 (392)
T 3b1d_A 176 PGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENP 255 (392)
Confidence 9999987 278899999999999986332 12221 1 56899999999999999999999999745
Q ss_pred HHHHHHHHHHhhcc-CcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh-cCCccccCCCC
Q 012785 304 EVAKKMTKYIELNT-IGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK-SGLFSVPELPS 381 (456)
Q Consensus 304 ~~~~~l~~~~~~~~-~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~g 381 (456)
++++.+.......+ .++++++|.++.++|+ ++ ++++++.++.++++++.+.+.|++ ++.+.+.++.|
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~--------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 324 (392)
T 3b1d_A 256 TLCAQFKHQQLVNNHHEVSSLGYIATETAYR---YG--------KPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQG 324 (392)
Confidence 68888888766544 3578899999988887 22 467888999999999999999987 56677777777
Q ss_pred cccccccccCCCCCceEEeecCc---cHHHHHHHH-HhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 382 QFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFL-KGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 382 ~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l-~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
++ |+|++++. +...+.+.| +++||.++||..|+. .++++||+++.+++++++++++|+++++
T Consensus 325 ~~-------------~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 325 TY-------------LIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAAPKSLVEEICKRIVCCLP 391 (392)
Confidence 77 78888863 345566666 489999999999973 5789999998888999999999998764
No 77
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=100.00 E-value=8e-36 Score=300.74 Aligned_cols=322 Identities=15% Similarity=0.100 Sum_probs=239.9
Q ss_pred CCCCeEEecCCCC-C----CCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHH-HhcCccCCCce
Q 012785 92 GGERIINVDHGDP-T----MYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAITENHH 165 (456)
Q Consensus 92 ~~~~~i~l~~g~p-~----~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~ 165 (456)
.++++|||+.|+| + ..+++.+.+... ..+.. ......|.+..| .++||+++++++. ..|..+. +++
T Consensus 28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~-~~~~~-~~~~~~y~~~~g-----~~~lr~~la~~~~~~~~~~~~-~~~ 99 (412)
T 1ajs_A 28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQ-RIANN-SSLNHEYLPILG-----LAEFRTCASRLALGDDSPALQ-EKR 99 (412)
T ss_dssp CCTTCEECCSCCCCCTTSCCCCCHHHHHHHH-HHHTC-TTCCCCCCCTTC-----CHHHHHHHHHHHHCTTCHHHH-TTC
T ss_pred CCCCceeeccceecCCCCCccccHHHHHHHH-HhhhC-hhhccCCCCCCC-----CHHHHHHHHHHHhcCCCCccC-CCc
Confidence 4567899999986 2 122333443221 11111 112345877777 5999999999994 3343333 468
Q ss_pred EEE--ccCHHHHHHHHHH--HhcCCC-----CCCCcEEEEeCCCCCChhhhhhhcCCe-Eeeecc--------Ccccccc
Q 012785 166 IVV--GTGSTQLFQAALY--ALSSQD-----ASEPISVVSAAPYYSSYPSITDCVKSR-LYKWAG--------DAKRFNK 227 (456)
Q Consensus 166 I~~--t~G~~~al~~~~~--~l~~~g-----d~~~~~Vlv~~P~y~~~~~~~~~~g~~-~~~~~~--------d~~~l~~ 227 (456)
|++ |+|++++++++++ .++.+| | +|+++.|+|+.+...++..|.+ ++.++. |.+.++.
T Consensus 100 v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d----~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~ 175 (412)
T 1ajs_A 100 VGGVQSLGGTGALRIGAEFLARWYNGTNNKDT----PVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLS 175 (412)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCS----CEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHHhCcCcCCCCC----eEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHH
Confidence 999 9999999999965 445788 8 9999999999999999999999 887765 3333332
Q ss_pred ------CCCeEEEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCC-------CCC---CCCCCcEEEec
Q 012785 228 ------DGPYIELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT-------SIT---YPADHDLMLFT 283 (456)
Q Consensus 228 ------~~~~~i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~-------~~~---~~~~~~i~i~S 283 (456)
.+++++++++||||||.+++ ++|+++|+++|+||+|.+..+. ++. ...+++|+++|
T Consensus 176 ~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 255 (412)
T 1ajs_A 176 DLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQS 255 (412)
T ss_dssp HHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEE
T ss_pred HHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEe
Confidence 15678888999999999987 2788999999999999875443 121 23578999999
Q ss_pred CccccCCCCceEEEEEE---eCHH----HHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHH
Q 012785 284 VSKSTGHAGTRIGWALV---KDME----VAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQ 356 (456)
Q Consensus 284 ~SK~~g~~G~RiG~l~~---~~~~----~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~ 356 (456)
|||.+|++|+|+||+++ + ++ +++.+.........+++++.|.++.++|+...... .+++++++.+++
T Consensus 256 ~sK~~~~~G~riG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~-----~~~~~~~~~~~~ 329 (412)
T 1ajs_A 256 FSKNFGLYNERVGNLTVVAKE-PDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFH-----EWTGNVKTMADR 329 (412)
T ss_dssp CTTTSCCGGGCEEEEEEECSS-HHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHH-----HHHHHHHHHHHH
T ss_pred cccccCCCCcceEEEEEecCC-HHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhH-----HHHHHHHHHHHH
Confidence 99999988999999999 5 76 44545554333444579999999999997210000 013578899999
Q ss_pred HHHHHHHHHHHHHhcC---CccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeE
Q 012785 357 MSTRWKQLRMAVQKSG---LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYV 433 (456)
Q Consensus 357 ~~~~~~~l~~~L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~i 433 (456)
++++++.+.+.|++++ .+.+..+.+++ |+|++++ .+.+..+++++||.++|+ +
T Consensus 330 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~-------------~~~~~~~--~~~~~~~l~~~gv~v~~~---------~ 385 (412)
T 1ajs_A 330 ILSMRSELRARLEALKTPGTWNHITDQIGM-------------FSFTGLN--PKQVEYLINQKHIYLLPS---------G 385 (412)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHCCSS-------------EEECCCC--HHHHHHHHHTTCEECCTT---------S
T ss_pred HHHHHHHHHHHHHhhCCCCCeeEEcCCCce-------------EEEeCCC--HHHHHHHHHhCCEEecCC---------c
Confidence 9999999999999875 35666666776 8998775 567778888999999984 4
Q ss_pred EEEecC-ChhHHHHHHHHHHhhh
Q 012785 434 RISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 434 Ris~~~-~~e~i~~~l~~L~~~l 455 (456)
||+++. +++++++++++|++++
T Consensus 386 Ris~~~~~~~~i~~~~~~l~~~l 408 (412)
T 1ajs_A 386 RINMCGLTTKNLDYVATSIHEAV 408 (412)
T ss_dssp EEEGGGCCTTTHHHHHHHHHHHH
T ss_pred EEEeeeCCHHHHHHHHHHHHHHH
Confidence 999985 8999999999999876
No 78
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=100.00 E-value=3.4e-36 Score=301.61 Aligned_cols=321 Identities=15% Similarity=0.123 Sum_probs=237.2
Q ss_pred CCCeEEecCCC---CCC--CchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEE
Q 012785 93 GERIINVDHGD---PTM--YEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIV 167 (456)
Q Consensus 93 ~~~~i~l~~g~---p~~--~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~ 167 (456)
++++|||+.|+ |+. ++++.+.+... ..+... ....|++..| .++||+++++++...+....++++|+
T Consensus 25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~-~~~~~~--~~~~y~~~~g-----~~~lr~~la~~~~~~~~~~~~~~~v~ 96 (396)
T 2q7w_A 25 RPGKINLGIGVYKDETGKTPVLTSVKKAEQ-YLLENE--TTKNYLGIDG-----IPEFGRCTQELLFGKGSALINDKRAR 96 (396)
T ss_dssp ---CEESSCCSCCCTTSCCCCCHHHHHHHH-HHHHHC--CCCCCCCTTC-----CHHHHHHHHHHHHCTTCHHHHTTCEE
T ss_pred CCCceecccccccCCCCCccCcHHHHHHHH-hhcCcc--cccCCCCCCC-----CHHHHHHHHHHHhcCCCCccccccEE
Confidence 45789999998 333 33343443221 111111 1335877777 59999999999954332211356898
Q ss_pred E--ccCHHHHHHHHHHHhc--CCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc--------Ccccccc----C--C
Q 012785 168 V--GTGSTQLFQAALYALS--SQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG--------DAKRFNK----D--G 229 (456)
Q Consensus 168 ~--t~G~~~al~~~~~~l~--~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~--------d~~~l~~----~--~ 229 (456)
+ |+|++++++++++++. .+|| +|+++.|+|+.+...++..|.+++.++. |.+.++. . +
T Consensus 97 ~~~~~g~~~a~~~~~~~~~~~~~gd----~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 172 (396)
T 2q7w_A 97 TAQTPGGTGALRVAADFLAKNTSVK----RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAG 172 (396)
T ss_dssp EEEESHHHHHHHHHHHHHHHHSCCC----EEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTT
T ss_pred EEecccchhhHHHHHHHHHHhCCCC----EEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCCCC
Confidence 8 9999999999998763 6899 9999999999999999999999887776 3334422 1 3
Q ss_pred CeEEEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCC------CCC---CCCCCcEEEecCccccCCCC
Q 012785 230 PYIELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT------SIT---YPADHDLMLFTVSKSTGHAG 292 (456)
Q Consensus 230 ~~~i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~------~~~---~~~~~~i~i~S~SK~~g~~G 292 (456)
++++++++||||||.+++ ++|+++|+++|+||+|.+..+. ++. ...+++++++||||.+|++|
T Consensus 173 ~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 252 (396)
T 2q7w_A 173 DVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYN 252 (396)
T ss_dssp CEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGG
T ss_pred CEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccc
Confidence 578888999999999987 2788999999999999875442 121 12478999999999999999
Q ss_pred ceEEEEEE--eCH----HHHHHHHHHHhhccCcCChHHHHHHHHHHHhhh-CCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 293 TRIGWALV--KDM----EVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVS-DSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 293 ~RiG~l~~--~~~----~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
+|+||+++ +++ ++++.+.........+++++.|.++.++|+... .. .+++++++.++.++++++.+.
T Consensus 253 ~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~------~~~~~~~~~~~~~~~~~~~l~ 326 (396)
T 2q7w_A 253 ERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRA------IWEQELTDMRQRIQRMRQLFV 326 (396)
T ss_dssp GCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHH------HHHHHHHHC-CHHHHHHHHHH
T ss_pred cccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 99999997 346 455555554443445569999999999887210 00 014678889999999999999
Q ss_pred HHHHhcC---CccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC-Ch
Q 012785 366 MAVQKSG---LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD-RD 441 (456)
Q Consensus 366 ~~L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-~~ 441 (456)
+.|++.+ .+.+..|.+++ |+|++++ .+.+.++++++||.+.|| +||+++. ++
T Consensus 327 ~~L~~~~~~~~~~~~~~~~~~-------------~~~~~~~--~~~~~~~l~~~gv~v~~~---------~Ris~~~~~~ 382 (396)
T 2q7w_A 327 NTLQEKGANRDFSFIIKQNGM-------------FSFSGLT--KEQVLRLREEFGVYAVAS---------GRVNVAGMTP 382 (396)
T ss_dssp HHHHHTTCCSCCTHHHHCCSS-------------EEECCCC--HHHHHHHHHHHCEECCTT---------CEEEGGGCCT
T ss_pred HHHHhcCCCCCcceecCCCce-------------EEEecCC--HHHHHHHHHhcCeeecCC---------ceEEEeecCH
Confidence 9999875 36666667777 8898875 456888888999999984 5999986 89
Q ss_pred hHHHHHHHHHHhhh
Q 012785 442 ENYNLFVQRLSKIL 455 (456)
Q Consensus 442 e~i~~~l~~L~~~l 455 (456)
+++++++++|++++
T Consensus 383 e~i~~~~~~l~~~l 396 (396)
T 2q7w_A 383 DNMAPLCEAIVAVL 396 (396)
T ss_dssp TTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999874
No 79
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=100.00 E-value=5.4e-36 Score=301.29 Aligned_cols=320 Identities=14% Similarity=0.100 Sum_probs=230.5
Q ss_pred CCeEEecCC---CCCCCch--hHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 94 ERIINVDHG---DPTMYEK--YWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 94 ~~~i~l~~g---~p~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
.+.|||++| |++..++ +.++++.. ..+..+.. ..|.+..| .++||+++++++....... .....+.
T Consensus 44 ~~kinLgvG~y~d~~g~~~vl~~Vk~A~~-~~~~~~~~--~~Y~p~~G-----~p~lr~aia~~~~g~~~~~-~~~~~~q 114 (420)
T 4h51_A 44 GPKANLVIGAYRDEQGRPYPLRVVRKAEQ-LLLDMNLD--YEYLPISG-----YQPFIDEAVKIIYGNTVEL-ENLVAVQ 114 (420)
T ss_dssp SSCEECCSCCCBCTTSCBCCCHHHHHHHH-HHHHTTCC--CCCCCTTC-----CHHHHHHHHHHHHC---CG-GGEEEEE
T ss_pred CCCEEeecCcccCCCCCCCCCHHHHHHHH-HHhcCCCC--CCCCCcCC-----hHHHHHHHHHHhcCCCccc-cccceee
Confidence 347999999 4444333 33443321 22223321 25999999 4999999999873211111 1123456
Q ss_pred ccCHHHHHHHHHHHh----cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEee-ec--------cCccccc------cCC
Q 012785 169 GTGSTQLFQAALYAL----SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYK-WA--------GDAKRFN------KDG 229 (456)
Q Consensus 169 t~G~~~al~~~~~~l----~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~-~~--------~d~~~l~------~~~ 229 (456)
|.|++.++..++..+ .++|| +|++++|+|++|..+++..|.+.+. ++ +|.+++. ..+
T Consensus 115 t~ggtga~~~a~~~l~~~~~~pgd----~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 190 (420)
T 4h51_A 115 TLSGTGAVSLGAKLLTRVFDAETT----PIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDG 190 (420)
T ss_dssp EEHHHHHHHHHHHHHTTTSCTTTS----CEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSS
T ss_pred ecCchHHHHHHHHHHHHhcCCCCC----EEEEecCCchhHHHHHHHcCCeEEEeeccccccccCCCHHHHHHHHhccCCC
Confidence 889998887776655 46899 9999999999999999999987542 21 2333332 235
Q ss_pred CeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCCCC----------CCCCCCcEEEecCccccCCC
Q 012785 230 PYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYTSI----------TYPADHDLMLFTVSKSTGHA 291 (456)
Q Consensus 230 ~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~~~----------~~~~~~~i~i~S~SK~~g~~ 291 (456)
++++++++||||||.++++ +|+++++++|+||+|.+..+... ....++++++.||||.|+++
T Consensus 191 ~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~ 270 (420)
T 4h51_A 191 SVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLY 270 (420)
T ss_dssp CEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCG
T ss_pred cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccc
Confidence 6788899999999999993 78999999999999997544221 13456899999999999999
Q ss_pred CceEEEEEEeCH------HHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 292 GTRIGWALVKDM------EVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 292 G~RiG~l~~~~~------~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
|+|+||++++.+ .+...+......+..+++...|.++..++....-. .+++++++.++++++++|+.+.
T Consensus 271 G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~-----~~~~~~~~~m~~r~~~~R~~l~ 345 (420)
T 4h51_A 271 SERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELR-----KEWEAELSAMAERIRTMRRTVY 345 (420)
T ss_dssp GGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998732 22333444555567888999999999988731110 1235678899999999999999
Q ss_pred HHHHhcC---CccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC-Ch
Q 012785 366 MAVQKSG---LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD-RD 441 (456)
Q Consensus 366 ~~L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-~~ 441 (456)
+.|++.+ .|....+++|| |.|+.++ .+++ ++|+++||.+.||. |||++. ++
T Consensus 346 ~~L~~~g~~~~~~~i~~q~Gm-------------F~~~gls--~e~v-~~L~e~~Vy~~~~g---------Ris~Agl~~ 400 (420)
T 4h51_A 346 DELLRLQTPGSWEHVINQIGM-------------FSFLGLS--KAQC-EYCQNHNIFITVSG---------RANMAGLTH 400 (420)
T ss_dssp HHHHHTTCSSCCTHHHHCCSS-------------EEECCCC--HHHH-HHHHHTTEECCTTC---------EEEGGGCCH
T ss_pred HHHHHhCCCCCCCeecCCCce-------------EEecCcC--HHHH-HHHHhCCEEEcCCC---------EEEeccCCH
Confidence 9999864 24444455566 9998884 3444 57889999999853 999987 99
Q ss_pred hHHHHHHHHHHhhhC
Q 012785 442 ENYNLFVQRLSKILS 456 (456)
Q Consensus 442 e~i~~~l~~L~~~l~ 456 (456)
++++.++++|.++++
T Consensus 401 ~ni~~~a~aI~~vvr 415 (420)
T 4h51_A 401 ETALMLAQTINDAVR 415 (420)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998874
No 80
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=100.00 E-value=4.3e-35 Score=295.48 Aligned_cols=322 Identities=12% Similarity=0.114 Sum_probs=238.6
Q ss_pred CCCCeEEecCCCC-CC----CchhHhhhccccc-ccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCc
Q 012785 92 GGERIINVDHGDP-TM----YEKYWQKVGDKTT-IVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENH 164 (456)
Q Consensus 92 ~~~~~i~l~~g~p-~~----~~~~~~~~~~~~~-~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~ 164 (456)
.+.++|||+.|+| +. .+++.+.+... . .+..+ ....|++..| .++||+++++++.. .|..+. ++
T Consensus 27 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~-~~~~~~~--~~~~y~~~~g-----~~~lr~~ia~~~~~~~~~~~~-~~ 97 (412)
T 1yaa_A 27 QRATKVDLGIGAYRDDNGKPWVLPSVKAAEK-LIHNDSS--YNHEYLGITG-----LPSLTSNAAKIIFGTQSDALQ-ED 97 (412)
T ss_dssp CCSSCEECSSCCCBCTTSCBCCCHHHHHHHH-HHHTCTT--CCCCCCCTTC-----CHHHHHHHHHHHHCTTCHHHH-TT
T ss_pred CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHH-hhhcCcc--cccCCCCCCC-----cHHHHHHHHHHHhcCCCCCCC-cc
Confidence 4567899999987 32 22333433221 1 12211 1235877778 59999999999953 443333 56
Q ss_pred eEEE--ccCHHHHHHHHH--HHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-C-------cccccc----C
Q 012785 165 HIVV--GTGSTQLFQAAL--YALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-D-------AKRFNK----D 228 (456)
Q Consensus 165 ~I~~--t~G~~~al~~~~--~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d-------~~~l~~----~ 228 (456)
+|++ |+|+++++++++ ..++.+|| +|++++|+|+.+...++..|.+++.++. | .+.++. .
T Consensus 98 ~i~~~~t~g~~~a~~~~~~~~~~~~~gd----~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 173 (412)
T 1yaa_A 98 RVISVQSLSGTGALHISAKFFSKFFPDK----LVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKA 173 (412)
T ss_dssp CEEEEEEEHHHHHHHHHHHHHHHHCTTC----CEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHS
T ss_pred eEEEEeccchHhHHHHHHHHHHHhCCCC----EEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhC
Confidence 8999 999999999984 34456899 9999999999999999999999887765 2 333322 2
Q ss_pred --CCeEEEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCC-------CCC---CCCC---CcEEEecCc
Q 012785 229 --GPYIELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT-------SIT---YPAD---HDLMLFTVS 285 (456)
Q Consensus 229 --~~~~i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~-------~~~---~~~~---~~i~i~S~S 285 (456)
+..++++++||||||.+++ ++|+++|+++|+||+|.+..+. ++. ...+ ++++++|||
T Consensus 174 ~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 253 (412)
T 1yaa_A 174 PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFA 253 (412)
T ss_dssp CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECT
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccC
Confidence 2345566999999999987 2688999999999999864332 221 1234 899999999
Q ss_pred cccCCCCceEEEEE--E----eCHH----HHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHH
Q 012785 286 KSTGHAGTRIGWAL--V----KDME----VAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNH 355 (456)
Q Consensus 286 K~~g~~G~RiG~l~--~----~~~~----~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~ 355 (456)
|.+|++|+|+||++ + ++++ +++.+.........+++.+.|.++.++|+...-.. .+++++++.++
T Consensus 254 K~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~-----~~~~~~~~~~~ 328 (412)
T 1yaa_A 254 KNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTE-----QWHKDMVTMSS 328 (412)
T ss_dssp TTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHH-----HHHHHHHHHHH
T ss_pred CCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHH-----HHHHHHHHHHH
Confidence 99997899999998 7 1366 78888775554556679999999999987210000 01357899999
Q ss_pred HHHHHHHHHHHHHHhcC---CccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCe
Q 012785 356 QMSTRWKQLRMAVQKSG---LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKY 432 (456)
Q Consensus 356 ~~~~~~~~l~~~L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~ 432 (456)
+++++++.+.+.|++++ .+.+..+.+++ |+|++++ .+.+..+++++||.+.| +
T Consensus 329 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~-------------~~~~~~~--~~~~~~~l~~~gi~v~~---------~ 384 (412)
T 1yaa_A 329 RITKMRHALRDHLVKLGTPGNWDHIVNQCGM-------------FSFTGLT--PQMVKRLEETHAVYLVA---------S 384 (412)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCTHHHHCCSS-------------EEECCCC--HHHHHHHHHHHCEECCT---------T
T ss_pred HHHHHHHHHHHHHHhhCCCCCeeeeccCceE-------------EEeeCCC--HHHHHHHHHhCCEEecc---------C
Confidence 99999999999999875 36666677777 8898774 45677778889999987 3
Q ss_pred EEEEecC-ChhHHHHHHHHHHhhh
Q 012785 433 VRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 433 iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
+||+++. +++++++++++|++++
T Consensus 385 ~Ris~~~~~~~~i~~~~~~l~~~~ 408 (412)
T 1yaa_A 385 GRASIAGLNQGNVEYVAKAIDEVV 408 (412)
T ss_dssp SEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred cEEEEccCCHhHHHHHHHHHHHHH
Confidence 6999986 8999999999998875
No 81
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=100.00 E-value=5.6e-35 Score=292.69 Aligned_cols=319 Identities=17% Similarity=0.136 Sum_probs=237.2
Q ss_pred CCCCeEEecCCCC---CC--CchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceE
Q 012785 92 GGERIINVDHGDP---TM--YEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHI 166 (456)
Q Consensus 92 ~~~~~i~l~~g~p---~~--~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I 166 (456)
.++.+|||+.|+| +. ++++.+.+... ..+... ....|++..| .++||+++++++...+. ++++|
T Consensus 24 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~-~~~~~~--~~~~y~~~~g-----~~~lr~~la~~~~~~~~---~~~~v 92 (394)
T 2ay1_A 24 PRQGKIDLGVGVYKDATGHTPIMRAVHAAEQ-RMLETE--TTKTYAGLSG-----EPEFQKAMGELILGDGL---KSETT 92 (394)
T ss_dssp CCTTCEECCCCSCCCTTSCCCCCHHHHHHHH-HHHHHC--CCCCCCCSSC-----CHHHHHHHHHHHHGGGC---CGGGE
T ss_pred CCccccccccceeeCCCCCccCcHHHHHHHH-HhcCCc--ccCCCCCCCC-----cHHHHHHHHHHHhCCCC---CcccE
Confidence 4567899999985 22 33344443221 111111 2345877777 59999999999843222 35789
Q ss_pred EE--ccCHHHHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc--------Ccccccc----C--
Q 012785 167 VV--GTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG--------DAKRFNK----D-- 228 (456)
Q Consensus 167 ~~--t~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~--------d~~~l~~----~-- 228 (456)
++ |+|++++++++++++.. +|| +|+++.|+|+.+...++..|.+++.++. |.+.++. .
T Consensus 93 ~~~~~~g~~~a~~~~~~~~~~~~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 168 (394)
T 2ay1_A 93 ATLATVGGTGALRQALELARMANPDL----RVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKK 168 (394)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHCTTC----CEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCT
T ss_pred EEEecCCchhHHHHHHHHHHhcCCCC----EEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHhCCC
Confidence 98 99999999999988754 898 9999999999999999999999887776 3333322 1
Q ss_pred CCeEEEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCC------CCC---CCCCCcEEEecCccccCCC
Q 012785 229 GPYIELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT------SIT---YPADHDLMLFTVSKSTGHA 291 (456)
Q Consensus 229 ~~~~i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~------~~~---~~~~~~i~i~S~SK~~g~~ 291 (456)
+++++++++||||||.+++ ++|+++|+++|+||+|.+..+. ++. ...+++++++||||.+|++
T Consensus 169 ~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 248 (394)
T 2ay1_A 169 GDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIY 248 (394)
T ss_dssp TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCG
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCc
Confidence 3577888999999999987 2788999999999999975442 121 2246789999999999999
Q ss_pred CceEEEEEE--eCHHHHHHH----HHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 292 GTRIGWALV--KDMEVAKKM----TKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 292 G~RiG~l~~--~~~~~~~~l----~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
|+|+||+++ +++++++.+ .........+++++.|.++.++|+...... .+++++++++++++++++.+.
T Consensus 249 G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~-----~~~~~~~~~~~~~~~~~~~l~ 323 (394)
T 2ay1_A 249 RERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRA-----DWMAELEAVRSGMLRLREQLA 323 (394)
T ss_dssp GGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 347655443 333333445569999999999887310000 014678899999999999999
Q ss_pred HHHHhcC---CccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC-Ch
Q 012785 366 MAVQKSG---LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD-RD 441 (456)
Q Consensus 366 ~~L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-~~ 441 (456)
+.|++++ .+.+..+.+++ |+|++++ .+.+.++++++||.+.|| +||+++. ++
T Consensus 324 ~~L~~~~~~~~~~~~~~~~g~-------------~~~~~~~--~~~~~~~l~~~gi~v~~~---------~Ris~~~~~~ 379 (394)
T 2ay1_A 324 GELRDLSGSDRFGFVAEHRGM-------------FSRLGAT--PEQVKRIKEEFGIYMVGD---------SRINIAGLND 379 (394)
T ss_dssp HHHHHHHTSSTTTHHHHCCSS-------------EEECCCC--HHHHHHHHHHHCEECCTT---------CEEEGGGCCT
T ss_pred HHHHhcCCCCCeeEEcCCceE-------------EEeeCCC--HHHHHHHHHhCCEEecCC---------CeEEeecCCH
Confidence 9998864 35555566666 8998885 356788888999999984 4999975 89
Q ss_pred hHHHHHHHHHHhh
Q 012785 442 ENYNLFVQRLSKI 454 (456)
Q Consensus 442 e~i~~~l~~L~~~ 454 (456)
+++++++++|+++
T Consensus 380 ~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 380 NTIPILARAIIEV 392 (394)
T ss_dssp TTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHc
Confidence 9999999999876
No 82
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=100.00 E-value=2e-32 Score=274.60 Aligned_cols=318 Identities=11% Similarity=0.062 Sum_probs=239.2
Q ss_pred CCCCeEEecCCCC-CCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEc
Q 012785 92 GGERIINVDHGDP-TMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVG 169 (456)
Q Consensus 92 ~~~~~i~l~~g~p-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t 169 (456)
.++.+|||+.|+| .+++++.+.+... ..+.........|....| .+++++++++++.. .| .+++++|
T Consensus 41 ~g~~~idl~~~~~~~~~~~~~v~~a~~-~~~~~~~~~~~~~~~~~g-----~~~~~~~l~~~la~~~g-----~~~v~~~ 109 (398)
T 3a2b_A 41 DGRRVLMFGSNSYLGLTTDTRIIKAAQ-DALEKYGTGCAGSRFLNG-----TLDIHVELEEKLSAYVG-----KEAAILF 109 (398)
T ss_dssp TTEEEEECSCSCTTCGGGCHHHHHHHH-HHHHHHCSCCCSBTTTTC-----CCHHHHHHHHHHHHHHT-----CSEEEEE
T ss_pred CCceEEEeecccccCCCCCHHHHHHHH-HHHHHcCCCCCCcCcccC-----CcHHHHHHHHHHHHHhC-----CCcEEEE
Confidence 3457899999998 5534444443222 112221111234566667 47888888887743 33 2589999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-Ccccccc---C----CCeEEEEcCCCCC
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-DAKRFNK---D----GPYIELVTSPNNP 241 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d~~~l~~---~----~~~~i~v~~P~NP 241 (456)
+|+++++.++++++.++|| .|++++|+|+.+...++..|.+++.++. |.+.++. . +++++++++||||
T Consensus 110 ~ggt~a~~~~~~~~~~~gd----~V~~~~p~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~v~~~~~~np 185 (398)
T 3a2b_A 110 STGFQSNLGPLSCLMGRND----YILLDERDHASIIDGSRLSFSKVIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSM 185 (398)
T ss_dssp SSHHHHHHHHHHHSSCTTC----EEEEETTCCHHHHHHHHHSSSEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESBCTT
T ss_pred CCHHHHHHHHHHHHhCCCC----EEEECCccCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHhhccCCceEEEEeCCCCC
Confidence 9999999999999999999 9999999999999999999999988875 5555532 1 6789999999999
Q ss_pred Ccccch-----HHhhhcCcEEEeeecCCCCCC----CCCC---CCCCC-cEEEecCccccCCCCceEEEEEEeCHHHHHH
Q 012785 242 DGSVRQ-----SVVNRSGGILVHDLAYYWPQY----TSIT---YPADH-DLMLFTVSKSTGHAGTRIGWALVKDMEVAKK 308 (456)
Q Consensus 242 tG~~~~-----~l~~~~~~~iI~De~y~~~~~----~~~~---~~~~~-~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~ 308 (456)
||.+++ ++|+++|+++|+||+|....+ .++. ...++ +++++||||.++++| ||++++ +++++.
T Consensus 186 tG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~~~~-~~~~~~ 261 (398)
T 3a2b_A 186 EGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG---GFVAGD-ADVIDF 261 (398)
T ss_dssp TCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEEC-HHHHHH
T ss_pred CCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCCC---cEEEeC-HHHHHH
Confidence 999987 389999999999999975322 1111 12345 799999999999778 999996 999998
Q ss_pred HHHH-HhhccCcCChHHHHH-HHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccc
Q 012785 309 MTKY-IELNTIGVSKDSQLR-AAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTF 386 (456)
Q Consensus 309 l~~~-~~~~~~~~s~~~q~~-a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~ 386 (456)
+... ......+.+.+.|.+ +.++|+. .+++++.++.++++++.+.+.|++.+ +.+..+.
T Consensus 262 l~~~~~~~~~~~~~~~~~~a~~~~~l~~------------~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~------ 322 (398)
T 3a2b_A 262 LKHNARSVMFSASMTPASVASTLKALEI------------IQNEPEHIEKLWKNTDYAKAQLLDHG-FDLGATE------ 322 (398)
T ss_dssp HHHHCHHHHSSBCCCHHHHHHHHHHHHH------------HHHCTHHHHHHHHHHHHHHHHHHHTT-CCBCSCC------
T ss_pred HHHhcccceecCCCCHHHHHHHHHHHHH------------HhhCHHHHHHHHHHHHHHHHHHHhcC-CCcCCCC------
Confidence 8875 333455566677764 5577763 23456788899999999999999873 4444433
Q ss_pred ccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCC--CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 387 LGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGF--SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 387 ~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~--~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
++|+|+.++. +...+.+.|.++||.++||..|+. .++++||+++. +++++++++++|++++
T Consensus 323 --------g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l 389 (398)
T 3a2b_A 323 --------SPILPIFIRSNEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVF 389 (398)
T ss_dssp --------SSEEEEECCCHHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred --------CCEEEEEcCCHHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 3379999874 456677778888999999998853 36899999985 8999999999999875
No 83
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.98 E-value=2.1e-31 Score=268.12 Aligned_cols=319 Identities=11% Similarity=0.063 Sum_probs=225.9
Q ss_pred EEecCCCCCCCchhHhhhccccccc-ccCccccccccCCCCcccCCCH---HHHHHHHHHHHHhcCccCCCceEEEccCH
Q 012785 97 INVDHGDPTMYEKYWQKVGDKTTIV-IPGWQSLSYFSDVRNLCWFLEP---EFAKEVVRLHKVVGNAITENHHIVVGTGS 172 (456)
Q Consensus 97 i~l~~g~p~~~~~~~~~~~~~~~~~-~~~~~~~~~y~~~~G~~~~~~~---~lr~aia~~~~~~g~~~~~~~~I~~t~G~ 172 (456)
..++.++|++.+++.+........- ..+......|+. .| .+ +|+++++++++. +++++++|+
T Consensus 21 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~-----~~~~~~l~~~ia~~~g~--------~~~i~~~~g 86 (404)
T 1e5e_A 21 QFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTR-LG-----NPTVSNLEGKIAFLEKT--------EACVATSSG 86 (404)
T ss_dssp TTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTT-TC-----CHHHHHHHHHHHHHHTC--------SEEEEESSH
T ss_pred CCCCcCCCCcCCCccccCCHHHHHHhhcCCcCCccccC-Cc-----ChHHHHHHHHHHHHhCC--------CcEEEeCCh
Confidence 4688999999887655443211110 011111234766 44 36 899999999863 367777777
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh----hhhhcCCeEeeecc-Ccccccc---CCCeEEEEcCCCCCCcc
Q 012785 173 TQLFQAALYALSSQDASEPISVVSAAPYYSSYPS----ITDCVKSRLYKWAG-DAKRFNK---DGPYIELVTSPNNPDGS 244 (456)
Q Consensus 173 ~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~----~~~~~g~~~~~~~~-d~~~l~~---~~~~~i~v~~P~NPtG~ 244 (456)
++++.+++.+++++|| +|++++|+|+.+.. .++..|.+++.++. |.+.++. .++++|++++||||||.
T Consensus 87 ~~ai~~~~~~l~~~gd----~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~t~~v~l~~p~NptG~ 162 (404)
T 1e5e_A 87 MGAIAATVLTILKAGD----HLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLK 162 (404)
T ss_dssp HHHHHHHHHHHCCTTC----EEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTTEEEEEEESSCTTTCC
T ss_pred HHHHHHHHHHHhCCCC----EEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCcEEEEECCCCCCCc
Confidence 8999999999999999 99999999999888 78888999988876 5555543 36799999999999999
Q ss_pred cch-----HHhhh-cCcEEEeeecCCCCCC-CCCCCCCCCcEEEecCccccCCCCceE-EEEEEeCHHHHH-HHHHHHhh
Q 012785 245 VRQ-----SVVNR-SGGILVHDLAYYWPQY-TSITYPADHDLMLFTVSKSTGHAGTRI-GWALVKDMEVAK-KMTKYIEL 315 (456)
Q Consensus 245 ~~~-----~l~~~-~~~~iI~De~y~~~~~-~~~~~~~~~~i~i~S~SK~~g~~G~Ri-G~l~~~~~~~~~-~l~~~~~~ 315 (456)
+++ ++|++ +|+++|+||+|.+..+ .++ ..+++++++|+||.++.+|+|+ ||++++ +++++ ++......
T Consensus 163 v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~~--~~~~di~~~S~sK~~~~~g~ri~G~~~~~-~~~~~~~l~~~~~~ 239 (404)
T 1e5e_A 163 IIDMERVCKDAHSQEGVLVIADNTFCSPMITNPV--DFGVDVVVHSATKYINGHTDVVAGLICGK-ADLLQQIRMVGIKD 239 (404)
T ss_dssp CCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGG--GGTCSEEEEETTTTTTCSSCCCCEEEEEC-HHHHHHHHHTCCCC
T ss_pred ccCHHHHHHHHHhhcCCEEEEECCCchhhhCCcc--ccCCEEEEEcCccccCCCCCCeEEEEEEC-HHHHHHHHHHHHHh
Confidence 987 48999 9999999999997543 223 3478999999999999999998 999997 77777 77776554
Q ss_pred c-cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccc-cCC----CCcccccccc
Q 012785 316 N-TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSV-PEL----PSQFCTFLGR 389 (456)
Q Consensus 316 ~-~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~----~g~~~~~~~~ 389 (456)
. ..+.+++.|.++.+.|+. +....+...++.+.+.+.|++.+.+.. ..+ ..++ .+...
T Consensus 240 ~~g~~~~~~~~~~~~~~l~~---------------~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~-~~~~~ 303 (404)
T 1e5e_A 240 ITGSVISPHDAWLITRGLST---------------LNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGH-DIAKK 303 (404)
T ss_dssp CCCCCCCHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTH-HHHHH
T ss_pred CCCCCCCHHHHHHHHHhHhH---------------HHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccH-HHHHh
Confidence 4 456889999988888762 223344455666777777776542210 000 0011 00000
Q ss_pred cCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCC--------------------------CCCeEEEEecCChhH
Q 012785 390 AFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGF--------------------------SPKYVRISMLDRDEN 443 (456)
Q Consensus 390 ~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~--------------------------~~~~iRis~~~~~e~ 443 (456)
.....++|+.+++++..+.+.+++.+.|| +.+|..||. .++++|||++. |+
T Consensus 304 ~~~~~g~~~~~~~~~~~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~--e~ 380 (404)
T 1e5e_A 304 QMRMYGSMITFILKSGFEGAKKLLDNLKL-ITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI--ED 380 (404)
T ss_dssp HCSSCCSEEEEEETTHHHHHHHHHHTCSS-SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS--SC
T ss_pred hCCCCceEEEEEeCCCHHHHHHHHHhCCC-ceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC--CC
Confidence 00112455555887544667888999999 666665651 26899999976 78
Q ss_pred HHHHHHHHHhhh
Q 012785 444 YNLFVQRLSKIL 455 (456)
Q Consensus 444 i~~~l~~L~~~l 455 (456)
+++++++|++++
T Consensus 381 ~~~li~~l~~al 392 (404)
T 1e5e_A 381 ADELIADFKQGL 392 (404)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888765
No 84
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.97 E-value=7.6e-30 Score=255.15 Aligned_cols=282 Identities=13% Similarity=0.073 Sum_probs=216.8
Q ss_pred HHHHHHHHHHHHH-hcCccCCCc-eEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC--hhhhhhhcCCeEeee
Q 012785 143 PEFAKEVVRLHKV-VGNAITENH-HIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS--YPSITDCVKSRLYKW 218 (456)
Q Consensus 143 ~~lr~aia~~~~~-~g~~~~~~~-~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~--~~~~~~~~g~~~~~~ 218 (456)
.++++++++++.. .|. +++ +|++|+|+++++.+++.+++.+|| +|++++|+|+. +...++..|.+++.+
T Consensus 66 ~~~~~~~~~~la~~~g~---~~~~~v~~t~g~t~al~~~~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~~~g~~~~~v 138 (393)
T 1vjo_A 66 LALMDEIQSLLRYVWQT---ENPLTIAVSGTGTAAMEATIANAVEPGD----VVLIGVAGYFGNRLVDMAGRYGADVRTI 138 (393)
T ss_dssp HHHHHHHHHHHHHHHTC---CCSCEEEESSCHHHHHHHHHHHHCCTTC----EEEEEESSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHhCC---CCCcEEEEeCchHHHHHHHHHhccCCCC----EEEEEcCChhHHHHHHHHHHcCCceEEE
Confidence 5677777776643 343 346 899999999999999999999999 99999999999 888899999999887
Q ss_pred cc------Ccccccc---C-CCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEe
Q 012785 219 AG------DAKRFNK---D-GPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLF 282 (456)
Q Consensus 219 ~~------d~~~l~~---~-~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~ 282 (456)
+. |.+.++. . +++++++++|+||||.+++ ++|+++|+++|+||+|... ..++. ...+.+++++
T Consensus 139 ~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g-~~~~~~~~~~~di~~~ 217 (393)
T 1vjo_A 139 SKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLG-GVPIFLDAWGVDLAYS 217 (393)
T ss_dssp ECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTT-TSCCCTTTTTCSEEEC
T ss_pred ecCCCCCCCHHHHHHHHhhCCceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCcccc-CcCCcccccCccEEEE
Confidence 74 3444432 2 6789999999999999977 4899999999999999832 22221 2346689999
Q ss_pred cCccccCCCCceEEEEEEeCHHHHHHHHHH----H---------------hhccC-cCChHHHHHHHHHHHhhhCCCCCC
Q 012785 283 TVSKSTGHAGTRIGWALVKDMEVAKKMTKY----I---------------ELNTI-GVSKDSQLRAAKVLKVVSDSCKPS 342 (456)
Q Consensus 283 S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~----~---------------~~~~~-~~s~~~q~~a~~~L~~~~~~~~~~ 342 (456)
|+||.++.+| |+||++++ +++++.+... . ..... +.+.+.|.++.++|+.+.
T Consensus 218 s~sK~l~~~~-~~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~------ 289 (393)
T 1vjo_A 218 CSQKGLGCSP-GASPFTMS-SRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIA------ 289 (393)
T ss_dssp CSSSTTCSCS-SCEEEEEC-HHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHH------
T ss_pred cCcccccCCC-ceEEEEEC-HHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHH------
Confidence 9999998777 99999997 8888877532 0 01233 778899999999887421
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhC-CEE
Q 012785 343 GSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGN-KIL 419 (456)
Q Consensus 343 ~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~-gI~ 419 (456)
+.++++.+++++++++.+.+.|++. ++.+..+.+.. .++++++.++. +.+.+.+.|.++ ||.
T Consensus 290 ----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~~~gi~ 354 (393)
T 1vjo_A 290 ----QEGLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYR----------LPTLTTVCIPDGVDGKAVARRLLNEHNIE 354 (393)
T ss_dssp ----HHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGB----------CSSEEEEECCTTCCHHHHHHHHHHHHCEE
T ss_pred ----HccHHHHHHHHHHHHHHHHHHHHHc-CCcccCCcccc----------CCcEEEEEcCCCCCHHHHHHHHHhhCCEE
Confidence 3357788999999999999999987 45665554311 12367887752 456677777766 999
Q ss_pred eecCCCCCCCCCeEEEEe-c--CChhHHHHHHHHHHhhhC
Q 012785 420 TRSGKHFGFSPKYVRISM-L--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 420 v~pg~~fg~~~~~iRis~-~--~~~e~i~~~l~~L~~~l~ 456 (456)
++||..|.. ++++||++ + .+++++++++++|+++++
T Consensus 355 v~~g~~~~~-~~~iRis~~~~~~~~~~i~~~~~~l~~~l~ 393 (393)
T 1vjo_A 355 VGGGLGELA-GKVWRVGLMGFNSRKESVDQLIPALEQVLR 393 (393)
T ss_dssp CEECCGGGT-TTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred EecCccccC-CCEEEEeCCccCChHHHHHHHHHHHHHHhC
Confidence 999997753 78999994 3 366789999999999874
No 85
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.97 E-value=6.2e-30 Score=256.08 Aligned_cols=317 Identities=11% Similarity=0.080 Sum_probs=230.2
Q ss_pred CCCCeEEecCCCCCC-CchhHhhhccccccccc-Ccc-cccc--ccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceE
Q 012785 92 GGERIINVDHGDPTM-YEKYWQKVGDKTTIVIP-GWQ-SLSY--FSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHI 166 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~-~~~~~~~~~~~~~~~~~-~~~-~~~~--y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I 166 (456)
.++.+|||+.++|.. ..++.+.+... ..+.. +.. .... |+...+ ..+|+++++++++. ++.|
T Consensus 41 ~g~~~id~~~~~~~g~~~~~~v~~a~~-~~~~~~~~~~~~~~~~~g~~~~-----~~~l~~~la~~~~~-------~~~i 107 (399)
T 3tqx_A 41 GEKEVLNFCANNYLGLADHPALIKTAQ-TVVEQYGFGMASVRFICGTQTI-----HKELEKDISEFLGT-------DDTI 107 (399)
T ss_dssp TTEEEEECSSCCTTSCTTCHHHHHHHH-HHHHHHCSCCCSCCCCCCCBHH-----HHHHHHHHHHHHTC-------SEEE
T ss_pred CCeeEEEeeccCcccccCCHHHHHHHH-HHHHHhCCCCCCcCccccCchH-----HHHHHHHHHHHHCC-------CcEE
Confidence 456789999997743 33333433211 11111 100 0011 122222 37899999998863 3577
Q ss_pred EEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-Ccccccc---C------CCeEEEEc
Q 012785 167 VVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-DAKRFNK---D------GPYIELVT 236 (456)
Q Consensus 167 ~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d~~~l~~---~------~~~~i~v~ 236 (456)
++++| ++++..++.+++++|| .|+++.|+|+.+...++..|.+++.++. |.+.++. . ++++++++
T Consensus 108 ~~~sG-t~a~~~~l~~~~~~gd----~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~ 182 (399)
T 3tqx_A 108 LYSSC-FDANGGLFETLLGPED----AIISDELNHASIIDGIRLCKAQRYRYKNNAMGDLEAKLKEADEKGARFKLIATD 182 (399)
T ss_dssp EESCH-HHHHHTTHHHHCCTTC----EEEEETTCCHHHHHHHHSCCSEEEEECTTCTTHHHHHHHHHHTTTCSSEEEEEE
T ss_pred EECch-HHHHHHHHHHhcCCCC----EEEECCcccHHHHHHHHHcCCceeEeCCCCHHHHHHHHHhhhccCCCceEEEEe
Confidence 77777 6799999999999999 9999999999999999999999988774 5555432 1 68999999
Q ss_pred CCCCCCcccch-----HHhhhcCcEEEeeecCCC-C-CCC--CCC---C-CCCCcEEEecCccccCCCCceEEEEEEeCH
Q 012785 237 SPNNPDGSVRQ-----SVVNRSGGILVHDLAYYW-P-QYT--SIT---Y-PADHDLMLFTVSKSTGHAGTRIGWALVKDM 303 (456)
Q Consensus 237 ~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~-~-~~~--~~~---~-~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~ 303 (456)
+||||||.+++ ++|+++|+++|+||+|.. . ... +.. . ..+.+++++||||.++ |++.||++++ +
T Consensus 183 ~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~--g~~gG~~~~~-~ 259 (399)
T 3tqx_A 183 GVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALG--GASGGYTSGH-K 259 (399)
T ss_dssp SEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSC--SSCCEEEEEC-H
T ss_pred CCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcc--cCceEEEEcC-H
Confidence 99999999988 489999999999999952 1 111 111 1 2366899999999998 4455999996 9
Q ss_pred HHHHHHHHHHhh--ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCC
Q 012785 304 EVAKKMTKYIEL--NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPS 381 (456)
Q Consensus 304 ~~~~~l~~~~~~--~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g 381 (456)
++++.+...... .+.+.+++.+.++.+.++.. .++.++.+++++++++.+.+.|++.+ +.+.++.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~- 326 (399)
T 3tqx_A 260 EIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELL-----------KTEGPQLRKQLQENSRYFRAGMEKLG-FQLVPGN- 326 (399)
T ss_dssp HHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHH-----------HHTHHHHHHHHHHHHHHHHHHHHHHT-CCBCCCS-
T ss_pred HHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHH-----------hhccHHHHHHHHHHHHHHHHHHHHcC-CCcCCCC-
Confidence 999988876332 24467777777888877731 25678899999999999999999874 4443333
Q ss_pred cccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCC--CCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 382 QFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFG--FSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 382 ~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg--~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
++|+|+.++. +...+.+.|.++||.+.|+..++ .+.+++||+++ .+++++++++++|++++
T Consensus 327 -------------~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 393 (399)
T 3tqx_A 327 -------------HPIIPVMLGDAQLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVG 393 (399)
T ss_dssp -------------SSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred -------------CCEEEEEeCCHHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHH
Confidence 3378888864 45677788888999999875543 24579999996 48999999999999876
No 86
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.97 E-value=5.5e-30 Score=256.98 Aligned_cols=315 Identities=14% Similarity=0.125 Sum_probs=230.7
Q ss_pred CCCCeEEecCCCCCCC-chhHhhhccccccccc-Cc-ccccccc--CCCCcccCCCHHHHHHHHHHHHHhcCccCCCceE
Q 012785 92 GGERIINVDHGDPTMY-EKYWQKVGDKTTIVIP-GW-QSLSYFS--DVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHI 166 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~-~~~~~~~~~~~~~~~~-~~-~~~~~y~--~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I 166 (456)
.+...|||+.+.|... .++.+.+... ..+.. +. .....|+ ...+ ..+|+++++++++. + +.|
T Consensus 43 ~g~~~id~~~~~~~g~~~~~~v~~a~~-~~~~~~~~~~~~~~~~~g~~~~-----~~~l~~~la~~~g~------~-~~i 109 (401)
T 1fc4_A 43 DGSHVINFCANNYLGLANHPDLIAAAK-AGMDSHGFGMASVRFICGTQDS-----HKELEQKLAAFLGM------E-DAI 109 (401)
T ss_dssp TSCEEEECCCSCTTSCTTCHHHHHHHH-HHHHHHCSCCCSCHHHHCCBHH-----HHHHHHHHHHHHTC------S-EEE
T ss_pred CCccEEEeeccCcccccCCHHHHHHHH-HHHHHhCCCCCCCCcccCCcHH-----HHHHHHHHHHHhCC------C-cEE
Confidence 4567899999977432 2333433221 11111 11 0011232 1233 48999999999953 3 577
Q ss_pred EEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-Ccccccc---C------CCeEEEEc
Q 012785 167 VVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-DAKRFNK---D------GPYIELVT 236 (456)
Q Consensus 167 ~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d~~~l~~---~------~~~~i~v~ 236 (456)
++++| ++++..++++++++|| .|+++.|+|+.+...++..|.+++.++. |.+.++. . ++++|+++
T Consensus 110 ~~~sG-s~a~~~~~~~~~~~gd----~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~ 184 (401)
T 1fc4_A 110 LYSSC-FDANGGLFETLLGAED----AIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATD 184 (401)
T ss_dssp EESCH-HHHHHTTHHHHCCTTC----EEEEETTCCHHHHHHHHTSCSEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEE
T ss_pred EeCCh-HHHHHHHHHHHcCCCC----EEEEcchhHHHHHHHHHHcCCceEEECCCCHHHHHHHHHHhhccCCCceEEEEe
Confidence 77777 5688889999999999 9999999998888888989999988864 5555432 1 67899999
Q ss_pred CCCCCCcccch-----HHhhhcCcEEEeeecCC-CCCC-CC------CCCCCCCcEEEecCcccc-CCCCceEEEEEEeC
Q 012785 237 SPNNPDGSVRQ-----SVVNRSGGILVHDLAYY-WPQY-TS------ITYPADHDLMLFTVSKST-GHAGTRIGWALVKD 302 (456)
Q Consensus 237 ~P~NPtG~~~~-----~l~~~~~~~iI~De~y~-~~~~-~~------~~~~~~~~i~i~S~SK~~-g~~G~RiG~l~~~~ 302 (456)
+||||||.+++ ++|+++|+++|+||+|. +... .. .....+.+++++||||.+ |.+| ||++++
T Consensus 185 ~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~g---G~~~~~- 260 (401)
T 1fc4_A 185 GVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASG---GYTAAR- 260 (401)
T ss_dssp SEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSC---EEEEEC-
T ss_pred CCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCCC---EEEEcC-
Confidence 99999999987 48999999999999995 5321 11 111235689999999999 6555 999996
Q ss_pred HHHHHHHHHHHh--hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC
Q 012785 303 MEVAKKMTKYIE--LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELP 380 (456)
Q Consensus 303 ~~~~~~l~~~~~--~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 380 (456)
+++++.+..... ..+.+.+++.|.++.+.|+.+. + .++.+++++++++.+.+.|++.+ +.+. +.
T Consensus 261 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----------~-~~~~~~~~~~~~~~l~~~L~~~g-~~~~-~~ 326 (401)
T 1fc4_A 261 KEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVE-----------A-GSELRDRLWANARQFREQMSAAG-FTLA-GA 326 (401)
T ss_dssp HHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHH-----------T-CHHHHHHHHHHHHHHHHHHHHTT-CCBC-CS
T ss_pred HHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHh-----------c-CHHHHHHHHHHHHHHHHHHHHcC-Cccc-CC
Confidence 999998887542 2366889999999998887421 1 35678889999999999999874 4443 22
Q ss_pred CcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCC--CCCeEEEEec--CChhHHHHHHHHHHhh
Q 012785 381 SQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGF--SPKYVRISML--DRDENYNLFVQRLSKI 454 (456)
Q Consensus 381 g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~--~~~~iRis~~--~~~e~i~~~l~~L~~~ 454 (456)
.++|+|++++. +...+.+.|.++||.+++|..|+. ..+++||+++ .+++++++++++|+++
T Consensus 327 -------------~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 393 (401)
T 1fc4_A 327 -------------DHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRI 393 (401)
T ss_dssp -------------SSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred -------------CCCEEEEEcCChHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 33378998864 456677888889999999988764 3568999997 3899999999999987
Q ss_pred h
Q 012785 455 L 455 (456)
Q Consensus 455 l 455 (456)
+
T Consensus 394 ~ 394 (401)
T 1fc4_A 394 G 394 (401)
T ss_dssp H
T ss_pred H
Confidence 5
No 87
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.97 E-value=2.7e-29 Score=250.20 Aligned_cols=281 Identities=11% Similarity=0.069 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHH-hcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC--hhhhhhhcCCeEeeec
Q 012785 143 PEFAKEVVRLHKV-VGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS--YPSITDCVKSRLYKWA 219 (456)
Q Consensus 143 ~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~--~~~~~~~~g~~~~~~~ 219 (456)
.++++++++++.. .|.. ++++|++|+|+++++.+++.+++++|| +|++++|+|+. +...++..|++++.++
T Consensus 52 ~~~~~~~~~~la~~~g~~--~~~~v~~~~g~t~a~~~~~~~l~~~gd----~vl~~~~~~~~~~~~~~~~~~g~~~~~v~ 125 (386)
T 2dr1_A 52 RKVHMDTVERLREFLEVE--KGEVLLVPSSGTGIMEASIRNGVSKGG----KVLVTIIGAFGKRYKEVVESNGRKAVVLE 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCS--SSEEEEESSCHHHHHHHHHHHHSCTTC----EEEEEESSHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCC--CCcEEEEeCChHHHHHHHHHHhhcCCC----eEEEEcCCchhHHHHHHHHHhCCceEEEe
Confidence 5667777776643 4543 246899999999999999999999999 99999999998 8888899999988776
Q ss_pred c------Cccccc-----cCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCC-CCCCCCCCcEEEe
Q 012785 220 G------DAKRFN-----KDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYT-SITYPADHDLMLF 282 (456)
Q Consensus 220 ~------d~~~l~-----~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~-~~~~~~~~~i~i~ 282 (456)
. |.+.++ ..+++++++++|+||||.+.+ ++|+++|+++|+||+|....+. ++ ...+.+++++
T Consensus 126 ~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~-~~~~~di~~~ 204 (386)
T 2dr1_A 126 YEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKF-DKWGLDVVFS 204 (386)
T ss_dssp CCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCT-TTTTCSEEEE
T ss_pred cCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCccccc-cccCCcEEEE
Confidence 5 344443 236789999999999999977 4899999999999999854331 22 2346799999
Q ss_pred cCccccCCCCceEEEEEEeCHHHHHHHH----------------HH--HhhccCcCChHHHHHHHHHHHhhhCCCCCCCC
Q 012785 283 TVSKSTGHAGTRIGWALVKDMEVAKKMT----------------KY--IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGS 344 (456)
Q Consensus 283 S~SK~~g~~G~RiG~l~~~~~~~~~~l~----------------~~--~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~ 344 (456)
|+||.++.++ ++||++++ +++++.+. .. ....+.+.+.+.|.++.++|+.+
T Consensus 205 s~sK~~~~~~-g~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--------- 273 (386)
T 2dr1_A 205 SSQKAFGVPP-GLAIGAFS-ERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRII--------- 273 (386)
T ss_dssp ETTSTTCCCS-SCEEEEEC-HHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHH---------
T ss_pred eccccccCCC-ceEEEEEC-HHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHH---------
Confidence 9999998652 49999997 88887763 22 12345678889999998888742
Q ss_pred cchh--HHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEe
Q 012785 345 EDEC--FFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILT 420 (456)
Q Consensus 345 ~~~~--~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v 420 (456)
++ .+++.+++++++++.+.+.|+++ ++.+..+.+. ..++++|+.++. +.+.+.+.|.++||.+
T Consensus 274 --~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v 340 (386)
T 2dr1_A 274 --EKMGGKEKWLEMYEKRAKMVREGVREI-GLDILAEPGH----------ESPTITAVLTPPGIKGDEVYEAMRKRGFEL 340 (386)
T ss_dssp --HHTTCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCTTC----------BCSSEEEEECCTTCCHHHHHHHHHHTTEEC
T ss_pred --HHhcCHHHHHHHHHHHHHHHHHHHHHc-CCeeCcCccc----------cCCceEEEEcCCCCCHHHHHHHHHHCCeEE
Confidence 22 36788999999999999999987 4555544321 123478888863 5667778888889999
Q ss_pred ecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 421 RSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 421 ~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
+||..|. .++++||++. .+++++++++++|++++
T Consensus 341 ~~~~~~~-~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 376 (386)
T 2dr1_A 341 AKGYGSV-KEKTFRIGHMGYMKFEDIQEMLDNLREVI 376 (386)
T ss_dssp EECCGGG-TTTEEEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred ecCcccc-CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 9998664 3679999998 38999999999999875
No 88
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.97 E-value=1.5e-30 Score=262.19 Aligned_cols=324 Identities=15% Similarity=0.142 Sum_probs=231.3
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCc---c-ccccccC--CCCcccCCCHHHHHHHHHHHHHhcCccCCCceEE
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGW---Q-SLSYFSD--VRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIV 167 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~---~-~~~~y~~--~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~ 167 (456)
+++|+|+.|.|. +.++.+.++.. ..+.... + ....|++ ..+ ..+++++++++++.. ++++|+
T Consensus 27 ~~~i~l~~~~~~-~~~~~v~~a~~-~~~~~~~~~~~~~~~~y~~~~~~~-----~~~l~~~la~~~~~~-----~~~~v~ 94 (420)
T 1t3i_A 27 HPLVYLDNAATS-QKPRAVLEKLM-HYYENDNANVHRGAHQLSVRATDA-----YEAVRNKVAKFINAR-----SPREIV 94 (420)
T ss_dssp EECEECBTTTCC-CCCHHHHHHHH-HHHHHTCCCC--CCSHHHHHHHHH-----HHHHHHHHHHHTTCS-----CGGGEE
T ss_pred CceEEecCCccC-CCCHHHHHHHH-HHHHhccCCCCcccchHHHHHHHH-----HHHHHHHHHHHcCCC-----CCCeEE
Confidence 457999999998 44444443322 1121110 1 1123543 244 488999999998631 247899
Q ss_pred EccCHHHHHHHHHHHh----cCCCCCCCcEEEEeCCCCCC----hhhhhhhcCCeEeeeccC------cccccc---CCC
Q 012785 168 VGTGSTQLFQAALYAL----SSQDASEPISVVSAAPYYSS----YPSITDCVKSRLYKWAGD------AKRFNK---DGP 230 (456)
Q Consensus 168 ~t~G~~~al~~~~~~l----~~~gd~~~~~Vlv~~P~y~~----~~~~~~~~g~~~~~~~~d------~~~l~~---~~~ 230 (456)
+|+|+++++.+++.++ .++|| +|++++|+|+. +...++..|.+++.++.| .+.++. .++
T Consensus 95 ~~~g~t~a~~~~~~~~~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~ 170 (420)
T 1t3i_A 95 YTRNATEAINLVAYSWGMNNLKAGD----EIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKT 170 (420)
T ss_dssp EESSHHHHHHHHHHHTHHHHCCTTC----EEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCTTE
T ss_pred EcCChHHHHHHHHHHhhhcccCCCC----EEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCCCc
Confidence 9999999999999999 88999 99999999998 556677889998877654 333432 367
Q ss_pred eEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHH
Q 012785 231 YIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDME 304 (456)
Q Consensus 231 ~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~ 304 (456)
++|++++|+||||.+++ ++|+++|+++|+|++|...... +. ...+.+++++|+||.+|.+| +||++++ ++
T Consensus 171 ~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~-~~~~~~~~di~~~s~sK~~~~~g--~G~~~~~-~~ 246 (420)
T 1t3i_A 171 KLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYP-LDVQLIDCDWLVASGHKMCAPTG--IGFLYGK-EE 246 (420)
T ss_dssp EEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSC-CCHHHHTCSEEEEEGGGTTSCTT--CEEEEEC-HH
T ss_pred eEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCcc-CchhhcCCCEEEEehhhhcCCCc--eEEEEEc-hH
Confidence 89999999999999987 4899999999999999853321 11 12257899999999999778 9999996 88
Q ss_pred HHHHHHHHHhh--------------------ccCcCChHHHHHHHH-HHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 012785 305 VAKKMTKYIEL--------------------NTIGVSKDSQLRAAK-VLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQ 363 (456)
Q Consensus 305 ~~~~l~~~~~~--------------------~~~~~s~~~q~~a~~-~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 363 (456)
+++++...... ...+.+.+.|.++.. .++.+. +..+++.+++++++++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~----------~~~~~~~~~~~~~~~~~ 316 (420)
T 1t3i_A 247 ILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLT----------DLGMENIHNYEVELTHY 316 (420)
T ss_dssp HHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH----------HHCHHHHHHHHHHHHHH
T ss_pred HHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHH----------HhHHHHHHHHHHHHHHH
Confidence 88877654321 124577778877654 455321 22467788899999999
Q ss_pred HHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCC------C-CCeEEE
Q 012785 364 LRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGF------S-PKYVRI 435 (456)
Q Consensus 364 l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~------~-~~~iRi 435 (456)
+.+.|++++++.+..+.... ...++|+++.++. +.+.+.+.|.++||.++||..|.. + ++++||
T Consensus 317 l~~~L~~~~g~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRi 388 (420)
T 1t3i_A 317 LWQGLGQIPQLRLYGPNPKH--------GDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARA 388 (420)
T ss_dssp HHHHHHTCTTEEEESCCGGG--------SCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEE
T ss_pred HHHHHHhCCCeEEeCCCccc--------cccCCEEEEEECCCCHHHHHHHHHHCCeEEeeccccchHHHHhcCCCCeEEE
Confidence 99999987556655443100 0012255556754 456778889999999999965521 2 689999
Q ss_pred EecC--ChhHHHHHHHHHHhhh
Q 012785 436 SMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 436 s~~~--~~e~i~~~l~~L~~~l 455 (456)
++.. +++++++++++|++++
T Consensus 389 s~~~~~~~~~i~~~~~~l~~~~ 410 (420)
T 1t3i_A 389 SLYFYNTKEEIDLFLQSLQATI 410 (420)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHHHH
Confidence 9985 8899999999998875
No 89
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.97 E-value=1.4e-29 Score=252.62 Aligned_cols=316 Identities=13% Similarity=0.100 Sum_probs=230.0
Q ss_pred CCCCeEEecCCCC-CCCchhHhhhccccccccc-Cc-cccccc--cCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceE
Q 012785 92 GGERIINVDHGDP-TMYEKYWQKVGDKTTIVIP-GW-QSLSYF--SDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHI 166 (456)
Q Consensus 92 ~~~~~i~l~~g~p-~~~~~~~~~~~~~~~~~~~-~~-~~~~~y--~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I 166 (456)
.+..+|||+.|++ .+.+++.+.+... ..+.. +. .....| ....+ ..+|+++++++++. ++.|
T Consensus 37 ~g~~~id~~~~~~~~~~~~~~v~~a~~-~~~~~~~~~~~~~~~~~g~~~~-----~~~l~~~la~~~g~-------~~~i 103 (384)
T 1bs0_A 37 DDRQYLNFSSNDYLGLSHHPQIIRAWQ-QGAEQFGIGSGGSGHVSGYSVV-----HQALEEELAEWLGY-------SRAL 103 (384)
T ss_dssp TTEEEEECSCCCTTSGGGCHHHHHHHH-HHHHHHCSCCCSBTTTTCCCHH-----HHHHHHHHHHHHTC-------SEEE
T ss_pred CCceEEEeeccCccCCCCCHHHHHHHH-HHHHHhCCCCCCcCcccCChHH-----HHHHHHHHHHHhCC-------CcEE
Confidence 3557899999985 4333443433221 11211 11 001123 23334 48999999999853 3567
Q ss_pred EEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-Ccccccc----C--CCeEEEEcCCC
Q 012785 167 VVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-DAKRFNK----D--GPYIELVTSPN 239 (456)
Q Consensus 167 ~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d~~~l~~----~--~~~~i~v~~P~ 239 (456)
++++| ++++..+++++.++|| .|+++.|+|+.+...++..|.+++.++. |.+.++. . +++++++++||
T Consensus 104 ~~~sG-t~a~~~~~~~~~~~gd----~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~~~ 178 (384)
T 1bs0_A 104 LFISG-FAANQAVIAAMMAKED----RIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVF 178 (384)
T ss_dssp EESCH-HHHHHHHHHHHCCTTC----EEEEETTCCHHHHHHHHTSSSEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBC
T ss_pred EeCCc-HHHHHHHHHHhCCCCc----EEEEcccccHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 77777 7999999999999999 9999999999999999999999988774 4454432 2 36889999999
Q ss_pred CCCcccch-----HHhhhcCcEEEeeecCCCCCC----CCCC--CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHH
Q 012785 240 NPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY----TSIT--YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKK 308 (456)
Q Consensus 240 NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~----~~~~--~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~ 308 (456)
||||.+++ ++|+++|+++|+||+|....+ .++. ...+.+++++||||.+|++| ||++++ +++++.
T Consensus 179 nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~~~~-~~~~~~ 254 (384)
T 1bs0_A 179 SMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSG---AAVLCS-STVADY 254 (384)
T ss_dssp TTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSCC---EEEEEC-HHHHHH
T ss_pred CCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhhccC---cEEEeC-HHHHHH
Confidence 99999987 389999999999999975322 1111 11235699999999999777 999996 999998
Q ss_pred HHHHHh--hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccc
Q 012785 309 MTKYIE--LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTF 386 (456)
Q Consensus 309 l~~~~~--~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~ 386 (456)
+..... ..+.+.+++.|.++.+.|+.+.+ .+.++.+++++++++.+.+.|++++ +.+.++
T Consensus 255 l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~----------~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~------- 316 (384)
T 1bs0_A 255 LLQFARHLIYSTSMPPAQAQALRASLAVIRS----------DEGDARREKLAALITRFRAGVQDLP-FTLADS------- 316 (384)
T ss_dssp HHHHCHHHHSSBCCCHHHHHHHHHHHHHHHS----------HHHHHHHHHHHHHHHHHHHHHTTSS-CEECSC-------
T ss_pred HHHhchhhhcCCCCCHHHHHHHHHHHHHHhc----------cccHHHHHHHHHHHHHHHHHHHhcC-CcccCC-------
Confidence 877532 22346889999888888874211 1567788999999999999998874 444322
Q ss_pred ccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCC--CCCeEEEEecC--ChhHHHHHHHHHHhh
Q 012785 387 LGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGF--SPKYVRISMLD--RDENYNLFVQRLSKI 454 (456)
Q Consensus 387 ~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~--~~~~iRis~~~--~~e~i~~~l~~L~~~ 454 (456)
.++|+|+.++. +...+.+.|.++||.++||..|+. ..+++||+++. +++++++++++|+++
T Consensus 317 -------~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 317 -------CSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp -------CSSBCCEEEESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred -------CCCEEEEEeCCHHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 22367777753 456677888888999999998863 35799999975 899999999999875
No 90
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.97 E-value=6.1e-30 Score=254.48 Aligned_cols=277 Identities=13% Similarity=0.158 Sum_probs=207.0
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc----CCCCCCCcEEEEeCCCCCChhhhh---hhcCCe
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS----SQDASEPISVVSAAPYYSSYPSIT---DCVKSR 214 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~----~~gd~~~~~Vlv~~P~y~~~~~~~---~~~g~~ 214 (456)
..+|+++++++++. ++++|++|+|+++++.+++.++. ++|| +|++++|+|+.+...+ +..|.+
T Consensus 46 ~~~l~~~la~~~g~------~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~~g~~ 115 (384)
T 1eg5_A 46 MEKAREKVAKVLGV------SPSEIFFTSCATESINWILKTVAETFEKRKR----TIITTPIEHKAVLETMKYLSMKGFK 115 (384)
T ss_dssp HHHHHHHHHHHHTS------CGGGEEEESCHHHHHHHHHHHHHHHTTTTCC----EEEECTTSCHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHcCC------CCCeEEEECCHHHHHHHHHHhhhhhccCCCC----EEEECCCCchHHHHHHHHHHhcCCE
Confidence 48899999999863 45789999999999999999998 7899 9999999999886665 667999
Q ss_pred EeeeccC------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcC--cEEEeeecCCCCCC-CCCCCCCCC
Q 012785 215 LYKWAGD------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSG--GILVHDLAYYWPQY-TSITYPADH 277 (456)
Q Consensus 215 ~~~~~~d------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~--~~iI~De~y~~~~~-~~~~~~~~~ 277 (456)
++.++.| .+.++. .+++++++++|+||||.+++ ++|+++| +++|+||+|..... ..+ ...+.
T Consensus 116 ~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~~-~~~~~ 194 (384)
T 1eg5_A 116 VKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSL-EKLEV 194 (384)
T ss_dssp EEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCC-TTTCC
T ss_pred EEEEccCCCCccCHHHHHHHhCCCCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCcccCc-hhcCC
Confidence 8877654 344432 36789999999999999988 4899999 99999999873211 112 22357
Q ss_pred cEEEecCccccCCCCceEEEEEEeCHHH--HHHHHHH---HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHH
Q 012785 278 DLMLFTVSKSTGHAGTRIGWALVKDMEV--AKKMTKY---IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEF 352 (456)
Q Consensus 278 ~i~i~S~SK~~g~~G~RiG~l~~~~~~~--~~~l~~~---~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~ 352 (456)
+++++|+||.+|++| +||++++ +++ ...+... ....+.+.+.+.|.++.++|+.. .+++++
T Consensus 195 di~~~s~sK~~g~~G--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-----------~~~~~~ 260 (384)
T 1eg5_A 195 DYASFSAHKFHGPKG--VGITYIR-KGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIA-----------VEELSE 260 (384)
T ss_dssp SEEEEEGGGGTSCTT--CEEEEEC-TTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHH-----------HHTHHH
T ss_pred CEEEecHHHhcCCCc--eEEEEEc-CCCccccccccCcccccccCCCCChHHHHHHHHHHHHH-----------HHhHHH
Confidence 899999999999888 7999997 554 2222111 11245678999999988888731 356788
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCC-CcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCCC-
Q 012785 353 TNHQMSTRWKQLRMAVQKSGLFSVPELP-SQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGFS- 429 (456)
Q Consensus 353 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~-g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~~- 429 (456)
.+++++++++.+.+.|++. ++.+..+. +.+ +.++++.+++ +.+.+.+.|.++||.+++|..|+..
T Consensus 261 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~ 328 (384)
T 1eg5_A 261 AAKHMEKLRSKLVSGLMNL-GAHIITPLEISL-----------PNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACTSKD 328 (384)
T ss_dssp HHHHHHHHHHHHHHHHHTT-TCEECSCTTSBC-----------TTEEEEECTTCCHHHHHHHHHHTTEECBC--------
T ss_pred HHHHHHHHHHHHHHHhCCC-CeEEeCCcccCC-----------CCEEEEEeCCCCHHHHHHHHhhCCeEEeccccccCCC
Confidence 9999999999999999884 45554432 211 1256666653 5667788889999999999887531
Q ss_pred -----------------CCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 430 -----------------PKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 430 -----------------~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
.+++||+++ .+++++++++++|++++
T Consensus 329 ~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 373 (384)
T 1eg5_A 329 ERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEIL 373 (384)
T ss_dssp ----CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 479999998 48999999999999875
No 91
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.97 E-value=7.8e-30 Score=255.66 Aligned_cols=318 Identities=14% Similarity=0.108 Sum_probs=228.8
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCc---cc---cccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEE
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGW---QS---LSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIV 167 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~---~~---~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~ 167 (456)
++++.|+.+.+... ++.+.++.. ..+.... +. ...|.+..+ ..+++++++++++.. ++++|+
T Consensus 22 ~~~i~l~~~~~~~~-~~~v~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~la~~~~~~-----~~~~v~ 89 (406)
T 1kmj_A 22 LPLAYLDSAASAQK-PSQVIDAEA-EFYRHGYAAVHRGIHTLSAQATEK-----MENVRKRASLFINAR-----SAEELV 89 (406)
T ss_dssp EECEECCTTTCCCC-CHHHHHHHH-HHHHHTCCCCSSCSSHHHHHHHHH-----HHHHHHHHHHHTTCS-----CGGGEE
T ss_pred CceEEecCCccCCC-CHHHHHHHH-HHHHhhcCCCCCCcchHHHHHHHH-----HHHHHHHHHHHcCCC-----CCCeEE
Confidence 46799999988743 333433221 1122111 10 001223344 488999999998531 247899
Q ss_pred EccCHHHHHHHHHHHh----cCCCCCCCcEEEEeCCCCCChh----hhhhhcCCeEeeeccC------cccccc---CCC
Q 012785 168 VGTGSTQLFQAALYAL----SSQDASEPISVVSAAPYYSSYP----SITDCVKSRLYKWAGD------AKRFNK---DGP 230 (456)
Q Consensus 168 ~t~G~~~al~~~~~~l----~~~gd~~~~~Vlv~~P~y~~~~----~~~~~~g~~~~~~~~d------~~~l~~---~~~ 230 (456)
+|+|+++++.+++.++ .++|| +|++++|+|+... ..++..|.+++.++.+ .+.++. .++
T Consensus 90 ~~~g~t~a~~~~~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~ 165 (406)
T 1kmj_A 90 FVRGTTEGINLVANSWGNSNVRAGD----NIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKT 165 (406)
T ss_dssp EESSHHHHHHHHHHHTHHHHCCTTC----EEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCTTE
T ss_pred EeCChhHHHHHHHHHhhhhcCCCCC----EEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhccCC
Confidence 9999999999999999 88999 9999999987643 3466779988877653 444432 367
Q ss_pred eEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHH
Q 012785 231 YIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDME 304 (456)
Q Consensus 231 ~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~ 304 (456)
++|++++|+||||.+++ ++|+++|+++|+||+|..... ++. ...+.+++++|+||.+|.+| +||++++ ++
T Consensus 166 ~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~-~~~~~~~~~d~~~~s~~K~~g~~G--~G~~~~~-~~ 241 (406)
T 1kmj_A 166 RLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHH-PVDVQALDCDFYVFSGHKLYGPTG--IGILYVK-EA 241 (406)
T ss_dssp EEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTS-CCCHHHHTCSEEEEEGGGTTSCTT--CEEEEEC-HH
T ss_pred eEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCC-CCcccccCCCEEEEEchhccCCCC--cEEEEEe-HH
Confidence 89999999999999987 489999999999999986322 221 11257899999999999888 8999996 88
Q ss_pred HHHHHHHHHh---------------------hccCcCChHHHHHHH-HHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHH
Q 012785 305 VAKKMTKYIE---------------------LNTIGVSKDSQLRAA-KVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWK 362 (456)
Q Consensus 305 ~~~~l~~~~~---------------------~~~~~~s~~~q~~a~-~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 362 (456)
+++++..... ....+.+.+.|.++. +.++.+. +..+++.+++++++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~----------~~~~~~~~~~~~~~~~ 311 (406)
T 1kmj_A 242 LLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVS----------ALGLNNIAEYEQNLMH 311 (406)
T ss_dssp HHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH----------HHCHHHHHHHHHHHHH
T ss_pred HHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHH----------HcCHHHHHHHHHHHHH
Confidence 8887754431 122456777777665 5555321 2356778889999999
Q ss_pred HHHHHHHhcCCccccCC--CCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCC-------CCCe
Q 012785 363 QLRMAVQKSGLFSVPEL--PSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGF-------SPKY 432 (456)
Q Consensus 363 ~l~~~L~~~~~~~~~~~--~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~-------~~~~ 432 (456)
.+.+.|++++++.+..+ .|+ |+++.+++ +.+.+.+.|.++||.++||..|.. .+++
T Consensus 312 ~l~~~L~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~ 377 (406)
T 1kmj_A 312 YALSQLESVPDLTLYGPQNRLG--------------VIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAM 377 (406)
T ss_dssp HHHHHHTTSTTEEEESCTTCCS--------------EEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCE
T ss_pred HHHHHHhcCCCeEEecCCCcCC--------------EEEEEECCCCHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCe
Confidence 99999998755665555 444 44445653 456677889999999999986421 2689
Q ss_pred EEEEecC--ChhHHHHHHHHHHhhh
Q 012785 433 VRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 433 iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+||++.. +++++++++++|++++
T Consensus 378 iRis~~~~~t~~~i~~~~~~l~~~~ 402 (406)
T 1kmj_A 378 CRASLAMYNTHEEVDRLVTGLQRIH 402 (406)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEeecCCCHHHHHHHHHHHHHHH
Confidence 9999975 8999999999998875
No 92
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.97 E-value=1.8e-28 Score=241.04 Aligned_cols=275 Identities=12% Similarity=0.020 Sum_probs=207.9
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh--hhhhhcCCeEeeec
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP--SITDCVKSRLYKWA 219 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~--~~~~~~g~~~~~~~ 219 (456)
..+++++++++++. ++++|++|+|+++++.++++++.++|| +|++++|+|+.+. ..++..|.+++.++
T Consensus 36 ~~~l~~~la~~~g~------~~~~i~~~~g~t~a~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~g~~~~~v~ 105 (352)
T 1iug_A 36 FLKARGLLREAFRT------EGEVLILTGSGTLAMEALVKNLFAPGE----RVLVPVYGKFSERFYEIALEAGLVVERLD 105 (352)
T ss_dssp HHHHHHHHHHHHTC------SSEEEEEESCHHHHHHHHHHHHCCTTC----EEEEEECSHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHhCC------CCceEEEcCchHHHHHHHHHhccCCCC----eEEEEeCCchhHHHHHHHHHcCCceEEEe
Confidence 37899999999864 357999999999999999999999999 9999999999875 44556799988776
Q ss_pred cC------ccccccCCCeEEEEcCCCCCCcccch-----HHhhhc--CcEEEeeecCCCCCCCCCC-CCCCCcEEEecCc
Q 012785 220 GD------AKRFNKDGPYIELVTSPNNPDGSVRQ-----SVVNRS--GGILVHDLAYYWPQYTSIT-YPADHDLMLFTVS 285 (456)
Q Consensus 220 ~d------~~~l~~~~~~~i~v~~P~NPtG~~~~-----~l~~~~--~~~iI~De~y~~~~~~~~~-~~~~~~i~i~S~S 285 (456)
.| .+.++..+++++++++||||||.+++ ++|+++ |+++|+||+|.... .++. ...+.+++++|+|
T Consensus 106 ~~~~~~~d~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~-~~~~~~~~~~d~~~~s~~ 184 (352)
T 1iug_A 106 YPYGDTPRPEDVAKEGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLV-GEVALEAMGVDAAASGSQ 184 (352)
T ss_dssp CCTTCCCCTTTSCCSSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTT-BCCCSGGGTCSEEEEESS
T ss_pred CCCCCCCCHHHHhccCCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccC-cceeccccCeeEEEecCc
Confidence 53 44444446789999999999999987 488999 99999999997321 2221 1224689999999
Q ss_pred cc-cCCCCceEEEEEEeCHHHHHH---------HHH----H-HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHH
Q 012785 286 KS-TGHAGTRIGWALVKDMEVAKK---------MTK----Y-IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFF 350 (456)
Q Consensus 286 K~-~g~~G~RiG~l~~~~~~~~~~---------l~~----~-~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l 350 (456)
|. +|.+| +||++++ ++++++ +.. . ......+.+...+.++.++++.+ ++++
T Consensus 185 K~~~~~~g--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-----------~~~~ 250 (352)
T 1iug_A 185 KGLMCPPG--LGFVALS-PRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEV-----------LPRL 250 (352)
T ss_dssp STTCCCSC--EEEEEEC-HHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH-----------GGGH
T ss_pred ccccCCCc--eeEEEEC-HHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHH-----------HHHH
Confidence 94 44444 8999996 776654 221 1 12234556777777777777732 2347
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCC
Q 012785 351 EFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGF 428 (456)
Q Consensus 351 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~ 428 (456)
++.+++++++++.+.+.|+++ ++.+..+. ..++++|++++. +.+.+.+.|.++||.+++|..+.
T Consensus 251 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~- 316 (352)
T 1iug_A 251 EEHLALKAWQNALLYGVGEEG-GLRPVPKR------------FSPAVAAFYLPEGVPYARVKEAFAQRGAVIAGGQGPL- 316 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCEESCSS------------BCTTCEEEECCTTCCHHHHHHHHHTTTEECEECCGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCcccccc------------cCCeEEEEEcCCCCCHHHHHHHHHHCCEEEEeCCCcc-
Confidence 888999999999999999987 45554432 022378888863 56678888888999999988432
Q ss_pred CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 429 SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 429 ~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
.++++||++.. +++++++++++|++++
T Consensus 317 ~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 345 (352)
T 1iug_A 317 KGKVFRLSLMGAYDRYEALGVAGMFREVL 345 (352)
T ss_dssp TTTEEEECCCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHHHHH
Confidence 46899999974 7899999999998875
No 93
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.96 E-value=1.4e-29 Score=252.56 Aligned_cols=277 Identities=12% Similarity=0.071 Sum_probs=208.6
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhh----hhhcCCeEe
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSI----TDCVKSRLY 216 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~----~~~~g~~~~ 216 (456)
..+++++++++++. ++++|++|+|+++++.++++++ .++|| +|++++|+|+.+... ++..|.+++
T Consensus 61 ~~~l~~~la~~~g~------~~~~v~~~~g~t~a~~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~~~g~~~~ 130 (390)
T 1elu_A 61 IAQLRQALAETFNV------DPNTITITDNVTTGCDIVLWGLDWHQGD----EILLTDCEHPGIIAIVQAIAARFGITYR 130 (390)
T ss_dssp HHHHHHHHHHHTTS------CGGGEEEESSHHHHHHHHHHHSCCCTTC----EEEEETTCCHHHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHHcCC------CHHHEEEeCChHHHHHHHHhCCCCCCCC----EEEEecCcccHHHHHHHHHHHHhCcEEE
Confidence 48999999999853 4568999999999999999999 78999 999999999997654 466799988
Q ss_pred eeccC--------cccccc---CCCeEEEEcCCCCCCcccch-----HHhh----hcCcEEEeeecCCCCCCCCCC-CCC
Q 012785 217 KWAGD--------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVN----RSGGILVHDLAYYWPQYTSIT-YPA 275 (456)
Q Consensus 217 ~~~~d--------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~----~~~~~iI~De~y~~~~~~~~~-~~~ 275 (456)
.++.+ .+.++. .++++|++++||||||.+++ ++|+ ++|+++|+||+|.... .++. ...
T Consensus 131 ~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~-~~~~~~~~ 209 (390)
T 1elu_A 131 FFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGS-LPLDFSRL 209 (390)
T ss_dssp EECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTT-BCCCTTTS
T ss_pred EEcCCCCCCccchHHHHHHhcCCCceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCC-cCCChhhc
Confidence 77754 233433 35789999999999999987 4889 9999999999998422 2221 234
Q ss_pred CCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHH----------------------HhhccCcCChHHHHHHHHHHH
Q 012785 276 DHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKY----------------------IELNTIGVSKDSQLRAAKVLK 333 (456)
Q Consensus 276 ~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~----------------------~~~~~~~~s~~~q~~a~~~L~ 333 (456)
+.+++++|+||.++ +|.++||++++ +++++.+... ......+.+.+.+.++.++++
T Consensus 210 ~~d~~~~s~~K~~~-~~~g~G~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~ 287 (390)
T 1elu_A 210 EVDYYAFTGHKWFA-GPAGVGGLYIH-GDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQ 287 (390)
T ss_dssp CCSEEEEESSSTTC-CCTTCEEEEEC-TTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHH
T ss_pred CCCEEEcccccccc-CCCceEEEEEC-HHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHH
Confidence 57899999999443 56679999997 7777766532 122234566777777767676
Q ss_pred hhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHH
Q 012785 334 VVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCES 411 (456)
Q Consensus 334 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~ 411 (456)
.+.+ ..++++.+++++++++.+.+.|++++++.+..|. ++.++|++++++. +.+.+.+
T Consensus 288 ~l~~---------~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 347 (390)
T 1elu_A 288 LHQR---------QGTAEERYQAICQRSEFLWRGLNQLPHVHCLATS-----------APQAGLVSFTVDSPLGHRAIVQ 347 (390)
T ss_dssp HHHH---------HCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSS-----------CCSSSEEEEEECSSSCHHHHHH
T ss_pred HHHH---------cCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCc-----------cccccEEEEEcCCCCCHHHHHH
Confidence 4322 2357888999999999999999987555554321 1223355557742 5667778
Q ss_pred HHHhCCEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 412 FLKGNKILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 412 ~l~~~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
.|.++||.+++|. .++++||++. .+++++++++++|+++.
T Consensus 348 ~l~~~gi~v~~~~----~~~~iRis~~~~~~~~~i~~~~~~l~~~~ 389 (390)
T 1elu_A 348 KLEEQRIYLRTIA----DPDCIRACCHYITDEEEINHLLARLADFG 389 (390)
T ss_dssp HHHHTTEECEEET----TTTEEEEECCTTCCHHHHHHHHHHHTTCC
T ss_pred HHHHCCEEEEecC----CCCeEEEecccCCCHHHHHHHHHHHHhhC
Confidence 8889999999976 3689999985 48999999999998753
No 94
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.96 E-value=7.3e-31 Score=260.23 Aligned_cols=314 Identities=13% Similarity=0.061 Sum_probs=220.1
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCc------cccccccCCCCcccCCCHHHHHH-HHHHHHHhcCccCCCce
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGW------QSLSYFSDVRNLCWFLEPEFAKE-VVRLHKVVGNAITENHH 165 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~------~~~~~y~~~~G~~~~~~~~lr~a-ia~~~~~~g~~~~~~~~ 165 (456)
+++++.|+.|.+..+.++.+.++... .+.... .....|.+..+ ..+++++ ++++++. + +
T Consensus 6 ~~~~i~ld~~~~~~~~~~~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~la~~~~~-------~-~ 71 (371)
T 2e7j_A 6 TKDFINIDPLQTGGKLTEEARQALLE-WGDGYSVCDFCTTGRLDEIKTPP-----IHDFIHNQLPKFLGC-------D-V 71 (371)
T ss_dssp --CCEECCHHHHTCCCCHHHHHHHHH-C--------------------CC-----HHHHHHTHHHHHTTS-------S-E
T ss_pred CCCcEEecccccCCCCCHHHHHHHHH-HHhhcccCCccccccchhhHHHH-----HHHHHHHHHHHHcCC-------C-E
Confidence 34678888866555545444433221 111110 00112333445 5899999 9999864 3 8
Q ss_pred EEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeec--cC------cccccc--------CC
Q 012785 166 IVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWA--GD------AKRFNK--------DG 229 (456)
Q Consensus 166 I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~--~d------~~~l~~--------~~ 229 (456)
|++|+|+++++.+++++++++|| +|++++|+|+.+...++..|++++.++ .| .+.++. .+
T Consensus 72 v~~~~g~t~a~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~ 147 (371)
T 2e7j_A 72 ARVTNGAREAKFAVMHSLAKKDA----WVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGE 147 (371)
T ss_dssp EEEESSHHHHHHHHHHHHCCTTC----EEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSC
T ss_pred EEEeCChHHHHHHHHHHHhCCCC----EEEEccCcchHHHHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCC
Confidence 99999999999999999999999 999999999999999999999998877 54 333331 36
Q ss_pred CeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEecCccccCCCCceEEEEEEeCH
Q 012785 230 PYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDM 303 (456)
Q Consensus 230 ~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~ 303 (456)
++++++++||||||.+++ ++|+++|+++|+||+|...... .. ...+.+++++|+||.++ ++.|+||++++ +
T Consensus 148 ~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~~di~~~s~sK~~~-~~~~~G~~~~~-~ 224 (371)
T 2e7j_A 148 VVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMP-VSLKEIGADFIVGSGHKSMA-ASGPIGVMGMK-E 224 (371)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBC-CCHHHHTCSEEEEEHHHHSS-CCSSCEEEEEC-T
T ss_pred eEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCC-CChhhcCCCEEEecCCcCCC-CCCCcEEEEEe-c
Confidence 789999999999999987 3899999999999999864321 11 11245799999999998 44599999997 6
Q ss_pred HHHHH-HHHHHh--hc-----cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHH--HHHHHHHHHHHHhcCC
Q 012785 304 EVAKK-MTKYIE--LN-----TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQM--STRWKQLRMAVQKSGL 373 (456)
Q Consensus 304 ~~~~~-l~~~~~--~~-----~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~l~~~L~~~~~ 373 (456)
+++++ +..... .. ....+...+.++.+.++.+ ++ +.++++ +++++.+.+.|++. +
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-----------~~---~~~~~~~~~~~~~~l~~~L~~~-~ 289 (371)
T 2e7j_A 225 EWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHV-----------RE---RIKRWDEEVEKARRFAAEMEKL-G 289 (371)
T ss_dssp TTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHH-----------HH---HGGGHHHHHHHHHHHHHHHHHT-T
T ss_pred hhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHH-----------HH---HHHHHHHHHHHHHHHHHHHHHc-C
Confidence 77666 654432 11 3344555555555666521 11 456667 78888999999887 4
Q ss_pred ccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCC-----CCCCeEE-EEec---CChhHH
Q 012785 374 FSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFG-----FSPKYVR-ISML---DRDENY 444 (456)
Q Consensus 374 ~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg-----~~~~~iR-is~~---~~~e~i 444 (456)
+.+..+.. ..++++|++++ +.+.+.+.|.++||.+.| ..|+ ..++++| ++++ .+++++
T Consensus 290 ~~~~~~~~-----------~~~~~~~~~~~-~~~~~~~~l~~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~i 356 (371)
T 2e7j_A 290 IKQLGDNP-----------HNHDLMFFHAE-VLYEISKKAKGGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEEV 356 (371)
T ss_dssp CEEESSSS-----------CCSSEEEEECH-HHHHHHHHSSSGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHHH
T ss_pred cEEecCCC-----------ccCceEEEECC-CHHHHHHHHHHCCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHHH
Confidence 55544321 02337899887 666788888899999998 5442 2378999 9998 589999
Q ss_pred HHHHHHHHhhh
Q 012785 445 NLFVQRLSKIL 455 (456)
Q Consensus 445 ~~~l~~L~~~l 455 (456)
++++++|++++
T Consensus 357 ~~~~~~l~~~~ 367 (371)
T 2e7j_A 357 DYVLNAFKEII 367 (371)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 95
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.96 E-value=1.8e-28 Score=248.42 Aligned_cols=319 Identities=12% Similarity=0.069 Sum_probs=227.1
Q ss_pred CCCCeEEecCCCC-CCCchhHhhhccccccccc-CccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEc
Q 012785 92 GGERIINVDHGDP-TMYEKYWQKVGDKTTIVIP-GWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVG 169 (456)
Q Consensus 92 ~~~~~i~l~~g~p-~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t 169 (456)
.++.+|||+.|++ .+..++.+.+... ..+.. +. ....|....|. .....+|+++++++++. ++.++++
T Consensus 62 ~g~~~id~~~~~~lg~~~~~~v~~a~~-~~~~~~~~-~~~~~~~~~G~-~~~~~~l~~~la~~~g~-------~~~i~~~ 131 (427)
T 2w8t_A 62 RGKDTILLGTYNYMGMTFDPDVIAAGK-EALEKFGS-GTCGSRMLNGT-FHDHMEVEQALRDFYGT-------TGAIVFS 131 (427)
T ss_dssp TTEEEEECSCCCTTCGGGCHHHHHHHH-HHHHHHCS-CCCSCTTTTCC-CHHHHHHHHHHHHHHTC-------SEEEEES
T ss_pred CCceEEEEECcccccCCCCHHHHHHHH-HHHHHhCC-CCcccccccCC-cHHHHHHHHHHHHHhCC-------CceEEec
Confidence 4567899999986 3334444443322 11211 11 11112222330 00037888888888853 3455555
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-Ccccccc---C----CCeEEEEcCCCCC
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-DAKRFNK---D----GPYIELVTSPNNP 241 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d~~~l~~---~----~~~~i~v~~P~NP 241 (456)
+| ++++..++.++.++|| .|+++.|+|..+...++..|.+++.++. |.+.++. . ++++|++++|+||
T Consensus 132 sG-s~a~~~al~~l~~~gd----~vl~~~~~h~~~~~~~~~~g~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~~~n~ 206 (427)
T 2w8t_A 132 TG-YMANLGIISTLAGKGE----YVILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSM 206 (427)
T ss_dssp CH-HHHHHHHHHHHSCTTC----EEEEETTCCHHHHHHHHHSCSEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESEETT
T ss_pred Cc-HHHHHHHHHHhcCCCC----EEEECCcccHHHHHHHHHcCCeeEEeCCCCHHHHHHHHHhccCCCCeEEEEcCCCCC
Confidence 55 5689999999999999 9999999999999999999999988763 5555432 1 6789999999999
Q ss_pred Ccccch-----HHhhhcCcEEEeeecCCCCCCC----C----CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHH
Q 012785 242 DGSVRQ-----SVVNRSGGILVHDLAYYWPQYT----S----ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKK 308 (456)
Q Consensus 242 tG~~~~-----~l~~~~~~~iI~De~y~~~~~~----~----~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~ 308 (456)
||.+++ ++|+++|+++|+||+|.+..+. + ....++.+++++||||.+|++| ||++++ +++++.
T Consensus 207 tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g~~g---G~v~~~-~~l~~~ 282 (427)
T 2w8t_A 207 LGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVG---GFVVSN-HPKFEA 282 (427)
T ss_dssp TTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSCC---EEEEEC-CTTGGG
T ss_pred CCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhccCC---CEEEeC-HHHHHH
Confidence 999987 4899999999999999863322 1 1112356999999999999777 999996 788877
Q ss_pred HHHH-Hh-hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcccc-CCCCcccc
Q 012785 309 MTKY-IE-LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVP-ELPSQFCT 385 (456)
Q Consensus 309 l~~~-~~-~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~g~~~~ 385 (456)
+... .. ..+.+.++..+.++.+.|+.+. .+++.+++++++++.+.+.|++.+ +.+. .+.
T Consensus 283 l~~~~~~~~~~~~~~~~~~aa~~~al~~~~------------~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~----- 344 (427)
T 2w8t_A 283 VRLACRPYIFTASLPPSVVATATTSIRKLM------------TAHEKRERLWSNARALHGGLKAMG-FRLGTETC----- 344 (427)
T ss_dssp GGGTCHHHHSSCCCCHHHHHHHHHHHHHHT------------SCHHHHHHHHHHHHHHHHHHHHHT-CEESCSSC-----
T ss_pred HHHhcccccccCCCCHHHHHHHHHHHHHHh------------cCHHHHHHHHHHHHHHHHHHHHcC-CcccCCCC-----
Confidence 7654 22 2345677777777778887421 245678889999999999998873 4443 220
Q ss_pred cccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCC--CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 386 FLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGF--SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 386 ~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~--~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
.++++|+.+++ ....+.+.|.++||.+.|+..|+. +.+++||+++. +++++++++++|++++
T Consensus 345 --------~~~~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l 412 (427)
T 2w8t_A 345 --------DSAIVAVMLEDQEQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAG 412 (427)
T ss_dssp --------CSSEEEEEESSHHHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred --------CCCEEEEEECCHHHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 22378888864 356677888888999999988764 35799999985 8999999999999875
No 96
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.96 E-value=3.1e-28 Score=240.44 Aligned_cols=312 Identities=9% Similarity=0.065 Sum_probs=221.5
Q ss_pred eEEecCCCCCCCchhHhhhcccccccccCccccccccC-C-CCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 96 IINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSD-V-RNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 96 ~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-~-~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
+++|+.| |... ++.+.++.. +... ..|+. . .+ ..+++++++++++. ..+++++++|+|++
T Consensus 5 ~~~~~~g-p~~~-~~~v~~a~~-----~~~~--~~~~~~~~~~-----~~~l~~~la~~~g~----~~~~~~v~~~~g~t 66 (366)
T 1m32_A 5 YLLLTPG-PLTT-SRTVKEAML-----FDSC--TWDDDYNIGV-----VEQIRQQLTALATA----SEGYTSVLLQGSGS 66 (366)
T ss_dssp CEECSSS-SCCC-CHHHHHTTC-----CCCC--TTSHHHHTTT-----HHHHHHHHHHHHCS----SSSEEEEEEESCHH
T ss_pred cccccCC-CcCC-CHHHHHHHh-----hhhc--CCCHHHHHHH-----HHHHHHHHHHHhCC----CCcCcEEEEecChH
Confidence 5889888 6544 444444322 1111 12221 1 34 48999999999851 11235899999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeC-CCCCC-hhhhhhhcCCeEeeeccC------cccccc----C-CCeEEEEcCCCC
Q 012785 174 QLFQAALYALSSQDASEPISVVSAA-PYYSS-YPSITDCVKSRLYKWAGD------AKRFNK----D-GPYIELVTSPNN 240 (456)
Q Consensus 174 ~al~~~~~~l~~~gd~~~~~Vlv~~-P~y~~-~~~~~~~~g~~~~~~~~d------~~~l~~----~-~~~~i~v~~P~N 240 (456)
+++.++++++..+|| +|++.+ |+|+. +...++..|.+++.++.| .+.++. . +++++++++|+|
T Consensus 67 ~a~~~~~~~~~~~gd----~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~n 142 (366)
T 1m32_A 67 YAVEAVLGSALGPQD----KVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSET 142 (366)
T ss_dssp HHHHHHHHHSCCTTC----CEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEET
T ss_pred HHHHHHHHHhcCCCC----eEEEEeCCCccHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEEecccC
Confidence 999999999999998 887776 56654 566778889988876653 333432 2 468898999999
Q ss_pred CCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHH-
Q 012785 241 PDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI- 313 (456)
Q Consensus 241 PtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~- 313 (456)
|||.+++ ++|+++|+++|+||+|..... ++. ...+.+++++|+||.++ .+.++||++++ +++++++....
T Consensus 143 ptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~-~~~~~~~~~di~~~s~~K~~~-~~~g~G~~~~~-~~~~~~~~~~~~ 219 (366)
T 1m32_A 143 TTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGI-PMDIAALHIDYLISSANKCIQ-GVPGFAFVIAR-EQKLAACKGHSR 219 (366)
T ss_dssp TTTEECCHHHHHHHHHHHTCEEEEECTTTTTTS-CCCTTTTTCSEEEEESSSTTC-CCSSEEEEEEE-HHHHTTCTTCCS
T ss_pred CcceecCHHHHHHHHHHcCCEEEEECCccccCc-CccccccCccEEEecCccccc-CCCceEEEEEC-HHHHHhhcCCCC
Confidence 9999987 489999999999999985322 221 22357899999999774 23457999997 87776654310
Q ss_pred -----------------hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhH--HHHHHHHHHHHHHHHHHHHHhcCCc
Q 012785 314 -----------------ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECF--FEFTNHQMSTRWKQLRMAVQKSGLF 374 (456)
Q Consensus 314 -----------------~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~l~~~L~~~~~~ 374 (456)
....++.+...+.++.++++.+ .++ +++.+++++++++.+.+.|+++ ++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-----------~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~ 287 (366)
T 1m32_A 220 SLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKEL-----------AKEGGVAARHQRYQQNQRSLVAGMRAL-GF 287 (366)
T ss_dssp CSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH-----------HHHTHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred CccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHH-----------HHccCHhHHHHHHHHHHHHHHHHHHHC-CC
Confidence 0012567778888888877742 233 6778899999999999999987 34
Q ss_pred cccCCCCcccccccccCCCCCceEEeecCc----cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC--ChhHHHHHH
Q 012785 375 SVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD--RDENYNLFV 448 (456)
Q Consensus 375 ~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l 448 (456)
.+..+.+. ..+.++|+.++. +.+.+.+.|.++||.+++|..| .++++|++++. +++++++++
T Consensus 288 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~--~~~~iRi~~~~~~~~~~i~~~~ 355 (366)
T 1m32_A 288 NTLLDDEL----------HSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVS--QSDCFRIGNIGEVYAADITALL 355 (366)
T ss_dssp CBSSCGGG----------BCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCS--SSCEEEEECCSSCCHHHHHHHH
T ss_pred eeccCchh----------cCceEEEEEcCccCCCCHHHHHHHHHHCCEEEECCcCC--CCCEEEEecCCCCCHHHHHHHH
Confidence 44333100 112278888863 5677888888899999999877 37899999974 789999999
Q ss_pred HHHHhhhC
Q 012785 449 QRLSKILS 456 (456)
Q Consensus 449 ~~L~~~l~ 456 (456)
++|+++++
T Consensus 356 ~~l~~~~~ 363 (366)
T 1m32_A 356 TAIRTAMY 363 (366)
T ss_dssp HHHHHHCT
T ss_pred HHHHHHHH
Confidence 99998763
No 97
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.96 E-value=2.8e-28 Score=244.60 Aligned_cols=317 Identities=11% Similarity=0.051 Sum_probs=225.6
Q ss_pred CCCeEEecCCCC-CCCchhHhhhccccccccc-Cc--c-ccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEE
Q 012785 93 GERIINVDHGDP-TMYEKYWQKVGDKTTIVIP-GW--Q-SLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIV 167 (456)
Q Consensus 93 ~~~~i~l~~g~p-~~~~~~~~~~~~~~~~~~~-~~--~-~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~ 167 (456)
++.++++..++. .++.++.+.++.. ..+.. +. . ....|+...+ ..++|++++++++. +++|+
T Consensus 45 g~~~i~~~~~~~~~~~~~p~v~~a~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~la~~~~~-------~~~i~ 111 (401)
T 2bwn_A 45 KQDITVWCGNDYLGMGQHPVVLAAMH-EALEAVGAGSGGTRNISGTTAY-----HRRLEAEIAGLHQK-------EAALV 111 (401)
T ss_dssp EEEEEECSCSCTTSGGGCHHHHHHHH-HHHHHHCSCCCSBTTTBCCBHH-----HHHHHHHHHHHTTC-------SEEEE
T ss_pred CCcEEEeeCCCcccCCCCHHHHHHHH-HHHHHcCCCCCCcCcccCChHH-----HHHHHHHHHHHhCC-------CcEEE
Confidence 356788887765 3333333333221 11211 11 0 0112444444 48999999999863 47899
Q ss_pred EccCHHHHHHHHHHHhc--CCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC-cccccc-------CCCeEEEEcC
Q 012785 168 VGTGSTQLFQAALYALS--SQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD-AKRFNK-------DGPYIELVTS 237 (456)
Q Consensus 168 ~t~G~~~al~~~~~~l~--~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d-~~~l~~-------~~~~~i~v~~ 237 (456)
+|+|++ ++..++.++. .+|| +|+++.|+|+.+...++..|++++.++.| .+.++. .++++|++++
T Consensus 112 ~~sG~~-a~~~~~~~l~~~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~le~~l~~~~~~~~~~v~~~~ 186 (401)
T 2bwn_A 112 FSSAYN-ANDATLSTLRVLFPGL----IIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFES 186 (401)
T ss_dssp ESCHHH-HHHHHHHHHHHHSTTC----EEEEETTCCHHHHHHHHHSCCCEEEECTTCHHHHHHHHHHSCTTSCEEEEEES
T ss_pred ECCcHH-HHHHHHHHHhcCCCCC----EEEECchhhHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhhccCCceEEEEec
Confidence 999887 7777766653 5888 99999999999999999999999888764 333321 3678999999
Q ss_pred CCCCCcccch-----HHhhhcCcEEEeeecCCCCCC----CCCC---CC-CCCcEEEecCccccCCCCceEEEEEEeCHH
Q 012785 238 PNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY----TSIT---YP-ADHDLMLFTVSKSTGHAGTRIGWALVKDME 304 (456)
Q Consensus 238 P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~----~~~~---~~-~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~ 304 (456)
|+||||.+++ ++|+++|+++|+||+|....+ .++. .. .+.+++++||||.+|++| ||++++ ++
T Consensus 187 ~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G---G~~~~~-~~ 262 (401)
T 2bwn_A 187 VYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIAAS-AR 262 (401)
T ss_dssp BCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEEEC-HH
T ss_pred CcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC---CEEecC-HH
Confidence 9999999987 489999999999999983211 1111 11 134899999999999888 999996 88
Q ss_pred HHHHHHHHHhh--ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCc
Q 012785 305 VAKKMTKYIEL--NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQ 382 (456)
Q Consensus 305 ~~~~l~~~~~~--~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~ 382 (456)
+++.+...... ...+.+++.+.++.++++.+.. ..+++.+++++++++.+.+.|++. ++.+..+.+
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~----------~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~- 330 (401)
T 2bwn_A 263 MVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKT----------AEGQKLRDAQQMHAKVLKMRLKAL-GMPIIDHGS- 330 (401)
T ss_dssp HHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTS----------HHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSS-
T ss_pred HHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHh----------cccHHHHHHHHHHHHHHHHHHHHC-CCcccCCCC-
Confidence 98888764321 2344567888888888874321 234678888999999999999887 355444433
Q ss_pred ccccccccCCCCCceEEeecCc--cHHHHHHHH-HhCCEEeecCCCCCC--CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 383 FCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFL-KGNKILTRSGKHFGF--SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 383 ~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l-~~~gI~v~pg~~fg~--~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+++|+.++. +...+.+.| +++||.++|+..|+. +.+++|++++. +++++++++++|++++
T Consensus 331 -------------~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~ 397 (401)
T 2bwn_A 331 -------------HIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLW 397 (401)
T ss_dssp -------------SCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC
T ss_pred -------------CeEEEEeCChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHH
Confidence 268888864 445666666 489999999988764 33699999973 8999999999999876
Q ss_pred C
Q 012785 456 S 456 (456)
Q Consensus 456 ~ 456 (456)
+
T Consensus 398 ~ 398 (401)
T 2bwn_A 398 A 398 (401)
T ss_dssp -
T ss_pred H
Confidence 3
No 98
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.96 E-value=8.8e-28 Score=238.87 Aligned_cols=279 Identities=10% Similarity=0.079 Sum_probs=208.1
Q ss_pred CHHHHHHHHHHHHHhcCccCCC--ceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC--hhhhhhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITEN--HHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS--YPSITDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~--~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~--~~~~~~~~g~~~~~ 217 (456)
..+++++++++++. ++ ++|++|+|+++++. ++..++++|| +|++++|+|+. +...++..|.+++.
T Consensus 37 ~~~~~~~la~~~~~------~~~~~~v~~~~g~t~al~-~~~~~~~~gd----~vi~~~~~~~~~~~~~~~~~~g~~~~~ 105 (384)
T 3zrp_A 37 LAYSLKGLRYVMGA------SKNYQPLIIPGGGTSAME-SVTSLLKPND----KILVVSNGVFGDRWEQIFKRYPVNVKV 105 (384)
T ss_dssp HHHHHHHHHHHHTC------CTTSEEEEEESCHHHHHH-HGGGGCCTTC----EEEEECSSHHHHHHHHHHTTSSCEEEE
T ss_pred HHHHHHHHHHHhCC------CCCCcEEEEcCCcHHHHH-HHHhhcCCCC----EEEEecCCcchHHHHHHHHHcCCcEEE
Confidence 36788888888764 33 78999999999999 9999999999 99999999965 55667788999887
Q ss_pred eccC------cccccc----CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEe
Q 012785 218 WAGD------AKRFNK----DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLF 282 (456)
Q Consensus 218 ~~~d------~~~l~~----~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~ 282 (456)
++.| .+.++. .+++++++++||||||.+++ ++|+++|+++|+|++|.......-....+.+++++
T Consensus 106 v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~ 185 (384)
T 3zrp_A 106 LRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLT 185 (384)
T ss_dssp ECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEE
T ss_pred ecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccCccccccccCCCEEEe
Confidence 7754 344432 26899999999999999987 38999999999999998533221112345789999
Q ss_pred cCccccCCCCceEEEEEEeCHHHHHHH-------------HHHHh---------hccC-cCChHHHHHHHHHHHhhhCCC
Q 012785 283 TVSKSTGHAGTRIGWALVKDMEVAKKM-------------TKYIE---------LNTI-GVSKDSQLRAAKVLKVVSDSC 339 (456)
Q Consensus 283 S~SK~~g~~G~RiG~l~~~~~~~~~~l-------------~~~~~---------~~~~-~~s~~~q~~a~~~L~~~~~~~ 339 (456)
|+||.++ .+.++||++++ +++++++ ..... ...+ +.+...+.++.+.++.+.
T Consensus 186 s~~K~~~-~~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~--- 260 (384)
T 3zrp_A 186 ASQKALG-SAAGLGLLLLS-PKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIE--- 260 (384)
T ss_dssp ETTSTTC-CCSSEEEEEEC-HHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHH---
T ss_pred cCccccc-CCCceEEEEEC-HHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHH---
Confidence 9999885 33459999996 8887777 33321 1112 456666666666666321
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCE
Q 012785 340 KPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKI 418 (456)
Q Consensus 340 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI 418 (456)
+..+++.+++++++++.+.+.|+++ ++.+..+.+.. ..+.++|+.++. +.+.+.+.|.++||
T Consensus 261 -------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~gi 323 (384)
T 3zrp_A 261 -------KEGIENRIKRHTMVASAIRAGLEAL-GLEIVARRPES---------YSNTVTGVILKVADPQKVLAGTVNEGV 323 (384)
T ss_dssp -------HHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSCSSGGG---------BCSSEEEEECSSSCHHHHHHHHHTTTC
T ss_pred -------hcCHHHHHHHHHHHHHHHHHHHHHC-CCeEccCcccc---------cCccEEEEECCCCCHHHHHHHHHHCCE
Confidence 2337788999999999999999987 45555444110 112367888864 56778888888999
Q ss_pred EeecCCCCCCCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 419 LTRSGKHFGFSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 419 ~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
.+++|..+.. +++||++.. +++++++++++|++++
T Consensus 324 ~v~~g~~~~~--~~iRi~~~~~~~~e~i~~~~~~l~~~l 360 (384)
T 3zrp_A 324 EFAPGVHPAF--KYFRIGHMGWVTPNDAIIAISVIERTL 360 (384)
T ss_dssp CCEECCCTTC--CEEEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCc--CEEEEeccccCCHHHHHHHHHHHHHHH
Confidence 9999875433 899999863 8899999999999876
No 99
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.96 E-value=5.2e-29 Score=247.54 Aligned_cols=307 Identities=15% Similarity=0.081 Sum_probs=216.1
Q ss_pred CCCCeEEecCCCC--CCC-chhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 92 GGERIINVDHGDP--TMY-EKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~p--~~~-~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
.+...+||+.+.| .+. .++.+.+... ..+.........|+. .+ ..+|+++++++++. + ++|++
T Consensus 26 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~-~~~~~~~~~~~~y~~-~~-----~~~l~~~la~~~g~------~-~~v~~ 91 (375)
T 2eh6_A 26 EGKEYLDFVSGIGVNSLGHAYPKLTEALK-EQVEKLLHVSNLYEN-PW-----QEELAHKLVKHFWT------E-GKVFF 91 (375)
T ss_dssp TCCEEEESSHHHHTCTTCBSCHHHHHHHH-HHHHHCSCCCTTBCC-HH-----HHHHHHHHHHTSSS------C-EEEEE
T ss_pred CCCEEEEcCCcccccccCCCCHHHHHHHH-HHHHhccccCcccCC-HH-----HHHHHHHHHhhcCC------C-CeEEE
Confidence 4567899998865 333 3333333221 112111111224643 34 48999999998742 3 79999
Q ss_pred ccCHHHHHHHHHHH---hc---CCC-CCCCcEEEEeCCCCCChhhhhhhcCCe-------------Eeeec-cCcccccc
Q 012785 169 GTGSTQLFQAALYA---LS---SQD-ASEPISVVSAAPYYSSYPSITDCVKSR-------------LYKWA-GDAKRFNK 227 (456)
Q Consensus 169 t~G~~~al~~~~~~---l~---~~g-d~~~~~Vlv~~P~y~~~~~~~~~~g~~-------------~~~~~-~d~~~l~~ 227 (456)
|+|+++++.+++.+ +. ++| | +|++++|+|+.+...+...+.. +..++ .|.+.++.
T Consensus 92 ~~g~t~a~~~~~~~~~~~~~~~~~g~~----~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 167 (375)
T 2eh6_A 92 ANSGTESVEAAIKLARKYWRDKGKNKW----KFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVYK 167 (375)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTTCCCC----EEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTTCHHHHHT
T ss_pred eCchHHHHHHHHHHHHHHhccCCCCCC----EEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCCchHHHHHH
Confidence 99999999999875 34 677 8 9999999999988766554322 22222 36666654
Q ss_pred ---CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCC--CC-CCCC--CcEEEecCccccCC
Q 012785 228 ---DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTS--IT-YPAD--HDLMLFTVSKSTGH 290 (456)
Q Consensus 228 ---~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~--~~-~~~~--~~i~i~S~SK~~g~ 290 (456)
.+++++++++||||||.+++ ++|+++|+++|+||+|.+....+ .. ...+ .+++ ||||.++
T Consensus 168 ~l~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~--s~SK~~~- 244 (375)
T 2eh6_A 168 LLDEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVI--ALAKGLG- 244 (375)
T ss_dssp TCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGG-
T ss_pred HhcCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEE--EEccccc-
Confidence 36789999999999999854 27899999999999999643322 11 1111 2233 8899999
Q ss_pred CCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 012785 291 AGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK 370 (456)
Q Consensus 291 ~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~ 370 (456)
+|+|+||++++ +++++.+.......+++.+++.|.++.++|+. +++.+++++++++.+.+.|++
T Consensus 245 ~g~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------------~~~~~~~~~~~~~~l~~~L~~ 308 (375)
T 2eh6_A 245 GGVPIGAILAR-EEVAQSFTPGSHGSTFGGNPLACRAGTVVVDE---------------VEKLLPHVREVGNYFKEKLKE 308 (375)
T ss_dssp TTSCCEEEEEE-HHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEc-HHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH
Confidence 79999999997 78877776533345678899999998888872 115677888899999999988
Q ss_pred cCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec--CChhHHHHHH
Q 012785 371 SGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISML--DRDENYNLFV 448 (456)
Q Consensus 371 ~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l 448 (456)
++.. ..+ +.++|+|++++.+...+.+.|.++||.+.|+ +++++||+++ .+++++++++
T Consensus 309 ~~~~-~~~--------------~~g~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----~~~~iRi~~~~~~~~~~i~~~~ 368 (375)
T 2eh6_A 309 LGKG-KVK--------------GRGLMLGLELERECKDYVLKALEKGLLINCT-----AGKVLRFLPPLIIQKEHIDRAI 368 (375)
T ss_dssp TTSS-EEE--------------EETTEEEEECSSCCHHHHHHHHHTTEECEEE-----TTTEEEECCCTTCCHHHHHHHH
T ss_pred HhcC-Cce--------------EEEEEEEEEEcCcHHHHHHHHHHCCCEEecC-----CCCEEEEECCCCCCHHHHHHHH
Confidence 6531 111 2233799998755566777788899999985 2789999975 4899999999
Q ss_pred HHHHhhh
Q 012785 449 QRLSKIL 455 (456)
Q Consensus 449 ~~L~~~l 455 (456)
++|++++
T Consensus 369 ~~l~~~l 375 (375)
T 2eh6_A 369 SVLREIL 375 (375)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9999874
No 100
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.96 E-value=9.6e-29 Score=247.28 Aligned_cols=269 Identities=12% Similarity=0.090 Sum_probs=201.7
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCC----------CCCCCcEEEEeCCCCCChhhhhhhc
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQ----------DASEPISVVSAAPYYSSYPSITDCV 211 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~----------gd~~~~~Vlv~~P~y~~~~~~~~~~ 211 (456)
..++++.++++++ .+++++|+|+++++..+++++..+ ++ +|+++.|+|+++...+...
T Consensus 80 ~~~l~~~la~~~g--------~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~----~vi~~~~~~~~~~~~~~~~ 147 (392)
T 3ruy_A 80 LGPWYEKVAKLTN--------KEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRA----EIIVCEDNFHGRTMGAVSM 147 (392)
T ss_dssp HHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCC----EEEEETTCCCCSSHHHHHT
T ss_pred HHHHHHHHHHhcC--------CCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCc----EEEEEcCCcCCCCHhhhhc
Confidence 3678888887764 469999999999999999987644 56 9999999999887666554
Q ss_pred CCe-------------Eeeecc-Ccccccc---CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCC
Q 012785 212 KSR-------------LYKWAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYW 265 (456)
Q Consensus 212 g~~-------------~~~~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~ 265 (456)
+.. +..++. |.+.++. .++++|++++||||||.+++ ++|+++|+++|+||+|.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~ 227 (392)
T 3ruy_A 148 SSNEEYKRGFGPMLPGIIVIPYGDLEALKAAITPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTG 227 (392)
T ss_dssp CSCTTTTTTCCSCCSSEEEECTTCHHHHHHHCCTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTT
T ss_pred cCChhhccccCCCCCCCeeeCcccHHHHHHHhccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhC
Confidence 322 333333 5555543 46799999999999999986 278999999999999975
Q ss_pred CCCCC--CC-CCCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCC
Q 012785 266 PQYTS--IT-YPADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKP 341 (456)
Q Consensus 266 ~~~~~--~~-~~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~ 341 (456)
..+.+ .. ...+...-+.||||.++ +| +|+||++++ +++++.+.......+++.+++.|.++.+.|+.+.
T Consensus 228 ~~~~g~~~~~~~~~~~~d~~~~SK~l~-gG~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----- 300 (392)
T 3ruy_A 228 LGRTGKVFACDWDNVTPDMYILGKALG-GGVFPISCAAAN-RDILGVFEPGSHGSTFGGNPLACAVSIAALEVLE----- 300 (392)
T ss_dssp TTTTSSSSGGGGGTCCCSEEEECGGGG-TTTSCCEEEEEC-HHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHH-----
T ss_pred CCccccchhhhccCCCCCEEEEchhhh-CChhhhEEEEEC-HHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHH-----
Confidence 43322 11 11111122347899887 57 999999996 8888888776666788999999999999998421
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhcC--CccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEE
Q 012785 342 SGSEDECFFEFTNHQMSTRWKQLRMAVQKSG--LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKIL 419 (456)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~--~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~ 419 (456)
+ ++.+++++++++.+.+.|++++ .+....+ .++|+++.++.+.+.+.+.|.++||.
T Consensus 301 ------~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--------------~g~~~~~~~~~~~~~l~~~l~~~gi~ 358 (392)
T 3ruy_A 301 ------E--EKLTERSLQLGEKLVGQLKEIDNPMITEVRG--------------KGLFIGIELNEPARPYCEQLKAAGLL 358 (392)
T ss_dssp ------H--TTHHHHHHHHHHHHHHHHTTCCCTTEEEEEE--------------ETTEEEEEESSCSHHHHHHHHTTTEE
T ss_pred ------h--hhHHHHHHHHHHHHHHHHHHhcCCCceEEEe--------------eeeEEEEEEcchHHHHHHHHHHCCcE
Confidence 1 4677888999999999998763 2222222 23467777765667788888899999
Q ss_pred eecCCCCCCCCCeEEEEe--cCChhHHHHHHHHHHhhhC
Q 012785 420 TRSGKHFGFSPKYVRISM--LDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 420 v~pg~~fg~~~~~iRis~--~~~~e~i~~~l~~L~~~l~ 456 (456)
++||. ++++|+++ ..+++++++++++|+++++
T Consensus 359 v~~~~-----~~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 392 (392)
T 3ruy_A 359 CKETH-----ENVIRIAPPLVISEEDLEWAFQKIKAVLS 392 (392)
T ss_dssp CCCBT-----TTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred EecCC-----CCEEEEECCCCCCHHHHHHHHHHHHHHhC
Confidence 99964 78999994 3589999999999999874
No 101
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.96 E-value=8.7e-28 Score=240.31 Aligned_cols=280 Identities=11% Similarity=0.054 Sum_probs=209.9
Q ss_pred CHHHHHHHHHHHHHhcCccCCCc-eEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh--hhhhhcCCeEeee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENH-HIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP--SITDCVKSRLYKW 218 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~-~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~--~~~~~~g~~~~~~ 218 (456)
..+++++++++++. +++ +|++|+|+++++.+++.++..+|| +|++++|+|+.+. ..++..|++++.+
T Consensus 53 ~~~l~~~la~~~~~------~~~~~v~~~~g~t~al~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~g~~~~~v 122 (396)
T 2ch1_A 53 MDEVKDGLRYIFQT------ENRATMCVSGSAHAGMEAMLSNLLEEGD----RVLIAVNGIWAERAVEMSERYGADVRTI 122 (396)
T ss_dssp HHHHHHHHHHHHTC------CCSCEEEESSCHHHHHHHHHHHHCCTTC----EEEEEESSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHhCC------CCCcEEEECCcHHHHHHHHHHHhcCCCC----eEEEEcCCcccHHHHHHHHHcCCceEEe
Confidence 47899999999874 445 899999999999999999999999 9999999999985 4778889998877
Q ss_pred ccC------cccccc---C-CCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEe
Q 012785 219 AGD------AKRFNK---D-GPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLF 282 (456)
Q Consensus 219 ~~d------~~~l~~---~-~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~ 282 (456)
+.| .+.++. . ++++|++++|+||||.+++ ++|+++|+++|+||+|... ..++. ...+.++++.
T Consensus 123 ~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g-~~~~~~~~~~~d~~~~ 201 (396)
T 2ch1_A 123 EGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLC-GVPFYMDKWEIDAVYT 201 (396)
T ss_dssp ECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBT-TBCCCTTTTTCCEEEC
T ss_pred cCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEcccccc-CCccchhhcCcCEEEE
Confidence 643 344432 2 6789999999999999987 4899999999999999832 22221 2223468889
Q ss_pred cCccccCCCCceEEEEEEeCHHHHHHHHHHH-----------------------hhccCcCChHHHHHHHHHHHhhhCCC
Q 012785 283 TVSKSTGHAGTRIGWALVKDMEVAKKMTKYI-----------------------ELNTIGVSKDSQLRAAKVLKVVSDSC 339 (456)
Q Consensus 283 S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~-----------------------~~~~~~~s~~~q~~a~~~L~~~~~~~ 339 (456)
|++|.++ ++.++||++++ +++++.+.... .....+.+...|.++.++|+.+.
T Consensus 202 s~~K~~~-~~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~--- 276 (396)
T 2ch1_A 202 GAQKVLG-APPGITPISIS-PKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIA--- 276 (396)
T ss_dssp CCC-CCC-CCSSCEEEEEC-HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHH---
T ss_pred cCCcccc-CCCCeEEEEEC-HHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHH---
Confidence 9999765 33456999996 88887765320 11224567788888888887421
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHh-C
Q 012785 340 KPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKG-N 416 (456)
Q Consensus 340 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~-~ 416 (456)
++++++.+++++++++.+.+.|+++ ++.+..+.+++ ..+.++|+.++. +.+.+.+.|.+ +
T Consensus 277 -------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~L~~~~ 339 (396)
T 2ch1_A 277 -------EEGLENQIKRRIECAQILYEGLGKM-GLDIFVKDPRH---------RLPTVTGIMIPKGVDWWKVSQYAMNNF 339 (396)
T ss_dssp -------HHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGG---------BCTTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred -------HhhHHHHHHHHHHHHHHHHHHHHHC-CCeeccCCccc---------cCCceEEEEcCCCCCHHHHHHHHHHhC
Confidence 3457788999999999999999987 45555554432 112368888752 45667666655 5
Q ss_pred CEEeecCCCCCCCCCeEEEEe-c--CChhHHHHHHHHHHhhh
Q 012785 417 KILTRSGKHFGFSPKYVRISM-L--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 417 gI~v~pg~~fg~~~~~iRis~-~--~~~e~i~~~l~~L~~~l 455 (456)
||.+++|..+. .++++||++ . .++|++++++++|++++
T Consensus 340 gi~v~~g~~~~-~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l 380 (396)
T 2ch1_A 340 SLEVQGGLGPT-FGKAWRVGIMGECSTVQKIQFYLYGFKESL 380 (396)
T ss_dssp CBCCBCCCGGG-TTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred CEEEecCcccc-CCCEEEEECCCCcCCHHHHHHHHHHHHHHH
Confidence 99999987653 378999998 3 27889999999999875
No 102
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.96 E-value=1.2e-27 Score=238.12 Aligned_cols=310 Identities=14% Similarity=0.077 Sum_probs=207.1
Q ss_pred cCCC-CeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHH-HhcCccCCCceEEE
Q 012785 91 DGGE-RIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAITENHHIVV 168 (456)
Q Consensus 91 ~~~~-~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~I~~ 168 (456)
..+. +++|++.+.|+.+.++.+.++ +. . |. + ...+++.++++.. .+|.. +++++++
T Consensus 24 ~~g~~~v~~~~~~~~~~~~~~~v~~a-----~~-~------~~---~-----~~~~~~~~~~~~a~~~g~~--~~~~~~~ 81 (374)
T 2aeu_A 24 EKGRDALYDLSGLSGGFLIDEKDKAL-----LN-T------YI---G-----SSYFAEKVNEYGLKHLGGD--ENDKCVG 81 (374)
T ss_dssp HTCGGGCEECSSCCCCCCCCHHHHHH-----HT-S------TT---H-----HHHHHHHHHHHHHHHHTCC--TTEEEEE
T ss_pred ccCccceeeecccCCCCCCCHHHHHH-----HH-H------hc---C-----chHHHHHHHHHHHHHhCCC--CcceEEE
Confidence 3455 689999988777766655543 11 1 11 1 1233344444442 23332 2468999
Q ss_pred ccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh---hhhhcCCeEeeeccCcccccc--CCCeE-EEEcCCCCCC
Q 012785 169 GTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS---ITDCVKSRLYKWAGDAKRFNK--DGPYI-ELVTSPNNPD 242 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~---~~~~~g~~~~~~~~d~~~l~~--~~~~~-i~v~~P~NPt 242 (456)
|+|+++++.+++.++ +|| +|++++|+|+.+.. .++..|++++.+ .|.+.++. .++++ |++++|||||
T Consensus 82 ~~ggt~a~~~~~~~~--~gd----~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v-~d~~~l~~~~~~~~~~v~~~~p~npt 154 (374)
T 2aeu_A 82 FNRTSSAILATILAL--KPK----KVIHYLPELPGHPSIERSCKIVNAKYFES-DKVGEILNKIDKDTLVIITGSTMDLK 154 (374)
T ss_dssp ESSHHHHHHHHHHHH--CCS----EEEEECSSSSCCTHHHHHHHHTTCEEEEE-SCHHHHHTTCCTTEEEEEECBCTTSC
T ss_pred EcChHHHHHHHHHhC--CCC----EEEEecCCCCccHHHHHHHHHcCcEEEEe-CCHHHHHhcCCCccEEEEEccCCCCC
Confidence 999999999999988 899 99999999988554 567789998888 77776653 36789 9999999999
Q ss_pred c-ccch-----HHhhhcCcEEEeeecCCCCC----CCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHH
Q 012785 243 G-SVRQ-----SVVNRSGGILVHDLAYYWPQ----YTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKY 312 (456)
Q Consensus 243 G-~~~~-----~l~~~~~~~iI~De~y~~~~----~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~ 312 (456)
| ...+ ++|+++|+++|+||+|.... ....+...+.+++++|+||.+ +|+|+||++++ ++++++++..
T Consensus 155 G~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l--~g~~~G~~~~~-~~~~~~l~~~ 231 (374)
T 2aeu_A 155 VIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLM--EGPRGGLLAGK-KELVDKIYIE 231 (374)
T ss_dssp BCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSS--SSCSCEEEEEE-HHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccc--cCcceEEEEEC-HHHHHHHHHh
Confidence 9 4433 38899999999999987421 110011124579999999984 57899999997 8999999887
Q ss_pred HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHH----HHHHHHHHHhc---CCccc-cCCCCccc
Q 012785 313 IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTR----WKQLRMAVQKS---GLFSV-PELPSQFC 384 (456)
Q Consensus 313 ~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~l~~~L~~~---~~~~~-~~~~g~~~ 384 (456)
......+++++.|.++.+.|+.+ . .+.+++..+..+.. ++.+.+.|... .++.+ ..+.|.+
T Consensus 232 ~~~~~~~~~~~~~~a~~~al~~~--~--------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~- 300 (374)
T 2aeu_A 232 GTKFGLEAQPPLLAGIYRALKNF--N--------LERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFV- 300 (374)
T ss_dssp HHTTTCBCCHHHHHHHHHHHHHC--C--------HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEE-
T ss_pred hccccCCCCHHHHHHHHHHHHHH--h--------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEE-
Confidence 76555678999999999988742 1 11222222222222 45555555543 12333 3344433
Q ss_pred ccccccCCCCCceEEeecCccH------HHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC-C--hhHHHHHHHHHHhhh
Q 012785 385 TFLGRAFEPQPAFAWLKCEQEI------EDCESFLKGNKILTRSGKHFGFSPKYVRISMLD-R--DENYNLFVQRLSKIL 455 (456)
Q Consensus 385 ~~~~~~~~~~~~f~~~~~~~~~------~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-~--~e~i~~~l~~L~~~l 455 (456)
|.|.+++... +.+.++++++||.++||..|...++++||+++. + +++++.+++.|++.+
T Consensus 301 ------------~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l 368 (374)
T 2aeu_A 301 ------------IKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESI 368 (374)
T ss_dssp ------------EEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHH
T ss_pred ------------EEeecccccccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHH
Confidence 5565554211 144567778999999998886557799999974 2 224777777777664
No 103
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.96 E-value=4.1e-28 Score=243.51 Aligned_cols=322 Identities=12% Similarity=0.099 Sum_probs=212.6
Q ss_pred EecCCCCCCCchhHhhhccccccc-ccCccccccccC--CCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHH
Q 012785 98 NVDHGDPTMYEKYWQKVGDKTTIV-IPGWQSLSYFSD--VRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQ 174 (456)
Q Consensus 98 ~l~~g~p~~~~~~~~~~~~~~~~~-~~~~~~~~~y~~--~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~ 174 (456)
.++.++|++..++.+......... ..+......|.. ..+ ..+++++++++++. ++.|++++ +++
T Consensus 24 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~la~~~g~-------~~~i~~~s-G~~ 90 (398)
T 2rfv_A 24 TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPT-----TDALEKKLAVLERG-------EAGLATAS-GIS 90 (398)
T ss_dssp TCCSSCCCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHH-----HHHHHHHHHHHHTC-------SEEEEESS-HHH
T ss_pred CCCcCCCCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChH-----HHHHHHHHHHHhCC-------CcEEEECC-HHH
Confidence 477888888776554432211111 001011111321 122 36788888888753 24455555 559
Q ss_pred HHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh----hhcCCeEeeecc-Ccccccc---CCCeEEEEcCCCCCCcccc
Q 012785 175 LFQAALYALSSQDASEPISVVSAAPYYSSYPSIT----DCVKSRLYKWAG-DAKRFNK---DGPYIELVTSPNNPDGSVR 246 (456)
Q Consensus 175 al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~----~~~g~~~~~~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~ 246 (456)
++..++.++.++|| +|++++|+|+.+...+ +..|.+++.++. |.+.++. .+++++++++|+||||.++
T Consensus 91 a~~~~l~~~~~~gd----~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~ 166 (398)
T 2rfv_A 91 AITTTLLTLCQQGD----HIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLV 166 (398)
T ss_dssp HHHHHHHHHCCTTC----EEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTTEEEEEEESSBTTTTBCC
T ss_pred HHHHHHHHHhCCCC----EEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhcCCCCeEEEEECCCCCCCccc
Confidence 99999999999999 9999999999988776 778999888776 4555543 3678999999999999998
Q ss_pred h-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCccccCCCCceE-EEEEEeCHHHHH-HHHHHHhhc-cC
Q 012785 247 Q-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRI-GWALVKDMEVAK-KMTKYIELN-TI 318 (456)
Q Consensus 247 ~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~Ri-G~l~~~~~~~~~-~l~~~~~~~-~~ 318 (456)
+ ++|+++|+++|+||+|....+.. +...+.++++.|+||.++.+|+|+ ||++++ +++++ .++...... ..
T Consensus 167 ~l~~i~~l~~~~~~~li~De~~~~~~~~~-~~~~~~di~~~s~sK~~~~~g~~~~G~~~~~-~~~~~~~~~~~~~~~~~~ 244 (398)
T 2rfv_A 167 DIETVAGIAHQQGALLVVDNTFMSPYCQQ-PLQLGADIVVHSVTKYINGHGDVIGGIIVGK-QEFIDQARFVGLKDITGG 244 (398)
T ss_dssp CHHHHHHHHHHTTCEEEEECTTTCTTTCC-GGGGTCSEEEEETTTTTTCSSCCCCEEEEEC-HHHHHHHHHTHHHHTTCC
T ss_pred CHHHHHHHHHHcCCEEEEECCCcccccCC-chhhCCcEEEEeCcccccCCCCceEEEEEEC-HHHHHHHHHHHHHhCCCC
Confidence 7 48999999999999998643321 122367899999999998899999 999997 77776 666665544 56
Q ss_pred cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC-----CcccccccccCCC
Q 012785 319 GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELP-----SQFCTFLGRAFEP 393 (456)
Q Consensus 319 ~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-----g~~~~~~~~~~~~ 393 (456)
+.+++.|.++.+.|+. ... ..+...++.+.+.+.|++.+.+.....+ .++ .+.......
T Consensus 245 ~~~~~~~~~~~~~l~~-----------~~~----~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~-~~~~~~~~~ 308 (398)
T 2rfv_A 245 CMSPFNAWLTLRGVKT-----------LGI----RMERHCENALKIARFLEGHPSITRVYYPGLSSHPQY-ELGQRQMSL 308 (398)
T ss_dssp CCCHHHHHHHHHHHTT-----------HHH----HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTH-HHHHHHCSS
T ss_pred CCCHHHHHHHHhhhhh-----------HHH----HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccH-HHHHhhCCC
Confidence 7889999988888862 122 2344556677777778765321100000 000 000000012
Q ss_pred CCceEEeecCccHHHHHHHHH---hCCEEeecCCCCC----------------------CCCCeEEEEecC--ChhHHHH
Q 012785 394 QPAFAWLKCEQEIEDCESFLK---GNKILTRSGKHFG----------------------FSPKYVRISMLD--RDENYNL 446 (456)
Q Consensus 394 ~~~f~~~~~~~~~~~~~~~l~---~~gI~v~pg~~fg----------------------~~~~~iRis~~~--~~e~i~~ 446 (456)
.++++++++++..+....++. ..||.+.+|+.|. ..++++|||++. ++++++.
T Consensus 309 ~g~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~ 388 (398)
T 2rfv_A 309 PGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIIND 388 (398)
T ss_dssp CCSEEEEEETTHHHHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHH
T ss_pred CceEEEEEEcCCHHHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHH
Confidence 355677788743334444444 4488899987642 226899999976 5677888
Q ss_pred HHHHHHhh
Q 012785 447 FVQRLSKI 454 (456)
Q Consensus 447 ~l~~L~~~ 454 (456)
+++.|+++
T Consensus 389 l~~al~~~ 396 (398)
T 2rfv_A 389 LEHAIRKA 396 (398)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 88887764
No 104
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.96 E-value=1.1e-27 Score=244.43 Aligned_cols=324 Identities=13% Similarity=0.077 Sum_probs=215.2
Q ss_pred CCeEEecCC-CCCCCchhHhhhccccccccc-CccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 94 ERIINVDHG-DPTMYEKYWQKVGDKTTIVIP-GWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 94 ~~~i~l~~g-~p~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
..+|+|+.| +|+++.++.+.+..... ... .......|+. .| .+ +++++++++.. .| .+++++++
T Consensus 89 ~~~i~l~~g~~~~~~~~~~i~~a~~~~-~~~~~~~~~~~Y~~-~g-----~~-~~~~l~~~la~~~g-----~~~~i~~~ 155 (464)
T 1ibj_A 89 TLLVNLDNKFDPFDAMSTPLYQTATFK-QPSAIENGPYDYTR-SG-----NP-TRDALESLLAKLDK-----ADRAFCFT 155 (464)
T ss_dssp HHHTCCCCSSCTTCCSSCCCCCCSBCC-CSSSSCCCSCSBTT-TC-----CH-HHHHHHHHHHHHHT-----CSEEEEES
T ss_pred CeEEECCCCCCCCCCCCccHHhhhhhh-hhcccccCCccccC-CC-----CH-HHHHHHHHHHHHhC-----CCeEEEEC
Confidence 357899997 88888776555432211 000 1111234653 44 34 67777776643 33 13666777
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh----hhhcCCeEeeecc-Ccccccc---CCCeEEEEcCCCCCC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI----TDCVKSRLYKWAG-DAKRFNK---DGPYIELVTSPNNPD 242 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~----~~~~g~~~~~~~~-d~~~l~~---~~~~~i~v~~P~NPt 242 (456)
|+++++.+++. ++++|| +|++++|+|+.+... ++..|.+++.++. |.+.++. .++++|++++|||||
T Consensus 156 sGt~al~~~l~-~~~~Gd----~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~~tk~v~l~~p~Npt 230 (464)
T 1ibj_A 156 SGMAALSAVTH-LIKNGE----EIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPR 230 (464)
T ss_dssp SHHHHHHHHHT-TSCTTC----EEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCSSEEEEEECSSCTTT
T ss_pred CHHHHHHHHHH-HhCCCC----EEEEECCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccCceEEEEeCCCCCC
Confidence 77889998886 778999 999999999998753 5677999888776 5555543 467999999999999
Q ss_pred cccch-----HHhhhcCcEEEeeecCCCCCC-CCCCCCCCCcEEEecCccccCC-CCceEEEEEEeCHHHHHHHHHHHhh
Q 012785 243 GSVRQ-----SVVNRSGGILVHDLAYYWPQY-TSITYPADHDLMLFTVSKSTGH-AGTRIGWALVKDMEVAKKMTKYIEL 315 (456)
Q Consensus 243 G~~~~-----~l~~~~~~~iI~De~y~~~~~-~~~~~~~~~~i~i~S~SK~~g~-~G~RiG~l~~~~~~~~~~l~~~~~~ 315 (456)
|.+++ ++|+++|+++|+||+|..+.. .++ ..+++++++|+||.++. +|+|+||++++++++++.+......
T Consensus 231 G~v~~l~~i~~la~~~gi~livDea~~~g~~~~~~--~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~ 308 (464)
T 1ibj_A 231 QQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNS 308 (464)
T ss_dssp CCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGG--GTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHH
T ss_pred CEeecHHHHHHHHHHcCCEEEEECCCcccccCChh--hcCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHh
Confidence 99987 489999999999999986432 233 24689999999998864 4999999999756888888887665
Q ss_pred ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcc---ccCC--CCccccccccc
Q 012785 316 NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFS---VPEL--PSQFCTFLGRA 390 (456)
Q Consensus 316 ~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~---~~~~--~g~~~~~~~~~ 390 (456)
...+.+++.|.++.+.|+.. ...+++ ..++...+.+.|++.+.+. ...- ..++ .+....
T Consensus 309 ~g~~~~~~~~~a~~~al~~~-----------~~r~~~----~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~-~~~~~~ 372 (464)
T 1ibj_A 309 EGSGLAPFDCWLCLRGIKTM-----------ALRIEK----QQENARKIAMYLSSHPRVKKVYYAGLPDHPGH-HLHFSQ 372 (464)
T ss_dssp TTCBCCHHHHHHHHHHHTTH-----------HHHHHH----HHHHHHHHHHHHHTCTTCCEEECTTSTTSTTH-HHHTTT
T ss_pred cCCCCCHHHHHHHHhchhhH-----------HHHHHH----HHHHHHHHHHHHHhCCCceEEECCCCCCCcch-HHHhcc
Confidence 56778899999888877621 122222 2233334445555432110 0000 0011 000000
Q ss_pred CCCCCceEEeecCcc--HHHHHHHHHhCCEEeecCC------------CC----------CCCCCeEEEEecCChhHHHH
Q 012785 391 FEPQPAFAWLKCEQE--IEDCESFLKGNKILTRSGK------------HF----------GFSPKYVRISMLDRDENYNL 446 (456)
Q Consensus 391 ~~~~~~f~~~~~~~~--~~~~~~~l~~~gI~v~pg~------------~f----------g~~~~~iRis~~~~~e~i~~ 446 (456)
....++++++.+++. .+.+.+.|+..||.+++|. +| |..++++||+++. |++++
T Consensus 373 ~~g~g~~~~~~l~~~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~--edi~~ 450 (464)
T 1ibj_A 373 AKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI--EDVDD 450 (464)
T ss_dssp CSCCCSEEEEECSCHHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS--SCHHH
T ss_pred CCCCceEEEEEECCHHHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC--CCHHH
Confidence 011345788888642 2346666777899999986 22 2236799999976 89999
Q ss_pred HHHHHHhhh
Q 012785 447 FVQRLSKIL 455 (456)
Q Consensus 447 ~l~~L~~~l 455 (456)
++++|++++
T Consensus 451 li~~L~~al 459 (464)
T 1ibj_A 451 LISDLDIAF 459 (464)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999876
No 105
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.96 E-value=4e-28 Score=245.05 Aligned_cols=277 Identities=14% Similarity=0.111 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC----CCCCCCcEEEEeCCCCCChhhhhhhc---CCeE
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS----QDASEPISVVSAAPYYSSYPSITDCV---KSRL 215 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~----~gd~~~~~Vlv~~P~y~~~~~~~~~~---g~~~ 215 (456)
.++++.++++++. ++++|++|+|+++++.++++++.. +|| +|+++.|+|+.+...+..+ |.++
T Consensus 71 ~~l~~~la~~~~~------~~~~v~~~~ggt~a~~~a~~~l~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~~~~g~~~ 140 (423)
T 3lvm_A 71 DIARNQIADLVGA------DPREIVFTSGATESDNLAIKGAANFYQKKGK----HIITSKTEHKAVLDTCRQLEREGFEV 140 (423)
T ss_dssp HHHHHHHHHHHTC------CGGGEEEESSHHHHHHHHHHHHHHHHTTTCC----EEEEETTSCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCC------CCCeEEEeCChHHHHHHHHHHHHHhhccCCC----EEEECCccchHHHHHHHHHHHcCCEE
Confidence 6788888888754 457999999999999999998874 788 9999999999988777544 9998
Q ss_pred eeeccC------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEE
Q 012785 216 YKWAGD------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLML 281 (456)
Q Consensus 216 ~~~~~d------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i 281 (456)
+.++.| .+.++. .+++++++++|+||||.+++ ++|+++|+++|+||+|.......-....+.++++
T Consensus 141 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~ 220 (423)
T 3lvm_A 141 TYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMS 220 (423)
T ss_dssp EEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTSCCSEEE
T ss_pred EEeccCCCCccCHHHHHHhcCCCcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhcCCCEEE
Confidence 877764 444432 36789999999999999987 4899999999999999863321111234578999
Q ss_pred ecCccccCCCCceEEEEEEeCHHHHHHHHHHHh-------hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHH
Q 012785 282 FTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE-------LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTN 354 (456)
Q Consensus 282 ~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~-------~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~ 354 (456)
+|+||.+|.+| +||++++ ++..+.+..... ......+...+.++.++++.+ ++++++.+
T Consensus 221 ~s~sK~~g~~g--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-----------~~~~~~~~ 286 (423)
T 3lvm_A 221 FSGHKIYGPKG--IGALYVR-RKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIA-----------KEEMATEM 286 (423)
T ss_dssp EESTTTTSCSS--CEEEEEC-BTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHH-----------HHHHHHHH
T ss_pred echHHhcCCCC--eEEEEEe-ccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHH-----------HHHHHHHH
Confidence 99999888777 8999997 555554443321 223455667777666766632 34578899
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCCC----
Q 012785 355 HQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGFS---- 429 (456)
Q Consensus 355 ~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~~---- 429 (456)
++++++++.+.+.|++++++.+..+.+.. .++++++.++. +.+.+.+.|.+ |.+.+|..|...
T Consensus 287 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~l~~--i~v~~g~~~~~~~~~~ 354 (423)
T 3lvm_A 287 ERLRGLRNRLWNGIKDIEEVYLNGDLEHG----------APNILNVSFNYVEGESLIMALKD--LAVSSGSACTSASLEP 354 (423)
T ss_dssp HHHHHHHHHHHHHHTTSTTEEEESCSTTB----------CTTEEEEEETTSCHHHHHHHTTT--EECBCCCC-----CCC
T ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCcccc----------CCCeEEEEeCCCCHHHHHHHHhh--heeccCccccCCCccc
Confidence 99999999999999888666665544311 11245555543 56667777766 999999876431
Q ss_pred --------------CCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 430 --------------PKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 430 --------------~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
.+++||++.. +++++++++++|++++
T Consensus 355 ~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~ 396 (423)
T 3lvm_A 355 SYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSI 396 (423)
T ss_dssp CHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4899999974 7899999999999875
No 106
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.96 E-value=8.9e-28 Score=239.92 Aligned_cols=278 Identities=13% Similarity=0.057 Sum_probs=204.7
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCCh--hhhhhhcCCeEeeec
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSY--PSITDCVKSRLYKWA 219 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~--~~~~~~~g~~~~~~~ 219 (456)
..+++++++++++. ++++|++|+|+++++.++++++.++|| +|++++|+|+.+ ...++..|.+++.++
T Consensus 44 ~~~l~~~la~~~g~------~~~~v~~t~g~t~a~~~~~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~ 113 (392)
T 2z9v_A 44 YEKVVDKAQKAMRL------SNKPVILHGEPVLGLEAAAASLISPDD----VVLNLASGVYGKGFGYWAKRYSPHLLEIE 113 (392)
T ss_dssp HHHHHHHHHHHTTC------SSCCEEESSCTHHHHHHHHHHHCCTTC----CEEEEESSHHHHHHHHHHHHHCSCEEEEE
T ss_pred HHHHHHHHHHHhCC------CCCEEEEeCCchHHHHHHHHHhcCCCC----EEEEecCCcccHHHHHHHHHcCCceEEee
Confidence 47899999998863 357999999999999999999999999 999999999875 344455798888776
Q ss_pred cC------cccccc-----CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEe
Q 012785 220 GD------AKRFNK-----DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLF 282 (456)
Q Consensus 220 ~d------~~~l~~-----~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~ 282 (456)
.| .+.++. .++++|++++|+||||.+++ ++|+++|+++|+||+|..... ++. ...+.+++++
T Consensus 114 ~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~-~~~~~~~~~d~~~~ 192 (392)
T 2z9v_A 114 VPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGM-KTHPEDCKADIYVT 192 (392)
T ss_dssp CCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTB-SCCGGGGTCSEEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCc-ccccccccceEEEe
Confidence 54 333321 36789999999999999987 489999999999999974221 211 1224689999
Q ss_pred cCcccc-CCCCceEEEEEEeCHHHHHHHHHHH--------------------hhccCcCChHHHHHHHHHHHhhhCCCCC
Q 012785 283 TVSKST-GHAGTRIGWALVKDMEVAKKMTKYI--------------------ELNTIGVSKDSQLRAAKVLKVVSDSCKP 341 (456)
Q Consensus 283 S~SK~~-g~~G~RiG~l~~~~~~~~~~l~~~~--------------------~~~~~~~s~~~q~~a~~~L~~~~~~~~~ 341 (456)
|+||.+ |.+|+ ||++++ ++++++++... .....+.+...+.++.++++.+
T Consensus 193 s~sK~~~~~~g~--G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~------ 263 (392)
T 2z9v_A 193 GPNKCLGAPPGL--TMMGVS-ERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLY------ 263 (392)
T ss_dssp CSSSTTCCCSCC--EEEEEC-HHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHH------
T ss_pred cCcccccCCCce--eEEEEC-HHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHH------
Confidence 999955 45564 999997 88888876421 1112344555666666666632
Q ss_pred CCCcchhH-HHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhC-C
Q 012785 342 SGSEDECF-FEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGN-K 417 (456)
Q Consensus 342 ~~~~~~~~-l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~-g 417 (456)
.++ +++.+++++++++.+.+.|+++ ++.+..|..+. ..++++|+.++. +.+.+.+.|.++ |
T Consensus 264 -----~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~L~~~~g 328 (392)
T 2z9v_A 264 -----LNEGPEAVWARHALTAKAMRAGVTAM-GLSVWAASDSI---------ASPTTTAVRTPDGVDEKALRQAARARYG 328 (392)
T ss_dssp -----HHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGG---------BCTTEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred -----HhccHHHHHHHHHHHHHHHHHHHHHc-CCeeccCCccc---------cCCceEEEECCCCCCHHHHHHHHHhcCC
Confidence 233 6778899999999999999887 45554422110 122368888852 456677777776 9
Q ss_pred EEeecCCCCCCCCCeEEEEe-c--CChhHHHHHHHHHHhhh
Q 012785 418 ILTRSGKHFGFSPKYVRISM-L--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 418 I~v~pg~~fg~~~~~iRis~-~--~~~e~i~~~l~~L~~~l 455 (456)
|.+++|..+. .++++||++ + .+++++++++++|++++
T Consensus 329 i~v~~g~~~~-~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~ 368 (392)
T 2z9v_A 329 VVFSSGRGET-LGKLTRIGHMGPTAQPIYAIAALTALGGAM 368 (392)
T ss_dssp EECEECCGGG-TTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCC-CCCeEEEeCcccccCHHHHHHHHHHHHHHH
Confidence 9999998654 378999994 5 48999999999998875
No 107
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.96 E-value=3.3e-28 Score=244.37 Aligned_cols=287 Identities=12% Similarity=0.083 Sum_probs=208.5
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh---cCCCCCCCcEEEEeCCCCCChhhhhhh----cCCe
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL---SSQDASEPISVVSAAPYYSSYPSITDC----VKSR 214 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l---~~~gd~~~~~Vlv~~P~y~~~~~~~~~----~g~~ 214 (456)
..+++++++++++. ++++|++|+|+++++.+++.++ ..+|| +|+++.|+|+.+...+.. .|.+
T Consensus 71 ~~~l~~~la~~~g~------~~~~v~~~~g~t~al~~~~~~l~~~~~~gd----~vi~~~~~~~~~~~~~~~~~~~~g~~ 140 (406)
T 3cai_A 71 LDAAREAVADLVNA------DPGGVVLGADRAVLLSLLAEASSSRAGLGY----EVIVSRLDDEANIAPWLRAAHRYGAK 140 (406)
T ss_dssp HHHHHHHHHHHHTC------CGGGEEEESCHHHHHHHHHHHTGGGGBTTC----EEEEETTSCGGGTHHHHHHHHHHBCE
T ss_pred HHHHHHHHHHHhCC------CCCeEEEeCChHHHHHHHHHHHhhccCCCC----EEEEcCCccHHHHHHHHHHHHhcCCe
Confidence 47899999999863 4578999999999999999987 78899 999999999987665544 6998
Q ss_pred EeeeccC-------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCc
Q 012785 215 LYKWAGD-------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHD 278 (456)
Q Consensus 215 ~~~~~~d-------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~ 278 (456)
++.++.| .+.++. .++++|++++|+||||.+++ ++|+++|+++|+|++|..... ++. ...+.+
T Consensus 141 v~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~-~~~~~~~~~d 219 (406)
T 3cai_A 141 VKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYR-LLDIRETDAD 219 (406)
T ss_dssp EEEECCCTTTCCCCGGGHHHHCCTTEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTC-CCCHHHHCCS
T ss_pred EEEEecCcccCCcCHHHHHHHhCCCceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCC-CCCchhcCCC
Confidence 8877654 344432 36789999999999999987 489999999999999984221 121 123578
Q ss_pred EEEecCccccCCCCceEE-EEEEeCHHHHHHHHHHHh---------hccCcCChHHHHHHHHHHHhhhCCCC--CCC--C
Q 012785 279 LMLFTVSKSTGHAGTRIG-WALVKDMEVAKKMTKYIE---------LNTIGVSKDSQLRAAKVLKVVSDSCK--PSG--S 344 (456)
Q Consensus 279 i~i~S~SK~~g~~G~RiG-~l~~~~~~~~~~l~~~~~---------~~~~~~s~~~q~~a~~~L~~~~~~~~--~~~--~ 344 (456)
++++|+||.+| ++ +| |++++ ++++++++.... ......+...+.++.++++.+.+... .+. .
T Consensus 220 ~~~~s~~K~~g-~~--~G~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~ 295 (406)
T 3cai_A 220 VVTVNAHAWGG-PP--IGAMVFRD-PSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRE 295 (406)
T ss_dssp EEEEEGGGGTS-CS--CEEEEESC-HHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHH
T ss_pred EEEeehhhhcC-CC--cCeEEEEe-hHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhh
Confidence 99999999887 65 99 99996 888776654421 11234566666566666664332100 000 0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecC
Q 012785 345 EDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSG 423 (456)
Q Consensus 345 ~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg 423 (456)
.+++++++.+++++++++.+.+.|++++++.+..+.+.. ++++++.++. +.+.+.+.|.++||.+++|
T Consensus 296 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~L~~~gi~v~~g 364 (406)
T 3cai_A 296 RLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQ-----------IPVVSFAVHKVPADRVVQRLADNGILAIAN 364 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSB-----------CSEEEEEETTBCHHHHHHHHHHTTEECEEC
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCcccc-----------CCEEEEEECCcCHHHHHHHHHHCCcEEecC
Confidence 011257888999999999999999987656554443211 2257777753 5667888888999999999
Q ss_pred C------CCCC--CCCeEEEEecC--ChhHHHHHHHHHHhh
Q 012785 424 K------HFGF--SPKYVRISMLD--RDENYNLFVQRLSKI 454 (456)
Q Consensus 424 ~------~fg~--~~~~iRis~~~--~~e~i~~~l~~L~~~ 454 (456)
. .||. ..+++||++.. +++++++++++|+++
T Consensus 365 ~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~ 405 (406)
T 3cai_A 365 TGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALASL 405 (406)
T ss_dssp CSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred ChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHHh
Confidence 7 4553 25899999976 789999999999875
No 108
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.96 E-value=2.1e-28 Score=248.04 Aligned_cols=282 Identities=10% Similarity=0.000 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc--------CCCCCCCcEEEEeCCCCCChhhhhhhcCCe
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS--------SQDASEPISVVSAAPYYSSYPSITDCVKSR 214 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~--------~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~ 214 (456)
.++++++++++...-. . +.++|++|+|+++++..+++++. .+++ +|++.+|+|+++...+...+..
T Consensus 71 ~~~~~~l~~~la~~~~-~-~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~----~vi~~~~~yhg~~~~~~~~~~~ 144 (430)
T 3i4j_A 71 SDVLEEYAGRLARFVG-L-PTFRFWAVSGGSEATESAVKLARQYHVERGEPGRF----KVITRVPSYHGASLGSLAASGM 144 (430)
T ss_dssp EHHHHHHHHHHHHHTT-C-TTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCC----EEEEETTC--------------
T ss_pred CHHHHHHHHHHHHhCC-C-CCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCc----EEEEEeCCcCCCCcccccccCc
Confidence 5566666666533211 1 34699999999999999999886 3456 9999999999988766554432
Q ss_pred ---------------Eeeecc---------Ccccccc-------CCCeEEEEcCCCC-CCcccch---------HHhhhc
Q 012785 215 ---------------LYKWAG---------DAKRFNK-------DGPYIELVTSPNN-PDGSVRQ---------SVVNRS 253 (456)
Q Consensus 215 ---------------~~~~~~---------d~~~l~~-------~~~~~i~v~~P~N-PtG~~~~---------~l~~~~ 253 (456)
+..++. |.+.++. .++++++++.+|| |+|.... ++|+++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~ 224 (430)
T 3i4j_A 145 GARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEA 224 (430)
T ss_dssp -----------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHH
T ss_pred cccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHc
Confidence 112221 1133321 2335555544466 8887543 279999
Q ss_pred CcEEEeeecCCCCCCCCCC---CCC-CCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHH----HhhccCcCChHH
Q 012785 254 GGILVHDLAYYWPQYTSIT---YPA-DHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKY----IELNTIGVSKDS 324 (456)
Q Consensus 254 ~~~iI~De~y~~~~~~~~~---~~~-~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~----~~~~~~~~s~~~ 324 (456)
|+++|+||+|.+..+.+.. ... +...-+.||||+++ +| +|+||++++ +++++.+.+. ....+++.++++
T Consensus 225 ~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t~sK~l~-~G~~r~G~~~~~-~~i~~~~~~~~~~~~~~~t~~~~~~~ 302 (430)
T 3i4j_A 225 GIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLA-AGYAPLAGLLAA-PQVYETVMGGSGAFMHGFTYAGHPVS 302 (430)
T ss_dssp TCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEEECGGGT-TTSSCCEEEEEC-HHHHHHHHHTTCBCCCCCTTTTCHHH
T ss_pred CCEEEEechhhCCCcccchhhhhhhcCCCCcEEEEccccc-CCccccEEEEEC-HHHHHHHhccCCcccccCCCCCCHHH
Confidence 9999999999965333211 111 22222457999999 69 999999996 9999999874 445678999999
Q ss_pred HHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc
Q 012785 325 QLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ 404 (456)
Q Consensus 325 q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~ 404 (456)
|.++.++|+.+.+ ++++++.++..+..++.+.+.+++++.+...++.| +|+|+.+.+
T Consensus 303 ~aaa~aal~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g--------------~~~~~~~~~ 359 (430)
T 3i4j_A 303 VAAGLSVLDIVER---------EDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTG--------------LLLGVVLGD 359 (430)
T ss_dssp HHHHHHHHHHHHH---------TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEET--------------TEEEEEEC-
T ss_pred HHHHHHHHHHHHc---------ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEE--------------EEEEEEecc
Confidence 9999999985433 24555566666666666666655555444444333 367777642
Q ss_pred -----------cHHHHHHHHHhCCEEeecCCCC--CCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 405 -----------EIEDCESFLKGNKILTRSGKHF--GFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 405 -----------~~~~~~~~l~~~gI~v~pg~~f--g~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
....+.+.|.++||.++|+..+ +.+++++||+++ .++|++++++++|++++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l 425 (430)
T 3i4j_A 360 LATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGAL 425 (430)
T ss_dssp -----------CHHHHHHHHHHTTEECC-----------CEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 1256778888999999998433 335789999987 48999999999999876
No 109
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.96 E-value=9.9e-29 Score=249.83 Aligned_cols=315 Identities=11% Similarity=0.007 Sum_probs=207.0
Q ss_pred CCCCeEEecCCCC--CC-CchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 92 GGERIINVDHGDP--TM-YEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~p--~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
.+...+|+..+.+ ++ ..++.+.+... ..+.........|.+..+ ..+|+++|+++++ | . .+++|++
T Consensus 39 ~g~~~id~~~~~~~~~lg~~~~~v~~a~~-~~~~~~~~~~~~~~~~~~-----~~~l~~~la~~~~--~-~--~~~~v~~ 107 (426)
T 1sff_A 39 EGREYLDFAGGIAVLNTGHLHPKVVAAVE-AQLKKLSHTCFQVLAYEP-----YLELCEIMNQKVP--G-D--FAKKTLL 107 (426)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHH-HHTTTCSCCCTTTEECHH-----HHHHHHHHHHHSS--C-S--SCEEEEE
T ss_pred CCCEEEEcccChhhcccCCCCHHHHHHHH-HHHHhCCCccccccCCHH-----HHHHHHHHHHhCC--c-c--cccEEEE
Confidence 4566889877763 22 12333333211 112211111112333345 4899999999983 2 1 2479999
Q ss_pred ccCHHHHHHHHHH---HhcCCCCCCCcEEEEeCCCCCChhh-hhhhcCCe-------------Eeeecc-----------
Q 012785 169 GTGSTQLFQAALY---ALSSQDASEPISVVSAAPYYSSYPS-ITDCVKSR-------------LYKWAG----------- 220 (456)
Q Consensus 169 t~G~~~al~~~~~---~l~~~gd~~~~~Vlv~~P~y~~~~~-~~~~~g~~-------------~~~~~~----------- 220 (456)
|+|++++++++++ .+.+++ +|++++|+|+++.. .....|.+ ++.++.
T Consensus 108 ~~g~~~a~~~~~~~a~~~~~~~-----~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~ 182 (426)
T 1sff_A 108 VTTGSEAVENAVKIARAATKRS-----GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDD 182 (426)
T ss_dssp ESSHHHHHHHHHHHHHHHHTCC-----EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHH
T ss_pred eCchHHHHHHHHHHHHHhhCCC-----eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHH
Confidence 9999999999988 666664 79999999998764 44544532 332332
Q ss_pred Ccccccc--------CCCeEEEE-cCCCCCCc-ccch--------HHhhhcCcEEEeeecCCCCCCCCC--C-CCCCCcE
Q 012785 221 DAKRFNK--------DGPYIELV-TSPNNPDG-SVRQ--------SVVNRSGGILVHDLAYYWPQYTSI--T-YPADHDL 279 (456)
Q Consensus 221 d~~~l~~--------~~~~~i~v-~~P~NPtG-~~~~--------~l~~~~~~~iI~De~y~~~~~~~~--~-~~~~~~i 279 (456)
|.+.++. .++++|++ ++|+| || .+++ ++|+++|+++|+||+|.+..+.+. . ...+..+
T Consensus 183 d~~~l~~~l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 261 (426)
T 1sff_A 183 AIASIHRIFKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAP 261 (426)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCC
T ss_pred HHHHHHHHHHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCCCC
Confidence 3344431 24566666 45678 99 5554 389999999999999996433221 1 1223334
Q ss_pred EEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHH
Q 012785 280 MLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMST 359 (456)
Q Consensus 280 ~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~ 359 (456)
.+.||||.+|. |+|+||++++ +++++.+.......+++.+++.|.++.++|+.+.++ ...+++++
T Consensus 262 di~s~sK~~~~-GlriG~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~~~-------------~~~~~~~~ 326 (426)
T 1sff_A 262 DLTTFAKSIAG-GFPLAGVTGR-AEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQE-------------NLLQKAND 326 (426)
T ss_dssp SEEEECGGGGT-SSCCEEEEEE-HHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHT-------------THHHHHHH
T ss_pred CEEEEcccccC-CCceEEEEEc-HHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHHhc-------------CHHHHHHH
Confidence 46699999995 9999999997 888887765444467888999999999888754332 23445556
Q ss_pred HHHHHHHHHHhc----CCccccCCCCcccccccccCCCCCceEEeecCc----------cHHHHHHHHHhCCEEeecCCC
Q 012785 360 RWKQLRMAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----------EIEDCESFLKGNKILTRSGKH 425 (456)
Q Consensus 360 ~~~~l~~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----------~~~~~~~~l~~~gI~v~pg~~ 425 (456)
+++.+.+.|+++ +.+...++ .++|+|++++. +...+.+.|.++||.++||..
T Consensus 327 ~~~~l~~~l~~~~~~~~~~~~~~~--------------~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~ 392 (426)
T 1sff_A 327 LGQKLKDGLLAIAEKHPEIGDVRG--------------LGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGP 392 (426)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEEE--------------ETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEEST
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEE--------------EEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCC
Confidence 666666666543 22211222 23489998841 245677778889999999876
Q ss_pred CCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 426 FGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 426 fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
| ++++||+++ .+++++++++++|++++
T Consensus 393 ~---~~~iRi~~~~~~~~~~i~~~~~~l~~~l 421 (426)
T 1sff_A 393 Y---YNVLRILVPLTIEDAQIRQGLEIISQCF 421 (426)
T ss_dssp T---SCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred C---CCEEEEECCccCCHHHHHHHHHHHHHHH
Confidence 4 679999985 48999999999999875
No 110
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.96 E-value=2.1e-27 Score=238.98 Aligned_cols=314 Identities=12% Similarity=0.112 Sum_probs=222.2
Q ss_pred CCCCeEEecCCCCC-CCchhHhhhccccccccc---Ccc-ccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceE
Q 012785 92 GGERIINVDHGDPT-MYEKYWQKVGDKTTIVIP---GWQ-SLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHI 166 (456)
Q Consensus 92 ~~~~~i~l~~g~p~-~~~~~~~~~~~~~~~~~~---~~~-~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I 166 (456)
.++.++||+.+++. +..++.+.++.. ..+.. +.. ....|+.... ..+|+++++++++. +..+
T Consensus 57 ~g~~~ld~~s~~~l~~~~~p~v~~a~~-~~l~~~~~~~~~~~~~~g~~~~-----~~~l~~~la~~~g~-------~~~i 123 (409)
T 3kki_A 57 ASPDDIILQSNDYLALANHPLIKARLA-KSLLEEQQSLFMSASFLQNDYD-----KPMIEKRLAKFTGF-------DECL 123 (409)
T ss_dssp CCTTSEECCCSCTTCCTTCHHHHHHHH-HHHHSCCCCCCSBGGGGCSTTT-----SCHHHHHHHHHHTC-------SEEE
T ss_pred CCCceEEeeccCccCCcCCHHHHHHHH-HHHHHcCCCCCccccccCCcHH-----HHHHHHHHHHHhCC-------CeEE
Confidence 45678999887643 333444443222 11221 110 0112222222 47899999999863 3355
Q ss_pred EEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-Ccccccc----CCCeEEEEcCCCCC
Q 012785 167 VVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-DAKRFNK----DGPYIELVTSPNNP 241 (456)
Q Consensus 167 ~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d~~~l~~----~~~~~i~v~~P~NP 241 (456)
++++| ++++..++.+++++|| .|++++|+|+.+...++..|.+++.++. |.+.++. .+++++++++||||
T Consensus 124 ~~~sG-t~a~~~~l~~~~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~le~~l~~~~~~~vi~~~~~np 198 (409)
T 3kki_A 124 LSQSG-WNANVGLLQTICQPNT----NVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRMLIQRHGPGIIVVDSIYST 198 (409)
T ss_dssp EESCH-HHHHHHHHHHHCCTTC----EEEEETTSCHHHHHHHHHTTCEEEEECTTCHHHHHHHHHHHCSCEEEEESBCTT
T ss_pred Eecch-HHHHHHHHHHhcCCCC----EEEECCCcCHHHHHHHHHcCCeEEEecCCCHHHHHHHHHhcCCeEEEECCCCCC
Confidence 55555 6999999999999999 9999999999999999999999988763 6666543 25789999999999
Q ss_pred Ccccch-----HHhhhcCcEEEeeecCCCCCC--CCCC-----C-CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHH
Q 012785 242 DGSVRQ-----SVVNRSGGILVHDLAYYWPQY--TSIT-----Y-PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKK 308 (456)
Q Consensus 242 tG~~~~-----~l~~~~~~~iI~De~y~~~~~--~~~~-----~-~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~ 308 (456)
||.+++ ++|+++|+++|+||+|.+..+ .+.. . ..+.+|++.||||.++.+| ||++++ +++++.
T Consensus 199 tG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~g---g~v~~~-~~~~~~ 274 (409)
T 3kki_A 199 LGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYRA---GAIWCN-NEVNRC 274 (409)
T ss_dssp TCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEES-SSGGGT
T ss_pred CCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCCc---eEEEEC-HHHHHH
Confidence 999987 489999999999999976222 1110 1 1245799999999999554 999996 778777
Q ss_pred HHHHHhh--ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccc
Q 012785 309 MTKYIEL--NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTF 386 (456)
Q Consensus 309 l~~~~~~--~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~ 386 (456)
+...... ...+.++..+.++.+.++.+ +..+..++.++++++.+.+.|++.+ +.+. .++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~aa~~aal~~~------------~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~--~~~---- 335 (409)
T 3kki_A 275 VPFISYPAIFSSTLLPYEAAGLETTLEII------------ESADNRRQHLDRMARKLRIGLSQLG-LTIR--SES---- 335 (409)
T ss_dssp HHHHCHHHHHSBCCCHHHHHHHHHHHHHH------------HHCHHHHHHHHHHHHHHHHHHHTTT-CCCC--CSS----
T ss_pred HHHhCcCccccCCCcHHHHHHHHHHHHHH------------hcCHHHHHHHHHHHHHHHHHHHHcC-CccC--CCC----
Confidence 7664322 23345666777777777632 1225788889999999999999874 3332 122
Q ss_pred ccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCC--CCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 387 LGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFG--FSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 387 ~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg--~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+++|+.++. +...+.+.|.++||.+.|+..+. .+.+++||+++. +++++++++++|++++
T Consensus 336 ---------~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l 401 (409)
T 3kki_A 336 ---------QIIGLETGDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAV 401 (409)
T ss_dssp ---------SEEEEEEESHHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred ---------CEEEEEeCCHHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 378888754 34567778888899999865432 246799999973 8899999999999876
No 111
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.96 E-value=3.7e-27 Score=235.55 Aligned_cols=278 Identities=10% Similarity=0.049 Sum_probs=204.7
Q ss_pred CHHHHHHHHHHHHHhcCccCCC-ceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh--hhhhhcCCeEeee
Q 012785 142 EPEFAKEVVRLHKVVGNAITEN-HHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP--SITDCVKSRLYKW 218 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~-~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~--~~~~~~g~~~~~~ 218 (456)
..+++++++++++. ++ ++|++|+|+++++.+++.++.++|| +|++++|+|+.+. ..++..|.+++.+
T Consensus 54 ~~~l~~~la~~~g~------~~~~~i~~~~g~t~a~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~g~~~~~v 123 (393)
T 2huf_A 54 MDDIKEGVRYLFQT------NNIATFCLSASGHGGMEATLCNLLEDGD----VILIGHTGHWGDRSADMATRYGADVRVV 123 (393)
T ss_dssp HHHHHHHHHHHHTC------CCSEEEEESSCHHHHHHHHHHHHCCTTC----EEEEEESSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHhCC------CCCcEEEEcCcHHHHHHHHHHHHhCCCC----EEEEECCCcchHHHHHHHHHcCCeeEEE
Confidence 47899999998864 33 3899999999999999999999999 9999999998743 3456679988877
Q ss_pred cc------Ccccccc---C-CCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEe
Q 012785 219 AG------DAKRFNK---D-GPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLF 282 (456)
Q Consensus 219 ~~------d~~~l~~---~-~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~ 282 (456)
+. |.+.++. . ++++|++++||||||.+++ ++|+++|+++|+|+++.... .++. ...+.+++++
T Consensus 124 ~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~-~~~~~~~~~~d~~~~ 202 (393)
T 2huf_A 124 KSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGG-APMFMDRWEIDAMYT 202 (393)
T ss_dssp ECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTT-BCCCTTTTTCSEEEC
T ss_pred eCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCC-CCcchhhcCccEEEE
Confidence 64 3444432 2 6789999999999999987 48999999999999987422 1221 2335789999
Q ss_pred cCccc-cCCCCceEEEEEEeCHHHHHHHHHHH----h------------------hcc-CcCChHHHHHHHHHHHhhhCC
Q 012785 283 TVSKS-TGHAGTRIGWALVKDMEVAKKMTKYI----E------------------LNT-IGVSKDSQLRAAKVLKVVSDS 338 (456)
Q Consensus 283 S~SK~-~g~~G~RiG~l~~~~~~~~~~l~~~~----~------------------~~~-~~~s~~~q~~a~~~L~~~~~~ 338 (456)
|+||. +|++|+ ||++++ +++++.+.... . ... .+.+...+.++.++++.+.
T Consensus 203 s~sK~l~g~~G~--G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-- 277 (393)
T 2huf_A 203 GSQKVLGAPPGI--TPVSFS-HRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMAC-- 277 (393)
T ss_dssp CSSSTTCCCSSC--EEEEEC-HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHH--
T ss_pred CCCcccccCCCe--EEEEEC-HHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHH--
Confidence 99997 567887 999996 98988887541 0 001 2345566666666776321
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHH-h
Q 012785 339 CKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLK-G 415 (456)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~-~ 415 (456)
+..+++.+++++++++.+.+.|+++ ++.+..+.+.. .+.++|++++. +.+.+.+.|. +
T Consensus 278 --------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~L~~~ 338 (393)
T 2huf_A 278 --------EEGLPALIARHEDCAKRLYRGLQDA-GFELYADPKDR----------LSTVTTIKVPQGVDWLKAAQYAMKT 338 (393)
T ss_dssp --------HHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGB----------CTTEEEEECCTTCCHHHHHHHHHHH
T ss_pred --------HhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccc----------CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 1236778889999999999999987 45554432210 11267788752 4566766665 4
Q ss_pred CCEEeecCCCCCCCCCeEEEEe-c--CChhHHHHHHHHHHhhh
Q 012785 416 NKILTRSGKHFGFSPKYVRISM-L--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 416 ~gI~v~pg~~fg~~~~~iRis~-~--~~~e~i~~~l~~L~~~l 455 (456)
+||.+++|..|. .++++||++ . .+++++++++++|++++
T Consensus 339 ~gi~v~~g~~~~-~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~ 380 (393)
T 2huf_A 339 YLVEISGGLGPT-AGQVFRIGLMGQNATTERVDRVLQVFQEAV 380 (393)
T ss_dssp HCEECBCCCGGG-TTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred CCEEEecCcccc-cCCEEEEEcccCcCCHHHHHHHHHHHHHHH
Confidence 699999998764 378999999 5 36788999999999875
No 112
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.96 E-value=4.1e-28 Score=241.24 Aligned_cols=276 Identities=14% Similarity=0.109 Sum_probs=204.3
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc----CCCCCCCcEEEEeCCCCCChhhhhhh---cCCe
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS----SQDASEPISVVSAAPYYSSYPSITDC---VKSR 214 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~----~~gd~~~~~Vlv~~P~y~~~~~~~~~---~g~~ 214 (456)
..+++++++++++. ++++|++|+|+++++.+++.++. ++|| +|++++|+|+.+...+.. .|++
T Consensus 45 ~~~l~~~la~~~g~------~~~~v~~~~g~t~a~~~~~~~l~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~~~~g~~ 114 (382)
T 4eb5_A 45 VQEAREKVAKLVNG------GGGTVVFTSGATEANNLAIIGYAMRNARKGK----HILVSAVEHMSVINPAKFLQKQGFE 114 (382)
T ss_dssp HHHHHHHHHHHHTC------TTEEEEEESSHHHHHHHHHHHHHHHHGGGCC----EEEEETTCCHHHHHHHHHHTTTTCE
T ss_pred HHHHHHHHHHHhCC------CCCeEEEcCchHHHHHHHHHHHHhhccCCCC----EEEECCCcchHHHHHHHHHHhCCcE
Confidence 47888888888863 35799999999999999999998 8999 999999999988766653 6888
Q ss_pred EeeeccC------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcE
Q 012785 215 LYKWAGD------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDL 279 (456)
Q Consensus 215 ~~~~~~d------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i 279 (456)
++.++.| .+.++. .++++|++++|+||||.+++ ++|+++|++ |+|++|.... .++. ...+.++
T Consensus 115 ~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~-~~~~~~~~~~di 192 (382)
T 4eb5_A 115 VEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQ-IEVDVEKIGADM 192 (382)
T ss_dssp EEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTT-BCCCHHHHTCSE
T ss_pred EEEeccCCCCccCHHHHHHHhcCCCeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCC-cccCccccCCCE
Confidence 8877754 344432 35789999999999999987 489999999 9999998321 2221 1125689
Q ss_pred EEecCccccCCCCceEEEEEEeCHHHHHHHHHH-------HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHH
Q 012785 280 MLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKY-------IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEF 352 (456)
Q Consensus 280 ~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~-------~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~ 352 (456)
+++|+||.+|.+| +||++++ ++. .+... ......+.+...+.++.++++.+ ++.+++
T Consensus 193 ~~~s~sK~~g~~g--~G~~~~~-~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-----------~~~~~~ 256 (382)
T 4eb5_A 193 LTISSNDIYGPKG--VGALWIR-KEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEIT-----------AMEWRE 256 (382)
T ss_dssp EEEETGGGTCCSS--CEEEEEE-TTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH-----------HHHHHH
T ss_pred EEeehHHhcCCCc--eEEEEEc-ccc--ccCceecCCCccccccCCCccHHHHHHHHHHHHHH-----------HHhHHH
Confidence 9999999988667 7999998 432 11111 11223445666666666666632 345778
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCC---
Q 012785 353 TNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGF--- 428 (456)
Q Consensus 353 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~--- 428 (456)
.+++++++++.+.+.|++++++.+..+.+.. .++++++.+++ +.+.+.+.|.++||.+++|..|..
T Consensus 257 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~ 326 (382)
T 4eb5_A 257 EAERLRRLRDRIIDNVLKIEESYLNGHPEKR----------LPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTL 326 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTEEECSCSSSB----------CTTEEEEEETTSCHHHHHHHHHHHTCBCBCCCGGGTSSC
T ss_pred HHHHHHHHHHHHHHHHhhCCCeEEeCCcccC----------CCCEEEEEeCCcCHHHHHHHHHHCCEEEeccccccCCCC
Confidence 8999999999999999887556555443210 13367777753 566778888899999999986532
Q ss_pred ---------------CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 429 ---------------SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 429 ---------------~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
.++++||++.. +++++++++++|++++
T Consensus 327 ~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 370 (382)
T 4eb5_A 327 QPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVI 370 (382)
T ss_dssp CCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 25799999973 8999999999998875
No 113
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.96 E-value=1.8e-27 Score=238.87 Aligned_cols=266 Identities=17% Similarity=0.152 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC-------CC-CCCCcEEEEeCCCCCChhhhhhhcCC-
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS-------QD-ASEPISVVSAAPYYSSYPSITDCVKS- 213 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~-------~g-d~~~~~Vlv~~P~y~~~~~~~~~~g~- 213 (456)
.++++.++++++ .++|++|+|+++++.++++++.. +| | +|++++|+|+.+...+...+.
T Consensus 84 ~~l~~~la~~~~--------~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~----~vi~~~~~y~~~~~~~~~~~~~ 151 (406)
T 4adb_A 84 LRLAKKLIDATF--------ADRVFFCNSGAEANEAALKLARKFAHDRYGSHKS----GIVAFKNAFHGRTLFTVSAGGQ 151 (406)
T ss_dssp HHHHHHHHHHSS--------CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCC----EEEEETTCCCCSSHHHHHHSSC
T ss_pred HHHHHHHHhhCC--------CCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCc----EEEEECCCcCCCcHHHhhccCC
Confidence 566666666652 35999999999999999998864 55 7 999999999999766665543
Q ss_pred ------------eEeeec-cCcccccc---CCCeEEEEcCCCCCCcccc--h--------HHhhhcCcEEEeeecCCCCC
Q 012785 214 ------------RLYKWA-GDAKRFNK---DGPYIELVTSPNNPDGSVR--Q--------SVVNRSGGILVHDLAYYWPQ 267 (456)
Q Consensus 214 ------------~~~~~~-~d~~~l~~---~~~~~i~v~~P~NPtG~~~--~--------~l~~~~~~~iI~De~y~~~~ 267 (456)
++..++ .|.+.++. .++++++++ |+||||.++ + ++|+++|+++|+||+|.+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~ 230 (406)
T 4adb_A 152 PAYSQDFAPLPADIRHAAYNDINSASALIDDSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVG 230 (406)
T ss_dssp GGGTGGGCSCCSSEEEECTTCHHHHHTTCSTTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred ccccccCCCCCCCceEeCCCcHHHHHHHhcCCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 222232 25565554 367888887 999999976 3 37999999999999998643
Q ss_pred CCCCC-----CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCC
Q 012785 268 YTSIT-----YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPS 342 (456)
Q Consensus 268 ~~~~~-----~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~ 342 (456)
+.+.. .....+++ ||||.++ +|+|+||++++ +++++.+.......+++.+++.|.++.+.|+.+.
T Consensus 231 ~~g~~~~~~~~~~~~d~~--t~sK~~~-~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------ 300 (406)
T 4adb_A 231 RTGELYAYMHYGVTPDLL--TTAKALG-GGFPVGALLAT-EECARVMTVGTHGTTYGGNPLASAVAGKVLELIN------ 300 (406)
T ss_dssp TTSSSSHHHHHTCCCSEE--EECGGGG-TTSCCEEEEEC-HHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHS------
T ss_pred ccchhHHHHhcCCCCCEE--Eechhhc-CCCCeEEEEEc-HHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHH------
Confidence 33211 01112222 7899999 99999999996 9998888776666788999999999999988431
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhcCC-cc-ccCCCCcccccccccCCCCCceEEeecCc----cHHHHHHHHHhC
Q 012785 343 GSEDECFFEFTNHQMSTRWKQLRMAVQKSGL-FS-VPELPSQFCTFLGRAFEPQPAFAWLKCEQ----EIEDCESFLKGN 416 (456)
Q Consensus 343 ~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~~-~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~~~ 416 (456)
+ ++.+++++++++.+.+.|++... +. +... ...++++|+.++. +...+.+.|.++
T Consensus 301 -----~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~------------~~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 361 (406)
T 4adb_A 301 -----T--PEMLNGVKQRHDWFVERLNTINHRYGLFSEV------------RGLGLLIGCVLNADYAGQAKQISQEAAKA 361 (406)
T ss_dssp -----S--HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE------------EEETTEEEEEECTTTTTCHHHHHHHHHHT
T ss_pred -----h--cCHHHHHHHHHHHHHHHHHHHHHhCCCceEE------------EEEEEEEEEEEeCCcHHHHHHHHHHHHHC
Confidence 1 45677788888888888876421 10 1101 1123378888865 467788888889
Q ss_pred CEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 417 KILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 417 gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
||.++|+. ++++|++ +..+++++++++++|++++
T Consensus 362 gi~v~~~~-----~~~iRi~~~~~~~~e~i~~~~~~l~~~l 397 (406)
T 4adb_A 362 GVMVLIAG-----GNVVRFAPALNVSEEEVTTGLDRFAAAC 397 (406)
T ss_dssp TEECEESS-----TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CcEEeecC-----CCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 99999953 7899995 4458999999999999876
No 114
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=7.9e-28 Score=239.99 Aligned_cols=273 Identities=13% Similarity=0.056 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHH-hcCccCCCceEEEccCHHHHHHHHHHHhcCC-------------CCCCCcEEEEeCCCCCChhhhh
Q 012785 143 PEFAKEVVRLHKV-VGNAITENHHIVVGTGSTQLFQAALYALSSQ-------------DASEPISVVSAAPYYSSYPSIT 208 (456)
Q Consensus 143 ~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~-------------gd~~~~~Vlv~~P~y~~~~~~~ 208 (456)
.++++.+++++.. .|. ++++|++|+|+++++.+++.++..+ || +|++++|+|+.+...+
T Consensus 68 ~~~~~~l~~~la~~~~~---~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~ 140 (397)
T 3f9t_A 68 KLLEEKAVALLGSLLNN---KDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHP----KIIVPITAHFSFEKGR 140 (397)
T ss_dssp HHHHHHHHHHHHHHTTC---TTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSC----EEEEETTCCTHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC---CCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCe----EEEECCcchhHHHHHH
Confidence 4555555554432 222 3578999999999999999999776 88 9999999999999999
Q ss_pred hhcCCeEeeeccC------cccccc---C-CCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC--C--
Q 012785 209 DCVKSRLYKWAGD------AKRFNK---D-GPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY--T-- 269 (456)
Q Consensus 209 ~~~g~~~~~~~~d------~~~l~~---~-~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~--~-- 269 (456)
+..|.+++.++.| .+.++. . +++++++++|+||||.+.+ ++|+++|+++|+||+|.+... .
T Consensus 141 ~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~ 220 (397)
T 3f9t_A 141 EMMDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDD 220 (397)
T ss_dssp HHHTCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCG
T ss_pred HHcCceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhccc
Confidence 9999999887764 344432 2 6789999999999999977 489999999999999974211 0
Q ss_pred ---------CCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhcc-----------CcCChHHHHHH
Q 012785 270 ---------SIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNT-----------IGVSKDSQLRA 328 (456)
Q Consensus 270 ---------~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~-----------~~~s~~~q~~a 328 (456)
++. .. +.++++.|++|.++ +|.|+||++++++.+.+.+........ .+.+...+.++
T Consensus 221 ~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 298 (397)
T 3f9t_A 221 KYKKKGVNYKFDFSL-GVDSITIDPHKMGH-CPIPSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAV 298 (397)
T ss_dssp GGCCTTCCCCCSGGG-TCSEEECCTTTTTC-CCSSCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHH
T ss_pred ccccccccccccccc-cCCeEEEccccccC-CCCCceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHH
Confidence 111 12 56799999999776 888999999976656554432221111 12355666666
Q ss_pred HHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHH
Q 012785 329 AKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIED 408 (456)
Q Consensus 329 ~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~ 408 (456)
.+.+. ...+++..++++++++.+.+.|+++ ++.+..+. .++++|+.++. .+.
T Consensus 299 ~~~~~-------------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-------------~~~~~~~~~~~-~~~ 350 (397)
T 3f9t_A 299 LRYLG-------------REGQRKIVNECMENTLYLYKKLKEN-NFKPVIEP-------------ILNIVAIEDED-YKE 350 (397)
T ss_dssp HHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCC-------------SSSEEEEECTT-HHH
T ss_pred HHHHh-------------HHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEcCC-------------CccEEEEEeCC-HHH
Confidence 66665 4566778888889999999999987 34433222 23378888764 567
Q ss_pred HHHHHHhCCEEeecCCCCCCCCCeEEEEecC--ChhHHHHHHHHHHhhhC
Q 012785 409 CESFLKGNKILTRSGKHFGFSPKYVRISMLD--RDENYNLFVQRLSKILS 456 (456)
Q Consensus 409 ~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~~l~ 456 (456)
+.+.|.++||.+++|.. ++++||++.. +++++++++++|+++++
T Consensus 351 ~~~~l~~~gi~v~~~~~----~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 351 VCKKLRDRGIYVSVCNC----VKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp HHHHHHHTTCBCEECSS----SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhCCeEEeccCC----CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 78888889999999763 6899999973 89999999999998864
No 115
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.95 E-value=9.1e-28 Score=235.85 Aligned_cols=275 Identities=9% Similarity=0.021 Sum_probs=203.5
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCCh--hhhhhhcCCeEeeec
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSY--PSITDCVKSRLYKWA 219 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~--~~~~~~~g~~~~~~~ 219 (456)
..+++++++++++. .. ++++|++|+|+++++.++++++.+ | +|++++|+|+.+ ...++..|.+++.++
T Consensus 35 ~~~l~~~la~~~g~---~~-~~~~v~~t~g~t~a~~~~~~~~~~--d----~vl~~~~~~~~~~~~~~~~~~g~~~~~v~ 104 (353)
T 2yrr_A 35 NRAIQERLAALFDP---GE-GALVAALAGSGSLGMEAGLANLDR--G----PVLVLVNGAFSQRVAEMAALHGLDPEVLD 104 (353)
T ss_dssp HHHHHHHHHHHHCC---CT-TCEEEEESSCHHHHHHHHHHTCSC--C----CEEEEECSHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHhCC---CC-CCceEEEcCCcHHHHHHHHHHhcC--C----cEEEEcCCCchHHHHHHHHHcCCceEEEe
Confidence 47888989988753 21 257899999999999999998876 6 899999998875 455677899988777
Q ss_pred cC------cccccc---C-CCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEec
Q 012785 220 GD------AKRFNK---D-GPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLFT 283 (456)
Q Consensus 220 ~d------~~~l~~---~-~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~S 283 (456)
.| .+.++. . +++++++++|+||||.+++ ++|+++|+++|+||+|.... .+.. ...+.++++.|
T Consensus 105 ~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~-~~~~~~~~~~d~~~~s 183 (353)
T 2yrr_A 105 FPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGM-LPFSMRAMGVDYAFTG 183 (353)
T ss_dssp CCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTT-SCCCHHHHTCSEEECC
T ss_pred CCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCccccc-ccccccccCceEEEec
Confidence 54 334432 2 6789999999999999987 48999999999999996322 2221 11245799999
Q ss_pred Ccccc-CCCCceEEEEEEeCHHHHHHHHH-------------H--HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcch
Q 012785 284 VSKST-GHAGTRIGWALVKDMEVAKKMTK-------------Y--IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDE 347 (456)
Q Consensus 284 ~SK~~-g~~G~RiG~l~~~~~~~~~~l~~-------------~--~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~ 347 (456)
++|.+ |.+| +||++++ ++++++++. . ......+.+...+.++.++++.+. +
T Consensus 184 ~~K~~~~~~g--~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~----------~ 250 (353)
T 2yrr_A 184 SQKCLSAPPG--LAPIAAS-LEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVL----------E 250 (353)
T ss_dssp TTSTTCCCSS--CEEEEEC-HHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHH----------H
T ss_pred CcccccCCCc--eEEEEEC-HHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHH----------H
Confidence 99955 5566 6999997 888776641 1 112234567777777777776321 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC--CcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecC
Q 012785 348 CFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELP--SQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSG 423 (456)
Q Consensus 348 ~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg 423 (456)
..+++.+++++++++.+.+.|++. ++.+..+. +++ ++|++++. +.+.+.+.|.++||.+++|
T Consensus 251 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~gi~v~~g 316 (353)
T 2yrr_A 251 EGVAARERRAREVYAWVLEELKAR-GFRPYPKASPLPT-------------VLVVRPPEGVDADRLVRALYAEGVAVAGG 316 (353)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSSBCTT-------------EEEEECCTTCCHHHHHHHHHHTTEECEEC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHC-CCccccCccCCCe-------------EEEEECCCCCCHHHHHHHHHHCCEEEeCC
Confidence 236788999999999999999887 45554432 222 56788752 5677888888899999999
Q ss_pred CCCCCCCCeEEEEec--CChhHHH-HHHHHHHhhh
Q 012785 424 KHFGFSPKYVRISML--DRDENYN-LFVQRLSKIL 455 (456)
Q Consensus 424 ~~fg~~~~~iRis~~--~~~e~i~-~~l~~L~~~l 455 (456)
..|.. ++++|+++. .++++++ +++++|++++
T Consensus 317 ~~~~~-~~~iRi~~~~~~~~~~~~~~~~~~l~~~l 350 (353)
T 2yrr_A 317 IGPTR-GQVLRLGLMGEGARREAYQAFLKALDRAL 350 (353)
T ss_dssp CGGGT-TTCEEEECSGGGSCHHHHHHHHHHHHHHH
T ss_pred ccccC-CCeEEEecCccCCHHHHHHHHHHHHHHHH
Confidence 87753 689999984 3788888 9999999876
No 116
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.95 E-value=2.7e-27 Score=237.12 Aligned_cols=259 Identities=12% Similarity=0.058 Sum_probs=187.1
Q ss_pred CceEEEccCHHHHHHHHHHHhc-------CCCCCCCcEEEEeCCCCCChhhhhhhcCC-------------eEeeecc-C
Q 012785 163 NHHIVVGTGSTQLFQAALYALS-------SQDASEPISVVSAAPYYSSYPSITDCVKS-------------RLYKWAG-D 221 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~-------~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~-------------~~~~~~~-d 221 (456)
.++|++|+|+++++..+++++. .+++ +|++.+|+|+++...+...+. ++..++. |
T Consensus 93 ~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~----~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 168 (395)
T 3nx3_A 93 LERVFFTNSGTESIEGAMKTARKYAFNKGVKGG----QFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYND 168 (395)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTC----EEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTTC
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCC----EEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCCC
Confidence 4699999999999999998875 3467 999999999988755544432 3333332 5
Q ss_pred cccccc---CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC---CCCCCcEEEecCcc
Q 012785 222 AKRFNK---DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT---YPADHDLMLFTVSK 286 (456)
Q Consensus 222 ~~~l~~---~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~---~~~~~~i~i~S~SK 286 (456)
.+.++. .++++++++.++||+|...+ ++|+++|+++|+||+|.+....+.. ...+....+.||||
T Consensus 169 ~~~l~~~l~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t~sK 248 (395)
T 3nx3_A 169 ISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIMTSAK 248 (395)
T ss_dssp HHHHHTTCCTTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECG
T ss_pred HHHHHHhccCCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEEEecc
Confidence 565554 35678888777888888743 3789999999999999865333211 11222333568999
Q ss_pred ccCCCCceEEEEEEeCHHH-HHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 287 STGHAGTRIGWALVKDMEV-AKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 287 ~~g~~G~RiG~l~~~~~~~-~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
.++ +|+|+||++++ +++ ++.+.......+++.++++|.++.++|+.+.+ ++++++.++..+..++.+.
T Consensus 249 ~~~-~G~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~---------~~~~~~~~~~~~~~~~~l~ 317 (395)
T 3nx3_A 249 ALG-CGLSVGAFVIN-QKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKE---------EKILENVNKLTPYLEQSLD 317 (395)
T ss_dssp GGT-TTSCCEEEEEC-HHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHH---------TTHHHHHHHHHHHHHHHHH
T ss_pred ccc-CCCceEEEEEc-hhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHHHHHHHH
Confidence 999 69999999997 888 88876665556888999999999999985432 2455555555555556666
Q ss_pred HHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec--CCh
Q 012785 366 MAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGFSPKYVRISML--DRD 441 (456)
Q Consensus 366 ~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~--~~~ 441 (456)
+.+..++.+...++ .++|+|+.++. +...+.+.|.++||.++|+. ++++||+++ .++
T Consensus 318 ~~~~~~~~~~~~~~--------------~g~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----~~~iRi~~~~~~t~ 378 (395)
T 3nx3_A 318 ELINEFDFCKKRKG--------------LGFMQGLSLDKSVKVAKVIQKCQENALLLISCG-----ENDLRFLPPLILQK 378 (395)
T ss_dssp HHHHHCTTEEEEEE--------------ETTEEEEEECTTSCHHHHHHHHHHTTEECEEET-----TTEEEECCCTTCCH
T ss_pred HHHHhCCCeEEEEe--------------EEEEEEEEeCCcchHHHHHHHHHHCCCEEecCC-----CCEEEEECCCCCCH
Confidence 65555543332222 23478888865 56778888899999999963 789999854 489
Q ss_pred hHHHHHHHHHHhhh
Q 012785 442 ENYNLFVQRLSKIL 455 (456)
Q Consensus 442 e~i~~~l~~L~~~l 455 (456)
+++++++++|++++
T Consensus 379 e~i~~~l~~l~~~l 392 (395)
T 3nx3_A 379 EHIDEMSEKLRKAL 392 (395)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999876
No 117
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.95 E-value=2.2e-27 Score=235.56 Aligned_cols=275 Identities=15% Similarity=0.120 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc----CCCCCCCcEEEEeCCCCCChhhhhhh---cCCeE
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS----SQDASEPISVVSAAPYYSSYPSITDC---VKSRL 215 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~----~~gd~~~~~Vlv~~P~y~~~~~~~~~---~g~~~ 215 (456)
.+++++++++++. ++++|++|+|+++++.++++++. ++|| +|++++|+|+.+...+.. .|+++
T Consensus 46 ~~~~~~la~~~~~------~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd----~vi~~~~~~~~~~~~~~~~~~~g~~~ 115 (382)
T 4hvk_A 46 QEAREKVAKLVNG------GGGTVVFTSGATEANNLAIIGYAMRNARKGK----HILVSAVEHMSVINPAKFLQKQGFEV 115 (382)
T ss_dssp HHHHHHHHHHTTC------TTEEEEEESSHHHHHHHHHHHHHHHHGGGCC----EEEEETTCCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCC------CcCeEEEECCchHHHHHHHHHhhhhhcCCCC----EEEECCCCcHHHHHHHHHHHhcCCEE
Confidence 4677777777653 45789999999999999999998 8999 999999999988876655 58898
Q ss_pred eeeccC------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEE
Q 012785 216 YKWAGD------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLM 280 (456)
Q Consensus 216 ~~~~~d------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~ 280 (456)
+.++.| .+.++. .+++++++++||||||.+++ ++|+++|+ +|+|++|..... +.. ...+.+++
T Consensus 116 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~-~~~~~~~~~d~~ 193 (382)
T 4hvk_A 116 EYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQI-EVDVEKIGADML 193 (382)
T ss_dssp EEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTB-CCCHHHHTCSEE
T ss_pred EEeccCCCCCcCHHHHHHHhccCceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCC-CCCchhcCCCEE
Confidence 877754 344432 36789999999999999987 48999999 999999874321 111 12246799
Q ss_pred EecCccccCCCCceEEEEEEeCHHHHHHHHHHH-------hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHH
Q 012785 281 LFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI-------ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFT 353 (456)
Q Consensus 281 i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~-------~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~ 353 (456)
++|+||.+|.+| +|+++++ ++. .+.... .......+...+.++.+.++. .++++++.
T Consensus 194 ~~s~~K~~g~~g--~g~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-----------~~~~~~~~ 257 (382)
T 4hvk_A 194 TISSNDIYGPKG--VGALWIR-KEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEI-----------TAMEWREE 257 (382)
T ss_dssp EEESGGGTSCTT--CEEEEEE-TTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH-----------HHHHHHHH
T ss_pred EEeHHHhcCCCc--eEEEEEc-Ccc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHH-----------HHhhHHHH
Confidence 999999888666 7787776 332 121111 111334466777777676662 24577889
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCCC---
Q 012785 354 NHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGFS--- 429 (456)
Q Consensus 354 ~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~~--- 429 (456)
+++++++++.+.+.|++++++.+..+.+.. .++++++.++. +.+.+.+.|.++||.+++|..|+..
T Consensus 258 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~ 327 (382)
T 4hvk_A 258 AERLRRLRDRIIDNVLKIEESYLNGHPEKR----------LPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQ 327 (382)
T ss_dssp HHHHHHHHHHHHHHHTTSTTEEECSCSSSB----------CTTEEEEEETTCCHHHHHHHHHHTTCBCBCC--------C
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEeCCcccc----------CCCEEEEEECCCCHHHHHHHHHHCCEEEeeCCccCCCCCc
Confidence 999999999999999987666665544321 12256666654 5677888899999999999877532
Q ss_pred ---------------CCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 430 ---------------PKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 430 ---------------~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
++++||++.. ++|++++++++|++++
T Consensus 328 ~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~ 370 (382)
T 4hvk_A 328 PSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVI 370 (382)
T ss_dssp CCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred chHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 5899999974 7899999999999875
No 118
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.95 E-value=1.4e-26 Score=230.99 Aligned_cols=281 Identities=14% Similarity=0.128 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC--hhhhhhhcCCeEeeecc
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS--YPSITDCVKSRLYKWAG 220 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~--~~~~~~~~g~~~~~~~~ 220 (456)
.+++++++++++. .++++|++|+|+++++..+++++.++|| +|+++.|+|.. +...++..|.+++.++.
T Consensus 59 ~~l~~~la~~~~~-----~~~~~v~~~~gg~~al~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~ 129 (393)
T 3kgw_A 59 EEIKQGIQYVFQT-----RNPLTLVVSGSGHCAMETALFNLLEPGD----SFLTGTNGIWGMRAAEIADRIGARVHQMIK 129 (393)
T ss_dssp HHHHHHHHHHHTC-----CCSEEEEESCCTTTHHHHHHHHHCCTTC----EEEEEESSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHhCC-----CCCcEEEEeCCcHHHHHHHHHhcCCCCC----EEEEEeCCchhHHHHHHHHHcCCceEEEeC
Confidence 5777888877753 1234699999999999999999999999 99999988853 36677788999887764
Q ss_pred C------cccccc---C-CCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCc
Q 012785 221 D------AKRFNK---D-GPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVS 285 (456)
Q Consensus 221 d------~~~l~~---~-~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~S 285 (456)
+ .+.++. . +++++++++||||||.+++ ++|+++|+++|+||+|.......-....+.++++.|+|
T Consensus 130 ~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~s 209 (393)
T 3kgw_A 130 KPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQ 209 (393)
T ss_dssp CTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESS
T ss_pred CCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcccchhhcCCCEEEecCc
Confidence 3 344432 2 7889999999999999987 48999999999999987322111112345689999999
Q ss_pred cccCCCCceEEEEEEeCHHHHHHHHHHHh-----------------------hccCcCChHHHHHHHHHHHhhhCCCCCC
Q 012785 286 KSTGHAGTRIGWALVKDMEVAKKMTKYIE-----------------------LNTIGVSKDSQLRAAKVLKVVSDSCKPS 342 (456)
Q Consensus 286 K~~g~~G~RiG~l~~~~~~~~~~l~~~~~-----------------------~~~~~~s~~~q~~a~~~L~~~~~~~~~~ 342 (456)
|.++ ++.++||++++ +++++.+..... ....+.+...+.++.+.++.+.
T Consensus 210 K~~~-~~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~------ 281 (393)
T 3kgw_A 210 KVLN-APPGISLISFN-DKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIA------ 281 (393)
T ss_dssp STTC-CCSSCEEEEEC-HHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHH------
T ss_pred cccc-CCCceeEEEEC-HHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHH------
Confidence 9774 33448999996 888888865321 1124557777777777766321
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhC-CEE
Q 012785 343 GSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGN-KIL 419 (456)
Q Consensus 343 ~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~-gI~ 419 (456)
+..+++.+++++++++.+.+.|++++ +.+..+.+.. ..+.++|+.++. +.+.+.+.|.++ ||.
T Consensus 282 ----~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~ 347 (393)
T 3kgw_A 282 ----EQGLENCWRRHREATAHLHKHLQEMG-LKFFVKDPEI---------RLPTITTVTVPAGYNWRDIVSYVLDHFSIE 347 (393)
T ss_dssp ----HHCHHHHHHHHHHHHHHHHHHHHHTT-CCBSSSSGGG---------BCSSEEEEECCTTBCHHHHHHHHHHHHCEE
T ss_pred ----HhhHHHHHHHHHHHHHHHHHHHHHcC-CeeccCChhh---------cCCeEEEEeCCCCCCHHHHHHHHHHhCCEE
Confidence 33478889999999999999999873 5544333211 112256788753 456677777665 999
Q ss_pred eecCCCCCCCCCeEEEEe-c--CChhHHHHHHHHHHhhh
Q 012785 420 TRSGKHFGFSPKYVRISM-L--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 420 v~pg~~fg~~~~~iRis~-~--~~~e~i~~~l~~L~~~l 455 (456)
+++|..+. .++++||++ + .+++++++++++|++++
T Consensus 348 v~~g~~~~-~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l 385 (393)
T 3kgw_A 348 ISGGLGPT-EERVLRIGLLGYNATTENVDRVAEALREAL 385 (393)
T ss_dssp CBCCCGGG-TTTEEEEECCGGGCCHHHHHHHHHHHHHHH
T ss_pred EeCCcccC-CCCEEEEEecccCCCHHHHHHHHHHHHHHH
Confidence 99988653 478999998 5 38999999999999876
No 119
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.95 E-value=8.1e-28 Score=241.04 Aligned_cols=267 Identities=14% Similarity=0.104 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC------C-CCCCCcEEEEeCCCCCChhh-hhhhcCCe
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS------Q-DASEPISVVSAAPYYSSYPS-ITDCVKSR 214 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~------~-gd~~~~~Vlv~~P~y~~~~~-~~~~~g~~ 214 (456)
.++++.++++++ .++|++|+|+++++.++++++.. + ++ +|++.+|+|++... .++..|.+
T Consensus 85 ~~l~~~la~~~g--------~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~----~vi~~~~~yh~~~~~~~~~~g~~ 152 (397)
T 2ord_A 85 MELAELLSKNTF--------GGKVFFANTGTEANEAAIKIARKYGKKKSEKKY----RILSAHNSFHGRTLGSLTATGQP 152 (397)
T ss_dssp HHHHHHHHHTTT--------SCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCC----EEEEEBTCCCCSSHHHHHHSBCH
T ss_pred HHHHHHHHHhcC--------CCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCc----eEEEEcCCcCCCchhhhhccCCh
Confidence 566666666552 36899999999999999998863 4 45 89999999987554 66667765
Q ss_pred ------------Eeeecc-Ccccccc---CCCeEEEEcCCCCCCcc-cch--------HHhhhcCcEEEeeecCCCCCCC
Q 012785 215 ------------LYKWAG-DAKRFNK---DGPYIELVTSPNNPDGS-VRQ--------SVVNRSGGILVHDLAYYWPQYT 269 (456)
Q Consensus 215 ------------~~~~~~-d~~~l~~---~~~~~i~v~~P~NPtG~-~~~--------~l~~~~~~~iI~De~y~~~~~~ 269 (456)
++.++. |.+.++. .++++|++++||||||. +++ ++|+++|+++|+||+|.+..+.
T Consensus 153 ~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~ 232 (397)
T 2ord_A 153 KYQKPFEPLVPGFEYFEFNNVEDLRRKMSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRT 232 (397)
T ss_dssp HHHGGGCSCCTTEEEECTTCHHHHHHHCCTTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred hhccccCCCCCCeeEecCCCHHHHHHHhhcCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccC
Confidence 555543 5555543 36799999999999999 665 2789999999999999864332
Q ss_pred C--CC-C--CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCC
Q 012785 270 S--IT-Y--PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGS 344 (456)
Q Consensus 270 ~--~~-~--~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~ 344 (456)
+ .. . ....++ .||||.++ +|+|+||++++ ++++ .+.......+++.+++.|.++.+.|+.+.+
T Consensus 233 g~~~~~~~~~~~~d~--~s~sK~~~-~G~r~G~~~~~-~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~------- 300 (397)
T 2ord_A 233 GKLFAYQKYGVVPDV--LTTAKGLG-GGVPIGAVIVN-ERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTK------- 300 (397)
T ss_dssp SSSSHHHHHTCCCSE--EEECGGGG-TTSCCEEEEEC-STTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTS-------
T ss_pred ccchhhhhhCCCCCe--eeeccccC-CCcCeEEEEEc-hHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHh-------
Confidence 2 11 0 111123 38899999 99999999997 5665 554333345778899999999999885322
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcC-CccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEee
Q 012785 345 EDECFFEFTNHQMSTRWKQLRMAVQKSG-LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTR 421 (456)
Q Consensus 345 ~~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~ 421 (456)
++.+++++++++.+.+.|++.+ .+.... ..++.++|+|++++. +...+.+.|.++||.++
T Consensus 301 ------~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-----------~~~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~ 363 (397)
T 2ord_A 301 ------EGFLEEVEEKGNYLMKKLQEMKEEYDVVA-----------DVRGMGLMIGIQFREEVSNREVATKCFENKLLVV 363 (397)
T ss_dssp ------TTHHHHHHHHHHHHHHHHHHHHHHCTTEE-----------EEEEETTEEEEEECTTSCHHHHHHHHHHTTEECE
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHhCCceE-----------EEEEEeEEEEEEECChHHHHHHHHHHHHCCCEEc
Confidence 2467778888888888887642 111100 001223478888864 36678888888999999
Q ss_pred cCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 422 SGKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 422 pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
||. ++++||+++ .+++++++++++|++++
T Consensus 364 ~~~-----~~~iRis~~~~~~~e~i~~~~~~l~~~l 394 (397)
T 2ord_A 364 PAG-----NNTIRFLPPLTVEYGEIDLAVETLKKVL 394 (397)
T ss_dssp EET-----TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred cCC-----CCEEEEECCcCCCHHHHHHHHHHHHHHH
Confidence 962 679999954 58999999999999876
No 120
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.95 E-value=1.8e-26 Score=231.73 Aligned_cols=279 Identities=10% Similarity=0.014 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC--hhhhhhhcCCeEeeecc
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS--YPSITDCVKSRLYKWAG 220 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~--~~~~~~~~g~~~~~~~~ 220 (456)
.++++.++++++. . .++.|++|+|+++++++++.++.++|| +|++++|+|+. +...++..|.+++.++.
T Consensus 49 ~~~~~~la~~~~~---~--~~~~v~~~~sgt~al~~~~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 119 (411)
T 3nnk_A 49 NEVMALYRGVFRT---E--NRWTMLVDGTSRAGIEAILVSAIRPGD----KVLVPVFGRFGHLLCEIARRCRAEVHTIEV 119 (411)
T ss_dssp HHHHHHHHHHHTC---C--CSEEEEEESCHHHHHHHHHHHHCCTTC----EEEEEECSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHhCC---C--CCcEEEECCCcHHHHHHHHHHhcCCCC----EEEEecCCchHHHHHHHHHHcCCeEEEEec
Confidence 5677777777653 1 233488999999999999999999999 99999999987 88888999999887765
Q ss_pred C------cccccc----CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCc
Q 012785 221 D------AKRFNK----DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVS 285 (456)
Q Consensus 221 d------~~~l~~----~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~S 285 (456)
+ .+.++. .++++|++++||||||.+++ ++|+++|+++|+||++.......-....+.++++.|++
T Consensus 120 ~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~ 199 (411)
T 3nnk_A 120 PWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQ 199 (411)
T ss_dssp CTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCST
T ss_pred CCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcccchhccCCcEEEecCc
Confidence 4 344432 27899999999999999977 48999999999999987422211112335689999999
Q ss_pred cccCCCCceEEEEEEeCHHHHHHHHHHH------------------------------------hhccCcCChHHHHHHH
Q 012785 286 KSTGHAGTRIGWALVKDMEVAKKMTKYI------------------------------------ELNTIGVSKDSQLRAA 329 (456)
Q Consensus 286 K~~g~~G~RiG~l~~~~~~~~~~l~~~~------------------------------------~~~~~~~s~~~q~~a~ 329 (456)
|.++ .+.++||++++ +++++++.... .....+.+...+.++.
T Consensus 200 K~l~-~~~g~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 277 (411)
T 3nnk_A 200 KCLG-GPSGTSPITLS-ARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGAR 277 (411)
T ss_dssp TTTC-CCSSEEEEEEC-HHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHH
T ss_pred cccC-CCCceEEEEEC-HHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHH
Confidence 9754 34469999996 88988887643 0122355667777776
Q ss_pred HHHHhhhCCCCCCCCcchhH-HHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cH
Q 012785 330 KVLKVVSDSCKPSGSEDECF-FEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EI 406 (456)
Q Consensus 330 ~~L~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~ 406 (456)
+.++.. .+. +++.+++++++++.+.+.|++.+ +.+..+.+.. .++++|+.++. +.
T Consensus 278 ~al~~~-----------~~~g~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~----------~~~~~~~~~~~~~~~ 335 (411)
T 3nnk_A 278 ECARLI-----------LQEGLDYGIARHKLHGDALVKGIQAMG-LETFGDLKHK----------MNNVLGVVIPQGING 335 (411)
T ss_dssp HHHHHH-----------HHHCHHHHHHHHHHHHHHHHHHHHHTT-CCBCSCGGGB----------CSSEEEEECCTTCCH
T ss_pred HHHHHH-----------HHhhHHHHHHHHHHHHHHHHHHHHHcC-CEeCCCcccc----------cccEEEEECCCCCCH
Confidence 777632 233 77889999999999999999874 4444433211 23378888853 45
Q ss_pred HHHHHHHHh-CCEEeecCCCCCCCCCeEEEEe-c--CChhHHHHHHHHHHhhh
Q 012785 407 EDCESFLKG-NKILTRSGKHFGFSPKYVRISM-L--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 407 ~~~~~~l~~-~gI~v~pg~~fg~~~~~iRis~-~--~~~e~i~~~l~~L~~~l 455 (456)
+.+.+.|.+ +||.+++|.... .++++||++ . .+++++++++++|++++
T Consensus 336 ~~l~~~l~~~~gi~v~~g~~~~-~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l 387 (411)
T 3nnk_A 336 DQARKLMLEDFGIEIGTSFGPL-HGKVWRIGTMGYNARKDCVMTTLSALEAVL 387 (411)
T ss_dssp HHHHHHHHHHHSEEEEECCGGG-TTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCeEEeCccCCC-CCCEEEEeCccCcCCHHHHHHHHHHHHHHH
Confidence 667666655 599999984332 467999998 4 27899999999999875
No 121
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.95 E-value=2.2e-26 Score=229.90 Aligned_cols=284 Identities=15% Similarity=0.145 Sum_probs=203.6
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh----hhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI----TDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~----~~~~g~~~~~ 217 (456)
..+|+++++++++. ++.|++++| ++++.++++++..+|| +|+++.|+|+..... ++..|.++..
T Consensus 54 ~~~l~~~la~~~~~-------~~~i~~~sG-t~a~~~~~~~~~~~g~----~vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 121 (386)
T 1cs1_A 54 RDVVQRALAELEGG-------AGAVLTNTG-MSAIHLVTTVFLKPGD----LLVAPHDCYGGSYRLFDSLAKRGCYRVLF 121 (386)
T ss_dssp HHHHHHHHHHHHTC-------SEEEEESSH-HHHHHHHHHHHCCTTC----EEEEETTCCHHHHHHHHHHHTTTSCEEEE
T ss_pred HHHHHHHHHHHhCC-------CcEEEeCCH-HHHHHHHHHHHhCCCC----EEEEecCCcHhHHHHHHHHHHhcCCEEEE
Confidence 47999999999964 367888777 8999999999999999 999999999974443 4667888887
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCcccc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~ 288 (456)
++. |.+.++. .+++++++++|+||||.+++ ++|+++|+++|+||+|....+.. +...+.+++++|+||.+
T Consensus 122 ~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~-~~~~~~di~~~s~sK~~ 200 (386)
T 1cs1_A 122 VDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQN-PLALGADLVLHSCTKYL 200 (386)
T ss_dssp ECTTCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC-GGGGTCSEEEEETTTTT
T ss_pred eCCCCHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCC-ccccCceEEEEcCcccc
Confidence 775 5555543 36789999999999999987 48999999999999998654321 12346789999999999
Q ss_pred CCCCceE-EEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 012785 289 GHAGTRI-GWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMA 367 (456)
Q Consensus 289 g~~G~Ri-G~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 367 (456)
+.+|.|+ ||++++++++++.+.......+.+.+++.+.++...++ .+....+.+.++++.+.+.
T Consensus 201 ~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~---------------~~~~~~~~~~~~~~~l~~~ 265 (386)
T 1cs1_A 201 NGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLR---------------TLVPRMELAQRNAQAIVKY 265 (386)
T ss_dssp TCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHT---------------THHHHHHHHHHHHHHHHHH
T ss_pred cCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhccc---------------HHHHHHHHHHHHHHHHHHH
Confidence 9899997 99999755898988887765566688888887766554 2344556677788888888
Q ss_pred HHhcCCccccCCCC-----cccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCC----------------
Q 012785 368 VQKSGLFSVPELPS-----QFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHF---------------- 426 (456)
Q Consensus 368 L~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~f---------------- 426 (456)
|++++.+.....++ ++ ..........++++.+.+++..+.+.+.|.++||.+++.+ |
T Consensus 266 l~~~~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-~g~~~sl~~~~~~~~~~ 343 (386)
T 1cs1_A 266 LQTQPLVKKLYHPSLPENQGH-EIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAES-LGGVESLISHAATMTHA 343 (386)
T ss_dssp HTTCTTEEEEECTTSTTSTTH-HHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSEEBSC-CCSSSCEEEEGGGTTTT
T ss_pred HhcCCCeEEEECCCCCCCccH-HHHHHhcCCCceEEEEEECCCHHHHHHHHHhCCcceEccc-CCCcceeeecccccccc
Confidence 87764322110000 00 0000000123556777776556678888999999987421 1
Q ss_pred ----------CCCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 427 ----------GFSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 427 ----------g~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
|..++++||++.. ++++++.+.+.|+++.
T Consensus 344 ~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 344 GMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAAN 384 (386)
T ss_dssp TSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 2236899999975 4556666666666543
No 122
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.95 E-value=7.4e-26 Score=223.11 Aligned_cols=264 Identities=13% Similarity=0.116 Sum_probs=198.5
Q ss_pred CceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC-hhhhhhhcCCeEeeecc------Cccccc-cCCCeEEE
Q 012785 163 NHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS-YPSITDCVKSRLYKWAG------DAKRFN-KDGPYIEL 234 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~-~~~~~~~~g~~~~~~~~------d~~~l~-~~~~~~i~ 234 (456)
+++|++|+|++++++++++++..+ + .+++..|.|.. +...++..|++++.++. |.+.++ ..++++++
T Consensus 61 ~~~v~~~~g~t~al~~~~~~l~~~-~----~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~v~ 135 (362)
T 3ffr_A 61 NYEVLFLASATEIWERIIQNCVEK-K----SFHCVNGSFSKRFYEFAGELGREAYKEEAAFGKGFYPADITVPADAEIIC 135 (362)
T ss_dssp TEEEEEESCHHHHHHHHHHHHCSS-E----EEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCGGGCCCCTTCCEEE
T ss_pred CcEEEEeCCchHHHHHHHHhccCC-c----EEEEcCcHHHHHHHHHHHHhCCCeEEEecCCCCCCCHHHHhccCCccEEE
Confidence 578999999999999999999877 5 77788888873 34466778988876654 445554 23679999
Q ss_pred EcCCCCCCcccch-----HHhhhc-CcEEEeeecCCCCCCCCCCCCCCCcEEEecCccccC-CCCceEEEEEEeCHHHHH
Q 012785 235 VTSPNNPDGSVRQ-----SVVNRS-GGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTG-HAGTRIGWALVKDMEVAK 307 (456)
Q Consensus 235 v~~P~NPtG~~~~-----~l~~~~-~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g-~~G~RiG~l~~~~~~~~~ 307 (456)
+++||||||.+++ ++|+++ |+++|+|++|..... +. ...+.+++++|+||.++ ++| +|+++++ +++++
T Consensus 136 ~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~-~~-~~~~~d~~~~s~~K~~~~~~G--~g~~~~~-~~~~~ 210 (362)
T 3ffr_A 136 LTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYP-KF-DWTKIDSVFFSVQKCFGLPAG--LGVWILN-DRVIE 210 (362)
T ss_dssp EESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSS-CC-CTTSCSEEEEETTSTTCCCSC--CEEEEEE-HHHHH
T ss_pred EEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCc-cc-ChhHCcEEEEecccccCCCCc--eEEEEEC-HHHHH
Confidence 9999999999987 378999 999999999885322 11 11226799999999998 788 5778886 88888
Q ss_pred HHHHHHh---------------------hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 012785 308 KMTKYIE---------------------LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRM 366 (456)
Q Consensus 308 ~l~~~~~---------------------~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 366 (456)
++..... ....+.+...+.++..+++.+.+ ..+++.+++++++++.+.+
T Consensus 211 ~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~----------~~~~~~~~~~~~~~~~l~~ 280 (362)
T 3ffr_A 211 KSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQ----------ISADGIRKQTEEKAALINT 280 (362)
T ss_dssp HHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHH----------HCHHHHHHHHHHHHHHHHH
T ss_pred HhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHH----------ccHHHHHHHHHHHHHHHHH
Confidence 8877643 11455677777777777763221 2267888999999999999
Q ss_pred HHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC--ChhHH
Q 012785 367 AVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD--RDENY 444 (456)
Q Consensus 367 ~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~~e~i 444 (456)
.|++++++.+..+.+.. ..+.++|+.++++.+.+.+.|.++||.+++|..+. .++++||++.. ++|++
T Consensus 281 ~L~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g~~~~-~~~~iRis~~~~~~~e~i 350 (362)
T 3ffr_A 281 YIESSKVFSFGVEDAKL---------RSMTTIVANTTMLPGEINKILEPFDMAVGAGYGSK-KETQIRIANFPAHSLEQV 350 (362)
T ss_dssp HHHHCSSEEESSSCGGG---------BCSSEEEEEESSCHHHHHHHHGGGTEEEEECSGGG-TTTEEEEECCTTSCHHHH
T ss_pred HHHHccCceeccCChhh---------cCCceEEEecCCCHHHHHHHHHHCCeEEecCcccc-CCCEEEEECCCCCCHHHH
Confidence 99998666665433221 11236788886566778888888899999986543 47899999864 88999
Q ss_pred HHHHHHHHhhhC
Q 012785 445 NLFVQRLSKILS 456 (456)
Q Consensus 445 ~~~l~~L~~~l~ 456 (456)
++++++|++++.
T Consensus 351 ~~l~~~l~~~~~ 362 (362)
T 3ffr_A 351 HKLVQTLKEKIG 362 (362)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC
Confidence 999999998763
No 123
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.95 E-value=4.2e-26 Score=229.46 Aligned_cols=278 Identities=12% Similarity=0.038 Sum_probs=204.5
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEE-EccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC--hhhhhhhcCCeEeeec
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIV-VGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS--YPSITDCVKSRLYKWA 219 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~-~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~--~~~~~~~~g~~~~~~~ 219 (456)
.+++++++++++. ++++++ +++|+++++.+++.++.++|| +|++++|+|+. +...++..|.+++.++
T Consensus 47 ~~l~~~la~~~g~------~~~~~~~~~~s~t~al~~~~~~l~~~gd----~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~ 116 (416)
T 3isl_A 47 NETMEMLRELFQT------KNRWAYPIDGTSRAGIEAVLASVIEPED----DVLIPIYGRFGYLLTEIAERYGANVHMLE 116 (416)
T ss_dssp HHHHHHHHHHTTC------CCSEEEEEESCHHHHHHHHHHHHCCTTC----EEEEEESSHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHhCC------CCCcEEEecCcHHHHHHHHHHHhcCCCC----EEEEecCCcccHHHHHHHHhcCCeeEEEe
Confidence 5677777777653 344555 889999999999999999999 99999999987 7778888999998777
Q ss_pred cC------cccccc----CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecC
Q 012785 220 GD------AKRFNK----DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTV 284 (456)
Q Consensus 220 ~d------~~~l~~----~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~ 284 (456)
.| .+.++. .++++|++++||||||.+++ ++|+++|+++|+|++|.......-....+.+++++|+
T Consensus 117 ~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~ 196 (416)
T 3isl_A 117 CEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGT 196 (416)
T ss_dssp CCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEECCS
T ss_pred cCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhcCCCEEEecC
Confidence 64 344432 36789999999999999877 4899999999999998743221111234568999999
Q ss_pred ccccCCCCceEEEEEEeCHHHHHHHHHHH--------------------------------------hhccCcCChHHHH
Q 012785 285 SKSTGHAGTRIGWALVKDMEVAKKMTKYI--------------------------------------ELNTIGVSKDSQL 326 (456)
Q Consensus 285 SK~~g~~G~RiG~l~~~~~~~~~~l~~~~--------------------------------------~~~~~~~s~~~q~ 326 (456)
+|.++ .+.++||++++ +++++++...+ .....+.+...+.
T Consensus 197 ~K~l~-g~~g~g~~~~~-~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (416)
T 3isl_A 197 QKCLS-VPSGMAPITYN-ERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLY 274 (416)
T ss_dssp SSTTC-CCSSEEEEEEC-HHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHH
T ss_pred ccccC-CCCCeEEEEEC-HHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHH
Confidence 99753 34458999996 88888876421 1113355677777
Q ss_pred HHHHHHHhhhCCCCCCCCcchhH-HHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-
Q 012785 327 RAAKVLKVVSDSCKPSGSEDECF-FEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ- 404 (456)
Q Consensus 327 ~a~~~L~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~- 404 (456)
++.+.++.. .++ +++.+++++++++.+.+.|++. ++.+..+.+.. .+.++++.++.
T Consensus 275 a~~~al~~~-----------~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~----------~~~~~~~~~~~~ 332 (416)
T 3isl_A 275 ALREGVRLV-----------LEEGLETRFERHRHHEAALAAGIKAM-GLRLFGDDSCK----------MPVVTCVEIPGG 332 (416)
T ss_dssp HHHHHHHHH-----------HHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGB----------CTTEEEEECCTT
T ss_pred HHHHHHHHH-----------HHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCcccc----------CCcEEEEeCCCC
Confidence 777777632 334 7889999999999999999986 45555443311 12367888852
Q ss_pred -cHHHHHHHHHhC-CEEeecCCCCCCCCCeEEEEecC--ChhH-HHHHHHHHHhhh
Q 012785 405 -EIEDCESFLKGN-KILTRSGKHFGFSPKYVRISMLD--RDEN-YNLFVQRLSKIL 455 (456)
Q Consensus 405 -~~~~~~~~l~~~-gI~v~pg~~fg~~~~~iRis~~~--~~e~-i~~~l~~L~~~l 455 (456)
+.+.+.+.|.++ ||.+++|... ..++++||++.. ++++ +++++++|++++
T Consensus 333 ~~~~~l~~~L~~~~gi~v~~g~~~-~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~ 387 (416)
T 3isl_A 333 IDGESVRDMLLAQFGIEIASSFGP-LAGKIWRIGTMGYSCRKENVLFVLAGLEAVL 387 (416)
T ss_dssp CCHHHHHHHHHHHHCEECBCCCST-TTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCEEEecCCCC-CCCCEEEEecccCCCcHHHHHHHHHHHHHHH
Confidence 566677777655 9999998743 247899999832 5555 999999999875
No 124
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.95 E-value=2.8e-27 Score=239.90 Aligned_cols=272 Identities=12% Similarity=0.013 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc--CCCCCCCcEEEEeCCCCCChhhhhhhc---------
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS--SQDASEPISVVSAAPYYSSYPSITDCV--------- 211 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~--~~gd~~~~~Vlv~~P~y~~~~~~~~~~--------- 211 (456)
.+|++.++++++. ..++|++|+|++++++.+++++. ..++ +|++.+|+|+++...+...
T Consensus 88 ~~l~~~la~~~~~------~~~~v~~~~gg~ea~~~a~~~~~~~~~~~----~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 157 (433)
T 1zod_A 88 VDLATRLANITPP------GLDRALLLSTGAESNEAAIRMAKLVTGKY----EIVGFAQSWHGMTGAAASATYSAGRKGV 157 (433)
T ss_dssp HHHHHHHHHHSCT------TCCEEEEESCHHHHHHHHHHHHHHHHTCC----EEEEETTCCCCSSHHHHHTCCSSCCSSS
T ss_pred HHHHHHHHHhCCC------CcCEEEEeCchHHHHHHHHHHHHHhhCCC----eEEEECCCcCCCChhHHhhcCCcccccc
Confidence 4555555554421 24799999999999999998654 3356 8999999999876543322
Q ss_pred -----CCeEeeecc----------------Ccccccc-------CCCeEEEEcCC-CCCCccc-ch--------HHhhhc
Q 012785 212 -----KSRLYKWAG----------------DAKRFNK-------DGPYIELVTSP-NNPDGSV-RQ--------SVVNRS 253 (456)
Q Consensus 212 -----g~~~~~~~~----------------d~~~l~~-------~~~~~i~v~~P-~NPtG~~-~~--------~l~~~~ 253 (456)
|.+.+.++. |.+.++. .++++++ ++| |||||.. .+ ++|+++
T Consensus 158 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi-~~p~~~~~G~~~~~~~~l~~l~~l~~~~ 236 (433)
T 1zod_A 158 GPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFI-AEPILSSGGIIELPDGYMAALKRKCEAR 236 (433)
T ss_dssp CCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEE-ECSEETTTTCEECCTTHHHHHHHHHHHH
T ss_pred CCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEE-EccccCCCCcccCCHHHHHHHHHHHHHh
Confidence 344443321 2444432 2344554 466 5889964 33 378999
Q ss_pred CcEEEeeecCCCCCCCCCC---CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhh--ccCcCChHHHHHH
Q 012785 254 GGILVHDLAYYWPQYTSIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIEL--NTIGVSKDSQLRA 328 (456)
Q Consensus 254 ~~~iI~De~y~~~~~~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~--~~~~~s~~~q~~a 328 (456)
|+++|+||+|.+..+.+.. ...+....+.||||.++ +|+|+||++++ +++++.+...... .+++.++++|.++
T Consensus 237 ~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~sK~~~-~G~~ig~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~a~ 314 (433)
T 1zod_A 237 GMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLG-AGLPLAAIVTS-AAIEERAHELGYLFYTTHVSDPLPAAVG 314 (433)
T ss_dssp TCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHH-TTSSCEEEEEC-HHHHHHHHHTTCCCCCTTTTCHHHHHHH
T ss_pred CCEEEEeccccCCCcCchHhHHhhcCCCCCEEEeccccc-CCCCeeEEEEh-HHHHHhhccCCCCCCCCCCcCHHHHHHH
Confidence 9999999999965433211 10111222459999999 59999999997 8999888774322 5788899999999
Q ss_pred HHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc----CCccccCCCCcccccccccCCCCCceEEeecCc
Q 012785 329 AKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ 404 (456)
Q Consensus 329 ~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~ 404 (456)
.++|+.+.+. ...++++++++.+.+.|+++ +.+...++ .++|+|++++.
T Consensus 315 ~aal~~~~~~-------------~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~--------------~g~~~~i~~~~ 367 (433)
T 1zod_A 315 LRVLDVVQRD-------------GLVARANVMGDRLRRGLLDLMERFDCIGDVRG--------------RGLLLGVEIVK 367 (433)
T ss_dssp HHHHHHHHHT-------------THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE--------------ETTEEEEEEEE
T ss_pred HHHHHHHHhC-------------CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEE--------------EEEEEEEEEec
Confidence 9988754332 23455566666666666553 32222222 23478887742
Q ss_pred ----------cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 405 ----------EIEDCESFLKGNKILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 405 ----------~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
....+.+.|.++||.+.||..|+ .++++||+++ .+++++++++++|++++
T Consensus 368 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~-~~~~lRi~~~~~~t~~~i~~~l~~l~~~l 429 (433)
T 1zod_A 368 DRRTKEPADGLGAKITRECMNLGLSMNIVQLPG-MGGVFRIAPPLTVSEDEIDLGLSLLGQAI 429 (433)
T ss_dssp ETTTTEECTTHHHHHHHHHHHTTEECCEECCTT-SCCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CccccCCChHHHHHHHHHHHHCCCeEeccCCCC-CCCEEEEECCcCCCHHHHHHHHHHHHHHH
Confidence 24567777889999999998876 4689999754 48999999999998875
No 125
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.95 E-value=3.8e-26 Score=227.25 Aligned_cols=284 Identities=12% Similarity=0.058 Sum_probs=205.7
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc---CCCCCCCcEEEEe-CCCCCChh-hhhhhcCCeEee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS---SQDASEPISVVSA-APYYSSYP-SITDCVKSRLYK 217 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~---~~gd~~~~~Vlv~-~P~y~~~~-~~~~~~g~~~~~ 217 (456)
.+++++++++++.. ... ++++|++|+|++++++++++++. ++|| +|++. .|+|+.+. ..++..|.+++.
T Consensus 41 ~~~~~~l~~~~~~~-~~~-~~~~v~~~~g~t~al~~~~~~~~~~~~~gd----~vlv~~~~~~~~~~~~~~~~~g~~~~~ 114 (385)
T 2bkw_A 41 QRVLKNTRAVFKSA-AAS-KSQPFVLAGSGTLGWDIFASNFILSKAPNK----NVLVVSTGTFSDRFADCLRSYGAQVDV 114 (385)
T ss_dssp HHHHHHHHHHTTCC-GGG-TCEEEEEESCTTHHHHHHHHHHSCTTCSCC----EEEEECSSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhCCC-CCC-CCceEEEcCchHHHHHHHHHHHhccCCCCC----eEEEEcCCcchHHHHHHHHHcCCceEE
Confidence 57788888887541 112 35799999999999999999997 8899 98777 66777764 677788999887
Q ss_pred ecc-C------cccccc----CCCeEEEEcCCCCCCcccch-----HHhhhc--CcEEEeeecCCCCCCCCCC-CCCCCc
Q 012785 218 WAG-D------AKRFNK----DGPYIELVTSPNNPDGSVRQ-----SVVNRS--GGILVHDLAYYWPQYTSIT-YPADHD 278 (456)
Q Consensus 218 ~~~-d------~~~l~~----~~~~~i~v~~P~NPtG~~~~-----~l~~~~--~~~iI~De~y~~~~~~~~~-~~~~~~ 278 (456)
++. | .+.++. .++++|++++|+||||.+++ ++|+++ |+++|+|++|..... ++. ...+.+
T Consensus 115 v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~-~~~~~~~~~d 193 (385)
T 2bkw_A 115 VRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCE-EFEFDEWGVD 193 (385)
T ss_dssp ECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTS-CCCTTTTTCS
T ss_pred EecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCc-cccccccCce
Confidence 776 3 333332 26789999999999999977 488999 999999999984322 221 223568
Q ss_pred EEEecCcccc-CCCCceEEEEEEeCHHHHH-HHH------------------HHH-hhc------cCcCChHHHHHHHHH
Q 012785 279 LMLFTVSKST-GHAGTRIGWALVKDMEVAK-KMT------------------KYI-ELN------TIGVSKDSQLRAAKV 331 (456)
Q Consensus 279 i~i~S~SK~~-g~~G~RiG~l~~~~~~~~~-~l~------------------~~~-~~~------~~~~s~~~q~~a~~~ 331 (456)
++++|+||.+ |.+| +||++++ +++++ +++ ... ... ....+...+.++.++
T Consensus 194 ~~~~s~~K~~~~~~G--~G~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a 270 (385)
T 2bkw_A 194 FALTASQKAIGAPAG--LSISLCS-SRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVA 270 (385)
T ss_dssp EEEEESSSTTCCCSC--EEEEEEC-HHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHH
T ss_pred EEEecCccccccCCc--ceEEEEc-HHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHH
Confidence 9999999966 4677 4999997 77766 442 110 111 134667777777777
Q ss_pred HHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHH-HhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHH
Q 012785 332 LKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAV-QKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCE 410 (456)
Q Consensus 332 L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 410 (456)
++.+. +..+++.+++++++++.+.+.| +++ ++.+..+.+.. ...++++|+.+++ .+.+.
T Consensus 271 l~~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~ 330 (385)
T 2bkw_A 271 LKEIL----------EEGLHKRWDLHREMSDWFKDSLVNGL-QLTSVSRYPSN--------MSAHGLTAVYVAD-PPDVI 330 (385)
T ss_dssp HHHHH----------HHCHHHHHHHHHHHHHHHHHHHHTTT-CCEESSCSSST--------TBCSSCEEEECSC-HHHHH
T ss_pred HHHHH----------HccHHHHHHHHHHHHHHHHHHHHHhc-CceecccCccc--------ccCCceEEEecCC-HHHHH
Confidence 76321 1226778888999999999999 876 35544322110 0123478998875 66677
Q ss_pred HHHHhCCEEeecCCCCCCCCCeEEEE-ec-----CChhHHHHHHHHHHhhhC
Q 012785 411 SFLKGNKILTRSGKHFGFSPKYVRIS-ML-----DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 411 ~~l~~~gI~v~pg~~fg~~~~~iRis-~~-----~~~e~i~~~l~~L~~~l~ 456 (456)
+.|.++||.+++|..+...++++||+ ++ .+++++++++++|+++++
T Consensus 331 ~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~ 382 (385)
T 2bkw_A 331 AFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQ 382 (385)
T ss_dssp HHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHHHH
Confidence 78889999999998765557899999 76 388999999999998764
No 126
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.95 E-value=1.8e-26 Score=236.02 Aligned_cols=278 Identities=10% Similarity=0.006 Sum_probs=195.4
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC--------CCCCCCcEEEEeCCCCCChhhhhhhcCC-
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS--------QDASEPISVVSAAPYYSSYPSITDCVKS- 213 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~--------~gd~~~~~Vlv~~P~y~~~~~~~~~~g~- 213 (456)
.++++++++++... .+. ..++|++|+|++++++.+++++.. +++ +|++.+|+|+++...+...+.
T Consensus 94 ~~~~~~la~~l~~~-~~~-~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~----~vi~~~~~yhg~~~~~~~~~~~ 167 (460)
T 3gju_A 94 TEASITLAKMIIDR-APK-GMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKK----KIISRWRGYHGSGVMTGSLTGL 167 (460)
T ss_dssp CHHHHHHHHHHHHH-SCT-TEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCC----EEEEETTCCCCSSHHHHHHCCC
T ss_pred CHHHHHHHHHHHhh-CCC-CcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCC----EEEEECCCcCCCCHHHhhccCC
Confidence 45666666666432 111 346999999999999999998874 456 999999999998876655432
Q ss_pred --------------eEeeecc----C-------------cccccc-------CCCeEEEEcCCCCCCcccch--------
Q 012785 214 --------------RLYKWAG----D-------------AKRFNK-------DGPYIELVTSPNNPDGSVRQ-------- 247 (456)
Q Consensus 214 --------------~~~~~~~----d-------------~~~l~~-------~~~~~i~v~~P~NPtG~~~~-------- 247 (456)
..++.+. + .+.++. .++++|+++.++|++|....
T Consensus 168 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l 247 (460)
T 3gju_A 168 DLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKI 247 (460)
T ss_dssp GGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHH
T ss_pred cccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHH
Confidence 2222221 1 233322 24566777666777777433
Q ss_pred -HHhhhcCcEEEeeecCCCCCCCCCC---CCCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHH-------Hhh
Q 012785 248 -SVVNRSGGILVHDLAYYWPQYTSIT---YPADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKY-------IEL 315 (456)
Q Consensus 248 -~l~~~~~~~iI~De~y~~~~~~~~~---~~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~-------~~~ 315 (456)
++|+++|+++|+||+|.+..+.+-. ...+...-+.+|||+++ .| +|+||++++ +++++.+... ...
T Consensus 248 ~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~l~-gG~~~lg~v~~~-~~i~~~~~~~~~~~~~~~~~ 325 (460)
T 3gju_A 248 QAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLT-SAYAPLSGVIVA-DRVWQVLVQGSDKLGSLGHG 325 (460)
T ss_dssp HHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGT-TTSSCCEEEEEE-HHHHHHHHHHHHHHCSCSCC
T ss_pred HHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeeeehhhc-CCCCCeEEEEEC-HHHHHHHhcccccccccccC
Confidence 3899999999999999975443311 11111222457999998 67 899999997 9999988643 344
Q ss_pred ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCC
Q 012785 316 NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQP 395 (456)
Q Consensus 316 ~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~ 395 (456)
.+++.++++|.++.++|+.+.+ ++++++.++..+..++.+.+.+++++.+...++.|.
T Consensus 326 ~t~~~~~~~~aaa~aal~~~~~---------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~------------- 383 (460)
T 3gju_A 326 WTYSAHPICVAAGVANLELIDE---------MDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGM------------- 383 (460)
T ss_dssp CTTTTCHHHHHHHHHHHHHHHH---------TTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETT-------------
T ss_pred CCCCCCHHHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeE-------------
Confidence 6889999999999999986533 346677777777777777777777665444444443
Q ss_pred ceEEeecCcc-------------HHHHHHHHHhCCEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 396 AFAWLKCEQE-------------IEDCESFLKGNKILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 396 ~f~~~~~~~~-------------~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
|+++.+..+ ...+.+.+.++||.++|+. .++++||+ +..++|++++++++|++++
T Consensus 384 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l 453 (460)
T 3gju_A 384 -LAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMP----QGDILGFAPPLCLTREQADIVVSKTADAV 453 (460)
T ss_dssp -EEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECS----SSCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred -EEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCC----CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 567766421 4467788889999999965 36899999 4459999999999999876
No 127
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.95 E-value=5.7e-26 Score=227.94 Aligned_cols=315 Identities=13% Similarity=0.094 Sum_probs=213.0
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCC---CcccCCCHH--HHH-----HHHHHHHHhcCccCCC
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVR---NLCWFLEPE--FAK-----EVVRLHKVVGNAITEN 163 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~---G~~~~~~~~--lr~-----aia~~~~~~g~~~~~~ 163 (456)
...|||..|.+.+ ++.+.++.. ..+.... ...|+... | .+. +++ .++++++. ++
T Consensus 23 ~~~i~~~~~~~~~--~~~v~~a~~-~~~~~~~--~~~y~~~~~~~g-----~~~~~~~e~~ar~~la~~~g~------~~ 86 (407)
T 2dkj_A 23 REGLELIASENFV--SKQVREAVG-SVLTNKY--AEGYPGARYYGG-----CEVIDRVESLAIERAKALFGA------AW 86 (407)
T ss_dssp HTSEECCTTCCCC--CHHHHHHHT-SGGGGCC--CCEETTEESSSC-----CHHHHHHHHHHHHHHHHHHTC------SE
T ss_pred hcceeeccCCCCC--CHHHHHHHH-hhhhcCc--ccCCCcccccCC-----chHHHHHHHHHHHHHHHHhCC------Cc
Confidence 4679999998877 333443322 1121111 12354332 3 232 344 44444432 23
Q ss_pred ceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCCh---hhhhhhcCC--eEeeec-------cCcccccc----
Q 012785 164 HHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSY---PSITDCVKS--RLYKWA-------GDAKRFNK---- 227 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~---~~~~~~~g~--~~~~~~-------~d~~~l~~---- 227 (456)
++|++++|+ +++.++++++..+|| +|++++|+|+.+ ...++..|. +.+.++ +|.+.++.
T Consensus 87 ~~i~~~sGt-~a~~~~~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~ 161 (407)
T 2dkj_A 87 ANVQPHSGS-QANMAVYMALMEPGD----TLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALE 161 (407)
T ss_dssp EECCCSSHH-HHHHHHHHHHCCTTC----EEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHH
T ss_pred ceEEecchH-HHHHHHHHHhcCCCC----EEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhh
Confidence 457777776 599999999999999 999999999998 355556665 444443 33444432
Q ss_pred CCCeEEEEcCCCCCCcccch---HHhhhcCcEEEeeecCCC-CCCCCC--CCCCCCcEEEecCccccCCCCceEEEEEEe
Q 012785 228 DGPYIELVTSPNNPDGSVRQ---SVVNRSGGILVHDLAYYW-PQYTSI--TYPADHDLMLFTVSKSTGHAGTRIGWALVK 301 (456)
Q Consensus 228 ~~~~~i~v~~P~NPtG~~~~---~l~~~~~~~iI~De~y~~-~~~~~~--~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~ 301 (456)
.+++++++++|+||+-..+. ++|+++|+++|+||+|.. ..+.+. ......+++++|+||. ++|.|+||++++
T Consensus 162 ~~~~~v~~~~p~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~--l~g~~~G~~~~~ 239 (407)
T 2dkj_A 162 HRPKVIVAGASAYPRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKT--LRGPRGGLILSN 239 (407)
T ss_dssp HCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGG--GCCCSCEEEEES
T ss_pred cCCeEEEEeccccCCCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEecccc--CCCCCceEEEEC
Confidence 26788989999999433333 378999999999999985 111111 0112368999999995 468899999996
Q ss_pred CHHHHHHHHHHHhhccCcCChHHHH-HHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCC-
Q 012785 302 DMEVAKKMTKYIELNTIGVSKDSQL-RAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPEL- 379 (456)
Q Consensus 302 ~~~~~~~l~~~~~~~~~~~s~~~q~-~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~- 379 (456)
++++++.+.........+.+...+. ++.++++... ++++++.+++++++++.+.+.|++.+ +.+..+
T Consensus 240 ~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~ 308 (407)
T 2dkj_A 240 DPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEAL----------QPEFKEYSRLVVENAKRLAEELARRG-YRIVTGG 308 (407)
T ss_dssp CHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHH----------SHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGS
T ss_pred CHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHHHHHHhCC-ceeecCC
Confidence 5789998887764333444334444 5556665321 35678889999999999999999873 444432
Q ss_pred CCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCC----C-CCCCeEEEEec------CChhHHH
Q 012785 380 PSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHF----G-FSPKYVRISML------DRDENYN 445 (456)
Q Consensus 380 ~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~f----g-~~~~~iRis~~------~~~e~i~ 445 (456)
.++ +|+|+.++. +.+.+.+.|.++||.+++|..| + ..++++|++++ .++++++
T Consensus 309 ~~~-------------~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~ 375 (407)
T 2dkj_A 309 TDN-------------HLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMP 375 (407)
T ss_dssp CSS-------------SEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHH
T ss_pred CCc-------------eEEEEECcccCCCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHH
Confidence 233 378998863 5677888889999999999764 2 23678999985 5899999
Q ss_pred HHHHHHHhhh
Q 012785 446 LFVQRLSKIL 455 (456)
Q Consensus 446 ~~l~~L~~~l 455 (456)
+++++|++++
T Consensus 376 ~~~~~l~~~~ 385 (407)
T 2dkj_A 376 LVAELIDRAL 385 (407)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 128
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.95 E-value=4e-27 Score=237.92 Aligned_cols=262 Identities=13% Similarity=0.041 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhc-C--------
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCV-K-------- 212 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~-g-------- 212 (456)
.+|++.++++++ ... +++|++|+|++++++.+++++.. +++ +|++.+|+|+++...+... |
T Consensus 89 ~~l~~~la~~~~---~~~--~~~v~~~~gg~ea~~~ai~~~~~~~~~----~vi~~~p~yh~~~~~~~~~~~~~~~~~~~ 159 (419)
T 2eo5_A 89 LELAKKLVTYSP---GNF--QKKVFFSNSGTEAIEASIKVVKNTGRK----YIIAFLGGFHGRTFGSISLTASKAVQRSI 159 (419)
T ss_dssp HHHHHHHHHHSS---CSS--CEEEEEESSHHHHHHHHHHHHHTTSCC----EEEEETTCCCCSSHHHHHHCCSCGGGGCS
T ss_pred HHHHHHHHHhCC---CCc--CCEEEEeCchHHHHHHHHHHHHHhhCC----cEEEECCCcCCCCHhhHhhcCCccccccc
Confidence 455555555543 221 47999999999999999987654 377 9999999999765543321 1
Q ss_pred -----CeEeeecc----------------------Cccccc-c--------CCCeEEEEcCCC-CCCccc-ch-------
Q 012785 213 -----SRLYKWAG----------------------DAKRFN-K--------DGPYIELVTSPN-NPDGSV-RQ------- 247 (456)
Q Consensus 213 -----~~~~~~~~----------------------d~~~l~-~--------~~~~~i~v~~P~-NPtG~~-~~------- 247 (456)
.+++.++. |.+.++ . .++++ ++++|+ ||||.. .+
T Consensus 160 ~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~-vi~~p~~~~tG~~~~~~~~l~~l 238 (419)
T 2eo5_A 160 VGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAG-IFFEPIQGEGGYVIPPKNFFAEL 238 (419)
T ss_dssp SCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEE-EEECSSBTTTTSBCCCTTHHHHH
T ss_pred cCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEE-EEEeCccCCCCCccCCHHHHHHH
Confidence 12333222 233454 3 13344 455775 678964 33
Q ss_pred -HHhhhcCcEEEeeecCCCCCCCCCC---CCCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHHHhhccCcCCh
Q 012785 248 -SVVNRSGGILVHDLAYYWPQYTSIT---YPADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKYIELNTIGVSK 322 (456)
Q Consensus 248 -~l~~~~~~~iI~De~y~~~~~~~~~---~~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~ 322 (456)
++|+++|+++|+||+|.+..+.+.. ...+...-+.||||.++ +| +|+||++++ ++++ .+ ......+++.++
T Consensus 239 ~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~-~G~~riG~~~~~-~~~~-~~-~~~~~~t~~~n~ 314 (419)
T 2eo5_A 239 QKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALG-GGIMPIGATIFR-KDLD-FK-PGMHSNTFGGNA 314 (419)
T ss_dssp HHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGG-TTTSCCEEEEEE-GGGC-CC-------CCCCCH
T ss_pred HHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEeccccc-CCccceEEEEEc-hHhh-cC-CcccCCCCCCCH
Confidence 3789999999999999864333211 11111111348999999 69 999999997 7777 66 433446888999
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeec
Q 012785 323 DSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKC 402 (456)
Q Consensus 323 ~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~ 402 (456)
++|.++.++|+. +++.+++++++++.+.+.|+++ +...++ .++|+|+++
T Consensus 315 ~~~~aa~aal~~---------------~~~~~~~~~~~~~~l~~~L~~~--~~~~~~--------------~g~~~~i~~ 363 (419)
T 2eo5_A 315 LACAIGSKVIDI---------------VKDLLPHVNEIGKIFAEELQGL--ADDVRG--------------IGLAWGLEY 363 (419)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHTTS--SSEEEE--------------ETTEEEEEC
T ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHh--hhheEe--------------eeEEEEEEE
Confidence 999999999872 1227788999999999999775 222222 334788888
Q ss_pred C-c--cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 403 E-Q--EIEDCESFLKGNKILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 403 ~-~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
. . ... +.+.|.++||.++|+. ++++||+++ .+++++++++++|++++
T Consensus 364 ~~~~~~~~-~~~~l~~~Gv~v~~~~-----~~~lRis~~~~~t~e~i~~~l~~l~~~l 415 (419)
T 2eo5_A 364 NEKKVRDR-IIGESFKRGLLLLPAG-----RSAIRVIPPLVISEEEAKQGLDILKKVI 415 (419)
T ss_dssp SCHHHHHH-HHHHHHHTTEECEEET-----TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ecCccHHH-HHHHHHHCCCEEecCC-----CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3 2 244 7777789999999963 679999764 48999999999999875
No 129
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.95 E-value=1.7e-26 Score=233.95 Aligned_cols=268 Identities=12% Similarity=0.070 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc---C----CCCCCCcEEEEeCCCCCChhhhhhhc----
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS---S----QDASEPISVVSAAPYYSSYPSITDCV---- 211 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~---~----~gd~~~~~Vlv~~P~y~~~~~~~~~~---- 211 (456)
.+++++++++++. .+++|++|+|++++++++++++. . +++ +|++.+|+|+++...+...
T Consensus 89 ~~l~~~la~~~~~------~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~----~vi~~~~~yh~~~~~~~~~~~~~ 158 (429)
T 1s0a_A 89 IELCRKLVAMTPQ------PLECVFLADSGSVAVEVAMKMALQYWQAKGEARQ----RFLTFRNGYHGDTFGAMSVCDPD 158 (429)
T ss_dssp HHHHHHHHHHSCT------TCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCC----EEEEETTCCCCSSHHHHTTSCTT
T ss_pred HHHHHHHHHhCCC------CCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCC----eEEEECCCCCCCchhhhhhcCCc
Confidence 5677777777642 35799999999999999998754 2 577 9999999999875533221
Q ss_pred ------------CCeEeeec----------cCcccccc------CCCeEEEEcCC--CCCCcccch---------HHhhh
Q 012785 212 ------------KSRLYKWA----------GDAKRFNK------DGPYIELVTSP--NNPDGSVRQ---------SVVNR 252 (456)
Q Consensus 212 ------------g~~~~~~~----------~d~~~l~~------~~~~~i~v~~P--~NPtG~~~~---------~l~~~ 252 (456)
+...++++ .|.+.++. .++++++ ++| |||||..++ ++|++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi-~~p~~~n~tG~~~~~~~~l~~i~~l~~~ 237 (429)
T 1s0a_A 159 NSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVI-IEPIVQGAGGMRMYHPEWLKRIRKICDR 237 (429)
T ss_dssp TTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEE-ECSSEECTTTCEEBCTHHHHHHHHHHHH
T ss_pred hhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEE-EeecccCCCCcccCCHHHHHHHHHHHHH
Confidence 34444443 34444432 2344554 566 699996543 27899
Q ss_pred cCcEEEeeecCCCCCCCCC--C-CCCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHHH-----hhccCcCChH
Q 012785 253 SGGILVHDLAYYWPQYTSI--T-YPADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKYI-----ELNTIGVSKD 323 (456)
Q Consensus 253 ~~~~iI~De~y~~~~~~~~--~-~~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~~-----~~~~~~~s~~ 323 (456)
+|+++|+||+|.+..+.+. . ...+...-+.||||.++ +| +|+||++++ +++++.+.... ...+++++++
T Consensus 238 ~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~t~sK~l~-~G~~~iG~~~~~-~~~~~~l~~~~~~~~~~~~t~~~n~~ 315 (429)
T 1s0a_A 238 EGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALT-GGTMTLSATLTT-REVAETISNGEAGCFMHGPTFMGNPL 315 (429)
T ss_dssp HTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGG-TSSSCCEEEEEC-HHHHHHHHTSTTSSCSCCCTTTTCHH
T ss_pred cCCEEEEeehhhCCcccchHHHhhhcCCCCCEEEeccccc-CCCccceEEEeC-HHHHHHhhcCCCcccccCCCCCCCHH
Confidence 9999999999986433221 1 11111112448999998 79 999999996 88888886531 2347788999
Q ss_pred HHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcC---CccccCCCCcccccccccCCCCCceEEe
Q 012785 324 SQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSG---LFSVPELPSQFCTFLGRAFEPQPAFAWL 400 (456)
Q Consensus 324 ~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f~~~ 400 (456)
+|.++.++|+.+.+. ...++++++++.+.+.|+++. .+... ++.++|+|+
T Consensus 316 ~~~a~~aal~~~~~~-------------~~~~~~~~~~~~l~~~L~~l~~~~~~~~~--------------~~~g~~~~~ 368 (429)
T 1s0a_A 316 ACAAANASLAILESG-------------DWQQQVADIEVQLREQLAPARDAEMVADV--------------RVLGAIGVV 368 (429)
T ss_dssp HHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHHHHHGGGGGCTTEEEE--------------EEETTEEEE
T ss_pred HHHHHHHHHHHHHhC-------------CHHHHHHHHHHHHHHHHHHHhcCCCEEEE--------------EEeeEEEEE
Confidence 999999998854332 345667778888888887752 22111 123447899
Q ss_pred ecCc--cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhhC
Q 012785 401 KCEQ--EIEDCESFLKGNKILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 401 ~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l~ 456 (456)
+++. +...+.+.|.++||.++|+ .+++||+++ .+++++++++++|+++++
T Consensus 369 ~~~~~~~~~~l~~~l~~~Gi~v~~~------~~~iRis~~~~~t~e~i~~~~~~l~~~~~ 422 (429)
T 1s0a_A 369 ETTHPVNMAALQKFFVEQGVWIRPF------GKLIYLMPPYIILPQQLQRLTAAVNRAVQ 422 (429)
T ss_dssp EESSCBCHHHHHHHHHHTTEECCCB------TTEEEECCCTTCCHHHHHHHHHHHHHHTS
T ss_pred EECCcccHHHHHHHHHHCCCEEecc------CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 8864 4666777788999999983 378999954 599999999999998763
No 130
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.95 E-value=4.6e-27 Score=239.81 Aligned_cols=261 Identities=13% Similarity=0.120 Sum_probs=181.4
Q ss_pred EEEccCHHHHHHHHHHHhc-----C---CCCCCCcEEEEeCCCCCChhhhhhhcCCeE-------------eeecc----
Q 012785 166 IVVGTGSTQLFQAALYALS-----S---QDASEPISVVSAAPYYSSYPSITDCVKSRL-------------YKWAG---- 220 (456)
Q Consensus 166 I~~t~G~~~al~~~~~~l~-----~---~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~-------------~~~~~---- 220 (456)
|++|+|++++++.+++++. . +++ +|++.+|+|+++...+...+... ..++.
T Consensus 110 v~~~~ggseA~~~al~~~~~~~~~~g~~~~~----~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (452)
T 3n5m_A 110 IFFSNSGSEANETAFKIARQYYAQKGEPHRY----KFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCY 185 (452)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHTTTCTTCC----EEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTT
T ss_pred EEEeCchHHHHHHHHHHHHHHHHhcCCCCCC----EEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccc
Confidence 9999999999999999987 4 667 99999999999886666554321 11110
Q ss_pred -----C---------cccccc-------CCCeEEEEcCC-CCCCcccch---------HHhhhcCcEEEeeecCCCCCCC
Q 012785 221 -----D---------AKRFNK-------DGPYIELVTSP-NNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYT 269 (456)
Q Consensus 221 -----d---------~~~l~~-------~~~~~i~v~~P-~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~ 269 (456)
| .+.++. .++++++++.+ || ||.+++ ++|+++|+++|+||+|.+..+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~ 264 (452)
T 3n5m_A 186 RMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRT 264 (452)
T ss_dssp TSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred cCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcc
Confidence 1 333321 34567777777 89 997763 3899999999999999975443
Q ss_pred CCC---CCCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHH------HHhhccCcCChHHHHHHHHHHHhhhCCC
Q 012785 270 SIT---YPADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTK------YIELNTIGVSKDSQLRAAKVLKVVSDSC 339 (456)
Q Consensus 270 ~~~---~~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~------~~~~~~~~~s~~~q~~a~~~L~~~~~~~ 339 (456)
+.. ...+...-+.||||.++ .| +|+||++++ +++++.+.. .....+++.++++|.++.+.|+.+.+
T Consensus 265 g~~~~~~~~~~~~di~t~sK~l~-~G~~~ig~~~~~-~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-- 340 (452)
T 3n5m_A 265 GKAFGFMNYDVKPDIITMAKGIT-SAYLPLSATAVK-REIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIEN-- 340 (452)
T ss_dssp SSSSGGGGTTCCCSEEEECGGGG-TTSSCCEEEEEE-HHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHH--
T ss_pred cccchhhhcCCCCCEEeeccccc-CCCcceEEEEEC-HHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHh--
Confidence 311 11222222557999999 59 999999997 999888743 12346788999999999999985433
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCcc-----------HHH
Q 012785 340 KPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQE-----------IED 408 (456)
Q Consensus 340 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~-----------~~~ 408 (456)
++.+++.++..+..++.+.+.+++++.+...++.|. |+++.+..+ ...
T Consensus 341 -------~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~--------------~~~i~~~~~~~~~~~~~~~~~~~ 399 (452)
T 3n5m_A 341 -------ENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGL--------------LVGIELVNDKETKEPIDNDKIAS 399 (452)
T ss_dssp -------TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSS--------------CEEEEEEEETTTTEECCHHHHHH
T ss_pred -------ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEE--------------EEEEEEecCCcccCCCCHHHHHH
Confidence 234444444444445555554444444433344443 566665211 245
Q ss_pred HHHHHHhCCEEeecCCCCCC-CCCeEEEE--ecCChhHHHHHHHHHHhhhC
Q 012785 409 CESFLKGNKILTRSGKHFGF-SPKYVRIS--MLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 409 ~~~~l~~~gI~v~pg~~fg~-~~~~iRis--~~~~~e~i~~~l~~L~~~l~ 456 (456)
+.+.+.++||.++|+..|.. .++++||+ +..+++++++++++|+++++
T Consensus 400 ~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 450 (452)
T 3n5m_A 400 VVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAME 450 (452)
T ss_dssp HHHHHHHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 77788899999999987743 47899997 44599999999999998874
No 131
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.95 E-value=1.7e-26 Score=226.83 Aligned_cols=299 Identities=12% Similarity=0.061 Sum_probs=200.2
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
..+|+|+.+.+.++.+.... ... .. ..+ ...|.+..+ ..+|+++++++++. +++++++|++
T Consensus 3 ~~~i~~~~~~~~~p~~~~~~-a~~-~~-~~~---~~~y~~~~~-----~~~l~~~la~~~g~--------~~~~~~~~gt 63 (347)
T 1jg8_A 3 HMMIDLRSDTVTKPTEEMRK-AMA-QA-EVG---DDVYGEDPT-----INELERLAAETFGK--------EAALFVPSGT 63 (347)
T ss_dssp --CEECSCGGGCCCCHHHHH-HHH-TC-CCC---CGGGTCCHH-----HHHHHHHHHHHHTC--------SEEEEESCHH
T ss_pred ceEEEeccccCCCCCHHHHH-HHh-cC-CCC---CcccCCChH-----HHHHHHHHHHHhCC--------ceEEEecCcH
Confidence 46799999988776554333 211 11 111 124555455 48999999999863 3667777788
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh---hhhhcCCeEeeec-----cCcccccc---C------CCeEEEEc
Q 012785 174 QLFQAALYALSSQDASEPISVVSAAPYYSSYPS---ITDCVKSRLYKWA-----GDAKRFNK---D------GPYIELVT 236 (456)
Q Consensus 174 ~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~---~~~~~g~~~~~~~-----~d~~~l~~---~------~~~~i~v~ 236 (456)
+++.+++.++.++|| +|++++|+|..... .++..|++++.+. +|.+.++. . ++++|+++
T Consensus 64 ~a~~~~~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~ 139 (347)
T 1jg8_A 64 MGNQVSIMAHTQRGD----EVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIE 139 (347)
T ss_dssp HHHHHHHHHHCCTTC----EEEEETTCHHHHSSTTHHHHHTCCEEEEECEETTEECHHHHHHHSCCSCTTSCCEEEEEEE
T ss_pred HHHHHHHHHhcCCCC----EEEEcCcchhhhccccchhhccCeEEEEecCCCCccCHHHHHHHhccccccccCceEEEEe
Confidence 999999999999999 99999999865332 5667788887662 24444422 1 47899999
Q ss_pred CCCCCC-cccch--------HHhhhcCcEEEeeecCCCC-----CCC--CCCCCCCCcEEEecCccccCCCCceEEE-EE
Q 012785 237 SPNNPD-GSVRQ--------SVVNRSGGILVHDLAYYWP-----QYT--SITYPADHDLMLFTVSKSTGHAGTRIGW-AL 299 (456)
Q Consensus 237 ~P~NPt-G~~~~--------~l~~~~~~~iI~De~y~~~-----~~~--~~~~~~~~~i~i~S~SK~~g~~G~RiG~-l~ 299 (456)
+||||| |.+++ ++|+++|+++|+|++|... ... ++.... +.++.|+||.++.+ +|| ++
T Consensus 140 ~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~--d~~~~s~sK~l~~~---~G~~~~ 214 (347)
T 1jg8_A 140 NTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYA--DSVMFCLSKGLCAP---VGSVVV 214 (347)
T ss_dssp SSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTC--SEEEEESSSTTCCS---SCEEEE
T ss_pred ccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccc--cEEEEecccccCCC---ceEEEE
Confidence 999999 99876 2788999999999987320 111 111122 34556899998743 685 55
Q ss_pred EeCHHHHHHHHHHHhhccC--cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 012785 300 VKDMEVAKKMTKYIELNTI--GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVP 377 (456)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~--~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~ 377 (456)
. ++++++++...+..... ..+...+.++...|+. . .+.++ + ..++++.+.+.|+++ ++.+.
T Consensus 215 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~--------~~~~~---~-~~~~~~~l~~~L~~~-~~~~~ 277 (347)
T 1jg8_A 215 G-DRDFIERARKARKMLGGGMRQAGVLAAAGIIALTK---M--------VDRLK---E-DHENARFLALKLKEI-GYSVN 277 (347)
T ss_dssp E-CHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHH---S--------STTHH---H-HHHHHHHHHHHHHHH-TCBCC
T ss_pred c-CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHH---H--------HHHHH---H-HHHHHHHHHHHHHhc-Cceec
Confidence 5 48898888776543332 2345566666666652 1 11222 2 234667788888876 34331
Q ss_pred -CCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC--ChhHHHHHHHHH
Q 012785 378 -ELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD--RDENYNLFVQRL 451 (456)
Q Consensus 378 -~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l~~L 451 (456)
.+ +.++|+|++++. +.+.+.+.|.++||.++++. .+++|+++.. +++++++++++|
T Consensus 278 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~-----~~~iRl~~~~~~~~e~i~~~~~~l 339 (347)
T 1jg8_A 278 PED-------------VKTNMVILRTDNLKVNAHGFIEALRNSGVLANAVS-----DTEIRLVTHKDVSRNDIEEALNIF 339 (347)
T ss_dssp GGG-------------CCSSEEEEECTTSSSCHHHHHHHHHHHTEECEEEE-----TTEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCC-------------CcceEEEEEcccccCCHHHHHHHHHHCCCEEecCC-----CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 12 233479998862 46677777888999999853 5789999853 899999999999
Q ss_pred Hhhh
Q 012785 452 SKIL 455 (456)
Q Consensus 452 ~~~l 455 (456)
++++
T Consensus 340 ~~~l 343 (347)
T 1jg8_A 340 EKLF 343 (347)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 132
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.95 E-value=1.4e-26 Score=228.44 Aligned_cols=275 Identities=13% Similarity=0.044 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCH-HHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGS-TQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD 221 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~-~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d 221 (456)
.++++.++++++. . ++++|++|+|+ ++++.+++..+..+|+. ...|+++.++|.. ...++..| +++.++.|
T Consensus 51 ~~l~~~la~~~g~---~--~~~~v~~~~g~gt~al~~~~~~l~~~~~~-g~~vi~~~~~~~~-~~~~~~~g-~~~~v~~~ 122 (360)
T 1w23_A 51 EQAQNLLRELLQI---P--NDYQILFLQGGASLQFTMLPMNLLTKGTI-GNYVLTGSWSEKA-LKEAKLLG-ETHIAAST 122 (360)
T ss_dssp HHHHHHHHHHHTC---C--TTEEEEEESSHHHHHHHHHHHHHCCTTCE-EEEEECSHHHHHH-HHHHHTTS-EEEEEEEC
T ss_pred HHHHHHHHHHhCC---C--CCceEEEECCcchHHHHHHHHHhcCCCCc-ccEEEecchhHHH-HHHHHHhC-CeEEeecc
Confidence 4566666666642 2 24699999999 99999999999876430 0056666666654 34466778 88776653
Q ss_pred -------cccccc----CCCeEEEEcCCCCCCcccchHHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCccccCC
Q 012785 222 -------AKRFNK----DGPYIELVTSPNNPDGSVRQSVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGH 290 (456)
Q Consensus 222 -------~~~l~~----~~~~~i~v~~P~NPtG~~~~~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g~ 290 (456)
.+.++. .++++|++++||||||.+++++++++|+++|+|++|..... ++. ..+.+++++|+||.+|+
T Consensus 123 ~~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG~~~~~i~~~~~~~li~D~a~~~~~~-~~~-~~~~di~~~s~sK~~~~ 200 (360)
T 1w23_A 123 KANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQNFPEINHAPLIADMSSDILSR-PLK-VNQFGMIYAGAQKNLGP 200 (360)
T ss_dssp GGGTSCSCCCGGGCCCCTTEEEEEEESEETTTTEECSSCCCCCSSCEEEECTTTTTSS-CCC-GGGCSEEEEETTTTTSC
T ss_pred cccCcCCccchHhhccCCCCCEEEEeCCCCCcceecccccccCCceEEEechhhcCCC-CcC-cccCCEEEEEcccccCC
Confidence 344443 25789999999999999988888899999999999985332 111 11125899999999997
Q ss_pred CCceEEEEEEeCHHHHHHHHHHH------------hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHH
Q 012785 291 AGTRIGWALVKDMEVAKKMTKYI------------ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMS 358 (456)
Q Consensus 291 ~G~RiG~l~~~~~~~~~~l~~~~------------~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~ 358 (456)
+| +||++++ +++++++.... .....+.+...+.++.++++.+.+ ...+++.+++++
T Consensus 201 ~G--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~---------~~~~~~~~~~~~ 268 (360)
T 1w23_A 201 SG--VTVVIVK-KDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKD---------LGGAEAIAKQNE 268 (360)
T ss_dssp TT--CEEEEEE-HHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHH---------TTHHHHHHHHHH
T ss_pred CC--cEEEEEc-HHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHH---------hcCHHHHHHHHH
Confidence 77 9999997 77776554421 011134456666666676763211 115788899999
Q ss_pred HHHHHHHHHHHhcCCc-ccc-CC--CCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCCCCCe
Q 012785 359 TRWKQLRMAVQKSGLF-SVP-EL--PSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGFSPKY 432 (456)
Q Consensus 359 ~~~~~l~~~L~~~~~~-~~~-~~--~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~ 432 (456)
++++.+.+.|++++.+ ... .+ .+++ ++|+.+++ +...+.+.|.++||.++||..+ +++
T Consensus 269 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~---~~~ 332 (360)
T 1w23_A 269 EKAKIIYDTIDESNGFYVGHAEKGSRSLM-------------NVTFNLRNEELNQQFLAKAKEQGFVGLNGHRS---VGG 332 (360)
T ss_dssp HHHHHHHHHHHTTTTSSEESSCGGGBCSS-------------EEEEECSSHHHHHHHHHHHHHTTEESCBCCTT---TCS
T ss_pred HHHHHHHHHHHHccCcccccCCchhccCc-------------EEEEEcCCCccHHHHHHHHHHCCeeeecCCCC---CCe
Confidence 9999999999987633 321 12 1222 78998875 3455667788899999998764 678
Q ss_pred EEEEecC--ChhHHHHHHHHHHhhh
Q 012785 433 VRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 433 iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+||++.. +++++++++++|++++
T Consensus 333 iRis~~~~~~~~~i~~~~~~l~~~~ 357 (360)
T 1w23_A 333 CRASIYNAVPIDACIALRELMIQFK 357 (360)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHHHHHHHH
Confidence 9999974 8899999999999875
No 133
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.95 E-value=1.4e-26 Score=234.10 Aligned_cols=254 Identities=13% Similarity=0.092 Sum_probs=182.2
Q ss_pred CceEEEccCHHHHHHHHHHHhcC-------CCCCCCcEEEEeCCCCCChhhhh-hhcCCe------------Eeeec-cC
Q 012785 163 NHHIVVGTGSTQLFQAALYALSS-------QDASEPISVVSAAPYYSSYPSIT-DCVKSR------------LYKWA-GD 221 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~-------~gd~~~~~Vlv~~P~y~~~~~~~-~~~g~~------------~~~~~-~d 221 (456)
.++|++|+|++++++++++++.. +|+. +|++.+|+|+++...+ ...|.+ +..++ .|
T Consensus 114 ~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~---~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d 190 (420)
T 2pb2_A 114 AERVLFMNSGTEANETAFKLARHYACVRHSPFKT---KIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFND 190 (420)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCC---EEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTTC
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCC---EEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCCC
Confidence 36899999999999999998865 5532 8999999999876543 344543 33333 25
Q ss_pred cccccc---CCCeEEEEcCCCCCCcc-cch--------HHhhhcCcEEEeeecCCCCCCCCCC-----CCCCCcEEEecC
Q 012785 222 AKRFNK---DGPYIELVTSPNNPDGS-VRQ--------SVVNRSGGILVHDLAYYWPQYTSIT-----YPADHDLMLFTV 284 (456)
Q Consensus 222 ~~~l~~---~~~~~i~v~~P~NPtG~-~~~--------~l~~~~~~~iI~De~y~~~~~~~~~-----~~~~~~i~i~S~ 284 (456)
.+.++. .++++|+++++|||+|. +++ ++|+++|+++|+||+|.+..+.+.. .....+++ ||
T Consensus 191 ~~~le~~i~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~dii--t~ 268 (420)
T 2pb2_A 191 LHAVKAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDIL--TS 268 (420)
T ss_dssp HHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EE
T ss_pred HHHHHHHhccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeE--Ee
Confidence 565543 36788888888888885 344 3899999999999999864433211 01112233 78
Q ss_pred ccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 012785 285 SKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQL 364 (456)
Q Consensus 285 SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 364 (456)
||.++ +|+|+||++++ +++++.+.......+++.++++|.++.+.|+.+.+ +...++++++++.+
T Consensus 269 sK~l~-~G~~iG~~~~~-~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~-------------~~~~~~~~~~~~~l 333 (420)
T 2pb2_A 269 AKALG-GGFPVSAMLTT-QEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINT-------------PEVLQGIHTKRQQF 333 (420)
T ss_dssp CGGGG-TTSCCEEEEEC-HHHHTTCC----CCEECCCHHHHHHHHHHHHHHSS-------------HHHHHHHHHHHHHH
T ss_pred ccccc-CCCceEEEEEh-HHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHH
Confidence 99999 99999999997 88888776654556788999999999998885321 24566777888888
Q ss_pred HHHHHhc----CCccccCCCCcccccccccCCCCCceEEeecCc----cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEE
Q 012785 365 RMAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----EIEDCESFLKGNKILTRSGKHFGFSPKYVRIS 436 (456)
Q Consensus 365 ~~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis 436 (456)
.+.|+++ +.+...++ .++|+|++++. +...+.+.|.++||.++|+. ++++||+
T Consensus 334 ~~~L~~~~~~~~~~~~~~~--------------~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~~-----~~~iRl~ 394 (420)
T 2pb2_A 334 VQHLQAIDEQFDIFSDIRG--------------MGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNAG-----ADVMRFA 394 (420)
T ss_dssp HHHHHHHHHHHCCEEEEEE--------------ETTEEEEEECGGGTTCHHHHHHHHHHTTEECEESS-----TTEEEEC
T ss_pred HHHHHHHHhcCCCeEEEEe--------------cceEEEEEECCCchHHHHHHHHHHHHCCCEEEeCC-----CCEEEEE
Confidence 8888764 22221222 23378888753 35678888888999999963 6799999
Q ss_pred ec--CChhHHHHHHHHHHhhh
Q 012785 437 ML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 437 ~~--~~~e~i~~~l~~L~~~l 455 (456)
+. .+++++++++++|++++
T Consensus 395 ~~~~~t~eei~~~~~~l~~~l 415 (420)
T 2pb2_A 395 PSLVVEEADIHEGMQRFAQAV 415 (420)
T ss_dssp CCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 54 59999999999999875
No 134
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.95 E-value=3.6e-27 Score=236.08 Aligned_cols=271 Identities=14% Similarity=0.127 Sum_probs=192.9
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc--CCCCCCCcEEEEeCCCCCChh-hhhhhcCCe----
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS--SQDASEPISVVSAAPYYSSYP-SITDCVKSR---- 214 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~--~~gd~~~~~Vlv~~P~y~~~~-~~~~~~g~~---- 214 (456)
..+++++++++++. .+++|++|+|+++++.++++++. .+++ +|++.+|+|+... ..+...|.+
T Consensus 89 ~~~l~~~la~~~~~------~~~~v~~~~gg~~a~~~al~~~~~~~~~~----~vi~~~~~y~~~~~~~~~~~g~~~~~~ 158 (395)
T 1vef_A 89 RGEFYRTLTAILPP------ELNRVFPVNSGTEANEAALKFARAHTGRK----KFVAAMRGFSGRTMGSLSVTWEPKYRE 158 (395)
T ss_dssp HHHHHHHHHHTSCT------TEEEEEEESSHHHHHHHHHHHHHHHHSCC----EEEEETTCCCCSSHHHHHTCCCHHHHG
T ss_pred HHHHHHHHHHhcCC------CcCEEEEcCcHHHHHHHHHHHHHHHhCCC----eEEEEcCCcCCCchhhhhhcCCccccc
Confidence 36677777776532 35799999999999999998774 5677 8999999998654 455556664
Q ss_pred --------Eeeec-cCcccccc---CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCC--
Q 012785 215 --------LYKWA-GDAKRFNK---DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSI-- 271 (456)
Q Consensus 215 --------~~~~~-~d~~~l~~---~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~-- 271 (456)
+..++ .|.+.++. .++++++++.++||||.+++ ++|+++|+++|+||+|.+..+.+.
T Consensus 159 ~~~p~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~ 238 (395)
T 1vef_A 159 PFLPLVEPVEFIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRF 238 (395)
T ss_dssp GGCSCSSCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred ccCCCCCCeeEeCCCcHHHHHHHhccCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchh
Confidence 33333 36665543 35678877666899998654 278999999999999995332211
Q ss_pred C---CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchh
Q 012785 272 T---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDEC 348 (456)
Q Consensus 272 ~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~ 348 (456)
. .....+++ ||||.++ +|+|+||++++ +++++.+.......+++.+++.|.++.++|+.+. +
T Consensus 239 ~~~~~~~~~d~~--s~sK~~~-~g~~~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~-----------~ 303 (395)
T 1vef_A 239 AFEHFGIVPDIL--TLAKALG-GGVPLGVAVMR-EEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLE-----------R 303 (395)
T ss_dssp THHHHTCCCSEE--EECGGGG-TTSSCEEEEEE-HHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHH-----------H
T ss_pred HhhhcCCCCCEE--EEccccc-CCCceEEEEeh-HHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHH-----------h
Confidence 1 01111232 8999999 59999999997 7787776553334567789999999888887321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHH-hCCEEeecCCCCC
Q 012785 349 FFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLK-GNKILTRSGKHFG 427 (456)
Q Consensus 349 ~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~-~~gI~v~pg~~fg 427 (456)
+...++++++++.+.+.|++++. .+.. ..++.++|+|++++.+.+.+.+.|. ++||.++|+
T Consensus 304 --~~~~~~~~~~~~~l~~~l~~~~~-~~~~-----------~~~~~g~~~~~~~~~~~~~l~~~l~~~~gi~v~~~---- 365 (395)
T 1vef_A 304 --TRLWERAAELGPWFMEKLRAIPS-PKIR-----------EVRGMGLMVGLELKEKAAPYIARLEKEHRVLALQA---- 365 (395)
T ss_dssp --HTTHHHHHHHHHHHHHHHHTSCC-TTEE-----------EEEEETTEEEEEESSCSHHHHHHHHHHHCEECEES----
T ss_pred --CCHHHHHHHHHHHHHHHHHHhhc-CceE-----------EEEEEEEEEEEEEcChHHHHHHHHHHHCCeEEecC----
Confidence 34567788888999999987642 1100 0012334889998754566777777 899999995
Q ss_pred CCCCeEEEEec--CChhHHHHHHHHHHhhhC
Q 012785 428 FSPKYVRISML--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 428 ~~~~~iRis~~--~~~e~i~~~l~~L~~~l~ 456 (456)
+++++||+++ .+++++++++++|+++++
T Consensus 366 -~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 395 (395)
T 1vef_A 366 -GPTVIRFLPPLVIEKEDLERVVEAVRAVLA 395 (395)
T ss_dssp -STTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred -CCCEEEEeCCCCCCHHHHHHHHHHHHHHhC
Confidence 3689999875 489999999999999874
No 135
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.95 E-value=4e-26 Score=224.62 Aligned_cols=306 Identities=12% Similarity=0.097 Sum_probs=202.3
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
+.+|||+.+.+..+.+. +.+..... . .+ ....|+.... ..++++.++++++ ++.+|++|+|++
T Consensus 7 ~~~id~~~~~~~~~~~~-v~~a~~~~-~-~~--~~~~~~~~~~-----~~~l~~~la~~~g-------~~~~v~~~~~gt 69 (356)
T 1v72_A 7 PPALGFSSDNIAGASPE-VAQALVKH-S-SG--QAGPYGTDEL-----TAQVKRKFCEIFE-------RDVEVFLVPTGT 69 (356)
T ss_dssp CCCCBCSCGGGCCCCHH-HHHHHHHT-T-SS--CCCSTTCSHH-----HHHHHHHHHHHHT-------SCCEEEEESCHH
T ss_pred CceEeeccCCccCCCHH-HHHHHHhh-c-cC--cccccccchH-----HHHHHHHHHHHhC-------CCCcEEEeCCcc
Confidence 46789988766554443 33322111 1 11 0123433222 2556666666553 134799999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh--hhhc--CCeEeeecc-----Ccccccc-C----------CCeEE
Q 012785 174 QLFQAALYALSSQDASEPISVVSAAPYYSSYPSI--TDCV--KSRLYKWAG-----DAKRFNK-D----------GPYIE 233 (456)
Q Consensus 174 ~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~--~~~~--g~~~~~~~~-----d~~~l~~-~----------~~~~i 233 (456)
+++.+++.++.++|| +|+++.|+|...... +... |.+++.++. |.+.++. . ++++|
T Consensus 70 ~a~~~al~~~~~~gd----~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~~i~~~~~~~~~~~~~v 145 (356)
T 1v72_A 70 AANALCLSAMTPPWG----NIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACV 145 (356)
T ss_dssp HHHHHHHHTSCCTTE----EEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEE
T ss_pred HHHHHHHHHhcCCCC----EEEEcCccchhhhhchHHHHHhCCcEEEEecCCCCeEcHHHHHHHhhhcchhhccCCceEE
Confidence 999999999999999 999999998876655 6777 998887664 4444433 1 46889
Q ss_pred EEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCC-----CCCCCCC--CCCCcEEEecCccccCCCCceEE--
Q 012785 234 LVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWP-----QYTSITY--PADHDLMLFTVSKSTGHAGTRIG-- 296 (456)
Q Consensus 234 ~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~-----~~~~~~~--~~~~~i~i~S~SK~~g~~G~RiG-- 296 (456)
++++||| ||.+++ ++|+++|+++|+|++|.+. ...+... ..+..+++.|+||. | .|+|
T Consensus 146 ~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g---~~~G~g 220 (356)
T 1v72_A 146 SITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-G---VLAAEA 220 (356)
T ss_dssp EEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-T---CSSCEE
T ss_pred EEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-C---CcCccE
Confidence 9999987 999877 2789999999999999631 1111111 01334667799997 4 3566
Q ss_pred EEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 012785 297 WALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSV 376 (456)
Q Consensus 297 ~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~ 376 (456)
|++++ +++++++......... .....+.++...++.+.+ +......++++++++.+.+.|++++++.+
T Consensus 221 ~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 288 (356)
T 1v72_A 221 IVLFN-TSLATEMSYRRKRAGH-LSSKMRFLSAQIDAYLTD----------DLWLRNARKANAAAQRLAQGLEGLGGVEV 288 (356)
T ss_dssp EEESS-GGGHHHHHHHHHHTTC-CCSSTHHHHHHHHHHTST----------THHHHHHHHHHHHHHHHHHHHTTCTTEEE
T ss_pred EEEEC-HHHHhhHHHHhhccCc-hhhhHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHhhCCCcEE
Confidence 88775 8888887765432211 111122222233332212 23344567778888999999988655655
Q ss_pred cCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC--ChhHHHHHHHHHHhh
Q 012785 377 PELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD--RDENYNLFVQRLSKI 454 (456)
Q Consensus 377 ~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~~ 454 (456)
..|.+++ |+|++++ +.+.+.|.++||.++||. |+ ++++|+++.. +++++++++++|+++
T Consensus 289 ~~~~~~~-------------~~~~~~~---~~~~~~l~~~gi~v~~g~-~~--~~~iRi~~~~~~~~~~i~~~~~~l~~~ 349 (356)
T 1v72_A 289 LGGTEAN-------------ILFCRLD---SAMIDALLKAGFGFYHDR-WG--PNVVRFVTSFATTAEDVDHLLNQVRLA 349 (356)
T ss_dssp ESCCCSS-------------EEEEEEC---HHHHHHHHHTTCBCBCSS-SS--TTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred ccCCCcc-------------EEEEEcC---HHHHHHHHhcCeEEeccc-cC--CCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4444444 8999885 256677788999999987 65 7899999753 889999999999987
Q ss_pred hC
Q 012785 455 LS 456 (456)
Q Consensus 455 l~ 456 (456)
++
T Consensus 350 l~ 351 (356)
T 1v72_A 350 AD 351 (356)
T ss_dssp C-
T ss_pred HH
Confidence 63
No 136
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.94 E-value=4.1e-26 Score=229.30 Aligned_cols=283 Identities=14% Similarity=0.154 Sum_probs=197.7
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh----hhhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS----ITDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~----~~~~~g~~~~~ 217 (456)
..+|+++++++++. ++.|++++|+ +++.+++. ++++|| +|++++|+|+.... .++..|.+++.
T Consensus 69 ~~~l~~~la~~~g~-------~~~i~~~sG~-~ai~~~~~-l~~~gd----~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~ 135 (403)
T 3cog_A 69 RNCLEKAVAALDGA-------KYCLAFASGL-AATVTITH-LLKAGD----QIICMDDVYGGTNRYFRQVASEFGLKISF 135 (403)
T ss_dssp HHHHHHHHHHHHTC-------SEEEEESCHH-HHHHHHHT-TSCTTC----EEEEESSCCHHHHHHHHHTGGGGTCEEEE
T ss_pred HHHHHHHHHHHhCC-------CcEEEECCHH-HHHHHHHH-HhCCCC----EEEEeCCCcchHHHHHHHHHHHcCCEEEE
Confidence 37999999999964 3678888875 89999998 889999 99999999997443 34678999988
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcC-cEEEeeecCCCCCC-CCCCCCCCCcEEEecCcc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSG-GILVHDLAYYWPQY-TSITYPADHDLMLFTVSK 286 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~-~~iI~De~y~~~~~-~~~~~~~~~~i~i~S~SK 286 (456)
++. |.+.++. .++++|++++|+||||.+++ ++|+++| +++|+|++|..+.+ .++ ..+.+++++|+||
T Consensus 136 v~~~d~~~l~~~i~~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~--~~~~div~~S~sK 213 (403)
T 3cog_A 136 VDCSKIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPL--ALGADISMYSATK 213 (403)
T ss_dssp ECTTSHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTT--TTTCSEEEEETTT
T ss_pred ECCCCHHHHHHhcCcCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCCcc--ccCCeEEEEcChh
Confidence 876 5555543 36799999999999999987 4889999 99999999997533 233 2467999999999
Q ss_pred ccCCCC-ceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 287 STGHAG-TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 287 ~~g~~G-~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
.++.+| +|+||+++++++++++++..........+++.+.++...++. +....+...++...+.
T Consensus 214 ~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~---------------l~~r~~~~~~n~~~l~ 278 (403)
T 3cog_A 214 YMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKT---------------LHVRMEKHFKNGMAVA 278 (403)
T ss_dssp TTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHH
T ss_pred hccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhH---------------HHHHHHHHHHHHHHHH
Confidence 998766 589999996689999998877656677889988888877762 2223444555666667
Q ss_pred HHHHhcCCccccCCC-----CcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeec---CC----------CC-
Q 012785 366 MAVQKSGLFSVPELP-----SQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRS---GK----------HF- 426 (456)
Q Consensus 366 ~~L~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~p---g~----------~f- 426 (456)
+.|++.+.+...-.+ .++ .+........++++.+.+++..+.+.+.+.+.||.++. |. .+
T Consensus 279 ~~l~~~~~v~~~~~~~L~~~p~~-~~~~~~~~~~g~~~~~~l~~~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~~ 357 (403)
T 3cog_A 279 QFLESNPWVEKVIYPGLPSHPQH-ELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTH 357 (403)
T ss_dssp HHHHTCTTEEEEECTTSTTSTTH-HHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCSSSSCEEECTTTTTT
T ss_pred HHHhcCCCEEEEECCCCCCCCcH-HHHHhcCCCCceEEEEEecCCHHHHHHHHHhCCcceEccCCCCcceeeeccccccc
Confidence 777665321110000 011 00000001224455557765556777888888886543 21 11
Q ss_pred -----------CCCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 427 -----------GFSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 427 -----------g~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
|..+++||||++. +++.++.+.+.|++++
T Consensus 358 ~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~ 399 (403)
T 3cog_A 358 ASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAH 399 (403)
T ss_dssp TTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 2336899999976 3455666666666554
No 137
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.94 E-value=3.8e-26 Score=223.07 Aligned_cols=280 Identities=10% Similarity=0.113 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh----hhcCCeEeeec
Q 012785 144 EFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT----DCVKSRLYKWA 219 (456)
Q Consensus 144 ~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~----~~~g~~~~~~~ 219 (456)
+|+++++++++. ++.|++++| ++++++++.++..+|| +|++++|+|+.+...+ +..|.++..++
T Consensus 2 ~l~~~la~~~g~-------~~~i~~~sG-~~a~~~~~~~~~~~g~----~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 69 (331)
T 1pff_A 2 ALEGKIAKLEHA-------EACAATASG-MGAIAASVWTFLKAGD----HLISDDCLYGCTHALFEHQLRKFGVEVDFID 69 (331)
T ss_dssp HHHHHHHHHHTC-------SEEEEESSH-HHHHHHHHHHHCCTTC----EEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred hHHHHHHHHhCC-------CeEEEeCCh-HHHHHHHHHHhcCCCC----EEEEcCCCcchHHHHHHHHHHhcCCEEEEeC
Confidence 689999999864 356666666 7999999999999999 9999999999987665 44788888776
Q ss_pred c-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhh-cCcEEEeeecCCCCCC-CCCCCCCCCcEEEecCcccc
Q 012785 220 G-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNR-SGGILVHDLAYYWPQY-TSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 220 ~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~-~~~~iI~De~y~~~~~-~~~~~~~~~~i~i~S~SK~~ 288 (456)
. |.+.++. .+++++++++||||||.+++ ++|++ +|+++|+|++|....+ .++ ..+++++++|+||.+
T Consensus 70 ~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~--~~~~d~~~~s~~K~~ 147 (331)
T 1pff_A 70 MAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPL--DLGVDIVVHSATKYI 147 (331)
T ss_dssp TTSTTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGG--GGTCSEEEEETTTTT
T ss_pred CCCHHHHHHhhcCCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChh--hcCCcEEEEECcccc
Confidence 4 5555543 36789999999999999987 48999 9999999999984221 222 346899999999999
Q ss_pred CCCCce-EEEEEEeCH-HHHHHHHHHHhh-ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 289 GHAGTR-IGWALVKDM-EVAKKMTKYIEL-NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 289 g~~G~R-iG~l~~~~~-~~~~~l~~~~~~-~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
+.+|.| +||++++ + +++++++..... .+.+.+++.+.++...++. +....+...++.+.+.
T Consensus 148 ~~~~~r~~G~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~---------------~~~~~~~~~~~~~~~~ 211 (331)
T 1pff_A 148 NGHTDVVAGLVCSR-ADIIAKVKSQGIKDITGAIISPHDAWLITRGTLT---------------LDMRVKRAAENAQKVA 211 (331)
T ss_dssp SSSSSCCCEEEEEC-HHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEEeC-cHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcch---------------HHHHHHHHHHHHHHHH
Confidence 999999 8999997 6 888888877654 4567888888877666652 2223344555566666
Q ss_pred HHHHhcCCcccc---C--CCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCC---------------
Q 012785 366 MAVQKSGLFSVP---E--LPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKH--------------- 425 (456)
Q Consensus 366 ~~L~~~~~~~~~---~--~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~--------------- 425 (456)
+.|++.+.+... . ...++ .+........++++.+.++ +.+.+.+.+.++||.+++.+.
T Consensus 212 ~~l~~~~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~ 289 (331)
T 1pff_A 212 EFLHEHKAVKKVYYPGLPDHPGH-EIAKKQMKMFGSMIAFDVD-GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTH 289 (331)
T ss_dssp HHHHHCTTCCCEECTTSTTSTTH-HHHHHHCSSCCSEEEEECS-SHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTS
T ss_pred HHHHcCCCeeEEECCCCCCCccH-HHHHhhCCCCceEEEEEEC-CHHHHHHHHHhCCCceeccCCCCcceeeecchhhcc
Confidence 666654211100 0 00011 0000000123456777776 566788899999998876531
Q ss_pred ----------CCCCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 426 ----------FGFSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 426 ----------fg~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+|..++++|||++. ++++++.+++.|++++
T Consensus 290 ~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~~ 331 (331)
T 1pff_A 290 AGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLVL 331 (331)
T ss_dssp TTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC-
T ss_pred cccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHhC
Confidence 22336899999975 6788899988887753
No 138
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.94 E-value=2.6e-26 Score=233.33 Aligned_cols=320 Identities=8% Similarity=-0.014 Sum_probs=205.4
Q ss_pred CCCCeEEecCCCCC--CC-chhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 92 GGERIINVDHGDPT--MY-EKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~p~--~~-~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
.++..+|+..+.+. +. .++.+.++.. ..+... ..|+...| ..++++++++++..... ...+++|++
T Consensus 41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~-~~~~~~----~~~~~~~~-----~~~~~~~l~~~la~~~~-~~~~~~v~~ 109 (439)
T 3dxv_A 41 NGRELIDLSGAWGAASLGYGHPAIVAAVS-AAAANP----AGATILSA-----SNAPAVTLAERLLASFP-GEGTHKIWF 109 (439)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHH-HHHHSC----SCSCSSSS-----EEHHHHHHHHHHHHTTT-CTTTEEEEE
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHH-HHHHhc----cCcccccc-----CCHHHHHHHHHHHHhCC-CCCCCEEEE
Confidence 45678999988873 22 3444443322 112111 23443344 35677777777644211 111269999
Q ss_pred ccCHHHHHHHHHHHh--cCCCCCCCcEEEEeCCCCCChhhhhhhcCCe-----------------Eeeecc---------
Q 012785 169 GTGSTQLFQAALYAL--SSQDASEPISVVSAAPYYSSYPSITDCVKSR-----------------LYKWAG--------- 220 (456)
Q Consensus 169 t~G~~~al~~~~~~l--~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~-----------------~~~~~~--------- 220 (456)
|+|+++++..+++++ ..+++ +|++.+|+|+++...+...+.. .++++.
T Consensus 110 ~~ggsea~~~al~~~~~~~~~~----~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (439)
T 3dxv_A 110 GHSGSDANEAAYRAIVKATGRS----GVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDA 185 (439)
T ss_dssp ESSHHHHHHHHHHHHHHHHSCC----EEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCC----EEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHH
Confidence 999999999999985 23555 8999999998877665544321 122221
Q ss_pred Cccccc-------cCCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCC--C-CCCCCcEEE
Q 012785 221 DAKRFN-------KDGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSI--T-YPADHDLML 281 (456)
Q Consensus 221 d~~~l~-------~~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~--~-~~~~~~i~i 281 (456)
|.+.++ ..+++++++++++||+|.+.+ ++|+++|+++|+||+|.+..+.+. . ...+...-+
T Consensus 186 d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di 265 (439)
T 3dxv_A 186 ILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDI 265 (439)
T ss_dssp HHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSE
T ss_pred HHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCE
Confidence 344442 235678888777888888755 279999999999999986433221 1 111111223
Q ss_pred ecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHH
Q 012785 282 FTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRW 361 (456)
Q Consensus 282 ~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 361 (456)
.||||.++ +|+|+||++++ +++++.+.......++ .++++|.++.++|+.+.+ ++++++.++..+..+
T Consensus 266 ~s~sK~~~-~G~riG~~~~~-~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~---------~~~~~~~~~~~~~~~ 333 (439)
T 3dxv_A 266 LVLGKGLG-GGLPLSAVIAP-AEILDCASAFAMQTLH-GNPISAAAGLAVLETIDR---------DDLPAMAERKGRLLR 333 (439)
T ss_dssp EEECGGGG-TTSCCEEEEEE-HHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHH---------TTHHHHHHHHHHHHH
T ss_pred EEEcchhc-CCcceEEEEEC-HHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHH
Confidence 39999999 79999999997 8888887766545677 899999999998885432 223444444444444
Q ss_pred HHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeec--------Cc--cHHHHHHHHHhCCEEeecCCCCCCCCC
Q 012785 362 KQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKC--------EQ--EIEDCESFLKGNKILTRSGKHFGFSPK 431 (456)
Q Consensus 362 ~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~--------~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~ 431 (456)
+.+.+.+..++.+...++.| +|+|+.+ +. ....+.+.+.++||.++|+.. .++
T Consensus 334 ~~l~~~~~~~~~~~~~~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~ 396 (439)
T 3dxv_A 334 DGLSELAKRHPLIGDIRGRG--------------LACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGM---NGN 396 (439)
T ss_dssp HHHHHHHHHCTTEEEEEEET--------------TEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEEST---TSC
T ss_pred HHHHHHHHhCCCeEEEEEEE--------------EEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCC---CCC
Confidence 44444444444333333333 3677766 22 245677778888999999753 358
Q ss_pred eEEEEec--CChhHHHHHHHHHHhhh
Q 012785 432 YVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 432 ~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
++||+++ .+++++++++++|++++
T Consensus 397 ~iRi~~~~~~t~e~i~~~l~~l~~~l 422 (439)
T 3dxv_A 397 VLEFTPPLTITETDIHKALDLLDRAF 422 (439)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 9999754 48999999999999876
No 139
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.94 E-value=3.3e-26 Score=233.58 Aligned_cols=321 Identities=12% Similarity=0.038 Sum_probs=208.5
Q ss_pred CCCCeEEecCCC--CCC-CchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 92 GGERIINVDHGD--PTM-YEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~--p~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
.++..||+..+. ..+ ..++.+.++.. ..+... ..|....+ ..+++.++++++...-.. ...++|++
T Consensus 62 ~G~~ylD~~~~~~~~~lGh~~p~v~~A~~-~~~~~~----~~~~~~~~-----~~~~~~~la~~l~~~~~~-~~~~~v~~ 130 (453)
T 4ffc_A 62 DGNSFIDLGAGIAVTTVGASHPAVAAAIA-DQATHF----THTCFMVT-----PYEQYVQVAELLNALTPG-DHDKRTAL 130 (453)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHH-HHHHHC----SCCTTTTS-----CCHHHHHHHHHHHHHSSC-SSCEEEEE
T ss_pred CCCEEEEcCCCcccCcCCCCCHHHHHHHH-HHHHhc----cccccCcC-----CCHHHHHHHHHHHHhCCC-CCCcEEEE
Confidence 456788887763 222 22344443222 112111 23443333 356666666666432111 12468999
Q ss_pred ccCHHHHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhhcCC----------------eEeeecc---C------
Q 012785 169 GTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCVKS----------------RLYKWAG---D------ 221 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~~g~----------------~~~~~~~---d------ 221 (456)
|+|++++++.+++.+.. .++ +|++.+|+|+++...+...+. ..++++. |
T Consensus 131 ~~sGseA~~~alk~a~~~~g~~----~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 206 (453)
T 4ffc_A 131 FNSGAEAVENAIKVARLATGRP----AVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTG 206 (453)
T ss_dssp ESSHHHHHHHHHHHHHHHHCCC----EEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCH
T ss_pred eCcHHHHHHHHHHHHHHhcCCC----EEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccch
Confidence 99999999999987753 445 899999999988876665532 2223321 2
Q ss_pred -------cccccc---CCCeEEEEcCCCCCCcccc--h--------HHhhhcCcEEEeeecCCCCCCCCCCC---CCCCc
Q 012785 222 -------AKRFNK---DGPYIELVTSPNNPDGSVR--Q--------SVVNRSGGILVHDLAYYWPQYTSITY---PADHD 278 (456)
Q Consensus 222 -------~~~l~~---~~~~~i~v~~P~NPtG~~~--~--------~l~~~~~~~iI~De~y~~~~~~~~~~---~~~~~ 278 (456)
.+.++. .+..++++++|+||+|.+. + ++|+++|+++|+||+|.+..+.+... ..+..
T Consensus 207 ~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~ 286 (453)
T 4ffc_A 207 EEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIV 286 (453)
T ss_dssp HHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCC
Confidence 122222 2345666678888876433 2 37999999999999998754433211 11223
Q ss_pred EEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHH
Q 012785 279 LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMS 358 (456)
Q Consensus 279 i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~ 358 (456)
..+.||||.++ .|+|+||++++ +++++.+.......+++.++++|.++.++|+.+.+ ++++++.++..+
T Consensus 287 pdi~t~sK~~~-~G~~~G~~~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---------~~~~~~~~~~~~ 355 (453)
T 4ffc_A 287 PDIVTMAKGIA-GGMPLSAVTGR-AELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRE---------LDLPARARAIEA 355 (453)
T ss_dssp CSEEEECGGGG-TTSSCEEEEEE-HHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHH---------TTHHHHHHHHHH
T ss_pred cchHhhhhhhc-CCcCeEEEEEC-HHHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhh---------hhHHHHHHHHHH
Confidence 33668999999 59999999997 99998887766677899999999999999985433 234555555555
Q ss_pred HHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc---------cHHHHHHHHHhCCEEeecCCCCCCC
Q 012785 359 TRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---------EIEDCESFLKGNKILTRSGKHFGFS 429 (456)
Q Consensus 359 ~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---------~~~~~~~~l~~~gI~v~pg~~fg~~ 429 (456)
..++.+.+.++.++.+...++.| +|+|+.+.. ....+.+.+.++||.++|+..|
T Consensus 356 ~l~~~l~~~~~~~~~~~~~~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--- 418 (453)
T 4ffc_A 356 SVTSRLSALAEEVDIIGEVRGRG--------------AMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGTF--- 418 (453)
T ss_dssp HHHHHHHHHHHHCSSEEEEEEET--------------TEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECTT---
T ss_pred HHHHHHHHHHhhCCCeEEEEeec--------------eEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCCC---
Confidence 55555665555555443333333 367777621 2456778888999999997654
Q ss_pred CCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 430 PKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 430 ~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
.+++||+++ .++|++++++++|++++
T Consensus 419 ~~~iRi~~~~~~t~e~i~~~l~~l~~~l 446 (453)
T 4ffc_A 419 GNVIRLLPPLVIGDDLLDEGITALSDII 446 (453)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 468999765 48999999999999876
No 140
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.94 E-value=2.6e-26 Score=234.76 Aligned_cols=277 Identities=11% Similarity=0.021 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC--------CCCCCCcEEEEeCCCCCChhhhhhhcCC-
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS--------QDASEPISVVSAAPYYSSYPSITDCVKS- 213 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~--------~gd~~~~~Vlv~~P~y~~~~~~~~~~g~- 213 (456)
.++++++++++...- +. ..++|++|+|++++++.+++++.. +++ +|++.+|+|+++...+...+.
T Consensus 93 ~~~~~~la~~l~~~~-~~-~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~----~vi~~~~~yhg~~~~~~~~~~~ 166 (459)
T 4a6r_A 93 HPAVVELSSLLAEVT-PA-GFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKK----TLIGRWNGYHGSTIGGASLGGM 166 (459)
T ss_dssp CHHHHHHHHHHHHHS-CT-TCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCC----EEEEETTCCCCSSHHHHHHSCC
T ss_pred CHHHHHHHHHHHHhC-CC-CCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCC----EEEEECCCcCCccHHHHhhcCC
Confidence 556666666664321 11 346999999999999999999875 456 999999999998877666532
Q ss_pred --------------eEeeecc--------C--------cccccc-------CCCeEEEEcCCCCCCcccc-h--------
Q 012785 214 --------------RLYKWAG--------D--------AKRFNK-------DGPYIELVTSPNNPDGSVR-Q-------- 247 (456)
Q Consensus 214 --------------~~~~~~~--------d--------~~~l~~-------~~~~~i~v~~P~NPtG~~~-~-------- 247 (456)
..+.++. | .+.++. .++++++++.++|++|.+. +
T Consensus 167 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~ 246 (459)
T 4a6r_A 167 KYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIE 246 (459)
T ss_dssp TTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHH
T ss_pred hhhccccCCCCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHH
Confidence 2222221 2 233322 2345555544455556644 2
Q ss_pred HHhhhcCcEEEeeecCCCCCCCCCC---CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHH---HHHhhccCcCC
Q 012785 248 SVVNRSGGILVHDLAYYWPQYTSIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMT---KYIELNTIGVS 321 (456)
Q Consensus 248 ~l~~~~~~~iI~De~y~~~~~~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~---~~~~~~~~~~s 321 (456)
++|+++|+++|+||+|.+..+.+-. ...+...-+.+|||.++..|+|+||++++ +++++.+. ......+++.+
T Consensus 247 ~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~-~~i~~~~~~~~~~~~~~t~~~~ 325 (459)
T 4a6r_A 247 RICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVG-KRVAEGLIAGGDFNHGFTYSGH 325 (459)
T ss_dssp HHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEEC-HHHHHHHHHHCTTHHHHHHCSC
T ss_pred HHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeehhhhhcCCCCCccceeeC-HHHHHHhhcCCCcccCCCCCCC
Confidence 3899999999999999975444311 11111112447899998444999999996 99999987 33455688999
Q ss_pred hHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHH-HHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEe
Q 012785 322 KDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTN-HQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWL 400 (456)
Q Consensus 322 ~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~ 400 (456)
+++|.++.+.|+.+.+ ++++++.+ +..+..++.+.+.|++++.+...++.|. |+++
T Consensus 326 ~~~~aaa~aal~~~~~---------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~--------------~~~~ 382 (459)
T 4a6r_A 326 PVCAAVAHANVAALRD---------EGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGM--------------VQAF 382 (459)
T ss_dssp HHHHHHHHHHHHHHHH---------TCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETT--------------EEEE
T ss_pred HHHHHHHHHHHHHHhc---------chHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEE--------------EEEE
Confidence 9999999999985433 23455555 4555555555455555544444444333 5677
Q ss_pred ecCcc-------------HHHHHHHHHhCCEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 401 KCEQE-------------IEDCESFLKGNKILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 401 ~~~~~-------------~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
.+..+ ...+.+.+.++||.++|+. +++||+ +..++|++++++++|++++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g------~~iRi~~~~~~t~e~i~~~l~~l~~~l 446 (459)
T 4a6r_A 383 TLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACG------DHIVSAPPLVMTRAEVDEMLAVAERCL 446 (459)
T ss_dssp EECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEET------TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEecCccccccccchHHHHHHHHHHHHHCCeEEecCC------CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 66421 4567788889999999952 799999 4459999999999999876
No 141
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.94 E-value=7.4e-27 Score=236.96 Aligned_cols=313 Identities=12% Similarity=0.035 Sum_probs=199.0
Q ss_pred CCCCeEEecCCCC--CCC-chhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 92 GGERIINVDHGDP--TMY-EKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~p--~~~-~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
.++..+|+..+.. .+. .++.+.++.. ..+.... ...|+... ..+|++++++++. ..++|++
T Consensus 53 ~g~~ylD~~~~~~~~~lG~~~p~v~~a~~-~~~~~~~--~~~~~~~~------~~~l~~~la~~~~-------~~~~v~~ 116 (434)
T 3l44_A 53 DGNKYIDYLAAYGPIITGHAHPHITKAIT-TAAENGV--LYGTPTAL------EVKFAKMLKEAMP-------ALDKVRF 116 (434)
T ss_dssp TCCEEEECCGGGTTCSSCBTCHHHHHHHH-HHHHHCS--CCSSCCHH------HHHHHHHHHHHCT-------TCSEEEE
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHH-HHHHhCc--CCCCCCHH------HHHHHHHHHHhCC-------CCCEEEE
Confidence 4667888877652 222 2344443222 1122221 12344332 3677777777653 2479999
Q ss_pred ccCHHHHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhhcCC--------------------eEeeecc-Ccccc
Q 012785 169 GTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCVKS--------------------RLYKWAG-DAKRF 225 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~~g~--------------------~~~~~~~-d~~~l 225 (456)
|+|++++++.+++++.. +++ +|++.+|+|+++...+...+. .++.++. |.+.+
T Consensus 117 ~~sGsea~~~ai~~a~~~~~~~----~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 192 (434)
T 3l44_A 117 VNSGTEAVMTTIRVARAYTGRT----KIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETL 192 (434)
T ss_dssp ESSHHHHHHHHHHHHHHHHCCC----EEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHH
T ss_pred eCchHHHHHHHHHHHHHhhCCC----EEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHH
Confidence 99999999999998765 667 999999999997765544332 1222222 55554
Q ss_pred cc------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCCC---CCCCcEEEecCccc
Q 012785 226 NK------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSITY---PADHDLMLFTVSKS 287 (456)
Q Consensus 226 ~~------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~~---~~~~~i~i~S~SK~ 287 (456)
+. .++++++++.+||++|.+.+ ++|+++|+++|+||+|.+. ..+... ..+...-+.||||.
T Consensus 193 e~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~ 271 (434)
T 3l44_A 193 KEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDLLGVTPDLTALGKV 271 (434)
T ss_dssp HHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTCCCSEEEEEGG
T ss_pred HHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccccHHHHHcCCCCCeeehhhh
Confidence 32 23455555444556666553 3899999999999999865 332111 11111225689999
Q ss_pred cCCCCceEEEEEEeCHHHHHHHHHH---HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 012785 288 TGHAGTRIGWALVKDMEVAKKMTKY---IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQL 364 (456)
Q Consensus 288 ~g~~G~RiG~l~~~~~~~~~~l~~~---~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 364 (456)
+| +|+|+||++++ +++++.+.+. ....+++.++++|.++.+.|+.+.+ ++++++.++..+..++.+
T Consensus 272 ~~-~G~~iG~~~~~-~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~---------~~~~~~~~~~~~~l~~~L 340 (434)
T 3l44_A 272 IG-GGLPIGAYGGK-KEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ---------EGLYEKLDELGATLEKGI 340 (434)
T ss_dssp GG-TTSSCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS---------TTHHHHHHHHHHHHHHHH
T ss_pred hc-CCcCeeeEEEc-HHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHHHHH
Confidence 99 89999999986 9998887652 2345789999999999999985433 234444444444444444
Q ss_pred HHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc---------------cHHHHHHHHHhCCEEeecCCCCCCC
Q 012785 365 RMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---------------EIEDCESFLKGNKILTRSGKHFGFS 429 (456)
Q Consensus 365 ~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---------------~~~~~~~~l~~~gI~v~pg~~fg~~ 429 (456)
.+.+...+.....++.| +|+++.+.. ....+.+.|.++||.++|+.
T Consensus 341 ~~~~~~~~~~~~~~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----- 401 (434)
T 3l44_A 341 LEQAAKHNIDITLNRLK--------------GALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSK----- 401 (434)
T ss_dssp HHHHHHTTCCEEEEEET--------------TEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSST-----
T ss_pred HHHHHhCCCCEEEEeec--------------cEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecC-----
Confidence 44444344322222223 366666521 12557778889999999964
Q ss_pred CCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 430 PKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 430 ~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
.+++|+++..++|++++++++|++++
T Consensus 402 ~~~~rl~~~~t~e~i~~~l~~l~~~l 427 (434)
T 3l44_A 402 YEAWFLTTEHTKEDIEYTIEAVGRAF 427 (434)
T ss_dssp TCCEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CCcEEEecccCHHHHHHHHHHHHHHH
Confidence 45789988779999999999999876
No 142
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.94 E-value=5.1e-26 Score=232.02 Aligned_cols=321 Identities=12% Similarity=0.030 Sum_probs=206.3
Q ss_pred CCCCeEEecCCC--CCC-CchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 92 GGERIINVDHGD--PTM-YEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~--p~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
.++..+|+..+. ..+ ..++.+.++.. ..+.. ...|....+ ..+++.++++++...... ...++|++
T Consensus 59 ~g~~ylD~~~~~~~~~lGh~~p~v~~A~~-~~~~~----~~~~~~~~~-----~~~~~~~la~~l~~~~~~-~~~~~v~~ 127 (451)
T 3oks_A 59 DGNRLIDLGSGIAVTTVGNSAPKVVEAVR-SQVGD----FTHTCFMVT-----PYEGYVAVCEQLNRLTPV-RGDKRSAL 127 (451)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHH-HHHTT----CSCCTTTTS-----CCHHHHHHHHHHHHHSSC-CSSEEEEE
T ss_pred CCCEEEEcCCCccccccCCCCHHHHHHHH-HHHHh----cccccCCcc-----CCHHHHHHHHHHHHhCCc-CCCCEEEE
Confidence 456778887663 222 22333443222 11221 123443334 356677777776432211 12468999
Q ss_pred ccCHHHHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhhcCC----------------eEeeec---------cC
Q 012785 169 GTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCVKS----------------RLYKWA---------GD 221 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~~g~----------------~~~~~~---------~d 221 (456)
|+|++++++.+++.+.. .++ +|++.+|+|+++...+...+. ..++++ .|
T Consensus 128 ~~sGseA~~~Alk~a~~~~g~~----~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 203 (451)
T 3oks_A 128 FNSGSEAVENAVKIARSHTHKP----AVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKE 203 (451)
T ss_dssp ESSHHHHHHHHHHHHHHHHCCC----EEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTT
T ss_pred eCcHHHHHHHHHHHHHHhcCCC----eEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccc
Confidence 99999999999988764 345 899999999988876655432 222332 11
Q ss_pred --------cc----cccc---CCCeEEEEcCCCCCCcccc-h---------HHhhhcCcEEEeeecCCCCCCCCCC---C
Q 012785 222 --------AK----RFNK---DGPYIELVTSPNNPDGSVR-Q---------SVVNRSGGILVHDLAYYWPQYTSIT---Y 273 (456)
Q Consensus 222 --------~~----~l~~---~~~~~i~v~~P~NPtG~~~-~---------~l~~~~~~~iI~De~y~~~~~~~~~---~ 273 (456)
.+ .++. .+..++++++|.|++|.+. + ++|+++|+++|+||+|.+..+.+.. .
T Consensus 204 ~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~ 283 (451)
T 3oks_A 204 LATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACE 283 (451)
T ss_dssp TTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGG
T ss_pred cchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhh
Confidence 11 1111 1234555667777665432 2 3799999999999999865443211 1
Q ss_pred CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHH
Q 012785 274 PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFT 353 (456)
Q Consensus 274 ~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~ 353 (456)
..+...-+.||||.++ +|+|+||++++ +++++.+.......+++.++++|.++.++|+.+.+ ++++++.
T Consensus 284 ~~~~~pdi~t~sK~l~-~G~~iG~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---------~~~~~~~ 352 (451)
T 3oks_A 284 HEGIDPDLIVTAKGIA-GGLPLSAVTGR-AEIMDSPHVSGLGGTYGGNPIACAAALATIETIES---------EGLVARA 352 (451)
T ss_dssp GGTCCCSEEEECGGGG-TTSSCEEEEEE-HHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHH---------TTHHHHH
T ss_pred hcCCCCCeeeehhhhh-CCcceEEEEEC-HHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhh---------hhHHHHH
Confidence 1122222448999999 69999999997 99998887766677899999999999999985433 2344555
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecC-------c--cHHHHHHHHHhCCEEeecCC
Q 012785 354 NHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE-------Q--EIEDCESFLKGNKILTRSGK 424 (456)
Q Consensus 354 ~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~-------~--~~~~~~~~l~~~gI~v~pg~ 424 (456)
++..+..++.+.+.++.++.+...++.|. |+|+.+. . ....+.+.+.++||.++|+.
T Consensus 353 ~~~~~~l~~~L~~~~~~~~~~~~~~~~G~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~ 418 (451)
T 3oks_A 353 QQIEKIMKDRLGRLQAEDDRIGDVRGRGA--------------MIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCG 418 (451)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEEETT--------------EEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEEC
T ss_pred HHHHHHHHHHHHHHHhhCCCeEEEEEeeE--------------EEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCC
Confidence 55555555555555555554433333333 6777762 1 24567788889999999976
Q ss_pred CCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 425 HFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 425 ~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
.| .+++||+++ .+++++++++++|++++
T Consensus 419 ~~---~~~iRi~~~~~~t~e~i~~~l~~l~~~l 448 (451)
T 3oks_A 419 TY---GNVVRFLPPLSIGDDLLNEGLDVLEEVL 448 (451)
T ss_dssp TT---SCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CC---CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 55 468999754 48999999999999876
No 143
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.94 E-value=1.3e-25 Score=226.23 Aligned_cols=282 Identities=14% Similarity=0.119 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhh----cCCeEeee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDC----VKSRLYKW 218 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~----~g~~~~~~ 218 (456)
.+|++.++++.+ .+++++++|+++++.+++.+++++|| +|++++|+|+.+...++. .|.+++.+
T Consensus 84 ~~l~~~la~~~g--------~~~~~~~~sG~~Ai~~al~~l~~~Gd----~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v 151 (414)
T 3ndn_A 84 SVFEERLRLIEG--------APAAFATASGMAAVFTSLGALLGAGD----RLVAARSLFGSCFVVCSEILPRWGVQTVFV 151 (414)
T ss_dssp HHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHTTCCTTC----EEEEESCCCHHHHHHHHTHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHC--------CCcEEEECCHHHHHHHHHHHHhCCCC----EEEEcCCccchHHHHHHHHHHHcCcEEEEe
Confidence 566666776664 24788888889999999999999999 999999999998777654 89999888
Q ss_pred cc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC-CCCCCCCCCCcEEEecCcccc
Q 012785 219 AG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-YTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 219 ~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~~~~~~~~~~~i~i~S~SK~~ 288 (456)
+. |.+.++. .++++|++++|+||||.+.+ ++|+++|+++|+||+|..+. ..++ ..+.++++.|+||.+
T Consensus 152 ~~~d~~~l~~ai~~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~--~~g~div~~S~sK~l 229 (414)
T 3ndn_A 152 DGDDLSQWERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGF--PLGVDVVVYSGTKHI 229 (414)
T ss_dssp CTTCHHHHHHHTSSCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCCG--GGTCSEEEEETTTTT
T ss_pred CCCCHHHHHHhcCCCCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCCch--hcCCCeEeccCCccc
Confidence 76 5555543 36799999999999999976 48999999999999998321 1222 234579999999999
Q ss_pred CCCC-ceEEEEEEeCHHHHH-HHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 012785 289 GHAG-TRIGWALVKDMEVAK-KMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRM 366 (456)
Q Consensus 289 g~~G-~RiG~l~~~~~~~~~-~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 366 (456)
|.+| +|+||++++ ++.+. .++..........++....++...++ .+....++..++++.+.+
T Consensus 230 ~~~G~~~~G~vv~~-~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~---------------~l~~r~~~~~~~a~~l~~ 293 (414)
T 3ndn_A 230 DGQGRVLGGAILGD-REYIDGPVQKLMRHTGPAMSAFNAWVLLKGLE---------------TLAIRVQHSNASAQRIAE 293 (414)
T ss_dssp TCSSCCCCEEEEEC-HHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGG---------------GHHHHHHHHHHHHHHHHH
T ss_pred cCCCCceEEEEEEC-HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH
Confidence 9778 899999997 66665 67655554455566666555554443 344556667788889999
Q ss_pred HHHhcCCccccCCCCcc----cccccccCCCCCceEEeecCcc-------HHHHHHHHHhCCEEeecCCCC---------
Q 012785 367 AVQKSGLFSVPELPSQF----CTFLGRAFEPQPAFAWLKCEQE-------IEDCESFLKGNKILTRSGKHF--------- 426 (456)
Q Consensus 367 ~L~~~~~~~~~~~~g~~----~~~~~~~~~~~~~f~~~~~~~~-------~~~~~~~l~~~gI~v~pg~~f--------- 426 (456)
.|++++.+.....++.- .....+.....+.++|+.+++. .+.+.+.++..++.+..|..+
T Consensus 294 ~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~ 373 (414)
T 3ndn_A 294 FLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNNLGDAKSLVTHPATT 373 (414)
T ss_dssp HHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGT
T ss_pred HHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccceEcCCCCCCCceeeCcccc
Confidence 99887654322111100 0000011122355799998653 344566667778888888754
Q ss_pred -------------CCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 427 -------------GFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 427 -------------g~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|..++.||||++ .|+.+++++.|++.|+
T Consensus 374 ~~~~~~~~~~~~~g~~~~~iRlsvG--~e~~~dli~dl~~al~ 414 (414)
T 3ndn_A 374 THRAMGPEGRAAIGLGDGVVRISVG--LEDTDDLIADIDRALS 414 (414)
T ss_dssp TTCTTHHHHHHHTTCCTTEEEEECC--SSCHHHHHHHHHHHHC
T ss_pred ccccCCHHHHHhcCCCCCeEEEEeC--cCCHHHHHHHHHHhhC
Confidence 234689999985 4566777788877663
No 144
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.94 E-value=4.6e-25 Score=220.89 Aligned_cols=285 Identities=13% Similarity=0.049 Sum_probs=206.7
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh----hhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT----DCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~----~~~g~~~~~ 217 (456)
..+|++.++++++. +++++++|++++++.++.+++++|| +|+++.|+|+.+...+ +..|.++..
T Consensus 68 ~~~l~~~la~~~g~--------~~~~~~~sGt~A~~~al~~~~~~gd----~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~ 135 (392)
T 3qhx_A 68 RTALEAALAAVEDA--------AFGRAFSSGMAAADCALRAMLRPGD----HVVIPDDAYGGTFRLIDKVFTGWNVEYTP 135 (392)
T ss_dssp HHHHHHHHHHHTTC--------SEEEEESSHHHHHHHHHHHHCCTTC----EEEEETTCCHHHHHHHHHTGGGGTCEEEE
T ss_pred HHHHHHHHHHHhCC--------CcEEEECCHHHHHHHHHHHHhCCCC----EEEEeCCCcchHHHHHHHHHHhcCcEEEE
Confidence 36888888888753 3788888889999999999999999 9999999999876665 667998888
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCcccc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~ 288 (456)
++. |.+.++. .++++|++++|+||||.+.+ ++|+++|+++|+|++|..+ +...+...+.+++++|+||.+
T Consensus 136 v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~-~~~~~~~~~~di~~~S~sK~l 214 (392)
T 3qhx_A 136 VALADLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASP-ALQQPLSLGADVVLHSTTKYI 214 (392)
T ss_dssp ECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCT-TTCCGGGGTCSEEEEETTTTT
T ss_pred eCCCCHHHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCccc-ccCChHHhCCcEEEEcCcccc
Confidence 776 4555543 46799999999999999976 4899999999999999853 211122345689999999999
Q ss_pred CCCC-ceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 012785 289 GHAG-TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMA 367 (456)
Q Consensus 289 g~~G-~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 367 (456)
|.+| +|+||++++++++.+.+.........+.+++.+.++...++. +....++..++.+.+.+.
T Consensus 215 g~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~---------------l~~~~~~~~~~~~~l~~~ 279 (392)
T 3qhx_A 215 GGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKT---------------LVLRMQRHSENAAAVAEF 279 (392)
T ss_dssp TCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhH---------------HHHHHHHHHHHHHHHHHH
Confidence 9777 899999997678999998887777888899988888877762 333455667777888888
Q ss_pred HHhcCCccccCCCCcc----cccccccCCCCCceEEeecCcc---HHHHHHHHHhCCEEeecCCCCC-------------
Q 012785 368 VQKSGLFSVPELPSQF----CTFLGRAFEPQPAFAWLKCEQE---IEDCESFLKGNKILTRSGKHFG------------- 427 (456)
Q Consensus 368 L~~~~~~~~~~~~g~~----~~~~~~~~~~~~~f~~~~~~~~---~~~~~~~l~~~gI~v~pg~~fg------------- 427 (456)
|++++.+.....++.- .....+.....+..+++.++++ .+.+...++..|+.+..|+.+.
T Consensus 280 L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~ 359 (392)
T 3qhx_A 280 LAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHAST 359 (392)
T ss_dssp HHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSCCCCSSCEEECGGGTSCGGG
T ss_pred HhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCCCCCCCceeeCccccccccc
Confidence 9887644322111100 0000000112244688888652 4456666777788888777542
Q ss_pred ------CCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 428 ------FSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 428 ------~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
..++.||||++. |+.+++++.|.+.|+
T Consensus 360 ~~~~~g~~~~~iRlSvg~--e~~~~~i~~l~~al~ 392 (392)
T 3qhx_A 360 AGSQLEVPDDLVRLSVGI--EDVADLLDDLKQALG 392 (392)
T ss_dssp BTTBCCCCTTEEEEECCS--SCHHHHHHHHHHHHC
T ss_pred CHHHcCCCCCeEEEEecc--CCHHHHHHHHHHHhC
Confidence 236789999853 466667777776653
No 145
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.94 E-value=4.8e-25 Score=222.94 Aligned_cols=306 Identities=14% Similarity=0.052 Sum_probs=210.5
Q ss_pred EecCCCCCCCchhHhhhcccccccccCccccccccC-CCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHH
Q 012785 98 NVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSD-VRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLF 176 (456)
Q Consensus 98 ~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al 176 (456)
+|+.|+|+++.|+.+.+... ..+..+ .|++ ..+ ..+|+++++++++. ++|++|+|+++++
T Consensus 20 ~l~~~~p~~~~p~~~~~a~~-~~~~~~-----~y~~~~~~-----~~~l~~~la~~~~~--------~~v~~~~ggt~al 80 (424)
T 2po3_A 20 PLLVGRPNRIDRARLYERLD-RALDSQ-----WLSNGGPL-----VREFEERVAGLAGV--------RHAVATCNATAGL 80 (424)
T ss_dssp CEETTCCCCCCHHHHHHHHH-HHHHHT-----CCSSSCHH-----HHHHHHHHHHHHTS--------SEEEEESCHHHHH
T ss_pred cccccCCCCCChHHHHHHHH-HHHhcC-----CcccCCHH-----HHHHHHHHHHHhCC--------CeEEEeCCHHHHH
Confidence 68999999988765554321 222222 3666 555 48999999999963 4899999999999
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-------ccccc---CCCeEEEEcCCCCCCcccc
Q 012785 177 QAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-------KRFNK---DGPYIELVTSPNNPDGSVR 246 (456)
Q Consensus 177 ~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-------~~l~~---~~~~~i~v~~P~NPtG~~~ 246 (456)
++++.++. +|| +|++++|+|+.+...++..|++++.++.|. +.++. .++++|+++ ||||...
T Consensus 81 ~~~l~~l~-~gd----~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~---~~tG~~~ 152 (424)
T 2po3_A 81 QLLAHAAG-LTG----EVIMPSMTFAATPHALRWIGLTPVFADIDPDTGNLDPDQVAAAVTPRTSAVVGV---HLWGRPC 152 (424)
T ss_dssp HHHHHHHT-CCS----EEEEESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHHHHGGGCCTTEEEEEEE---CGGGCCC
T ss_pred HHHHHHcC-CCC----EEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhhCcCCcEEEEE---CCCCCcC
Confidence 99999985 678 999999999999999999999998776643 33432 256888774 4899875
Q ss_pred h-----HHhhhcCcEEEeeecCCC-CCCC--CCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccC
Q 012785 247 Q-----SVVNRSGGILVHDLAYYW-PQYT--SITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTI 318 (456)
Q Consensus 247 ~-----~l~~~~~~~iI~De~y~~-~~~~--~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~ 318 (456)
+ ++|+++|+++|+||+|.. ..+. ++.... +++++||||..+++|.|+||++++++++++++.........
T Consensus 153 ~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~~~--di~~~S~sk~K~l~~~~~G~~v~~~~~l~~~l~~~~~~~~~ 230 (424)
T 2po3_A 153 AADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSLG--DAEVFSFHATKAVNAFEGGAVVTDDADLAARIRALHNFGFD 230 (424)
T ss_dssp CHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSS--SEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTTT
T ss_pred CHHHHHHHHHHcCCEEEEECccccCCeECCeeccccc--CEEEEeCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhcCcc
Confidence 5 389999999999999983 3222 221112 39999999766777799999999768899888876542111
Q ss_pred c--------C-ChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccC-CCCccccccc
Q 012785 319 G--------V-SKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPE-LPSQFCTFLG 388 (456)
Q Consensus 319 ~--------~-s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~g~~~~~~~ 388 (456)
. . ..+.+.++...+.. .+.++...++.++.++.+.+.|++++++.+.. +.|+..+|+
T Consensus 231 ~~~~~~~~g~~~~~~~~~aa~~l~~------------~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~- 297 (424)
T 2po3_A 231 LPGGSPAGGTNAKMSEAAAAMGLTS------------LDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQ- 297 (424)
T ss_dssp CTTCCTTCCCBCCCCHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCC-
T ss_pred ccccccccCcCCCcCHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccE-
Confidence 0 1 01223333333331 23455666677777778888887765565544 334321110
Q ss_pred ccCCCCCceEEeecCc-----cHHHHHHHHHhCCEEeecCCCCCC---------------CCC-------eEEEEec--C
Q 012785 389 RAFEPQPAFAWLKCEQ-----EIEDCESFLKGNKILTRSGKHFGF---------------SPK-------YVRISML--D 439 (456)
Q Consensus 389 ~~~~~~~~f~~~~~~~-----~~~~~~~~l~~~gI~v~pg~~fg~---------------~~~-------~iRis~~--~ 439 (456)
++++.+++ +.+.+.+.|.++||.+++. |+. .++ .||+++. .
T Consensus 298 --------~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~--~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~ 367 (424)
T 2po3_A 298 --------YVIVEIDEATTGIHRDLVMEVLKAEGVHTRAY--FSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAI 367 (424)
T ss_dssp --------CEEEEECHHHHSSCHHHHHHHHHHTTEECBCT--TCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTC
T ss_pred --------EEEEEECCccchhhHHHHHHHHHHCCCceecc--cCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCC
Confidence 34466652 5677888899999999872 220 011 2777632 3
Q ss_pred ChhHHHHHHHHHHhhh
Q 012785 440 RDENYNLFVQRLSKIL 455 (456)
Q Consensus 440 ~~e~i~~~l~~L~~~l 455 (456)
+++++++++++|++++
T Consensus 368 t~e~i~~~~~~L~~~~ 383 (424)
T 2po3_A 368 GDDDIRRVADLLRLCA 383 (424)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8999999999998875
No 146
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.94 E-value=8.5e-26 Score=225.53 Aligned_cols=280 Identities=12% Similarity=0.069 Sum_probs=194.9
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 220 (456)
..+|+++++++++. ++.|++|+| ++++++++.++ .++|| +|+++.|+|+.+...++..|++++.++.
T Consensus 40 ~~~l~~~la~~~~~-------~~~i~~~sG-t~al~~~l~~l~~~~gd----~Vi~~~~~~~~~~~~~~~~g~~~~~v~~ 107 (388)
T 1b9h_A 40 VNSFEREFAAHHGA-------AHALAVTNG-THALELALQVMGVGPGT----EVIVPAFTFISSSQAAQRLGAVTVPVDV 107 (388)
T ss_dssp HHHHHHHHHHHTTC-------SEEEEESCH-HHHHHHHHHHTTCCTTC----EEEEESSSCTHHHHHHHHTTCEEEEECB
T ss_pred HHHHHHHHHHHhCC-------CeEEEeCCH-HHHHHHHHHHcCCCCcC----EEEECCCccHHHHHHHHHcCCEEEEEec
Confidence 48999999999964 357888887 89999999999 88999 9999999999999999999999987776
Q ss_pred Cc-------ccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC-CCCCCCCCCCCcEEEecC
Q 012785 221 DA-------KRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP-QYTSITYPADHDLMLFTV 284 (456)
Q Consensus 221 d~-------~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~-~~~~~~~~~~~~i~i~S~ 284 (456)
|. +.++. .++++|+ |+||||.+.+ ++|+++|+++|+|++|... .+.+.....-.++.+.||
T Consensus 108 ~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~~i~~~S~ 184 (388)
T 1b9h_A 108 DAATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSF 184 (388)
T ss_dssp CTTTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEEC
T ss_pred CCCcCCCCHHHHHHhcCcCceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCccCCeecccccceEEEEc
Confidence 53 33322 2456654 9999999876 4899999999999999852 221111011127999999
Q ss_pred ccccCCCCceEEEEEEeCHHH--HHHHHHHHhhc-----------cCcCC-hHHHHHHHHHHHhhhCCCCCCCCcchhHH
Q 012785 285 SKSTGHAGTRIGWALVKDMEV--AKKMTKYIELN-----------TIGVS-KDSQLRAAKVLKVVSDSCKPSGSEDECFF 350 (456)
Q Consensus 285 SK~~g~~G~RiG~l~~~~~~~--~~~l~~~~~~~-----------~~~~s-~~~q~~a~~~L~~~~~~~~~~~~~~~~~l 350 (456)
||..+++|.|+||++++++.+ ++.+....... ..+.+ .+.+..+..++.. .+++
T Consensus 185 s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~------------~~~l 252 (388)
T 1b9h_A 185 QNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQ------------LARL 252 (388)
T ss_dssp CTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHH------------HTTH
T ss_pred cCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHH------------HHHH
Confidence 987777788999999974446 56665443210 01111 1122222222221 2356
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc----cHHHHHHHHHhCCEEeecCCCC
Q 012785 351 EFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----EIEDCESFLKGNKILTRSGKHF 426 (456)
Q Consensus 351 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~~~gI~v~pg~~f 426 (456)
++.+++++++++.+.+.|++++++.+..+.... .+..++|+|+.++. +.+.+.+.|.++||.++++..-
T Consensus 253 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~ 325 (388)
T 1b9h_A 253 DEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRA-------DRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAFRA 325 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTC-------CBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECCCC
T ss_pred HHHHHHHHHHHHHHHHHhccCCCccccCCCcCC-------CccceEEEEEEeCCcCcccHHHHHHHHHHCCCCcccccCc
Confidence 677888889999999999987555544321000 01123489999874 4566888888999999986421
Q ss_pred ----------CC------------------CCCeEEEEecC---ChhHHHHHHHHHHhhh
Q 012785 427 ----------GF------------------SPKYVRISMLD---RDENYNLFVQRLSKIL 455 (456)
Q Consensus 427 ----------g~------------------~~~~iRis~~~---~~e~i~~~l~~L~~~l 455 (456)
+. ..+.|||++.. ++++++.+++.|++++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~ 385 (388)
T 1b9h_A 326 IYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAV 385 (388)
T ss_dssp GGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHH
T ss_pred cccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 00 01369999863 7899999999999875
No 147
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.94 E-value=1.1e-24 Score=220.81 Aligned_cols=282 Identities=12% Similarity=0.111 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh----hhhhcCCeEeee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS----ITDCVKSRLYKW 218 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~----~~~~~g~~~~~~ 218 (456)
.+|+++++++++. ++.|++++|+ +++++++.+++++|| +|++++|.|+.+.. .++..|+++..+
T Consensus 117 ~~l~~~lA~l~g~-------~~~v~~~sG~-~Ai~~al~~l~~~Gd----~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v 184 (445)
T 1qgn_A 117 VVLEEKISALEGA-------ESTLLMASGM-CASTVMLLALVPAGG----HIVTTTDCYRKTRIFIETILPKMGITATVI 184 (445)
T ss_dssp HHHHHHHHHHHTC-------SEEEEESCHH-HHHHHHHHHHSCSSC----EEEEETTSCHHHHHHHHHTGGGGTCEEEEE
T ss_pred HHHHHHHHHHhCC-------CcEEEeCCHH-HHHHHHHHHHhCCCC----EEEEcCCCchhHHHHHHHHHHHcCCEEEEe
Confidence 5899999998863 3567777776 999999999999999 99999999998766 356679998887
Q ss_pred cc-Ccccccc---CCC-eEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCcccc
Q 012785 219 AG-DAKRFNK---DGP-YIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 219 ~~-d~~~l~~---~~~-~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~ 288 (456)
+. |.+.++. .++ ++|++++|+||||.+.+ ++|+++|+++|+|++|..+... .+...+.+++++|+||.+
T Consensus 185 ~~~d~~~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~-~~~~~g~Div~~S~sK~~ 263 (445)
T 1qgn_A 185 DPADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQ-KALALGADLVLHSATKFL 263 (445)
T ss_dssp CSSCHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-CTTTTTCSEEEECTTTTT
T ss_pred CCCCHHHHHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC-CccccCCEEEEECCcccc
Confidence 76 4555543 367 99999999999999987 4899999999999999854221 122345689999999999
Q ss_pred CCCC-ceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 012785 289 GHAG-TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMA 367 (456)
Q Consensus 289 g~~G-~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 367 (456)
|.+| +|+||++++ +++++++...........+++...++...++ .+....+...++++.+.+.
T Consensus 264 gg~gd~~~G~l~~~-~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~---------------~l~~r~~~~~~~a~~l~~~ 327 (445)
T 1qgn_A 264 GGHNDVLAGCISGP-LKLVSEIRNLHHILGGALNPNAAYLIIRGMK---------------TLHLRVQQQNSTALRMAEI 327 (445)
T ss_dssp TCSSSCCCEEEEEC-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHGG---------------GHHHHHHHHHHHHHHHHHH
T ss_pred cccccceEEEEEEC-HHHHHHHHHHHHHhCCCCCHHHHHHHHHhHH---------------HHHHHHHHHHHHHHHHHHH
Confidence 8555 589999996 8899888776654444456666555555444 2334445566778889999
Q ss_pred HHhcCCc-cccCCCC-cc--cccccccCCCCCceEEeecCccH---HHHHHHHHhCCEEeecCCCC--------------
Q 012785 368 VQKSGLF-SVPELPS-QF--CTFLGRAFEPQPAFAWLKCEQEI---EDCESFLKGNKILTRSGKHF-------------- 426 (456)
Q Consensus 368 L~~~~~~-~~~~~~g-~~--~~~~~~~~~~~~~f~~~~~~~~~---~~~~~~l~~~gI~v~pg~~f-------------- 426 (456)
|++++.+ .+..|.- .. .....+.....++++++.+++.. ..+...++..++.+..|+.+
T Consensus 328 L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~ 407 (445)
T 1qgn_A 328 LEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDL 407 (445)
T ss_dssp HHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTS
T ss_pred HhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCCCceEeccCCCCceeeecccccccccC
Confidence 9987654 2222210 00 00000001124557888886532 33444444457888887654
Q ss_pred --------CCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 427 --------GFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 427 --------g~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|..++.||||++ .|+++.+++.|++++
T Consensus 408 ~~~~~~~~g~~~~~iRlSvG--~Edid~li~~L~~al 442 (445)
T 1qgn_A 408 SQSDRAKYGIMDNLVRFSFG--VEDFDDLKADILQAL 442 (445)
T ss_dssp CHHHHHTTTCCSSEEEEECC--SSCHHHHHHHHHHHH
T ss_pred CHHHHHhcCCCCCeEEEEec--cCCHHHHHHHHHHHH
Confidence 223589999996 567899999998876
No 148
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.94 E-value=1.3e-26 Score=232.13 Aligned_cols=279 Identities=14% Similarity=0.099 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc----CCCCCCCcEEEEeCCCCCChhhhhhh---cCCeE
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS----SQDASEPISVVSAAPYYSSYPSITDC---VKSRL 215 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~----~~gd~~~~~Vlv~~P~y~~~~~~~~~---~g~~~ 215 (456)
.+++++++++++. ++++|++|+|+++++.++++++. ++||. +|+++.++|+.+...+.. .|+++
T Consensus 66 ~~l~~~la~~~~~------~~~~v~~~~g~t~al~~~~~~l~~~~~~~gd~---~Vl~~~~~~~~~~~~~~~~~~~g~~~ 136 (400)
T 3vax_A 66 ERAREYLASTVSA------EPDELIFTSGATESNNIALLGLAPYGERTGRR---HIITSAIEHKAVLEPLEHLAGRGFEV 136 (400)
T ss_dssp HHHHHHHHHHTTC------CGGGEEEESCHHHHHHHHHHTTHHHHHHHTCC---EEEEETTSCHHHHHHHHHHHTTTCEE
T ss_pred HHHHHHHHHHcCC------CCCcEEEeCCHHHHHHHHHHHHHHhhccCCCC---EEEECccccHhHHHHHHHHHhcCCeE
Confidence 5677777777653 35799999999999999999987 77762 699999999987666554 58888
Q ss_pred eeeccC------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEE
Q 012785 216 YKWAGD------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLML 281 (456)
Q Consensus 216 ~~~~~d------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i 281 (456)
+.++.| .+.++. .+++++++++||||||.+++ ++|+++|+++|+|++|.......-.... .++++
T Consensus 137 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~-~d~~~ 215 (400)
T 3vax_A 137 DFLTPGPSGRISVEGVMERLRPDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTTP-IDMIS 215 (400)
T ss_dssp EEECCCTTCCCCHHHHHTTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGSC-CSEEE
T ss_pred EEEccCCCCCcCHHHHHHhcCCCceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhhc-CcEEE
Confidence 877754 444443 36789999999999999987 4899999999999999853221111122 67999
Q ss_pred ecCccccCCCCceEEEEE-EeCHHHH---HHHHHHH-------hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHH
Q 012785 282 FTVSKSTGHAGTRIGWAL-VKDMEVA---KKMTKYI-------ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFF 350 (456)
Q Consensus 282 ~S~SK~~g~~G~RiG~l~-~~~~~~~---~~l~~~~-------~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l 350 (456)
+|+||.+|.+| +|+++ ++++++. ..+.... .......+...+.++.++++.+ .+.+
T Consensus 216 ~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-----------~~~~ 282 (400)
T 3vax_A 216 ISGHKIGAPKG--VGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIF-----------EAEH 282 (400)
T ss_dssp EETGGGTSCSS--CEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH-----------HHSH
T ss_pred EeHHHhCCCCc--eEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHH-----------HhhH
Confidence 99999877655 67777 7642111 1111111 1224455667777676777632 3457
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCC-
Q 012785 351 EFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGF- 428 (456)
Q Consensus 351 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~- 428 (456)
++.+++++++++.+.+.|+ .+++.+..+.+.. .++++++.++. +.+.+.+.|+ +||.+++|..|..
T Consensus 283 ~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~L~-~gi~v~~g~~~~~~ 350 (400)
T 3vax_A 283 AQWQVAAQDLRSRLLAGLA-STSFQVNGDQDHV----------VPHILNLSFEDVDAEAFLVTLK-DLVAVATGSASTSA 350 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TTTCEECSCTTSB----------CTTEEEEECTTCCHHHHHHHHH-HHHHHTTTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHhhC-CCCEEEeCCcccC----------CCCEEEEEeCCCCHHHHHHHHh-cCcEEEecccccCC
Confidence 8889999999999999998 6666665554321 12356777654 5677888888 9999999976632
Q ss_pred -------------C----CCeEEEEe-cC--ChhHHHHHHHHHHhhhC
Q 012785 429 -------------S----PKYVRISM-LD--RDENYNLFVQRLSKILS 456 (456)
Q Consensus 429 -------------~----~~~iRis~-~~--~~e~i~~~l~~L~~~l~ 456 (456)
. .+++||++ .. +++++++++++|+++++
T Consensus 351 ~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~ 398 (400)
T 3vax_A 351 SFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKP 398 (400)
T ss_dssp EECCHHHHHTTTCCHHHHTSEEEEEEEEC-------------------
T ss_pred CCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhc
Confidence 1 48999999 63 78999999999998763
No 149
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.94 E-value=9.3e-26 Score=222.67 Aligned_cols=307 Identities=11% Similarity=-0.020 Sum_probs=201.7
Q ss_pred CeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHH
Q 012785 95 RIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQ 174 (456)
Q Consensus 95 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~ 174 (456)
..+.++.++.++..++.+.++.. +.... ..|++..+ ..+|+++++++++. +..+ +++|+++
T Consensus 14 ~~~~~~~~~~~~g~~p~v~~ai~-----~~~~~-~~~~~~~~-----~~~l~~~la~~~~~-------~~~i-~~~~g~~ 74 (359)
T 3pj0_A 14 PYKLGGNGPRNVGVLTEALQNID-----DNLES-DIYGNGAV-----IEDFETKIAKILGK-------QSAV-FFPSGTM 74 (359)
T ss_dssp SEESSSSSCCBHHHHHHHTTTSC-----TTCBC-CBTTBSHH-----HHHHHHHHHHHHTC-------SEEE-EESCHHH
T ss_pred chhhcCCCccccCCCHHHHHHHH-----hhccc-CcccCCHH-----HHHHHHHHHHHhCC-------CcEE-EeCCHHH
Confidence 44667777766655554443322 11111 23444444 48999999999863 2344 4577789
Q ss_pred HHHHHHHHhcCCCCCCCcE-EE-EeCCCCCChhh---hhhhcCCeEeeecc-----Ccccccc--CCCeEEEEcCCCCCC
Q 012785 175 LFQAALYALSSQDASEPIS-VV-SAAPYYSSYPS---ITDCVKSRLYKWAG-----DAKRFNK--DGPYIELVTSPNNPD 242 (456)
Q Consensus 175 al~~~~~~l~~~gd~~~~~-Vl-v~~P~y~~~~~---~~~~~g~~~~~~~~-----d~~~l~~--~~~~~i~v~~P~NPt 242 (456)
++.++++++..+|| + |+ ++.++|..... .....|.+++.++. |.+.++. .++++|++++||||+
T Consensus 75 a~~~a~~~~~~~g~----~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~~~~~~~v~~~~p~n~~ 150 (359)
T 3pj0_A 75 AQQIALRIWADRKE----NRRVAYHPLSHLEIHEQDGLKELQQITPLLLGTANQLLTIDDIKSLREPVSSVLIELPQREI 150 (359)
T ss_dssp HHHHHHHHHHHHHT----CCEEEECTTCHHHHSSTTHHHHHHCCEEEECSCTTSCCCHHHHHTCSSCCSEEEEESSBGGG
T ss_pred HHHHHHHHHHhcCC----CcEEEEeccceeeehhcchHHHhcCceEEecCCcCCCcCHHHHHhccCCceEEEEEecccCC
Confidence 99999999988887 5 44 44454332221 22456888887654 4555543 467899999999998
Q ss_pred -cccch--------HHhhhcCcEEEeeecCCCCC-----CCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHH
Q 012785 243 -GSVRQ--------SVVNRSGGILVHDLAYYWPQ-----YTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKK 308 (456)
Q Consensus 243 -G~~~~--------~l~~~~~~~iI~De~y~~~~-----~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~ 308 (456)
|.+++ ++|+++|+++|+|++|.+.. ..........++++.||||.++.++ . ||++.+ ++++++
T Consensus 151 ~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~-g-g~~~~~-~~l~~~ 227 (359)
T 3pj0_A 151 GGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIA-G-AILAGN-DDFVQE 227 (359)
T ss_dssp TSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCSS-C-EEEEEC-HHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEeccccCCCcc-e-EEEECC-HHHHHH
Confidence 68876 27889999999999986421 1111001233567789999987553 2 777775 999999
Q ss_pred HHHHHhhccCcC--ChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcccc-CCCCcccc
Q 012785 309 MTKYIELNTIGV--SKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVP-ELPSQFCT 385 (456)
Q Consensus 309 l~~~~~~~~~~~--s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~g~~~~ 385 (456)
++..+.....+. ....+.++...++ ++.+ ..+.++++++.+.+.|++++++.+. .+.++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~a~~~~l~--------------~~~~-~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~--- 289 (359)
T 3pj0_A 228 AKIWKRRYGGDLISLYPYILSADYYFE--------------KRIG-KMAEYFEAAKGLAERFNSCSGVKTVPEVPVS--- 289 (359)
T ss_dssp HHHHHHHTTCCCSCCHHHHHHHHHHHH--------------HHGG-GHHHHHHHHHHHHHHHHTSTTEEEESSSCSS---
T ss_pred HHHHHHHhCCCcchhHHHHHHHHHHHH--------------HHHH-HhHHHHHHHHHHHHHHhhCCCceeeccCCcc---
Confidence 987654333222 2333333334443 1222 2334678888999999988656553 33333
Q ss_pred cccccCCCCCceEEeecCc----cHHHHHHHHHhCCEEeecCCCCCC-CCCeEEEEec-----CChhHHHHHHHHHHhhh
Q 012785 386 FLGRAFEPQPAFAWLKCEQ----EIEDCESFLKGNKILTRSGKHFGF-SPKYVRISML-----DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 386 ~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~-----~~~e~i~~~l~~L~~~l 455 (456)
+|+|+.++. +.+.+.+.|.++||.++||..|+. +.+++|+++. .+.+++++++++|++.+
T Consensus 290 ----------~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~l 359 (359)
T 3pj0_A 290 ----------NMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKEL 359 (359)
T ss_dssp ----------SEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred ----------eEEEEEecCccchhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhcC
Confidence 378887753 356788889999999999988863 4678999875 37899999999998864
No 150
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.94 E-value=6.3e-26 Score=223.82 Aligned_cols=280 Identities=12% Similarity=-0.007 Sum_probs=190.2
Q ss_pred ccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh--
Q 012785 129 SYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS-- 206 (456)
Q Consensus 129 ~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~-- 206 (456)
..|++..+ ..+|+++++++++. +..+++ +|+++++.++++++..+||.. .|+++.++|.....
T Consensus 41 ~~y~~~~~-----~~~l~~~la~~~~~-------~~~i~~-~~G~~a~~~al~~~~~~gd~~--~vi~~~~~~~~~~~~~ 105 (357)
T 3lws_A 41 DQYGTGAI-----IEPFEQKFADVLGM-------DDAVFF-PSGTMAQQVALRIWSDETDNR--TVAYHPLCHLEIHEQD 105 (357)
T ss_dssp EETTEETT-----HHHHHHHHHHHHTC-------SEEEEE-SCHHHHHHHHHHHHHHHHTCC--EEEECTTCHHHHSSTT
T ss_pred ccccCChH-----HHHHHHHHHHHhCC-------CcEEEe-cCcHHHHHHHHHHHhhcCCCc--EEEecccceeeeeccc
Confidence 35765455 48999999999863 334555 666789999999998887610 34444444333222
Q ss_pred -hhhhcCCeEeeecc-----CccccccC-CCeEEEEcCCCCCC-cccch--------HHhhhcCcEEEeeecCCC-----
Q 012785 207 -ITDCVKSRLYKWAG-----DAKRFNKD-GPYIELVTSPNNPD-GSVRQ--------SVVNRSGGILVHDLAYYW----- 265 (456)
Q Consensus 207 -~~~~~g~~~~~~~~-----d~~~l~~~-~~~~i~v~~P~NPt-G~~~~--------~l~~~~~~~iI~De~y~~----- 265 (456)
.....|++++.++. |.+.++.. +++++++++||||| |.+++ ++|+++|+++|+|++|.+
T Consensus 106 ~~~~~~g~~~~~v~~~~~~~d~~~l~~~~~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~ 185 (357)
T 3lws_A 106 GLKELHPIETILVGAADRLMTLDEIKALPDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPY 185 (357)
T ss_dssp HHHHHSSCEEEECSCTTSCCCHHHHHTCCSCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHH
T ss_pred hhhhccCcEEEEecCCCCCcCHHHHhcCcCcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhh
Confidence 34556888877653 55555432 47899999999998 98876 278899999999999862
Q ss_pred --CCCCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCc--CChHHHHHHHHHHHhhhCCCCC
Q 012785 266 --PQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIG--VSKDSQLRAAKVLKVVSDSCKP 341 (456)
Q Consensus 266 --~~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~--~s~~~q~~a~~~L~~~~~~~~~ 341 (456)
.....+. ....+++.|+||.++.++. ||++.+ +++++.+.+.+.....+ .....+.++...|+.
T Consensus 186 ~~~~~~~~~--~~~d~~~~s~sK~~~~~~g--g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------- 253 (357)
T 3lws_A 186 YEKTAAEIA--GLFDSIYISFYKGLGGIAG--AILAGP-AAFCQTARIWKRRYGGDLISLYPYIVSADYYYEL------- 253 (357)
T ss_dssp HTCCHHHHH--TTSSEEEEESSSTTCCSSC--EEEEEC-HHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHH-------
T ss_pred cCCChHHHH--hcCCEEEEeccccCCCCce--EEEEcC-HHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHH-------
Confidence 1111111 1234568999999932432 999985 99999988765433322 234444444455542
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccc-cCCCCcccccccccCCCCCceEEeecCcc----HHHHHHHHHhC
Q 012785 342 SGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSV-PELPSQFCTFLGRAFEPQPAFAWLKCEQE----IEDCESFLKGN 416 (456)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~g~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~~~l~~~ 416 (456)
+.+++ +.+.++++.+.+.|++++++.+ ..+.++ +|+|++++.. .+.+.+.|+++
T Consensus 254 -------~~~~~-~~~~~~~~~l~~~L~~~~g~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~~~ 312 (357)
T 3lws_A 254 -------RKDRM-GQYYEQAKQLAEQFNALPGVHTTPEVPVS-------------NMFHLHFDGQAADISPKLEQVQEET 312 (357)
T ss_dssp -------HTTCH-HHHHHHHHHHHHHHHTSTTEEEESSSCSS-------------SEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred -------HHHHH-HHHHHHHHHHHHHHHhCCCCeeccCCCcc-------------eEEEEEecCChHHHHHHHHHHHHhc
Confidence 22222 3356778889999998866665 334443 3899998642 46778889999
Q ss_pred CEEeecCCCCCCCCCeEEEEec-----CChhHHHHHHHHHHhhhC
Q 012785 417 KILTRSGKHFGFSPKYVRISML-----DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 417 gI~v~pg~~fg~~~~~iRis~~-----~~~e~i~~~l~~L~~~l~ 456 (456)
||.++||..|+.+..++|+++. .+++++++++++|++.++
T Consensus 313 Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al~ 357 (357)
T 3lws_A 313 GLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAFS 357 (357)
T ss_dssp CEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC-
T ss_pred CeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhcC
Confidence 9999999777644559999975 378899999999998764
No 151
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.94 E-value=4.2e-25 Score=221.63 Aligned_cols=282 Identities=14% Similarity=0.185 Sum_probs=198.1
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh----hhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT----DCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~----~~~g~~~~~ 217 (456)
..++++.++++++. ++.+++++| ++++..++.++.++|| +|++++|+|+.+...+ ...|.++..
T Consensus 67 ~~~l~~~la~~~g~-------~~~i~~~sG-~~a~~~~l~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 134 (398)
T 1gc0_A 67 LNLLEARMASLEGG-------EAGLALASG-MGAITSTLWTLLRPGD----EVLLGNTLYGCTFAFLHHGIGEFGVKLRH 134 (398)
T ss_dssp HHHHHHHHHHHHTC-------SEEEEESSH-HHHHHHHHHHHCCTTC----EEEEESSCCSHHHHHHHHTGGGGTCEEEE
T ss_pred HHHHHHHHHHHhCC-------CcEEEECCH-HHHHHHHHHHHhcCCC----EEEEeCCCchhHHHHHHHHHHHcCCEEEE
Confidence 36888889988863 345555555 7999999999999999 9999999999987765 667888887
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC-CCCCCCCCCcEEEecCccc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY-TSITYPADHDLMLFTVSKS 287 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~-~~~~~~~~~~i~i~S~SK~ 287 (456)
++. |.+.++. .++++|++++|+||||.+.+ ++|+++|+++|+|++|....+ .++ ..+.++++.|+||.
T Consensus 135 ~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~--~~~~d~~~~S~sK~ 212 (398)
T 1gc0_A 135 VDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPL--ELGADLVVHSATKY 212 (398)
T ss_dssp ECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGG--GGTCSEEEEETTTT
T ss_pred ECCCCHHHHHHhcCCCCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccCCch--hhCceEEEECCccc
Confidence 765 4555543 36789999999999999987 489999999999999984321 122 24578999999999
Q ss_pred cCCCCceE-EEEEEeCHHHHH-HHHHHHhh-ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 012785 288 TGHAGTRI-GWALVKDMEVAK-KMTKYIEL-NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQL 364 (456)
Q Consensus 288 ~g~~G~Ri-G~l~~~~~~~~~-~l~~~~~~-~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 364 (456)
++.+|.|+ ||++++ ++.++ .+...... .+.+.+++.+.++.+.++ .+....+...++.+.+
T Consensus 213 ~~~~~~~~~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------------~~~~~~~~~~~~~~~l 276 (398)
T 1gc0_A 213 LSGHGDITAGIVVGS-QALVDRIRLQGLKDMTGAVLSPHDAALLMRGIK---------------TLNLRMDRHCANAQVL 276 (398)
T ss_dssp TTCSSSCCCEEEEEC-HHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHT---------------THHHHHHHHHHHHHHH
T ss_pred cCCCCCCeEEEEEEC-hHHHHHHHHHHhhccCCCCCCHHHHHHHHhccc---------------hHHHHHHHHHHHHHHH
Confidence 99999998 999996 66555 56655544 455678888887777665 2334556667777888
Q ss_pred HHHHHhcCCccccCCC-----CcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeec---CCC-----------
Q 012785 365 RMAVQKSGLFSVPELP-----SQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRS---GKH----------- 425 (456)
Q Consensus 365 ~~~L~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~p---g~~----------- 425 (456)
.+.|++++.+.....+ .++ ....+.....++++.+++++..+.+.+.+.+.||.++. |+.
T Consensus 277 ~~~L~~~~~v~~v~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~ 355 (398)
T 1gc0_A 277 AEFLARQPQVELIHYPGLASFPQY-TLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMT 355 (398)
T ss_dssp HHHHHTCTTEEEEEEC-----------------CCTTEEEEEETTHHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTT
T ss_pred HHHHhcCCCeeEEECCCCCCCcCH-HHHHhhCCCCceEEEEEECCCHHHHHHHHHhCCCceeccCCCCcceeeecccccc
Confidence 8888876433211000 000 00000011345677778865556788888899988876 422
Q ss_pred -----------CCCCCCeEEEEecC--ChhHHHHHHHHHHhh
Q 012785 426 -----------FGFSPKYVRISMLD--RDENYNLFVQRLSKI 454 (456)
Q Consensus 426 -----------fg~~~~~iRis~~~--~~e~i~~~l~~L~~~ 454 (456)
.|..++.||||++. ++++++.+.+.|+++
T Consensus 356 ~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 356 HSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp TSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 11225899999976 567788888877764
No 152
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.94 E-value=3.3e-26 Score=231.84 Aligned_cols=277 Identities=12% Similarity=0.042 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc--------CCCCCCCcEEEEeCCCCCCh----------
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS--------SQDASEPISVVSAAPYYSSY---------- 204 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~--------~~gd~~~~~Vlv~~P~y~~~---------- 204 (456)
.++|++++++++. ++++|++|+|+++++++++.++. ++|| +|++++|+|+.+
T Consensus 64 ~~l~~~la~~~g~------~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd----~vl~~~p~y~~~~~i~~~~~~h 133 (432)
T 3a9z_A 64 NTARASLAKMIGG------KPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGR----TVDQISPEEGTRPHFITCTVEH 133 (432)
T ss_dssp HHHHHHHHHHHTC------CGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEEEETTCC
T ss_pred HHHHHHHHHHcCC------CcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCc----cccccccccccCCeEEEecCcc
Confidence 5899999998863 35689999999999999999886 5888 999999999986
Q ss_pred -------hhhhhhcCCeEeeeccC-------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcC--------
Q 012785 205 -------PSITDCVKSRLYKWAGD-------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSG-------- 254 (456)
Q Consensus 205 -------~~~~~~~g~~~~~~~~d-------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~-------- 254 (456)
...++..|.+++.++.+ .+.++. .++++|++++||||||.+++ ++|++++
T Consensus 134 ~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~ 213 (432)
T 3a9z_A 134 DSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGL 213 (432)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhccCCceEEEEECcccCcccccCHHHHHHHHHhcCcccccccC
Confidence 23344568888877654 333432 26789999999999999988 3788988
Q ss_pred --cEEEeeecCCCCCCCCCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHHH-HHHHHHH-------HhhccCcCChH
Q 012785 255 --GILVHDLAYYWPQYTSIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEV-AKKMTKY-------IELNTIGVSKD 323 (456)
Q Consensus 255 --~~iI~De~y~~~~~~~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~-~~~l~~~-------~~~~~~~~s~~ 323 (456)
+++|+||+|.... .++. ...+.+++++|+||.+| .|+||++++ +++ ...+... ......+.+..
T Consensus 214 ~~~~livDea~~~~~-~~~~~~~~~~d~~~~s~~K~~g---~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (432)
T 3a9z_A 214 PRVLVHTDAAQALGK-RRVDVEDLGVDFLTIVGHKFYG---PRIGALYVR-GVGKLTPLYPMLFGGGQERNFRPGTENTP 288 (432)
T ss_dssp CCCEEEEECTTTTTT-SCCCHHHHCCSEEEEEGGGTTC---CSCEEEEET-TBTTTBCCCCSCCSSCGGGGTSCSCCCHH
T ss_pred CceEEEEEchhhhCC-cccChhhcCCCEEEEehhHhcC---CcceEEEEc-cccccCCcCceeecCCccccccCCCcCHH
Confidence 9999999997532 2221 11134578999999775 469999997 544 2222211 12223556778
Q ss_pred HHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcccc--CCCCcccccccccCCCCCceEEee
Q 012785 324 SQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVP--ELPSQFCTFLGRAFEPQPAFAWLK 401 (456)
Q Consensus 324 ~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~g~~~~~~~~~~~~~~~f~~~~ 401 (456)
.+.++.++++.+ ++++++.+++++++++.+.+.|+++.++.+. .+..+. . ..+..+++.
T Consensus 289 ~~~a~~aal~~~-----------~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~-----~---~~~~~~~~~ 349 (432)
T 3a9z_A 289 MIAGLGKAADLV-----------SENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGV-----E---RLPNTCNFS 349 (432)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTC-----C---BCTTEEEEE
T ss_pred HHHHHHHHHHHH-----------HhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcc-----c---CCCCEEEEE
Confidence 887777777732 3467888999999999999999875322221 221000 0 011134444
Q ss_pred cCc---cHHHHHHHHHhCCEEeecCCCCC---------------C----CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 402 CEQ---EIEDCESFLKGNKILTRSGKHFG---------------F----SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 402 ~~~---~~~~~~~~l~~~gI~v~pg~~fg---------------~----~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
++. +.+.+.+.+ .+|.+.+|..|. . ..+++||++.. +++++++++++|++++
T Consensus 350 ~~~~~~~~~~~~~~l--~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~ 425 (432)
T 3a9z_A 350 IQGSQLRGYMVLAQC--QTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAV 425 (432)
T ss_dssp ECSTTCCHHHHHHHC--SSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred eCCCCCcHHHHHHHh--cCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 432 344444444 478888876552 1 13799999975 7999999999999875
No 153
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.94 E-value=1.6e-25 Score=220.37 Aligned_cols=306 Identities=9% Similarity=-0.006 Sum_probs=208.0
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccCH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTGS 172 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~ 172 (456)
+.+|+|+.+.+..+ ++.+.+... ... ..|....| ..++++++++++.. +| .++++|++|+|+
T Consensus 13 p~~i~l~~~~~~~~-~~~v~~a~~-----~~~---~~~~~~~g-----~~~~~~~~~~~l~~~~g---~~~~~v~~~~g~ 75 (359)
T 1svv_A 13 PKPYSFVNDYSVGM-HPKILDLMA-----RDN---MTQHAGYG-----QDSHCAKAARLIGELLE---RPDADVHFISGG 75 (359)
T ss_dssp --CEECSCSCSSCC-CHHHHHHHH-----HHT---TCCCCSTT-----CSHHHHHHHHHHHHHHT---CTTSEEEEESCH
T ss_pred CeeEEecCCCcCCC-CHHHHHHHH-----HHH---hhcccccc-----ccHHHHHHHHHHHHHhC---CCCccEEEeCCc
Confidence 45799998776633 333433211 111 13555556 47788888888754 45 235789999999
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh--hhhhcCCeEeeeccC-----cccccc----C------CCeEEEE
Q 012785 173 TQLFQAALYALSSQDASEPISVVSAAPYYSSYPS--ITDCVKSRLYKWAGD-----AKRFNK----D------GPYIELV 235 (456)
Q Consensus 173 ~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~--~~~~~g~~~~~~~~d-----~~~l~~----~------~~~~i~v 235 (456)
++++..+++++.++|| +|++++|+|+.+.. .++..|.+++.++.| .+.++. . +++++++
T Consensus 76 t~a~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~v~~ 151 (359)
T 1svv_A 76 TQTNLIACSLALRPWE----AVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYI 151 (359)
T ss_dssp HHHHHHHHHHHCCTTE----EEEEETTSHHHHSSTTHHHHTTCCEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEE
T ss_pred hHHHHHHHHHHhCCCC----EEEEcccchHHHHHHHHHhcCCCeeEEEeCCCCeecHHHHHHHHHHHHhccCCCceEEEE
Confidence 9999999999999999 99999999999888 478889998877754 344432 2 2789999
Q ss_pred cCCCCCCcccch--------HHhhhcCcEEEeeecCCCC--CCCCCCCC-----CCCcEEEecCccccCCCCceEEEEEE
Q 012785 236 TSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWP--QYTSITYP-----ADHDLMLFTVSKSTGHAGTRIGWALV 300 (456)
Q Consensus 236 ~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~--~~~~~~~~-----~~~~i~i~S~SK~~g~~G~RiG~l~~ 300 (456)
++| ||||.+++ ++|+++|+++|+||+|.+. ...+.... ...+++..|.+|..+ + ..+|++++
T Consensus 152 ~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~-~-~~~g~l~~ 228 (359)
T 1svv_A 152 SNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGG-M-FGEALIIL 228 (359)
T ss_dssp ESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTC-S-SCEEEEEC
T ss_pred EcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCCC-C-CceEEEEE
Confidence 998 79999976 2789999999999999421 11122111 123588899999643 3 56899998
Q ss_pred eCHHHHHHHHHHHhh--ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Q 012785 301 KDMEVAKKMTKYIEL--NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPE 378 (456)
Q Consensus 301 ~~~~~~~~l~~~~~~--~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 378 (456)
+ +++++.+...... .....+......+.++++ +..+++.+++++++++.+.+.| +.+++.+..
T Consensus 229 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------------~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~ 293 (359)
T 1svv_A 229 N-DALKPNARHLIKQRGALMAKGWLLGIQFEVLMK-------------DNLFFELGAHSNKMAAILKAGL-EACGIRLAW 293 (359)
T ss_dssp S-GGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTS-------------TTHHHHHHHHHHHHHHHHHHHH-HHTTCCBSS
T ss_pred c-ccHHHHHHHHHhcCCcccccchhhHHHHHHHHh-------------hhhHHHHHHHHHHHHHHHHHHh-ccCCeEEcc
Confidence 6 8887777665321 111222222222333343 2345778889999999999999 455566665
Q ss_pred CCCcccccccccCCCCCceEEeecCccHHHHHHHHHhC-CEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 379 LPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGN-KILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 379 ~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~-gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
+.+++ |+|++++ +.+.+.|.++ ||.+.+.. ...++++||+++ .+++++++++++|++++
T Consensus 294 ~~~~~-------------~~~~~~~---~~~~~~l~~~~gi~v~~~~--~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 355 (359)
T 1svv_A 294 PSASN-------------QLFPILE---NTMIAELNNDFDMYTVEPL--KDGTCIMRLCTSWATEEKECHRFVEVLKRLV 355 (359)
T ss_dssp CCSSS-------------EECBEEE---HHHHHHHTTTEECEEEEEE--TTTEEEEEEECCTTCCHHHHHHHHHHHHHC-
T ss_pred CCccc-------------eEEEEcC---HHHHHHHHHhcCEEEEecc--cCCCceEEEEccCcCCHHHHHHHHHHHHHHH
Confidence 55555 7888775 3566666666 99993211 124679999875 38999999999999876
Q ss_pred C
Q 012785 456 S 456 (456)
Q Consensus 456 ~ 456 (456)
+
T Consensus 356 ~ 356 (359)
T 1svv_A 356 A 356 (359)
T ss_dssp -
T ss_pred h
Confidence 3
No 154
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.93 E-value=2.2e-25 Score=220.38 Aligned_cols=278 Identities=12% Similarity=0.036 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHH-hcCccCCCc-e-EEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC--hhhhhhhcCCeEee
Q 012785 143 PEFAKEVVRLHKV-VGNAITENH-H-IVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS--YPSITDCVKSRLYK 217 (456)
Q Consensus 143 ~~lr~aia~~~~~-~g~~~~~~~-~-I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~--~~~~~~~~g~~~~~ 217 (456)
.++++++.+.+.. .|. +++ + +++|+|+++++++++.+++++|| +|++.+|.+.. +...++..| +++.
T Consensus 48 ~~~~~~~~~~la~~~g~---~~~~~~i~~t~g~t~a~~~~~~~l~~~gd----~vl~~~~~~~~~~~~~~~~~~g-~~~~ 119 (362)
T 2c0r_A 48 EAVHNEAQARLLALLGN---PTGYKVLFIQGGASTQFAMIPMNFLKEGQ----TANYVMTGSWASKALKEAKLIG-DTHV 119 (362)
T ss_dssp HHHHHHHHHHHHHHTTC---CSSEEEEEESSHHHHHHHHHHHHHCCTTC----EEEEEECSHHHHHHHHHHHHHS-CEEE
T ss_pred HHHHHHHHHHHHHHhCC---CCCcEEEEECCCchHHHHHHHHhcCCCCC----eEEEEecCcHhHHHHHHHHHhC-CeEE
Confidence 3445555555532 332 232 5 57889999999999999999999 99888765443 235667778 8776
Q ss_pred eccC----------ccccc-cCCCeEEEEcCCCCCCcccchHHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCcc
Q 012785 218 WAGD----------AKRFN-KDGPYIELVTSPNNPDGSVRQSVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSK 286 (456)
Q Consensus 218 ~~~d----------~~~l~-~~~~~~i~v~~P~NPtG~~~~~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK 286 (456)
++.+ .+.++ ..++++|++++|+||||.+++++.+-+|+++|+|++|..... ++ ...+.+++++|+||
T Consensus 120 v~~~~~~~~~~~~~~~~~~i~~~t~~v~~~~~~n~tG~~~~~l~~i~~~~vivD~a~~~~~~-~~-~~~~~d~~~~s~~K 197 (362)
T 2c0r_A 120 AASSEASNYMTLPKLQEIQLQDNAAYLHLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILSR-PF-DLNQFGLVYAGAQK 197 (362)
T ss_dssp EEECGGGTTCSCCCGGGCCCCTTEEEEEEESEETTTTEECSSCCCCTTSCEEEECTTTTTSS-CC-CGGGCSEEEEETTT
T ss_pred EecccccccccCCCHHHcccCCCcCEEEEeCCcCccceecccccccCCCEEEEEChhhccCC-cc-chhHCcEEEEeccc
Confidence 6543 11221 236789999999999999866543338999999999985322 12 11223689999999
Q ss_pred ccCCCCceEEEEEEeCHHHHHHHHHH------------HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHH
Q 012785 287 STGHAGTRIGWALVKDMEVAKKMTKY------------IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTN 354 (456)
Q Consensus 287 ~~g~~G~RiG~l~~~~~~~~~~l~~~------------~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~ 354 (456)
.+|++| +||++++ +++++.+.+. ......+++...|.++.++|+.+.+ ...++..+
T Consensus 198 ~~g~~G--~G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~---------~~~~~~~~ 265 (362)
T 2c0r_A 198 NLGPSG--VTVVIVR-EDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEE---------RGGLEGVQ 265 (362)
T ss_dssp TTCCSS--CEEEEEE-GGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHH---------TTHHHHHH
T ss_pred cccCcC--cEEEEEc-HHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHH---------hCCHHHHH
Confidence 999888 9999997 7776555431 1123457788889998888874321 11578889
Q ss_pred HHHHHHHHHHHHHHHhcCCc-cccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCCCCC
Q 012785 355 HQMSTRWKQLRMAVQKSGLF-SVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGFSPK 431 (456)
Q Consensus 355 ~~~~~~~~~l~~~L~~~~~~-~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~ 431 (456)
++++++++.+.+.|++++.+ .+..+.. . ..+.++|+.++. +...+.+.|.++||.+.||..| .+
T Consensus 266 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~L~~~gi~~~~g~~~---~~ 332 (362)
T 2c0r_A 266 QANRKKASLIYDAIDQSGGFYRGCVDVD-S---------RSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRS---VG 332 (362)
T ss_dssp HHHHHHHHHHHHHHHTSTTSSEESSCGG-G---------BCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTT---TC
T ss_pred HHHHHHHHHHHHHHHHcCCccccCCChH-H---------cCCcEEEEEcCCcchHHHHHHHHHHCCCeeccCCCC---CC
Confidence 99999999999999987633 4322110 0 112257888764 4567778899999999998766 45
Q ss_pred eEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 432 YVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 432 ~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
++|||++. ++|+++++++.|++++
T Consensus 333 ~iRis~~~~~~~e~i~~l~~~l~~~~ 358 (362)
T 2c0r_A 333 GLRASIYNAVPYESCEALVQFMEHFK 358 (362)
T ss_dssp SEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 79999974 7899999999998875
No 155
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.93 E-value=1.1e-24 Score=217.93 Aligned_cols=282 Identities=16% Similarity=0.191 Sum_probs=200.0
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh----hhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI----TDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~----~~~~g~~~~~ 217 (456)
..+|+++++++++. + ++++++++++++.+++.++.++|| +|++++|+|+.+... ++..|.++..
T Consensus 61 ~~~l~~~la~~~g~-------~-~~i~~~sG~~ai~~~~~~~~~~gd----~vl~~~~~y~~~~~~~~~~~~~~g~~~~~ 128 (389)
T 3acz_A 61 VEQFEEMVCSIEGA-------A-GSAAFGSGMGAISSSTLAFLQKGD----HLIAGDTLYGCTVSLFTHWLPRFGIEVDL 128 (389)
T ss_dssp HHHHHHHHHHHHTC-------S-EEEEESSHHHHHHHHHTTTCCTTC----EEEEESSCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhCC-------C-eEEEeCCHHHHHHHHHHHHhCCCC----EEEEeCCCchHHHHHHHHHHHHcCCEEEE
Confidence 36899999999863 2 455555567999999999999999 999999999987665 5778999888
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC-CCCCCCCCCcEEEecCccc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY-TSITYPADHDLMLFTVSKS 287 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~-~~~~~~~~~~i~i~S~SK~ 287 (456)
++. |.+.++. .++++|++++|+||||.+++ ++|+++|+++|+|++|..+.. .++ ..+.+++++|+||.
T Consensus 129 v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~--~~~~di~~~S~sK~ 206 (389)
T 3acz_A 129 IDTSDVEKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPL--ELGADIALHSVSKY 206 (389)
T ss_dssp ECTTCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGG--GTTCSEEEEETTTT
T ss_pred ECCCCHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccccCcc--ccCCeEEEECChhh
Confidence 775 5555543 36789999999999999987 489999999999999986432 233 24678999999999
Q ss_pred cCCCCceE-EEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 012785 288 TGHAGTRI-GWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRM 366 (456)
Q Consensus 288 ~g~~G~Ri-G~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 366 (456)
++.+|.|+ ||+++++++++++++........+.++..+.++...|+. +....+...++.+.+.+
T Consensus 207 ~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~---------------l~~r~~~~~~~~~~l~~ 271 (389)
T 3acz_A 207 INGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKT---------------LPIRMQIHMENGLKVAK 271 (389)
T ss_dssp TTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHHH
T ss_pred ccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCccH---------------HHHHHHHHHHHHHHHHH
Confidence 99999998 999997338988888776545566778777777776651 22334455566777777
Q ss_pred HHHhcCCccccCCCC-----cccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeec---C------CCC------
Q 012785 367 AVQKSGLFSVPELPS-----QFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRS---G------KHF------ 426 (456)
Q Consensus 367 ~L~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~p---g------~~f------ 426 (456)
.|++++.+.....++ ++ ....+.....++++.+.+++ .+.+.+.+.+.||.+++ | ..+
T Consensus 272 ~l~~~~~v~~~~~~~L~~~~~~-~~~~~~~~g~g~~~~~~l~~-~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~ 349 (389)
T 3acz_A 272 FLEQHEKIVKVNHPGLESFPGH-DIAKKQMTGYGSTFLFEMKS-FEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHA 349 (389)
T ss_dssp HHHHCTTEEEEECTTSTTSTTH-HHHHHHCSSCCSEEEEEESS-HHHHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTTS
T ss_pred HHHcCCCeeEEECCCCCCCccH-HHHHhhCCCCCeEEEEEECC-HHHHHHHHHhCCCcEECcCCCCcccEeeCCcccccc
Confidence 887754221111000 00 00000111235577778865 66788888899998887 4 222
Q ss_pred ----------CCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 427 ----------GFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 427 ----------g~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|..++.||+|++. ++.+++++.|.+.++
T Consensus 350 ~~~~~~~~~~g~~~~~iRlsvg~--~~~~~li~~l~~al~ 387 (389)
T 3acz_A 350 AVPENIMRKQGITPELVRISVGI--ENVDDIIADLKQALE 387 (389)
T ss_dssp SSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHHHT
T ss_pred cCCHHHHHhcCCCcCeEEEEecc--CCHHHHHHHHHHHHh
Confidence 2236899999854 366677777776653
No 156
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.93 E-value=6e-25 Score=218.14 Aligned_cols=280 Identities=10% Similarity=0.032 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh--hhhhhcCCeEeeecc
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP--SITDCVKSRLYKWAG 220 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~--~~~~~~g~~~~~~~~ 220 (456)
.++++.++++++ .+. +.+.+++|+|++++++++++++.++|| +|++++|+|.... ..+...|.+++.++.
T Consensus 55 ~~~~~~la~~~g---~~~-~~~~i~~~~ggt~al~~~~~~~~~~gd----~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~ 126 (376)
T 3f0h_A 55 LENEKFMLEYAK---APE-GSKAVFMTCSSTGSMEAVVMNCFTKKD----KVLVIDGGSFGHRFVQLCEIHEIPYVALKL 126 (376)
T ss_dssp HHHHHHHHHHHT---CCT-TCEEEEESSCHHHHHHHHHHHHCCTTC----CEEEEESSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHhC---CCC-CceEEEEcCChhHHHHHHHHhccCCCC----eEEEEeCChhhHHHHHHHHHcCCceEEEeC
Confidence 344455555543 321 124456699999999999999999999 9999998776644 346667888776554
Q ss_pred ------Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCcc
Q 012785 221 ------DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSK 286 (456)
Q Consensus 221 ------d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK 286 (456)
|.+.++. .+++++++++||||||.+++ ++|+++|+++|+|++|.......-....+.+++++|+||
T Consensus 127 ~~~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K 206 (376)
T 3f0h_A 127 EHGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQK 206 (376)
T ss_dssp CTTCCCCHHHHHTTTTSCCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTT
T ss_pred CCCCCCCHHHHHHhhccCceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCccccccccCccEEEecCcc
Confidence 4444543 36789999999999999987 489999999999999885332211111235799999999
Q ss_pred ccC-CCCceEEEEEEeCHHHHHHHHHHHh-----------------hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchh
Q 012785 287 STG-HAGTRIGWALVKDMEVAKKMTKYIE-----------------LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDEC 348 (456)
Q Consensus 287 ~~g-~~G~RiG~l~~~~~~~~~~l~~~~~-----------------~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~ 348 (456)
.++ .+| +|+++++ +++++++..... ......+...+.++.+.++.+.+ ..
T Consensus 207 ~l~~~~G--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~---------~~ 274 (376)
T 3f0h_A 207 VLACPPG--ISVIVLA-PRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKK---------HG 274 (376)
T ss_dssp TTCCCSS--CEEEEEC-HHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHH---------TT
T ss_pred cccCCCc--eEEEEEC-HHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHH---------hc
Confidence 998 666 6788886 888888764211 01234444444555555553221 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhC-CEEeecCCCCC
Q 012785 349 FFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGN-KILTRSGKHFG 427 (456)
Q Consensus 349 ~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~-gI~v~pg~~fg 427 (456)
.+++.+++++++++.+.+.|++++ +.+..+.... ..+.+..-..+.+.+.+.|.++ ||.+++|...
T Consensus 275 ~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~- 341 (376)
T 3f0h_A 275 GADAEVARIASQAADFRAKIKDLP-FELVSESPAN-----------GVTSVHPTTANAYDIFLKLKDEYGIWICPNGGE- 341 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSS-EEECCSSBBT-----------TEEEEEESSSCHHHHHHHHHHHSSEECEECCGG-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcC-CccCccccCc-----------eEEEEeCCCCCHHHHHHHHHHhCCEEEecCccc-
Confidence 477888899999999999998765 3333222111 0122222122566677777766 9999998432
Q ss_pred CCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 428 FSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 428 ~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
..++++||++. .+++++++++++|++++
T Consensus 342 ~~~~~lRis~~~~~t~e~i~~~~~~l~~~l 371 (376)
T 3f0h_A 342 MKDTIFRVGHIGALTHEDNTTLVNAFKDLQ 371 (376)
T ss_dssp GTTTCEEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 24789999985 38999999999999876
No 157
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.93 E-value=3.1e-25 Score=223.35 Aligned_cols=274 Identities=12% Similarity=0.084 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc------CCCCCCCcEEE-EeCCCCCChhhhh----hhc
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS------SQDASEPISVV-SAAPYYSSYPSIT----DCV 211 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~------~~gd~~~~~Vl-v~~P~y~~~~~~~----~~~ 211 (456)
.+++++++++++. ++++|++|+|+++++.+++.++. .+|| +|+ ++.++|+.+...+ +..
T Consensus 74 ~~l~~~la~~~g~------~~~~v~~~~g~t~al~~al~~~~~~~~~~~~gd----~vii~~~~~~~~~~~~~~~~~~~~ 143 (416)
T 1qz9_A 74 ERLGNRLATLIGA------RDGEVVVTDTTSINLFKVLSAALRVQATRSPER----RVIVTETSNFPTDLYIAEGLADML 143 (416)
T ss_dssp HHHHHHHHTTTTC------CTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTC----CEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC------CcccEEEeCChhHHHHHHHHhhcccccccCCCC----cEEEEcCCCCCchHHHHHHHHHHh
Confidence 6788888887753 35689999999999999988876 8888 654 4555666544332 233
Q ss_pred --CCeEeeeccCcccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEE
Q 012785 212 --KSRLYKWAGDAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLM 280 (456)
Q Consensus 212 --g~~~~~~~~d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~ 280 (456)
|++++.++. .+.++. .++++|++++|+||||.+++ ++|+++|+++|+|++|.... .+.. ...+.+++
T Consensus 144 ~~g~~~~~v~~-~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~-~~~~~~~~~~d~~ 221 (416)
T 1qz9_A 144 QQGYTLRLVDS-PEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGA-VPVDLHQAGADYA 221 (416)
T ss_dssp CSSCEEEEESS-GGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTT-SCCCHHHHTCSEE
T ss_pred cCCceEEEeCc-HHHHHHHhCCCceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccC-cCCChhhcCCCEE
Confidence 888888775 455432 36789999999999999987 48999999999999998422 2211 11245799
Q ss_pred EecCccccCCCCceE-EEEEEeCHHHHHHHHHHH-----------------------hhccCcCChHHHHHHHHHHHhhh
Q 012785 281 LFTVSKSTGHAGTRI-GWALVKDMEVAKKMTKYI-----------------------ELNTIGVSKDSQLRAAKVLKVVS 336 (456)
Q Consensus 281 i~S~SK~~g~~G~Ri-G~l~~~~~~~~~~l~~~~-----------------------~~~~~~~s~~~q~~a~~~L~~~~ 336 (456)
++|++|.++ +|.++ ||++++ +++++.+.... .....+.+...+.++.++|+.+.
T Consensus 222 ~~s~~K~l~-~g~~~~g~l~~~-~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~ 299 (416)
T 1qz9_A 222 IGCTYKYLN-GGPGSQAFVWVS-PQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFA 299 (416)
T ss_dssp EECSSSTTC-CCTTCCCEEEEC-TTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHT
T ss_pred EecCcccCC-CCCCCeEEEEEC-HHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 999999885 77787 999997 77766554321 11123456677777777777432
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc-C--CccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHH
Q 012785 337 DSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS-G--LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFL 413 (456)
Q Consensus 337 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~--~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l 413 (456)
. +.+++.+++++++++.+.+.|++. + ++.+..+.+.. ..++++|+++++ .+.+.+.|
T Consensus 300 ~----------~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~-~~~l~~~l 359 (416)
T 1qz9_A 300 Q----------TDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHA---------KRGSHVSFEHPE-GYAVIQAL 359 (416)
T ss_dssp T----------SCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGG---------GBCSEEEEECTT-HHHHHHHH
T ss_pred h----------cCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHH---------HcCCEEEEecCC-HHHHHHHH
Confidence 2 346778889999999999999885 4 45554443210 012378888874 56677888
Q ss_pred HhCCEEeecCCCCCCCCCeEEEEecC---ChhHHHHHHHHHHhhh
Q 012785 414 KGNKILTRSGKHFGFSPKYVRISMLD---RDENYNLFVQRLSKIL 455 (456)
Q Consensus 414 ~~~gI~v~pg~~fg~~~~~iRis~~~---~~e~i~~~l~~L~~~l 455 (456)
.++||.+... .++++||+++. +++++++++++|++++
T Consensus 360 ~~~gi~~~~~-----~~~~lRis~~~~~~t~~~i~~~~~~l~~~~ 399 (416)
T 1qz9_A 360 IDRGVIGDYR-----EPRIMRFGFTPLYTTFTEVWDAVQILGEIL 399 (416)
T ss_dssp HTTTEECEEE-----TTTEEEEECCTTTCCHHHHHHHHHHHHHHH
T ss_pred HhCCcEeccC-----CCCeEEEeCcccCCCHHHHHHHHHHHHHHH
Confidence 8999998641 37899999962 8999999999999875
No 158
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.93 E-value=1.9e-25 Score=226.60 Aligned_cols=270 Identities=11% Similarity=0.049 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc---------CCC-CCCCcEEEEeCCCCCChhhhh-hhc
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS---------SQD-ASEPISVVSAAPYYSSYPSIT-DCV 211 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~---------~~g-d~~~~~Vlv~~P~y~~~~~~~-~~~ 211 (456)
.+|++.++++++ .++|++|+|++++++.+++++. .+| + +|++.+|+|+++...+ ...
T Consensus 110 ~~l~~~la~~~g--------~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~----~vi~~~~~yhg~~~~~~~~~ 177 (433)
T 1z7d_A 110 GICERYLTNLLG--------YDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMA----KIVVCKNNFSGRTLGCISAS 177 (433)
T ss_dssp HHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCC----EEEEETTC------------
T ss_pred HHHHHHHHhhcC--------CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCC----eEEEEeCCcCCcchhhhccc
Confidence 566666666652 3689999999999999998764 356 6 9999999999875533 322
Q ss_pred C------------CeEeeecc-Cccccc----cCCCeEEEEcCCCCCCcccc-h--------HHhhhcCcEEEeeecCCC
Q 012785 212 K------------SRLYKWAG-DAKRFN----KDGPYIELVTSPNNPDGSVR-Q--------SVVNRSGGILVHDLAYYW 265 (456)
Q Consensus 212 g------------~~~~~~~~-d~~~l~----~~~~~~i~v~~P~NPtG~~~-~--------~l~~~~~~~iI~De~y~~ 265 (456)
| ..+..++. |.+.++ ..++++|+++..+|+||.+. + ++|+++|+++|+||+|.+
T Consensus 178 g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g 257 (433)
T 1z7d_A 178 TTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTG 257 (433)
T ss_dssp --------------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred CCccccccCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccC
Confidence 3 23333332 555553 23566666644467789764 2 389999999999999986
Q ss_pred CCCCCCC---CCCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCC
Q 012785 266 PQYTSIT---YPADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKP 341 (456)
Q Consensus 266 ~~~~~~~---~~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~ 341 (456)
..+.+.. ...+...-+.||||.+| +| +|+||++++ +++++.+.......+++.+++++.++.+.|+.+.+.
T Consensus 258 ~g~~g~~~~~~~~~~~~di~t~sK~l~-~G~~~~G~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~--- 332 (433)
T 1z7d_A 258 LGRTGKLLCVHHYNVKPDVILLGKALS-GGHYPISAVLAN-DDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINE--- 332 (433)
T ss_dssp TTTTSSSSGGGGGTCCCSEEEECGGGG-TTSSCCEEEEEC-HHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHT---
T ss_pred CCcCCcchhhHhcCCCCCEEEECcccc-CCCCCeEEEEEC-HHHHhhhccccccccCCCCHHHHHHHHHHHHHHHhc---
Confidence 4333211 11111111338999999 89 999999997 888887765444567889999999999988854321
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhc-CCccccCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCC
Q 012785 342 SGSEDECFFEFTNHQMSTRWKQLRMAVQKS-GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNK 417 (456)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~g 417 (456)
...++++++++.+.+.|+++ ..+.... ..++.++|+|+.++. +...+.+.|.++|
T Consensus 333 ----------~~~~~~~~~~~~l~~~L~~l~~~~~~~~-----------~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~G 391 (433)
T 1z7d_A 333 ----------KLCENAEKLGGPFLENLKRELKDSKIVR-----------DVRGKGLLCAIEFKNELVNVLDICLKLKENG 391 (433)
T ss_dssp ----------THHHHHHHHHHHHHHHHHHHHTTCTTEE-----------EEEEETTEEEEEECTTTCCHHHHHHHHHHTT
T ss_pred ----------cHHHHHHHHHHHHHHHHHHHHHhCCCeE-----------EEEeeeeEEEEEEccChhHHHHHHHHHHHCC
Confidence 34556677777777777664 1111100 001233478888864 3567888888899
Q ss_pred EEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 418 ILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 418 I~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
|.++|+ +.+++|++++ .+++++++++++|++++
T Consensus 392 v~v~~~-----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l 426 (433)
T 1z7d_A 392 LITRDV-----HDKTIRLTPPLCITKEQLDECTEIIVKTV 426 (433)
T ss_dssp EECCEE-----TTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred eEEecC-----CCCEEEEECCcCCCHHHHHHHHHHHHHHH
Confidence 999985 3689999765 48999999999998875
No 159
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.93 E-value=9.8e-25 Score=221.74 Aligned_cols=311 Identities=13% Similarity=0.025 Sum_probs=208.8
Q ss_pred CCCCeEEecCCCCC--CC-chhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 92 GGERIINVDHGDPT--MY-EKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~p~--~~-~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
.++..+|+..|.+. +. .++.+.++.. ..+.........|+... ..+|++.++++++ .++|++
T Consensus 74 ~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~-~~~~~~~~~~~~~~~~~------~~~l~~~la~~~g--------~~~v~~ 138 (439)
T 2oat_A 74 EGRKYFDFLSSYSAVNQGHCHPKIVNALK-SQVDKLTLTSRAFYNNV------LGEYEEYITKLFN--------YHKVLP 138 (439)
T ss_dssp TCCEEEESSGGGGTTTTCBTCHHHHHHHH-HHHTTCSCCCTTSEESS------HHHHHHHHHHHHT--------CSEEEE
T ss_pred CCCEEEEccCCcccccCCCCCHHHHHHHH-HHHHhcCcccCccCCHH------HHHHHHHHHHhcC--------CCEEEE
Confidence 46678999887543 32 4444443322 11222211111232222 3788888888763 368999
Q ss_pred ccCHHHHHHHHHHHhc---------CCC-CCCCcEEEEeCCCCCChhh-hhhhcC------------CeEeeecc-Cccc
Q 012785 169 GTGSTQLFQAALYALS---------SQD-ASEPISVVSAAPYYSSYPS-ITDCVK------------SRLYKWAG-DAKR 224 (456)
Q Consensus 169 t~G~~~al~~~~~~l~---------~~g-d~~~~~Vlv~~P~y~~~~~-~~~~~g------------~~~~~~~~-d~~~ 224 (456)
++|++++++.+++++. .+| + +|++.+|+|+++.. .....| .+++.++. |.+.
T Consensus 139 ~~sGseA~~~al~~~~~~~~~~~g~~~g~~----~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~~~ 214 (439)
T 2oat_A 139 MNTGVEAGETACKLARKWGYTVKGIQKYKA----KIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPA 214 (439)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTTCCCTTCC----EEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSSCHHH
T ss_pred eCCHHHHHHHHHHHHHHHhhhccCCCCCCC----eEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCCCHHH
Confidence 9999999999999875 345 6 89999999998754 333333 23444432 5555
Q ss_pred ccc----CCCeEEEEcCCCCCCcccc-h--------HHhhhcCcEEEeeecCCCCCCCCCC---CCC--CCcEEEecCcc
Q 012785 225 FNK----DGPYIELVTSPNNPDGSVR-Q--------SVVNRSGGILVHDLAYYWPQYTSIT---YPA--DHDLMLFTVSK 286 (456)
Q Consensus 225 l~~----~~~~~i~v~~P~NPtG~~~-~--------~l~~~~~~~iI~De~y~~~~~~~~~---~~~--~~~i~i~S~SK 286 (456)
++. .++++++++..+|++|.+. + ++|+++|+++|+||+|.+..+.+.. ... ..++ .||||
T Consensus 215 le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di--~t~sK 292 (439)
T 2oat_A 215 LERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDI--VLLGK 292 (439)
T ss_dssp HHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSE--EEECG
T ss_pred HHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCcE--EEecc
Confidence 542 3456666644467789754 2 3899999999999999864333211 111 1233 39999
Q ss_pred ccCCCC-ceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 287 STGHAG-TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 287 ~~g~~G-~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
.++ +| +|+||++++ +++++.+.......+++.+++++.++.+.|+.+.+ +...++++++++.+.
T Consensus 293 ~l~-~G~~~~G~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~-------------~~~~~~~~~~~~~l~ 357 (439)
T 2oat_A 293 ALS-GGLYPVSAVLCD-DDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEE-------------ENLAENADKLGIILR 357 (439)
T ss_dssp GGG-TTSSCCEEEEEC-HHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH-------------TTHHHHHHHHHHHHH
T ss_pred ccc-CCCCCeEEEEEC-HHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhh-------------hhHHHHHHHHHHHHH
Confidence 999 79 999999997 88888776554456788999999999988885422 135667888888999
Q ss_pred HHHHhcCCccccCCCCcccccccccCCCCCceEEeecCcc----HHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec--C
Q 012785 366 MAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQE----IEDCESFLKGNKILTRSGKHFGFSPKYVRISML--D 439 (456)
Q Consensus 366 ~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~--~ 439 (456)
+.|++++ +.+.. ..++.++|+|+.++.. ...+.+.|.++||.+.|+ +++++|++++ .
T Consensus 358 ~~L~~l~-~~~~~-----------~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~~-----~~~~iRi~~~~~~ 420 (439)
T 2oat_A 358 NELMKLP-SDVVT-----------AVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPT-----HGDIIRFAPPLVI 420 (439)
T ss_dssp HHHTTSC-TTTEE-----------EEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECCBS-----SSSEEEECCCTTC
T ss_pred HHHHHhc-CCCcE-----------EEEeeeeEEEEEEecCccHHHHHHHHHHHHCCeEEecC-----CCCEEEEECccCC
Confidence 9898763 22110 0012334788888643 567888888899999984 3689999765 4
Q ss_pred ChhHHHHHHHHHHhhh
Q 012785 440 RDENYNLFVQRLSKIL 455 (456)
Q Consensus 440 ~~e~i~~~l~~L~~~l 455 (456)
+++++++++++|++++
T Consensus 421 t~e~i~~~l~~l~~~l 436 (439)
T 2oat_A 421 KEDELRESIEIINKTI 436 (439)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8999999999999876
No 160
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.93 E-value=3e-24 Score=215.18 Aligned_cols=275 Identities=11% Similarity=0.103 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEE-ccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC-hhhhhhhc--CCeEeee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVV-GTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS-YPSITDCV--KSRLYKW 218 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~-t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~-~~~~~~~~--g~~~~~~ 218 (456)
.++++.++++++. . ++++|++ |+|+++++++++++++++| .+.+..+.|.. ....+... |.+++.+
T Consensus 81 ~~~~~~la~~~g~---~--~~~~i~~~t~g~t~al~~~~~~l~~~g-----v~~v~~~~~~~~~~~~~~~~~~g~~~~~v 150 (398)
T 2fyf_A 81 GRVRSGLAELFSL---P--DGYEVILGNGGATAFWDAAAFGLIDKR-----SLHLTYGEFSAKFASAVSKNPFVGEPIII 150 (398)
T ss_dssp HHHHHHHHHHTTC---C--TTCEEEEEETCHHHHHHHHHHHTCSSC-----EEEEECSHHHHHHHHHHHHCTTSCCCEEE
T ss_pred HHHHHHHHHHhCC---C--CCceEEEeCCchhHHHHHHHHHhcCCC-----eEEEeCCHHHHHHHHHHHHhCCCCceEEE
Confidence 4566666666642 2 2368998 9999999999999998776 23334443321 12234445 7777666
Q ss_pred ccCcccc-----ccCCCeEEEEcCCCCCCcccch--HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCccccCCC
Q 012785 219 AGDAKRF-----NKDGPYIELVTSPNNPDGSVRQ--SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHA 291 (456)
Q Consensus 219 ~~d~~~l-----~~~~~~~i~v~~P~NPtG~~~~--~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g~~ 291 (456)
+.| ++. ...++++|++++|+||||.+++ ++++.+|+++|+|++|..... ++. ..+.+++++|+||.+|.+
T Consensus 151 ~~~-~g~~~~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~vivD~a~~~~~~-~~~-~~~~di~~~s~sK~~~~~ 227 (398)
T 2fyf_A 151 TSD-PGSAPEPQTDPSVDVIAWAHNETSTGVAVAVRRPEGSDDALVVIDATSGAGGL-PVD-IAETDAYYFAPQKNFASD 227 (398)
T ss_dssp ECC-TTCCCCCCCCTTCSEEEEESEETTTTEECCCCCCTTCC-CEEEEECTTTTTTS-CCC-GGGCSEEEECTTSTTCSC
T ss_pred ecC-CCCCCCccccCCCCEEEEeCcCCCcceecchHHhhhhcCCeEEEEeccccCCc-ccC-cccCcEEEEecCcccCCC
Confidence 655 221 1236789999999999999988 366669999999999985432 121 123579999999999977
Q ss_pred CceEEEEEEeCHHHHHHHHHHH---------------------hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHH
Q 012785 292 GTRIGWALVKDMEVAKKMTKYI---------------------ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFF 350 (456)
Q Consensus 292 G~RiG~l~~~~~~~~~~l~~~~---------------------~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l 350 (456)
| ++||++++ +++++++++.. .....+.+...+.++.++|+.+.+ ...+
T Consensus 228 g-g~g~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~---------~g~~ 296 (398)
T 2fyf_A 228 G-GLWLAIMS-PAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVG---------NGGL 296 (398)
T ss_dssp S-SEEEEEEC-HHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHH---------HTSH
T ss_pred C-ceEEEEEC-HHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHH---------ccCH
Confidence 5 69999996 88888775431 112234566677777777763211 1127
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccC--C--CCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCC
Q 012785 351 EFTNHQMSTRWKQLRMAVQKSGLFSVPE--L--PSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGK 424 (456)
Q Consensus 351 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~--~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~ 424 (456)
++.+++++++++.+.+.|++++++.+.. + .++ .++|++++. +.+.+.+.|.++||.+++|.
T Consensus 297 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~ 363 (398)
T 2fyf_A 297 DWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQ-------------VVGTIDFVDDVDAGTVAKILRANGIVDTEPY 363 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCS-------------SEEEEEECTTSCHHHHHHHHHHTTCBCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCC-------------cEEEEECCCCCCHHHHHHHHHHCCcEEecCc
Confidence 7889999999999999999875555542 2 122 278888853 56678888888899999873
Q ss_pred CCCCCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 425 HFGFSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 425 ~fg~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
.+ .+++++||++.. +++++++++++|++++
T Consensus 364 ~~-~~~~~iRis~~~~~t~e~i~~~~~~l~~~l 395 (398)
T 2fyf_A 364 RK-LGRNQLRVAMFPAVEPDDVSALTECVDWVV 395 (398)
T ss_dssp TT-TCSSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred cc-CCCCEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 22 236899999974 8999999999999875
No 161
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.93 E-value=3.4e-25 Score=226.20 Aligned_cols=267 Identities=9% Similarity=0.054 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC-------CCCCCCcEEEEeCCCCCChhhhhhhcC---
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS-------QDASEPISVVSAAPYYSSYPSITDCVK--- 212 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~-------~gd~~~~~Vlv~~P~y~~~~~~~~~~g--- 212 (456)
.+|++.++++++. ..++|++|+|++++++.+++++.. +|+. +|++.+|+|+++...+...+
T Consensus 121 ~~L~e~la~~~~~------~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~---~ii~~~~~yhg~~~~~~~~~~~~ 191 (457)
T 3tfu_A 121 ARLAKLLVDITPA------GLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKR---RLMTWRGGYHGDTFLAMSICDPH 191 (457)
T ss_dssp HHHHHHHHHHSST------TEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCC---EEEEETTCCCCSSHHHHTTSCCC
T ss_pred HHHHHHHHHhCCC------CcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCc---eEEEEcCCcCCccHHhhcccCCc
Confidence 5666666665531 246899999999999999998864 4442 89999999999876665552
Q ss_pred -------------CeEeeec------cCcccccc------CCCeEEEEcC-CCCCCcccch---------HHhhhcCcEE
Q 012785 213 -------------SRLYKWA------GDAKRFNK------DGPYIELVTS-PNNPDGSVRQ---------SVVNRSGGIL 257 (456)
Q Consensus 213 -------------~~~~~~~------~d~~~l~~------~~~~~i~v~~-P~NPtG~~~~---------~l~~~~~~~i 257 (456)
...++++ .|.+.++. .++++++++. +|||+|.+++ ++|+++|+++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gill 271 (457)
T 3tfu_A 192 GGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLL 271 (457)
T ss_dssp ----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEE
T ss_pred ccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 1222221 13344432 3567788877 7999998864 3899999999
Q ss_pred EeeecCCCCCCCCCCCC-----CCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHH-----HhhccCcCChHHHH
Q 012785 258 VHDLAYYWPQYTSITYP-----ADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKY-----IELNTIGVSKDSQL 326 (456)
Q Consensus 258 I~De~y~~~~~~~~~~~-----~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~-----~~~~~~~~s~~~q~ 326 (456)
|+||+|.+..+.+.... ...++ .||||.++ .| +|+||++++ +++++.+... ....+++.+++++.
T Consensus 272 I~DEv~~g~gr~G~~~a~~~~~~~pdi--it~sK~l~-gG~~~lG~v~~~-~~i~~~~~~~~~~~~~~~~t~~~n~~a~a 347 (457)
T 3tfu_A 272 IFDEIATGFGRTGALFAADHAGVSPDI--MCVGKALT-GGYLSLAATLCT-ADVAHTISAGAAGALMHGPTFMANPLACA 347 (457)
T ss_dssp EEECTTTTTTTTSSSSTHHHHTCCCSE--EEECGGGG-TTSSCCEEEEEE-HHHHHHHHHSSSCSCCCCCTTTTCHHHHH
T ss_pred EEEcCccCCccccchhHhHhcCCCceE--EEEChhhh-CCCcceEEEEEc-HHHHHHhhccCCCceeEecCCCcCHHHHH
Confidence 99999997544432111 11223 39999987 56 799999997 9999988632 33467899999999
Q ss_pred HHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcC---CccccCCCCcccccccccCCCCCceEEeecC
Q 012785 327 RAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSG---LFSVPELPSQFCTFLGRAFEPQPAFAWLKCE 403 (456)
Q Consensus 327 ~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~ 403 (456)
++.+.|+.+.+. ...++++++++.+.+.|+++. .+...+ +.++|+++.++
T Consensus 348 aa~aaL~~~~~~-------------~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr--------------~~G~~~~i~l~ 400 (457)
T 3tfu_A 348 VSVASVELLLGQ-------------DWRTRITELAAGLTAGLDTARALPAVTDVR--------------VCGAIGVIECD 400 (457)
T ss_dssp HHHHHHHHHHTS-------------CHHHHHHHHHHHHHHHHGGGGGSTTEEEEE--------------ECSSCEEEEES
T ss_pred HHHHHHHHHhhh-------------HHHHHHHHHHHHHHHHHHHHhcCCCeeeee--------------cCCeEEEEEEC
Confidence 999999865432 245556666677777776642 222222 23447888885
Q ss_pred c--cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEe--cCChhHHHHHHHHHHhhh
Q 012785 404 Q--EIEDCESFLKGNKILTRSGKHFGFSPKYVRISM--LDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 404 ~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~--~~~~e~i~~~l~~L~~~l 455 (456)
. +...+.+.|.++||.++|. .+++||+. ..++|++++++++|++++
T Consensus 401 ~~~~~~~~~~~l~~~Gv~v~~~------~~~lRi~p~~~~t~eei~~~l~~L~~~l 450 (457)
T 3tfu_A 401 RPVDLAVATPAALDRGVWLRPF------RNLVYAMPPYICTPAEITQITSAMVEVA 450 (457)
T ss_dssp SCCCHHHHHHHHHHTTEECCCB------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHCCeEEEec------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4 3577888888999999983 36899984 349999999999999876
No 162
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.93 E-value=3.8e-24 Score=215.63 Aligned_cols=283 Identities=16% Similarity=0.127 Sum_probs=198.1
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh----hhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI----TDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~----~~~~g~~~~~ 217 (456)
..++++.++++++. +++++|+|++++++.++.++.++|| +|+++.|+|+..... ++..|.+++.
T Consensus 58 ~~~l~~~la~~~g~--------~~~~~~~~gt~a~~~al~~l~~~gd----~vi~~~~~~~~~~~~~~~~~~~~g~~~~~ 125 (412)
T 2cb1_A 58 AKALEERLKALEGA--------LEAVVLASGQAATFAALLALLRPGD----EVVAAKGLFGQTIGLFGQVLSLMGVTVRY 125 (412)
T ss_dssp HHHHHHHHHHHHTC--------SEEEEESSHHHHHHHHHHTTCCTTC----EEEEETTCCHHHHHHHHHTTTTTTCEEEE
T ss_pred HHHHHHHHHHHhCC--------CcEEEECCHHHHHHHHHHHHhCCCC----EEEEeCCCchhHHHHHHHHHHHcCCEEEE
Confidence 37888888888852 4899999999999999999999999 999999999875554 4557999998
Q ss_pred eccCcccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCccccC
Q 012785 218 WAGDAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTG 289 (456)
Q Consensus 218 ~~~d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g 289 (456)
++.|.+.++. .++++|++++|+||||.+.+ ++|+++|+++|+|++|....+...+...+.+++++|+||.++
T Consensus 126 ~~~~~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K~~~ 205 (412)
T 2cb1_A 126 VDPEPEAVREALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWAS 205 (412)
T ss_dssp ECSSHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEEETTTTTT
T ss_pred ECCCHHHHHHHhccCCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccccCCccccCCeEEEECCccccc
Confidence 8888766653 36789999999999999987 489999999999999986522222223467999999999998
Q ss_pred CCCceEEEEEEeCH---------------------------HHHHHHHHHH-hhccCcCChHHHHHHHHHHHhhhCCCCC
Q 012785 290 HAGTRIGWALVKDM---------------------------EVAKKMTKYI-ELNTIGVSKDSQLRAAKVLKVVSDSCKP 341 (456)
Q Consensus 290 ~~G~RiG~l~~~~~---------------------------~~~~~l~~~~-~~~~~~~s~~~q~~a~~~L~~~~~~~~~ 341 (456)
.||.|+||+++.++ ++.+.++... .......++.....+...++
T Consensus 206 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~-------- 277 (412)
T 2cb1_A 206 GHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLE-------- 277 (412)
T ss_dssp CSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGG--------
T ss_pred CCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCc--------
Confidence 89999999988642 4455555543 21222345555444444333
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccc----ccccccCCCCCceEEeecCccHHHHHHHHHhCC
Q 012785 342 SGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFC----TFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNK 417 (456)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~----~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~g 417 (456)
.+....++..++.+.+.+.|.+.+.+.....+|... ...++.+...+.++.+.+ ++.+.+.+.+.+.|
T Consensus 278 -------~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~~~~~~~~~l~~~~ 349 (412)
T 2cb1_A 278 -------TVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-GDLERASRFLGAIR 349 (412)
T ss_dssp -------GHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-SSHHHHHHHHHHCS
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-CCHHHHHHHHHhCC
Confidence 233444556677888889998876655331111000 000000012334667777 46778888999999
Q ss_pred EEeecCC---------CC----------------CCCCCeEEEEecC--ChhHHHHHHHHHHh
Q 012785 418 ILTRSGK---------HF----------------GFSPKYVRISMLD--RDENYNLFVQRLSK 453 (456)
Q Consensus 418 I~v~pg~---------~f----------------g~~~~~iRis~~~--~~e~i~~~l~~L~~ 453 (456)
|.+ .++ .+ |..++.||+|++. ++++++.+++.|++
T Consensus 350 i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 350 LLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp SEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred eee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 999 774 22 1126899999975 56788888887765
No 163
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.93 E-value=5.2e-25 Score=220.54 Aligned_cols=285 Identities=12% Similarity=0.079 Sum_probs=191.8
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh----hhhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS----ITDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~----~~~~~g~~~~~ 217 (456)
..+||+++|++++. ++.|++++| +++++++++ ++++|| +|+++.|+|++... .++..|.+++.
T Consensus 57 ~~~lr~~la~~~g~-------~~~i~~~sG-t~a~~~al~-~~~~gd----~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~ 123 (393)
T 1n8p_A 57 RENLERAVAALENA-------QYGLAFSSG-SATTATILQ-SLPQGS----HAVSIGDVYGGTHRYFTKVANAHGVETSF 123 (393)
T ss_dssp HHHHHHHHHHHTTC-------SEEEEESCH-HHHHHHHHH-TSCSSC----EEEEESSCCHHHHHHHHHTSTTTCSCCEE
T ss_pred HHHHHHHHHHHhCC-------CcEEEECCh-HHHHHHHHH-HcCCCC----EEEEeCCCchHHHHHHHHHHHHcCcEEEE
Confidence 37899999999863 245555555 899999999 889999 99999999985443 45667888887
Q ss_pred eccCcccccc---CCCeEEEEcCCCCCCcccch-----HHhhhc----CcEEEeeecCCCCCCCCCCCCCCCcEEEecCc
Q 012785 218 WAGDAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRS----GGILVHDLAYYWPQYTSITYPADHDLMLFTVS 285 (456)
Q Consensus 218 ~~~d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~----~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~S 285 (456)
++.+.+.++. .++++|++++||||||.+++ ++|+++ |+++|+|++|....+... ...+.+++++|+|
T Consensus 124 v~~~d~~l~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~~~-~~~~~di~~~S~s 202 (393)
T 1n8p_A 124 TNDLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNP-LNFGADIVVHSAT 202 (393)
T ss_dssp ESSHHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCG-GGGTCSEEEEETT
T ss_pred eCCChHHHHHhcccCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccCCH-HHcCCeEEEEECc
Confidence 7763144432 36789999999999999987 488999 999999999985322111 1235789999999
Q ss_pred cccCCCCceE-EEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 012785 286 KSTGHAGTRI-GWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQL 364 (456)
Q Consensus 286 K~~g~~G~Ri-G~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 364 (456)
|.+|.+|+|+ ||++++++++++.+...........++..+.++...++ .+....+...++.+.+
T Consensus 203 K~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~---------------~~~~~~~~~~~~~~~l 267 (393)
T 1n8p_A 203 KYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLK---------------TLHLRVRQAALSANKI 267 (393)
T ss_dssp TTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT---------------THHHHHHHHHHHHHHH
T ss_pred ccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccc---------------hHHHHHHHHHHHHHHH
Confidence 9999999999 99998548898988877654455567766666555554 2334455566777778
Q ss_pred HHHHHhcCC-cccc-CCC-Cccc--ccccccCCC-C-CceEEeecCcc---HHHHHHHHHhCCEEeecCCC---------
Q 012785 365 RMAVQKSGL-FSVP-ELP-SQFC--TFLGRAFEP-Q-PAFAWLKCEQE---IEDCESFLKGNKILTRSGKH--------- 425 (456)
Q Consensus 365 ~~~L~~~~~-~~~~-~~~-g~~~--~~~~~~~~~-~-~~f~~~~~~~~---~~~~~~~l~~~gI~v~pg~~--------- 425 (456)
.+.|++.+. +... .|. .+.. ....+.... . ++.+++.+++. .+.+...+...++.+..|+.
T Consensus 268 ~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~~~~~~~s~G~~~s~~~~p~~ 347 (393)
T 1n8p_A 268 AEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAV 347 (393)
T ss_dssp HHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCCSSCEEECTTT
T ss_pred HHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCCcceECCCCCCCcceeecccc
Confidence 888877643 2211 110 0000 000000011 2 45788888643 23344444445555554421
Q ss_pred -C------------CCCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 426 -F------------GFSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 426 -f------------g~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+ |..++.||+|++. ++++++.+.+.|+++.
T Consensus 348 ~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~~ 392 (393)
T 1n8p_A 348 MTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQAT 392 (393)
T ss_dssp TTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 1 2235799999986 5677888888887653
No 164
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.93 E-value=4.9e-25 Score=224.56 Aligned_cols=275 Identities=9% Similarity=-0.019 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC----CC----CCCCcEEEEeCCCCCChhhhhhhcCCe
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS----QD----ASEPISVVSAAPYYSSYPSITDCVKSR 214 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~----~g----d~~~~~Vlv~~P~y~~~~~~~~~~g~~ 214 (456)
.+.++++++++...- +. ..++|++|+|++++++.+++++.. +| + +|++.+|+|+++...+...+..
T Consensus 86 ~~~~~~la~~l~~~~-~~-~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~----~vi~~~~~yhg~~~~~~~~~~~ 159 (448)
T 3dod_A 86 NVPATQLAETLIDIS-PK-KLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQ----KFIAMKNGYHGDTIGAVSVGSI 159 (448)
T ss_dssp EHHHHHHHHHHHHHS-CT-TEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCC----EEEEEC----------------
T ss_pred CHHHHHHHHHHHHhC-CC-CCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCC----EEEEECCCCCCccHHHHHhcCC
Confidence 566777777764321 11 236999999999999999998865 44 6 9999999999887655544321
Q ss_pred ---------------Eeeecc---------------Ccccccc------CCCeEEEEcCCC-CCCcccch---------H
Q 012785 215 ---------------LYKWAG---------------DAKRFNK------DGPYIELVTSPN-NPDGSVRQ---------S 248 (456)
Q Consensus 215 ---------------~~~~~~---------------d~~~l~~------~~~~~i~v~~P~-NPtG~~~~---------~ 248 (456)
.++++. |.+.++. .++++|+++.++ ||+|...+ +
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~ 239 (448)
T 3dod_A 160 ELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRE 239 (448)
T ss_dssp -------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHH
T ss_pred ccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHH
Confidence 111111 1333432 245666665556 88886643 3
Q ss_pred HhhhcCcEEEeeecCCCCCCCCCC---CCCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHH-------HHhhcc
Q 012785 249 VVNRSGGILVHDLAYYWPQYTSIT---YPADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTK-------YIELNT 317 (456)
Q Consensus 249 l~~~~~~~iI~De~y~~~~~~~~~---~~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~-------~~~~~~ 317 (456)
+|+++|+++|+||+|.+..+.+.. ...+...-+.||||.++ +| +|+||++++ +++++.+.+ .....+
T Consensus 240 l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~sK~l~-~G~~~ig~v~~~-~~~~~~~~~~~~~~~~~~~~~t 317 (448)
T 3dod_A 240 LCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGIT-GGYLPIAVTFAT-EDIYKAFYDDYENLKTFFHGHS 317 (448)
T ss_dssp HHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGG-TTSSCCEEEEEE-HHHHHTTCSCGGGCCCCCCCCT
T ss_pred HHHHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEEeccccc-CCcCceEEEEEC-HHHHHHhhhccccCCcccccCC
Confidence 899999999999999965433211 11122222557999998 69 599999997 999988876 444568
Q ss_pred CcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCce
Q 012785 318 IGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAF 397 (456)
Q Consensus 318 ~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f 397 (456)
++.++++|.++.+.|+.+.+ ++++++.++..+..++.+.+ +..++.+...++.| .|
T Consensus 318 ~~~~~~~~aaa~aal~~~~~---------~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~g--------------~~ 373 (448)
T 3dod_A 318 YTGNQLGCAVALENLALFES---------ENIVEQVAEKSKKLHFLLQD-LHALPHVGDIRQLG--------------FM 373 (448)
T ss_dssp TTTCHHHHHHHHHHHHHHHH---------TTHHHHHHHHHHHHHHHHHH-HTTSTTEEEEEEET--------------TE
T ss_pred CCcCHHHHHHHHHHHHHHhc---------ccHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEeee--------------EE
Confidence 89999999999999985432 23455555555555555555 54444333332233 36
Q ss_pred EEeecCcc-------------HHHHHHHHHhCCEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 398 AWLKCEQE-------------IEDCESFLKGNKILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 398 ~~~~~~~~-------------~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
+|+.++.+ ...+.+.+.++||.++|+ .+++||+ +..+++++++++++|++++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~------~~~iRi~~~~~~t~e~i~~~l~~l~~~l 440 (448)
T 3dod_A 374 CGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPL------GDVIAFLPPLASTAEELSEMVAIMKQAI 440 (448)
T ss_dssp EEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEE------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEecc------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 78877532 256778888899999985 3799995 4459999999999999876
No 165
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.93 E-value=8.1e-26 Score=229.01 Aligned_cols=308 Identities=12% Similarity=0.005 Sum_probs=201.9
Q ss_pred CCCCeEEecCCCC--CCC-chhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 92 GGERIINVDHGDP--TMY-EKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~p--~~~-~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
.++..+|+..|.. .+. .++.+.++.. ..+..... .+|++.. ..+|++++++++. ..++|++
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~-~~~~~~~~--~~~~~~~------~~~l~~~la~~~~-------~~~~v~~ 114 (429)
T 3k28_A 51 DGNEYIDYVLSWGPLIHGHANDRVVEALK-AVAERGTS--FGAPTEI------ENKLAKLVIERVP-------SIEIVRM 114 (429)
T ss_dssp TCCEEEESCGGGTTCTTCBSCHHHHHHHH-HHHHHCSC--CSSCCHH------HHHHHHHHHHHST-------TCSEEEE
T ss_pred CCCEEEECCCChhhcccCCCCHHHHHHHH-HHHhhCcC--cCCCCHH------HHHHHHHHHHhCC-------CCCEEEE
Confidence 5677899987753 222 2444443322 11222211 2344332 3688888888763 2469999
Q ss_pred ccCHHHHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhhcCC--------------------eEeeecc-Ccccc
Q 012785 169 GTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCVKS--------------------RLYKWAG-DAKRF 225 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~~g~--------------------~~~~~~~-d~~~l 225 (456)
|+|++++++.+++.+.. +++ +|++.+|+|+++...+...+. .++.++. |.+.+
T Consensus 115 ~~~Gsea~~~ai~~a~~~~~~~----~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 190 (429)
T 3k28_A 115 VNSGTEATMSALRLARGYTGRN----KILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESV 190 (429)
T ss_dssp ESSHHHHHHHHHHHHHHHHTCC----EEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHH
T ss_pred eCChHHHHHHHHHHHHHhhCCC----EEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHH
Confidence 99999999999988764 556 899999999987655443221 1122222 45554
Q ss_pred cc------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC---CCCCCcEEEecCccc
Q 012785 226 NK------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT---YPADHDLMLFTVSKS 287 (456)
Q Consensus 226 ~~------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~---~~~~~~i~i~S~SK~ 287 (456)
+. .++++++++.++|++|.+.+ ++|+++|+++|+||+|.+. ..+.. ...+...-+.||||.
T Consensus 191 e~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~ 269 (429)
T 3k28_A 191 KYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGVTPDLTCLGKV 269 (429)
T ss_dssp HHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGG
T ss_pred HHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchHHHHhCCCCceehhhhh
Confidence 32 24455655444556666643 3899999999999999865 33221 111222235689999
Q ss_pred cCCCCceEEEEEEeCHHHHHHHHHHH---hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 012785 288 TGHAGTRIGWALVKDMEVAKKMTKYI---ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQL 364 (456)
Q Consensus 288 ~g~~G~RiG~l~~~~~~~~~~l~~~~---~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 364 (456)
++ +|+|+||++++ +++++.+.... ...+++.++++|.++.+.|+. . + ++.++.++++++.+
T Consensus 270 ~~-~G~~iG~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~---~--------~---~~~~~~~~~~~~~l 333 (429)
T 3k28_A 270 IG-GGLPVGAYGGK-AEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQ---L--------T---PESYVEFERKAEML 333 (429)
T ss_dssp GG-TTSCCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHT---C--------C---HHHHHHHHHHHHHH
T ss_pred hc-CCCCeEEEEEc-HHHHhhhccCCCccccCCCCCChHHHHHHHHHHHH---H--------H---HHHHHHHHHHHHHH
Confidence 98 69999999996 88888775532 335788999999999999982 2 1 45666677777777
Q ss_pred HHHHHhc----CCccccCCCCcccccccccCCCCCceEEeecCc---------------cHHHHHHHHHhCCEEeecCCC
Q 012785 365 RMAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---------------EIEDCESFLKGNKILTRSGKH 425 (456)
Q Consensus 365 ~~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---------------~~~~~~~~l~~~gI~v~pg~~ 425 (456)
.+.|++. +.....++.| +|+++.+.. ....+.+.|.++||.++|+.
T Consensus 334 ~~~L~~~~~~~~~~~~~~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~- 398 (429)
T 3k28_A 334 EAGLRKAAEKHGIPHHINRAG--------------SMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQ- 398 (429)
T ss_dssp HHHHHHHHHHTTCCCEEEEET--------------TEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSST-
T ss_pred HHHHHHHHhhCCCCEEEEeec--------------cEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecCC-
Confidence 7777653 3322223333 356665521 12567778889999999963
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 426 FGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 426 fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
.+++|+++..+++++++++++|++++
T Consensus 399 ----~~~~r~~~~~t~e~i~~~l~~l~~~l 424 (429)
T 3k28_A 399 ----FEGLFLSTVHSDADIEATIAAAEIAM 424 (429)
T ss_dssp ----TSCBCCCTTCCHHHHHHHHHHHHHHH
T ss_pred ----CCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 45789988779999999999999876
No 166
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.93 E-value=5.3e-24 Score=212.69 Aligned_cols=274 Identities=14% Similarity=0.105 Sum_probs=196.8
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 220 (456)
..+|+++++++++. +++++|+|+++++.+++.++ .++|| +|++++|+|+.+...++..|++++.++.
T Consensus 41 ~~~l~~~la~~~~~--------~~~~~~~~gt~al~~~~~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~v~~ 108 (393)
T 1mdo_A 41 NQELEAAFCRLTGN--------QYAVAVSSATAGMHIALMALGIGEGD----EVITPSMTWVSTLNMIVLLGANPVMVDV 108 (393)
T ss_dssp HHHHHHHHHHHHCC--------SEEEEESCHHHHHHHHHHHTTCCTTC----EEEEESSSCHHHHHHHHHTTCEEEEECB
T ss_pred HHHHHHHHHHHhCC--------CcEEEecChHHHHHHHHHHcCCCCCC----EEEeCCCccHhHHHHHHHCCCEEEEEec
Confidence 48999999999963 48999999999999999999 89999 9999999999999999999999987775
Q ss_pred Cc-------ccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC-CCCCCCCCCC-CcEEEec
Q 012785 221 DA-------KRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP-QYTSITYPAD-HDLMLFT 283 (456)
Q Consensus 221 d~-------~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~-~~~~~~~~~~-~~i~i~S 283 (456)
|. +.++. .++++|+++ ||||...+ ++|+++|+++|+|++|... .+.... .+ .+++++|
T Consensus 109 ~~~~~~~d~~~l~~~l~~~~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~--~~~~d~~~~S 183 (393)
T 1mdo_A 109 DRDTLMVTPEHIEAAITPQTKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRH--IGARGTAIFS 183 (393)
T ss_dssp CTTTCCBCHHHHHHHCCTTEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEE--TTSSSEEEEE
T ss_pred cCCcCCCCHHHHHHhcCCCceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECccccCCeECCee--cCCCCeEEEe
Confidence 53 33322 256777765 48998866 3889999999999999852 121111 12 7899999
Q ss_pred CccccCCCCceEEEEEEeCHHHHHHHHHHHhhcc------------------------CcCChHHHHHHHHHHHhhhCCC
Q 012785 284 VSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNT------------------------IGVSKDSQLRAAKVLKVVSDSC 339 (456)
Q Consensus 284 ~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~------------------------~~~s~~~q~~a~~~L~~~~~~~ 339 (456)
|||+.+++|.|+||++++++++++++........ ...+.+.+.++...++
T Consensus 184 ~~k~K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~------ 257 (393)
T 1mdo_A 184 FHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQ------ 257 (393)
T ss_dssp CCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHH------
T ss_pred CCCCCccccccceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHH------
Confidence 9944444556999999966889888877543111 1234444444444333
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCC-cccccccccCCCCCceEEeecCc-----cHHHHHHHH
Q 012785 340 KPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPS-QFCTFLGRAFEPQPAFAWLKCEQ-----EIEDCESFL 413 (456)
Q Consensus 340 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g-~~~~~~~~~~~~~~~f~~~~~~~-----~~~~~~~~l 413 (456)
.+++..++.++.++.+.+.|++.+ +.+..+.. .. ...+.++|+.++. +.+.+.+.|
T Consensus 258 ---------~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~~l~~~l 319 (393)
T 1mdo_A 258 ---------KLDALNARRAAIAAQYHQAMADLP-FQPLSLPSWEH--------IHAWHLFIIRVDEARCGITRDALMASL 319 (393)
T ss_dssp ---------THHHHHHHHHHHHHHHHHHHHTSS-CEECCCCSSCE--------ECCCSCEEEECCHHHHSSCHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHhcCC-cccccCCCCCC--------CceeEEEEEEecccccccCHHHHHHHH
Confidence 234455556667788888898876 54432110 00 0112268888862 567788889
Q ss_pred HhCCEEeecCCCCC-------------C-------CCCeEEEEecC--ChhHHHHHHHHHHhhhC
Q 012785 414 KGNKILTRSGKHFG-------------F-------SPKYVRISMLD--RDENYNLFVQRLSKILS 456 (456)
Q Consensus 414 ~~~gI~v~pg~~fg-------------~-------~~~~iRis~~~--~~e~i~~~l~~L~~~l~ 456 (456)
.++||.+++|..+. . ..+.+|+++.. ++++++.++++|+++++
T Consensus 320 ~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~ 384 (393)
T 1mdo_A 320 KTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAG 384 (393)
T ss_dssp HHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999986440 1 13589999873 89999999999998764
No 167
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.92 E-value=5e-25 Score=223.19 Aligned_cols=314 Identities=11% Similarity=0.017 Sum_probs=191.6
Q ss_pred CCCCeEEecCCCCC--C-CchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 92 GGERIINVDHGDPT--M-YEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~p~--~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
.++..+|+..+... + ..++.+.++.. ..+..... ..|+... ..+|++.+++++. ..++|++
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~-~~~~~~~~--~~~~~~~------~~~la~~l~~~~~-------~~~~v~~ 114 (429)
T 4e77_A 51 DGKAYIDYVGSWGPMILGHNHPAIRQAVI-EAVERGLS--FGAPTEM------EVKMAQLVTDLVP-------TMDMVRM 114 (429)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHH-HHHTTCSC--CSSCCHH------HHHHHHHHHHHST-------TCSEEEE
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHH-HHHHhCcc--cCCCCHH------HHHHHHHHHhhCC-------CCCEEEE
Confidence 56778898877532 2 12344443221 11222211 1233222 2456666666543 2479999
Q ss_pred ccCHHHHHHHHHHHhc--CCCCCCCcEEEEeCCCCCChhhhhhhc--------------C------CeEeeecc-Ccccc
Q 012785 169 GTGSTQLFQAALYALS--SQDASEPISVVSAAPYYSSYPSITDCV--------------K------SRLYKWAG-DAKRF 225 (456)
Q Consensus 169 t~G~~~al~~~~~~l~--~~gd~~~~~Vlv~~P~y~~~~~~~~~~--------------g------~~~~~~~~-d~~~l 225 (456)
|+|++++++.+++.+. .+++ +|++.+++|+++...+... | ..+..++. |.+.+
T Consensus 115 ~~sGsea~~~al~~a~~~~~~~----~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 190 (429)
T 4e77_A 115 VNSGTEATMSAIRLARGYTGRD----KIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASV 190 (429)
T ss_dssp ESSHHHHHHHHHHHHHHHHCCC----EEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTCHHHH
T ss_pred eCcHHHHHHHHHHHHHHhhCCC----EEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHH
Confidence 9999999999998653 2445 8999999999877522110 1 11222322 45544
Q ss_pred cc----C-CCeEEEEcCCCCCCccc-ch---------HHhhhcCcEEEeeecCCCCCCCCCCC---CCCCcEEEecCccc
Q 012785 226 NK----D-GPYIELVTSPNNPDGSV-RQ---------SVVNRSGGILVHDLAYYWPQYTSITY---PADHDLMLFTVSKS 287 (456)
Q Consensus 226 ~~----~-~~~~i~v~~P~NPtG~~-~~---------~l~~~~~~~iI~De~y~~~~~~~~~~---~~~~~i~i~S~SK~ 287 (456)
+. . ...++++++|+||+|.+ .+ ++|+++|+++|+||+|.+. ..+... ..+...-+.||||.
T Consensus 191 e~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~~pdi~t~sK~ 269 (429)
T 4e77_A 191 RQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYHVIPDLTCLGKI 269 (429)
T ss_dssp HHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTCCCSEEEEEGG
T ss_pred HHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcchHHHhcCCCCCeeeeccc
Confidence 32 1 22345556787766544 33 2799999999999999964 322110 11111124599999
Q ss_pred cCCCCceEEEEEEeCHHHHHHHHHH---HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 012785 288 TGHAGTRIGWALVKDMEVAKKMTKY---IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQL 364 (456)
Q Consensus 288 ~g~~G~RiG~l~~~~~~~~~~l~~~---~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 364 (456)
++ +|+|+||++++ +++++.+... ....+++.+++++.++.+.|+.+.+ ++++++.++..+..++.+
T Consensus 270 ~~-~G~~~G~~~~~-~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---------~~~~~~~~~~~~~l~~~L 338 (429)
T 4e77_A 270 IG-GGMPVGAFGGR-REVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ---------VGVYETLTELTDSLATGL 338 (429)
T ss_dssp GG-TTSCCEEEEEC-HHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS---------TTHHHHHHHHHHHHHHHH
T ss_pred cc-CCCCeEEEEEC-HHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHHHHH
Confidence 99 89999999996 9988877653 2345778999999999999986533 234444444444444455
Q ss_pred HHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCcc----------------HHHHHHHHHhCCEEeecCCCCCC
Q 012785 365 RMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQE----------------IEDCESFLKGNKILTRSGKHFGF 428 (456)
Q Consensus 365 ~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~----------------~~~~~~~l~~~gI~v~pg~~fg~ 428 (456)
.+.+...+.....++. ++|+|+.++.. ...+.+.|.++||.++|+.
T Consensus 339 ~~~~~~~~~~~~~~~~--------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~---- 400 (429)
T 4e77_A 339 RHAAKEENIPLVVNHV--------------GGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSA---- 400 (429)
T ss_dssp HHHHHHTTCCCEEEEE--------------TTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSST----
T ss_pred HHHHHhCCCceEEEEe--------------eeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecC----
Confidence 5544444432222222 23688877532 1567778888999999964
Q ss_pred CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 429 SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 429 ~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
...+|+++..++|++++++++|+++++
T Consensus 401 -~~~~~~~~~~t~e~i~~~l~~l~~~l~ 427 (429)
T 4e77_A 401 -FEAGFMSLAHSNEDIQKTVNAARRCFA 427 (429)
T ss_dssp -TSCEECCTTCCHHHHHHHHHHHHHHHT
T ss_pred -CCCEEEeccCCHHHHHHHHHHHHHHHH
Confidence 345788876799999999999998864
No 168
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.92 E-value=2e-24 Score=218.55 Aligned_cols=313 Identities=11% Similarity=0.005 Sum_probs=195.5
Q ss_pred CCCCeEEecCCCCC---CCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 92 GGERIINVDHGDPT---MYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~p~---~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
.++..+|+..|.+. ...++.+.++.. ..+.... .|..+ .++++++++++..... ..++|++
T Consensus 50 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~-~~~~~~~----~~~~~--------~~~~~~la~~l~~~~~---~~~~v~~ 113 (427)
T 3fq8_A 50 DGNRYIDYVGTWGPAICGHAHPEVIEALK-VAMEKGT----SFGAP--------CALENVLAEMVNDAVP---SIEMVRF 113 (427)
T ss_dssp TSCEEEESSGGGTTCTTCBTCHHHHHHHH-HHHTTCS----CCSSC--------CHHHHHHHHHHHHHST---TCSEEEE
T ss_pred CCCEEEECCCchhhhccCCCCHHHHHHHH-HHHHhCC----CcCCC--------CHHHHHHHHHHHHhCC---CCCEEEE
Confidence 46778999887532 222444443322 1122221 22221 3455555555533211 2579999
Q ss_pred ccCHHHHHHHHHHHhc--CCCCCCCcEEEEeCCCCCChhhhhhhcCC-e-------------------Eeeecc-Ccccc
Q 012785 169 GTGSTQLFQAALYALS--SQDASEPISVVSAAPYYSSYPSITDCVKS-R-------------------LYKWAG-DAKRF 225 (456)
Q Consensus 169 t~G~~~al~~~~~~l~--~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~-~-------------------~~~~~~-d~~~l 225 (456)
|+|++++++.+++... ..++ +|++.+|+|+++...+...+. . ++.++. |.+.+
T Consensus 114 ~~ggsea~~~al~~a~~~~~~~----~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 189 (427)
T 3fq8_A 114 VNSGTEACMAVLRIMRAYTGRD----KIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAV 189 (427)
T ss_dssp ESSHHHHHHHHHHHHHHHHCCC----EEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHHHH
T ss_pred eCCHHHHHHHHHHHHHHhhCCC----EEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCCCHHHH
Confidence 9999999999995442 2345 899999999987654443321 1 122222 55555
Q ss_pred cc------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC---CCCCCcEEEecCccc
Q 012785 226 NK------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT---YPADHDLMLFTVSKS 287 (456)
Q Consensus 226 ~~------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~---~~~~~~i~i~S~SK~ 287 (456)
+. .++++++++.++|++|.+.+ ++|+++|+++|+||+|.+. +.+.. ...+...-+.||||.
T Consensus 190 e~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~ 268 (427)
T 3fq8_A 190 KALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKI 268 (427)
T ss_dssp HHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHHTTCCCSEEEECGG
T ss_pred HHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchhhHhcCCCCChhhhhhh
Confidence 32 14567777666778888765 2799999999999999965 32211 111112225789999
Q ss_pred cCCCCceEEEEEEeCHHHHHHHHHH---HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 012785 288 TGHAGTRIGWALVKDMEVAKKMTKY---IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQL 364 (456)
Q Consensus 288 ~g~~G~RiG~l~~~~~~~~~~l~~~---~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 364 (456)
++ +|+|+||++++ +++++.+... ....+++.+++++.++.+.|+.+.+ +++.++.++..+..++.+
T Consensus 269 ~~-~G~~~G~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~---------~~~~~~~~~~~~~~~~~l 337 (427)
T 3fq8_A 269 IG-GGLPVGAYGGK-REIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ---------PGTYEYLDQITKRLSDGL 337 (427)
T ss_dssp GG-TTSSCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS---------TTHHHHHHHHHHHHHHHH
T ss_pred hh-CCcceEEEEEc-HHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHHHHH
Confidence 99 89999999996 9998887653 2335678899999999999985433 234444444444444444
Q ss_pred HHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCcc---------------HHHHHHHHHhCCEEeecCCCCCCC
Q 012785 365 RMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQE---------------IEDCESFLKGNKILTRSGKHFGFS 429 (456)
Q Consensus 365 ~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~---------------~~~~~~~l~~~gI~v~pg~~fg~~ 429 (456)
.+.+...+.....++ .++|+|+.+... ...+.+.|.++||.++|+.
T Consensus 338 ~~~~~~~~~~~~~~~--------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~----- 398 (427)
T 3fq8_A 338 LAIAQETGHAACGGQ--------------VSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQ----- 398 (427)
T ss_dssp HHHHHHTTCCCEEEE--------------ETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSST-----
T ss_pred HHHHHhCCCCeEEEE--------------eeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCC-----
Confidence 444443332212221 223677776421 3467778889999999965
Q ss_pred CCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 430 PKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 430 ~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
...+|+++..++|++++++++|++++
T Consensus 399 ~~r~~~~~~~t~e~i~~~l~~l~~~l 424 (427)
T 3fq8_A 399 FEAGFTSLAHTEEDIDATLAAARTVM 424 (427)
T ss_dssp TSCEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCEEeeCcCCHHHHHHHHHHHHHHH
Confidence 23567777669999999999999876
No 169
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.92 E-value=1e-23 Score=210.73 Aligned_cols=311 Identities=12% Similarity=0.031 Sum_probs=206.1
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCcccccccc-CCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccC
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFS-DVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTG 171 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G 171 (456)
-.++++++.+.|.+++. +.++.. ..+..+ .|+ +..+ ..+|+++++++++. +++++++|
T Consensus 21 ~~~~~~l~~~~p~~~~~--~~~a~~-~~~~~~-----~~~~~~~~-----~~~l~~~la~~~~~--------~~~i~~~~ 79 (391)
T 3dr4_A 21 MSDLPRISVAAPRLDGN--ERDYVL-ECMDTT-----WISSVGRF-----IVEFEKAFADYCGV--------KHAIACNN 79 (391)
T ss_dssp -------CCCCCCCCSS--HHHHHH-HHHHHT-----CCSSCSHH-----HHHHHHHHHHHHTC--------SEEEEESS
T ss_pred cCCCceeccCCCCCCHH--HHHHHH-HHHHcC-----CccCCChH-----HHHHHHHHHHHhCC--------CcEEEeCC
Confidence 35789999999987733 222211 112222 244 4455 48999999999963 37888888
Q ss_pred HHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC-------cccccc---CCCeEEEEcCCCC
Q 012785 172 STQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD-------AKRFNK---DGPYIELVTSPNN 240 (456)
Q Consensus 172 ~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d-------~~~l~~---~~~~~i~v~~P~N 240 (456)
+++++.+++.++ ..+|| +|+++.|+|+.+...++..|++++.++.| .+.++. .++++++ |+|
T Consensus 80 gt~al~~~l~~~~~~~gd----~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n 152 (391)
T 3dr4_A 80 GTTALHLALVAMGIGPGD----EVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIM---PVH 152 (391)
T ss_dssp HHHHHHHHHHHHTCCTTC----EEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGSGGGCCTTEEEEC---CBC
T ss_pred HHHHHHHHHHHcCCCCcC----EEEECCCchHHHHHHHHHCCCEEEEEecCccccCcCHHHHHHhcCCCceEEE---EEC
Confidence 899999999999 89999 99999999999999999999999877665 333432 2456665 678
Q ss_pred CCcccch-----HHhhhcCcEEEeeecCCCC-CCCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHh
Q 012785 241 PDGSVRQ-----SVVNRSGGILVHDLAYYWP-QYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE 314 (456)
Q Consensus 241 PtG~~~~-----~l~~~~~~~iI~De~y~~~-~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~ 314 (456)
|||...+ ++|+++|+++|+|++|... .+.+.....-.++.+.||||..+++|.+.||++++++++.+++.....
T Consensus 153 ~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~S~s~~K~l~~g~gg~~~~~~~~~~~~~~~~~~ 232 (391)
T 3dr4_A 153 LYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNAIITTGEGGMITTNDDDLAAKMRLLRG 232 (391)
T ss_dssp GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHHB
T ss_pred CCCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeecccCCEEEEECCCCCcCCcCCeEEEEECCHHHHHHHHHHHh
Confidence 9999866 4899999999999999842 122211111124888888844444556899999987788888877653
Q ss_pred hcc--------------CcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCC-
Q 012785 315 LNT--------------IGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPEL- 379 (456)
Q Consensus 315 ~~~--------------~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~- 379 (456)
... +..+.+...++...+ +.+++..++.++.++.+.+.|++. ++.+..+
T Consensus 233 ~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~---------------~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 296 (391)
T 3dr4_A 233 QGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQL---------------ERVDEHLAARERVVGWYEQKLARL-GNRVTKPH 296 (391)
T ss_dssp TTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHH---------------HTHHHHHHHHHHHHHHHHHHHGGG-TTSEECCC
T ss_pred cCCCCCCcccccccccccCCCHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHhhcC-CccccCcC
Confidence 211 233443333322222 234556677777888888888877 4544433
Q ss_pred --CCcccccccccCCCCCceEEeecCc----cHHHHHHHHHhCCEEeecCCC---CCC----------------CCCeEE
Q 012785 380 --PSQFCTFLGRAFEPQPAFAWLKCEQ----EIEDCESFLKGNKILTRSGKH---FGF----------------SPKYVR 434 (456)
Q Consensus 380 --~g~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~~~gI~v~pg~~---fg~----------------~~~~iR 434 (456)
.+.. .....+++.++. +.+.+.+.|.++||.+++|.. ... ..+.+|
T Consensus 297 ~~~~~~---------~~~~~~~i~~~~~~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lr 367 (391)
T 3dr4_A 297 VALTGR---------HVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLN 367 (391)
T ss_dssp CCTTSC---------CCCSSEEEEECSSCSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEE
T ss_pred CCCCCc---------ceeEEEEEEECCccchhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEE
Confidence 1111 011135666653 467788889999999998851 100 135799
Q ss_pred EEecC--ChhHHHHHHHHHHhhhC
Q 012785 435 ISMLD--RDENYNLFVQRLSKILS 456 (456)
Q Consensus 435 is~~~--~~e~i~~~l~~L~~~l~ 456 (456)
|++.. ++|+++.+++.|+++++
T Consensus 368 l~~~~~~t~edi~~~~~~l~~~l~ 391 (391)
T 3dr4_A 368 LPTHAGLTEADIDRVIAALDQVLV 391 (391)
T ss_dssp ECCCTTCCHHHHHHHHHHHHTTCC
T ss_pred ccCCCCCCHHHHHHHHHHHHHHhC
Confidence 99864 89999999999998874
No 170
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.92 E-value=1.7e-24 Score=220.64 Aligned_cols=254 Identities=11% Similarity=0.038 Sum_probs=175.4
Q ss_pred CceEEEccCHHHHHHHHHHHhcC--------CCCCCCcEEEEeCCCCCChhh-hhhhcC--------------CeEeeec
Q 012785 163 NHHIVVGTGSTQLFQAALYALSS--------QDASEPISVVSAAPYYSSYPS-ITDCVK--------------SRLYKWA 219 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~--------~gd~~~~~Vlv~~P~y~~~~~-~~~~~g--------------~~~~~~~ 219 (456)
.++|++|+|++++++++++++.. +++ +|++.+|+|+++.. .....| ...++++
T Consensus 110 ~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~----~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~ 185 (449)
T 3a8u_X 110 LNHVFFTDSGSECALTAVKMVRAYWRLKGQATKT----KMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHT 185 (449)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCC----EEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCC
T ss_pred CCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCC----EEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCC
Confidence 57999999999999999998764 667 99999999998764 333332 3333332
Q ss_pred c---------C--------cccccc-------CCCeEEEEcCC-CCCCcccch---------HHhhhcCcEEEeeecCCC
Q 012785 220 G---------D--------AKRFNK-------DGPYIELVTSP-NNPDGSVRQ---------SVVNRSGGILVHDLAYYW 265 (456)
Q Consensus 220 ~---------d--------~~~l~~-------~~~~~i~v~~P-~NPtG~~~~---------~l~~~~~~~iI~De~y~~ 265 (456)
. | .+.++. .++++++ ++| +||||.+.+ ++|+++|+++|+||+|.+
T Consensus 186 ~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi-~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~ 264 (449)
T 3a8u_X 186 LLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVF-VEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITG 264 (449)
T ss_dssp CCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEE-ECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred ccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEE-EcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccC
Confidence 1 4 443422 2344554 466 578997544 389999999999999975
Q ss_pred CCCCCC--C-C--CCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHH---------HhhccCcCChHHHHHHHH
Q 012785 266 PQYTSI--T-Y--PADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKY---------IELNTIGVSKDSQLRAAK 330 (456)
Q Consensus 266 ~~~~~~--~-~--~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~---------~~~~~~~~s~~~q~~a~~ 330 (456)
..+.+. . . ....++ .||||.++ +| +|+||++++ +++++.+... ....+++.+++++.++.+
T Consensus 265 ~g~~g~~~~~~~~~~~~di--~s~sK~l~-~G~~~~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~a 340 (449)
T 3a8u_X 265 FGRTGSMFGADSFGVTPDL--MCIAKQVT-NGAIPMGAVIAS-TEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLA 340 (449)
T ss_dssp TTTTSSSSHHHHHTCCCSE--EEECGGGG-TTSSCCEEEEEE-HHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHH
T ss_pred ccccCcchhhhhcCCCCCE--EEEccccc-CCCCceEEEEEC-HHHHHHhhccCcccccccccccCCCcccHHHHHHHHH
Confidence 433221 1 0 111123 39999998 68 999999997 8898888764 123467889999999998
Q ss_pred HHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCcc-----
Q 012785 331 VLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQE----- 405 (456)
Q Consensus 331 ~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~----- 405 (456)
+|+.+.+. ...++++++++.+.+.|++++.+.... ..++.++|+|++++..
T Consensus 341 al~~~~~~-------------~~~~~~~~~~~~l~~~L~~l~~~~~~~-----------~~~~~g~~~~i~~~~~~~~~~ 396 (449)
T 3a8u_X 341 ALCLLQKE-------------NLVQSVAEVAPHFEKALHGIKGAKNVI-----------DIRNFGLAGAIQIAPRDGDAI 396 (449)
T ss_dssp HHHHHHHT-------------THHHHHHHHHHHHHHHHHTTTTSTTEE-----------EEEEETTEEEEEECCBTTBSS
T ss_pred HHHHHHhc-------------CHHHHHHHHHHHHHHHHHHHhcCCCeE-----------EEeeeEEEEEEEEecCccccc
Confidence 88743221 356677778888888887643221110 0012344789988542
Q ss_pred --HHHHHHHHHhCCEEeecCCCCCCCCCeEEEEe--cCChhHHHHHHHHHHhhh
Q 012785 406 --IEDCESFLKGNKILTRSGKHFGFSPKYVRISM--LDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 406 --~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~--~~~~e~i~~~l~~L~~~l 455 (456)
...+.+.|.++||.++|+ .+++||++ ..+++++++++++|++++
T Consensus 397 ~~~~~~~~~l~~~Gv~v~~~------g~~iRis~~~~~t~~~i~~~l~~l~~~l 444 (449)
T 3a8u_X 397 VRPFEAGMALWKAGFYVRFG------GDTLQFGPTFNSKPQDLDRLFDAVGEVL 444 (449)
T ss_dssp HHHHHHHHHHHHHTEECEEE------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHCCcEEecC------CCEEEEECCCcCCHHHHHHHHHHHHHHH
Confidence 125777777889999996 27899994 459999999999999875
No 171
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.92 E-value=6.7e-25 Score=224.86 Aligned_cols=253 Identities=13% Similarity=0.114 Sum_probs=176.1
Q ss_pred CceEEEccCHHHHHHHHHHHhcC--------CCCCCCcEEEEeCCCCCChhhhhhhcCCe--------------Eeeecc
Q 012785 163 NHHIVVGTGSTQLFQAALYALSS--------QDASEPISVVSAAPYYSSYPSITDCVKSR--------------LYKWAG 220 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~--------~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~--------------~~~~~~ 220 (456)
.++|++|+|++++++.+++++.. +++ +|++.+|+|+++...+...+.. .++.+.
T Consensus 116 ~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~----~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~ 191 (472)
T 3hmu_A 116 LNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKT----VIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPN 191 (472)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCC----EEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCC
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCC----EEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCc
Confidence 46999999999999999998875 345 8999999999998777665432 222221
Q ss_pred --------C--------cccccc-------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCC
Q 012785 221 --------D--------AKRFNK-------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQY 268 (456)
Q Consensus 221 --------d--------~~~l~~-------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~ 268 (456)
| .+.++. .++++|+++.++|++|.+.+ ++|+++|+++|.||+|.+..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr 271 (472)
T 3hmu_A 192 WWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGR 271 (472)
T ss_dssp HHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred cccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcc
Confidence 1 233321 24466666666777787653 389999999999999997544
Q ss_pred CCCCC-----CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHH--HhhccCcCChHHHHHHHHHHHhhhCCCCC
Q 012785 269 TSITY-----PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKY--IELNTIGVSKDSQLRAAKVLKVVSDSCKP 341 (456)
Q Consensus 269 ~~~~~-----~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~--~~~~~~~~s~~~q~~a~~~L~~~~~~~~~ 341 (456)
.+-.. ....+ +.+|||.++..|+|+||++++ +++++.+... ....+++.++++|.++.++|+.+.+.
T Consensus 272 ~G~~~a~~~~~v~pd--i~t~sK~l~gg~~plG~v~~~-~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~--- 345 (472)
T 3hmu_A 272 TGNWFGTQTMGIRPH--IMTIAKGLSSGYAPIGGSIVC-DEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEE--- 345 (472)
T ss_dssp TSSSCHHHHHTCCCS--EEEECGGGTTTSSCCEEEEEE-HHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHHT---
T ss_pred cCccchhHHhCCCCc--eeeechhhhcCCcceEEEEEC-HHHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHHh---
Confidence 43211 11122 347899998555999999997 9999888321 33457889999999999999854322
Q ss_pred CCCcchhHHHHHHHHHH-HHHHHHHHHHHhc---CCccccCCCCcccccccccCCCCCceEEeecCcc------------
Q 012785 342 SGSEDECFFEFTNHQMS-TRWKQLRMAVQKS---GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQE------------ 405 (456)
Q Consensus 342 ~~~~~~~~l~~~~~~~~-~~~~~l~~~L~~~---~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~------------ 405 (456)
...++++ ++.+.+++.|+++ +.+...++.| +|+++.+..+
T Consensus 346 ----------~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G--------------~~~~i~~~~~~~~~~~~~~~~~ 401 (472)
T 3hmu_A 346 ----------NILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVG--------------MMASIALTPNKASRAKFASEPG 401 (472)
T ss_dssp ----------THHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEET--------------TEEEEEECSCGGGTCCBSSCTT
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC--------------ceEEEEEecCccccccccchhH
Confidence 2344555 5566666666543 3233333333 3566666421
Q ss_pred --HHHHHHHHHhCCEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 406 --IEDCESFLKGNKILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 406 --~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
...+.+.|.++||.++|+. +++||+ +..++|++++++++|++++
T Consensus 402 ~~~~~~~~~l~~~Gv~v~~~g------~~iRi~p~~~~t~e~i~~~l~~l~~~l 449 (472)
T 3hmu_A 402 TIGYICRERCFANNLIMRHVG------DRMIISPPLVITPAEIDEMFVRIRKSL 449 (472)
T ss_dssp HHHHHHHHHHHHTTBCCEEET------TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCcEEEecC------CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4567788889999999852 899999 5569999999999999876
No 172
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.92 E-value=7.9e-24 Score=212.30 Aligned_cols=305 Identities=13% Similarity=0.088 Sum_probs=209.9
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
..+|||+.|.|+++ +. +.+... ..+..+ .|.+..+ ..+|+++++++++. + ++++++|++
T Consensus 30 ~~~id~~~~~~~~~-~~-v~~a~~-~~~~~~-----~y~~~~~-----~~~l~~~la~~~~~-------~-~~v~~~~Gt 88 (399)
T 2oga_A 30 VPFLDLKAAYEELR-AE-TDAAIA-RVLDSG-----RYLLGPE-----LEGFEAEFAAYCET-------D-HAVGVNSGM 88 (399)
T ss_dssp BCSCCHHHHHHHTH-HH-HHHHHH-HHHHHT-----CCSSSHH-----HHHHHHHHHHHTTS-------S-EEEEESCHH
T ss_pred CcccccCcCCCCCC-HH-HHHHHH-HHHhcC-----CCCCchh-----HHHHHHHHHHHHCC-------C-eEEEecCHH
Confidence 36789998888765 32 332211 112111 3544455 48999999999863 2 566677779
Q ss_pred HHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-------ccccc---CCCeEEEEcCCCCCC
Q 012785 174 QLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-------KRFNK---DGPYIELVTSPNNPD 242 (456)
Q Consensus 174 ~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-------~~l~~---~~~~~i~v~~P~NPt 242 (456)
+++.+++.++ .++|| +|+++.|+|+.+...++..|.+++.++.|. +.++. .++++|+ |+|||
T Consensus 89 ~a~~~~l~~~~~~~gd----~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~t 161 (399)
T 2oga_A 89 DALQLALRGLGIGPGD----EVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALL---PVHLY 161 (399)
T ss_dssp HHHHHHHHHTTCCTTC----EEEEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCTTEEEEC---CBCGG
T ss_pred HHHHHHHHHhCCCCcC----EEEECCCccHHHHHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCCCCeEEE---EeCCc
Confidence 9999999999 88999 999999999999999999999988776543 33332 2556665 67899
Q ss_pred cccch-----HHhhhcCcEEEeeecCCCCC-CCCCCCCCCCcEEEecC--ccccCCCCceEEEEEEeCHHHHHHHHHHHh
Q 012785 243 GSVRQ-----SVVNRSGGILVHDLAYYWPQ-YTSITYPADHDLMLFTV--SKSTGHAGTRIGWALVKDMEVAKKMTKYIE 314 (456)
Q Consensus 243 G~~~~-----~l~~~~~~~iI~De~y~~~~-~~~~~~~~~~~i~i~S~--SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~ 314 (456)
|.+.+ ++|+++|+++|+||+|.... +.......-.+++++|+ ||.+|.+| |+||++++++++++++.....
T Consensus 162 G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~~~sK~~~~~G-~~g~~~~~~~~~~~~l~~~~~ 240 (399)
T 2oga_A 162 GHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGKNLGCFG-DGGAVVTGDPELAERLRMLRN 240 (399)
T ss_dssp GCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTEETTCTTCEEEEECCTTSSSCCSS-CCEEEEESCHHHHHHHHHHHB
T ss_pred CCccCHHHHHHHHHHcCCEEEEECcccccCccCCeecccccCEEEEeCCCCccCCcCC-ceEEEEeCCHHHHHHHHHHHh
Confidence 99876 38999999999999998532 11111111136999999 79999779 999999966899888877654
Q ss_pred hc------------cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccC-CCC
Q 012785 315 LN------------TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPE-LPS 381 (456)
Q Consensus 315 ~~------------~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~g 381 (456)
.. +...+++.+.++.+.++. ++...++.++.++.+.+.|++++++.+.. +.+
T Consensus 241 ~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~---------------~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~ 305 (399)
T 2oga_A 241 YGSRQKYSHETKGTNSRLDEMQAAVLRIRLAH---------------LDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPD 305 (399)
T ss_dssp TTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHT---------------HHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTT
T ss_pred cCccccccccccccCCCcCHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhccCCCccccCCCCC
Confidence 21 134567777776666651 23344455566777888887765554432 222
Q ss_pred cccccccccCCCCCceEE--eecC-ccHHHHHHHHHhCCEEeecCCCC-----------CC-----------CCCeEEEE
Q 012785 382 QFCTFLGRAFEPQPAFAW--LKCE-QEIEDCESFLKGNKILTRSGKHF-----------GF-----------SPKYVRIS 436 (456)
Q Consensus 382 ~~~~~~~~~~~~~~~f~~--~~~~-~~~~~~~~~l~~~gI~v~pg~~f-----------g~-----------~~~~iRis 436 (456)
+. ++| +.+. .+.+.+.+.|.++||.++++... +. ..+++||+
T Consensus 306 ~~-------------~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~ 372 (399)
T 2oga_A 306 TD-------------PVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLP 372 (399)
T ss_dssp EE-------------CCCSSEEEECSSHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEEC
T ss_pred Cc-------------ceeEEEEEECCCHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEcc
Confidence 22 343 2222 25667888888999999985321 10 02679999
Q ss_pred ecC--ChhHHHHHHHHHHhhh
Q 012785 437 MLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 437 ~~~--~~e~i~~~l~~L~~~l 455 (456)
+.. ++++++++++.|++++
T Consensus 373 ~~~~~t~edi~~~~~~l~~~~ 393 (399)
T 2oga_A 373 IGPHLERPQALRVIDAVREWA 393 (399)
T ss_dssp CSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 863 8999999999999875
No 173
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.92 E-value=7.1e-24 Score=210.33 Aligned_cols=307 Identities=12% Similarity=0.095 Sum_probs=210.8
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
.+++|++.+.|++.+ +.++.. ..+..+ .|.+..+ ..+|+++++++++. +++++++|++
T Consensus 6 ~~~~~l~~~~~~~~~---~~~~~~-~~~~~~-----~~~~~~~-----~~~l~~~la~~~~~--------~~~~~~~~gt 63 (374)
T 3uwc_A 6 VPYSYLERQFADIEP---YLNDLR-EFIKTA-----DFTLGAE-----LEKFEKRFAALHNA--------PHAIGVGTGT 63 (374)
T ss_dssp BCSCCHHHHTSSCHH---HHHHHH-HHHHHT-----CCSSCHH-----HHHHHHHHHHHTTC--------SEEEEESCHH
T ss_pred ceeeccccCCCCchH---HHHHHH-HHHHcC-----CcccChh-----HHHHHHHHHHHhCC--------CcEEEeCCHH
Confidence 356899999988764 332211 112222 2444455 48999999999863 3788899999
Q ss_pred HHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc------Ccccccc---CCCeEEEEcCCCCCCc
Q 012785 174 QLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG------DAKRFNK---DGPYIELVTSPNNPDG 243 (456)
Q Consensus 174 ~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~------d~~~l~~---~~~~~i~v~~P~NPtG 243 (456)
+++.+++.++ .++|| +|+++.|+|+.+...++..|.+++.++. |.+.++. .++++++ |+||||
T Consensus 64 ~a~~~~~~~~~~~~gd----~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~~G 136 (374)
T 3uwc_A 64 DALAMSFKMLNIGAGD----EVITCANTFIASVGAIVQAGATPVLVDSENGYVIDPEKIEAAITDKTKAIM---PVHYTG 136 (374)
T ss_dssp HHHHHHHHHTTCCTTC----EEEEESSSCHHHHHHHHHTTCEEEEECBCTTSSBCGGGTGGGCCTTEEEEC---CBCGGG
T ss_pred HHHHHHHHHcCCCCCC----EEEECCCccHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHhCCCCceEEE---EeCCcC
Confidence 9999999999 89999 9999999999999999999999987775 4444543 2456655 899999
Q ss_pred ccch-----HHhhhcCcEEEeeecCCCCCC-CCCCCCCCCcEEEecCc--cccCCCCceEEEEEEeCHHHHHHHHHHHhh
Q 012785 244 SVRQ-----SVVNRSGGILVHDLAYYWPQY-TSITYPADHDLMLFTVS--KSTGHAGTRIGWALVKDMEVAKKMTKYIEL 315 (456)
Q Consensus 244 ~~~~-----~l~~~~~~~iI~De~y~~~~~-~~~~~~~~~~i~i~S~S--K~~g~~G~RiG~l~~~~~~~~~~l~~~~~~ 315 (456)
...+ ++|+++|+++|+||+|..... .........++++.|+| |.++.+|. .||++++++++.+++......
T Consensus 137 ~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~~~~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~~~~~~~~~~~ 215 (374)
T 3uwc_A 137 NIADMPALAKIAKKHNLHIVEDACQTILGRINDKFVGSWGQFACFSLHPLKNLNVWSD-AGVIITHSDEYAEKLRLYRNH 215 (374)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECSSSSSSCCSSC-CEEEEESCHHHHHHHHHHTBT
T ss_pred CcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeeccccccEEEEeCCCCCcCCccce-eEEEEeCCHHHHHHHHHHHhc
Confidence 9876 489999999999999985322 11111111378888977 99985476 899998877888888776531
Q ss_pred ------------ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCC-ccccCC-CC
Q 012785 316 ------------NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGL-FSVPEL-PS 381 (456)
Q Consensus 316 ------------~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~-~g 381 (456)
.....+.+.+.++...+ +.+++..++.++.++.+.+.|++.+. +.+... .+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~aa~~~~~~---------------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 280 (374)
T 3uwc_A 216 GLINRDVCVEYGINCRMDTIQAVIANRLM---------------NQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREG 280 (374)
T ss_dssp TEEETTEESSCCCBCBCCHHHHHHHHHHG---------------GGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTT
T ss_pred CccccCccccccccCCCCHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCC
Confidence 11223444333332222 23455667777888888888888765 544322 22
Q ss_pred cccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCC-----------C----C-------CCCeEEEEecC
Q 012785 382 QFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHF-----------G----F-------SPKYVRISMLD 439 (456)
Q Consensus 382 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~f-----------g----~-------~~~~iRis~~~ 439 (456)
....++ .+.+..+ +.+.+.+.|.++||.++++... + . ..+.+||++..
T Consensus 281 ~~~~~~---------~~~~~~~-~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~ 350 (374)
T 3uwc_A 281 VYHVFH---------IYVLRVK-YRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHP 350 (374)
T ss_dssp EECCCS---------SEEEEET-THHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCT
T ss_pred CceeeE---------EEEEEcC-CHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCC
Confidence 221110 1333333 5677888899999999998621 0 0 12689999864
Q ss_pred --ChhHHHHHHHHHHhhh
Q 012785 440 --RDENYNLFVQRLSKIL 455 (456)
Q Consensus 440 --~~e~i~~~l~~L~~~l 455 (456)
++++++++++.|++++
T Consensus 351 ~~t~edi~~~~~~l~~~l 368 (374)
T 3uwc_A 351 YLTEEEINYIIKKVREFY 368 (374)
T ss_dssp TSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 8999999999999876
No 174
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.91 E-value=1e-23 Score=216.39 Aligned_cols=271 Identities=11% Similarity=0.050 Sum_probs=189.4
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC--------CCCCCCcEEEEeCCCCCChhhhhhhcCC
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS--------QDASEPISVVSAAPYYSSYPSITDCVKS 213 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~--------~gd~~~~~Vlv~~P~y~~~~~~~~~~g~ 213 (456)
..++++++++++...- +. ..++|++++|+++++..+++++.. .++ +|++.+|+|+++...+...+.
T Consensus 95 ~~~~~~~la~~l~~~~-~~-~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~----~vi~~~~~yHg~~~~~~~~~~ 168 (476)
T 3i5t_A 95 ATSPAARLAEKIATLT-PG-DLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKK----RIIVRYDGYHGSTALTAACTG 168 (476)
T ss_dssp BCHHHHHHHHHHHTTS-ST-TCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCC----EEEEETTCCCCSSHHHHHTCC
T ss_pred CCHHHHHHHHHHHhcC-CC-CcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCC----EEEEEcCCcCcCChhhccccC
Confidence 3667777888775421 11 246899999999999999998863 244 899999999998876665433
Q ss_pred e---------------Eeeecc-----C----------cccccc-------CCCeEEEEcCCCCCCccc-ch--------
Q 012785 214 R---------------LYKWAG-----D----------AKRFNK-------DGPYIELVTSPNNPDGSV-RQ-------- 247 (456)
Q Consensus 214 ~---------------~~~~~~-----d----------~~~l~~-------~~~~~i~v~~P~NPtG~~-~~-------- 247 (456)
. .+.++. + .+.++. .++++++++.++|++|.. .+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~ 248 (476)
T 3i5t_A 169 RTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFK 248 (476)
T ss_dssp CGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHH
T ss_pred ChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHH
Confidence 2 222221 1 233321 345777787778888864 43
Q ss_pred HHhhhcCcEEEeeecCCCCCCCCCC---C-CC--CCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHH-------H
Q 012785 248 SVVNRSGGILVHDLAYYWPQYTSIT---Y-PA--DHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKY-------I 313 (456)
Q Consensus 248 ~l~~~~~~~iI~De~y~~~~~~~~~---~-~~--~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~-------~ 313 (456)
++|+++|+++|.||+|.+..+.+-. . .. ..+ +.+|||.++ .| +|+||++++ +++++.+... .
T Consensus 249 ~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pd--i~t~sK~l~-~G~~plg~v~~~-~~i~~~~~~~~~~~~~~~ 324 (476)
T 3i5t_A 249 AICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPD--IITFAKGVT-SGYVPLGGLAIS-EAVLARISGENAKGSWFT 324 (476)
T ss_dssp HHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCS--EEEECGGGG-TTSSCCEEEEEC-HHHHHTTSGGGCTTCEEC
T ss_pred HHHHHcCCEEEEEecccCCccccCceeeecccCCCcc--hhhhhhhhc-CCCcCeEEEEEC-HHHHHHHhcCCccccccc
Confidence 3899999999999999975443311 1 11 122 347899999 69 999999996 9999888764 3
Q ss_pred hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcC---CccccCCCCccccccccc
Q 012785 314 ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSG---LFSVPELPSQFCTFLGRA 390 (456)
Q Consensus 314 ~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~g~~~~~~~~~ 390 (456)
...+++.+++++.++.++|+.+.+. ...+.++++.+.+.+.|+.+. .+...++
T Consensus 325 ~~~t~~~np~a~aAa~aaL~~~~~~-------------~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~----------- 380 (476)
T 3i5t_A 325 NGYTYSNQPVACAAALANIELMERE-------------GIVDQAREMADYFAAALASLRDLPGVAETRS----------- 380 (476)
T ss_dssp CCCTTTTCHHHHHHHHHHHHHHHHT-------------THHHHHHHHHHHHHHHHHTTTTSTTEEEEEE-----------
T ss_pred ccCCCCcCHHHHHHHHHHHHHHHhH-------------HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-----------
Confidence 3468899999999999999854321 345566667777777776542 2222233
Q ss_pred CCCCCceEEeecCcc-------------HHHHHHHHHhCCEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 391 FEPQPAFAWLKCEQE-------------IEDCESFLKGNKILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 391 ~~~~~~f~~~~~~~~-------------~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
.++|+++.+..+ ...+.+.+.++||.++|. .+++||+ +..+++++++++++|++++
T Consensus 381 ---~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~------g~~iRi~p~l~~t~e~i~~~l~~l~~~l 451 (476)
T 3i5t_A 381 ---VGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPL------GDLCVISPPLIISRAQIDEMVAIMRQAI 451 (476)
T ss_dssp ---ETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEE------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ---cCceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEec------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 333677776432 445777788899999983 2899999 5569999999999999876
No 175
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.91 E-value=9.6e-24 Score=218.79 Aligned_cols=276 Identities=12% Similarity=0.080 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHH-HhcCccCCCceE--EEccCHHHHHHHHHHHhcCCC--------CCCCcEEEEeCCCCCChhhhhhhc
Q 012785 143 PEFAKEVVRLHK-VVGNAITENHHI--VVGTGSTQLFQAALYALSSQD--------ASEPISVVSAAPYYSSYPSITDCV 211 (456)
Q Consensus 143 ~~lr~aia~~~~-~~g~~~~~~~~I--~~t~G~~~al~~~~~~l~~~g--------d~~~~~Vlv~~P~y~~~~~~~~~~ 211 (456)
.++++.+++++. ..|.... ++++ ++|+|+++++.++++++..++ | +|+++.|+|+.+...++..
T Consensus 138 ~~le~~l~~~la~~~g~~~~-~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d----~Vi~~~~~~~~~~~~~~~~ 212 (514)
T 3mad_A 138 AKFEAEVVAMTAHMLGGDAA-GGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAP----EAVVPVSAHAAFDKAAQYF 212 (514)
T ss_dssp HHHHHHHHHHHHHHTTGGGG-TSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSC----EEEEETTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCc-cCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCC----eEEEeCccchHHHHHHHHc
Confidence 577777777764 3454432 3577 999999999999999998776 7 9999999999999999999
Q ss_pred CCeEeeecc------Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC---------
Q 012785 212 KSRLYKWAG------DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY--------- 268 (456)
Q Consensus 212 g~~~~~~~~------d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~--------- 268 (456)
|++++.++. |.+.++. .++++|++++||||||.+.+ ++|+++|+++|+|++|.+...
T Consensus 213 G~~v~~v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~ 292 (514)
T 3mad_A 213 GIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYP 292 (514)
T ss_dssp TCEEEEECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCC
T ss_pred CCeeEEeeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCC
Confidence 999988775 4444442 36789999999999999977 489999999999999986321
Q ss_pred -CCCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHh---------hc-cCcCC---hHHHHHHHHHHH
Q 012785 269 -TSIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE---------LN-TIGVS---KDSQLRAAKVLK 333 (456)
Q Consensus 269 -~~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~---------~~-~~~~s---~~~q~~a~~~L~ 333 (456)
.++. ...+.++++.|++|.++ +|.++||++++++.+......... .. ....+ ...+.++...+.
T Consensus 293 ~~~~~~~~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~ 371 (514)
T 3mad_A 293 VPPFDFRLEGVTSVSADTHKYGY-GAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLG 371 (514)
T ss_dssp CCCCSTTSTTCCEEEECTTTTTC-CCSSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHH
T ss_pred CCcccccCCCCcEEEECchhccC-CCCCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHh
Confidence 1221 23345799999999865 788999999985543321100000 00 01112 234444444443
Q ss_pred hhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHH
Q 012785 334 VVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESF 412 (456)
Q Consensus 334 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~ 412 (456)
...+++..++++++++++.+.|++++++.+..+..+ ++|+..+. +...+.+.
T Consensus 372 -------------~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~--------------~~~~~~~~~~~~~l~~~ 424 (514)
T 3mad_A 372 -------------EEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLW--------------VIAVASDELNIYQVMEE 424 (514)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCSS--------------EEEEECSSSCHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCeE--------------EEEEeCCCCCHHHHHHH
Confidence 456778888899999999999998766655443322 56776643 56778888
Q ss_pred HHhCCEEeecCCCCCCCCCeEEEEecC---ChhHHHHHHHHHHhhh
Q 012785 413 LKGNKILTRSGKHFGFSPKYVRISMLD---RDENYNLFVQRLSKIL 455 (456)
Q Consensus 413 l~~~gI~v~pg~~fg~~~~~iRis~~~---~~e~i~~~l~~L~~~l 455 (456)
|.++||.+ +|..| ++++|+++.. +++++++++++|++++
T Consensus 425 L~~~Gi~v-~g~~~---~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l 466 (514)
T 3mad_A 425 MAGRGWRL-NGLHR---PPAFHVALTLRHTEPGVVDRFLADLQDAV 466 (514)
T ss_dssp HHTTTCBC-EEETT---TTEEEEECCGGGGSTTHHHHHHHHHHHHH
T ss_pred HHhcCCEe-ccCCC---CCeEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 99999998 55444 5689999862 5689999999998875
No 176
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.91 E-value=4.5e-23 Score=210.32 Aligned_cols=276 Identities=11% Similarity=0.053 Sum_probs=186.0
Q ss_pred cccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCC-CChhhhh
Q 012785 130 YFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYY-SSYPSIT 208 (456)
Q Consensus 130 ~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y-~~~~~~~ 208 (456)
.|.+..| ..+|+++++++++. +++++|+|+++++.+++++++++| . +++.|+| ..+...+
T Consensus 70 ~y~~~~~-----~~~l~~~la~~~~~--------~~~~~~~~gt~a~~~al~~l~~~g-----d-i~~~~~~~~~~~~~~ 130 (456)
T 2ez2_A 70 AYAGSEN-----FYHLERTVQELFGF--------KHIVPTHQGRGAENLLSQLAIKPG-----Q-YVAGNMYFTTTRYHQ 130 (456)
T ss_dssp CSSSCHH-----HHHHHHHHHHHHCC--------SEEEEESSHHHHHHHHHHHHCCTT-----C-EEEESSCCHHHHHHH
T ss_pred hcccChh-----HHHHHHHHHHHhCC--------CcEEEeCCcHHHHHHHHHHhCCCC-----C-EeccccccchhHHHH
Confidence 4665556 48999999999853 489999999999999999998877 4 7889999 6668888
Q ss_pred hhcCCeEeeeccC----------------cccccc---CCC----eEEEEcCCCC-CCcccch--------HHhhhcCcE
Q 012785 209 DCVKSRLYKWAGD----------------AKRFNK---DGP----YIELVTSPNN-PDGSVRQ--------SVVNRSGGI 256 (456)
Q Consensus 209 ~~~g~~~~~~~~d----------------~~~l~~---~~~----~~i~v~~P~N-PtG~~~~--------~l~~~~~~~ 256 (456)
...|++++.++.+ .+.++. .++ +++++++|+| |||.+++ ++|+++|++
T Consensus 131 ~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~ 210 (456)
T 2ez2_A 131 EKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIK 210 (456)
T ss_dssp HHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCC
T ss_pred HHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCe
Confidence 8899998866554 233322 123 8899999999 9999876 278999999
Q ss_pred EEeeecCCC----------CCCCCCC--------CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhc--
Q 012785 257 LVHDLAYYW----------PQYTSIT--------YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELN-- 316 (456)
Q Consensus 257 iI~De~y~~----------~~~~~~~--------~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~-- 316 (456)
+|+||+|.. ..+.+.. ..... +++.|++|..+ +| |.||++++++++++.+.......
T Consensus 211 li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d-~~~~S~kk~~~-~~-~gG~~~~~~~~~~~~~~~~~~~~~~ 287 (456)
T 2ez2_A 211 VFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYAD-GCTMSGKKDCL-VN-IGGFLCMNDDEMFSSAKELVVVYEG 287 (456)
T ss_dssp EEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCS-EEEEETTTTTC-CS-SCEEEEESCHHHHHHHHHHHHHHTC
T ss_pred EEEEccccccccccccccccccCCcchhhhhhhhcccCC-EEEEeCcccCC-CC-ceeEEEECCHHHHHHHHHHHhhccC
Confidence 999999874 2333221 11223 44457888765 77 89999985588988887764321
Q ss_pred ---cCcCChHHHHH-HHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCC
Q 012785 317 ---TIGVSKDSQLR-AAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFE 392 (456)
Q Consensus 317 ---~~~~s~~~q~~-a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~ 392 (456)
..+.+.....+ +...++. .+ +...++.++..+.+.+.|++. ++.+..|.+++
T Consensus 288 ~~~~~~~~~~~~~a~a~~~~~~-----------~~---~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~~~~--------- 343 (456)
T 2ez2_A 288 MPSYGGLAGRDMEAMAIGLREA-----------MQ---YEYIEHRVKQVRYLGDKLKAA-GVPIVEPVGGH--------- 343 (456)
T ss_dssp CTTTTTCCHHHHHHHHHHHHHH-----------TC---HHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSS---------
T ss_pred cccccCcchhHHHHHHHHHHHH-----------hH---HHHHHHHHHHHHHHHHHHhcC-CCccccCCCce---------
Confidence 12334332222 3333331 01 123333445556777777765 35555565555
Q ss_pred CCCceEEeecC----c-cHHHH-----HHHH-HhCCEEeec-CCCC-------C----CCCCeEEEEec---CChhHHHH
Q 012785 393 PQPAFAWLKCE----Q-EIEDC-----ESFL-KGNKILTRS-GKHF-------G----FSPKYVRISML---DRDENYNL 446 (456)
Q Consensus 393 ~~~~f~~~~~~----~-~~~~~-----~~~l-~~~gI~v~p-g~~f-------g----~~~~~iRis~~---~~~e~i~~ 446 (456)
|+|+.+. . +.+.+ .+.| +++||.+.+ |..| + ...+++||++. .+++++++
T Consensus 344 ----~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~ 419 (456)
T 2ez2_A 344 ----AVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDV 419 (456)
T ss_dssp ----EEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHH
T ss_pred ----EEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHH
Confidence 7888762 1 22222 4444 789999876 4433 1 12479999998 58999999
Q ss_pred HHHHHHhhh
Q 012785 447 FVQRLSKIL 455 (456)
Q Consensus 447 ~l~~L~~~l 455 (456)
++++|++++
T Consensus 420 ~~~~l~~~l 428 (456)
T 2ez2_A 420 VADGIIKLY 428 (456)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 177
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.91 E-value=2.4e-23 Score=208.60 Aligned_cols=270 Identities=14% Similarity=0.083 Sum_probs=187.4
Q ss_pred HHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh-h--hhhcC--CeEeeecc-
Q 012785 147 KEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS-I--TDCVK--SRLYKWAG- 220 (456)
Q Consensus 147 ~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~-~--~~~~g--~~~~~~~~- 220 (456)
++++++++. +++.|++++| ++++.+++.++.++|| +|++++|+|+.+.. . ....| .+++.++.
T Consensus 76 ~~la~~~g~------~~~~i~~~sG-t~a~~~a~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 144 (405)
T 2vi8_A 76 ERAKQLFGA------EHANVQPHSG-AQANMAVYFTVLEHGD----TVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVD 144 (405)
T ss_dssp HHHHHHHTC------SEEECCCSSH-HHHHHHHHHHHCCTTC----EEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBC
T ss_pred HHHHHHhCC------CceEEEecCc-HHHHHHHHHHhcCCCC----EEEEecccccchhcccchhhhccceeEEEecccc
Confidence 466766643 2334555676 9999999999999999 99999999998854 2 12334 36666543
Q ss_pred ------Ccccccc----CCCeEEEEcCCCCC-Ccccch---HHhhhcCcEEEeeecCCC----CCCCCCCCCCCCcEEEe
Q 012785 221 ------DAKRFNK----DGPYIELVTSPNNP-DGSVRQ---SVVNRSGGILVHDLAYYW----PQYTSITYPADHDLMLF 282 (456)
Q Consensus 221 ------d~~~l~~----~~~~~i~v~~P~NP-tG~~~~---~l~~~~~~~iI~De~y~~----~~~~~~~~~~~~~i~i~ 282 (456)
|.+.++. .+++++++ +|+|+ .-..+. ++|+++|+++|+||+|.. ....... ....+++++
T Consensus 145 ~~~~~~d~~~l~~~i~~~~~~~v~~-~~~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~-~~~~di~~~ 222 (405)
T 2vi8_A 145 PETHVIDYDDVREKARLHRPKLIVA-AAAAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP-VPYAHFVTT 222 (405)
T ss_dssp TTTCSBCHHHHHHHHHHHCCSEEEE-CCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS-TTTCSEEEE
T ss_pred cccCCcCHHHHHHHHHhcCCeEEEE-eCCCCCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCc-cccCCEEEE
Confidence 4444432 25678777 55443 222233 479999999999999983 1111111 113459999
Q ss_pred cCccccC-CCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHH-HHHHHhhhCCCCCCCCcchhHHHHHHHHHHHH
Q 012785 283 TVSKSTG-HAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRA-AKVLKVVSDSCKPSGSEDECFFEFTNHQMSTR 360 (456)
Q Consensus 283 S~SK~~g-~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a-~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 360 (456)
|+||.++ ++| ||++++ +++++.+.........+.+.+.|.++ .++++.+. +++++..+++++++
T Consensus 223 s~sK~~~g~~g---G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~----------~~~~~~~~~~~~~~ 288 (405)
T 2vi8_A 223 TTHKTLRGPRG---GMILCQ-EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEAL----------QDDFKAYAKRVVDN 288 (405)
T ss_dssp ESSSTTCCCSC---EEEEEC-HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHH----------SHHHHHHHHHHHHH
T ss_pred eccccCCCCCC---eEEEEc-HHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHH
Confidence 9999997 666 999997 89999888775444455544444444 45665321 24678899999999
Q ss_pred HHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCC----CCC-CCCe
Q 012785 361 WKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKH----FGF-SPKY 432 (456)
Q Consensus 361 ~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~----fg~-~~~~ 432 (456)
++.+.+.|++. ++.+..+.+ .++|+|+.++. +.+.+.+.|.++||.+++|.. ++. .+++
T Consensus 289 ~~~l~~~L~~~-g~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~ 355 (405)
T 2vi8_A 289 AKRLASALQNE-GFTLVSGGT------------DNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSG 355 (405)
T ss_dssp HHHHHHHHHHT-TCEEGGGSC------------SSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSE
T ss_pred HHHHHHHHHhC-CCeEecCCC------------CceEEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCCCCCc
Confidence 99999999987 455544321 12378998863 466788888999999999863 332 3578
Q ss_pred EEEEecC------ChhHHHHHHHHHHhhhC
Q 012785 433 VRISMLD------RDENYNLFVQRLSKILS 456 (456)
Q Consensus 433 iRis~~~------~~e~i~~~l~~L~~~l~ 456 (456)
+|+++.. +++++++++++|+++++
T Consensus 356 iRis~~~~~~~~~~~~~i~~~~~~l~~~~~ 385 (405)
T 2vi8_A 356 IRIGTAAVTTRGFGLEEMDEIAAIIGLVLK 385 (405)
T ss_dssp EEEECHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred eEEeeeeeeecCCCHHHHHHHHHHHHHHHh
Confidence 9999873 79999999999998763
No 178
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.91 E-value=1.5e-22 Score=203.64 Aligned_cols=283 Identities=13% Similarity=0.100 Sum_probs=192.2
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh----hhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT----DCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~----~~~g~~~~~ 217 (456)
..+|++.+|++++. +++++++|+++++++++.+++++|| +|+++.|.|++....+ +..|+++..
T Consensus 84 ~~~le~~lA~l~g~--------~~~i~~ssGt~Ai~~al~~l~~~Gd----~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~ 151 (415)
T 2fq6_A 84 HFSLQQAMCELEGG--------AGCVLFPCGAAAVANSILAFIEQGD----HVLMTNTAYEPSQDFCSKILSKLGVTTSW 151 (415)
T ss_dssp HHHHHHHHHHHHTC--------SEEEEESSHHHHHHHHHHTTCCTTC----EEEEETTSCHHHHHHHHHTGGGGTCEEEE
T ss_pred HHHHHHHHHHHhCC--------CeEEEeCCHHHHHHHHHHHHhCCCC----EEEEeCCCchHHHHHHHHHHHHcCcEEEE
Confidence 36799999998863 3566678889999999999999999 9999999998876543 457888877
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhh--cCcEEEeeecCCCCC-CCCCCCCCCCcEEEecCc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNR--SGGILVHDLAYYWPQ-YTSITYPADHDLMLFTVS 285 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~--~~~~iI~De~y~~~~-~~~~~~~~~~~i~i~S~S 285 (456)
++. |.+.++. .++++|++++|+||||.+++ ++|++ +|+++|+|++|..+. ..++ ..+.+++++|+|
T Consensus 152 v~~~d~~~le~ai~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~--~~g~Div~~S~s 229 (415)
T 2fq6_A 152 FDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKAL--DFGIDVSIQAAT 229 (415)
T ss_dssp ECTTCGGGGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGG--GGTCSEEEEETT
T ss_pred ECCCCHHHHHHhhccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCcc--ccCCeEEEEeCc
Confidence 764 5566654 36799999999999999987 48999 999999999998532 2223 245689999999
Q ss_pred cccCCCCce-EEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 012785 286 KSTGHAGTR-IGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQL 364 (456)
Q Consensus 286 K~~g~~G~R-iG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 364 (456)
|.+|.+|.+ +||++++ ++++++++..........++..+.++...++ .+....+...++.+.+
T Consensus 230 K~lg~~g~~~~G~l~~~-~~~~~~l~~~~~~~G~~~~~~~a~~~~~~l~---------------~l~~r~~~~~~n~~~l 293 (415)
T 2fq6_A 230 KYLVGHSDAMIGTAVCN-ARCWEQLRENAYLMGQMVDADTAYITSRGLR---------------TLGVRLRQHHESSLKV 293 (415)
T ss_dssp TTTTCSSSCCCEEEEEC-TTTHHHHHHHHHHTTCCCCHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHH
T ss_pred cccCCCCCceEEEEEeC-HHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh---------------HHHHHHHHHHHHHHHH
Confidence 999988865 6999986 6788888776653344455555554444443 3344555667778888
Q ss_pred HHHHHhcCCccccCCCCcc----cccccccCCCCCceEEeecCcc--HHHHHHHHHh---CCEEeecCCC----------
Q 012785 365 RMAVQKSGLFSVPELPSQF----CTFLGRAFEPQPAFAWLKCEQE--IEDCESFLKG---NKILTRSGKH---------- 425 (456)
Q Consensus 365 ~~~L~~~~~~~~~~~~g~~----~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~l~~---~gI~v~pg~~---------- 425 (456)
.+.|++.+.+.....++.- .....+.....+..+++.+++. .+....++.. .++.+..|+.
T Consensus 294 ~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~ 373 (415)
T 2fq6_A 294 AEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILANQPE 373 (415)
T ss_dssp HHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECSCCCSSSCEEEEECHH
T ss_pred HHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEeccCCCCceeEEecCCC
Confidence 8889887543211111100 0000000112345688888752 4445555544 3455555522
Q ss_pred ----------CCCCCCeEEEEecC--ChhHHHHHHHHHHhh
Q 012785 426 ----------FGFSPKYVRISMLD--RDENYNLFVQRLSKI 454 (456)
Q Consensus 426 ----------fg~~~~~iRis~~~--~~e~i~~~l~~L~~~ 454 (456)
.|..++.||+|++. ++++++.+.+.|+++
T Consensus 374 ~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~~ 414 (415)
T 2fq6_A 374 HIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFARI 414 (415)
T ss_dssp HHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHTT
T ss_pred ccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHhh
Confidence 23346899999986 456677777777654
No 179
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.91 E-value=9.5e-24 Score=215.30 Aligned_cols=305 Identities=10% Similarity=0.008 Sum_probs=186.6
Q ss_pred CCCCeEEecCCCCC---CCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 92 GGERIINVDHGDPT---MYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~p~---~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
.++..||+..|.+. ...++.+.++.. ..+..+. .| .+ ..++++++++++..... ..++|++
T Consensus 55 ~g~~~iD~~~~~~~~~lg~~~~~v~~a~~-~~~~~~~----~~---~~-----~~~~~~~la~~l~~~~~---~~~~v~~ 118 (453)
T 2cy8_A 55 DGNVYLDFFGGHGALVLGHGHPRVNAAIA-EALSHGV----QY---AA-----SHPLEVRWAERIVAAFP---SIRKLRF 118 (453)
T ss_dssp TCCEEEESCTTTTSCTTCBTCHHHHHHHH-HHHTTTC----SS---CS-----SCHHHHHHHHHHHHHCT---TCSEEEE
T ss_pred CCCEEEECcccHhhcccCCCCHHHHHHHH-HHHHhCC----CC---CC-----CCHHHHHHHHHHHhhCC---CCCEEEE
Confidence 45678999888532 223444443322 1122221 12 12 36889999999855422 3579999
Q ss_pred ccCHHHHHHHHHHH---hcCCCCCCCcEEEEeCCCCCChhhhhhh-----------cCCe------Eeeec-cCcccccc
Q 012785 169 GTGSTQLFQAALYA---LSSQDASEPISVVSAAPYYSSYPSITDC-----------VKSR------LYKWA-GDAKRFNK 227 (456)
Q Consensus 169 t~G~~~al~~~~~~---l~~~gd~~~~~Vlv~~P~y~~~~~~~~~-----------~g~~------~~~~~-~d~~~l~~ 227 (456)
|+|+++++..++++ +..+ + +|++.+|+|+++...+.. .|.. ++.++ .|.+.++.
T Consensus 119 ~~gg~eA~~~al~~ar~~~~~-~----~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~ 193 (453)
T 2cy8_A 119 TGSGTETTLLALRVARAFTGR-R----MILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRPDDIEGMRE 193 (453)
T ss_dssp ESCHHHHHHHHHHHHHHHHCC-C----EEEEECC----------------------------CGGGEEEECTTCHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHhhCC-C----EEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCCCCHHHHHH
Confidence 99999999999998 5554 5 799999999976653322 2332 23333 25555542
Q ss_pred ------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC---CCCCCcEEEecCccccC
Q 012785 228 ------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT---YPADHDLMLFTVSKSTG 289 (456)
Q Consensus 228 ------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~---~~~~~~i~i~S~SK~~g 289 (456)
.++++|+++..+||||.+++ ++|+++|+++|+||+|.+. +.+.. ...+...-+.||||.++
T Consensus 194 ~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~ 272 (453)
T 2cy8_A 194 VFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQALLDVQPDLTCLAKASA 272 (453)
T ss_dssp HHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCTTHHHHHHTCCCSEEEEEGGGG
T ss_pred HHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCchhhhHHhCCCCcEEEEChhhh
Confidence 24456555333578997653 2899999999999999864 22211 00111111449999999
Q ss_pred CCCceEEEEEEeCHHHHHHHHH-----HHhhccCcCChHHHHHHHHHHHh-hhCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 012785 290 HAGTRIGWALVKDMEVAKKMTK-----YIELNTIGVSKDSQLRAAKVLKV-VSDSCKPSGSEDECFFEFTNHQMSTRWKQ 363 (456)
Q Consensus 290 ~~G~RiG~l~~~~~~~~~~l~~-----~~~~~~~~~s~~~q~~a~~~L~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 363 (456)
+|+|+||++++ +++++.+.. .....+++.+++++.++.+.|+. + .. ...++++++++.
T Consensus 273 -~G~~~G~v~~~-~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~~-------------~~~~~~~~~~~~ 336 (453)
T 2cy8_A 273 -GGLPGGILGGR-EDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-ED-------------DVCAKINDLGQF 336 (453)
T ss_dssp -TTSSCEEEEEC-HHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-HT-------------THHHHHHHHHHH
T ss_pred -CCcceEEEech-HHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-hh-------------hHHHHHHHHHHH
Confidence 69999999997 888887754 12335788999999999998884 3 21 234555666666
Q ss_pred HHHHHHhc----CCccccCCCCcccccccccCCCCCceEEeecCc------------------c---HHHHHHHHHhCCE
Q 012785 364 LRMAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ------------------E---IEDCESFLKGNKI 418 (456)
Q Consensus 364 l~~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~------------------~---~~~~~~~l~~~gI 418 (456)
+.+.|+++ +.....++ .++|+|+.++. + ...+.+.|.++||
T Consensus 337 l~~~L~~~~~~~~~~~~~~~--------------~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv 402 (453)
T 2cy8_A 337 AREAMNHLFARKGLNWLAYG--------------RFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGV 402 (453)
T ss_dssp HHHHHHHHHHHTTCCEEEEC--------------CTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHhhCCCcEEEEE--------------eeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCe
Confidence 66666543 32111222 33378888863 1 3457777788999
Q ss_pred EeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 419 LTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 419 ~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
.+.|+ +.+|+++..+++++++++++|++++
T Consensus 403 ~v~~~-------~~~~l~~~~t~~~i~~~l~~l~~~l 432 (453)
T 2cy8_A 403 DIGGR-------GSVFLSAQHEREHVEHLVTTFDRVL 432 (453)
T ss_dssp ECBTT-------TEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred EEeCC-------CCEEeeccCCHHHHHHHHHHHHHHH
Confidence 99763 2478887669999999999999875
No 180
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.91 E-value=1.2e-22 Score=201.20 Aligned_cols=272 Identities=10% Similarity=0.006 Sum_probs=193.5
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh---cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL---SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKW 218 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l---~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~ 218 (456)
..+++++++++++. +++++|+|+++++.+++.++ .++|| +|++++|+|+.+...++..|++++.+
T Consensus 34 ~~~l~~~la~~~~~--------~~v~~~~ggt~al~~~~~~~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~~ 101 (375)
T 2fnu_A 34 SLLFEEALCEFLGV--------KHALVFNSATSALLTLYRNFSEFSADRN----EIITTPISFVATANMLLESGYTPVFA 101 (375)
T ss_dssp HHHHHHHHHHHHTC--------SEEEEESCHHHHHHHHHHHSSCCCTTSC----EEEECSSSCTHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHhCC--------CeEEEeCCHHHHHHHHHHHhcccCCCCC----EEEECCCccHhHHHHHHHCCCEEEEe
Confidence 48999999999963 28999999999999999999 88999 99999999999999999999998877
Q ss_pred ccC------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEec
Q 012785 219 AGD------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLFT 283 (456)
Q Consensus 219 ~~d------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~S 283 (456)
+.| .+.++. .+++++++++| ||.+.+ ++|+++|+++|+|++|......... ...-.++.+.|
T Consensus 102 ~~~~~~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s 178 (375)
T 2fnu_A 102 GIKNDGNIDELALEKLINERTKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFS 178 (375)
T ss_dssp CBCTTSSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEE
T ss_pred ccCCCCCCCHHHHHhhcCcCceEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECccccCCeECCeeccccCCeEEEe
Confidence 654 444443 25677777666 999876 4899999999999999853221110 01112589999
Q ss_pred Cc--cccCCCCceEEEEEE-eCHHHHHHHHHHHhhcc----------------CcCChHHHHHHHHHHHhhhCCCCCCCC
Q 012785 284 VS--KSTGHAGTRIGWALV-KDMEVAKKMTKYIELNT----------------IGVSKDSQLRAAKVLKVVSDSCKPSGS 344 (456)
Q Consensus 284 ~S--K~~g~~G~RiG~l~~-~~~~~~~~l~~~~~~~~----------------~~~s~~~q~~a~~~L~~~~~~~~~~~~ 344 (456)
|| |.+|. | +|++++ +++++++++........ .+.+.+...++.. .
T Consensus 179 ~s~~K~~~~-g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~----------- 242 (375)
T 2fnu_A 179 FHAIKPITT-A--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLS--Q----------- 242 (375)
T ss_dssp CCTTSSSCC-S--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHH--H-----------
T ss_pred CCCCCCccc-c--CceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHH--H-----------
Confidence 99 99984 7 788888 45788888877643111 1334333322222 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC-CcccccccccCCCCCceEEeecCc----cHHHHHHHHHhCCEE
Q 012785 345 EDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELP-SQFCTFLGRAFEPQPAFAWLKCEQ----EIEDCESFLKGNKIL 419 (456)
Q Consensus 345 ~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-g~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~~~gI~ 419 (456)
.+.+++..++.+++++.+.+.|++++++.+..+. +.. ..+.++|+.++. +.+.+.+.|.++||.
T Consensus 243 --~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~ 311 (375)
T 2fnu_A 243 --LKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDK---------SSNHLYPILMHQKFFTCKKLILESLHKRGIL 311 (375)
T ss_dssp --HTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSC---------CCCSCEEEEECGGGGGGHHHHHHHHHHTTEE
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCC---------cceEEEEEEeCccccchHHHHHHHHHHCCCC
Confidence 2245677788889999999999987655554431 100 011145777753 566788888899999
Q ss_pred eecC----CC---CC-------C------CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 420 TRSG----KH---FG-------F------SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 420 v~pg----~~---fg-------~------~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
++.+ .. |+ . ..+++||++.. +++++++++++|++++
T Consensus 312 v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~ 369 (375)
T 2fnu_A 312 AQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTF 369 (375)
T ss_dssp CBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 9832 11 11 0 12689999874 8899999999999875
No 181
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.91 E-value=7.1e-24 Score=214.33 Aligned_cols=268 Identities=12% Similarity=0.020 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHH---hcCCCCCCCcEEEEeCCCCCChhhhhhh----------
Q 012785 144 EFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYA---LSSQDASEPISVVSAAPYYSSYPSITDC---------- 210 (456)
Q Consensus 144 ~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~---l~~~gd~~~~~Vlv~~P~y~~~~~~~~~---------- 210 (456)
++++.+++.+..... ..++|++|+|+++++..++++ +.. ++ +|++.+|+|+++...+..
T Consensus 92 ~~~~~l~~~l~~~~~---~~~~v~~~~~g~ea~~~al~~ar~~~~-~~----~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 163 (424)
T 2e7u_A 92 PLEVALAKKVKRAYP---FVDLVRFVNSGTEATMSALRLARGYTG-RP----YIVKFRGNYHGHADGLLVEAGSGALTLG 163 (424)
T ss_dssp HHHHHHHHHHHHHCT---TCCEEEEESSHHHHHHHHHHHHHHHHC-CC----EEEEETTCCCCCCGGGSEECCSSSCCBC
T ss_pred HHHHHHHHHHHHhCC---CCCEEEEeCCHHHHHHHHHHHHHHhhC-CC----EEEEECCCcCCCcHHHHHhcCCcccccC
Confidence 444555555432211 246999999999999999986 444 45 899999999987654321
Q ss_pred ----cCC------eEeeec-cCcccccc------CCCeEEEEcCCCCC-Ccccch---------HHhhhcCcEEEeeecC
Q 012785 211 ----VKS------RLYKWA-GDAKRFNK------DGPYIELVTSPNNP-DGSVRQ---------SVVNRSGGILVHDLAY 263 (456)
Q Consensus 211 ----~g~------~~~~~~-~d~~~l~~------~~~~~i~v~~P~NP-tG~~~~---------~l~~~~~~~iI~De~y 263 (456)
.|. +++.++ .|.+.++. .+++ +++++|+|| ||.+++ ++ +++|+++|+||+|
T Consensus 164 ~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~-~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~ 241 (424)
T 2e7u_A 164 VPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIA-AIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVM 241 (424)
T ss_dssp EESSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEE-EEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTT
T ss_pred CCCCCCCCCccCCceEeCCCCCHHHHHHHHHhCCCCEE-EEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCc
Confidence 232 234443 25555542 2334 445578665 897654 37 8999999999999
Q ss_pred CCCCCCCCC---CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHH---hhccCcCChHHHHHHHHHHHhhhC
Q 012785 264 YWPQYTSIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI---ELNTIGVSKDSQLRAAKVLKVVSD 337 (456)
Q Consensus 264 ~~~~~~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~---~~~~~~~s~~~q~~a~~~L~~~~~ 337 (456)
.+. ..+-. ...+...-+.||||.+| +|+|+||++++ +++++.+.... ...+++.++++|.++.++|+.+.+
T Consensus 242 ~g~-~~g~~~~~~~~~~~~di~s~sK~l~-~G~~~G~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 318 (424)
T 2e7u_A 242 TGF-RLAFGGATELLGLKPDLVTLGKILG-GGLPAAAYAGR-REIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEE 318 (424)
T ss_dssp TTT-TSSTTHHHHHHTCCCSEEEECGGGG-TTSSCEEEEEC-HHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHH
T ss_pred ccc-ccchhHHHHHhCCCcchhhhhhhhh-CCcceEEEEEc-HHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHh
Confidence 964 22111 00011111349999999 79999999997 88888776521 234678899999999998884322
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc----CCccccCCCCcccccccccCCCCCceEEeecCc---------
Q 012785 338 SCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--------- 404 (456)
Q Consensus 338 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--------- 404 (456)
.+...++++++++.+.+.|+++ +.....++ .++|+|+.++.
T Consensus 319 ------------~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~--------------~g~~~~i~~~~~~~~~~~~~ 372 (424)
T 2e7u_A 319 ------------NPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNR--------------VGSMITVFFTEGPVVTFQDA 372 (424)
T ss_dssp ------------CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEE--------------ETTEEEEESSSSCCCSHHHH
T ss_pred ------------ccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEe--------------eceEEEEEEeCCCCcchhhh
Confidence 1245666777777777777653 32111222 23378888853
Q ss_pred ------cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 405 ------EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 405 ------~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
....+.+.|.++||.++||. ...+|+++..+++++++++++|++++
T Consensus 373 ~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~~~~~~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 373 RRTDTELFKRFFHGLLDRGIYWPPSN-----FEAAFLSVAHREEDVEKTLEALRKAL 424 (424)
T ss_dssp TTSCHHHHHHHHHHHHTTTEECCSSS-----SSCEECCTTCCHHHHHHHHHHHHHHC
T ss_pred cccCHHHHHHHHHHHHHCCeEEeccC-----CCceEeeccCCHHHHHHHHHHHHHhC
Confidence 13457777789999999975 23578887679999999999999864
No 182
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.91 E-value=4.5e-22 Score=200.11 Aligned_cols=261 Identities=14% Similarity=0.092 Sum_probs=175.5
Q ss_pred CCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh---hhhhcC--CeEeeec------cCcccccc---
Q 012785 162 ENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS---ITDCVK--SRLYKWA------GDAKRFNK--- 227 (456)
Q Consensus 162 ~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~---~~~~~g--~~~~~~~------~d~~~l~~--- 227 (456)
++++|++++| ++++.+++.+++++|| +|++++|+|+.+.. .....| ..++.++ +|.+.++.
T Consensus 87 ~~~~i~~~sG-t~a~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~ 161 (417)
T 3n0l_A 87 KFANVQPNSG-SQANQGVYAALINPGD----KILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAK 161 (417)
T ss_dssp SEEECCCSSH-HHHHHHHHHHHSCTTC----EEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHH
T ss_pred CCcceEeccH-HHHHHHHHHHhcCCCC----EEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHH
Confidence 3457888888 7999999999999999 99999999987655 333333 3444444 34444432
Q ss_pred -CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCC----CCCCCCCCCCCCcEEEecCccccCCCCceEEE
Q 012785 228 -DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYW----PQYTSITYPADHDLMLFTVSKSTGHAGTRIGW 297 (456)
Q Consensus 228 -~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~----~~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~ 297 (456)
.++++|++++|+| |..++ ++|+++|+++|+||+|+. ....+. ...+.+++++|+||.+ +|.|+||
T Consensus 162 ~~~~~~v~~~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~-~~~~~di~~~s~sK~l--~g~~~G~ 236 (417)
T 3n0l_A 162 KEKPKLIVCGASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPS-PFPYAHVVSSTTHKTL--RGPRGGI 236 (417)
T ss_dssp HHCCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC-CTTTCSEEEEESSTTT--CSCSCEE
T ss_pred hcCCeEEEECCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCC-ccccceEEEeeCcccc--CCCCeeE
Confidence 3678998888887 55544 389999999999999752 111111 1124579999999977 7889999
Q ss_pred EEEeCHHHHHHHHHHHhhccC-cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 012785 298 ALVKDMEVAKKMTKYIELNTI-GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSV 376 (456)
Q Consensus 298 l~~~~~~~~~~l~~~~~~~~~-~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~ 376 (456)
++++++++++.+......... +.+...+.++...+... .++.++..+++++++++.+.+.|++.+ +.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~----------~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~ 305 (417)
T 3n0l_A 237 IMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFN----------LSDEWKVYAKQVRTNAQVLANVLMDRK-FKL 305 (417)
T ss_dssp EEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH----------TSHHHHHHHHHHHHHHHHHHHHHHHTT-CEE
T ss_pred EEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHH----------HhhhHHHHHHHHHHHHHHHHHHHHhCC-cee
Confidence 999768899988877543333 33444444444445421 134567888889999999999998843 443
Q ss_pred cCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCCCC-----CCCeEEEEec------CChh
Q 012785 377 PELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHFGF-----SPKYVRISML------DRDE 442 (456)
Q Consensus 377 ~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~fg~-----~~~~iRis~~------~~~e 442 (456)
... + ..++++|+.++. +.+.+.+.|+++||.++++..+.. ..+.+|+++. .+++
T Consensus 306 ~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~ 373 (417)
T 3n0l_A 306 VSD-G-----------TDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEK 373 (417)
T ss_dssp GGG-S-----------CSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHH
T ss_pred ccC-C-----------CCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHH
Confidence 321 1 122378888742 567888999999999997654321 2467999975 2579
Q ss_pred HHHHHHHHHHhhh
Q 012785 443 NYNLFVQRLSKIL 455 (456)
Q Consensus 443 ~i~~~l~~L~~~l 455 (456)
++++++++|++++
T Consensus 374 ~i~~~~~~l~~~l 386 (417)
T 3n0l_A 374 EMEIVSNYIADIL 386 (417)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999876
No 183
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.91 E-value=1.1e-22 Score=205.52 Aligned_cols=284 Identities=15% Similarity=0.097 Sum_probs=189.0
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh----hhhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS----ITDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~----~~~~~g~~~~~ 217 (456)
..+|++.++++++. + ..++++++++++.+++.+++++|| +|++++|+|..+.. .++..|++++.
T Consensus 84 ~~~le~~lA~l~g~-------~-~~v~~~sG~~Ai~~al~al~~~Gd----~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~ 151 (430)
T 3ri6_A 84 VEDLEQRLKNLTGA-------L-GVLALGSGMAAISTAILTLARAGD----SVVTTDRLFGHTLSLFQKTLPSFGIEVRF 151 (430)
T ss_dssp HHHHHHHHHHHHTC-------S-EEEEESCHHHHHHHHHHHHCCTTC----EEEEETTCCHHHHHHHHTHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHCC-------C-cEEEECCHHHHHHHHHHHHhCCCC----EEEEcCCCchhHHHHHHHHHHHcCCEEEE
Confidence 37889999988863 3 344444556999999999999999 99999999998877 66778999988
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCcccc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~ 288 (456)
++. |.+.++. .++++|++++|+||||.+++ ++|+++|+++|+|++|..+.... +...+.+++++|+||.+
T Consensus 152 v~~~d~~~l~~ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~~~-~~~~g~div~~S~sK~l 230 (430)
T 3ri6_A 152 VDVMDSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLE-AKRLGVDIEVLSSTKFI 230 (430)
T ss_dssp ECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTTCC-GGGGTCSEEEEECCCEE
T ss_pred eCCCCHHHHHHhhCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCC-hHHcCCEEEEECCcccc
Confidence 876 4555543 36799999999999999987 48999999999999998543311 12234589999999999
Q ss_pred CCCCceEEEEEE--eCHHH------------------HHHHHH-HHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcch
Q 012785 289 GHAGTRIGWALV--KDMEV------------------AKKMTK-YIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDE 347 (456)
Q Consensus 289 g~~G~RiG~l~~--~~~~~------------------~~~l~~-~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~ 347 (456)
+.+|..+|.+++ .+..+ +++++. .........+++....+...++
T Consensus 231 ~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l~~l~-------------- 296 (430)
T 3ri6_A 231 SGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNAYLQSLGLE-------------- 296 (430)
T ss_dssp ETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHH--------------
T ss_pred cCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh--------------
Confidence 877777776666 22111 233222 1222334455555444444343
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccc----ccccccCCCCCc-eEEeecCc--cHHHHHHHHHhCCEEe
Q 012785 348 CFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFC----TFLGRAFEPQPA-FAWLKCEQ--EIEDCESFLKGNKILT 420 (456)
Q Consensus 348 ~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~----~~~~~~~~~~~~-f~~~~~~~--~~~~~~~~l~~~gI~v 420 (456)
.+....++..++.+.+.+.|++++.+.....++.-. ...++.. ..+. .+|+.+++ ....+.+.++..++.+
T Consensus 297 -~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~-g~Gg~~lsf~l~~~~~~~~~~~~l~~~~~~~ 374 (430)
T 3ri6_A 297 -TMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQF-RYAGSILTFELESKEASYRFMDALKLIRRAT 374 (430)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHC-SSCCSEEEEECSSHHHHHHHHHHCSSSEECS
T ss_pred -hHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhC-CCCceEEEEEECCHHHHHHHHHhCCcceecC
Confidence 344455666788889999998887655322211000 0000000 1133 68999873 2344556666677778
Q ss_pred ecCCCCC----------------------CCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 421 RSGKHFG----------------------FSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 421 ~pg~~fg----------------------~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
.+|..|. ..++.||||++ .|+.+++++.|++.|+
T Consensus 375 s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG--~E~~~dl~~dl~~al~ 430 (430)
T 3ri6_A 375 NIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVG--IEEIEDLKEDILQALC 430 (430)
T ss_dssp CCSCSSCEEECTGGGC---------CGGGSCTTEEEEECC--SSCHHHHHHHHHHHHC
T ss_pred CCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec--cCCHHHHHHHHHHhhC
Confidence 8887653 24679999985 4566677777777664
No 184
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.90 E-value=1.5e-23 Score=212.69 Aligned_cols=308 Identities=14% Similarity=0.064 Sum_probs=195.2
Q ss_pred CCCCeEEecCCCCC--CC-chhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 92 GGERIINVDHGDPT--MY-EKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~p~--~~-~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
.++..||+..+.+. +. .++.+.++.. ..+..+. ...|+... ..++++.+++++. ..++|++
T Consensus 54 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~-~~~~~~~--~~~~~~~~------~~~l~~~la~~~~-------~~~~v~~ 117 (434)
T 2epj_A 54 DGARIVDLVLAYGPLILGHKHPRVLEAVE-EALARGW--LYGAPGEA------EVLLAEKILGYVK-------RGGMIRF 117 (434)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHH-HHHHTCS--CCSSCCHH------HHHHHHHHHHHHC-------TTCEEEE
T ss_pred CCCEEEEcccchhcccCCCCCHHHHHHHH-HHHHhCC--CCCCCCHH------HHHHHHHHHHhCC-------CCCEEEE
Confidence 45678999887532 21 2343443222 1122221 11222211 2455555555541 2468999
Q ss_pred ccCHHHHHHHHHHH---hcCCCCCCCcEEEEeCCCCCChhhhhh--------------hcCC------eEeeec-cCccc
Q 012785 169 GTGSTQLFQAALYA---LSSQDASEPISVVSAAPYYSSYPSITD--------------CVKS------RLYKWA-GDAKR 224 (456)
Q Consensus 169 t~G~~~al~~~~~~---l~~~gd~~~~~Vlv~~P~y~~~~~~~~--------------~~g~------~~~~~~-~d~~~ 224 (456)
|+|+++++.+++++ +. +++ +|++.+|+|+++...+. ..|+ +++.++ .|.+.
T Consensus 118 ~~sgseA~~~al~~ar~~~-~~~----~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~ 192 (434)
T 2epj_A 118 VNSGTEATMTAIRLARGYT-GRD----LILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDVEA 192 (434)
T ss_dssp ESSHHHHHHHHHHHHHHHH-CCC----EEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETTCHHH
T ss_pred eCCHHHHHHHHHHHHHHhh-CCC----eEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCCCHHH
Confidence 99999999999987 44 445 89999999998665332 1232 233443 25555
Q ss_pred ccc------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC---CCCCCcEEEecCcc
Q 012785 225 FNK------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT---YPADHDLMLFTVSK 286 (456)
Q Consensus 225 l~~------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~---~~~~~~i~i~S~SK 286 (456)
++. .++++|+++..+||||.+++ ++|+++|+++|+||+|.+. ..+-. ...+...-+.||||
T Consensus 193 le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK 271 (434)
T 2epj_A 193 LERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNIEGDIIVLGK 271 (434)
T ss_dssp HHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTTHHHHHHTCCCSEEEEEG
T ss_pred HHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcchhhHHhCCCCCeeeecc
Confidence 542 24456555444578998764 3899999999999999964 22111 00111122459999
Q ss_pred ccCCCCceEEEEEEeCHHHHHHHHHHH---hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 012785 287 STGHAGTRIGWALVKDMEVAKKMTKYI---ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQ 363 (456)
Q Consensus 287 ~~g~~G~RiG~l~~~~~~~~~~l~~~~---~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 363 (456)
.++ +|+|+||++++ +++++.+.... ...+++.+++++.++.+.|+.+.+ +...++++++++.
T Consensus 272 ~l~-~G~~~G~v~~~-~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~-------------~~~~~~~~~~~~~ 336 (434)
T 2epj_A 272 IIG-GGFPVGAVAGS-REVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEE-------------EPVYSVSREAAKA 336 (434)
T ss_dssp GGG-TTSSCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHH-------------SCHHHHHHHHHHH
T ss_pred hhc-CCcceeeeeec-HHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHh-------------cCHHHHHHHHHHH
Confidence 999 59999999997 88888776521 235678899999999998885432 1345566667777
Q ss_pred HHHHHHhc----CCccccCCCCcccccccccCCCCCceEEeecCc---------------cHHHHHHHHHhCCEEeecCC
Q 012785 364 LRMAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---------------EIEDCESFLKGNKILTRSGK 424 (456)
Q Consensus 364 l~~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---------------~~~~~~~~l~~~gI~v~pg~ 424 (456)
+.+.|+++ +.....++ .++|+|+.++. ....+.+.|.++||.+.||.
T Consensus 337 l~~~L~~~~~~~~~~~~~~~--------------~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~ 402 (434)
T 2epj_A 337 LEEAASEVLDRTGLPYTINR--------------VESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSN 402 (434)
T ss_dssp HHHHHHHHHHHHTCCEEEEE--------------ETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSST
T ss_pred HHHHHHHHHhhCCCcEEEEE--------------eeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccC
Confidence 77777653 32111122 23378888753 13557777889999999974
Q ss_pred CCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 425 HFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 425 ~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
...+|+++..+++++++++++|++++
T Consensus 403 -----~~~~~~~~~~t~e~i~~~l~~l~~~l 428 (434)
T 2epj_A 403 -----LEAVFTGLPHQGEALEIAVEGLRSSL 428 (434)
T ss_dssp -----TSCEECCTTCSHHHHHHHHHHHHHHH
T ss_pred -----CCcEEEeccCCHHHHHHHHHHHHHHH
Confidence 23578887679999999999998875
No 185
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.90 E-value=4.8e-23 Score=210.70 Aligned_cols=279 Identities=13% Similarity=0.147 Sum_probs=189.3
Q ss_pred cccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC----CCCCCCcE---EEEeCCCCC
Q 012785 130 YFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS----QDASEPIS---VVSAAPYYS 202 (456)
Q Consensus 130 ~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~----~gd~~~~~---Vlv~~P~y~ 202 (456)
.|.+..| ..+|+++++++++. ++|++|+|+++++.++++++.. +|| + |+++.|.|.
T Consensus 71 ~y~~~~~-----~~~l~~~la~~~~~--------~~v~~t~ggt~A~~~al~~~~~~~~~~Gd----~~~~viv~~~~~~ 133 (467)
T 1ax4_A 71 AYAGSRN-----YYDLKDKAKELFNY--------DYIIPAHQGRGAENILFPVLLKYKQKEGK----AKNPVFISNFHFD 133 (467)
T ss_dssp CSSSCHH-----HHHHHHHHHHHHCC--------CEEEEESSHHHHHHHHHHHHHHHHHHTTC----CSSCEEEESSCCH
T ss_pred ccccCcc-----HHHHHHHHHHHcCC--------CcEEEcCCcHHHHHHHHHHHHHhhccCCC----ccceEEEeccccc
Confidence 4655556 48999999999852 5899999999999999999988 999 8 999977767
Q ss_pred ChhhhhhhcCCeEeeec----------------cCcccccc-------CCCeEEEEcCCCCCC-cccch--------HHh
Q 012785 203 SYPSITDCVKSRLYKWA----------------GDAKRFNK-------DGPYIELVTSPNNPD-GSVRQ--------SVV 250 (456)
Q Consensus 203 ~~~~~~~~~g~~~~~~~----------------~d~~~l~~-------~~~~~i~v~~P~NPt-G~~~~--------~l~ 250 (456)
.+...+...|.+++... +|.+.++. .++++|++++||||| |.+++ ++|
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la 213 (467)
T 1ax4_A 134 TTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIA 213 (467)
T ss_dssp HHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHH
T ss_pred hhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHH
Confidence 77778888888876432 24444432 147899999999999 78766 389
Q ss_pred hhcCcEEEeeecCCC----------CCCCCCC--CC-----CCCcEEEecCccccCCC-CceEEEEEEeCH-HHHHHHHH
Q 012785 251 NRSGGILVHDLAYYW----------PQYTSIT--YP-----ADHDLMLFTVSKSTGHA-GTRIGWALVKDM-EVAKKMTK 311 (456)
Q Consensus 251 ~~~~~~iI~De~y~~----------~~~~~~~--~~-----~~~~i~i~S~SK~~g~~-G~RiG~l~~~~~-~~~~~l~~ 311 (456)
+++|+++|+|+++.. ..+.+.. .. ..-++++.|+||.+|++ | ||++.+|+ ++++++..
T Consensus 214 ~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G---g~~~~~d~~~l~~~~~~ 290 (467)
T 1ax4_A 214 KQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG---GLVAIRDNEEIFTLARQ 290 (467)
T ss_dssp HHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSC---EEEEESSCHHHHHHHHH
T ss_pred HHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccccCCCCcc---eEEEeCCHHHHHHHHHh
Confidence 999999999997432 0121211 10 11236779999999866 4 67767546 88888776
Q ss_pred HHhhc----cCc-CChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccc
Q 012785 312 YIELN----TIG-VSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTF 386 (456)
Q Consensus 312 ~~~~~----~~~-~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~ 386 (456)
..... ..+ .+...+.++...++...+ ++.++ ...++++.+.+.|++. ++.+..|.+++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---------~~~~~----~~~~~~~~l~~~L~~~-~~~~~~~~~~~--- 353 (467)
T 1ax4_A 291 RCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE---------EEYLH----YRIGQVKYLGDRLREA-GIPIQYPTGGH--- 353 (467)
T ss_dssp HHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC---------HHHHH----HHHHHHHHHHHHHHHT-TCCBCSSCCSS---
T ss_pred hccccccccccCCccchHHHHHHHHHHHhhh---------hhHHH----HHHHHHHHHHHHHHhC-CCCcccCCCce---
Confidence 54321 222 232233333334542110 12222 2336677888888773 45555666666
Q ss_pred ccccCCCCCceEEee-------cCc---cHHHHHHHH-HhCCEEeec-CCCC-CC----------CCCeEEEEec---CC
Q 012785 387 LGRAFEPQPAFAWLK-------CEQ---EIEDCESFL-KGNKILTRS-GKHF-GF----------SPKYVRISML---DR 440 (456)
Q Consensus 387 ~~~~~~~~~~f~~~~-------~~~---~~~~~~~~l-~~~gI~v~p-g~~f-g~----------~~~~iRis~~---~~ 440 (456)
++|++ ++. +...+.+.| .++||.+.| |..| +. ..+++||++. .+
T Consensus 354 ----------~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t 423 (467)
T 1ax4_A 354 ----------AVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYT 423 (467)
T ss_dssp ----------EEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSC
T ss_pred ----------EEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCC
Confidence 78888 432 245566666 899999999 6542 21 1379999997 47
Q ss_pred hhHHHHHHHHHHhhh
Q 012785 441 DENYNLFVQRLSKIL 455 (456)
Q Consensus 441 ~e~i~~~l~~L~~~l 455 (456)
++++++++++|++++
T Consensus 424 ~e~i~~~~~~l~~~~ 438 (467)
T 1ax4_A 424 NDHMDYIADALIGLK 438 (467)
T ss_dssp HHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999998875
No 186
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.2e-22 Score=209.63 Aligned_cols=277 Identities=10% Similarity=0.054 Sum_probs=199.1
Q ss_pred CHHHHHHHHHHHH-HhcCccCCCceEEEccCHHHHHHHHHHHhcC-----CC---CCCCcEEEEeCCCCCChhhhhhhcC
Q 012785 142 EPEFAKEVVRLHK-VVGNAITENHHIVVGTGSTQLFQAALYALSS-----QD---ASEPISVVSAAPYYSSYPSITDCVK 212 (456)
Q Consensus 142 ~~~lr~aia~~~~-~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~-----~g---d~~~~~Vlv~~P~y~~~~~~~~~~g 212 (456)
..++++.+++++. .+|.+.. ++++++|+|+++++.+++.++.. +| + +|+++.|+|+.+...++..|
T Consensus 105 ~~~l~~~~~~~la~~~g~~~~-~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~----~Vi~~~~~h~~~~~~~~~~G 179 (497)
T 3mc6_A 105 VRKMESEVVSMVLRMFNAPSD-TGCGTTTSGGTESLLLACLSAKMYALHHRGITEP----EIIAPVTAHAGFDKAAYYFG 179 (497)
T ss_dssp HHHHHHHHHHHHHHHTTCCTT-TCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSC----EEEEETTSCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhCCCCC-CCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCc----eEEEeCCccHHHHHHHHHcC
Confidence 3678888888874 4555432 46899999999999999999865 45 6 99999999999999999999
Q ss_pred CeEeeeccCc-------ccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC--------CCC
Q 012785 213 SRLYKWAGDA-------KRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP--------QYT 269 (456)
Q Consensus 213 ~~~~~~~~d~-------~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~--------~~~ 269 (456)
++++.++.|. +.++. .++++|++++|+||||.+.+ ++|+++|+++|+|++|.+. ++.
T Consensus 180 ~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~ 259 (497)
T 3mc6_A 180 MKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYK 259 (497)
T ss_dssp CEEEEECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCC
T ss_pred CeEEEEecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhccc
Confidence 9998776543 33433 25789999999999999976 4899999999999999731 111
Q ss_pred ---CCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCc----CC----------hHHHHHHHHH
Q 012785 270 ---SIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIG----VS----------KDSQLRAAKV 331 (456)
Q Consensus 270 ---~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~----~s----------~~~q~~a~~~ 331 (456)
++. ...+-++++.|++|.++ +|.++||++++++.+. ...........+ .. ..++.++...
T Consensus 260 ~~~~~~~~~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~ 337 (497)
T 3mc6_A 260 NLPLLDFRVPGVTSISCDTHKYGF-APKGSSVIMYRNSDLR-MHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVN 337 (497)
T ss_dssp SCCCCSTTSTTCCEEEEETTTTTC-CCSSCEEEECSSHHHH-TTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHH
T ss_pred CCccccccCCCCcEEEECchhhcC-CCCCceeEEecCHHHH-hhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHH
Confidence 121 22345789999999764 7889999999744332 221111000000 00 3446666665
Q ss_pred HHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh-cCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHH
Q 012785 332 LKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK-SGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDC 409 (456)
Q Consensus 332 L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~ 409 (456)
+. +..+++..++..++++.+.+.|++ ++++.+..+. .++++++..+. +...+
T Consensus 338 l~-------------~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~-------------~~~~v~~~~~~~~~~~l 391 (497)
T 3mc6_A 338 MG-------------ENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNP-------------RYSVISFSSKTLNIHEL 391 (497)
T ss_dssp HH-------------HHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCC-------------CSSEEEEECTTTTHHHH
T ss_pred Hh-------------HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-------------CeeEEEEeCCCCCHHHH
Confidence 55 345677888888999999999998 5656554322 12245555543 57788
Q ss_pred HHHHHhCCEEeecCCCCCCCCCeEEEEecC-ChhHHHHHHHHHHhhh
Q 012785 410 ESFLKGNKILTRSGKHFGFSPKYVRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 410 ~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
.+.|.++||.++++.. +..+|++++. +++++++++++|++++
T Consensus 392 ~~~L~~~Gi~v~~~~~----~~~~ri~~~~~t~e~i~~~~~~L~~~l 434 (497)
T 3mc6_A 392 SDRLSKKGWHFNALQK----PVALHMAFTRLSAHVVDEICDILRTTV 434 (497)
T ss_dssp HHHHHTTTCBCEECCS----SCCEEEECCTTTTCTHHHHHHHHHHHH
T ss_pred HHHHHhCCEEEecCCC----CCeEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 8999999999987542 4468999875 8899999999999875
No 187
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.90 E-value=1e-23 Score=215.82 Aligned_cols=281 Identities=10% Similarity=0.027 Sum_probs=198.1
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh----hhhhcCCeEe-
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS----ITDCVKSRLY- 216 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~----~~~~~g~~~~- 216 (456)
..++++.++++++. ++++|++|+|+++++++++.++..+++. +.+|+++.|+|+.... .++..|+++.
T Consensus 113 ~~~l~~~la~~~g~------~~~~v~~t~g~t~al~~~~~~~~~~~~~-~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~ 185 (465)
T 3e9k_A 113 DESIVGLMKDIVGA------NEKEIALMNALTVNLHLLMLSFFKPTPK-RYKILLEAKAFPSDHYAIESQLQLHGLNIEE 185 (465)
T ss_dssp THHHHGGGHHHHTC------CGGGEEECSCHHHHHHHHHHHHCCCCSS-SCEEEEETTCCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHcCC------CcCCEEEECCHHHHHHHHHHHhccccCC-CCEEEEcCCcCCchHHHHHHHHHHcCCccee
Confidence 46788888888764 4579999999999999999999877651 1169999999988444 5666787752
Q ss_pred ---e-------eccCcccccc------CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CC
Q 012785 217 ---K-------WAGDAKRFNK------DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YP 274 (456)
Q Consensus 217 ---~-------~~~d~~~l~~------~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~ 274 (456)
. +.+|.+.++. .++++|++++||||||.+++ ++|+++|+++|+|+++.... .++. ..
T Consensus 186 ~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~-~~~~~~~ 264 (465)
T 3e9k_A 186 SMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGN-VELYLHD 264 (465)
T ss_dssp HEEEECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTT-SCCCHHH
T ss_pred eeEEEecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCC-cCCchhh
Confidence 1 1234554432 36789999999999999987 48999999999999988532 2221 12
Q ss_pred CCCcEEEecCccccC-CCCceEEEEEEeCHHHHHHHHHHHh-------------------------hccCcCChHHHHHH
Q 012785 275 ADHDLMLFTVSKSTG-HAGTRIGWALVKDMEVAKKMTKYIE-------------------------LNTIGVSKDSQLRA 328 (456)
Q Consensus 275 ~~~~i~i~S~SK~~g-~~G~RiG~l~~~~~~~~~~l~~~~~-------------------------~~~~~~s~~~q~~a 328 (456)
.+.+++++|++|.++ .|+ ++|+++++ +++.+.+..... ....+.+.+...++
T Consensus 265 ~~~D~~~~s~~K~l~~gp~-~~g~l~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~ 342 (465)
T 3e9k_A 265 WGVDFACWCSYKYLNAGAG-GIAGAFIH-EKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSL 342 (465)
T ss_dssp HTCCEEEECSSSTTCCCTT-CCCEEEEC-GGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHH
T ss_pred cCCCEEEECcccccccCCC-ceEEEEEc-HHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHH
Confidence 356799999999993 344 79999996 777655432110 00114555556666
Q ss_pred HHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc----------CCccccCCCCcccccccccCCCCCceE
Q 012785 329 AKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS----------GLFSVPELPSQFCTFLGRAFEPQPAFA 398 (456)
Q Consensus 329 ~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~----------~~~~~~~~~g~~~~~~~~~~~~~~~f~ 398 (456)
.+.++.+. +..+++++++++++++++.+.|++. +++.+..|... ...++++
T Consensus 343 ~aal~~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~---------~~~g~~~ 403 (465)
T 3e9k_A 343 HASLEIFK----------QATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHV---------EERGCQL 403 (465)
T ss_dssp HHHHHHHH----------HHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSG---------GGBCSCE
T ss_pred HHHHHHHH----------HcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCH---------hhcccEE
Confidence 66665321 1237788999999999999999874 44555444310 0113478
Q ss_pred EeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEe-c--CChhHHHHHHHHHHhhhC
Q 012785 399 WLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISM-L--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 399 ~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~-~--~~~e~i~~~l~~L~~~l~ 456 (456)
|+.++.+...+.+.|.++||.++. ..++++|+++ . .++++++++++.|+++++
T Consensus 404 ~~~~~~~~~~l~~~L~~~Gi~v~~-----~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~ 459 (465)
T 3e9k_A 404 TITFSVPNKDVFQELEKRGVVCDK-----RNPNGIRVAPVPLYNSFHDVYKFTNLLTSILD 459 (465)
T ss_dssp EEEECCTTCCHHHHHHTTTEECEE-----ETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHT
T ss_pred EEEecCCHHHHHHHHHHCCEEEec-----CCCCEEEEeCcccCCCHHHHHHHHHHHHHHHH
Confidence 888875556788888899999973 2378999997 2 289999999999998864
No 188
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.90 E-value=7.4e-24 Score=215.90 Aligned_cols=266 Identities=12% Similarity=0.060 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc---C-----------CCCCCCcEEEEeCCCCCChhhhh
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS---S-----------QDASEPISVVSAAPYYSSYPSIT 208 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~---~-----------~gd~~~~~Vlv~~P~y~~~~~~~ 208 (456)
.+|++.++++++ . ...++|++|+|++++++.+++++. . +++ +|++.+|+|+++...+
T Consensus 104 ~~la~~la~~~~----~-~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~----~Vi~~~~~yhg~~~~~ 174 (449)
T 2cjg_A 104 ARFVETFARVLG----D-PALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGT----QVLHLRGAFHGRSGYT 174 (449)
T ss_dssp HHHHHHHHHHHC----C-TTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCC----EEEEETTCCCCSSTTG
T ss_pred HHHHHHHHHhcC----C-CCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCC----EEEEECCCcCCcccch
Confidence 456666666653 1 135799999999999999998653 2 167 9999999999877654
Q ss_pred hhcCC--------------eEeeecc-C--ccc-------------ccc------CCCeEEEEcCCCCCCcc-cch----
Q 012785 209 DCVKS--------------RLYKWAG-D--AKR-------------FNK------DGPYIELVTSPNNPDGS-VRQ---- 247 (456)
Q Consensus 209 ~~~g~--------------~~~~~~~-d--~~~-------------l~~------~~~~~i~v~~P~NPtG~-~~~---- 247 (456)
...+. .++.++. | .+. ++. .++++|+++.+|||||. +.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l 254 (449)
T 2cjg_A 175 LSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFF 254 (449)
T ss_dssp GGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHH
T ss_pred hhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHH
Confidence 33221 2333332 2 111 321 35567666544799995 554
Q ss_pred ----HHhhhcCcEEEeeecCCCCCCCCCCC---CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHH-----HHHHhh
Q 012785 248 ----SVVNRSGGILVHDLAYYWPQYTSITY---PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKM-----TKYIEL 315 (456)
Q Consensus 248 ----~l~~~~~~~iI~De~y~~~~~~~~~~---~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l-----~~~~~~ 315 (456)
++|+++|+++|+||+|.+..+.+... ..+...-+.||||.+ |+||++++ +++++.+ ......
T Consensus 255 ~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l-----~iG~~~~~-~~~~~~l~~~~~~~~~~~ 328 (449)
T 2cjg_A 255 AAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKT-----QVCGVMAG-RRVDEVADNVFAVPSRLN 328 (449)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGG-----SSEEEEEC-GGGGGSTTCTTTSTTSSC
T ss_pred HHHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEEEecCcc-----cEEEEEEC-HHHhhhhhhcccCCcccc
Confidence 38999999999999999654432210 001111134899987 79999997 7877752 222334
Q ss_pred ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc----CC-ccccCCCCccccccccc
Q 012785 316 NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS----GL-FSVPELPSQFCTFLGRA 390 (456)
Q Consensus 316 ~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~----~~-~~~~~~~g~~~~~~~~~ 390 (456)
.+++.++++|.++.++|+.+.+ +...++++++++.+.+.|+++ +. +...++.|
T Consensus 329 ~t~~~n~~~~~aa~aal~~~~~-------------~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g--------- 386 (449)
T 2cjg_A 329 STWGGNLTDMVRARRILEVIEA-------------EGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRG--------- 386 (449)
T ss_dssp CSSSSCHHHHHHHHHHHHHHHH-------------HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEET---------
T ss_pred cCCCCCHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeecc---------
Confidence 5788999999999999984322 234566777777888777653 32 32233333
Q ss_pred CCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 391 FEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 391 ~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
+|++++++. ....+.+.|.++||.+.|+. .+++|++++ .+++++++++++|++++
T Consensus 387 -----~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-----~~~iRi~~~~~~t~e~i~~~l~~l~~~l 445 (449)
T 2cjg_A 387 -----LMCAFSLPTTADRDELIRQLWQRAVIVLPAG-----ADTVRFRPPLTVSTAEIDAAIAAVRSAL 445 (449)
T ss_dssp -----TEEEEECSSHHHHHHHHHHHHHTTEECEEET-----TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred -----EEEEEEECChHHHHHHHHHHHHCCeEEecCC-----CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 367788864 34567777778999999962 689999654 59999999999999876
No 189
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.90 E-value=4.9e-23 Score=211.28 Aligned_cols=285 Identities=11% Similarity=0.041 Sum_probs=202.2
Q ss_pred CHHHHHHHHHHHHH-hcCccCCCceEEEccCHHHHHHHHHHHh----cCCCC-CCCcEEEEeCCCCCChhhhhhhcCCeE
Q 012785 142 EPEFAKEVVRLHKV-VGNAITENHHIVVGTGSTQLFQAALYAL----SSQDA-SEPISVVSAAPYYSSYPSITDCVKSRL 215 (456)
Q Consensus 142 ~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~~~al~~~~~~l----~~~gd-~~~~~Vlv~~P~y~~~~~~~~~~g~~~ 215 (456)
..++++++++++.. .|.. ..+++|+|+++++..++.++ ..+|| ..+.+|++++|+|+.+...++..|+++
T Consensus 105 ~~~l~~~l~~~la~~~g~~----~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~v 180 (474)
T 1wyu_B 105 ALRLMWELGEYLKALTGMD----AITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQV 180 (474)
T ss_dssp HHHHHHHHHHHHHHHHTCS----EEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHCCC----ceeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEE
Confidence 36777777777743 4432 24778899999998866554 24664 223389999999999999999999999
Q ss_pred eeeccC------cccccc---CCCeEEEEcCCCCCCcccc-h-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcE
Q 012785 216 YKWAGD------AKRFNK---DGPYIELVTSPNNPDGSVR-Q-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDL 279 (456)
Q Consensus 216 ~~~~~d------~~~l~~---~~~~~i~v~~P~NPtG~~~-~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i 279 (456)
+.++.| .+.++. .++++|++++| ||||.+. + ++|+++|+++|+|++|......... ...+.++
T Consensus 181 v~v~~~~~~~~d~~~L~~~i~~~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di 259 (474)
T 1wyu_B 181 REIPSGPEGEVDLEALKRELGPHVAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDV 259 (474)
T ss_dssp EEECBCTTSSBCHHHHHHHCSTTEEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSE
T ss_pred EEecCCCCCCcCHHHHHHhhCCCceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccCCCcccCCCcE
Confidence 887764 444432 35789999998 6899873 3 3789999999999999643221111 1124689
Q ss_pred EEecCccccCCC-C---ceEEEEEEeCHHHHHHHHH-HH------------------hhccCcCChHHHHHHHHHHHhhh
Q 012785 280 MLFTVSKSTGHA-G---TRIGWALVKDMEVAKKMTK-YI------------------ELNTIGVSKDSQLRAAKVLKVVS 336 (456)
Q Consensus 280 ~i~S~SK~~g~~-G---~RiG~l~~~~~~~~~~l~~-~~------------------~~~~~~~s~~~q~~a~~~L~~~~ 336 (456)
++.|++|+|+.| | .|+||++++ +++++.+.. .. ...+.+.+.+.+.++...+..+
T Consensus 260 ~~~s~~K~~~~p~g~gG~~~G~~~~~-~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~- 337 (474)
T 1wyu_B 260 VHLNLHKTFTVPHGGGGPGSGPVGVK-AHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTL- 337 (474)
T ss_dssp EECCTTTTTCCCCTTSCCCCCCEEEC-GGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHH-
T ss_pred EEEeCccccccCCCCCCCCeEEEEEc-HHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHH-
Confidence 999999999876 4 599999997 777665541 00 0112346777888888877632
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecC--ccHHHHHHHHH
Q 012785 337 DSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE--QEIEDCESFLK 414 (456)
Q Consensus 337 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~--~~~~~~~~~l~ 414 (456)
+ .+.+++..+.+.++++++.+.|++. ++.+..+.+.+ +..|+.++ .+...+.+.|.
T Consensus 338 -g--------~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~L~ 395 (474)
T 1wyu_B 338 -G--------LEGLKKAAALAVLNARYLKELLKEK-GYRVPYDGPSM------------HEFVAQPPEGFRALDLAKGLL 395 (474)
T ss_dssp -H--------HHHHHHHHHHHHHHHHHHHHHHHHT-TCBCSSCSSCC------------SCEEEBCSTTCCHHHHHHHHH
T ss_pred -H--------HHHHHHHHHHHHHHHHHHHHHHhhc-CcEecCCCCcc------------eEEEEEcCCCCCHHHHHHHHH
Confidence 1 4567888999999999999999986 45442222111 01566663 25667888888
Q ss_pred hCCEEeecCCCCCC-CCCeEEEEecC--ChhHHHHHHHHHHhhhC
Q 012785 415 GNKILTRSGKHFGF-SPKYVRISMLD--RDENYNLFVQRLSKILS 456 (456)
Q Consensus 415 ~~gI~v~pg~~fg~-~~~~iRis~~~--~~e~i~~~l~~L~~~l~ 456 (456)
++||.+ |+..|+. ..+++||+++. +++++++++++|+++++
T Consensus 396 ~~Gi~~-~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~ 439 (474)
T 1wyu_B 396 ELGFHP-PTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLK 439 (474)
T ss_dssp HTTCCC-CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred HCCccc-cccccccccCCEEEEEeecCCCHHHHHHHHHHHHHHHH
Confidence 889985 6666753 36899999976 88999999999998763
No 190
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.90 E-value=2.1e-22 Score=201.86 Aligned_cols=282 Identities=13% Similarity=0.070 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh-----hhcCCeEee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT-----DCVKSRLYK 217 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~-----~~~g~~~~~ 217 (456)
.+|++.++++.+. +++++++++++++.+ +..++++|| +|++++|+|+.....+ +..|.++..
T Consensus 70 ~~l~~~la~l~g~--------~~~~~~~sG~~Ai~~-~~~l~~~gd----~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~ 136 (400)
T 3nmy_A 70 FAYERCVAALEGG--------TRAFAFASGMAATST-VMELLDAGS----HVVAMDDLYGGTFRLFERVRRRTAGLDFSF 136 (400)
T ss_dssp HHHHHHHHHHHTC--------SEEEEESSHHHHHHH-HHTTSCTTC----EEEEESSCCHHHHHHHHHTHHHHHCCEEEE
T ss_pred HHHHHHHHHHhCC--------CCEEEecCHHHHHHH-HHHHcCCCC----EEEEeCCCchHHHHHHHHhhHhhcCeEEEE
Confidence 6788888887752 356666666999998 467889999 9999999999655553 335998887
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC-CCCCCCCCCCcEEEecCccc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-YTSITYPADHDLMLFTVSKS 287 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~~~~~~~~~~~i~i~S~SK~ 287 (456)
++. |.+.++. .++++|++++|+||||.+++ ++|+++|+++|+||+|..+. ..++ ..+.+++++|+||.
T Consensus 137 v~~~d~~~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~--~~g~div~~S~sK~ 214 (400)
T 3nmy_A 137 VDLTDPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPL--SLGADLVVHSATKY 214 (400)
T ss_dssp ECTTSHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCGG--GGTCSEEEEETTTT
T ss_pred ECCCCHHHHHHHhccCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChh--hcCCcEEEecCccc
Confidence 775 4455543 46799999999999999987 48999999999999997421 1222 23568999999999
Q ss_pred cCCCCceEEE--EEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 288 TGHAGTRIGW--ALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 288 ~g~~G~RiG~--l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
++.+|.++|+ +++.++++++++.........+.+++.+.++...++ .+....++..++.+.+.
T Consensus 215 l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~---------------~l~~r~~~~~~~a~~l~ 279 (400)
T 3nmy_A 215 LNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLK---------------TLPLRMRAHCENALALA 279 (400)
T ss_dssp TTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHT---------------THHHHHHHHHHHHHHHH
T ss_pred cCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHh---------------HHHHHHHHHHHHHHHHH
Confidence 9888888866 555568899999888777778888888777777665 23345566678888888
Q ss_pred HHHHhcCCccccCCCCcc----cccccccCCCCCceEEeecCccH---HHHHHHHHhCCEEeecCCCC------------
Q 012785 366 MAVQKSGLFSVPELPSQF----CTFLGRAFEPQPAFAWLKCEQEI---EDCESFLKGNKILTRSGKHF------------ 426 (456)
Q Consensus 366 ~~L~~~~~~~~~~~~g~~----~~~~~~~~~~~~~f~~~~~~~~~---~~~~~~l~~~gI~v~pg~~f------------ 426 (456)
+.|++++.+.....++.- .....+.....+.++++.++++. ..+.+.++-.++.+..|..+
T Consensus 280 ~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~ 359 (400)
T 3nmy_A 280 QWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKTELFTLAESLGGVESLVNHPAVMTHA 359 (400)
T ss_dssp HHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTT
T ss_pred HHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHHcCCcceEecCCCCCcceeeCccccccc
Confidence 999887654332111100 00000011223447889987533 33444555455555555433
Q ss_pred ----------CCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 427 ----------GFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 427 ----------g~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|..++.+|+|++. |+.+++++.|++.|+
T Consensus 360 ~~~~~~~~~~gi~~~liRlsvGl--e~~~dli~dl~~al~ 397 (400)
T 3nmy_A 360 SIPVARREQLGISDALVRLSVGI--EDLGDLRGDLERALV 397 (400)
T ss_dssp TSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHHHC
T ss_pred cCCHHHHHhcCCCcCeEEEEeCc--CCHHHHHHHHHHHHh
Confidence 1235789999964 344556666666653
No 191
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.90 E-value=5.7e-22 Score=199.93 Aligned_cols=283 Identities=13% Similarity=0.060 Sum_probs=187.1
Q ss_pred cccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhh
Q 012785 130 YFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSIT 208 (456)
Q Consensus 130 ~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~ 208 (456)
.|++..|. ..+..++++.++++++. + ++++++++++++.+++.++ ..+|| +|+++.|+|+.+...+
T Consensus 33 ~~~~~~g~-~~l~~~l~~~la~~~g~-------~-~~i~~~~gt~al~~~~~~~~~~~gd----~Vl~~~~~~~~~~~~~ 99 (418)
T 2c81_A 33 ISGYWTGE-ESMERKFAKAFADFNGV-------P-YCVPTTSGSTALMLALEALGIGEGD----EVIVPSLTWIATATAV 99 (418)
T ss_dssp TTSBCCSS-CCHHHHHHHHHHHHHTC-------S-EEEEESCHHHHHHHHHHHTTCCTTC----EEEEESSSCTHHHHHH
T ss_pred ccCcccCC-HHHHHHHHHHHHHHhCC-------C-cEEEeCCHHHHHHHHHHHcCCCCcC----EEEECCCccHhHHHHH
Confidence 36666662 00024555555555542 2 4555666689999999999 88999 9999999999999999
Q ss_pred hhcCCeEeeeccC-------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC-CCCCC
Q 012785 209 DCVKSRLYKWAGD-------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-YTSIT 272 (456)
Q Consensus 209 ~~~g~~~~~~~~d-------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~~~~~ 272 (456)
+..|++++.++.| .+.++. .++++|++ +||||...+ ++|+++|+++|+|++|.... +....
T Consensus 100 ~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~---~~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~ 176 (418)
T 2c81_A 100 LNVNALPVFVDVEADTYCIDPQLIKSAITDKTKAIIP---VHLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQR 176 (418)
T ss_dssp HHTTCEEEEECBCTTTCSBCHHHHGGGCCTTEEEECC---BCCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEE
T ss_pred HHcCCEEEEEecCCCCCCcCHHHHHHhhCCCCeEEEE---eCCcCCcccHHHHHHHHHHCCCEEEEECcccccCccCCEe
Confidence 9999999877654 333433 25677765 468998755 38899999999999998653 22111
Q ss_pred CCCCCcEEEecC--ccccCCCCceEEEEEEeCHHHHHHHHHHHhhcc------------Cc--------------CChHH
Q 012785 273 YPADHDLMLFTV--SKSTGHAGTRIGWALVKDMEVAKKMTKYIELNT------------IG--------------VSKDS 324 (456)
Q Consensus 273 ~~~~~~i~i~S~--SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~------------~~--------------~s~~~ 324 (456)
...-.++.+.|| ||.++. | |+||++++++++++++........ +. .+. .
T Consensus 177 ~~~~~~~~~~s~s~~K~~~~-g-~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~ 253 (418)
T 2c81_A 177 AGTIGDIGAFSCQQGKVLTA-G-EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSE-F 253 (418)
T ss_dssp TTSSSSEEEEECCTTSSSCS-S-SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCH-H
T ss_pred cccccceEEEeccCCcccCC-C-CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCH-H
Confidence 111124888888 999995 8 999999965888888877643211 11 111 1
Q ss_pred HHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcccc-CCCC-cccccccccCCCCCceEE-ee
Q 012785 325 QLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVP-ELPS-QFCTFLGRAFEPQPAFAW-LK 401 (456)
Q Consensus 325 q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~g-~~~~~~~~~~~~~~~f~~-~~ 401 (456)
+.+. .+.. .+.++...++.++.++.+.+.|++++++.+. .+.+ +...+ +++ +.
T Consensus 254 ~aa~--~~~~------------l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~----------~~~~~~ 309 (418)
T 2c81_A 254 QSAI--LLDQ------------LQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTY----------YGYVFR 309 (418)
T ss_dssp HHHH--HHHH------------HTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCC----------SEEEEE
T ss_pred HHHH--HHHH------------HHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCccccc----------EEEEEE
Confidence 1111 1111 1234556666777788888899887656665 3444 33111 122 55
Q ss_pred cCc------cHHHHHHHHHhC-CEE---eecCCCC----------------------------CCC-------CCeEEEE
Q 012785 402 CEQ------EIEDCESFLKGN-KIL---TRSGKHF----------------------------GFS-------PKYVRIS 436 (456)
Q Consensus 402 ~~~------~~~~~~~~l~~~-gI~---v~pg~~f----------------------------g~~-------~~~iRis 436 (456)
+++ +.+.+.+.|.++ ||. +++|..- +.- .+.|||+
T Consensus 310 ~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~ 389 (418)
T 2c81_A 310 FDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIH 389 (418)
T ss_dssp ECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEE
T ss_pred EccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEec
Confidence 652 566788888887 999 8887511 000 1589999
Q ss_pred ec--C-ChhHHHHHHHHHHhhh
Q 012785 437 ML--D-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 437 ~~--~-~~e~i~~~l~~L~~~l 455 (456)
+. . ++|+++.+++.|++++
T Consensus 390 ~~~~~gt~edi~~~~~~l~~~~ 411 (418)
T 2c81_A 390 HAILLAEPSHLSLLVDAVAELA 411 (418)
T ss_dssp GGGGGSCHHHHHHHHHHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHHHHH
Confidence 86 3 8899999999998875
No 192
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.89 E-value=1.7e-21 Score=196.34 Aligned_cols=257 Identities=13% Similarity=0.076 Sum_probs=170.5
Q ss_pred EEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC---hhhhhhhcCC--eEeeecc-------Ccccccc----CC
Q 012785 166 IVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS---YPSITDCVKS--RLYKWAG-------DAKRFNK----DG 229 (456)
Q Consensus 166 I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~---~~~~~~~~g~--~~~~~~~-------d~~~l~~----~~ 229 (456)
.++++|+++++..++.++.++|| +|++++|+|+. +.......|. +.+.++. |.+.++. .+
T Consensus 97 ~v~~~~Gs~a~~~al~~~~~~gd----~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~ 172 (425)
T 3ecd_A 97 NVQPHSGAQANGAVMLALAKPGD----TVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHK 172 (425)
T ss_dssp ECCCSSHHHHHHHHHHHHCCTTC----EEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHC
T ss_pred eeecCchHHHHHHHHHHccCCCC----EEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcC
Confidence 34588888999999999999999 99999999988 2222223444 4444433 4444432 36
Q ss_pred CeEEEEcCCCCCCcccchH---HhhhcCcEEEeeecCCC-----CC-CCCCCCCCCCcEEEecCccccCCCCceEEEEEE
Q 012785 230 PYIELVTSPNNPDGSVRQS---VVNRSGGILVHDLAYYW-----PQ-YTSITYPADHDLMLFTVSKSTGHAGTRIGWALV 300 (456)
Q Consensus 230 ~~~i~v~~P~NPtG~~~~~---l~~~~~~~iI~De~y~~-----~~-~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~ 300 (456)
+++|++++|+||+-..+.+ +|+++|+++|+||+|+. .. ...+ ...+++++|+||.+ +|.|+||+++
T Consensus 173 ~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~---~~~di~~~s~sK~l--~g~~~g~~~~ 247 (425)
T 3ecd_A 173 PSLIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPV---EHAHVVTSTTHKTL--RGPRGGFVLT 247 (425)
T ss_dssp CSEEEEECSCCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGG---GTCSEEEEESSGGG--CCCSCEEEEE
T ss_pred CcEEEEccccCCCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCch---hcCcEEEecCCccc--CCCCcEEEEe
Confidence 7899999999998766664 78999999999999641 11 1111 12459999999987 6789999999
Q ss_pred eCHHHHHHHHHHHhhccC-cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCC
Q 012785 301 KDMEVAKKMTKYIELNTI-GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPEL 379 (456)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~-~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 379 (456)
+++.+.+.+......... +.+...+.++...+... .+++++..+++++++++.+.+.|++.+ +.+..+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~----------~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~ 316 (425)
T 3ecd_A 248 NDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEA----------LTDDFKTYIDRVLANAQALGDVLKAGG-VDLVTG 316 (425)
T ss_dssp SCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHH----------TSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGG
T ss_pred CCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHH----------HHHhHHHHHHHHHHHHHHHHHHHHhCC-CeeccC
Confidence 767788887766443222 33333444344344311 135677888999999999999998864 444432
Q ss_pred -CCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEee----cCCCCCC-CCCeEEEEecC------ChhHH
Q 012785 380 -PSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTR----SGKHFGF-SPKYVRISMLD------RDENY 444 (456)
Q Consensus 380 -~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~----pg~~fg~-~~~~iRis~~~------~~e~i 444 (456)
.++ +++|+.++. +.+.+.+.|+++||.++ ||..+.. ..+.+|+++.. +++++
T Consensus 317 ~~~~-------------~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i 383 (425)
T 3ecd_A 317 GTDN-------------HLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEF 383 (425)
T ss_dssp SCSS-------------SEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHH
T ss_pred CCCc-------------eEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHH
Confidence 223 278888753 56778889999999999 5443322 35689999532 47999
Q ss_pred HHHHHHHHhhh
Q 012785 445 NLFVQRLSKIL 455 (456)
Q Consensus 445 ~~~l~~L~~~l 455 (456)
+++++.|++++
T Consensus 384 ~~~~~~l~~~l 394 (425)
T 3ecd_A 384 REVGRLILEVF 394 (425)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998876
No 193
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.89 E-value=6.6e-22 Score=199.02 Aligned_cols=260 Identities=16% Similarity=0.097 Sum_probs=171.4
Q ss_pred CceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh---hhhhhc--CCeEeeec------cCcccccc----
Q 012785 163 NHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP---SITDCV--KSRLYKWA------GDAKRFNK---- 227 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~---~~~~~~--g~~~~~~~------~d~~~l~~---- 227 (456)
+++|++++| ++++..++.+++++|| +|+++.|+|+.+. ...... +.+.+.++ .|.+.++.
T Consensus 93 ~~~v~~~sG-s~a~~~a~~~~~~~gd----~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~ 167 (420)
T 3gbx_A 93 YANVQPHSG-SQANFAVYTALLQPGD----TVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKE 167 (420)
T ss_dssp EEECCCSSH-HHHHHHHHHHHCCTTC----EEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHH
T ss_pred CceeEecCc-HHHHHHHHHHhcCCCC----EEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHh
Confidence 456767777 7899999999999999 9999999998743 221222 34444443 45555443
Q ss_pred CCCeEEEEcCCCCCCcccch---HHhhhcCcEEEeeecCCC----CCCCCCCCCCCCcEEEecCccccCCCCceEEEEEE
Q 012785 228 DGPYIELVTSPNNPDGSVRQ---SVVNRSGGILVHDLAYYW----PQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALV 300 (456)
Q Consensus 228 ~~~~~i~v~~P~NPtG~~~~---~l~~~~~~~iI~De~y~~----~~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~ 300 (456)
.+++++++++|+||+-..+. ++|+++|+++|+||+|.. .+..+. .....+++++|+||.++ |.|.||+++
T Consensus 168 ~~~~~v~~~~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~di~~~s~sK~~~--g~~gg~~~~ 244 (420)
T 3gbx_A 168 HKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPN-PVPHAHVVTTTTHKTLA--GPRGGLILA 244 (420)
T ss_dssp HCCSEEEECCTTCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCC-STTTSSEEEEESSGGGC--SCSCEEEEE
T ss_pred cCCeEEEEecCccCCccCHHHHHHHHHHcCCEEEEECCcchhceecccCCc-ccccCCEEEeecccCCC--CCCceEEEE
Confidence 25789999999998644444 389999999999999862 111111 12236799999999984 455699999
Q ss_pred eC--HHHHHHHHHHHhhccCcCC-hHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 012785 301 KD--MEVAKKMTKYIELNTIGVS-KDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVP 377 (456)
Q Consensus 301 ~~--~~~~~~l~~~~~~~~~~~s-~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~ 377 (456)
++ +++.+.+.........+.+ ...+.++...+... .+++++..+++++++++.+.+.|++.+ +.+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~----------~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~ 313 (420)
T 3gbx_A 245 KGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEA----------MEPEFKVYQQQVAKNAKAMVEVFLNRG-YKVV 313 (420)
T ss_dssp SSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHT----------TSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEG
T ss_pred cCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHH----------HhHhHHHHHHHHHHHHHHHHHHHHhcC-Ceec
Confidence 73 2788877765443333333 33343434344321 135678889999999999999998854 4443
Q ss_pred CCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeec-------CCCCCCCCCeEEEEec------CCh
Q 012785 378 ELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRS-------GKHFGFSPKYVRISML------DRD 441 (456)
Q Consensus 378 ~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~p-------g~~fg~~~~~iRis~~------~~~ 441 (456)
.+. +.++++|+.++. +.+.+.+.|+++||.+.| |..|+ ++.+||++. .++
T Consensus 314 ~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~--~~~iRi~~~~~~~~~~~~ 379 (420)
T 3gbx_A 314 SGG------------TENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFV--TSGIRIGSPAVTRRGFKE 379 (420)
T ss_dssp GGS------------CSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCSSCTTT--CSEEEEECHHHHHTTCCH
T ss_pred cCC------------CCCeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCCccccCC--CcceEEecchhcccCCCH
Confidence 321 122378888753 467788889999999999 44343 456999985 247
Q ss_pred hHHHHHHHHHHhhh
Q 012785 442 ENYNLFVQRLSKIL 455 (456)
Q Consensus 442 e~i~~~l~~L~~~l 455 (456)
++++++++.|++++
T Consensus 380 ~~i~~~~~~l~~~l 393 (420)
T 3gbx_A 380 AEVKELAGWMCDVL 393 (420)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999998875
No 194
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.89 E-value=3.1e-21 Score=198.19 Aligned_cols=277 Identities=12% Similarity=0.108 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHH-HhcCccCC-CceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh--------hhhhcC
Q 012785 143 PEFAKEVVRLHK-VVGNAITE-NHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS--------ITDCVK 212 (456)
Q Consensus 143 ~~lr~aia~~~~-~~g~~~~~-~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~--------~~~~~g 212 (456)
.++++.+.+++. .+|....+ ..+|++++|+ +++.+++.+++++|| +|++++|+|..+.. .+...|
T Consensus 89 ~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~an~~~~~all~pGD----~Vl~~~~~~~~~~~~~~~~~~~~v~~~G 163 (483)
T 1rv3_A 89 DELETLCQKRALQAYGLDPQCWGVNVQPYSGS-PANFAVYTALVEPHG----RIMGLDLPDGGHLTHGFMTDKKKISATS 163 (483)
T ss_dssp HHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-HHHHHHHHHHTCTTC----EEEEECGGGTCCGGGCCBCSSCBCSHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccCceEEEECCcH-HHHHHHHHHhcCCCC----EEEEecCccCcCcchhhhhcccCccccc
Confidence 567766666664 34544211 0358899999 888888999999999 99999999988764 234444
Q ss_pred --CeEeeec-------cCcccccc----CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCC------CCC
Q 012785 213 --SRLYKWA-------GDAKRFNK----DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYW------PQY 268 (456)
Q Consensus 213 --~~~~~~~-------~d~~~l~~----~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~------~~~ 268 (456)
.+.++++ +|.+.++. .++++|++ +++||+ .+++ ++|+++|+++|+|++|.. ...
T Consensus 164 ~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~ 241 (483)
T 1rv3_A 164 IFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVP 241 (483)
T ss_dssp HHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSC
T ss_pred ceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCC
Confidence 5555553 34444432 36889988 889988 6655 489999999999999872 111
Q ss_pred CCCCCCCCCcEEEecCccccCCCCceEEEEEEeCH--------------HHHHHHHHHHhhccCcC-ChHHHHHHHHHHH
Q 012785 269 TSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDM--------------EVAKKMTKYIELNTIGV-SKDSQLRAAKVLK 333 (456)
Q Consensus 269 ~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~--------------~~~~~l~~~~~~~~~~~-s~~~q~~a~~~L~ 333 (456)
.++. ..+++++|++|++ .|.|.||++++++ ++.+.+.........+. +.....+...+++
T Consensus 242 ~p~~---~~div~~s~~K~l--~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~ 316 (483)
T 1rv3_A 242 SPFE---HCHVVTTTTHKTL--RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALK 316 (483)
T ss_dssp CGGG---TCSEEEEESSGGG--CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHH
T ss_pred CCCC---CCcEEEecCcccC--CCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHH
Confidence 2221 3569999999986 6789999999843 24444443322111333 3333444445565
Q ss_pred hhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC-CcccccccccCCCCCceEEeecCc---cHHHH
Q 012785 334 VVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELP-SQFCTFLGRAFEPQPAFAWLKCEQ---EIEDC 409 (456)
Q Consensus 334 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~ 409 (456)
... +..++..+++++++++.+.+.|.+.+ +.+..+. +.+ ++|+.++. +.+.+
T Consensus 317 ~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~-------------~~~v~~~~~g~~~~~~ 372 (483)
T 1rv3_A 317 QAM----------TPEFKEYQRQVVANCRALSAALVELG-YKIVTGGSDNH-------------LILVDLRSKGTDGGRA 372 (483)
T ss_dssp HHT----------SHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSS-------------EEEEEGGGGTCCHHHH
T ss_pred HHh----------ChhHHHHHHHHHHHHHHHHHHHHhcC-CEeccCCCCCc-------------eEEEeccCCCCCHHHH
Confidence 321 23567888899999999999999874 5554432 122 67888742 56778
Q ss_pred HHHHHhCCEEee----cCCCCCCCCCeEEEEecC--C----hhHHHHHHHHHHhhh
Q 012785 410 ESFLKGNKILTR----SGKHFGFSPKYVRISMLD--R----DENYNLFVQRLSKIL 455 (456)
Q Consensus 410 ~~~l~~~gI~v~----pg~~fg~~~~~iRis~~~--~----~e~i~~~l~~L~~~l 455 (456)
.+.|.++||.++ ||..+...++++||++.. + ++++++++++|++++
T Consensus 373 ~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l 428 (483)
T 1rv3_A 373 EKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGI 428 (483)
T ss_dssp HHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcEEecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHH
Confidence 889999999999 987543357899999874 4 899999999998875
No 195
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.89 E-value=2.3e-21 Score=192.05 Aligned_cols=271 Identities=12% Similarity=0.119 Sum_probs=194.5
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 220 (456)
..+|+++++++++. +++++++|+++++.+++.++ ..+|| +|+++.|+|+.+...++..|++++.++.
T Consensus 37 ~~~l~~~la~~~~~--------~~~~~~~sGt~al~~al~~~~~~~gd----~Vi~~~~~~~~~~~~~~~~G~~~~~~~~ 104 (367)
T 3nyt_A 37 VTELEDRLADFVGA--------KYCISCANGTDALQIVQMALGVGPGD----EVITPGFTYVATAETVALLGAKPVYVDI 104 (367)
T ss_dssp HHHHHHHHHHHHTC--------SEEEEESCHHHHHHHHHHHTTCCTTC----EEEEESSSCTHHHHHHHHTTCEEEEECB
T ss_pred HHHHHHHHHHHhCC--------CcEEEeCCHHHHHHHHHHHhCCCCcC----EEEECCCccHHHHHHHHHcCCEEEEEec
Confidence 48999999999963 38999999999999999999 88999 9999999999999999999999987765
Q ss_pred C-------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC-CCCCCCCCCCCcEEEecC
Q 012785 221 D-------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP-QYTSITYPADHDLMLFTV 284 (456)
Q Consensus 221 d-------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~-~~~~~~~~~~~~i~i~S~ 284 (456)
| .+.++. .++++|+ |+||||...+ ++|+++|+++|+|++|... .+.+.....-.++++.||
T Consensus 105 ~~~~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~Sf 181 (367)
T 3nyt_A 105 DPRTYNLDPQLLEAAITPRTKAII---PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLSTVACTSF 181 (367)
T ss_dssp CTTTCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTSSSSEEEEEC
T ss_pred CCccCCcCHHHHHHhcCcCCcEEE---eeCCccChhhHHHHHHHHHHcCCEEEEECccccCCeECCeeccCCCCEEEEEC
Confidence 4 334433 2556665 8899998755 4899999999999999742 222111111127999998
Q ss_pred --ccccCCCCceEEEEEEeCHHHHHHHHHHHhh------------ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHH
Q 012785 285 --SKSTGHAGTRIGWALVKDMEVAKKMTKYIEL------------NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFF 350 (456)
Q Consensus 285 --SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~------------~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l 350 (456)
+|.++.+|. .|+++++++++.++++..... .+...+.+.+.++...++ .+
T Consensus 182 ~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~---------------~~ 245 (367)
T 3nyt_A 182 FPSAPLGCYGD-GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLE---------------IF 245 (367)
T ss_dssp CTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHH---------------TH
T ss_pred CCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHH---------------HH
Confidence 899985587 899999778899888876542 245567776666666554 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCC-CCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCC----
Q 012785 351 EFTNHQMSTRWKQLRMAVQKSGLFSVPEL-PSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKH---- 425 (456)
Q Consensus 351 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~---- 425 (456)
+...++.++.++.+.+.|++.+ +.+... .+....+ .++.+.++ +.+.+.+.|+++||.++++..
T Consensus 246 ~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~---------~~~~~~~~-~~~~l~~~L~~~GI~~~~~~~~~~~ 314 (367)
T 3nyt_A 246 EEEIALRQKVAAEYDLSLKQVG-IGTPFIEVNNISVY---------AQYTVRMD-NRESVQASLKAAGVPTAVHYPIPLN 314 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-CCCCCCCTTEECCC---------SSEEEECS-SHHHHHHHHHHHTCCCBCSCSSCGG
T ss_pred HHHHHHHHHHHHHHHHHhccCC-eeccCCCCCCceee---------EEEEEEeC-CHHHHHHHHHHCCCceeccCCCccc
Confidence 4455566677778888888775 333222 2211111 12444554 567788889999999987643
Q ss_pred ----CC-C----------CCCeEEEEecC--ChhHHHHHHHHHHhh
Q 012785 426 ----FG-F----------SPKYVRISMLD--RDENYNLFVQRLSKI 454 (456)
Q Consensus 426 ----fg-~----------~~~~iRis~~~--~~e~i~~~l~~L~~~ 454 (456)
|. . ..+.+|+++.. ++++++.+++.|++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 315 KQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp GSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred cChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 11 0 13479999864 899999999999864
No 196
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.89 E-value=1.9e-21 Score=192.89 Aligned_cols=272 Identities=11% Similarity=0.102 Sum_probs=189.9
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 220 (456)
..+|+++++++++. +++++++|+++++.+++.++ .++|| +|+++.|+|+.+...++..|++++.++.
T Consensus 38 ~~~l~~~la~~~~~--------~~~i~~~sgt~al~~~l~~l~~~~gd----~Vi~~~~~~~~~~~~~~~~g~~~~~~~~ 105 (373)
T 3frk_A 38 DKKFEQEFADYCNV--------NYCIGCGNGLDALHLILKGYDIGFGD----EVIVPSNTFIATALAVSYTGAKPIFVEP 105 (373)
T ss_dssp HHHHHHHHHHHHTS--------SEEEEESCHHHHHHHHHHHTTCCTTC----EEEEETTSCTHHHHHHHHHSCEEEEECE
T ss_pred HHHHHHHHHHHhCC--------CeEEEeCCHHHHHHHHHHHcCCCCcC----EEEECCCCcHHHHHHHHHcCCEEEEEec
Confidence 48999999999963 48899999999999999999 88999 9999999999999999999999887665
Q ss_pred C-------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC-CCCCCCCCCcEEEecC
Q 012785 221 D-------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY-TSITYPADHDLMLFTV 284 (456)
Q Consensus 221 d-------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~-~~~~~~~~~~i~i~S~ 284 (456)
| .+.++. .++++++ |+||||...+ ++|+++|+++|+|++|..... .........++++.||
T Consensus 106 ~~~~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~d~~~~S~ 182 (373)
T 3frk_A 106 DIRTYNIDPSLIESAITEKTKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSLYKGMKVGSLGDAAGFSF 182 (373)
T ss_dssp ETTTTEECGGGTGGGCCTTEEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEEC
T ss_pred cccccCcCHHHHHHhcCCCCeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCEECCEeccccccEEEEeC
Confidence 4 344443 2566666 7889999866 489999999999999984222 1111111136889998
Q ss_pred c--cccCCCCceEEEEEEeCHHHHHHHHHHHhhc------------cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHH
Q 012785 285 S--KSTGHAGTRIGWALVKDMEVAKKMTKYIELN------------TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFF 350 (456)
Q Consensus 285 S--K~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~------------~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l 350 (456)
| |.++.+| +.|+++++++++.++++...... ++..+.+.+.++...++ .+
T Consensus 183 ~~~K~l~~~g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~---------------~~ 246 (373)
T 3frk_A 183 YPAKNLGSLG-DGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLK---------------YL 246 (373)
T ss_dssp CTTSSSCCSS-SCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHH---------------TH
T ss_pred cCCCccCccc-eeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHH---------------HH
Confidence 8 8876325 48999987778888887765421 22235544444333332 34
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCC-CCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCC-
Q 012785 351 EFTNHQMSTRWKQLRMAVQKSGLFSVPEL-PSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGF- 428 (456)
Q Consensus 351 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~- 428 (456)
++..++.++..+.+.+.|++++ +.+... .+....+ ..+.+..+ +.+.+.+.|+++||.++++.....
T Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~---------~~~~~~~~-~~~~l~~~L~~~gI~v~~~~~~~~~ 315 (373)
T 3frk_A 247 DKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVW---------YTFVIRSE-KRDELQKYLNNNGIGTLIHYPIPIH 315 (373)
T ss_dssp HHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCC---------SSEEEEES-SHHHHHHHHHHTTBCCBCSCSSCGG
T ss_pred HHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceee---------EEEEEEeC-CHHHHHHHHHHCCCCcccCcCCccc
Confidence 4556666677777777777766 444322 1121110 01233333 567788899999999997652110
Q ss_pred ---------------------CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 429 ---------------------SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 429 ---------------------~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
..+.+|+++.. ++++++.+++.|+++.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~ 365 (373)
T 3frk_A 316 LQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWK 365 (373)
T ss_dssp GSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC
T ss_pred cChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 01679999874 8999999999998864
No 197
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.89 E-value=3.8e-21 Score=192.43 Aligned_cols=272 Identities=13% Similarity=0.051 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD 221 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d 221 (456)
.+|+++++++++. ++|++|+|+++++++++.++ .++|| +|+++.|+|+.+...++..|++++.++.|
T Consensus 35 ~~l~~~la~~~~~--------~~v~~~~ggt~al~~~~~~l~~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~ 102 (394)
T 1o69_A 35 NRFEQSVKDYSKS--------ENALALNSATAALHLALRVAGVKQDD----IVLASSFTFIASVAPICYLKAKPVFIDCD 102 (394)
T ss_dssp HHHHHHHHHHHCC--------SEEEEESCHHHHHHHHHHHTTCCTTC----EEEEESSSCGGGTHHHHHTTCEEEEECBC
T ss_pred HHHHHHHHHHhCC--------CcEEEeCCHHHHHHHHHHHcCCCCCC----EEEECCCccHHHHHHHHHcCCEEEEEEeC
Confidence 8999999999952 58999999999999999999 88999 99999999999999999999998877654
Q ss_pred ------cccccc---C---CCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCC-CCCCCCCCCCCCCcEEEec
Q 012785 222 ------AKRFNK---D---GPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYY-WPQYTSITYPADHDLMLFT 283 (456)
Q Consensus 222 ------~~~l~~---~---~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~-~~~~~~~~~~~~~~i~i~S 283 (456)
.+.++. . ++++|++++ |||...+ ++|+++|+++|+||+|. +..+.......-..+.+.|
T Consensus 103 ~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s 179 (394)
T 1o69_A 103 ETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYS 179 (394)
T ss_dssp TTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEE
T ss_pred CCCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEE
Confidence 333432 1 578888864 8997654 38999999999999998 3222221100101366777
Q ss_pred CccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCc--------------CChHHHHHHHHHHHhhhCCCCCCCCcchhH
Q 012785 284 VSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIG--------------VSKDSQLRAAKVLKVVSDSCKPSGSEDECF 349 (456)
Q Consensus 284 ~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~--------------~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~ 349 (456)
|||..+++|.|+||++++++++++++.........+ .+++...++...+ ++
T Consensus 180 ~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l---------------~~ 244 (394)
T 1o69_A 180 YNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQM---------------EV 244 (394)
T ss_dssp CCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHH---------------TT
T ss_pred EeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHH---------------HH
Confidence 755555567899999996588998888764322111 2333333322222 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCc--eEEeecCc-----------------------
Q 012785 350 FEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPA--FAWLKCEQ----------------------- 404 (456)
Q Consensus 350 l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~--f~~~~~~~----------------------- 404 (456)
+++..++++++++.+.+.|++. +.+..+.... .++ .+++.++.
T Consensus 245 l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~----------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (394)
T 1o69_A 245 LEQRVLKKREIYEWYKEFLGEY--FSFLDELENS----------RSNRWLSTALINFDKNELNACQKDINISQKNITLHP 312 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT--EECCCCCTTE----------ECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHhccc--ccccCCCCCC----------cceeEEEEEEecchhhcccccccccccccccccccc
Confidence 5567788888899999999875 3333221000 011 25666652
Q ss_pred cHHHHHHHHHhCCEEeecCCCC---CC--CC--------------CeEEEEec--CChhHHHHHHHHHHhhhC
Q 012785 405 EIEDCESFLKGNKILTRSGKHF---GF--SP--------------KYVRISML--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 405 ~~~~~~~~l~~~gI~v~pg~~f---g~--~~--------------~~iRis~~--~~~e~i~~~l~~L~~~l~ 456 (456)
+.+.+.+.|.++||.+++|... .. .. ..+|+... .++|+++.+++.|+++++
T Consensus 313 ~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~ 385 (394)
T 1o69_A 313 KISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIK 385 (394)
T ss_dssp HHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHh
Confidence 4567888889999999998422 00 00 23444433 289999999999998763
No 198
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.88 E-value=1.5e-20 Score=191.25 Aligned_cols=257 Identities=14% Similarity=0.059 Sum_probs=174.9
Q ss_pred ccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh-hh--hhh--cCCeEeeec-------cCcccccc----CCCeE
Q 012785 169 GTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP-SI--TDC--VKSRLYKWA-------GDAKRFNK----DGPYI 232 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~-~~--~~~--~g~~~~~~~-------~d~~~l~~----~~~~~ 232 (456)
++|+++++..++.+++++|| +|++++|+|+.+. .. ... .+.+.+.++ +|.+.++. .++++
T Consensus 113 ~~sGs~a~~~a~~~~~~~Gd----~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~ 188 (447)
T 3h7f_A 113 PHSGAQANAAVLHALMSPGE----RLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKV 188 (447)
T ss_dssp CSSHHHHHHHHHHHHCCTTC----EEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSE
T ss_pred eCCHHHHHHHHHHHhcCCCC----EEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhcCCeE
Confidence 77778999999999999999 9999999998832 21 122 234555544 34444432 26789
Q ss_pred EEEcCCCCCCcccchH---HhhhcCcEEEeeecCCC----CCCCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHH
Q 012785 233 ELVTSPNNPDGSVRQS---VVNRSGGILVHDLAYYW----PQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEV 305 (456)
Q Consensus 233 i~v~~P~NPtG~~~~~---l~~~~~~~iI~De~y~~----~~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~ 305 (456)
+++++|+||++..+.+ +|+++|+++|+||+|+. .+..+.. ....+++++|+||++ +|+|.||++++ +++
T Consensus 189 i~~~~~~~~~~~~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~-~~~~di~~~s~sK~l--~G~~gG~i~~~-~~~ 264 (447)
T 3h7f_A 189 IIAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSP-VPHADVVSTTVHKTL--GGGRSGLIVGK-QQY 264 (447)
T ss_dssp EEEECSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS-TTTCSEEEEESSGGG--CCCSCEEEEEC-GGG
T ss_pred EEEcCCCCCCccCHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCC-CCCCcEEEecCCcCC--CCCCeEEEEEC-HHH
Confidence 9999999999986664 88999999999999752 1111111 123468999999987 47899999996 888
Q ss_pred HHHHHHHHhhccCcCC-hHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc----CCccccCCC
Q 012785 306 AKKMTKYIELNTIGVS-KDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS----GLFSVPELP 380 (456)
Q Consensus 306 ~~~l~~~~~~~~~~~s-~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~ 380 (456)
++.+.........+.+ ...+.++...+... .++.++..++++.++++.+.+.|++. +++.+..+.
T Consensus 265 ~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~----------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~ 334 (447)
T 3h7f_A 265 AKAINSAVFPGQQGGPLMHVIAGKAVALKIA----------ATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGG 334 (447)
T ss_dssp HHHHHHHHTTTTCSSCCHHHHHHHHHHHHHT----------TSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGS
T ss_pred HHHHhhhcCCcccCCccHHHHHHHHHHHHHh----------hCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCC
Confidence 8888776543344433 33344444445421 13356788889999999999999876 123333210
Q ss_pred CcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEee----cCCCCC-CCCCeEEEEec------CChhHHHH
Q 012785 381 SQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTR----SGKHFG-FSPKYVRISML------DRDENYNL 446 (456)
Q Consensus 381 g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~----pg~~fg-~~~~~iRis~~------~~~e~i~~ 446 (456)
+.++++|+++.. +.+.+.+.|+++||.++ |+..++ ..++++||+.. .+++++++
T Consensus 335 ------------~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~ 402 (447)
T 3h7f_A 335 ------------TDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTE 402 (447)
T ss_dssp ------------CSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHH
T ss_pred ------------CCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHH
Confidence 122378888743 56778888999999999 664332 24678999964 36899999
Q ss_pred HHHHHHhhh
Q 012785 447 FVQRLSKIL 455 (456)
Q Consensus 447 ~l~~L~~~l 455 (456)
+++.|++++
T Consensus 403 ~~~~l~~~l 411 (447)
T 3h7f_A 403 VADIIATAL 411 (447)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998876
No 199
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.87 E-value=1.5e-21 Score=197.18 Aligned_cols=284 Identities=16% Similarity=0.110 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh----hhcCCeEeee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT----DCVKSRLYKW 218 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~----~~~g~~~~~~ 218 (456)
.+|+++++++++. ++.|++++| ++++..++.++.++|| +|+++.|+|+.+...+ +..|++++.+
T Consensus 61 ~~l~~~la~~~g~-------~~~v~~~sG-t~A~~~~l~~~~~~gd----~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (421)
T 2ctz_A 61 DVLEKRLAALEGG-------KAALATASG-HAAQFLALTTLAQAGD----NIVSTPNLYGGTFNQFKVTLKRLGIEVRFT 128 (421)
T ss_dssp HHHHHHHHHHHTC-------SEEEEESSH-HHHHHHHHHHHCCTTC----EEEECSCCCHHHHHHHHTHHHHTTCEEEEC
T ss_pred HHHHHHHHHHhCC-------CceEEecCH-HHHHHHHHHHHhCCCC----EEEEeCCCchHHHHHHHHHHHHcCCEEEEE
Confidence 7899999999863 245666665 9999999999999999 9999999999877765 6789998888
Q ss_pred -cc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecC-CCCCCCCCCCCCCCcEEEecCccc
Q 012785 219 -AG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAY-YWPQYTSITYPADHDLMLFTVSKS 287 (456)
Q Consensus 219 -~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y-~~~~~~~~~~~~~~~i~i~S~SK~ 287 (456)
+. |.+.++. .++++|++++|+||||.+.+ ++|+++|+++|+|++| ... +...+...+.+++++|+||.
T Consensus 129 ~~~~d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g-~~~~~~~~~~Di~~~s~~K~ 207 (421)
T 2ctz_A 129 SREERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGG-YLLRPLAWGAALVTHSLTKW 207 (421)
T ss_dssp CTTCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGG-TSCCGGGGTCSEEEEETTTT
T ss_pred CCCCCHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccc-ccCCccccCCeEEEECCccc
Confidence 65 4455542 36799999999999999987 4899999999999999 532 21111123568999999999
Q ss_pred cCCCCceEEEEEEeC--HHH----HHHHHH----------------------H----HhhccCcCChHHHHHHHHHHHhh
Q 012785 288 TGHAGTRIGWALVKD--MEV----AKKMTK----------------------Y----IELNTIGVSKDSQLRAAKVLKVV 335 (456)
Q Consensus 288 ~g~~G~RiG~l~~~~--~~~----~~~l~~----------------------~----~~~~~~~~s~~~q~~a~~~L~~~ 335 (456)
++.+|.|+|++++.+ +++ .+.+.. . ........+++...++...++
T Consensus 208 l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~-- 285 (421)
T 2ctz_A 208 VGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGME-- 285 (421)
T ss_dssp TTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHT--
T ss_pred ccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcc--
Confidence 998999999998852 111 112211 0 011223456655555544444
Q ss_pred hCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccc----ccccccC-CCCCceEEeecCccHHHHH
Q 012785 336 SDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFC----TFLGRAF-EPQPAFAWLKCEQEIEDCE 410 (456)
Q Consensus 336 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~----~~~~~~~-~~~~~f~~~~~~~~~~~~~ 410 (456)
.+....++..++.+.+.+.|++++.+.....++.-. ....+.. ...+..+.+.+++..+...
T Consensus 286 -------------~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~~~~~~~ 352 (421)
T 2ctz_A 286 -------------TLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAK 352 (421)
T ss_dssp -------------THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHH
T ss_pred -------------hHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCCCHHHHH
Confidence 233344555578888999999887655432111000 0000000 1233456667754323333
Q ss_pred HH---HHhCCEEeecCCCC----------------------CCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 411 SF---LKGNKILTRSGKHF----------------------GFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 411 ~~---l~~~gI~v~pg~~f----------------------g~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
.. ++..++.++.|... |..++.||+|++ .|+++++++.|++.++
T Consensus 353 ~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g--~e~~~~li~~l~~al~ 421 (421)
T 2ctz_A 353 RFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVG--LEHVEDLKAELKEALA 421 (421)
T ss_dssp HHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECC--SSCHHHHHHHHHHHTC
T ss_pred HHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeC--CCCHHHHHHHHHHHhC
Confidence 33 44455566665321 123589999984 4688899999988774
No 200
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.79 E-value=5.1e-24 Score=216.52 Aligned_cols=267 Identities=13% Similarity=0.060 Sum_probs=180.6
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc--CCCCCCCcEEEEeCCCCCChhhhhh----hcCC--
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS--SQDASEPISVVSAAPYYSSYPSITD----CVKS-- 213 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~--~~gd~~~~~Vlv~~P~y~~~~~~~~----~~g~-- 213 (456)
..+|.+.|++++.. .+.+++++++++|+..+++.+. ..++ +|++.+++|+++...+. ..|+
T Consensus 142 ~~~Lae~L~~~~p~-------~~~v~~~nSGseA~~~Aik~ar~~tgr~----~ii~~~~~yHG~~~~~~sg~~~~g~~~ 210 (465)
T 2yky_A 142 EALFAEAVCDRFPS-------IDLVRFTNSGTEANLMALATATAITGRK----TVLAFDGGYHGGLLNFASGHAPTNAPY 210 (465)
Confidence 47888888888741 3589999999999999998763 3446 89999999998776544 1233
Q ss_pred eEeeec-cCcccccc------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCC-C-CCC
Q 012785 214 RLYKWA-GDAKRFNK------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSI-T-YPA 275 (456)
Q Consensus 214 ~~~~~~-~d~~~l~~------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~-~-~~~ 275 (456)
..+.++ .|.+.++. .++++|+++..+|+||.+.+ ++|+++|+++|+||+|. ...... . ...
T Consensus 211 ~~~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~ 289 (465)
T 2yky_A 211 HVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEML 289 (465)
Confidence 222222 25555543 34567776544667997654 38999999999999999 421111 1 112
Q ss_pred CCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHH-----HHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHH
Q 012785 276 DHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTK-----YIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFF 350 (456)
Q Consensus 276 ~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~-----~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l 350 (456)
+...-+.||||.+| .|+|+||++++ +++++.+.. .....+++.++++|.++.+.|+.+.+.
T Consensus 290 gv~pDi~t~sK~lg-~G~piG~v~~~-~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~------------ 355 (465)
T 2yky_A 290 GISADLTTLGKYIG-GGMSFGAFGGR-RDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTR------------ 355 (465)
Confidence 22334669999999 69999999997 889998876 234568899999999999988854332
Q ss_pred HHHHHHHHHHHHHHHHHHHhc----CCccccCCCCcccccccccCCCCCceEEeecCc------------c---HHHHHH
Q 012785 351 EFTNHQMSTRWKQLRMAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ------------E---IEDCES 411 (456)
Q Consensus 351 ~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~------------~---~~~~~~ 411 (456)
...++++++.+.+.+.|++. +.....+..| +++|+.+.+ + ...+.+
T Consensus 356 -~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G--------------~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~ 420 (465)
T 2yky_A 356 -QAASDLSASGDRFRANLNRIAVENQAPLQFTGLG--------------SLGTIHFSRAPIRSAGDVRAADQQLKELFFF 420 (465)
Confidence 23445555555555555543 2111122223 356666532 1 345667
Q ss_pred HHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 412 FLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 412 ~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
.+.++||++.|+. |+. +++..+++++++++++|+++++
T Consensus 421 ~ll~~GV~v~p~~-~~~------~s~~~t~edid~~l~~l~~~l~ 458 (465)
T 2yky_A 421 HMLRKGIYLAPRG-MYA------LSLEIADAGRDAFAEALADFIG 458 (465)
Confidence 7889999999975 321 7776799999999999988763
No 201
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.87 E-value=8.6e-21 Score=188.76 Aligned_cols=307 Identities=13% Similarity=0.077 Sum_probs=205.9
Q ss_pred ecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHH-HHHHHHhcCccCCCceEEEccCHHHHHH
Q 012785 99 VDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEV-VRLHKVVGNAITENHHIVVGTGSTQLFQ 177 (456)
Q Consensus 99 l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~ai-a~~~~~~g~~~~~~~~I~~t~G~~~al~ 177 (456)
+..+.|++++++.+.+... .++.+++. ..|.+ . ..+|++++ |++++. .+++++++|+++++.
T Consensus 5 i~~~~p~~~~~~~i~~a~~-~~~~~~~~--~~~~~-~------~~~l~~~~~a~~~g~-------~~~~v~~~sgt~al~ 67 (377)
T 3ju7_A 5 IPFLRASTVPVIEYLDELK-EIDASHIY--TNYGP-I------NQRFEQTIMSGFFQN-------RGAVTTVANATLGLM 67 (377)
T ss_dssp BCSCCCCCCCGGGGHHHHH-HHHHHTCC--SSSCH-H------HHHHHHHHHHHTSTT-------CSEEEEESCHHHHHH
T ss_pred eeccCCCCCCcHHHHHHHH-HHHHcCCc--ccCCH-H------HHHHHHHHHHHHhCC-------CCeEEEeCCHHHHHH
Confidence 4466899887765544321 22334431 11222 2 37999999 999862 357889999999999
Q ss_pred HHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC-------cccccc----CC--CeEEEEcCCCCCCc
Q 012785 178 AALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD-------AKRFNK----DG--PYIELVTSPNNPDG 243 (456)
Q Consensus 178 ~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d-------~~~l~~----~~--~~~i~v~~P~NPtG 243 (456)
+++.++ .++|| +|+++.|+|+.+...+...|++++.+++| .+.++. .+ +++|+ |+||+|
T Consensus 68 ~al~~l~~~~Gd----~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G 140 (377)
T 3ju7_A 68 AAIQLKKRKKGK----YALMPSFTFPATPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVV---PYATFG 140 (377)
T ss_dssp HHHHHHSCTTCC----EEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGG
T ss_pred HHHHHcCCCCcC----EEEECCCCcHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEE---EECCCC
Confidence 999998 89999 99999999999999999999998877654 333332 24 67765 788999
Q ss_pred ccch-----HHhhhcCcEEEeeecCCCCCC-CCCCC-CCCCcEEEecC--ccccCCCCceEEEEEEeCHHHHHHHHHHHh
Q 012785 244 SVRQ-----SVVNRSGGILVHDLAYYWPQY-TSITY-PADHDLMLFTV--SKSTGHAGTRIGWALVKDMEVAKKMTKYIE 314 (456)
Q Consensus 244 ~~~~-----~l~~~~~~~iI~De~y~~~~~-~~~~~-~~~~~i~i~S~--SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~ 314 (456)
...+ ++|+ +|+++|+|++|..... ..... ..-.++.+.|| +|.++ +| +.|++++++++++++++..+.
T Consensus 141 ~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~~~S~~~~K~l~-~g-~gG~~~~~~~~l~~~~~~~~~ 217 (377)
T 3ju7_A 141 SWMNLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMIIYSFHATKPFG-IG-EGGLIYSKNEEDIQRIKRMGN 217 (377)
T ss_dssp BCCCCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSEEEEECBTTSSSC-CB-SCEEEEESCHHHHHHHHHHTB
T ss_pred CccCHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcEEEEECCCCCcCC-CC-CcEEEEECCHHHHHHHHHHHh
Confidence 9865 4889 9999999999974321 11111 11124666666 59887 45 789999988999999888764
Q ss_pred hc------------cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcccc-CCCC
Q 012785 315 LN------------TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVP-ELPS 381 (456)
Q Consensus 315 ~~------------~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~g 381 (456)
.. ..+.+.+.+.++...++ .++...++.+++++.+.+.|++++.+... .+..
T Consensus 218 ~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~---------------~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~ 282 (377)
T 3ju7_A 218 FGFDTNRECTMMGFNCKMSEYAAAIGIATMK---------------KWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQK 282 (377)
T ss_dssp TTBCTTSCBCSSCCBCCCCHHHHHHHHHHHH---------------THHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCC
T ss_pred cCCCCCCceeeccccCCCCHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHhcCCCCccccccCCC
Confidence 21 34566666555555554 24445556667777778888877643211 1222
Q ss_pred cccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCC--C------CC------------CCCeEEEEecC
Q 012785 382 QFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKH--F------GF------------SPKYVRISMLD 439 (456)
Q Consensus 382 ~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~--f------g~------------~~~~iRis~~~ 439 (456)
+.. ....|+.+.+++ +.+.+.+.|+++||.++.+.. + .. ..+.+||++..
T Consensus 283 ~~~--------~~~~~~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~ 354 (377)
T 3ju7_A 283 TEA--------VIQQFMPILCPEEVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWE 354 (377)
T ss_dssp CSC--------BCCSSEEEECCTTSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCT
T ss_pred CCc--------ceEEEEEEEeCChhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCC
Confidence 111 111244555553 378899999999999988651 1 10 13479999864
Q ss_pred --ChhHHHHHHHHHHhhh
Q 012785 440 --RDENYNLFVQRLSKIL 455 (456)
Q Consensus 440 --~~e~i~~~l~~L~~~l 455 (456)
++++++..++.|++++
T Consensus 355 ~~t~~di~~v~~~l~~~~ 372 (377)
T 3ju7_A 355 GMTKEIVEQIVICLGQKV 372 (377)
T ss_dssp TCCHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 8999999999998876
No 202
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.86 E-value=1.1e-21 Score=199.45 Aligned_cols=264 Identities=15% Similarity=0.063 Sum_probs=174.3
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG- 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~- 220 (456)
..++++.+++ ++. + +++++|+|+++++.+++.+++++|| +|++++|+|+.+...+...|++++.++.
T Consensus 59 ~~~~~~~la~-~g~------~-~~v~~~~G~t~a~~~~~~a~~~~gd----~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~ 126 (446)
T 2x3l_A 59 ILKSMKQVEK-HSD------Y-DGYFLVNGTTSGILSVIQSFSQKKG----DILMARNVHKSVLHALDISQQEGHFIETH 126 (446)
T ss_dssp HHHHHHHHCS-CTT------E-EEEEESSHHHHHHHHHHHTTTTSSS----CEEECTTCCHHHHHHHHHHTCCEEECEEE
T ss_pred HHHHHHHHHh-cCC------C-ceEEEeCCHHHHHHHHHHHhcCCCC----EEEEecCccHHHHHHHHHcCCeEEEEeCe
Confidence 4788888888 753 2 6899999999999999999999999 9999999999999999999998876655
Q ss_pred -Cc----------cccccCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCC-CCCC--CCC-CCCCCcEE
Q 012785 221 -DA----------KRFNKDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYW-PQYT--SIT-YPADHDLM 280 (456)
Q Consensus 221 -d~----------~~l~~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~-~~~~--~~~-~~~~~~i~ 280 (456)
|. +.+...+++++++++ +|+||.+.+ ++|+++|+++|+||+|.. ..+. +.. ...+.+++
T Consensus 127 ~~~~~~~~~~~d~~~l~~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~~g~Di~ 205 (446)
T 2x3l_A 127 QSPLTNHYNKVNLSRLNNDGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQADYV 205 (446)
T ss_dssp ECTTTSSEEEEEC-------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGGGTCSEE
T ss_pred eccccCcCCCCCHHHHcCCCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHHcCCCEE
Confidence 32 223223578888888 566999977 489999999999999985 1121 111 11234699
Q ss_pred EecCccccCCCCceEEEEEEeCHHHHH--HHHHHHhhc-cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHH
Q 012785 281 LFTVSKSTGHAGTRIGWALVKDMEVAK--KMTKYIELN-TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQM 357 (456)
Q Consensus 281 i~S~SK~~g~~G~RiG~l~~~~~~~~~--~l~~~~~~~-~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~ 357 (456)
+.|+||.++ ++.++||++++ +++++ .+....... +...+.....++...++.+.... . +...++.
T Consensus 206 ~~S~~K~l~-~~~g~g~l~~~-~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~g-------~---~~~~~~~ 273 (446)
T 2x3l_A 206 VQSFHKTLP-ALTMGSVLYIH-KNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQFYKTYD-------S---TLFFAKR 273 (446)
T ss_dssp EECHHHHSS-SCTTCEEEEEE-TTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHCC-------C---HHHHHHH
T ss_pred EECCccccc-cccccEEEEEc-CCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhC-------H---HHHHHHH
Confidence 999999654 44458999997 55433 343332222 33334333333333333222210 0 1133333
Q ss_pred HHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEee-cCCCCCCCCCeEEE
Q 012785 358 STRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTR-SGKHFGFSPKYVRI 435 (456)
Q Consensus 358 ~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~-pg~~fg~~~~~iRi 435 (456)
++.++.+.+. ++.+..+.+ ++++|+.+++ +...+.+.|+++||.+. +| .+++|+
T Consensus 274 ~~l~~~l~~~-----g~~~~~~~~-------------~~~l~i~~~~~~~~~l~~~L~~~GI~v~~~g------~~~iRi 329 (446)
T 2x3l_A 274 AQLIECLENK-----GFEMLQVDD-------------PLKLLIKYEGFTGHDIQNWFMNAHIYLELAD------DYQALA 329 (446)
T ss_dssp HHHHHHHHHH-----TCEEEECSS-------------TTEEEEECTTSCHHHHHHHHHHTTEEESEEC------SSCEEE
T ss_pred HHHHHHHHHc-----CCEECcCCC-------------CeEEEEEeCCcCHHHHHHHHHHCCCEEEecC------CCEEEE
Confidence 3444444433 233332222 2378888853 56678888888899997 53 468999
Q ss_pred EecC--ChhHHHHHHHHHHhhh
Q 012785 436 SMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 436 s~~~--~~e~i~~~l~~L~~~l 455 (456)
+++. +++++ +++++|++++
T Consensus 330 ~~~~~~t~e~i-~l~~aL~~~~ 350 (446)
T 2x3l_A 330 ILPLWHHDDTY-LFDSLLRKIE 350 (446)
T ss_dssp ECCCCCTTCCC-CHHHHHHHHH
T ss_pred EeecCCCHHHH-HHHHHHHHHH
Confidence 9975 78889 9999998875
No 203
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.86 E-value=5.8e-21 Score=194.87 Aligned_cols=273 Identities=12% Similarity=-0.001 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHhcCccCCCceEEEccCHH-HHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc
Q 012785 144 EFAKEVVRLHKVVGNAITENHHIVVGTGST-QLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG 220 (456)
Q Consensus 144 ~lr~aia~~~~~~g~~~~~~~~I~~t~G~~-~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 220 (456)
++++.++++++. +++ +++|+|++ .++.+++.++.. +++ .|++++|.|+.+...++..|++++.++.
T Consensus 137 ~~~~~la~~~g~------~~~-~~~t~g~te~a~~~al~~~~~~~~~~----~vi~~~~~h~s~~~~~~~~G~~~~~v~~ 205 (456)
T 2z67_A 137 KILESFFKQLGL------NVH-AIATPISTGMSISLCLSAARKKYGSN----VVIYPYASHKSPIKAVSFVGMNMRLVET 205 (456)
T ss_dssp HHHHHHHHHTTC------CCE-EEEESSCHHHHHHHHHHHHHHHHCCC----EEEEECCCCHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHcCC------CCC-EEEeCcHHHHHHHHHHHHHHHhcCCC----EEEEECCCcHHHHHHHHHcCCCceEEEE
Confidence 455555555542 334 99999999 455545555443 566 8999999999999999999999875543
Q ss_pred ---------Cccccc----c----CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC--CCCC---C
Q 012785 221 ---------DAKRFN----K----DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY--TSIT---Y 273 (456)
Q Consensus 221 ---------d~~~l~----~----~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~--~~~~---~ 273 (456)
|.+.++ . .++.++++++||||||.+.+ ++|+++|+++++|++|..... .+.. .
T Consensus 206 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~ 285 (456)
T 2z67_A 206 VLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAF 285 (456)
T ss_dssp EEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHH
T ss_pred eccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhh
Confidence 444432 1 25677888999999999976 489999999999999985432 1110 0
Q ss_pred CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHH
Q 012785 274 PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFT 353 (456)
Q Consensus 274 ~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~ 353 (456)
...-++++.|++|.++ .+.++||++++++++++.+.........+.+.+.+.++...+. .+.+++.
T Consensus 286 ~~~~D~~~~s~hK~~~-~p~g~G~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l~-------------~~~~~~~ 351 (456)
T 2z67_A 286 KYRVDAVVSSSDKNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMG-------------SKNYLEL 351 (456)
T ss_dssp TSCCSEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHH-------------HHHHHHH
T ss_pred CCCCCEEEEcCCCCcC-CCCCeEEEEEcCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHHH-------------HHHHHHH
Confidence 1144678999999765 6689999999658887777433211111222444555554443 3567788
Q ss_pred HHHHHHHHHHHHHHHHhcC---CccccCCCCcccccccccCCCCCceEEeec--CccHHHHHHHHHhCCE---Eee----
Q 012785 354 NHQMSTRWKQLRMAVQKSG---LFSVPELPSQFCTFLGRAFEPQPAFAWLKC--EQEIEDCESFLKGNKI---LTR---- 421 (456)
Q Consensus 354 ~~~~~~~~~~l~~~L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~--~~~~~~~~~~l~~~gI---~v~---- 421 (456)
.++++++++++.+.|++.+ ++.+..++ +++++.+ +.....+.+.|.++|| .+.
T Consensus 352 ~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~---------------~~v~~~~~~~~~~~~l~~~L~~~gi~~~rv~~~~g 416 (456)
T 2z67_A 352 VKNQKNSKKLLDELLNDLSKKTGGKFLDVE---------------SPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTD 416 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCBCCCC---------------CSSEEEEECSSCHHHHHHHHHHTTEESCEEECTTC
T ss_pred HHHHHHHHHHHHHHHHhcccccCCEecCCC---------------CeEEEEEecccHHHHHHHHHHHcCCCcceEEeecC
Confidence 8999999999999998873 34444433 2455566 4333567777888876 343
Q ss_pred --cCCCCCC-CCCeEEEEec--CChhHHHHHHHHHHhhhC
Q 012785 422 --SGKHFGF-SPKYVRISML--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 422 --pg~~fg~-~~~~iRis~~--~~~e~i~~~l~~L~~~l~ 456 (456)
+|.+|.. ..+++|++++ .+++++++++++|+++++
T Consensus 417 ~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~~ 456 (456)
T 2z67_A 417 HFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKILL 456 (456)
T ss_dssp HHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC--
T ss_pred ccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHhC
Confidence 2455543 3579999987 389999999999998763
No 204
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.85 E-value=2.4e-20 Score=190.13 Aligned_cols=285 Identities=12% Similarity=-0.014 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHH-HhcCccCC--CceEEEccCHHHHHHHHHHHhcC--------CC-----CCCCcEEEEeCCCCCChhh
Q 012785 143 PEFAKEVVRLHK-VVGNAITE--NHHIVVGTGSTQLFQAALYALSS--------QD-----ASEPISVVSAAPYYSSYPS 206 (456)
Q Consensus 143 ~~lr~aia~~~~-~~g~~~~~--~~~I~~t~G~~~al~~~~~~l~~--------~g-----d~~~~~Vlv~~P~y~~~~~ 206 (456)
.++++++++++. ..|.+... ...+++|+|+++++.+++.++.. +| + +|++++ +|..+..
T Consensus 80 ~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~----~vi~~~-~h~~~~~ 154 (452)
T 2dgk_A 80 AAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKP----NLVCGP-VQICWHK 154 (452)
T ss_dssp HHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCC----EEEESS-CCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc----EEEECC-CcHHHHH
Confidence 677788877774 34544321 12599999999999999988754 44 4 899999 9999999
Q ss_pred hhhhcCCeEeeeccCc-------ccccc---CCCeEEEEcCCCCCCcccch-----HHhhhc------CcEEEeeecCCC
Q 012785 207 ITDCVKSRLYKWAGDA-------KRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRS------GGILVHDLAYYW 265 (456)
Q Consensus 207 ~~~~~g~~~~~~~~d~-------~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~------~~~iI~De~y~~ 265 (456)
.++..|++++.++.|. +.++. .++++|++++|+||||.+.+ ++|+++ ++++++|++|.+
T Consensus 155 ~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~ 234 (452)
T 2dgk_A 155 FARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGG 234 (452)
T ss_dssp HHHHTTCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGG
T ss_pred HHHHcCceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHH
Confidence 9999999998776643 33332 35789999999999999976 478885 999999999985
Q ss_pred CCC---C---CCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHHHH-HHHHHHHhhc-----c-------CcCChHHH
Q 012785 266 PQY---T---SIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVA-KKMTKYIELN-----T-------IGVSKDSQ 325 (456)
Q Consensus 266 ~~~---~---~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~-~~l~~~~~~~-----~-------~~~s~~~q 325 (456)
... . ... ...+-+++..|++| +++.|.++||++++++++. +.+....... . .+...+.|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~d~~~~~~hK-~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 313 (452)
T 2dgk_A 235 FLAPFVAPDIVWDFRLPRVKSISASGHK-FGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQ 313 (452)
T ss_dssp GTHHHHCTTCCCSTTSTTEEEEEEETTT-TTCCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHH
T ss_pred HHHHhhCccchhhcCCCCCcEEEECccc-ccCCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHH
Confidence 311 1 111 12233567889999 5668999999999755432 3331100000 0 01134455
Q ss_pred HHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-
Q 012785 326 LRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ- 404 (456)
Q Consensus 326 ~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~- 404 (456)
.++...+. .+.+++..+++.++++++.+.|++++++.+..+... .+..+++.+++++
T Consensus 314 ~aal~~lg-------------~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~---------~~~~~~v~f~~~~~ 371 (452)
T 2dgk_A 314 YYEFLRLG-------------REGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRP---------DEGIPAVCFKLKDG 371 (452)
T ss_dssp HHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCT---------TTBSSEEEEEECTT
T ss_pred HHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCC---------CCCeEEEEEEecCc
Confidence 55555443 345778888899999999999998876665432100 0122356666643
Q ss_pred -----cHHHHHHHHHhCCEEeecCCCCC--CCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 405 -----EIEDCESFLKGNKILTRSGKHFG--FSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 405 -----~~~~~~~~l~~~gI~v~pg~~fg--~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+...+.+.|.++||.++...... .+.+++|+++.. ++++++.+++.|++++
T Consensus 372 ~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~ 431 (452)
T 2dgk_A 372 EDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASL 431 (452)
T ss_dssp CCCSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 23678888889999765422111 135689999975 6899999999998764
No 205
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.85 E-value=4.8e-20 Score=187.01 Aligned_cols=280 Identities=14% Similarity=0.047 Sum_probs=185.2
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh---------cCCCCCCCcEEEEeCCCCCChhhhhhhcC
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL---------SSQDASEPISVVSAAPYYSSYPSITDCVK 212 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l---------~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g 212 (456)
..+|+++++++++. + ++++++++++++.+++.++ ..+|| +|+++.|+|+.+...++..|
T Consensus 64 ~~~l~~~la~~~g~-------~-~~i~~~sGt~a~~~al~~l~~~~~~~~~~~~gd----~Vi~~~~~~~~~~~~~~~~g 131 (437)
T 3bb8_A 64 NDAFEKKLGEYLGV-------P-YVLTTTSGSSANLLALTALTSPKLGVRALKPGD----EVITVAAGFPTTVNPTIQNG 131 (437)
T ss_dssp HHHHHHHHHHHHTC-------S-EEEEESCHHHHHHHHHHHTTCGGGGGGSCCTTC----EEEECSSSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC-------C-cEEEeCCHHHHHHHHHHHhhhcccccccCCCcC----EEEECCCCcHHHHHHHHHcC
Confidence 48999999999964 2 5667777779999999998 78888 99999999999999999999
Q ss_pred CeEeeeccC-------cccccc---CCCeEEEEc-CCCCCCcccch---HHhhhcCcEEEeeecCCCCCCCCCC-CCCCC
Q 012785 213 SRLYKWAGD-------AKRFNK---DGPYIELVT-SPNNPDGSVRQ---SVVNRSGGILVHDLAYYWPQYTSIT-YPADH 277 (456)
Q Consensus 213 ~~~~~~~~d-------~~~l~~---~~~~~i~v~-~P~NPtG~~~~---~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~ 277 (456)
++++.++.| .+.++. .++++|+++ +|+|| ..+. ++|+++|+++|+|++|......... .....
T Consensus 132 ~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~g~~--~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~ 209 (437)
T 3bb8_A 132 LIPVFVDVDIPTYNVNASLIEAAVSDKTKAIMIAHTLGNL--FDLAEVRRVADKYNLWLIEDCCDALGSTYDGKMAGTFG 209 (437)
T ss_dssp CEEEECCEETTTTEECGGGHHHHCCTTEEEEEEECGGGCC--CCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSS
T ss_pred CEEEEEeccCccCCcCHHHHHHhcCCCCeEEEEeCCCCCh--hcHHHHHHHHHHcCCEEEEECccccCceECCeeccccc
Confidence 998766543 344432 357888886 57777 2233 4889999999999999842111111 11113
Q ss_pred cEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhc---------------------------------------cC
Q 012785 278 DLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELN---------------------------------------TI 318 (456)
Q Consensus 278 ~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~---------------------------------------~~ 318 (456)
++++.||+|..+++|.|.||++++++.+.+.+....... ..
T Consensus 210 d~~~~s~~~~k~l~~g~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 289 (437)
T 3bb8_A 210 DIGTVSFYPAKHITMGEGGAVFTQSAELKSIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNL 289 (437)
T ss_dssp SEEEEECSTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBC
T ss_pred CEEEEECcCCcCCCCCCeEEEEeCCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccCccc
Confidence 588899999999999999999997555554444322100 01
Q ss_pred cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceE
Q 012785 319 GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFA 398 (456)
Q Consensus 319 ~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~ 398 (456)
+.+.+.+.++...|+. ++...++.++.++++.+.|++++++...+..... ..++..+|.
T Consensus 290 ~~~~~~aa~~l~~l~~---------------~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~------~~~~~~~~~ 348 (437)
T 3bb8_A 290 KITDMQAACGLAQLER---------------IEEFVEKRKANFKYLKDALQSCADFIELPEATEN------SDPSWFGFP 348 (437)
T ss_dssp CCBHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHGGGGTTTEECCCCCTT------EECCCSSEE
T ss_pred CCCHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhhccCCccccCCCCCC------CceeeEEEE
Confidence 2245555555555541 1223333466677888888876433322111000 001222354
Q ss_pred E-eecC--ccHHHHHHHHHhCCEEeecCCC--CC--C-------------------CCCeEEEEecC--ChhHHHHHHHH
Q 012785 399 W-LKCE--QEIEDCESFLKGNKILTRSGKH--FG--F-------------------SPKYVRISMLD--RDENYNLFVQR 450 (456)
Q Consensus 399 ~-~~~~--~~~~~~~~~l~~~gI~v~pg~~--fg--~-------------------~~~~iRis~~~--~~e~i~~~l~~ 450 (456)
+ ++.+ .+.+.+.+.|.++||.++++.. +. . ..+.+||++.. ++++++.+++.
T Consensus 349 ~~~~~~~~~~~~~l~~~L~~~GI~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~i~~~ 428 (437)
T 3bb8_A 349 ITLKEDSGVSRIDLVKFLDEAKVGTRLLFAGNLTRQPYFHDVKYRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSK 428 (437)
T ss_dssp EEECGGGSSCHHHHHHHHHHTTBCCBCCTTSSGGGSGGGSSCCCEECSCCHHHHHHHHHEEEECCSTTCCHHHHHHHHHH
T ss_pred EEECCcCcCcHHHHHHHHHHCCCceeccCCcccccCchhhccCccccCCCcHHHHHhcCEEEecCCCCCCHHHHHHHHHH
Confidence 4 4543 2567888899999999998754 10 0 01249999865 89999999999
Q ss_pred HHhhhC
Q 012785 451 LSKILS 456 (456)
Q Consensus 451 L~~~l~ 456 (456)
|+++++
T Consensus 429 l~~~~~ 434 (437)
T 3bb8_A 429 FEEFFG 434 (437)
T ss_dssp HHHHTT
T ss_pred HHHHHc
Confidence 998763
No 206
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.85 E-value=2e-21 Score=198.70 Aligned_cols=277 Identities=13% Similarity=0.083 Sum_probs=172.2
Q ss_pred cccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCC-----C----CCCCcEEEEeCCC
Q 012785 130 YFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQ-----D----ASEPISVVSAAPY 200 (456)
Q Consensus 130 ~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~-----g----d~~~~~Vlv~~P~ 200 (456)
.|.+..| ..+|+++++++++. +++++|+|+++++.++++++..+ | | +|++..+.
T Consensus 69 ~y~~~~~-----~~~l~~~la~~~~~--------~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d----~Ii~~~~h 131 (467)
T 2oqx_A 69 AYSGSRS-----YYALAESVKNIFGY--------QYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSK----MVAFSNYF 131 (467)
T ss_dssp CSSSCHH-----HHHHHHHHHHHHCC--------SEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTT----CEEEESSC
T ss_pred eeccCch-----hHHHHHHHHHHhCc--------CcEEEcCCcHHHHHHHHHHHhccccccCCCCccc----eEEecccc
Confidence 4766556 48999999999852 58999999999999999999887 8 8 88877433
Q ss_pred CCChhhhhhhcCCeEee----------------eccCcccccc-------CCCeEEEEcCCCCCC-cccch--------H
Q 012785 201 YSSYPSITDCVKSRLYK----------------WAGDAKRFNK-------DGPYIELVTSPNNPD-GSVRQ--------S 248 (456)
Q Consensus 201 y~~~~~~~~~~g~~~~~----------------~~~d~~~l~~-------~~~~~i~v~~P~NPt-G~~~~--------~ 248 (456)
|..+.......|...+. +.+|.+.++. .++++|++++||||| |.+++ +
T Consensus 132 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~ 211 (467)
T 2oqx_A 132 FDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYS 211 (467)
T ss_dssp CHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHH
T ss_pred cccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHH
Confidence 33333444444554432 1134444432 257899999999998 77765 3
Q ss_pred HhhhcCcEEEeeecCCC----------CCCCCCC--C-C----CCCcEEEecCccccCCC-CceEEEEEEeCH---HHHH
Q 012785 249 VVNRSGGILVHDLAYYW----------PQYTSIT--Y-P----ADHDLMLFTVSKSTGHA-GTRIGWALVKDM---EVAK 307 (456)
Q Consensus 249 l~~~~~~~iI~De~y~~----------~~~~~~~--~-~----~~~~i~i~S~SK~~g~~-G~RiG~l~~~~~---~~~~ 307 (456)
+|+++|+++|+|+++.. ..+.+.. . . ..-++++.|+||.+|++ | ||++++++ +...
T Consensus 212 la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G---g~~~~~~~~~~~~~~ 288 (467)
T 2oqx_A 212 IAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG---GLLCMKDDSFFDVYT 288 (467)
T ss_dssp HHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC---EEEEECSGGGHHHHH
T ss_pred HHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCCCc---eEEEecChhHHHHHH
Confidence 89999999999943321 0111111 0 0 11235689999999877 5 78888633 2334
Q ss_pred HHHHHHhhc----cCcC-ChHHHHHHHHHHHhhhCCCCCCCCcchhHH-HHHHHHHHHHHHHHHHHHHhcCCccccCCCC
Q 012785 308 KMTKYIELN----TIGV-SKDSQLRAAKVLKVVSDSCKPSGSEDECFF-EFTNHQMSTRWKQLRMAVQKSGLFSVPELPS 381 (456)
Q Consensus 308 ~l~~~~~~~----~~~~-s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g 381 (456)
+++...... ..+. +.....+....+. +++ +...+..+++++.+.+.|++. ++.+. +.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~--------------~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~ 352 (467)
T 2oqx_A 289 ECRTLCVVQEGFPTYGGLEGGAMERLAVGLY--------------DGMNLDWLAYRIAQVQYLVDGLEEI-GVVCQ-QAG 352 (467)
T ss_dssp HHHHHHHHTTSSCCCCCCCHHHHHHHHHHHH--------------HTTCHHHHHHHHHHHHHHHHHHHHT-TCCEE-EEC
T ss_pred HHHHhhhccCCcccccchhhhHHHHHHHhhH--------------hhhhHHHHHHHHHHHHHHHHHHHHC-CCeee-cCC
Confidence 444332111 1121 2111111112222 111 123344567788889999887 35555 555
Q ss_pred cccccccccCCCCCceEEeecC----c-c-----HHHHHHHH-HhCCEEeecCCCC--CC----------CCCeEEEEec
Q 012785 382 QFCTFLGRAFEPQPAFAWLKCE----Q-E-----IEDCESFL-KGNKILTRSGKHF--GF----------SPKYVRISML 438 (456)
Q Consensus 382 ~~~~~~~~~~~~~~~f~~~~~~----~-~-----~~~~~~~l-~~~gI~v~pg~~f--g~----------~~~~iRis~~ 438 (456)
++ ++|++++ . + ...+.+.| .++||.+.|+..| +. ..+++|++++
T Consensus 353 ~~-------------~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~ 419 (467)
T 2oqx_A 353 GH-------------AAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIP 419 (467)
T ss_dssp SS-------------CEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCC
T ss_pred ce-------------EEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEec
Confidence 55 7888773 1 1 23345556 8999999996543 21 1379999998
Q ss_pred ---CChhHHHHHHHHHHhhh
Q 012785 439 ---DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 439 ---~~~e~i~~~l~~L~~~l 455 (456)
.+++++++++++|++++
T Consensus 420 ~~~~t~e~i~~~~~~l~~~l 439 (467)
T 2oqx_A 420 RATYTQTHMDFIIEAFKHVK 439 (467)
T ss_dssp TTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 67899999999999875
No 207
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.84 E-value=6.6e-20 Score=182.47 Aligned_cols=262 Identities=15% Similarity=0.105 Sum_probs=181.0
Q ss_pred ceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh--hhhhhcCC--eEeeec---------------cCccc
Q 012785 164 HHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP--SITDCVKS--RLYKWA---------------GDAKR 224 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~--~~~~~~g~--~~~~~~---------------~d~~~ 224 (456)
+.|++|+|+++++++++..+ .+|| +|++.+++|+.+. ..++..|. +++.++ .|.+.
T Consensus 52 ~~v~~~~sgt~a~~~~~~~~-~~gd----~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~ 126 (379)
T 3ke3_A 52 AAVIIPGSGTYGMEAVARQL-TIDE----DCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIET 126 (379)
T ss_dssp EEEEEESCHHHHHHHHHHHH-CTTC----EEEEEECSHHHHHHHHHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHH
T ss_pred CEEEEcCChhHHHHHHHHhC-CCCC----eEEEEeCCchhHHHHHHHHHhCCCCceEEEeccccccccccCCCCCCCHHH
Confidence 58999999999999998654 6899 9999999998754 34455553 544332 34444
Q ss_pred ccc----CCCeEEEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEecCccccCCC
Q 012785 225 FNK----DGPYIELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLFTVSKSTGHA 291 (456)
Q Consensus 225 l~~----~~~~~i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~S~SK~~g~~ 291 (456)
++. .++++++++.++||||.+++ ++|+++|+++|+|+++. . ..++. ...+-++++.|++|.++ .
T Consensus 127 l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g-~~~~~~~~~~~d~~~~s~~K~l~-~ 203 (379)
T 3ke3_A 127 AVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-G-CVWLDMKELGIDVLISAPQKGWS-S 203 (379)
T ss_dssp HHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-T-TCCCCHHHHTCSEEEECTTTTTC-S
T ss_pred HHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-C-CccccccccCCCEEEecchhhcC-C
Confidence 432 36788889899999999977 37889999999999987 2 22221 11245799999999886 4
Q ss_pred CceEEEEEEeCHHHHHHHHHHHh-------------------h---ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhH
Q 012785 292 GTRIGWALVKDMEVAKKMTKYIE-------------------L---NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECF 349 (456)
Q Consensus 292 G~RiG~l~~~~~~~~~~l~~~~~-------------------~---~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~ 349 (456)
+..+|+++++ +++++.+..... . ...+.+...+.++.++|+.+.+ .-
T Consensus 204 ~~g~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~----------~g 272 (379)
T 3ke3_A 204 TPCAGLVMLS-AAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKE----------IG 272 (379)
T ss_dssp CCCEEEEEEC-HHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHH----------HC
T ss_pred CCceEEEEEC-HHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHH----------hc
Confidence 3459999996 888887764110 0 1125667777777777764321 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCC-
Q 012785 350 FEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGF- 428 (456)
Q Consensus 350 l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~- 428 (456)
+++.+++++++++.+.+.|++++ +.+..+.+.. .+....+..++......+.|.++||.+.+|..+..
T Consensus 273 ~~~~~~~~~~l~~~l~~~l~~~g-~~~~~~~~~~----------~~~i~~~~~~~~~~~~~~~L~~~Gi~v~~g~~~~~~ 341 (379)
T 3ke3_A 273 FDILRDAQWELGNRVRKVLTDKG-IESVAAEGFE----------APGVVVSYTERDDMHKGSAFAEAGLQIAAGVPLKVG 341 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-CCBSBCTTCB----------CSSEEEEECSCHHHHSSHHHHHTTCCCEECCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CEecCCcccc----------CceEEEEccCCcchHHHHHHHHCCeEEeCCcccccc
Confidence 67788888999999999999875 4443332211 01122233332222226678899999999986632
Q ss_pred ---CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 429 ---SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 429 ---~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
..+.+||++.. +++++++++++|++++
T Consensus 342 ~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l 373 (379)
T 3ke3_A 342 EPDNFKTFRLGLFGLDKLTDIDGTVERFEKAL 373 (379)
T ss_dssp CCTTCCEEEEECCSHHHHTCHHHHHHHHHHHH
T ss_pred ccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHH
Confidence 36899999864 8899999999998875
No 208
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.83 E-value=1.2e-19 Score=184.16 Aligned_cols=311 Identities=12% Similarity=0.078 Sum_probs=195.1
Q ss_pred eEEecCCCCCCCchhHhhhcccccccccCccccccccC-----CCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEcc
Q 012785 96 IINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSD-----VRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGT 170 (456)
Q Consensus 96 ~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-----~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~ 170 (456)
...++.|.++...|..+..... ...+ ...|.+ ..|. .....++++.++++++. ++++|++++
T Consensus 66 ~~~~~~g~~~~~~p~~v~~~~~----~~~~--~~~~~~~~~~~~~g~-~~~~~~~~~~la~~~g~------~~~~i~~~~ 132 (438)
T 1wyu_A 66 KAFLGGGVRSHHVPPVVQALAA----RGEF--LTAYTPYQPEVSQGV-LQATFEYQTMIAELAGL------EIANASMYD 132 (438)
T ss_dssp TCCCCSSCCCCCCCHHHHHHHT----SHHH--HHCCSCCSGGGCHHH-HHHHHHHHHHHHHHHTS------SEECSCBSS
T ss_pred ccccCCCccCCcCcHHHHHHHh----cchh--hhcCCCCcchhhhhH-HHHHHHHHHHHHHHhCC------CccceEEeC
Confidence 3567788877776655432210 1122 122333 2231 00023566666666543 345788999
Q ss_pred CHH---HHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh----hhcCCeEeeecc-----CccccccCCCeEEEEcCC
Q 012785 171 GST---QLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT----DCVKSRLYKWAG-----DAKRFNKDGPYIELVTSP 238 (456)
Q Consensus 171 G~~---~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~----~~~g~~~~~~~~-----d~~~l~~~~~~~i~v~~P 238 (456)
|++ +++.+++ ...+|| +|++++|+|+.+...+ +..|++++.++. |.+.+ ..++++|++++|
T Consensus 133 g~taa~ea~~~a~--~~~~gd----~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~~~~~d~~~i-~~~t~~v~i~~p 205 (438)
T 1wyu_A 133 GATALAEGVLLAL--RETGRM----GVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRTPLPEV-GEEVGAVVVQNP 205 (438)
T ss_dssp HHHHHHHHHHHHH--HHHTCC----EEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBCCCCCC-CTTEEEEEEESS
T ss_pred cHHHHHHHHHHHH--hcCCCC----EEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCcCCccCHHHh-CCCeEEEEEECC
Confidence 999 5554443 246788 9999999999887655 447999887764 22222 236789999999
Q ss_pred CCCCcccch-----HHhhhcCcEEEeee--c-CCCCCCCCCCCCCCCcEEEecCccccC----CCCceEEEEEEeCHHHH
Q 012785 239 NNPDGSVRQ-----SVVNRSGGILVHDL--A-YYWPQYTSITYPADHDLMLFTVSKSTG----HAGTRIGWALVKDMEVA 306 (456)
Q Consensus 239 ~NPtG~~~~-----~l~~~~~~~iI~De--~-y~~~~~~~~~~~~~~~i~i~S~SK~~g----~~G~RiG~l~~~~~~~~ 306 (456)
||||.+.+ ++|+++|+++|+|- . |.. + ..+...+.+++++| +|.|| +.|.|+||++++ +++.
T Consensus 206 -n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~--~-~~~~~~g~D~~~~s-~kk~~~~~~~~Gp~~G~l~~~-~~~~ 279 (438)
T 1wyu_A 206 -NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGV--L-KPPGAYGADIAVGD-GQSLGLPMGFGGPHFGFLATK-KAFV 279 (438)
T ss_dssp -CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGT--B-CCHHHHTCSEEEEE-CTTTTCCCGGGCSCCEEEEEC-GGGG
T ss_pred -CCCeEEecHHHHHHHHHHcCCEEEEEechhhccC--c-CCCccCCCCEEEEC-CcccCCCccCCCCCeeEEEEc-HHHH
Confidence 99999876 47899999999662 2 321 1 11112234677877 77654 456699999997 7766
Q ss_pred HHHHHH-------------------------H-hhccCcC---ChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHH
Q 012785 307 KKMTKY-------------------------I-ELNTIGV---SKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQM 357 (456)
Q Consensus 307 ~~l~~~-------------------------~-~~~~~~~---s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~ 357 (456)
+.+... + ...+.+. +.+....+...+..+ .++.++++.+++
T Consensus 280 ~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~----------~~~g~~~~~~~~ 349 (438)
T 1wyu_A 280 RQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAAL----------GPEGLREVALKS 349 (438)
T ss_dssp GGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHH----------HHHHHHHHHHHH
T ss_pred HhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHh----------CHHHHHHHHHHH
Confidence 554210 0 1112222 223332222223321 134577888899
Q ss_pred HHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEe--ecCCCCCCCCCeEEE
Q 012785 358 STRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILT--RSGKHFGFSPKYVRI 435 (456)
Q Consensus 358 ~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v--~pg~~fg~~~~~iRi 435 (456)
+++++++.+.|++++++++..+...+ ..+.++++.+...+.+.|.++||.+ .++..|+ ++++||
T Consensus 350 ~~~~~~l~~~L~~~~g~~~~~~~~~~------------~~~~~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~--~~~lRi 415 (438)
T 1wyu_A 350 VEMAHKLHALLLEVPGVRPFTPKPFF------------NEFALALPKDPEAVRRALAERGFHGATPVPREYG--ENLALF 415 (438)
T ss_dssp HHHHHHHHHHHTTSTTCEECSCSSBC------------SEEEEECSSCHHHHHHHHHHTTCCCCEECCTTSC--SSEEEE
T ss_pred HHHHHHHHHHHhcCCCeEECCCCCeE------------EEEEEeCCCCHHHHHHHHHHCCceeccccccccC--CCeEEE
Confidence 99999999999988656665432211 0233444445677888888899999 7777665 789999
Q ss_pred Eec--CChhHHHHHHHHHHhhhC
Q 012785 436 SML--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 436 s~~--~~~e~i~~~l~~L~~~l~ 456 (456)
++. .+++++++++++|+++++
T Consensus 416 s~~~~~t~edi~~~~~~l~~~l~ 438 (438)
T 1wyu_A 416 AATELHEEEDLLALREALKEVLA 438 (438)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHC-
T ss_pred EecccCCHHHHHHHHHHHHHHhC
Confidence 997 389999999999998763
No 209
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.83 E-value=1.2e-19 Score=187.55 Aligned_cols=285 Identities=9% Similarity=0.039 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHH-HhcCccCCCceEEEccCHHHHHHHHHHHhcC--------CCCC--CCcEEEEeCCCCCChhhhhhhc
Q 012785 143 PEFAKEVVRLHK-VVGNAITENHHIVVGTGSTQLFQAALYALSS--------QDAS--EPISVVSAAPYYSSYPSITDCV 211 (456)
Q Consensus 143 ~~lr~aia~~~~-~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~--------~gd~--~~~~Vlv~~P~y~~~~~~~~~~ 211 (456)
.++++++.+++. ..|.+.. ++++++|+|+++++..++.++.. +|.. ....|+++.+.|+.+...++.+
T Consensus 131 ~~le~~~~~~la~~~g~~~~-~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~ 209 (504)
T 2okj_A 131 VLMEQITLKKMREIVGWSSK-DGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAAL 209 (504)
T ss_dssp HHHHHHHHHHHHHHHTCCSS-SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCC-CCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHc
Confidence 567777767763 3555432 46899999999999999988753 3400 0016899999999999999988
Q ss_pred CC---eEeeeccC------cccccc---C------CCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC
Q 012785 212 KS---RLYKWAGD------AKRFNK---D------GPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY 268 (456)
Q Consensus 212 g~---~~~~~~~d------~~~l~~---~------~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~ 268 (456)
|. +++.++.| .+.++. . ++++|++++|+||||.+.+ ++|+++|+++++|++|.+...
T Consensus 210 g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~ 289 (504)
T 2okj_A 210 GFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLL 289 (504)
T ss_dssp TSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGG
T ss_pred CCCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHH
Confidence 77 77766653 344432 1 3688999999999999866 489999999999999985322
Q ss_pred C-----C-CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHH-Hhhcc--------------------CcCC
Q 012785 269 T-----S-ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKY-IELNT--------------------IGVS 321 (456)
Q Consensus 269 ~-----~-~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~-~~~~~--------------------~~~s 321 (456)
. . +.....-++++.|++|.++.| .++|+++++++++.+..... ..... ....
T Consensus 290 ~~~~~~~~~~g~~~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~ 368 (504)
T 2okj_A 290 MSRKHRHKLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVD 368 (504)
T ss_dssp GCTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCC
T ss_pred hCHhhHhhcCCcccCCEEEECchhhcCCC-cceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCcc
Confidence 1 1 111123468889999998855 78999999855555532211 11110 0113
Q ss_pred hHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccC---CCCcccccccccCCCCCceE
Q 012785 322 KDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPE---LPSQFCTFLGRAFEPQPAFA 398 (456)
Q Consensus 322 ~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~---~~g~~~~~~~~~~~~~~~f~ 398 (456)
.+.+.++.+.+. .+.+++..++..++++++.+.|++.+++++.. |..+. +.
T Consensus 369 ~l~~~a~l~~lg-------------~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~-------------v~ 422 (504)
T 2okj_A 369 IFKFWLMWKAKG-------------TVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTN-------------VC 422 (504)
T ss_dssp HHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSC-------------EE
T ss_pred HHHHHHHHHHhh-------------HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEE-------------EE
Confidence 566666666554 34577788888999999999999876666653 33332 33
Q ss_pred EeecCcc-----------------HHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec---CChhHHHHHHHHHHhhh
Q 012785 399 WLKCEQE-----------------IEDCESFLKGNKILTRSGKHFGFSPKYVRISML---DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 399 ~~~~~~~-----------------~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~---~~~e~i~~~l~~L~~~l 455 (456)
+...+.. ...+.+.|.++|+.+..+..++...+++|+++. .++++++.++++|++++
T Consensus 423 f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~ 499 (504)
T 2okj_A 423 FWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLG 499 (504)
T ss_dssp EEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEeCccccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 3322211 245667777888654433334322368999996 38899999999998875
No 210
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.83 E-value=5.3e-20 Score=188.49 Aligned_cols=269 Identities=14% Similarity=0.077 Sum_probs=178.0
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc--------C-----------------CC---CCCCcE
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS--------S-----------------QD---ASEPIS 193 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~--------~-----------------~g---d~~~~~ 193 (456)
..+|++++++.+...- +. ..++|++++|+++|++.+++++. . +| + +
T Consensus 108 ~~~l~~~la~~l~~~~-~~-~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~----~ 181 (472)
T 1ohv_A 108 PENFVEKLRESLLSVA-PK-GMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDY----S 181 (472)
T ss_dssp BTTHHHHHHHTGGGGC-CT-TCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCC----E
T ss_pred HHHHHHHHHHHHHHhC-CC-CcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCC----e
Confidence 3789999998654321 11 24689999999999999998874 1 34 5 9
Q ss_pred EEEeCCCCCChhhhhhhc-CCe-------------Eeeecc------------------Ccccccc---C------CCeE
Q 012785 194 VVSAAPYYSSYPSITDCV-KSR-------------LYKWAG------------------DAKRFNK---D------GPYI 232 (456)
Q Consensus 194 Vlv~~P~y~~~~~~~~~~-g~~-------------~~~~~~------------------d~~~l~~---~------~~~~ 232 (456)
|++.+++|+++...+..+ |.. .++++. |.+.++. . ++++
T Consensus 182 ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 261 (472)
T 1ohv_A 182 ILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAG 261 (472)
T ss_dssp EEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 999999999988766433 211 012210 2333322 1 5677
Q ss_pred EEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCC--C-CCCCCc--EEEecCccccCCCCceEEEE
Q 012785 233 ELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSI--T-YPADHD--LMLFTVSKSTGHAGTRIGWA 298 (456)
Q Consensus 233 i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~--~-~~~~~~--i~i~S~SK~~g~~G~RiG~l 298 (456)
|+++..+|+||.+.+ ++|+++|+++|+||+|.+..+.+. . ...+.. +-+.||||.+ +.| ||+
T Consensus 262 vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~sK~~-l~G---G~~ 337 (472)
T 1ohv_A 262 IIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKM-MTG---GFF 337 (472)
T ss_dssp EEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEECGGG-SSE---EEE
T ss_pred EEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEcccc-ccC---Ccc
Confidence 877666888997643 389999999999999986444331 1 111111 3356899995 345 777
Q ss_pred EEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc----CC-
Q 012785 299 LVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS----GL- 373 (456)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~----~~- 373 (456)
+ + +++. .+.......+++.++++|.++.+.|+.+.+. ...++++++++.+.+.|+++ +.
T Consensus 338 ~-~-~~~~-~~~~~~~~~T~~~~~~~~aaa~aal~~~~~~-------------~~~~~~~~~~~~l~~~L~~l~~~~~~~ 401 (472)
T 1ohv_A 338 H-K-EEFR-PNAPYRIFNTWLGDPSKNLLLAEVINIIKRE-------------DLLSNAAHAGKVLLTGLLDLQARYPQF 401 (472)
T ss_dssp E-C-GGGS-CSSSSSSCCSSSSCHHHHHHHHHHHHHHHHT-------------THHHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred C-c-hhhc-ccccccccCccCccHHHHHHHHHHHHHHHhC-------------CHHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence 6 5 5552 2223334467788999999999988854332 24566777777777777654 21
Q ss_pred ccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec--CChhHHHHHHH
Q 012785 374 FSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGFSPKYVRISML--DRDENYNLFVQ 449 (456)
Q Consensus 374 ~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~ 449 (456)
+...++. +.|++++++. ....+.+.|.++||.+.|+ +.++||++++ .++++++++++
T Consensus 402 v~~~~~~--------------g~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-----g~~~iRi~~~~~~t~e~i~~~~~ 462 (472)
T 1ohv_A 402 ISRVRGR--------------GTFCSFDTPDESIRNKLISIARNKGVMLGGC-----GDKSIRFRPTLVFRDHHAHLFLN 462 (472)
T ss_dssp CEEEEEE--------------TTEEEEECSSHHHHHHHHHHHHHTTEECEEE-----TTTEEEECCCTTCCHHHHHHHHH
T ss_pred EEeecCC--------------ceEEEEEeCChhHHHHHHHHHHHCCeEEecC-----CCCEEEEECCCCCCHHHHHHHHH
Confidence 2212222 3367777754 2456777777899999984 2679999665 48999999999
Q ss_pred HHHhhh
Q 012785 450 RLSKIL 455 (456)
Q Consensus 450 ~L~~~l 455 (456)
+|++++
T Consensus 463 ~l~~~l 468 (472)
T 1ohv_A 463 IFSDIL 468 (472)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 211
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.80 E-value=2.5e-18 Score=172.25 Aligned_cols=205 Identities=12% Similarity=0.055 Sum_probs=150.8
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEE--ccCHHHHHHHHHHHhcCCCCCCCcEEEEeC-CCCCChhh----------hh
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVV--GTGSTQLFQAALYALSSQDASEPISVVSAA-PYYSSYPS----------IT 208 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~--t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~-P~y~~~~~----------~~ 208 (456)
..+|++.+|++++. +..+++ ++|+++++.+++.+++++|| +|++++ |.|..+.. .+
T Consensus 61 ~~~Le~~lA~l~g~-------e~alv~p~~~sGt~Ai~~al~all~~GD----~Vl~~~~~~y~~~~~~~~~~g~~~~~l 129 (409)
T 3jzl_A 61 RDTLERVYATVFKT-------EAALVRPQIISGTHAISTVLFGILRPDD----ELLYITGQPYDTLEEIVGIRKQGQGSL 129 (409)
T ss_dssp HHHHHHHHHHHHTC-------SEEEEETTSCSHHHHHHHHHHHHCCTTC----EEEECSSSCCTTHHHHHTSSSSSSSCT
T ss_pred HHHHHHHHHHHhCC-------CcEEEECCCccHHHHHHHHHHHhcCCCC----EEEEeCCCCcHhHHHHHhcccchhhHH
Confidence 47899999999863 233443 88999999999999999999 999998 99999884 45
Q ss_pred hhcCCeEeeecc------Ccccccc---CCCeEEEEcC----CCCCCcccch-----HHhhh--cCcEEEeeecCCCCCC
Q 012785 209 DCVKSRLYKWAG------DAKRFNK---DGPYIELVTS----PNNPDGSVRQ-----SVVNR--SGGILVHDLAYYWPQY 268 (456)
Q Consensus 209 ~~~g~~~~~~~~------d~~~l~~---~~~~~i~v~~----P~NPtG~~~~-----~l~~~--~~~~iI~De~y~~~~~ 268 (456)
+..|+++..++. |.+.++. .++++|++++ |+||||.+.+ ++|++ +|+++|+|++|..+.+
T Consensus 130 ~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~ 209 (409)
T 3jzl_A 130 KDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVE 209 (409)
T ss_dssp GGGTCEEEECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTS
T ss_pred HHcCCEEEEeCCCCCCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcccccc
Confidence 667898887765 4444432 3679999999 9999999876 37889 9999999999986432
Q ss_pred CCCCCCCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHHHhh----ccCcCChHHHHHHHHHHHhhhCCCCCCC
Q 012785 269 TSITYPADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKYIEL----NTIGVSKDSQLRAAKVLKVVSDSCKPSG 343 (456)
Q Consensus 269 ~~~~~~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~~~~----~~~~~s~~~q~~a~~~L~~~~~~~~~~~ 343 (456)
..-+...+.+++++|+||.+|.+| .+.||++++ ++++++++..... ...+.+...+.++...++
T Consensus 210 ~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~-~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~---------- 278 (409)
T 3jzl_A 210 YQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGK-EALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFF---------- 278 (409)
T ss_dssp SCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEEC-HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHH----------
T ss_pred cCCccccCCeEEEECccccCCccCCceEEEEEeC-HHHHHHHHHHhccccccccccccHHHHHHHHHHHh----------
Confidence 111222356799999999998555 446999996 9999999875432 122332222333444343
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012785 344 SEDECFFEFTNHQMSTRWKQLRMAVQKSGL 373 (456)
Q Consensus 344 ~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~ 373 (456)
.+...+++..++.+.+.+.|++++.
T Consensus 279 -----~~~~r~~~~~~~a~~la~~L~~~g~ 303 (409)
T 3jzl_A 279 -----LAPHVTAQAIKGARFTAAMLAEFGV 303 (409)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3445667778889999999999874
No 212
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.80 E-value=2.8e-18 Score=172.50 Aligned_cols=205 Identities=12% Similarity=0.031 Sum_probs=151.2
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEE--ccCHHHHHHHHHHHhcCCCCCCCcEEEEeC-CCCCChh-----------hh
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVV--GTGSTQLFQAALYALSSQDASEPISVVSAA-PYYSSYP-----------SI 207 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~--t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~-P~y~~~~-----------~~ 207 (456)
..+|++.+|++++. +..+++ ++|+++++.+++.+++++|| +|++++ |.|+.+. ..
T Consensus 75 ~~~Le~~lA~l~g~-------e~alv~p~~~sGt~Ai~~al~all~pGD----~Vl~~~~~~y~~~~~~~g~~~~~~~~~ 143 (427)
T 3i16_A 75 RDSLDAVYARVFNT-------ESALVRPHFVNGTHALGAALFGNLRPGN----TMLSVCGEPYDTLHDVIGITENSNMGS 143 (427)
T ss_dssp HHHHHHHHHHHHTC-------SEEEEETTCCSHHHHHHHHHHHHCCTTC----EEEESSSSCCGGGHHHHTCSCCCSSCC
T ss_pred HHHHHHHHHHHhCC-------cceEEeCCCccHHHHHHHHHHHHhCCCC----EEEEeCCCccHHHHHHHhccccchHHH
Confidence 47899999999874 233443 78889999999999999999 999999 9999877 44
Q ss_pred hhhcCCeEeeecc------Ccccccc-----CCCeEEEEcC----CCCCCcccch-----HHhhh--cCcEEEeeecCCC
Q 012785 208 TDCVKSRLYKWAG------DAKRFNK-----DGPYIELVTS----PNNPDGSVRQ-----SVVNR--SGGILVHDLAYYW 265 (456)
Q Consensus 208 ~~~~g~~~~~~~~------d~~~l~~-----~~~~~i~v~~----P~NPtG~~~~-----~l~~~--~~~~iI~De~y~~ 265 (456)
++..|+++..++. |.+.++. .++++|++++ |+||||.+.+ ++|++ +|+++|+|++|..
T Consensus 144 l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~ 223 (427)
T 3i16_A 144 LKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGE 223 (427)
T ss_dssp TGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTT
T ss_pred HHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCcc
Confidence 5667998887775 4444432 4679999999 9999999866 37889 9999999999986
Q ss_pred CCCCCCCCCCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHHHhhccCc--CCh-HH-HHHHHHHHHhhhCCCC
Q 012785 266 PQYTSITYPADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKYIELNTIG--VSK-DS-QLRAAKVLKVVSDSCK 340 (456)
Q Consensus 266 ~~~~~~~~~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~~~~~~~~--~s~-~~-q~~a~~~L~~~~~~~~ 340 (456)
+.+...+...+.+|+++|+||.+|.+| .+.||++++ ++++++++........+ .++ +. ...+...+.
T Consensus 224 ~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~-~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl~------- 295 (427)
T 3i16_A 224 FMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGT-KDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLF------- 295 (427)
T ss_dssp TSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHH-------
T ss_pred ccccCCccccCCeEEEecCcccCCCCCCceEEEEEEC-HHHHHHHHHhcccCccCccCCccHHHHHHHHHHHH-------
Confidence 532222222356799999999998655 577999996 99999998854322222 122 22 333333333
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012785 341 PSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGL 373 (456)
Q Consensus 341 ~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~ 373 (456)
.+...+++..+++..+.+.|++++.
T Consensus 296 --------~~~~r~~~~~~~a~~la~~L~~~g~ 320 (427)
T 3i16_A 296 --------LAPHISMEALKGAILCSRIMELAGF 320 (427)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3455677888888999999999874
No 213
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.80 E-value=9.8e-19 Score=179.80 Aligned_cols=284 Identities=11% Similarity=0.009 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHH-HhcCccC------CCceEEEccCHHHHHHHHHHHhcCC---------CCC------CCcEEEEeCCC
Q 012785 143 PEFAKEVVRLHK-VVGNAIT------ENHHIVVGTGSTQLFQAALYALSSQ---------DAS------EPISVVSAAPY 200 (456)
Q Consensus 143 ~~lr~aia~~~~-~~g~~~~------~~~~I~~t~G~~~al~~~~~~l~~~---------gd~------~~~~Vlv~~P~ 200 (456)
.++++++++++. ..|.+.. ....+++|+|+++++..++.++... ||- ....|++++++
T Consensus 112 ~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~ 191 (486)
T 1js3_A 112 TELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQA 191 (486)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTC
T ss_pred HHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCC
Confidence 788889988884 4565532 1247899999999999988776421 210 00137889999
Q ss_pred CCChhhhhhhcCCeEeeeccC------ccccccC---C------CeEEEEcCCCCCCcccch-----HHhhhcCcEEEee
Q 012785 201 YSSYPSITDCVKSRLYKWAGD------AKRFNKD---G------PYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHD 260 (456)
Q Consensus 201 y~~~~~~~~~~g~~~~~~~~d------~~~l~~~---~------~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~D 260 (456)
|+.+...++..|++++.++.| .+.++.. + +.+|++++|+||||.+-+ ++|+++|+++++|
T Consensus 192 h~s~~~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD 271 (486)
T 1js3_A 192 HSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVD 271 (486)
T ss_dssp CHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEE
T ss_pred cHHHHHHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEe
Confidence 999999999999999887764 3334321 1 248888999999998855 4899999999999
Q ss_pred ecCCCCC-----CCCCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHHH-HHHHH---HHHhh---------------
Q 012785 261 LAYYWPQ-----YTSIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEV-AKKMT---KYIEL--------------- 315 (456)
Q Consensus 261 e~y~~~~-----~~~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~-~~~l~---~~~~~--------------- 315 (456)
++|.+.. +.... ...+-+.+..+++|.++.| .++||++++++.. .+.+. .+...
T Consensus 272 ~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p-~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 350 (486)
T 1js3_A 272 AAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-FDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQ 350 (486)
T ss_dssp CTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESCHHHHHGGGC------------CCSCCCGGGSS
T ss_pred hhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC-cceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccC
Confidence 9998521 22211 1112356678999998855 8999999986654 33331 11100
Q ss_pred --ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccC-CCCcccccccccCC
Q 012785 316 --NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPE-LPSQFCTFLGRAFE 392 (456)
Q Consensus 316 --~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~g~~~~~~~~~~~ 392 (456)
.......+.+.++...+. .+.+++..++..++++++.+.|++.+++++.. |..+
T Consensus 351 ~~~~rr~~~~~~~~al~~~g-------------~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~---------- 407 (486)
T 1js3_A 351 LPLGRRFRSLKMWFVFRMYG-------------VKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLG---------- 407 (486)
T ss_dssp SCSCCCCTHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSS----------
T ss_pred CCCCCchhHHHHHHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCcee----------
Confidence 001123455665555554 45677888888999999999999886666643 3322
Q ss_pred CCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC---ChhHHHHHHHHHHhhh
Q 012785 393 PQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD---RDENYNLFVQRLSKIL 455 (456)
Q Consensus 393 ~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~---~~e~i~~~l~~L~~~l 455 (456)
++.+.++. ..+.+.+.|.++|+.+.++..|+ +.+++|+++.. +++++++++++|++++
T Consensus 408 ----~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~~~~lRi~~~~~~~t~~di~~~~~~l~~~~ 471 (486)
T 1js3_A 408 ----LVCFRLKGSDGLNEALLERINSARKIHLVPCRLR-GQFVLRFAICSRKVESGHVRLAWEHIRGLA 471 (486)
T ss_dssp ----EEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEET-TEEEEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ----EEEEEecChHHHHHHHHHHHHhcCCEEEEEEEEC-CEEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 34445542 14567777777786654444443 36799999853 6789999999998764
No 214
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.79 E-value=3.8e-18 Score=175.97 Aligned_cols=286 Identities=10% Similarity=0.035 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHH-HhcCccCCCceE---EEccCHHHHHHHHHHHhcCC--------CCC-CCcEEEEeCCCCCChhhhhh
Q 012785 143 PEFAKEVVRLHK-VVGNAITENHHI---VVGTGSTQLFQAALYALSSQ--------DAS-EPISVVSAAPYYSSYPSITD 209 (456)
Q Consensus 143 ~~lr~aia~~~~-~~g~~~~~~~~I---~~t~G~~~al~~~~~~l~~~--------gd~-~~~~Vlv~~P~y~~~~~~~~ 209 (456)
.++++.+.+++. .+|.+..+ +++ ++|+|+++++.+++.++..+ |+. ...+|+++.++|..+...++
T Consensus 94 ~~le~~~~~~la~l~g~~~~~-~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~ 172 (502)
T 3hbx_A 94 TELQNRCVNMIAHLFNAPLEE-AETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFAR 172 (502)
T ss_dssp HHHHHHHHHHHHHHTTCCCCS-SCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCccc-ccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHH
Confidence 567777777764 35554322 233 35999999999998887654 531 11189999999999999999
Q ss_pred hcCCeEeeeccCc-------ccccc---CCCeEEEEcCCCCCCcccch-----HHhhhc------CcEEEeeecCCCC--
Q 012785 210 CVKSRLYKWAGDA-------KRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRS------GGILVHDLAYYWP-- 266 (456)
Q Consensus 210 ~~g~~~~~~~~d~-------~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~------~~~iI~De~y~~~-- 266 (456)
..|++++.++.|. +.++. .++++|++++|+||||.+.+ ++|+++ |+++++|++|.+.
T Consensus 173 ~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~ 252 (502)
T 3hbx_A 173 YFEVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIA 252 (502)
T ss_dssp HTTCEEEEECCBTTBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTH
T ss_pred HcCceeEEEecCCCcCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhh
Confidence 9999988776543 33332 35788999999999999876 478888 9999999999842
Q ss_pred -----CCCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHH-hhcc---------C---cCChHHHHHH
Q 012785 267 -----QYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI-ELNT---------I---GVSKDSQLRA 328 (456)
Q Consensus 267 -----~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~-~~~~---------~---~~s~~~q~~a 328 (456)
.........+-+++..|.+|.++ .+.++||+++.+++......... .... . +...+.|.++
T Consensus 253 p~~~~~~~~~~~~~~~D~v~~s~hK~l~-~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~a 331 (502)
T 3hbx_A 253 PFLYPELEWDFRLPLVKSINVSGHKYGL-VYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQ 331 (502)
T ss_dssp HHHCTTCCCSTTSTTEEEEEEETTTTTC-CCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHH
T ss_pred hhhCcccccccCCCCceEEEECcccccC-CCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHH
Confidence 11111112234677889999664 77889999987555432111100 0000 0 1133445555
Q ss_pred HHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc----
Q 012785 329 AKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---- 404 (456)
Q Consensus 329 ~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---- 404 (456)
...+. .+.+....++..++++++.+.|++++.+.+..+. +..+++.+.+++
T Consensus 332 l~~lg-------------~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~------------~~~~~v~f~~~~~~~~ 386 (502)
T 3hbx_A 332 LIRLG-------------HEGYRNVMENCRENMIVLREGLEKTERFNIVSKD------------EGVPLVAFSLKDSSCH 386 (502)
T ss_dssp HHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCS------------SSSSEEEEEESSCSSC
T ss_pred HHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCC------------CCceEEEEEecCCCcC
Confidence 55444 3445677778888888999999998766665431 122366777653
Q ss_pred cHHHHHHHHHhCCEEeecCCCCC--CCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 405 EIEDCESFLKGNKILTRSGKHFG--FSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 405 ~~~~~~~~l~~~gI~v~pg~~fg--~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+...+.+.|.++||.+....... .+..++||++.. ++|+++.+++.|++++
T Consensus 387 ~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l 441 (502)
T 3hbx_A 387 TEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVM 441 (502)
T ss_dssp CHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 34578889999999986533221 134689999864 8899999999998875
No 215
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.79 E-value=6.3e-18 Score=168.61 Aligned_cols=266 Identities=11% Similarity=-0.009 Sum_probs=176.9
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-------cCCCCCCCcEEEEeCCCCCChhhhhhhcCCe
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL-------SSQDASEPISVVSAAPYYSSYPSITDCVKSR 214 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l-------~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~ 214 (456)
..+++++++++++. + ++++++++++++.+++.++ ..+|| +|+++.|+|+.+...++..|++
T Consensus 36 ~~~l~~~la~~~~~-------~-~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~----~Vi~~~~~~~~~~~~~~~~g~~ 103 (390)
T 3b8x_A 36 VKQYETQFAKTFGS-------K-YAVMVSSGSTANLLMIAALFFTKKPRLKKGD----EIIVPAVSWSTTYYPLQQYGLR 103 (390)
T ss_dssp HHHHHHHHHHHHTC-------S-EEEEESCHHHHHHHHHHHTTSSSSCSCCTTC----EEEEESSSCHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHCC-------C-cEEEECCHHHHHHHHHHHHHhhhhcCCCCcC----EEEECCCCcHHHHHHHHHcCCE
Confidence 48999999999964 2 5566666668999999998 77888 9999999999999999999999
Q ss_pred EeeeccCc-------ccccc---CCCeEEEEcC-CCCCCcccch---HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEE
Q 012785 215 LYKWAGDA-------KRFNK---DGPYIELVTS-PNNPDGSVRQ---SVVNRSGGILVHDLAYYWPQYTSITYPADHDLM 280 (456)
Q Consensus 215 ~~~~~~d~-------~~l~~---~~~~~i~v~~-P~NPtG~~~~---~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~ 280 (456)
++.++.|. +.++. .++++|++++ ++||. .+. ++|+++|+++|+|++|........ ...+....
T Consensus 104 ~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~g~~~--~~~~i~~l~~~~~~~li~D~a~~~g~~~~~-~~~g~~~~ 180 (390)
T 3b8x_A 104 VKFVDIDINTLNIDIESLKEAVTDSTKAILTVNLLGNPN--NFDEINKIIGGRDIILLEDNCESMGATFNN-KCAGTFGL 180 (390)
T ss_dssp EEEECBCTTTCSBCHHHHHHHCCTTEEEEEEECGGGCCC--CHHHHHHHHTTSCCEEEEECTTCTTCEETT-EETTSSSS
T ss_pred EEEEecCccccCcCHHHHHHHhCcCCeEEEEECCccChh--hHHHHHHHHHHcCCEEEEECcCcccCEECC-cccccccc
Confidence 88776653 33322 3578888865 45551 222 489999999999999984221111 11122223
Q ss_pred EecCc----cccCCCCceEEEEEEeCHHHHHHHHHHHhhc-------------------------------cCcCChHHH
Q 012785 281 LFTVS----KSTGHAGTRIGWALVKDMEVAKKMTKYIELN-------------------------------TIGVSKDSQ 325 (456)
Q Consensus 281 i~S~S----K~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~-------------------------------~~~~s~~~q 325 (456)
+.+|| |.++ +| +.|+++++++++.++++...... +.+.+.+..
T Consensus 181 ~~~~s~~~~k~~~-~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a 258 (390)
T 3b8x_A 181 MGTFSSFYSNHIA-TM-EGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSG 258 (390)
T ss_dssp EEEEECCTTSSSC-SS-SCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHH
T ss_pred eEEEEccCCCCCc-cC-CceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHH
Confidence 33444 4443 33 45999997667877776654211 111555655
Q ss_pred HHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC--CcccccccccCCCCCceEEeecC
Q 012785 326 LRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELP--SQFCTFLGRAFEPQPAFAWLKCE 403 (456)
Q Consensus 326 ~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--g~~~~~~~~~~~~~~~f~~~~~~ 403 (456)
.++...|+ .++...++.+++++.+.+.|++++++.+..+. ..+ ..+++.++
T Consensus 259 a~~l~~l~---------------~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~------------~~~~i~~~ 311 (390)
T 3b8x_A 259 AIGIEQLK---------------KLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSW------------FGFSFIIK 311 (390)
T ss_dssp HHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCC------------CEEEEEEC
T ss_pred HHHHHHHH---------------HHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCccc------------EEEEEEec
Confidence 55544443 45567777888888999999887655554321 111 12555554
Q ss_pred ----ccHHHHHHHHHhCCEEeec---CCCCCC---------------------CCCeEEEEecC--ChhHHHHHHHHH
Q 012785 404 ----QEIEDCESFLKGNKILTRS---GKHFGF---------------------SPKYVRISMLD--RDENYNLFVQRL 451 (456)
Q Consensus 404 ----~~~~~~~~~l~~~gI~v~p---g~~fg~---------------------~~~~iRis~~~--~~e~i~~~l~~L 451 (456)
.+.+.+.+.|.++||.+++ |..+.. ..+.|||++.. ++++++.+++.|
T Consensus 312 ~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 312 KDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp TTSCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred CcCcccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 1567788889999999987 332111 01369999875 899999988876
No 216
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.79 E-value=1.1e-18 Score=180.05 Aligned_cols=282 Identities=10% Similarity=0.042 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHH-HhcCccCCCceEEEccCHHHHHHHHHHHh----c---------CCCCCC---CcEEEEeCCCCCChh
Q 012785 143 PEFAKEVVRLHK-VVGNAITENHHIVVGTGSTQLFQAALYAL----S---------SQDASE---PISVVSAAPYYSSYP 205 (456)
Q Consensus 143 ~~lr~aia~~~~-~~g~~~~~~~~I~~t~G~~~al~~~~~~l----~---------~~gd~~---~~~Vlv~~P~y~~~~ 205 (456)
.++++.+.+++. ..|.+ +.+.+++|+|+++++..++.++ . .+|... ...|+++.++|..+.
T Consensus 139 ~~le~~~~~~la~~~g~~--~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~ 216 (497)
T 2qma_A 139 TYVEQKVVNWLCDKYDLS--EKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQ 216 (497)
T ss_dssp HHHHHHHHHHHHHHTTCC--TTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHH
T ss_pred HHHHHHHHHHHHHHhCCC--CCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHH
Confidence 677777666664 34443 2368999999999999998874 2 122100 016889999999999
Q ss_pred hhhhhcCC---eEeeecc------Ccccccc----C---CCe--EEEEcCCCCCCcccch-----HHhhhcCcEEEeeec
Q 012785 206 SITDCVKS---RLYKWAG------DAKRFNK----D---GPY--IELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLA 262 (456)
Q Consensus 206 ~~~~~~g~---~~~~~~~------d~~~l~~----~---~~~--~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~ 262 (456)
..++.+|. +++.++. |.+.++. . +++ +|+++.|+||||...+ ++|+++|+++++|++
T Consensus 217 ~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a 296 (497)
T 2qma_A 217 KSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGA 296 (497)
T ss_dssp HHHHHTTSCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEET
T ss_pred HHHHHcCCCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehh
Confidence 88888876 6766665 4444432 1 233 7888899999999765 489999999999999
Q ss_pred CCCCCCC-C----CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCc----C-------------
Q 012785 263 YYWPQYT-S----ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIG----V------------- 320 (456)
Q Consensus 263 y~~~~~~-~----~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~----~------------- 320 (456)
|.+.... + +......++++.|++|.++.| .++||++++++...+.+.........+ .
T Consensus 297 ~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p-~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~ 375 (497)
T 2qma_A 297 YGGALILSSHKSRLKGVERAHSISVDFHKLFYQT-ISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRF 375 (497)
T ss_dssp TGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCC-SSCEEEEESCGGGGGGGCC--------------------CCSCCC
T ss_pred hhHHHHhCcchHhhcCcccCCEEEEcchhccCCC-cceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCch
Confidence 9863221 1 111123468899999988855 699999998665443332110000000 0
Q ss_pred ChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcccc-CCCCcccccccccCCCCCceEE
Q 012785 321 SKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVP-ELPSQFCTFLGRAFEPQPAFAW 399 (456)
Q Consensus 321 s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~g~~~~~~~~~~~~~~~f~~ 399 (456)
..+.+.++...+. .+.++...++..++++.+.+.|++.+++.+. ++.+ ++++
T Consensus 376 ~al~~~~~l~~lg-------------~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~--------------~~v~ 428 (497)
T 2qma_A 376 DALKVFMTMQNVG-------------PKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSL--------------STVL 428 (497)
T ss_dssp THHHHHHHHHHTC-------------HHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCSS--------------SEEE
T ss_pred hHHHHHHHHHHhC-------------HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCCc--------------eEEE
Confidence 1222333333222 4567778888899999999999987666553 2322 2466
Q ss_pred eecCcc-------HHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec---CChhHHHHHHHHHHhhh
Q 012785 400 LKCEQE-------IEDCESFLKGNKILTRSGKHFGFSPKYVRISML---DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 400 ~~~~~~-------~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~---~~~e~i~~~l~~L~~~l 455 (456)
+.+.+. ...+.+.+.++|+.+.++..+. +.+++|+++. .+++++++++++|++++
T Consensus 429 f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~~~~~-g~~~lRis~~~~~~t~edi~~~~~~l~~~~ 493 (497)
T 2qma_A 429 FRATHETADLDELNKALRLEALTRGIAVLGETIVD-GKTALKFTILNPCLTTSDFESLLSKINMLA 493 (497)
T ss_dssp EEECCSSSCHHHHHHHHHHHHHHHTSCBCEEEEET-TEEEEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEcCCccCHHHHHHHHHHHHHhCCCEEEEeeEEC-CEEEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 665321 2356677888899988765553 3578999983 38999999999998875
No 217
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.79 E-value=6.7e-18 Score=169.78 Aligned_cols=204 Identities=12% Similarity=0.027 Sum_probs=150.7
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEE---ccCHHHHHHHHHHHhcCCCCCCCcEEEEeC-CCCCChh-----------h
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVV---GTGSTQLFQAALYALSSQDASEPISVVSAA-PYYSSYP-----------S 206 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~---t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~-P~y~~~~-----------~ 206 (456)
..+|++.+|++++. +..++ ++|+++++.+++.+++++|| +|++++ |.|..+. .
T Consensus 76 ~~~Le~~lA~l~g~--------e~alv~p~~~sGt~A~~~al~all~pGD----~Vl~~~~~~y~~~~~~~g~~~~~~~~ 143 (427)
T 3hvy_A 76 RDSLDRVYANIFNT--------ESAFVRPHFVNGTHAIGAALFGNLRPND----TMMSICGMPYDTLHDIIGMDDSKKVG 143 (427)
T ss_dssp HHHHHHHHHHHHTC--------SEEEEETTCCSHHHHHHHHHHHTCCTTC----EEEECSSSCCGGGHHHHTCCTTCCSC
T ss_pred HHHHHHHHHHHhCC--------CceEEeCCCCcHHHHHHHHHHHhcCCCC----EEEEeCCCCchhHHHHhccccchhhh
Confidence 47899999999863 34455 78889999999999999999 999999 9999876 4
Q ss_pred hhhhcCCeEeeecc-----Ccccccc-----CCCeEEEEcC----CCCCCcccch-----HHhhh--cCcEEEeeecCCC
Q 012785 207 ITDCVKSRLYKWAG-----DAKRFNK-----DGPYIELVTS----PNNPDGSVRQ-----SVVNR--SGGILVHDLAYYW 265 (456)
Q Consensus 207 ~~~~~g~~~~~~~~-----d~~~l~~-----~~~~~i~v~~----P~NPtG~~~~-----~l~~~--~~~~iI~De~y~~ 265 (456)
.++..|+++..++. |.+.++. .++++|++++ |+||||.+.+ ++|++ +|+++|+|++|..
T Consensus 144 ~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~ 223 (427)
T 3hvy_A 144 SLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGE 223 (427)
T ss_dssp CTGGGTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCT
T ss_pred HHHHcCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccc
Confidence 45667998887764 5555432 4689999999 9999999866 37888 8999999999986
Q ss_pred CCCCCCCCCCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHHHhhccCc----CChHHHHHHHHHHHhhhCCCC
Q 012785 266 PQYTSITYPADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKYIELNTIG----VSKDSQLRAAKVLKVVSDSCK 340 (456)
Q Consensus 266 ~~~~~~~~~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~~~~~~~~----~s~~~q~~a~~~L~~~~~~~~ 340 (456)
..+...+...+.+++++|+||.+|.+| .+.||++++ ++++++++........+ .+...+..+...+.
T Consensus 224 ~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~-~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~------- 295 (427)
T 3hvy_A 224 FVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGK-EEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLF------- 295 (427)
T ss_dssp TTSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHH-------
T ss_pred cccCCCCcccCCeEEEECCcccccccccceEEEEEEC-HHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHh-------
Confidence 432222223346799999999998554 466999986 99999998864322222 22222344444443
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012785 341 PSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGL 373 (456)
Q Consensus 341 ~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~ 373 (456)
.+...+++..++...+.+.|++++.
T Consensus 296 --------~~~~r~~~~~~~a~~la~~L~~~g~ 320 (427)
T 3hvy_A 296 --------MAPHVTIEAVKGAVFCARIMELAGF 320 (427)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3345667788888999999998874
No 218
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.78 E-value=1e-17 Score=173.10 Aligned_cols=286 Identities=9% Similarity=0.024 Sum_probs=195.4
Q ss_pred cccCCCCcccCCCHHHHHHHHHHHH-HhcCccCCCceEEEccCHHHHHHHHHHHhcC--------------CCCCCCcEE
Q 012785 130 YFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAITENHHIVVGTGSTQLFQAALYALSS--------------QDASEPISV 194 (456)
Q Consensus 130 ~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~--------------~gd~~~~~V 194 (456)
.|....+ ..++++++++|+. .+|.+.. ...+++|+|+++++..++.++.. +++ .|
T Consensus 126 ~~~~~p~-----~~~le~~~~~~l~~~~g~~~~-~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~----~v 195 (511)
T 3vp6_A 126 TYEIAPV-----FVLMEQITLKKMREIVGWSSK-DGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKL----VL 195 (511)
T ss_dssp CTTTCHH-----HHHHHHHHHHHHHHHHTCCSS-SCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCE----EE
T ss_pred CcccCch-----HHHHHHHHHHHHHHHhCCCCC-CCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCe----EE
Confidence 3554444 3789999999984 4676643 35899999999999988887754 455 89
Q ss_pred EEeCCCCCChhhhhhhcCC---eEeeecc------CccccccC---------CCeEEEEcCCCCCCcccch-----HHhh
Q 012785 195 VSAAPYYSSYPSITDCVKS---RLYKWAG------DAKRFNKD---------GPYIELVTSPNNPDGSVRQ-----SVVN 251 (456)
Q Consensus 195 lv~~P~y~~~~~~~~~~g~---~~~~~~~------d~~~l~~~---------~~~~i~v~~P~NPtG~~~~-----~l~~ 251 (456)
+++.++|+.+...++.+|. +++.++. |.+.++.. .+++|+++.|+||||.+-+ ++|+
T Consensus 196 ~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~ 275 (511)
T 3vp6_A 196 FTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICE 275 (511)
T ss_dssp EEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHH
T ss_pred EECCCchHHHHHHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHH
Confidence 9999999999999999998 7776665 44444321 1788999999999999855 4899
Q ss_pred hcCcEEEeeecCCCCCC-----CCCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHH-hhc--------
Q 012785 252 RSGGILVHDLAYYWPQY-----TSIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI-ELN-------- 316 (456)
Q Consensus 252 ~~~~~iI~De~y~~~~~-----~~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~-~~~-------- 316 (456)
++|+++++|++|..... .... ....-++++.+.+|.++.| ..+|+++++++++........ ...
T Consensus 276 ~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~ 354 (511)
T 3vp6_A 276 KYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMHASYLFQQDKHYD 354 (511)
T ss_dssp HHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSC
T ss_pred HcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCC-cCeEEEEEeCHHHHHHHhccCCccccCcccccc
Confidence 99999999999985221 1111 1123367889999998855 678999998666555432110 000
Q ss_pred --------cC----cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccC---CCC
Q 012785 317 --------TI----GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPE---LPS 381 (456)
Q Consensus 317 --------~~----~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~---~~g 381 (456)
+. ....+...++...+. .+.++++.++..++.+++.+.|++.+++++.. |..
T Consensus 355 ~~~~~~~~~~~~~r~~~al~~~~al~~~g-------------~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~ 421 (511)
T 3vp6_A 355 VSYDTGDKAIQCGRHVDIFKFWLMWKAKG-------------TVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEH 421 (511)
T ss_dssp GGGCCGGGSSCSSCCCCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSS
T ss_pred cccCccCCCCCCCCchHHHHHHHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCe
Confidence 00 112344444444443 46778888999999999999999887676654 222
Q ss_pred cccccccccCCCCCceEEeec-Ccc-----------------HHHHHHHHHhCCEEeecCCCC-CCCCCeEEEEecC---
Q 012785 382 QFCTFLGRAFEPQPAFAWLKC-EQE-----------------IEDCESFLKGNKILTRSGKHF-GFSPKYVRISMLD--- 439 (456)
Q Consensus 382 ~~~~~~~~~~~~~~~f~~~~~-~~~-----------------~~~~~~~l~~~gI~v~pg~~f-g~~~~~iRis~~~--- 439 (456)
. .+.+.+ +.. ...+.+.|.++|+.+.. ..+ +.+.+++|++++.
T Consensus 422 ~--------------~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~-~~~~~~~~~~lRi~~~~~~~ 486 (511)
T 3vp6_A 422 T--------------NVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVG-YQPQGDKANFFRMVISNPAA 486 (511)
T ss_dssp S--------------CEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEE-EEEETTEEEEEEECCCCTTC
T ss_pred E--------------EEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEE-EEEeCCceEEEEEEecCCCC
Confidence 2 233322 211 23577778888876554 112 2234589999842
Q ss_pred ChhHHHHHHHHHHhh
Q 012785 440 RDENYNLFVQRLSKI 454 (456)
Q Consensus 440 ~~e~i~~~l~~L~~~ 454 (456)
+.++++.+++.|+++
T Consensus 487 t~~di~~ll~~i~~~ 501 (511)
T 3vp6_A 487 TQSDIDFLIEEIERL 501 (511)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 789999999999875
No 219
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.77 E-value=6.6e-17 Score=172.32 Aligned_cols=285 Identities=13% Similarity=0.059 Sum_probs=184.7
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh-hhhcCCeEeeec-
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI-TDCVKSRLYKWA- 219 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~-~~~~g~~~~~~~- 219 (456)
..++++.+|++++. +..+++++|+++++.+++.+++++|| +|+++.|+|..+... +...|++++.++
T Consensus 175 i~e~e~~lA~~~ga-------e~~i~v~nGtt~an~~ai~al~~pGD----~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~ 243 (730)
T 1c4k_A 175 AVAAEKHAARVYNA-------DKTYFVLGGSSNANNTVTSALVSNGD----LVLFDRNNHKSVYNSALAMAGGRPVYLQT 243 (730)
T ss_dssp HHHHHHHHHHHTTC-------SEEEEESSHHHHHHHHHHHHHCCTTC----EEEEETTCCHHHHHHHTTTTCCEEEEECE
T ss_pred HHHHHHHHHHHHCC-------CcEEEECCHHHHHHHHHHHHhcCCCC----EEEEcCCchHHHHHHHHHHCCCEEEEEeC
Confidence 47899999999874 34688999999999999999999999 999999999988887 888899876543
Q ss_pred ----------cCcccc-----cc---CC------C----eEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC
Q 012785 220 ----------GDAKRF-----NK---DG------P----YIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP 266 (456)
Q Consensus 220 ----------~d~~~l-----~~---~~------~----~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~ 266 (456)
+|.+.+ +. .+ + +++++++| ||+|.+.+ ++|+++++++|+||+|...
T Consensus 244 ~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~ 322 (730)
T 1c4k_A 244 NRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGY 322 (730)
T ss_dssp EECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCG
T ss_pred CccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEcccccc
Confidence 355656 32 12 3 78999999 69999877 4899999999999999631
Q ss_pred -CC-------CCCCC---C--CCCcEEEecCccccCCCCceE-EEEEEeCHHH--------HHHHHHHHhhc-cCcCChH
Q 012785 267 -QY-------TSITY---P--ADHDLMLFTVSKSTGHAGTRI-GWALVKDMEV--------AKKMTKYIELN-TIGVSKD 323 (456)
Q Consensus 267 -~~-------~~~~~---~--~~~~i~i~S~SK~~g~~G~Ri-G~l~~~~~~~--------~~~l~~~~~~~-~~~~s~~ 323 (456)
.+ .++.. . ..++++++|+||++ +|.+. |+++++++.+ ..++....... +.+++..
T Consensus 323 ~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L--~g~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp~~~ 400 (730)
T 1c4k_A 323 EQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ--AGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYP 400 (730)
T ss_dssp GGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHS--SCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHH
T ss_pred cccCcccCCcCcccccccCCCCCCEEEEECCCCCC--CCCCCEEEEEecchhhcCcccccCHHHHHHHHHHhCCCCCcHH
Confidence 11 12211 1 22569999999975 56665 5665654432 23343332222 3344444
Q ss_pred HHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh-cCCccccCCCCc----c-------------cc
Q 012785 324 SQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK-SGLFSVPELPSQ----F-------------CT 385 (456)
Q Consensus 324 ~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~g~----~-------------~~ 385 (456)
...+...+++.+.. +.-....+++.++.+.+++.|++ ++++.+..+... + |-
T Consensus 401 ~iaal~aA~~~l~~----------~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~ 470 (730)
T 1c4k_A 401 MYAALDVNAAMQEG----------EAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYW 470 (730)
T ss_dssp HHHHHHHHHHHHSH----------HHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGG
T ss_pred HHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhh
Confidence 44443344442211 12233455666777778888877 555555433210 0 00
Q ss_pred ccc--------ccCCCCCce-----EEeecC-------------ccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC
Q 012785 386 FLG--------RAFEPQPAF-----AWLKCE-------------QEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD 439 (456)
Q Consensus 386 ~~~--------~~~~~~~~f-----~~~~~~-------------~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~ 439 (456)
.+. ...+...++ +.+..+ .+...+.+.|+++||.+... +...+|++++.
T Consensus 471 ~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~-----~~~~ir~~~s~ 545 (730)
T 1c4k_A 471 RFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKS-----DLNSILFLMTP 545 (730)
T ss_dssp BCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEE-----CSSEEEEECCT
T ss_pred ccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEEC-----CCCeEEEEeCC
Confidence 000 000011011 344443 14677888999999988752 36788999875
Q ss_pred --ChhHHHHHHHHHHhhh
Q 012785 440 --RDENYNLFVQRLSKIL 455 (456)
Q Consensus 440 --~~e~i~~~l~~L~~~l 455 (456)
++++++.+++.|+++.
T Consensus 546 g~t~e~i~~Ll~aL~~i~ 563 (730)
T 1c4k_A 546 AETPAKMNNLITQLLQLQ 563 (730)
T ss_dssp TCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 8899999999998764
No 220
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.76 E-value=1.7e-16 Score=162.13 Aligned_cols=258 Identities=13% Similarity=0.088 Sum_probs=163.4
Q ss_pred EEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh--------hhhhcCC--eEeeec-------cCcccccc-
Q 012785 166 IVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS--------ITDCVKS--RLYKWA-------GDAKRFNK- 227 (456)
Q Consensus 166 I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~--------~~~~~g~--~~~~~~-------~d~~~l~~- 227 (456)
.++++++++++.+++.+++++|| +|++++|.|.++.. .+...|. +.+.++ +|.+.++.
T Consensus 123 ~v~~~sGt~An~~al~al~~pGD----~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~ 198 (490)
T 2a7v_A 123 NVQPYSGSPANLAVYTALLQPHD----RIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALT 198 (490)
T ss_dssp ECCCSSHHHHHHHHHHHHCCSCE----ECCC-------------------------------CCBCTTTCSBCHHHHHHH
T ss_pred EEeCCchHHHHHHHHHHHcCCCC----EecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHH
Confidence 34566778999999999999999 99999999865431 1233443 233333 34444432
Q ss_pred ---CCCeEEEEcCCCCCCcccch---HHhhhcCcEEEeeecCC-C---CC--CCCCCCCCCCcEEEecCccccCCCCceE
Q 012785 228 ---DGPYIELVTSPNNPDGSVRQ---SVVNRSGGILVHDLAYY-W---PQ--YTSITYPADHDLMLFTVSKSTGHAGTRI 295 (456)
Q Consensus 228 ---~~~~~i~v~~P~NPtG~~~~---~l~~~~~~~iI~De~y~-~---~~--~~~~~~~~~~~i~i~S~SK~~g~~G~Ri 295 (456)
.++++|+++.|+||+..-+. ++|+++|+++++|+++. + .+ ..++ ..-+++++|+||++ .|.|.
T Consensus 199 l~~~~~klIi~~~s~~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~---~~aDiv~~S~hK~l--~Gp~G 273 (490)
T 2a7v_A 199 ARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPF---KHADIVTTTTHKTL--RGARS 273 (490)
T ss_dssp HHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGG---GTCSEEEEESSGGG--CSCSC
T ss_pred HhhcCCcEEEEcCCCCCCcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCC---CCCCEEEECCcccC--ccccc
Confidence 36789999999999865555 48999999999999975 1 11 1222 13469999999987 45678
Q ss_pred EEEEEeCH--------------HHHHHHHHHHhhccCcCChHH-HHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHH
Q 012785 296 GWALVKDM--------------EVAKKMTKYIELNTIGVSKDS-QLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTR 360 (456)
Q Consensus 296 G~l~~~~~--------------~~~~~l~~~~~~~~~~~s~~~-q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 360 (456)
|+++++++ ++.+++++.......+.+... ..++..++.... .+.++...+++.++
T Consensus 274 G~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~----------~~~~~~~~~~~~~n 343 (490)
T 2a7v_A 274 GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQAC----------TPMFREYSLQVLKN 343 (490)
T ss_dssp EEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHH----------SHHHHHHHHHHHHH
T ss_pred hheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHh----------hhhHHHHHHHHHHH
Confidence 99999843 366777666443333333333 333333444221 12346677888899
Q ss_pred HHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCCC----CCCCeE
Q 012785 361 WKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHFG----FSPKYV 433 (456)
Q Consensus 361 ~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~fg----~~~~~i 433 (456)
++.+.+.|.+.+ +.+..+. ..++++|+++.. +.+.+.+.|+++||.+..+..++ ..+..|
T Consensus 344 a~~L~~~L~~~G-~~v~~~~------------t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~i 410 (490)
T 2a7v_A 344 ARAMADALLERG-YSLVSGG------------TDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGL 410 (490)
T ss_dssp HHHHHHHHHHTT-CEEGGGS------------CSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEE
T ss_pred HHHHHHHHHHcC-cEEecCC------------CCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCCCCCCCCCce
Confidence 999999999875 4443211 112368888753 46778899999999998654443 245789
Q ss_pred EEEec------CChhHHHHHHHHHHhhh
Q 012785 434 RISML------DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 434 Ris~~------~~~e~i~~~l~~L~~~l 455 (456)
||+.. .++++++++++.|.+++
T Consensus 411 Rig~~a~t~~g~~~~d~~~~~~~i~~~l 438 (490)
T 2a7v_A 411 RLGAPALTSRQFREDDFRRVVDFIDEGV 438 (490)
T ss_dssp EEESHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred EecccccccCCCCHHHHHHHHHHHHHHH
Confidence 99753 27899999999988775
No 221
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.75 E-value=3.7e-17 Score=169.27 Aligned_cols=285 Identities=13% Similarity=0.078 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHH-HhcCccCCCceEEEccCHHHHHHHHHHHhc-------C-CCCC--CCcEEEEeCCCCCChhhhhhhc
Q 012785 143 PEFAKEVVRLHK-VVGNAITENHHIVVGTGSTQLFQAALYALS-------S-QDAS--EPISVVSAAPYYSSYPSITDCV 211 (456)
Q Consensus 143 ~~lr~aia~~~~-~~g~~~~~~~~I~~t~G~~~al~~~~~~l~-------~-~gd~--~~~~Vlv~~P~y~~~~~~~~~~ 211 (456)
.++++.+.+++. ..|.+ ++++++|+|+++++..++.++. + +|+. .+.+|+++.+.|+.+...++..
T Consensus 147 ~~le~~~~~~la~l~g~~---~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~ 223 (515)
T 2jis_A 147 VLMEEEVLRKLRALVGWS---SGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFL 223 (515)
T ss_dssp HHHHHHHHHHHHHHHTCS---SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCC---CCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHc
Confidence 455555555552 23433 4689999999999998888763 1 3431 0116889999999999999988
Q ss_pred CC---eEeeeccC------cccccc----C-----CCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC
Q 012785 212 KS---RLYKWAGD------AKRFNK----D-----GPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY 268 (456)
Q Consensus 212 g~---~~~~~~~d------~~~l~~----~-----~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~ 268 (456)
|. +++.++.| .+.++. . ++++|++++|+||||.+.+ ++|+++|+++++|++|.+...
T Consensus 224 g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~ 303 (515)
T 2jis_A 224 GLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVL 303 (515)
T ss_dssp TSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGG
T ss_pred CCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHH
Confidence 88 77776654 334432 1 3788999999999999876 489999999999999985322
Q ss_pred C-----C-CCCCCCCcEEEecCccccCCCCceEEEEEEeCH-HHHHHH----HHHHhh--c------cC---------cC
Q 012785 269 T-----S-ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDM-EVAKKM----TKYIEL--N------TI---------GV 320 (456)
Q Consensus 269 ~-----~-~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~-~~~~~l----~~~~~~--~------~~---------~~ 320 (456)
. . +....+-++++.|++|.++.| .++|+++++++ ++.++. ..+... . .. ..
T Consensus 304 ~~~~~~~~~~g~~~aD~v~~s~hK~l~~p-~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~ 382 (515)
T 2jis_A 304 LSQTHRHLLDGIQRADSVAWNPHKLLAAG-LQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRV 382 (515)
T ss_dssp GCTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCC
T ss_pred hChhhHhhcCCCccCCEEEECcccccCCC-CCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcc
Confidence 1 1 111224579999999998744 67999999855 465542 111100 0 00 11
Q ss_pred ChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEe
Q 012785 321 SKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWL 400 (456)
Q Consensus 321 s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~ 400 (456)
..+.+.++.+.+. .+.+++..++..++++++.+.|++.+++++..+... +++.+.
T Consensus 383 ~al~~~~~l~~lg-------------~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~------------~~v~f~ 437 (515)
T 2jis_A 383 DCLKLWLMWKAQG-------------DQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEF------------VNVCFW 437 (515)
T ss_dssp CHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSS------------SEEEEE
T ss_pred cHHHHHHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCe------------eEEEEE
Confidence 2344555555444 345677888888999999999998866665543211 113332
Q ss_pred ecCc---------c-H-------HHHHHHHHhCCEEeecCCCCCCCCCeEEEEec---CChhHHHHHHHHHHhhhC
Q 012785 401 KCEQ---------E-I-------EDCESFLKGNKILTRSGKHFGFSPKYVRISML---DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 401 ~~~~---------~-~-------~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~---~~~e~i~~~l~~L~~~l~ 456 (456)
..+. + . ..+.+.+.+.|+............+++|++++ .++++++.++++|+++++
T Consensus 438 ~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~ 513 (515)
T 2jis_A 438 FVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQ 513 (515)
T ss_dssp ECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred EeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 2221 1 0 12455666777654321111112468999994 489999999999998753
No 222
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.72 E-value=2.6e-17 Score=166.80 Aligned_cols=261 Identities=11% Similarity=0.036 Sum_probs=171.2
Q ss_pred CceEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhcCCe--------------EeeeccC------
Q 012785 163 NHHIVVGTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCVKSR--------------LYKWAGD------ 221 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~--------------~~~~~~d------ 221 (456)
.+.++++++++||++.+++.... .+.. +|+...-+|++....+...... +..++..
T Consensus 125 ~~~v~f~~sGsEA~e~AlklAr~~t~r~---~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~ 201 (456)
T 4atq_A 125 AKRTVLFNSGAEAVENAVKVARLATGRD---AVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREE 201 (456)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHCCC---EEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCS
T ss_pred CcEEEEeCChHHHHHHHHHHHhhhhcCC---eEEEEecccCCccccccccccCccccccCCCCccccceecccccccccC
Confidence 35799999999999999987633 2222 8999999999987655433211 1111110
Q ss_pred ------cccc-------c----cCCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCCCC-
Q 012785 222 ------AKRF-------N----KDGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSITYP- 274 (456)
Q Consensus 222 ------~~~l-------~----~~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~~~- 274 (456)
.+.. + ..++.++++..-+.-.|.+.+ ++|+++|+++|.||++.+...++....
T Consensus 202 ~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~ 281 (456)
T 4atq_A 202 NPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAV 281 (456)
T ss_dssp STTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG
T ss_pred CCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccc
Confidence 0100 1 124567777554666676654 389999999999999997655543211
Q ss_pred ----CCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHH
Q 012785 275 ----ADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFF 350 (456)
Q Consensus 275 ----~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l 350 (456)
-..+|+ +++|.+| .|+.+|.+++. +++.+.+.......|++.++++..++.+.|+.+++. +.+
T Consensus 282 e~~gv~PDiv--t~gK~lg-gg~P~~av~~~-~~i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~~~---------~l~ 348 (456)
T 4atq_A 282 DHEGVVPDII--TMAKGIA-GGLPLSAITGR-ADLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQH---------DLN 348 (456)
T ss_dssp GGTTCCCSEE--EECGGGG-TTSSCEEEEEE-HHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHT---------THH
T ss_pred cccCCCCchh--hhhhccc-CcCCceeeEec-HHHHhcccccCCCCCCCCChHHHHhhHHHHHHHhhc---------cHH
Confidence 123444 5789998 99999999997 899888877767789999999999999999977653 233
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC-----CccccCCCCcccccccccCCCCCceEEeecCc---------cHHHHHHHHHhC
Q 012785 351 EFTNHQMSTRWKQLRMAVQKSG-----LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---------EIEDCESFLKGN 416 (456)
Q Consensus 351 ~~~~~~~~~~~~~l~~~L~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---------~~~~~~~~l~~~ 416 (456)
++.++.-+..++.|.+..++.+ .+.-.+..|. ++-+++.. ....+...+.++
T Consensus 349 ~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl--------------~~giel~~~~~~~~~~~~~~~v~~~~~~~ 414 (456)
T 4atq_A 349 GRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGA--------------MLAIELVQPGSKEPNAELTKAVAAACLKE 414 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETT--------------EEEEEEBCTTSCCBCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecce--------------EEEEEEecCCCCCcCHHHHHHHHHHHHHC
Confidence 3333333333333344333322 1222233343 34555421 134577888899
Q ss_pred CEEeecCCCCCCCCCeEEEEe--cCChhHHHHHHHHHHhhhC
Q 012785 417 KILTRSGKHFGFSPKYVRISM--LDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 417 gI~v~pg~~fg~~~~~iRis~--~~~~e~i~~~l~~L~~~l~ 456 (456)
||++.++. ...+.|||.- ..+++++++++++|.+.|+
T Consensus 415 Gvl~~~~g---~~~~~irl~PpL~it~~~id~~l~~l~~al~ 453 (456)
T 4atq_A 415 GVIILTCG---TYGNVIRLLPPLVISDELLIDGLEVLAAAIK 453 (456)
T ss_dssp TEECEEEC---TTSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEecC---CCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 99998743 3357899884 3489999999999998763
No 223
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.72 E-value=1.4e-16 Score=160.87 Aligned_cols=206 Identities=12% Similarity=0.016 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeC-CCCCChhhhh----------hhc
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAA-PYYSSYPSIT----------DCV 211 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~-P~y~~~~~~~----------~~~ 211 (456)
.++++.++++++. ... ..+++++ ++++++..++.+++++|| +|++++ |.|..+...+ +..
T Consensus 68 ~~l~~~la~~~g~---~~~-~~~i~~~-sGt~Ai~~al~al~~~Gd----~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~ 138 (431)
T 3ht4_A 68 DTLEKVYADVFGA---EAG-LVRPQII-SGTHAISTALFGILRPGD----ELLYITGKPYDTLEEIVGVRGKGVGSFKEY 138 (431)
T ss_dssp HHHHHHHHHHTTC---SEE-CCBTTSC-SHHHHHHHHHHTTCCTTC----EEEECSSSCCTTHHHHTTSSSCSSSCSGGG
T ss_pred HHHHHHHHHHhCC---Ccc-cccceee-CHHHHHHHHHHHhCCCCC----EEEEeCCCCchhHHHHHhhcccccchHHHc
Confidence 4555555555532 211 1133355 568999999999999999 999998 9999988554 457
Q ss_pred CCeEeeecc------Ccccccc---CCCeEEEEc-CCCCCCcccch--------HHhhh--cCcEEEeeecCCCCCCCCC
Q 012785 212 KSRLYKWAG------DAKRFNK---DGPYIELVT-SPNNPDGSVRQ--------SVVNR--SGGILVHDLAYYWPQYTSI 271 (456)
Q Consensus 212 g~~~~~~~~------d~~~l~~---~~~~~i~v~-~P~NPtG~~~~--------~l~~~--~~~~iI~De~y~~~~~~~~ 271 (456)
|++++.++. |.+.++. .++++|+++ +||||+|...+ ++|++ +|+++|+||+|....+..-
T Consensus 139 G~~~~~v~~~~~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~ 218 (431)
T 3ht4_A 139 NIGYNAVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQE 218 (431)
T ss_dssp TCEEEECCBCTTSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCC
T ss_pred CCEEEEeCCCCCCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCC
Confidence 888887776 4455543 367899888 59999999876 37899 9999999999986543222
Q ss_pred CCCCCCcEEEecCccccCC-CCceEEEEEEeCHHHHHHHHHHHhhccC----cCChHHHHHHHHHHHhhhCCCCCCCCcc
Q 012785 272 TYPADHDLMLFTVSKSTGH-AGTRIGWALVKDMEVAKKMTKYIELNTI----GVSKDSQLRAAKVLKVVSDSCKPSGSED 346 (456)
Q Consensus 272 ~~~~~~~i~i~S~SK~~g~-~G~RiG~l~~~~~~~~~~l~~~~~~~~~----~~s~~~q~~a~~~L~~~~~~~~~~~~~~ 346 (456)
+...+.+++++|+||.+|. .+...||++++ +++++.++........ +.+...+.++...+.
T Consensus 219 ~~~~g~Di~~~S~sK~lgg~~~~~GG~v~~~-~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~------------- 284 (431)
T 3ht4_A 219 PCHVGADLMAGSLIKNPGGGIVKTGGYIVGK-EQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFF------------- 284 (431)
T ss_dssp GGGTTCSEEEEETTSGGGTTTCSSCEEEEEC-HHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHH-------------
T ss_pred ccccCCeEEEcCccccCCCCCCCceEEEEec-HHHHHHHHHHhccCCcccccCccHHHHHHHHhHhh-------------
Confidence 2223457999999999752 22344999996 9999998876543222 222222333344333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012785 347 ECFFEFTNHQMSTRWKQLRMAVQKSGL 373 (456)
Q Consensus 347 ~~~l~~~~~~~~~~~~~l~~~L~~~~~ 373 (456)
.+...+++..++.+.+.+.|++++.
T Consensus 285 --~~~~~~~~~~~~a~~l~~~L~~~g~ 309 (431)
T 3ht4_A 285 --LAPHVAGQALKGAIFTAAFLEKLGM 309 (431)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred --hHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 2345567778888899999998763
No 224
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.71 E-value=1.5e-17 Score=167.82 Aligned_cols=267 Identities=13% Similarity=0.034 Sum_probs=173.6
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhhcC------C
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCVK------S 213 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~~g------~ 213 (456)
..+|.+.|++++. ..+.+.++++++||...+++.... ..+ +|+..+-+|++....+.... .
T Consensus 129 ~~~lae~l~~~~p-------~~~~v~f~~SGsEA~e~AiklAr~~tgr~----~ii~~~~~yHG~t~~~~~~~~~~~~~~ 197 (454)
T 4ao9_A 129 EGRLARLICERFP-------QIEQLRFTNSGTEANLMALTAALHFTGRR----KIVVFSGGYHGGVLGFGARPSPTTVPF 197 (454)
T ss_dssp HHHHHHHHHHHST-------TCSEEEEESSHHHHHHHHHHHHHHHHTCC----EEEEETTCBCSTTCBBSSSBCTTSCCS
T ss_pred HHHHHHHHHHhCC-------CCCEEEEeCchHHHHHHHHHHHHhcccCC----eEEEEeCCcCCccccccccccCccCCC
Confidence 3677777777663 246899999999999999987743 223 89999999998665433221 1
Q ss_pred eEeeecc-Ccccccc------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCCC----
Q 012785 214 RLYKWAG-DAKRFNK------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSITY---- 273 (456)
Q Consensus 214 ~~~~~~~-d~~~l~~------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~~---- 273 (456)
....++. |.+.++. .++.+|++...+.-.|.+.+ ++|+++|+++|.||++.+ .++...
T Consensus 198 ~~~~~p~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG--R~G~~~a~e~ 275 (454)
T 4ao9_A 198 DFLVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RLAPHGLANK 275 (454)
T ss_dssp EEEEECTTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--GGSTTCHHHH
T ss_pred CcccCCCchHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--CCccccchhc
Confidence 1122222 4444332 24566777544666787765 389999999999999974 222111
Q ss_pred -CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHH----HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchh
Q 012785 274 -PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKY----IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDEC 348 (456)
Q Consensus 274 -~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~----~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~ 348 (456)
.-..+| .+++|.+| .|+.+|.+++. +++++.+... ....|++.++++..++.+.|+.+.+ ++
T Consensus 276 ~gv~PDi--~t~gK~lg-gG~Piga~~~~-~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~---------~~ 342 (454)
T 4ao9_A 276 LGIRSDL--TTLGKYIG-GGMSFGAFGGR-ADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFT---------PE 342 (454)
T ss_dssp HTCCCSE--EEEEGGGG-TTSSCEEEEEC-HHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSC---------HH
T ss_pred cCCCCcE--EEeccccC-CCCcceeeeeH-HHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhc---------cC
Confidence 112234 46899999 89999999997 8888877542 2345788999999999999986643 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeec-C-----------cc---HHHHHHHH
Q 012785 349 FFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKC-E-----------QE---IEDCESFL 413 (456)
Q Consensus 349 ~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~-~-----------~~---~~~~~~~l 413 (456)
.+++..+.-+..++.|.+.+++.+.....+..|.+ +.+.+ + .+ ...+...+
T Consensus 343 ~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m--------------~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l 408 (454)
T 4ao9_A 343 AAGALAERGEALRARLNALCANEGVAMQFTGIGSL--------------MNAHFVQGDVRSSEDLAAVDGRLRQLLFFHL 408 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTE--------------EEEESCCSCCCSGGGGTTCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceE--------------EEEEEecCCCCCHHHHHhhhHHHHHHHHHHH
Confidence 44444444444444444444444433233334444 22222 0 01 23455677
Q ss_pred HhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 414 KGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 414 ~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
.++||++.| .+++.++...+++++++++++|+++|
T Consensus 409 l~~Gv~~~p-------~~~~~~s~~~T~~dId~~l~al~~~l 443 (454)
T 4ao9_A 409 LNEDIYSSP-------RGFVVLSLPLTDADIDRYVAAIGSFI 443 (454)
T ss_dssp HHTTEECCT-------TCEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred HHCCEEEcC-------CCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 899999987 34556666569999999999999886
No 225
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.69 E-value=1.5e-15 Score=163.11 Aligned_cols=285 Identities=10% Similarity=0.013 Sum_probs=176.8
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG- 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~- 220 (456)
..++++.++++++. ++.+++++|+++++..++.+++++|| +|+++.|+|..+...+...|++++.++.
T Consensus 207 v~~~ee~la~l~G~-------d~~i~~~~Gtt~a~~~~i~al~~~GD----~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~ 275 (755)
T 2vyc_A 207 FGESEKYAARVFGA-------DRSWSVVVGTSGSNRTIMQACMTDND----VVVVDRNCHKSIEQGLMLTGAKPVYMVPS 275 (755)
T ss_dssp HHHHHHHHHHHHTC-------SEEEEESSHHHHHHHHHHHHHCCTTC----EEEEESSCCHHHHHHHHHHCCEEEEECCC
T ss_pred HHHHHHHHHHHhCC-------CceEEECCcHHHHHHHHHHHhcCCCC----EEEECCCchHHHHHHHHHcCCEEEEEeCC
Confidence 35777777777763 35688999999999999999999999 9999999999998889999999876653
Q ss_pred ---------------Ccccccc-----CCC--------eEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC-
Q 012785 221 ---------------DAKRFNK-----DGP--------YIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP- 266 (456)
Q Consensus 221 ---------------d~~~l~~-----~~~--------~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~- 266 (456)
|.+.++. .++ +++++++| ||+|.+.+ ++|+++++++|+|++|...
T Consensus 276 ~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~ 354 (755)
T 2vyc_A 276 RNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYA 354 (755)
T ss_dssp BCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTG
T ss_pred CCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchhc
Confidence 3333322 123 38888898 79999977 4899999999999999731
Q ss_pred ----C---CCCCC----C-CCCCcEEEecCccccCCCCce-EEEEEEeCH--HH-HHHHHHHHh-hccCcCChHHHHHHH
Q 012785 267 ----Q---YTSIT----Y-PADHDLMLFTVSKSTGHAGTR-IGWALVKDM--EV-AKKMTKYIE-LNTIGVSKDSQLRAA 329 (456)
Q Consensus 267 ----~---~~~~~----~-~~~~~i~i~S~SK~~g~~G~R-iG~l~~~~~--~~-~~~l~~~~~-~~~~~~s~~~q~~a~ 329 (456)
. ..++. + ..+++|++.|+||++ +|.+ .|+++++++ .+ ..++..... ..+.+++.+...+..
T Consensus 355 ~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L--~g~~~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~~~iaal~ 432 (755)
T 2vyc_A 355 RFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASND 432 (755)
T ss_dssp GGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSS--SCCTTCEEEEEECCBTCCCHHHHHHHHHHTSCSSCCHHHHHHHH
T ss_pred ccCcccCCcchhcCCcCCccCCCeEEEECccccc--cCcCCeeeeeecCcccccCHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1 11211 1 123567999999975 5666 577777633 12 233433322 223444555444444
Q ss_pred HHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCC---------ccccCCCCc-------c----------
Q 012785 330 KVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGL---------FSVPELPSQ-------F---------- 383 (456)
Q Consensus 330 ~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~---------~~~~~~~g~-------~---------- 383 (456)
++++.+... ..++++++..+..+. +++.|+++++ +.+..+... .
T Consensus 433 aA~~~l~~~------gg~~~~~~~~~~a~~----~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (755)
T 2vyc_A 433 VAVSMMDGN------SGLSLTQEVIDEAVD----FRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKL 502 (755)
T ss_dssp HHHHHHSTH------HHHHHHHHHHHHHHH----HHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHH
T ss_pred HHHHHHHhh------hHHHHHHHHHHHHHH----HHHHHHhccccccccccceeeccCchhccccccccccccccccchh
Confidence 445433221 013444444444444 4444443322 222221100 0
Q ss_pred ---------------cccccccCCC----CCceEEeecCc------------cHHHHHHHHHhCCEEeecCCCCCCCCCe
Q 012785 384 ---------------CTFLGRAFEP----QPAFAWLKCEQ------------EIEDCESFLKGNKILTRSGKHFGFSPKY 432 (456)
Q Consensus 384 ---------------~~~~~~~~~~----~~~f~~~~~~~------------~~~~~~~~l~~~gI~v~pg~~fg~~~~~ 432 (456)
..-|..+... .+.-+.+.+++ +...+.+.|+++||.+... +.+.
T Consensus 503 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~~-----~~~~ 577 (755)
T 2vyc_A 503 LTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRT-----TDFQ 577 (755)
T ss_dssp HHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSEE-----CSSE
T ss_pred ccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEeec-----CCCe
Confidence 0000000000 11223444442 2367888898999887542 4788
Q ss_pred EEEEecC--ChhHHHHHHHHHHhhh
Q 012785 433 VRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 433 iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+|++++. ++++++.+++.|+++.
T Consensus 578 v~~~~~~g~t~~~~~~l~~al~~~~ 602 (755)
T 2vyc_A 578 IMFLFSMGVTRGKWGTLVNTLCSFK 602 (755)
T ss_dssp EEEECCTTCCTTTTHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHH
Confidence 9999875 8899999999988763
No 226
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.68 E-value=6.8e-16 Score=158.32 Aligned_cols=288 Identities=11% Similarity=-0.029 Sum_probs=195.4
Q ss_pred cccCCCCcccCCCHHHHHHHHHHHH-HhcCccCC-------CceEEEccCHHHHHHHHHHHhcC----------------
Q 012785 130 YFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAITE-------NHHIVVGTGSTQLFQAALYALSS---------------- 185 (456)
Q Consensus 130 ~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~-------~~~I~~t~G~~~al~~~~~~l~~---------------- 185 (456)
.|....+ ..++++.+++|+. .+|.+... ....++|+|+++++..++.+...
T Consensus 109 ~~~~~p~-----~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~ 183 (481)
T 4e1o_A 109 TWASSPA-----CTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADES 183 (481)
T ss_dssp STTTCHH-----HHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHH
T ss_pred CcCCCcH-----HHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccc
Confidence 3544444 3799999999985 45665321 12678999999999888877643
Q ss_pred ---CCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc------CccccccC---------CCeEEEEcCCCCCCcccch
Q 012785 186 ---QDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG------DAKRFNKD---------GPYIELVTSPNNPDGSVRQ 247 (456)
Q Consensus 186 ---~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~------d~~~l~~~---------~~~~i~v~~P~NPtG~~~~ 247 (456)
+++ .|++++++|..+...++..|.+++.++. |.+.++.. .+.+++++.++|+||.+-+
T Consensus 184 ~~~~~~----~v~~s~~~H~s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~ 259 (481)
T 4e1o_A 184 SLNARL----VAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC 259 (481)
T ss_dssp HHHTTE----EEEEETTSCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC
T ss_pred cccCCe----EEEEcCcchHHHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC
Confidence 345 8999999999999999999999887775 44444321 1567888889999998855
Q ss_pred -----HHhhhcCcEEEeeecCCCCC-----CCCCCCC-CCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHH-hh
Q 012785 248 -----SVVNRSGGILVHDLAYYWPQ-----YTSITYP-ADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI-EL 315 (456)
Q Consensus 248 -----~l~~~~~~~iI~De~y~~~~-----~~~~~~~-~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~-~~ 315 (456)
++|+++|+++++|.+|.... +...... ..-+.+..+.+|.++.| .-+|++++.+++......... ..
T Consensus 260 l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p-~g~g~l~~~~~~~l~~~~~~~~~y 338 (481)
T 4e1o_A 260 LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVH-FDCTGFWVKDKYKLQQTFSVNPIY 338 (481)
T ss_dssp HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESBHHHHHTTTCCCCGG
T ss_pred HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCC-CceEEEEEeCHHHHHHHhcCCchh
Confidence 48999999999999998521 1111111 12367888999988755 457888887666543211100 00
Q ss_pred c------------------cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 012785 316 N------------------TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVP 377 (456)
Q Consensus 316 ~------------------~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~ 377 (456)
. +.....+.+.++...+. .+.++++.++..++++++.+.|++.+++++.
T Consensus 339 l~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g-------------~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~ 405 (481)
T 4e1o_A 339 LRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFG-------------VKNLQAHVRHGTEMAKYFESLVRNDPSFEIP 405 (481)
T ss_dssp GCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHTCTTEECC
T ss_pred ccCcccCCCCCcccccccCCCCccHHHHHHHHHHhH-------------HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence 0 00113455555555554 4567788888999999999999998777765
Q ss_pred CCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCE-EeecCCCCCCCCCeEEEEecC---ChhHHHHHHHH
Q 012785 378 ELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKI-LTRSGKHFGFSPKYVRISMLD---RDENYNLFVQR 450 (456)
Q Consensus 378 ~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI-~v~pg~~fg~~~~~iRis~~~---~~e~i~~~l~~ 450 (456)
.+... +++++.+++ ....+.+.+.++|+ .+.|+... +..++|+++.. +++++++++++
T Consensus 406 ~~~~~-------------~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~--g~~~lR~~~~~~~tt~~di~~~~~~ 470 (481)
T 4e1o_A 406 AKRHL-------------GLVVFRLKGPNSLTENVLKEIAKAGRLFLIPATIQ--DKLIIRFTVTSQFTTRDDILRDWNL 470 (481)
T ss_dssp SCCCS-------------SEEEEEESSCHHHHHHHHHHHHHHCSSBCEEEEET--TEEEEEEECCCTTCCHHHHHHHHHH
T ss_pred cCCce-------------eEEEEEeCCchHHHHHHHHHHHhCCeEEEEeeEEC--CEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 43322 267777753 24556677777774 44443332 35689999764 67899999999
Q ss_pred HHhhh
Q 012785 451 LSKIL 455 (456)
Q Consensus 451 L~~~l 455 (456)
|++++
T Consensus 471 i~~~~ 475 (481)
T 4e1o_A 471 IRDAA 475 (481)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 227
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.68 E-value=6.3e-15 Score=144.93 Aligned_cols=275 Identities=9% Similarity=0.056 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEE-ccCHHHHHHHHHHHhcCCCCCCCcEE-EEeCCCCC-ChhhhhhhcCCeEeeec
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVV-GTGSTQLFQAALYALSSQDASEPISV-VSAAPYYS-SYPSITDCVKSRLYKWA 219 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~-t~G~~~al~~~~~~l~~~gd~~~~~V-lv~~P~y~-~~~~~~~~~g~~~~~~~ 219 (456)
.+.|+.++++++. .++++|++ |.|+|+++++++..+. ++| ++ .+..-.|. .....++..|+++..++
T Consensus 53 ~~~r~~la~ll~~-----~~~~~v~f~t~~~T~a~n~~~~~~~-~~~----~~~~i~~~~~~~~~~~~a~~~G~~v~~~~ 122 (361)
T 3m5u_A 53 FGAQEKAKKLYEL-----NDDYEVLFLQGGASLQFAMIPMNLA-LNG----VCEYANTGVWTKKAIKEAQILGVNVKTVA 122 (361)
T ss_dssp HHHHHHHHHHHTC-----CTTEEEEEESSHHHHHHHHHHHHHC-CSS----CEEEEECSHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHhCC-----CCCceEEEEcCcHHHHHHHHHHhcC-CCC----eEEEEeCCHHHHHHHHHHHHcCCceEEEe
Confidence 4556666776653 12457887 9999999999999988 777 54 23332332 23344566788877665
Q ss_pred cCccc---cc-----cCCCeEEEEcCCCCCCcccchHHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCccccCCC
Q 012785 220 GDAKR---FN-----KDGPYIELVTSPNNPDGSVRQSVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHA 291 (456)
Q Consensus 220 ~d~~~---l~-----~~~~~~i~v~~P~NPtG~~~~~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g~~ 291 (456)
.|.++ +. ..++++|.+++..|.||...+++++. |+++++|.++.-.+ .++. ..+-++++.|-.|.+|.+
T Consensus 123 ~~~~g~~~~~~~~~l~~~t~lv~~~~~e~~tG~~~~~i~~~-~~~~~vD~~q~~g~-~~id-~~~~d~~~~s~~K~~gp~ 199 (361)
T 3m5u_A 123 SSEESNFDHIPRVEFSDNADYAYICSNNTIYGTQYQNYPKT-KTPLIVDASSDFFS-RKVD-FSNIALFYGGVQKNAGIS 199 (361)
T ss_dssp ECTTTTSCSCCCCCCCTTSSEEEEESEETTTTEECSSCCCC-SSCEEEECGGGTTS-SCCC-CTTEEEEEEETTTTSSCT
T ss_pred cccCcCCCcCChhhcCCCCCEEEEeCCCCCcceeCCccccc-CCEEEEEcccccCC-CCCC-cccCCEEEEechhccCCC
Confidence 54433 11 23578888887788889998877765 99999999887432 2221 113468899999999988
Q ss_pred CceEEEEEEeCHHHHHHHHH--------HH----hhccCc-CChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHH
Q 012785 292 GTRIGWALVKDMEVAKKMTK--------YI----ELNTIG-VSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMS 358 (456)
Q Consensus 292 G~RiG~l~~~~~~~~~~l~~--------~~----~~~~~~-~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~ 358 (456)
| +|+++++ +++.+++.. +. .....+ ++.....++.++|+.+.+. .-++...++.+
T Consensus 200 G--~g~l~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~---------gG~~~i~~~~~ 267 (361)
T 3m5u_A 200 G--LSCIFIR-KDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQ---------GGLDKVHEKNS 267 (361)
T ss_dssp T--CEEEEEE-HHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTT---------TCHHHHHHHHH
T ss_pred c--cEEEEEc-HHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHc---------cCHHHHHHHHH
Confidence 8 7999997 888776643 11 111223 4555555666667644321 02677888889
Q ss_pred HHHHHHHHHHHhcCCc-cccCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCCCCCCCeEE
Q 012785 359 TRWKQLRMAVQKSGLF-SVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHFGFSPKYVR 434 (456)
Q Consensus 359 ~~~~~l~~~L~~~~~~-~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~fg~~~~~iR 434 (456)
+..+++++.|++++++ ....+.. . ..+..+-+.+++ -.+.+...|.++||.+++|... .+.+|
T Consensus 268 ~l~~~l~~~L~~~~g~~~~~~~~~-~---------rs~~ivsf~~~~~~~~~~~~~~~L~~~gI~~~~g~~~---~g~iR 334 (361)
T 3m5u_A 268 QKATMLYECIDLSNGFYKGHADKK-D---------RSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRI---LGGIR 334 (361)
T ss_dssp HHHHHHHHHHHTSTTSEEESSCGG-G---------BCSSEEEEEESSCTTHHHHHHHHHHHTTEECCBCCTT---TCSEE
T ss_pred HHHHHHHHHHHHCCCeeeccCCHH-H---------cCCeEEEEECCCchhhhHHHHHHHHHCCCEEecCCCc---cCeEE
Confidence 9999999999988744 3221111 0 011134445553 1246778888999999987542 24599
Q ss_pred EEecC--ChhHHHHHHHHHHhhh
Q 012785 435 ISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 435 is~~~--~~e~i~~~l~~L~~~l 455 (456)
+|+.. ++|+++.+++.|+++.
T Consensus 335 iS~~~~~t~edId~l~~al~~~~ 357 (361)
T 3m5u_A 335 ASIYNALNLDQVKTLCEFMKEFQ 357 (361)
T ss_dssp EECCTTSCHHHHHHHHHHHHHHH
T ss_pred EEccCCCCHHHHHHHHHHHHHHH
Confidence 99875 8999999999999875
No 228
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.68 E-value=2.2e-15 Score=153.23 Aligned_cols=256 Identities=11% Similarity=0.068 Sum_probs=166.9
Q ss_pred CceEEEccCHHHHHHHHHHHhcC----CCCCCCcEEEEeCCCCCChhhhhhhcCCeE--------------eeecc----
Q 012785 163 NHHIVVGTGSTQLFQAALYALSS----QDASEPISVVSAAPYYSSYPSITDCVKSRL--------------YKWAG---- 220 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~----~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~--------------~~~~~---- 220 (456)
-++|+++++++||++.+++.... .|.....+|+...-+|++....+....... +..+.
T Consensus 128 ~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~ 207 (473)
T 4e3q_A 128 SGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRY 207 (473)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHH
T ss_pred ccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCccccc
Confidence 35899999999999999987531 222112289999999999766554432211 11110
Q ss_pred -C----c--------cccc-------cCCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCC
Q 012785 221 -D----A--------KRFN-------KDGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSI 271 (456)
Q Consensus 221 -d----~--------~~l~-------~~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~ 271 (456)
+ . +.++ .++..++++..-+.-.|.+.+ ++|+++|+++|.||++.+.+.++.
T Consensus 208 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~ 287 (473)
T 4e3q_A 208 GEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGN 287 (473)
T ss_dssp SCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSS
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccc
Confidence 0 0 0011 113456666554665676655 389999999999999998665543
Q ss_pred CC-----CCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHHH-------hhccCcCChHHHHHHHHHHHhhhCC
Q 012785 272 TY-----PADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKYI-------ELNTIGVSKDSQLRAAKVLKVVSDS 338 (456)
Q Consensus 272 ~~-----~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~~-------~~~~~~~s~~~q~~a~~~L~~~~~~ 338 (456)
.. .-..+|+ +++|.++ .| +.+|.++++ +++.+.+.... +..|++.++++..++.+.|+.+.+.
T Consensus 288 ~fa~e~~gv~PDi~--t~~K~l~-gG~~Pl~av~~~-~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~ 363 (473)
T 4e3q_A 288 TWGCVTYDFTPDAI--ISSKNLT-AGFFPMGAVILG-PELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNE 363 (473)
T ss_dssp SCHHHHTTCCCSEE--EECGGGG-TTSSCCEEEEEC-HHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHS
T ss_pred hhHHHhcCCCCChH--Hhccccc-CCCCCccccccc-HHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhccc
Confidence 21 1223444 5899998 66 999999997 99998886542 3468899999999999999977653
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh---cCCccccCCCCcccccccccCCCCCceEEeecC----------c-
Q 012785 339 CKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK---SGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE----------Q- 404 (456)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~---~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~----------~- 404 (456)
..++ +.++.-+++.+.|++ .+.+.-.+..|.+ +-+++. .
T Consensus 364 ---------~l~~----~~~~~g~~l~~~L~~l~~~~~v~~vRG~Gl~--------------~gielv~~~~~~~~~~~~ 416 (473)
T 4e3q_A 364 ---------GLAE----NVRRLAPRFEERLKHIAERPNIGEYRGIGFM--------------WALEAVKDKASKTPFDGN 416 (473)
T ss_dssp ---------SHHH----HHHHHHHHHHHHHHHHTTSTTEEEEEEETTE--------------EEEEECSBTTTTBCCCGG
T ss_pred ---------cHHH----HHHHHHHHHHHHHHHHhcCCCeeEEeecceE--------------EEEEEecCcccccccccc
Confidence 2333 333444445554544 3333333334433 334331 0
Q ss_pred --cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 405 --EIEDCESFLKGNKILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 405 --~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
....+.+.+.++||+++|. .+.+|++ +..+++++++++++|.+.|
T Consensus 417 ~~~~~~~~~~~~~~Gll~~~~------g~~i~l~PPL~it~~eid~~~~~l~~al 465 (473)
T 4e3q_A 417 LSVSERIANTCTDLGLICRPL------GQSVVLCPPFILTEAQMDEMFDKLEKAL 465 (473)
T ss_dssp GCHHHHHHHHHHHTTEECEEE------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCcEEEec------CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 1456788889999999983 3578887 4358999999999998876
No 229
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.66 E-value=1.5e-15 Score=155.58 Aligned_cols=281 Identities=12% Similarity=0.014 Sum_probs=187.9
Q ss_pred CHHHHHHHHHHHH-HhcCccCC------CceEEEccCHHHHHHHHHHHhcC-------------------CCCCCCcEEE
Q 012785 142 EPEFAKEVVRLHK-VVGNAITE------NHHIVVGTGSTQLFQAALYALSS-------------------QDASEPISVV 195 (456)
Q Consensus 142 ~~~lr~aia~~~~-~~g~~~~~------~~~I~~t~G~~~al~~~~~~l~~-------------------~gd~~~~~Vl 195 (456)
..++++.+++|+. ..|.+... ....++|+|+++++..++.+... +++ .|+
T Consensus 111 ~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~----~vi 186 (475)
T 3k40_A 111 CTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKL----VGY 186 (475)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHE----EEE
T ss_pred HHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCe----EEE
Confidence 3789999999984 45654321 13688999999998888877632 234 799
Q ss_pred EeCCCCCChhhhhhhcCCeEeeeccC-----ccccccC---------CCeEEEEcCCCCCCcccch-----HHhhhcCcE
Q 012785 196 SAAPYYSSYPSITDCVKSRLYKWAGD-----AKRFNKD---------GPYIELVTSPNNPDGSVRQ-----SVVNRSGGI 256 (456)
Q Consensus 196 v~~P~y~~~~~~~~~~g~~~~~~~~d-----~~~l~~~---------~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~ 256 (456)
++.++|..+...++..|++++.++.| .+.++.. .+.+++++.++|+||.+-+ ++|+++|++
T Consensus 187 ~s~~~H~s~~~~~~~~g~~~~~v~~d~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~ 266 (475)
T 3k40_A 187 CSDQAHSSVERAGLLGGVKLRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLW 266 (475)
T ss_dssp EETTSCHHHHHHHHHHTCEEEEECCBTTBCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCE
T ss_pred ECCCchHHHHHHHHHcCCceEEEECCCCCcCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCe
Confidence 99999999999999999999887764 4444321 1567888899999999855 489999999
Q ss_pred EEeeecCCCCC-----CCCCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHHHH-HHHHH---HHhh-----------
Q 012785 257 LVHDLAYYWPQ-----YTSIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVA-KKMTK---YIEL----------- 315 (456)
Q Consensus 257 iI~De~y~~~~-----~~~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~-~~l~~---~~~~----------- 315 (456)
+++|.+|.... +.... ....-+.+..+++|.++.| ..+|++++.+++.. +.+.. +...
T Consensus 267 lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p-~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~ 345 (475)
T 3k40_A 267 IHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVN-FDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRH 345 (475)
T ss_dssp EEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESSGGGC------------------------
T ss_pred EEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCC-CceEEEEEeCHHHHHHHhcCCccccCCCcCCCCCCccc
Confidence 99999998521 11111 1112378889999988734 56899988765442 22211 1000
Q ss_pred ccCc----CChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccC
Q 012785 316 NTIG----VSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAF 391 (456)
Q Consensus 316 ~~~~----~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~ 391 (456)
.+.. ...+.+.++...+. .+.++++.++..++.+++.+.|++.+++++..+...
T Consensus 346 ~~~~~sr~~~~l~l~~al~~~g-------------~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~--------- 403 (475)
T 3k40_A 346 WQIPLGRRFRALKLWFVLRLYG-------------VENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINM--------- 403 (475)
T ss_dssp ---CCCGGGTHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBT---------
T ss_pred ccccCCCcccHHHHHHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCce---------
Confidence 0000 12344444444443 455778888899999999999999877776544322
Q ss_pred CCCCceEEeecCc---cHHHHHHHHHhCCE-EeecCCCCCCCCCeEEEEecC---ChhHHHHHHHHHHhhh
Q 012785 392 EPQPAFAWLKCEQ---EIEDCESFLKGNKI-LTRSGKHFGFSPKYVRISMLD---RDENYNLFVQRLSKIL 455 (456)
Q Consensus 392 ~~~~~f~~~~~~~---~~~~~~~~l~~~gI-~v~pg~~fg~~~~~iRis~~~---~~e~i~~~l~~L~~~l 455 (456)
+.+++.+++ ....+.+.+.++|+ .+.|+..+| ..++|++++. ++++++.++++|++++
T Consensus 404 ----~iv~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g--~~~lR~~~~~~~tt~~di~~~~~~i~~~~ 468 (475)
T 3k40_A 404 ----GLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIKD--VYFLRMAICSRFTQSEDMEYSWKEVSAAA 468 (475)
T ss_dssp ----TEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETT--EEEEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ----EEEEEEeCCchHHHHHHHHHHHhCCcEEEEeeEECC--EEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 256666643 24556666666665 455544333 6789999863 7899999999998864
No 230
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.62 E-value=3e-14 Score=140.64 Aligned_cols=277 Identities=12% Similarity=0.023 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEE-ccCHHHHHHHHHHHhcCC--CCCCCcEEEEeCCCCCC--hhhhhhhcCCeEee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVV-GTGSTQLFQAALYALSSQ--DASEPISVVSAAPYYSS--YPSITDCVKSRLYK 217 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~-t~G~~~al~~~~~~l~~~--gd~~~~~Vlv~~P~y~~--~~~~~~~~g~~~~~ 217 (456)
.+.|+.++++++. .++++|++ |.|+|+++++++..+..+ || +|++..-++.. +...++..|..++.
T Consensus 61 ~~ar~~la~ll~~-----~~~~evif~t~~~T~a~n~a~~~l~~~~~Gd----~v~~~~~g~~~~~~~~~a~~~G~~~~~ 131 (377)
T 3e77_A 61 NNTENLVRELLAV-----PDNYKVIFLQGGGCGQFSAVPLNLIGLKAGR----CADYVVTGAWSAKAAEEAKKFGTINIV 131 (377)
T ss_dssp HHHHHHHHHHHTC-----CTTEEEEEESSHHHHHHHHHHHHHGGGSTTC----EEEECCCSHHHHHHHHHHTTTSEEEEC
T ss_pred HHHHHHHHHHhCC-----CCCCeEEEEcCchHHHHHHHHHhccCCCCCC----eEEEEECCHHHHHHHHHHHHhCCceEE
Confidence 4556666666653 12357888 689999999999999865 88 88766554433 23345556766654
Q ss_pred eccC------cccccc---CCCeEEEEcCCCCCCcccchHHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEecCccc
Q 012785 218 WAGD------AKRFNK---DGPYIELVTSPNNPDGSVRQSVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLFTVSKS 287 (456)
Q Consensus 218 ~~~d------~~~l~~---~~~~~i~v~~P~NPtG~~~~~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~S~SK~ 287 (456)
++.| .+.++. .++++|.+++-.|.||.+.+-+++++++++++|-++.-.+. ++. ...+ +++.|--|.
T Consensus 132 ~~~~~~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pii~~~~~~~~~vD~~q~~g~~-~id~~~~~--~~~~s~~K~ 208 (377)
T 3e77_A 132 HPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSNFLSK-PVDVSKFG--VIFAGAQKN 208 (377)
T ss_dssp SCCCSSSCSCCCGGGCCCCTTCSCEEEESEETTTTEECSSCCCCTTCCEEEECTTTTTSS-CCCGGGCS--EEEEEGGGT
T ss_pred eccCCCcCCCCChHHhccCCCccEEEEeCccCchheEchhhhccCCCEEEEEcccccCCC-CCchhhcC--EEEEecccc
Confidence 4433 222221 35788888877788899988788889999999998874322 221 2222 578899999
Q ss_pred cCCCCceEEEEEEeCHHHHHHHH----------HH-HhhccCc-CChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHH
Q 012785 288 TGHAGTRIGWALVKDMEVAKKMT----------KY-IELNTIG-VSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNH 355 (456)
Q Consensus 288 ~g~~G~RiG~l~~~~~~~~~~l~----------~~-~~~~~~~-~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~ 355 (456)
+|.+| +|+++++ +++.+++. .. ......+ ++.....++.++|+.+.+. .-++.+.+
T Consensus 209 ~gp~G--~g~l~~~-~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~---------GG~~~i~~ 276 (377)
T 3e77_A 209 VGSAG--VTVVIVR-DDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNN---------GGAAAMEK 276 (377)
T ss_dssp TSCTT--CEEEEEE-TTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHT---------THHHHHHH
T ss_pred cCCCc--cEEEEEc-HHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHc---------cCHHHHHH
Confidence 99889 6888887 44422111 11 1112233 3444555556666643221 03778888
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc---cH---HHHHHHHHhCCEEeecCCCCCCC
Q 012785 356 QMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EI---EDCESFLKGNKILTRSGKHFGFS 429 (456)
Q Consensus 356 ~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~---~~~~~~l~~~gI~v~pg~~fg~~ 429 (456)
+.++..+++++.|++++++.+....... ..+.-+-+.+++ +. ..+...+.++||.+++|...
T Consensus 277 ~~~~l~~~l~~~L~~~~g~~~~~~~~~~---------rs~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~~~--- 344 (377)
T 3e77_A 277 LSSIKSQTIYEIIDNSQGFYVCPVEPQN---------RSKMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRS--- 344 (377)
T ss_dssp HHHHHHHHHHHHHHTSTTSEECCSCGGG---------BCSSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCCTT---
T ss_pred HHHHHHHHHHHHHHhcCCceecCCCHHH---------cCCcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCCCc---
Confidence 8999999999999988655532211111 111123444543 11 34566667899999997632
Q ss_pred CCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 430 PKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 430 ~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
.+.+|+|+.. ++|+++.+++.|++++
T Consensus 345 ~g~iRiS~~~~~t~edId~l~~al~~~~ 372 (377)
T 3e77_A 345 VGGIRASLYNAVTIEDVQKLAAFMKKFL 372 (377)
T ss_dssp TCSEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4569999875 8999999999999875
No 231
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.57 E-value=4.5e-13 Score=132.92 Aligned_cols=273 Identities=9% Similarity=-0.020 Sum_probs=173.8
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEE-ccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC--hhhhhhhcCCeEeee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVV-GTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS--YPSITDCVKSRLYKW 218 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~-t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~--~~~~~~~~g~~~~~~ 218 (456)
..+.|+.++++++. .++++|++ |.|+|+++++++..+..+|| +|++..-++.. ....++..| ++..+
T Consensus 74 ~~~ar~~la~ll~~-----~~~~evif~t~~~T~a~n~ai~~l~~~gd----~v~~~~~~~~~~~~~~~a~~~G-~v~~v 143 (386)
T 3qm2_A 74 AEEAEQDFRDLLNI-----PSNYKVLFCHGGGRGQFAGVPLNLLGDKT----TADYVDAGYWAASAIKEAKKYC-APQII 143 (386)
T ss_dssp CHHHHHHHHHHHTC-----CTTEEEEEEESCTTHHHHHHHHHHCTTCC----EEEEEESSHHHHHHHHHHTTTS-EEEEE
T ss_pred HHHHHHHHHHHhCC-----CCCceEEEEcCCchHHHHHHHHhccCCCC----eEEEEeCCHHHHHHHHHHHHhC-CeEEE
Confidence 57889999999974 12357888 68999999999999999998 87643332222 233455667 76655
Q ss_pred ccC--c-------ccccc---CCCeEEEEcCCCCCCcccch---HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEe
Q 012785 219 AGD--A-------KRFNK---DGPYIELVTSPNNPDGSVRQ---SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLF 282 (456)
Q Consensus 219 ~~d--~-------~~l~~---~~~~~i~v~~P~NPtG~~~~---~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~ 282 (456)
+.| . +.++. .++++|.+++-.|.||..+. +++ +|+++++|-++.-.+ .++. ...+ +.+.
T Consensus 144 ~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~tG~~i~pi~~i~--~g~~~~vDa~qs~g~-~pidv~~~~--~~~~ 218 (386)
T 3qm2_A 144 DAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETIDGIAIDETPDFG--PEVVVTADFSSTILS-APLDVSRYG--VIYA 218 (386)
T ss_dssp ECEEEETTEEEECCGGGCCCCTTCSCEEECSEETTTTEECCCCCCCC--TTCCEEEECTTTTTS-SCCCGGGCS--EEEE
T ss_pred ecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCCcCEecCchhhhc--CCCEEEEEcccccCC-CCCCccccC--EEEE
Confidence 554 2 22221 36788888877788899733 455 799999999887432 2221 2222 5778
Q ss_pred cCccccCCCCceEEEEEEeCHHHHHHHH----------HHHh-h-ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchh-H
Q 012785 283 TVSKSTGHAGTRIGWALVKDMEVAKKMT----------KYIE-L-NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDEC-F 349 (456)
Q Consensus 283 S~SK~~g~~G~RiG~l~~~~~~~~~~l~----------~~~~-~-~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~-~ 349 (456)
|--|.+|.+| +|+++++ +++.+++. .... . ....++.....++.++|+.+. +. -
T Consensus 219 s~hK~lGP~G--~g~l~v~-~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~----------~~gG 285 (386)
T 3qm2_A 219 GAQKNIGPAG--LTLVIVR-EDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLK----------AQGG 285 (386)
T ss_dssp ETTTTTCCTT--EEEEEEE-GGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHH----------HHTH
T ss_pred ecccccCCCc--cEEEEEC-HHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHH----------HhcC
Confidence 9999999888 8999987 55422111 1100 0 111233344445555555321 11 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCC
Q 012785 350 FEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFG 427 (456)
Q Consensus 350 l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg 427 (456)
++...++.++.++++++.|++++........ .. ..+..+-+.+++ -.+.+...|.++||.+++|...
T Consensus 286 ~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~-~~---------rs~~iv~f~~~~~~~~~~~~~~L~~~gI~~~~g~~~- 354 (386)
T 3qm2_A 286 VAAMHKINQQKAELLYGVIDNSDFYRNDVAQ-AN---------RSRMNVPFQLADNTLDKVFLEESFAAGLHALKGHRV- 354 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSEECCBCG-GG---------BCSSEEEEEESSGGGHHHHHHHHHHTTEECCBCCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcccCCCH-HH---------cCceEEEEECCCccccHHHHHHHHHCCCEEeCCCCC-
Confidence 7778888999999999999887532221111 00 111234455553 2255666688999999987643
Q ss_pred CCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 428 FSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 428 ~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
.+.+|+|+.. ++|+++.+++.|+++.
T Consensus 355 --~~~iRiS~~~~~t~edId~l~~~l~~~~ 382 (386)
T 3qm2_A 355 --VGGMRASIYNAMPIEGVKALTDFMIDFE 382 (386)
T ss_dssp --TCSEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred --cCeEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 2459999875 8999999999999875
No 232
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.55 E-value=3.4e-13 Score=142.74 Aligned_cols=280 Identities=10% Similarity=0.055 Sum_probs=169.6
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG- 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~- 220 (456)
..++++.+|++++. ++.+++++|++.++..++.+++++|| +|+++.|+|..+...+...|++++.++.
T Consensus 197 i~eaE~~lA~~fGa-------~~a~~v~nGts~An~~ai~al~~pGD----~VLv~r~~H~S~~~~l~lsGa~pv~v~~~ 265 (715)
T 3n75_A 197 HKEAEQYIARVFNA-------DRSYMVTNGTSTANKIVGMYSAPAGS----TILIDRNCHKSLTHLMMMSDVTPIYFRPT 265 (715)
T ss_dssp HHHHHHHHHHHHTC-------SEEEEESSHHHHHHHHHHHHHCCTTC----EEEEESSCCHHHHHHHHHSCCEEEEECCC
T ss_pred HHHHHHHHHHHhCC-------CCceEECcHHHHHHHHHHHHhCCCCC----EEEECCCccHHHHHHHHHcCCEEEEEecc
Confidence 47899999999974 45678899999999999999999999 9999999999999999999999886653
Q ss_pred ---------------Ccccccc-----CCCe---EEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC-CCC--
Q 012785 221 ---------------DAKRFNK-----DGPY---IELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP-QYT-- 269 (456)
Q Consensus 221 ---------------d~~~l~~-----~~~~---~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~-~~~-- 269 (456)
|.+.++. .+++ ++++++| ||+|.+.+ ++|++++ +|+||+|... .+.
T Consensus 266 ~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~ 342 (715)
T 3n75_A 266 RNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPI 342 (715)
T ss_dssp BCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGG
T ss_pred ccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCc
Confidence 3443432 1233 7889999 99999977 2566553 7899999742 111
Q ss_pred -----CCCCC--CCCc-EEEecCccccCCCCc-eEEEEEEeCHHHHHHHHHHHhhc-cCcCChHHHHHHHHHHHhhhCCC
Q 012785 270 -----SITYP--ADHD-LMLFTVSKSTGHAGT-RIGWALVKDMEVAKKMTKYIELN-TIGVSKDSQLRAAKVLKVVSDSC 339 (456)
Q Consensus 270 -----~~~~~--~~~~-i~i~S~SK~~g~~G~-RiG~l~~~~~~~~~~l~~~~~~~-~~~~s~~~q~~a~~~L~~~~~~~ 339 (456)
++... .|.+ ++++|++|+++ |+ -.||+.++++-..+++....... +.++|.+...++..+++.+..
T Consensus 343 ~~~~~al~~g~~aD~vii~~~S~hKtL~--gltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~~~-- 418 (715)
T 3n75_A 343 YEGKCGMSGGRVEGKVIYETQSTHKLLA--AFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKG-- 418 (715)
T ss_dssp GTTSSTTSSSCCTTCEEEEEECHHHHSS--CCTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSH--
T ss_pred cccccccccCcCCCEEEEEEeccccccc--CCCCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHh--
Confidence 12111 2332 55999999964 43 35888887432233444443333 344555555555555543321
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCC------ccccCCC-------------CcccccccccCCC-----CC
Q 012785 340 KPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGL------FSVPELP-------------SQFCTFLGRAFEP-----QP 395 (456)
Q Consensus 340 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~------~~~~~~~-------------g~~~~~~~~~~~~-----~~ 395 (456)
..-+..++++.++.+.+++.|++++. +.+..+. ..+..| . .+.. ++
T Consensus 419 --------~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf-~-~~~~~~~~~Dp 488 (715)
T 3n75_A 419 --------NAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGF-K-NIDNEHMYLDP 488 (715)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCC-T-TCCSSSEEECT
T ss_pred --------hccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccc-c-ccccCcccCCC
Confidence 11123344555555555555554421 1111111 000000 0 0000 11
Q ss_pred ceEEeecCc------------cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhh
Q 012785 396 AFAWLKCEQ------------EIEDCESFLKGNKILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKI 454 (456)
Q Consensus 396 ~f~~~~~~~------------~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~ 454 (456)
.=+.+.+++ +...+.+.|+++||.+--.+ .++|=+-++ .++++++.+++.|.++
T Consensus 489 ~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d-----~~~vl~l~s~g~~~~~~~~L~~aL~~~ 556 (715)
T 3n75_A 489 IKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTG-----PYNLLFLFSIGIDKTKALSLLRALTDF 556 (715)
T ss_dssp TEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEE-----TTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecC-----CCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 113444332 24578888999999875422 344444333 3788899998888765
No 233
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.51 E-value=2.4e-14 Score=154.95 Aligned_cols=197 Identities=11% Similarity=0.031 Sum_probs=132.5
Q ss_pred CeEEEEcCC-CCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCCCC-----CCCcEEEecCccccCCCC-c
Q 012785 230 PYIELVTSP-NNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSITYP-----ADHDLMLFTVSKSTGHAG-T 293 (456)
Q Consensus 230 ~~~i~v~~P-~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~~~-----~~~~i~i~S~SK~~g~~G-~ 293 (456)
+.++++..- ++..|.... ++|++||+++|.||++.+.+.++-... -..+| .+|||.++ .| +
T Consensus 595 iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi--itlsK~L~-gG~~ 671 (831)
T 4a0g_A 595 VGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDI--ACFAKLLT-GGMV 671 (831)
T ss_dssp EEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSE--EEECGGGG-TTSS
T ss_pred EEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCcE--EEEecccc-cCcc
Confidence 456666543 788888764 389999999999999997655442211 11233 47999998 68 8
Q ss_pred eEEEEEEeCHHHHHHHHHH------HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHH-HHHHHH
Q 012785 294 RIGWALVKDMEVAKKMTKY------IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTR-WKQLRM 366 (456)
Q Consensus 294 RiG~l~~~~~~~~~~l~~~------~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~l~~ 366 (456)
++|+++++ +++++.+... ....+++.+++++.++.+.|+.+.+... .+.+.+..+.+++. ++.+.+
T Consensus 672 Plgav~~~-~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l------~~~~~~~~~~l~~~l~~~l~~ 744 (831)
T 4a0g_A 672 PLAVTLAT-DAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPET------NHNITSQGKTLRELWDEELVQ 744 (831)
T ss_dssp CCEEEEEC-HHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTT------CTTBCTTSSBBCCCSCHHHHH
T ss_pred CcEEEEEC-HHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 99999997 9998887542 1346889999999999999987755421 11111111111111 123445
Q ss_pred HHHhcCCccccCCCCcccccccccCCCCCceEEeecCc----------cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEE
Q 012785 367 AVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----------EIEDCESFLKGNKILTRSGKHFGFSPKYVRIS 436 (456)
Q Consensus 367 ~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----------~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis 436 (456)
.+++.+.+...+..|. ++.+.+.. ....+.+.+.++||.++|+ .+.+|++
T Consensus 745 ~l~~~~~v~~vrg~Gl--------------~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~------g~~lrl~ 804 (831)
T 4a0g_A 745 QISSHSAVQRVVVIGT--------------LFALELKADASNSGYASLYAKSLLIMLREDGIFTRPL------GNVIYLM 804 (831)
T ss_dssp HHHHSTTEEEEEEETT--------------EEEEEEC---------CHHHHHHHHHHHHTTEECCCB------TTEEEEE
T ss_pred HHhhCCCceeEeeccc--------------EEEEEEecCccccccchHHHHHHHHHHHHCCcEEEec------CCEEEEE
Confidence 5666665544554454 45555521 2345777888999999984 4789998
Q ss_pred --ecCChhHHHHHHHHHHhhhC
Q 012785 437 --MLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 437 --~~~~~e~i~~~l~~L~~~l~ 456 (456)
+..+++++++++++|.++++
T Consensus 805 pp~~~t~e~id~~~~~l~~~l~ 826 (831)
T 4a0g_A 805 CGPCTSPEICRRLLTKLYKRLG 826 (831)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 44599999999999998764
No 234
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.00 E-value=2.3e-08 Score=99.04 Aligned_cols=275 Identities=10% Similarity=0.007 Sum_probs=162.5
Q ss_pred HHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCC----CCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-----
Q 012785 150 VRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQ----DASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG----- 220 (456)
Q Consensus 150 a~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~----gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~----- 220 (456)
.+|+...|.+.. ...++++|+|.++.+++.+.+++ ++ +|+++.-++......+...|++++.++.
T Consensus 123 ld~L~~~G~~~~--~~~flVnGsTgg~lamilaa~r~~rpg~d----~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~ 196 (501)
T 3hl2_A 123 LDIIKLAGVHTV--ANCFVVPMATGMSLTLCFLTLRHKRPKAK----YIIWPRIDQKSCFKSMITAGFEPVVIENVLEGD 196 (501)
T ss_dssp HHHHHHTTCTTC--CEEEEESSCHHHHHHHHHHHHHHHCTTCC----EEEEECCCCHHHHHHHHHTTCEEEEECEEEETT
T ss_pred HHHHHHcCCCCC--CcEEEECcHHHHHHHHHHHHcCcccCCCC----EEEEecchHHHHHHHHHHcCCeEEEEeeeeccc
Confidence 456666777753 46889999997776666666553 37 9999999999999999999999875443
Q ss_pred ----Ccccccc----C--CCeEEE-EcCCCCCCccc--ch---HHhhhcCcEEEeeecCCCCC-C-CCCC---CCCC-Cc
Q 012785 221 ----DAKRFNK----D--GPYIEL-VTSPNNPDGSV--RQ---SVVNRSGGILVHDLAYYWPQ-Y-TSIT---YPAD-HD 278 (456)
Q Consensus 221 ----d~~~l~~----~--~~~~i~-v~~P~NPtG~~--~~---~l~~~~~~~iI~De~y~~~~-~-~~~~---~~~~-~~ 278 (456)
|.+.++. . +..+++ .+.+.|-.|.+ +. ++|+++|+++++|+||.... + ..++ ...+ -+
T Consensus 197 ~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD 276 (501)
T 3hl2_A 197 ELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRID 276 (501)
T ss_dssp EEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCC
T ss_pred ccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCc
Confidence 3333332 1 233444 43445532332 22 48999999999999998521 1 1111 1123 57
Q ss_pred EEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHH
Q 012785 279 LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMS 358 (456)
Q Consensus 279 i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~ 358 (456)
+++.|..|.+-+| +.-|.+...|+++.+++..... .+ ..+.++......++.. + .+.++++.++..
T Consensus 277 ~vVqS~HK~llvp-IGG~ii~~~d~e~l~~~~~~yP-Gr-~S~Spsldl~~tLL~l---G--------r~Gy~~ll~e~~ 342 (501)
T 3hl2_A 277 AFVQSLDKNFMVP-VGGAIIAGFNDSFIQEISKMYP-GR-ASASPSLDVLITLLSL---G--------SNGYKKLLKERK 342 (501)
T ss_dssp EEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHHTSC-SC-BCSHHHHHHHHHHHHH---H--------HHHHHHHHHHHH
T ss_pred EEEecccccceee-cCceEEEeCCHHHHHHHHHhCC-CC-CCCcHHHHHHHHHHHH---H--------HHHHHHHHHHHH
Confidence 8999999998654 2234444667887777643321 01 1222333233333331 1 455567777777
Q ss_pred HHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCc--eEEeecCc-------cHHHHHHHHHhCCE---E-eecCC-
Q 012785 359 TRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPA--FAWLKCEQ-------EIEDCESFLKGNKI---L-TRSGK- 424 (456)
Q Consensus 359 ~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~--f~~~~~~~-------~~~~~~~~l~~~gI---~-v~pg~- 424 (456)
+..+++.+.|+++.. .. | .++.....| -+-+.+.. ....+-..|-.++| . |.+|.
T Consensus 343 ela~~L~~~L~~la~--~~---g------e~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~ 411 (501)
T 3hl2_A 343 EMFSYLSNQIKKLSE--AY---N------ERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSM 411 (501)
T ss_dssp HHHHHHHHHHHHHHH--TT---T------CCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCC
T ss_pred HHHHHHHHHHHHHHH--hc---C------hhhcCCCCCceeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCc
Confidence 777788888776421 00 0 011111111 23334421 23455555555555 2 35555
Q ss_pred ---------CCCC-----CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 425 ---------HFGF-----SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 425 ---------~fg~-----~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
.||. ...|+-++-+. +++|++.++++|.+++
T Consensus 412 ~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~ 458 (501)
T 3hl2_A 412 QTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCL 458 (501)
T ss_dssp EEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred eEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 5664 24578777553 8999999999999876
No 235
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=98.96 E-value=1.6e-07 Score=92.76 Aligned_cols=258 Identities=13% Similarity=0.106 Sum_probs=161.2
Q ss_pred eEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh--------hhcC--CeEeeeccC-------cccccc
Q 012785 165 HIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT--------DCVK--SRLYKWAGD-------AKRFNK 227 (456)
Q Consensus 165 ~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~--------~~~g--~~~~~~~~d-------~~~l~~ 227 (456)
+|-.-+| ++|...++.+|++||| +|+..+....++..-- ...| .+.+++.+| .+.++.
T Consensus 123 NVQP~SG-s~AN~avy~All~PGD----~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~ 197 (490)
T 3ou5_A 123 NVQPYSG-SPANLAVYTALLQPHD----RIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLAL 197 (490)
T ss_dssp ECCCSSH-HHHHHHHHHHHCC-CC----CEECBC----------------------------CBCEETTTTEECHHHHHH
T ss_pred CCCcCCH-HHHHHHHHHHHcCCCC----EEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHH
Confidence 4544455 5888899999999999 9999887766654321 1111 123344433 333332
Q ss_pred ----CCCeEEEEcCCCCCCcccch---HHhhhcCcEEEeeecCC------CCCCCCCCCCCCCcEEEecCccccCCCCce
Q 012785 228 ----DGPYIELVTSPNNPDGSVRQ---SVVNRSGGILVHDLAYY------WPQYTSITYPADHDLMLFTVSKSTGHAGTR 294 (456)
Q Consensus 228 ----~~~~~i~v~~P~NPtG~~~~---~l~~~~~~~iI~De~y~------~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R 294 (456)
.+|++|+..--.+|-=.-+. ++|++.|.+++.|-++. +....|++. -+|+..|..|+| +|=|
T Consensus 198 ~A~~~kPklIi~G~SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~---ADvVTtTTHKTL--rGPr 272 (490)
T 3ou5_A 198 TARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH---ADIVTTTTHKTL--RGAR 272 (490)
T ss_dssp HHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT---CSEEEEESSSTT--CSCS
T ss_pred HHhhcCCCeEEECCccCccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCcccc---ceEEeccccccc--cCCC
Confidence 38999998665666555554 48999999999999986 222334432 468899999987 6678
Q ss_pred EEEEEEeCH--------------HHHHHHHHHHhhccCcCChHHHHHHHHH-HHhhhCCCCCCCCcchhHHHHHHHHHHH
Q 012785 295 IGWALVKDM--------------EVAKKMTKYIELNTIGVSKDSQLRAAKV-LKVVSDSCKPSGSEDECFFEFTNHQMST 359 (456)
Q Consensus 295 iG~l~~~~~--------------~~~~~l~~~~~~~~~~~s~~~q~~a~~~-L~~~~~~~~~~~~~~~~~l~~~~~~~~~ 359 (456)
-|.+++.++ ++.+++.+.......|.+.....++.++ +... ....++...+++.+
T Consensus 273 GG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea----------~~p~fk~Ya~qVv~ 342 (490)
T 3ou5_A 273 SGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQA----------CTPMFREYSLQVLK 342 (490)
T ss_dssp CEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH----------HSHHHHHHHHHHHH
T ss_pred ceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHH----------HhHhHHHHHHHHHH
Confidence 899998632 5677887776544555555555544433 3311 13355667788888
Q ss_pred HHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEee----cCCCCCCCCCe
Q 012785 360 RWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTR----SGKHFGFSPKY 432 (456)
Q Consensus 360 ~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~----pg~~fg~~~~~ 432 (456)
+.+.|.+.|.+.+ +.+.. |+ .+...+++++.. +.+.+.+.|.+.||.+. |++.-...+..
T Consensus 343 NAkaLA~~L~~~G-~~vvs--Gg----------TdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SG 409 (490)
T 3ou5_A 343 NARAMADALLERG-YSLVS--GG----------TDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGG 409 (490)
T ss_dssp HHHHHHHHHHHTT-CEEGG--GS----------CSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSE
T ss_pred HHHHHHHHHHhCC-Ceeec--CC----------CCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCe
Confidence 9999999999876 44432 21 112257778743 57889999999999885 44421124668
Q ss_pred EEEEec------CChhHHHHHHHHHHhhh
Q 012785 433 VRISML------DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 433 iRis~~------~~~e~i~~~l~~L~~~l 455 (456)
|||... ..+++++++.+.|.+++
T Consensus 410 iRiGTpa~TtRG~~e~dm~~IA~~I~~~l 438 (490)
T 3ou5_A 410 LRLGAPALTSRQFREDDFRRVVDFIDEGV 438 (490)
T ss_dssp EEEESHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred eEECCHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999953 27888888888877654
No 236
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=98.72 E-value=6.1e-07 Score=89.71 Aligned_cols=209 Identities=9% Similarity=-0.079 Sum_probs=123.9
Q ss_pred HHHHHHHHHH-HHhcCccCCCceEEEccCHHHHHHHHHHHhcCC----CCCCCcEEEEeCCCCCChhhhhhhcCCeEeee
Q 012785 144 EFAKEVVRLH-KVVGNAITENHHIVVGTGSTQLFQAALYALSSQ----DASEPISVVSAAPYYSSYPSITDCVKSRLYKW 218 (456)
Q Consensus 144 ~lr~aia~~~-~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~----gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~ 218 (456)
.+.+.+.+++ ...|.+. ....++++|+|.+..+++.+.+.+ ++ .|+++.-++......+..+|++.+.+
T Consensus 98 ~~e~~~~~~~~~~lGlp~--~~~~~lV~GaT~~~~a~~L~aar~~~~~~~----~viv~r~aHkSv~kAl~l~Gl~p~~v 171 (450)
T 3bc8_A 98 KITNSLVLNVIKLAGVHS--VASCFVVPMATGMSLTLCFLTLRHKRPKAK----YIIWPRIDQKSCFKSMVTAGFEPVVI 171 (450)
T ss_dssp HHHHHHHHHHHHHHTCTT--CCEEEEESSCHHHHHHHHHHHHHHHCTTCC----EEEEECCCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHhCCCCC--CceEEEECCHHHHHHHHHHHHcchhhcCCC----EEEEECCcHHHHHHHHHHcCCeeEEE
Confidence 4555555554 4556553 235678888874444444444333 66 89999999999999999999987654
Q ss_pred c---------cCcccccc----C--CCeEEEEcCC-CCCCcccch-----HHhhhcCcEEEeeecCCCCC-C-CCCC-CC
Q 012785 219 A---------GDAKRFNK----D--GPYIELVTSP-NNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-Y-TSIT-YP 274 (456)
Q Consensus 219 ~---------~d~~~l~~----~--~~~~i~v~~P-~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~-~~~~-~~ 274 (456)
+ +|.+.++. . +..++++.+| .+.+|.+-+ ++|+++|+++++|++|.... + ..++ ..
T Consensus 172 ~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a 251 (450)
T 3bc8_A 172 ENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQG 251 (450)
T ss_dssp CCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHH
T ss_pred EeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHH
Confidence 3 34444432 1 2345555566 445555433 48999999999999998521 1 1111 11
Q ss_pred ---CCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHH
Q 012785 275 ---ADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFE 351 (456)
Q Consensus 275 ---~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~ 351 (456)
..-+.++.|..|.+. .-.-.+++.+.|++..+++..... ....+.++......++. .+ .+-++
T Consensus 252 ~~~~~AD~~v~S~HK~l~-a~~~~~~l~~rd~~~~~~~~~~~~--g~~s~SpsL~l~~~l~~---~G--------~~g~~ 317 (450)
T 3bc8_A 252 ARVGRIDAFVQSLDKNFM-VPVGGAIIAGFNEPFIQDISKMYP--GRASASPSLDVLITLLS---LG--------CSGYR 317 (450)
T ss_dssp HHHSCCCEEEEEHHHHHS-CCSSCEEEEESCHHHHHHHHHHSC--SCBCSHHHHHHHHHHHH---HH--------HHHHH
T ss_pred hcccCCCEEEECCccCCC-chhccEEEEecCHHHHHHHHHHhh--cCCcccHHHHHHHHHHH---HH--------HHHHH
Confidence 234678899999886 444567777777877766644321 11333444333333332 12 34445
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 012785 352 FTNHQMSTRWKQLRMAVQKSG 372 (456)
Q Consensus 352 ~~~~~~~~~~~~l~~~L~~~~ 372 (456)
+..+...+..+.+.+.|++++
T Consensus 318 ~~i~~~~~~a~~l~~~l~~~~ 338 (450)
T 3bc8_A 318 KLLKERKEMFVYLSTQLKKLA 338 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhH
Confidence 555555555666666666543
No 237
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=49.36 E-value=94 Score=27.26 Aligned_cols=90 Identities=11% Similarity=0.117 Sum_probs=47.1
Q ss_pred CceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh-hhhhhcCCeEeeeccCccccccCCCeEEEEcCCCCC
Q 012785 163 NHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP-SITDCVKSRLYKWAGDAKRFNKDGPYIELVTSPNNP 241 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~-~~~~~~g~~~~~~~~d~~~l~~~~~~~i~v~~P~NP 241 (456)
...|++.-|+..|...+ ..|...|. .|.+-+|....-. ...+..+++.+.-+.+.+.++ +..+|+. .+++|
T Consensus 31 gk~VLVVGgG~va~~ka-~~Ll~~GA----~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~--~adLVIa-AT~d~ 102 (223)
T 3dfz_A 31 GRSVLVVGGGTIATRRI-KGFLQEGA----AITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLL--NVFFIVV-ATNDQ 102 (223)
T ss_dssp TCCEEEECCSHHHHHHH-HHHGGGCC----CEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSS--SCSEEEE-CCCCT
T ss_pred CCEEEEECCCHHHHHHH-HHHHHCCC----EEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhC--CCCEEEE-CCCCH
Confidence 35666666666666655 45666666 7888888765432 333333455554333444443 3345544 56665
Q ss_pred C-cccchHHhhhcCcEE-Eeee
Q 012785 242 D-GSVRQSVVNRSGGIL-VHDL 261 (456)
Q Consensus 242 t-G~~~~~l~~~~~~~i-I~De 261 (456)
. -....+.|+ .++++ +.|+
T Consensus 103 ~~N~~I~~~ak-~gi~VNvvD~ 123 (223)
T 3dfz_A 103 AVNKFVKQHIK-NDQLVNMASS 123 (223)
T ss_dssp HHHHHHHHHSC-TTCEEEC---
T ss_pred HHHHHHHHHHh-CCCEEEEeCC
Confidence 3 222334566 77775 4555
No 238
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=26.50 E-value=73 Score=31.32 Aligned_cols=92 Identities=10% Similarity=0.028 Sum_probs=54.0
Q ss_pred CceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh-hhcCCeEeeeccCccccccCCCeEEEEcCCCCC
Q 012785 163 NHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT-DCVKSRLYKWAGDAKRFNKDGPYIELVTSPNNP 241 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~-~~~g~~~~~~~~d~~~l~~~~~~~i~v~~P~NP 241 (456)
...|++.-|+..+...+ ..|.+.|. +|.+-+|....-.... +..+++++.-..+.+.++ +..++ +..|++|
T Consensus 12 ~~~vlVvGgG~va~~k~-~~L~~~ga----~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~~~l~--~~~lV-i~at~~~ 83 (457)
T 1pjq_A 12 DRDCLIVGGGDVAERKA-RLLLEAGA----RLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLD--SCWLA-IAATDDD 83 (457)
T ss_dssp TCEEEEECCSHHHHHHH-HHHHHTTB----EEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGT--TCSEE-EECCSCH
T ss_pred CCEEEEECCCHHHHHHH-HHHHhCcC----EEEEEcCCCCHHHHHHHhcCCEEEEECCCCccccC--CccEE-EEcCCCH
Confidence 35677777777777766 45666776 7888888765432222 223455543333333443 23344 4477777
Q ss_pred -CcccchHHhhhcCcEE-Eeeec
Q 012785 242 -DGSVRQSVVNRSGGIL-VHDLA 262 (456)
Q Consensus 242 -tG~~~~~l~~~~~~~i-I~De~ 262 (456)
.-....+.|++.++++ +.|+.
T Consensus 84 ~~n~~i~~~a~~~~i~vn~~d~~ 106 (457)
T 1pjq_A 84 TVNQRVSDAAESRRIFCNVVDAP 106 (457)
T ss_dssp HHHHHHHHHHHHTTCEEEETTCT
T ss_pred HHHHHHHHHHHHcCCEEEECCCc
Confidence 3444556788999986 57764
No 239
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=20.07 E-value=3.5e+02 Score=24.79 Aligned_cols=88 Identities=11% Similarity=0.143 Sum_probs=50.2
Q ss_pred EEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCC-CCChhhhhhhcCCeEeeeccCccccccCCCeEEEEcCCCCCCcc
Q 012785 166 IVVGTGSTQLFQAALYALSSQDASEPISVVSAAPY-YSSYPSITDCVKSRLYKWAGDAKRFNKDGPYIELVTSPNNPDGS 244 (456)
Q Consensus 166 I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~-y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~~~i~v~~P~NPtG~ 244 (456)
.+++-|++ ++..+...|.+.|- +|.+.+-. ++.....++..|+++.. ..+.+.+......+|++ +|.=|...
T Consensus 8 ~~iGiGg~-Gms~~A~~L~~~G~----~V~~~D~~~~~~~~~~L~~~gi~v~~-g~~~~~l~~~~~d~vV~-Spgi~~~~ 80 (326)
T 3eag_A 8 HIIGIGGT-FMGGLAAIAKEAGF----EVSGCDAKMYPPMSTQLEALGIDVYE-GFDAAQLDEFKADVYVI-GNVAKRGM 80 (326)
T ss_dssp EEESCCSH-HHHHHHHHHHHTTC----EEEEEESSCCTTHHHHHHHTTCEEEE-SCCGGGGGSCCCSEEEE-CTTCCTTC
T ss_pred EEEEECHH-HHHHHHHHHHhCCC----EEEEEcCCCCcHHHHHHHhCCCEEEC-CCCHHHcCCCCCCEEEE-CCCcCCCC
Confidence 35677764 45555556667777 77776543 34455566777887652 33444443123456665 55433322
Q ss_pred cchHHhhhcCcEEEee
Q 012785 245 VRQSVVNRSGGILVHD 260 (456)
Q Consensus 245 ~~~~l~~~~~~~iI~D 260 (456)
..-+-+++.|+.++.+
T Consensus 81 p~~~~a~~~gi~v~~~ 96 (326)
T 3eag_A 81 DVVEAILNLGLPYISG 96 (326)
T ss_dssp HHHHHHHHTTCCEEEH
T ss_pred HHHHHHHHcCCcEEeH
Confidence 2223467788888876
Done!