BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012786
(456 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QQJ|A Chain A, Crystal Structure Of Mouse Fumarylacetoacetate Hydrolase
Refined At 1.55 Angstrom Resolution
pdb|1QQJ|B Chain B, Crystal Structure Of Mouse Fumarylacetoacetate Hydrolase
Refined At 1.55 Angstrom Resolution
Length = 419
Score = 466 bits (1199), Expect = e-131, Method: Compositional matrix adjust.
Identities = 235/452 (51%), Positives = 288/452 (63%), Gaps = 40/452 (8%)
Query: 5 SFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPIL-KDS 63
SFI V DS FPIQNLPYGVF + R GVAIG+ +LDLS I LF GP L K
Sbjct: 2 SFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKH--LFTGPALSKHQ 59
Query: 64 DCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPM 123
F + LN F+ LG+ AWKEAR LQ LLS+++A LRD+ LRQ++ M LP
Sbjct: 60 HVFDETTLNNFMGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHLPA 119
Query: 124 EIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIFHLQ 183
IGDYTDF+SS HA N G +FRG NA+ NW
Sbjct: 120 TIGDYTDFYSSRQHATNVGIMFRGKENALLPNW--------------------------- 152
Query: 184 VYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAXXXXXXXXXXXXQKLDFELEMA 243
HLP+ YHGRASS+V+SGT I RP GQ + LD ELEMA
Sbjct: 153 ---------LHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELEMA 203
Query: 244 AVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWI 303
VGPGN G+PI +++A +HIFG++LMNDWSARDIQ WEYVPLGPFLGKSFGTT+SPW+
Sbjct: 204 FFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISPWV 263
Query: 304 VTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLY 363
V +DAL PF +PKQDP+PLPYL +DI+L V +K G + + RSNFK++Y
Sbjct: 264 VPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHMY 323
Query: 364 WTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKF 422
WT+ QQL HH++NGCNLR GDLL +GTISG +PES G +LEL+W G K + + G TR F
Sbjct: 324 WTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGSMLELSWKGTKAIDVGQGQTRTF 383
Query: 423 LEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 454
L DGDEV TG C+G+GY VGFG C+GK++P+
Sbjct: 384 LLDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 415
>pdb|1QCO|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase
Complexed With Fumarate And Acetoacetate
pdb|1QCO|B Chain B, Crystal Structure Of Fumarylacetoacetate Hydrolase
Complexed With Fumarate And Acetoacetate
Length = 423
Score = 466 bits (1199), Expect = e-131, Method: Compositional matrix adjust.
Identities = 235/452 (51%), Positives = 288/452 (63%), Gaps = 40/452 (8%)
Query: 5 SFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPIL-KDS 63
SFI V DS FPIQNLPYGVF + R GVAIG+ +LDLS I LF GP L K
Sbjct: 4 SFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKH--LFTGPALSKHQ 61
Query: 64 DCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPM 123
F + LN F+ LG+ AWKEAR LQ LLS+++A LRD+ LRQ++ M LP
Sbjct: 62 HVFDETTLNNFMGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHLPA 121
Query: 124 EIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIFHLQ 183
IGDYTDF+SS HA N G +FRG NA+ NW
Sbjct: 122 TIGDYTDFYSSRQHATNVGIMFRGKENALLPNW--------------------------- 154
Query: 184 VYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAXXXXXXXXXXXXQKLDFELEMA 243
HLP+ YHGRASS+V+SGT I RP GQ + LD ELEMA
Sbjct: 155 ---------LHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELEMA 205
Query: 244 AVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWI 303
VGPGN G+PI +++A +HIFG++LMNDWSARDIQ WEYVPLGPFLGKSFGTT+SPW+
Sbjct: 206 FFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISPWV 265
Query: 304 VTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLY 363
V +DAL PF +PKQDP+PLPYL +DI+L V +K G + + RSNFK++Y
Sbjct: 266 VPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHMY 325
Query: 364 WTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKF 422
WT+ QQL HH++NGCNLR GDLL +GTISG +PES G +LEL+W G K + + G TR F
Sbjct: 326 WTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGSMLELSWKGTKAIDVGQGQTRTF 385
Query: 423 LEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 454
L DGDEV TG C+G+GY VGFG C+GK++P+
Sbjct: 386 LLDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 417
>pdb|1HYO|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase
Complexed With
4-(Hydroxymethylphosphinoyl)-3-Oxo-Butanoic Acid
pdb|1HYO|B Chain B, Crystal Structure Of Fumarylacetoacetate Hydrolase
Complexed With
4-(Hydroxymethylphosphinoyl)-3-Oxo-Butanoic Acid
pdb|2HZY|A Chain A, Mouse Fumarylacetoacetate Hydrolase Complexes With A
Transition-State Mimic Of The Complete Substrate
pdb|2HZY|B Chain B, Mouse Fumarylacetoacetate Hydrolase Complexes With A
Transition-State Mimic Of The Complete Substrate
Length = 421
Score = 466 bits (1198), Expect = e-131, Method: Compositional matrix adjust.
Identities = 235/452 (51%), Positives = 288/452 (63%), Gaps = 40/452 (8%)
Query: 5 SFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPIL-KDS 63
SFI V DS FPIQNLPYGVF + R GVAIG+ +LDLS I LF GP L K
Sbjct: 4 SFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKH--LFTGPALSKHQ 61
Query: 64 DCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPM 123
F + LN F+ LG+ AWKEAR LQ LLS+++A LRD+ LRQ++ M LP
Sbjct: 62 HVFDETTLNNFMGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHLPA 121
Query: 124 EIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIFHLQ 183
IGDYTDF+SS HA N G +FRG NA+ NW
Sbjct: 122 TIGDYTDFYSSRQHATNVGIMFRGKENALLPNW--------------------------- 154
Query: 184 VYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAXXXXXXXXXXXXQKLDFELEMA 243
HLP+ YHGRASS+V+SGT I RP GQ + LD ELEMA
Sbjct: 155 ---------LHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELEMA 205
Query: 244 AVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWI 303
VGPGN G+PI +++A +HIFG++LMNDWSARDIQ WEYVPLGPFLGKSFGTT+SPW+
Sbjct: 206 FFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISPWV 265
Query: 304 VTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLY 363
V +DAL PF +PKQDP+PLPYL +DI+L V +K G + + RSNFK++Y
Sbjct: 266 VPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHMY 325
Query: 364 WTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKF 422
WT+ QQL HH++NGCNLR GDLL +GTISG +PES G +LEL+W G K + + G TR F
Sbjct: 326 WTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGSMLELSWKGTKAIDVGQGQTRTF 385
Query: 423 LEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 454
L DGDEV TG C+G+GY VGFG C+GK++P+
Sbjct: 386 LLDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 417
>pdb|1QCN|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase
pdb|1QCN|B Chain B, Crystal Structure Of Fumarylacetoacetate Hydrolase
Length = 421
Score = 448 bits (1153), Expect = e-126, Method: Compositional matrix adjust.
Identities = 232/452 (51%), Positives = 278/452 (61%), Gaps = 40/452 (8%)
Query: 5 SFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPIL-KDS 63
SFI V DS FPIQNLPYGVF + R GVAIG+ +LDLS I LF GP L K
Sbjct: 4 SFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKH--LFTGPALSKHQ 61
Query: 64 DCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPM 123
F + LN F LG+ AWKEAR LQ LLS+++A LRD+ LRQ++ LP
Sbjct: 62 HVFDETTLNNFXGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATXHLPA 121
Query: 124 EIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIFHLQ 183
IGDYTDF+SS HA N G FRG NA+ NW
Sbjct: 122 TIGDYTDFYSSRQHATNVGIXFRGKENALLPNW--------------------------- 154
Query: 184 VYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAXXXXXXXXXXXXQKLDFELEMA 243
HLP+ YHGRASS+V+SGT I RP GQ + LD ELE A
Sbjct: 155 ---------LHLPVGYHGRASSIVVSGTPIRRPXGQXRPDNSKPPVYGACRLLDXELEXA 205
Query: 244 AVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWI 303
VGPGN G+PI +++A +HIFG +L NDWSARDIQ WEYVPLGPFLGKSFGTT+SPW+
Sbjct: 206 FFVGPGNRFGEPIPISKAHEHIFGXVLXNDWSARDIQQWEYVPLGPFLGKSFGTTISPWV 265
Query: 304 VTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLY 363
V DAL PF +PKQDP+PLPYL +DI+L V +K G + + RSNFK+ Y
Sbjct: 266 VPXDALXPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGXSQAATICRSNFKHXY 325
Query: 364 WTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKF 422
WT QQL HH++NGCNLR GDLL +GTISG +PES G LEL+W G K + + G TR F
Sbjct: 326 WTXLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGSXLELSWKGTKAIDVGQGQTRTF 385
Query: 423 LEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 454
L DGDEV TG C+G+GY VGFG C+GK++P+
Sbjct: 386 LLDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 417
>pdb|3R6O|A Chain A, Crystal Structure Of A Probable
2-Hydroxyhepta-2,4-Diene-1, 7- Dioateisomerase From
Mycobacterium Abscessus
Length = 329
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 39/167 (23%)
Query: 234 QKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQ---AWEYVPLGPF 290
LD+E+E+A V+G + G I+ ++A H+ G ML ND +ARD+ + PL
Sbjct: 153 HALDYEIEIAVVIG---KPGYRIERSQAIKHVAGYMLANDITARDVALPFGFGGSPLQAQ 209
Query: 291 L--GKSFGT--TLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPA 346
+ GK + T PW+ T + F + ++++ + +++ +
Sbjct: 210 VVRGKGYPTFCPTGPWLFTTGSDTTFE------------------TFDFELRINGELRQS 251
Query: 347 GKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISG 393
G S V F + T++ +A LR+GD++ TGT G
Sbjct: 252 G---STVDMTLGFAEVVETVSATIA--------LRAGDIILTGTPGG 287
>pdb|2DFU|A Chain A, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|B Chain B, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|C Chain C, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|D Chain D, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
Length = 264
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 14/69 (20%)
Query: 234 QKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQ-----------AW 282
++L +E E+A VVG + + + +A DH+ G + D +ARD+Q A
Sbjct: 109 EELHYEGELAVVVG---DRMRHVPPEKALDHVLGYTVAVDITARDVQKKDLQWVRAKSAD 165
Query: 283 EYVPLGPFL 291
+++PLGP+L
Sbjct: 166 KFLPLGPWL 174
>pdb|1WZO|A Chain A, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
pdb|1WZO|B Chain B, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
pdb|1WZO|C Chain C, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
pdb|1WZO|D Chain D, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
Length = 246
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 15/66 (22%)
Query: 238 FELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARD---------IQAW---EYV 285
+E+E+A VVG K + +A D++ G + ND ARD I+A ++
Sbjct: 96 YEVELAVVVG---RPMKRVRAKDALDYVLGYTIANDLVARDYVTNTFRPPIRAKGRDTFL 152
Query: 286 PLGPFL 291
PLGPFL
Sbjct: 153 PLGPFL 158
>pdb|3QDF|A Chain A, Crystal Structure Of 2-Hydroxyhepta-2,4-Diene-1,7-Dioate
Isomerase From Mycobacterium Marinum
Length = 268
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 238 FELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQA----WEYVPLGPFLGK 293
FE E+A V+G K + +A D+I G + ND SARD Q W G
Sbjct: 120 FEGELAIVIG---RPCKDVSAAQAVDNILGYTIGNDVSARDQQKSDGQWTRAK-----GH 171
Query: 294 SFGTTLSPWIVT 305
+ PWIVT
Sbjct: 172 DTFCPVGPWIVT 183
>pdb|1BY7|A Chain A, Human Plasminogen Activator Inhibitor-2. Loop (66-98)
Deletion Mutant
pdb|1JRR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletionmutant] Complexed With Peptide Mimicking The
Reactive Center Loop
Length = 382
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 300 SPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQI 343
+P+ L+ L PF +S ++ P + YL EK++ Y L+ QI
Sbjct: 177 TPFEKKLNGLYPFRVNSAQRTPVQMMYLREKLNIGYIEDLKAQI 220
>pdb|3S9I|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Malate
Synthase In Complex With 2-4-dioxo-4-phenylbutanoic Acid
Inhibitor
pdb|3S9Z|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Malate
Synthase In Complex With
4-(2-bromophenyl)-2,4-dioxobutanoic Acid Inhibitor
pdb|3SAD|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Malate
Synthase In Complex With
4-(2-mehtylphenyl)-2,4-dioxobutanoic Acid Inhibitor
pdb|3SAZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Malate
Synthase In Complex With
4-(3-bromophenyl)-2,4-dioxobutanoic Acid Inhibitor
pdb|3SB0|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Malate
Synthase In Complex With
4-(2-chloro-6-fluoro-3-methylphenyl)-2,4-dioxobutanoic
Acid Inhibitor
Length = 741
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 371 AHHTINGCNLRSGDLL----GTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDG 426
A +N N R G L GT I PE+ G T+N + + + RKFL+D
Sbjct: 124 ARFALNAANARWGSLYDALYGTDVI----PETDGAEKGPTYNKVRGDKVIAYARKFLDDS 179
Query: 427 DEVTFTGFCKGNGYTVGFG 445
++ F G+TV G
Sbjct: 180 VPLSSGSFGDATGFTVQDG 198
>pdb|1N8I|A Chain A, Biochemical And Structural Studies Of Malate Synthase From
Mycobacterium Tuberculosis
pdb|1N8W|A Chain A, Biochemical And Structural Studies Of Malate Synthase From
Mycobacterium Tuberculosis
pdb|1N8W|B Chain B, Biochemical And Structural Studies Of Malate Synthase From
Mycobacterium Tuberculosis
Length = 741
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 371 AHHTINGCNLRSGDLL----GTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDG 426
A +N N R G L GT I PE+ G T+N + + + RKFL+D
Sbjct: 124 ARFALNAANARWGSLYDALYGTDVI----PETDGAEKGPTYNKVRGDKVIAYARKFLDDS 179
Query: 427 DEVTFTGFCKGNGYTVGFG 445
++ F G+TV G
Sbjct: 180 VPLSSGSFGDATGFTVQDG 198
>pdb|2GQ3|A Chain A, Mycobacterium Tuberculosis Malate Synthase In Complex With
Magnesium, Malate, And Coenzyme A
pdb|2GQ3|B Chain B, Mycobacterium Tuberculosis Malate Synthase In Complex With
Magnesium, Malate, And Coenzyme A
Length = 729
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 371 AHHTINGCNLRSGDLL----GTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDG 426
A +N N R G L GT I PE+ G T+N + + + RKFL+D
Sbjct: 126 ARFALNAANARWGSLYDALYGTDVI----PETDGAEKGPTYNKVRGDKVIAYARKFLDDS 181
Query: 427 DEVTFTGFCKGNGYTVGFG 445
++ F G+TV G
Sbjct: 182 VPLSSGSFGDATGFTVQDG 200
>pdb|2ARQ|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletion Mutant] Complexed With Peptide
N-Acetyl-Teaaagdggvmtgr-Oh
pdb|2ARR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletion Mutant] Complexed With Peptide
N-acetyl-teaaagmggvmtgr-oh
Length = 382
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 300 SPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQI 343
+P+ L+ L PF +S ++ P + YL EK++ Y L+ QI
Sbjct: 177 TPFEKKLNGLFPFRVNSAQRTPVQMMYLREKLNIGYIEDLKAQI 220
>pdb|2C4M|A Chain A, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|B Chain B, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|C Chain C, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|D Chain D, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control
Length = 796
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 49/125 (39%), Gaps = 21/125 (16%)
Query: 295 FGTTLSPWIVTLDALEPFA---CDSPKQDPQPLPYLAEKISKNYDIS----------LEV 341
FG +P V A+ D DP+ P L +NY++S +
Sbjct: 560 FGAKAAPGYVRAKAIIKLINSIADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSE 619
Query: 342 QIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLG--TGTISGPEPESL 399
QI AGKE S SN K++ + L T++G N+ D +G I G E L
Sbjct: 620 QISTAGKEASGT---SNMKFM---MNGALTLGTMDGANVEIVDSVGEENAYIFGARVEEL 673
Query: 400 GCLLE 404
L E
Sbjct: 674 PALRE 678
>pdb|4DBF|A Chain A, Crystal Structures Of Cg1458
pdb|4DBF|B Chain B, Crystal Structures Of Cg1458
pdb|4DBH|A Chain A, Crystal Structure Of Cg1458 With Inhibitor
pdb|4DBH|B Chain B, Crystal Structure Of Cg1458 With Inhibitor
Length = 288
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 14/68 (20%)
Query: 235 KLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQ----AWE------- 283
K++FE E+A V+G + K + ++ + G ++ND S+RD+Q W
Sbjct: 132 KVEFEGELAVVIG---KPCKNVKADDWKSVVLGFTIINDVSSRDLQFADGQWARAKGIDT 188
Query: 284 YVPLGPFL 291
+ P+GP++
Sbjct: 189 FGPIGPWI 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,365,979
Number of Sequences: 62578
Number of extensions: 614252
Number of successful extensions: 1072
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1051
Number of HSP's gapped (non-prelim): 21
length of query: 456
length of database: 14,973,337
effective HSP length: 102
effective length of query: 354
effective length of database: 8,590,381
effective search space: 3040994874
effective search space used: 3040994874
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)