Query 012786
Match_columns 456
No_of_seqs 258 out of 1890
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 06:17:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012786.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012786hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02856 fumarylacetoacetase 100.0 2E-106 4E-111 835.0 40.3 418 3-456 5-424 (424)
2 TIGR01266 fum_ac_acetase fumar 100.0 1E-104 3E-109 820.2 38.4 413 5-455 1-415 (415)
3 KOG2843 Fumarylacetoacetase [C 100.0 1.9E-90 4.1E-95 668.9 19.8 414 4-455 1-417 (420)
4 COG0179 MhpD 2-keto-4-pentenoa 100.0 2.6E-54 5.7E-59 425.6 20.0 215 114-454 47-265 (266)
5 TIGR02303 HpaG-C-term 4-hydrox 100.0 1.1E-49 2.5E-54 389.7 21.7 216 109-453 26-244 (245)
6 KOG1535 Predicted fumarylaceto 100.0 6.5E-45 1.4E-49 338.8 15.4 177 178-405 23-202 (217)
7 PRK10691 hypothetical protein; 100.0 4.9E-43 1.1E-47 337.8 20.2 189 179-452 28-219 (219)
8 PRK15203 4-hydroxyphenylacetat 100.0 4.6E-43 1E-47 367.3 19.3 170 194-452 33-204 (429)
9 PRK15203 4-hydroxyphenylacetat 100.0 4.6E-41 9.9E-46 352.3 20.1 192 177-454 232-425 (429)
10 PRK12764 hypothetical protein; 100.0 1.1E-39 2.3E-44 347.6 19.5 192 180-454 34-229 (500)
11 PF01557 FAA_hydrolase: Fumary 100.0 5.7E-40 1.2E-44 314.9 15.4 185 194-452 30-218 (218)
12 TIGR02305 HpaG-N-term 4-hydrox 100.0 3.1E-38 6.7E-43 301.3 18.2 173 194-451 31-205 (205)
13 TIGR03220 catechol_dmpE 2-oxop 99.9 1.6E-21 3.4E-26 192.3 15.8 172 194-412 71-250 (255)
14 PF09298 FAA_hydrolase_N: Fuma 99.8 1.7E-20 3.8E-25 162.1 6.0 105 18-122 1-107 (107)
15 PRK11342 mhpD 2-keto-4-penteno 99.8 3.2E-19 6.9E-24 176.6 15.3 170 204-453 85-261 (262)
16 TIGR02312 HpaH 2-oxo-hepta-3-e 99.7 4.4E-16 9.6E-21 154.7 16.1 174 194-412 76-261 (267)
17 TIGR03218 catechol_dmpH 4-oxal 99.4 3.3E-12 7.1E-17 126.8 16.4 173 195-413 80-259 (263)
18 COG3970 Fumarylacetoacetate (F 99.3 1.1E-11 2.4E-16 122.8 12.4 186 196-455 169-357 (379)
19 COG3971 2-keto-4-pentenoate hy 99.3 2.1E-11 4.5E-16 119.1 10.6 167 203-415 85-259 (264)
20 PF11010 DUF2848: Protein of u 97.8 0.00028 6E-09 67.1 11.9 167 178-408 12-182 (194)
21 COG3802 GguC Uncharacterized p 97.6 0.00027 5.9E-09 69.5 8.2 142 195-392 140-292 (333)
22 PF10370 DUF2437: Domain of un 80.6 1.7 3.6E-05 32.6 2.8 26 20-47 1-26 (50)
23 PRK11342 mhpD 2-keto-4-penteno 61.5 12 0.00026 37.4 4.6 11 421-431 220-230 (262)
24 PRK06488 sulfur carrier protei 55.9 50 0.0011 25.5 6.4 19 350-373 6-24 (65)
25 cd05790 S1_Rrp40 S1_Rrp40: Rrp 44.5 53 0.0012 27.5 5.1 15 419-433 46-60 (86)
26 cd05694 S1_Rrp5_repeat_hs2_sc2 43.2 44 0.00096 26.7 4.4 60 380-442 2-64 (74)
27 smart00652 eIF1a eukaryotic tr 37.9 50 0.0011 27.4 3.9 16 419-434 40-55 (83)
28 TIGR00008 infA translation ini 35.2 61 0.0013 26.1 3.9 16 419-434 41-56 (68)
29 PRK06083 sulfur carrier protei 33.4 2.2E+02 0.0048 23.6 7.2 29 333-373 15-43 (84)
30 cd05793 S1_IF1A S1_IF1A: Trans 33.3 64 0.0014 26.4 3.8 16 419-434 35-50 (77)
31 PRK12442 translation initiatio 29.4 67 0.0015 27.2 3.4 16 419-434 43-58 (87)
32 PF01176 eIF-1a: Translation i 29.0 48 0.001 26.0 2.4 16 419-434 38-53 (65)
33 COG0361 InfA Translation initi 28.9 59 0.0013 26.7 2.9 16 419-434 43-58 (75)
34 TIGR03220 catechol_dmpE 2-oxop 28.4 63 0.0014 32.1 3.7 22 420-449 232-253 (255)
35 cd03701 IF2_IF5B_II IF2_IF5B_I 27.1 80 0.0017 26.6 3.6 18 377-394 24-41 (95)
36 PRK04012 translation initiatio 27.0 93 0.002 26.9 3.9 16 419-434 56-71 (100)
37 cd04456 S1_IF1A_like S1_IF1A_l 25.3 1.1E+02 0.0024 25.0 4.0 16 419-434 35-50 (78)
38 COG1096 Predicted RNA-binding 24.2 2.3E+02 0.0049 27.3 6.3 55 379-433 7-72 (188)
39 PLN00208 translation initiatio 23.1 98 0.0021 28.6 3.5 16 419-434 67-82 (145)
40 PRK08582 hypothetical protein; 22.2 1.1E+02 0.0024 27.7 3.7 53 378-433 1-60 (139)
41 PF11305 DUF3107: Protein of u 21.5 68 0.0015 26.3 2.0 28 418-446 46-74 (74)
42 PTZ00329 eukaryotic translatio 20.1 1.3E+02 0.0027 28.2 3.6 16 419-434 67-82 (155)
43 cd03702 IF2_mtIF2_II This fami 20.1 86 0.0019 26.6 2.4 18 376-393 23-40 (95)
No 1
>PLN02856 fumarylacetoacetase
Probab=100.00 E-value=1.8e-106 Score=834.95 Aligned_cols=418 Identities=75% Similarity=1.300 Sum_probs=388.2
Q ss_pred cccccccCCCCCCCCCCCCcEEEecCCCCCCceEEEECCeEEechhhhhcCCCCCCCccCCCccCcccHHHHHhcCchhH
Q 012786 3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAW 82 (456)
Q Consensus 3 ~~~~~~~~~~~~f~~~n~p~g~fs~~~~~~~r~Gv~~gd~vvDL~~~~~~~~~~~~~~~~~~~~~~~~l~~fl~~g~~~~ 82 (456)
++|||++++||||||+|||||+||+.+++.+|+||+|||+|+||+++...+++.+.....+.+|.+++||.|+++|+++|
T Consensus 5 ~~swv~~~~~~~F~i~NlP~Gvfs~~~~~~~r~gvaigd~vldl~~~~~~~~~~~~~~~~~~~f~~~~Ln~f~alg~~~~ 84 (424)
T PLN02856 5 LKSFIDVAPDSDFPIQNLPYGVFSPESGATPRPGVAIGDYVLDLSALSEAGLFDGPLLSDSDCFSQPTLNKFMAMGRPAW 84 (424)
T ss_pred ccccccCCCCCCCCccccCeeEEECCCCCCceeEEEeCCEEEeHHHHHhcCCCCcccccccccccCcCHHHHHhCCHHHH
Confidence 56999999999999999999999998877999999999999999999988877653222347999999999999999999
Q ss_pred HHHHHHHHHHHhcCchhhccchhcccccccccCCcEEeCCcccCccccccccHHHHHhhchhccCCCCCCCcchhhhhhh
Q 012786 83 KEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKS 162 (456)
Q Consensus 83 ~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~v~l~~Pv~~~~~~d~~~~~~H~~~~g~~~~~~~~~~~~~~~~~~~~ 162 (456)
+++|+.|++++.+....++++..+....++|+++|+|++|+.+++|+||+||++|+.|+|++|++.+++++|||+
T Consensus 85 ~~~R~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~v~l~~P~~~~~~~df~~~~~Ha~n~g~~fr~~~~~l~p~~~----- 159 (424)
T PLN02856 85 KEARSTLQRLLSADEPALRDNSELRKKAFHPMSDVEMLLPAVIGDYTDFFSSREHATNVGTMFRGPENALNPNWL----- 159 (424)
T ss_pred HHHHHHHHHHhhcCCcccccchhhhccceeehhhceEcCCCccceEEEEecHHHHHHHhhhhccCCccCCCcccc-----
Confidence 999999999998776656666666677899999999999999999999999999999999999987778899997
Q ss_pred cccccceeeeehhhhhhhhhhhccccCCCCCCccEEEeCCCCceeeCCCeeecCCCCcCC-CCCCCCCCCCCCCceeeeE
Q 012786 163 TSKQGIVSVLTLVYYSIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAP-SGNSPPPFGPSQKLDFELE 241 (456)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~P~~f~k~~ssv~~~g~~I~~P~g~~~~-~~~~~p~~~~s~~lD~E~E 241 (456)
+.|++|+|++|||++||++|++|.+|+.+ .+...|.|++|+++|||+|
T Consensus 160 -------------------------------~~Pv~y~gr~sSvv~sg~~I~rP~gq~~~~~~~~~p~f~~s~~lDyE~E 208 (424)
T PLN02856 160 -------------------------------HLPIGYHGRASSVVPSGTDIRRPRGQLHPNDGSSRPYFGPSAKLDFELE 208 (424)
T ss_pred -------------------------------cCCCEEcCCCceEEcCCCceeCCCCCccCCCCCCCCcccCcCceEEEEE
Confidence 88999999999999999999999998655 3334499999999999999
Q ss_pred EEEEEcCCCCCCCCCCHhHHhhhheeEEEeeccchhhHhhhhhcCCCCccccccCCCCCCccccccccCCccCCCCCCCC
Q 012786 242 MAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDP 321 (456)
Q Consensus 242 LavVIGk~l~~g~~vs~eeA~~~I~Gytl~ND~SaRdiQ~~e~~~lg~~~~KsfdtslGPwiVt~del~~~~~~~~~~d~ 321 (456)
||+||||++++|++|++++|++||||||++|||||||+|.|||+++|||+||+|+|+|||||||.|+++++|+..+.+||
T Consensus 209 LavVIGk~~~~g~~I~~~~A~d~IfGytl~ND~SARDiQ~wE~~plgpf~gKsF~t~igPwIVt~dal~p~r~~~~~~dp 288 (424)
T PLN02856 209 MAAFVGPGNELGKPIPVNEAKDHIFGLVLMNDWSARDIQKWEYVPLGPFLGKSFATTISPWIVTLDALEPFRCDAPAQDP 288 (424)
T ss_pred EEEEECcCccccCCCCHHHHHhhheEEEEeeechhhhhhhhhcccCCcccccCCCCCCcCeEEcccccccccccccccCc
Confidence 99999999888999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred CCCccccccCCCceeEEEEEEEeeCCCCCCeEEEecccccccCCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCc
Q 012786 322 QPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGC 401 (456)
Q Consensus 322 ~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd 401 (456)
..+|||++++..+++|+|+|.++.+++.||+++|++|+++|||+++|||+|++|++|+|+|||||+||||+|+++.+.||
T Consensus 289 ~~l~yl~~~~~~~~~i~l~v~v~~nG~~ng~~~q~~nt~~M~ws~~qlIah~~s~g~tL~pGDLi~TGTpsG~~~~~~G~ 368 (424)
T PLN02856 289 PPLPYLAEKNRKSYDISLEVAIKPAGQSKASVVCRSNFKHLYWTLAQQLAHHTVNGCNLRPGDLLGSGTISGPEPGSLGC 368 (424)
T ss_pred ccccccccccccceeEEEEEEEeeCCcccceeEEcCCHHHcCCCHHHHHHHHHhCCeecCCCCEEEeCCCCCCccCCCCC
Confidence 99999999998999999999887666668999999999999999999999877999999999999999999999999999
Q ss_pred EEEEEecCccceec-CCCCCCCCCCCCEEEEEEEEeCCCceeeeeceeeEEeeCCC
Q 012786 402 LLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP 456 (456)
Q Consensus 402 ~lE~~~~G~~~l~~-~~~~~~fL~~GD~V~~~~~~~~~~~~~g~G~~~~~v~p~~~ 456 (456)
++|++|+|++++++ +++.++||+|||+|+|++||.++|++||||+|+++|+||.+
T Consensus 369 llElt~~G~~p~~l~~g~~r~fL~dGD~V~l~g~~~~~g~~igfG~~~g~v~pa~~ 424 (424)
T PLN02856 369 LLELTWAGSREVSLEGGTRRKFLEDGDEVVLSGWCKGDGYRVGFGTCSGKVLPALP 424 (424)
T ss_pred EEEEEeCCccceEeccCCccccCCCCCEEEEEEEECCCCccEeeeeeeeEEecCCC
Confidence 99999999999999 78889999999999999999999999999999999999964
No 2
>TIGR01266 fum_ac_acetase fumarylacetoacetase. This enzyme catalyzes the final step in the breakdown of tyrosine or phenylalanine to fumarate and acetoacetate.
Probab=100.00 E-value=1.3e-104 Score=820.17 Aligned_cols=413 Identities=61% Similarity=1.112 Sum_probs=383.1
Q ss_pred cccccCCCCCCCCCCCCcEEEecCCCCCCceEEEECCeEEechhhhhcCCCCCC-CccCCCccCcccHHHHHhcCchhHH
Q 012786 5 SFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGP-ILKDSDCFLQPNLNKFLSLGRPAWK 83 (456)
Q Consensus 5 ~~~~~~~~~~f~~~n~p~g~fs~~~~~~~r~Gv~~gd~vvDL~~~~~~~~~~~~-~~~~~~~~~~~~l~~fl~~g~~~~~ 83 (456)
|||++++||||||+|||||+||+.+++.+|+||+|||+|+||+++.. ++.+. ....+.+|.+++||.|+++|+++|+
T Consensus 1 swv~~~~~~~f~i~nlP~gvf~~~~~~~pR~gv~igd~vlDL~~~~~--~~~~~~~~~~~~~f~~~~Ln~f~alg~~~~~ 78 (415)
T TIGR01266 1 SFVPVAENSDFPIQNLPYGVFSTQANSSPRIGVAIGDQILDLSVIAH--LFTGPALSKHQHVFDQSTLNAFMALGRPAWK 78 (415)
T ss_pred CccCCCCCCCCCccccCeEEEECCCCCCceeEEEECCEEEeHHHHHh--hhcCccccccccccCCCCHHHHHhCCHHHHH
Confidence 89999999999999999999999877789999999999999999875 34332 1223468999999999999999999
Q ss_pred HHHHHHHHHHhcCchhhccchhcccccccccCCcEEeCCcccCccccccccHHHHHhhchhccCCCCCCCcchhhhhhhc
Q 012786 84 EARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKST 163 (456)
Q Consensus 84 ~~r~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~v~l~~Pv~~~~~~d~~~~~~H~~~~g~~~~~~~~~~~~~~~~~~~~~ 163 (456)
++|+.|+.++.+....++++..+.+..++|+++|+||+|+++++|+|||||++|++|+|++|++++++++|||+
T Consensus 79 ~~R~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~v~l~lP~~i~dytDf~~~~~Ha~n~g~~fr~~~~~l~p~~~------ 152 (415)
T TIGR01266 79 EARARLQNLLSASQARLRDNAALRQRALTPQAEATMHLPAQIGDYTDFYSSIQHATNVGIMFRGKENALLPNWK------ 152 (415)
T ss_pred HHHHHHHHHhhcCCccccccccccccceeehhHceecCCccchhhhhhhchHHHHHHHHhhccCCCCCCCcccc------
Confidence 99999999998776666667667777899999999999999999999999999999999999988889999998
Q ss_pred ccccceeeeehhhhhhhhhhhccccCCCCCCccEEEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEE
Q 012786 164 SKQGIVSVLTLVYYSIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMA 243 (456)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~P~~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELa 243 (456)
+.|++|+|++|||+++|++|++|.+|..+.+...|.|++|+++|||+|||
T Consensus 153 ------------------------------~~Pv~y~g~~sSvv~sg~~I~rP~gq~~~~~~~~p~f~ps~~lD~E~ELa 202 (415)
T TIGR01266 153 ------------------------------HLPVGYHGRASSIVVSGTPLRRPMGQTLPDNAKPPVFGPCKLLDMELEMA 202 (415)
T ss_pred ------------------------------cCCcEeccCCceEEcCCCceeCCCccccCCcccCCcccccCceEEEEEEE
Confidence 88999999999999999999999998766555569999999999999999
Q ss_pred EEEcCCCCCCCCCCHhHHhhhheeEEEeeccchhhHhhhhhcCCCCccccccCCCCCCccccccccCCccCCCCCCCCCC
Q 012786 244 AVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQP 323 (456)
Q Consensus 244 vVIGk~l~~g~~vs~eeA~~~I~Gytl~ND~SaRdiQ~~e~~~lg~~~~KsfdtslGPwiVt~del~~~~~~~~~~d~~~ 323 (456)
+||||++++|++|++++|++||||||++|||||||+|.|||+++|||+||+|+|+|||||||.|+|+++++..+.+||.+
T Consensus 203 vvIGk~~~~g~~vs~e~A~~~IfGy~l~ND~SARDiQ~wE~~plgpf~~KsF~tsigPwIVT~daL~p~r~~~~~~dp~p 282 (415)
T TIGR01266 203 FFVGPGNRLGEPIPISKAEEHIFGVVLMNDWSARDIQAWEYVPLGPFLAKSFGTTISPWVVPIDALEPFRVPNPKQDPKP 282 (415)
T ss_pred EEECcCcccCCcCCHHHHHhhheEEEEeeEcchhhhhhhhccccCccccccCCCCCcCeEeccccccccccccccccccc
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred CccccccCCCceeEEEEEEEeeCCCCCCeEEEecccccccCCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCcEE
Q 012786 324 LPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLL 403 (456)
Q Consensus 324 ~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd~l 403 (456)
+|||++.++..++|+|++++|++++.+.+++|++|+++|+|+++|||+|+++++|+|+|||||+||||+|+++.+.||++
T Consensus 283 l~yL~~~~~~~~~l~l~v~vnge~~~~~~~~q~~~~~~M~ws~~qlIah~S~~g~tL~pGDLi~TGTpsG~~~~~~G~~l 362 (415)
T TIGR01266 283 LPYLCHDAPYTFDINLEVSLKGEGMSEPATICRSNFKHMYWTMLQQLAHHSVNGCNLRPGDLLGSGTISGSEPGSFGSML 362 (415)
T ss_pred cccccccCCCcceeEEEEEEecCcCcccceEEcCCHHhcCcCHHHHHHHHhcCCcccCCCCEEEeCCCCCCcccCCCcEE
Confidence 99999998888999999999876655667999999999999999999999558999999999999999999999999999
Q ss_pred EEEecCccceec-CCCCCCCCCCCCEEEEEEEEeCCCceeeeeceeeEEeeCC
Q 012786 404 ELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPST 455 (456)
Q Consensus 404 E~~~~G~~~l~~-~~~~~~fL~~GD~V~~~~~~~~~~~~~g~G~~~~~v~p~~ 455 (456)
|++++|+.++.+ +|+.++||+|||+|+|++||.++|++||||+|+++|+||.
T Consensus 363 E~t~~g~~~v~l~~g~~r~fL~dGD~V~~~~~~~~~g~~igfGe~~g~i~pa~ 415 (415)
T TIGR01266 363 ELSWKGKKPIDVGQGETRTFLEDGDEVILRGHCQGEGYRVGFGECAGKVLPAL 415 (415)
T ss_pred EEEeCCeeeeecCCCCCCCCCCCCCEEEEEEEECCCCCcEeeeeeeeEEecCC
Confidence 999999999999 7888999999999999999999999999999999999984
No 3
>KOG2843 consensus Fumarylacetoacetase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-90 Score=668.88 Aligned_cols=414 Identities=59% Similarity=1.051 Sum_probs=393.3
Q ss_pred ccccccCCCCCCCCCCCCcEEEecCCCCCCceEEEECCeEEechhhhhcCCCCCCC-ccCCCccCcccHHHHHhcCchhH
Q 012786 4 QSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPI-LKDSDCFLQPNLNKFLSLGRPAW 82 (456)
Q Consensus 4 ~~~~~~~~~~~f~~~n~p~g~fs~~~~~~~r~Gv~~gd~vvDL~~~~~~~~~~~~~-~~~~~~~~~~~l~~fl~~g~~~~ 82 (456)
+|++.++.+++|||+|+|||+||+..+..+++|++|||.|.+|+...+ +++++. .+.+++|.+++||+|+.++.++|
T Consensus 1 ~sf~~v~~~sdfpi~nlpygvfst~~d~~~~igvaIgdqIl~l~~i~~--lf~gp~l~~hQdvf~q~TLN~fMgL~~~AW 78 (420)
T KOG2843|consen 1 KSFVSVPQNSDFPIQNLPYGVFSTKADSSRHIGVAIGDQILNLAEIAN--LFDGPQLKAHQDVFKQSTLNAFMGLDFEAW 78 (420)
T ss_pred CCccccCCCCCCccccccccccccccCCCCcceeehhHHHHHHHHHHH--hhcCcchHHHHHHhhhhhHHHHhCCCHHHH
Confidence 478899999999999999999999999999999999999999998876 455533 35789999999999999999999
Q ss_pred HHHHHHHHHHHhcCchhhccchhcccccccccCCcEEeCCcccCccccccccHHHHHhhchhccCCCCCCCcchhhhhhh
Q 012786 83 KEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKS 162 (456)
Q Consensus 83 ~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~v~l~~Pv~~~~~~d~~~~~~H~~~~g~~~~~~~~~~~~~~~~~~~~ 162 (456)
.++|..+|++++.+.+.++++..++.-..+|.++++||+|-++++|+|||.+++|+.|+|-+||+.++++.|||.
T Consensus 79 ~eaR~~~Q~LLs~~~a~Lrdn~~Lr~~a~v~Qs~atmHLPAqIGDYTDFYSSihHATNVGIMFRgkeNALMPNW~----- 153 (420)
T KOG2843|consen 79 DEARSQTQKLLSKGCAELRDNVDLRAVAIVPQSEATMHLPAQIGDYTDFYSSIHHATNVGIMFRGKENALMPNWR----- 153 (420)
T ss_pred HHHHHHHHHHhhcchhhhccccceeeeeeeccccceeccchhhcchhhhhhhhhhccceeEEEeccccccCCccc-----
Confidence 999999999999988889999999999999999999999999999999999999999999999999999999997
Q ss_pred cccccceeeeehhhhhhhhhhhccccCCCCCCccEEEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEE
Q 012786 163 TSKQGIVSVLTLVYYSIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEM 242 (456)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~P~~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~EL 242 (456)
+.|+.|++++|||+.+|+||+||-||..|.+.-.|.|++|+.+|+|+|+
T Consensus 154 -------------------------------hLPVGYHGRASSvVVSGTpirRP~GQtkpddae~PvfGacKLlDfELEM 202 (420)
T KOG2843|consen 154 -------------------------------HLPVGYHGRASSVVVSGTPIRRPLGQTKPDDAEKPVFGACKLLDFELEM 202 (420)
T ss_pred -------------------------------cccccccCceeeEEEcCCcccCcccCCCCCCCCCCcccchhhccceeee
Confidence 8899999999999999999999999877666666999999999999999
Q ss_pred EEEEc-CCCCCCCCCCHhHHhhhheeEEEeeccchhhHhhhhhcCCCCccccccCCCCCCccccccccCCccCCCCCCCC
Q 012786 243 AAVVG-PGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDP 321 (456)
Q Consensus 243 avVIG-k~l~~g~~vs~eeA~~~I~Gytl~ND~SaRdiQ~~e~~~lg~~~~KsfdtslGPwiVt~del~~~~~~~~~~d~ 321 (456)
|+++| +.+..|.+|+.++|+++|||++++|||||||||.|||+|||||.+|||.|+++||+|+.++|.+|-.+.|++||
T Consensus 203 AFFvGgpgN~LGepipi~kA~~~iFG~vLMNDWSARDIQkWEYVPLGPFlaKsfgTTvSPWVVp~~AL~Pf~v~Np~QdP 282 (420)
T KOG2843|consen 203 AFFVGGPGNQLGEPIPIDKAWKNIFGFVLMNDWSARDIQKWEYVPLGPFLAKSFGTTVSPWVVPTAALKPFVVDNPPQDP 282 (420)
T ss_pred eeEecCCccccCCccchhhhhhheeeEEEecccchhhcccceeecccchhhhhcccccccceeeHhhcCccccCCCCCCC
Confidence 99998 77888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCceeEEEEEEEeeCCCCCCeEEEecccccccCCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCc
Q 012786 322 QPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGC 401 (456)
Q Consensus 322 ~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd 401 (456)
.++|||.+..|-+++|.|+|.+++++.....+++.+|.++|||++-|.++|++-.+|.|+|||+++|||++|..+-.-|+
T Consensus 283 ~plpYL~hd~PftfDINL~Vslkpeg~~~~a~icKsNFKhlYWT~lQQlaHHtVnGCNLRpGDLlaSGTiSGpep~~yGS 362 (420)
T KOG2843|consen 283 EPLPYLRHDIPFTFDINLEVSLKPEGQNEDALICKSNFKHLYWTPLQQLAHHTVNGCNLRPGDLLASGTISGPEPDSYGS 362 (420)
T ss_pred CCCcccccCCCceeeeeeEEEeccCCccccceeecccchhhhhhHHHHhhhcccccccCCccceeccccccCCCCcchhh
Confidence 99999999999999999999999999755689999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCccceec-CCCCCCCCCCCCEEEEEEEEeCCCceeeeeceeeEEeeCC
Q 012786 402 LLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPST 455 (456)
Q Consensus 402 ~lE~~~~G~~~l~~-~~~~~~fL~~GD~V~~~~~~~~~~~~~g~G~~~~~v~p~~ 455 (456)
++|++|.|.+++++ +|+.+.||+|||+|.+++.|+++|++||||+|+++|+||.
T Consensus 363 mLELsWkGtK~~~lg~g~tRKFL~DgDEVii~G~CeknG~RIGFGeC~GkVLPA~ 417 (420)
T KOG2843|consen 363 MLELSWKGTKTLELGGGKTRKFLQDGDEVIIRGHCEKNGLRIGFGECVGKVLPAH 417 (420)
T ss_pred hhhhhhcCceeeecCCchhhhhhhcCCeEEEEeeecCCceEEecccccccccccc
Confidence 99999999999999 6888999999999999999999999999999999999984
No 4
>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.6e-54 Score=425.55 Aligned_cols=215 Identities=31% Similarity=0.412 Sum_probs=192.5
Q ss_pred cCCcEEeCCcccC--ccccccccHHHHHhhchhccCCCCCCCcchhhhhhhcccccceeeeehhhhhhhhhhhccccCCC
Q 012786 114 MGKVEMLLPMEIG--DYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIFHLQVYRVVPYF 191 (456)
Q Consensus 114 l~~v~l~~Pv~~~--~~~d~~~~~~H~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 191 (456)
+.++++.+|+.++ .|+++.||.+|++++++.. +.|
T Consensus 47 ~~~~~~~~~~~~~~ki~cvG~NY~~Ha~E~~~~~-----------------------------------------~~p-- 83 (266)
T COG0179 47 LAEVRLLAPLPPPGKIVCVGRNYADHAEEMGKDR-----------------------------------------DIP-- 83 (266)
T ss_pred ccccccccCCCCCCcEEEEechHHHHHHHhccCC-----------------------------------------CCC--
Confidence 6788899999754 4688999999999997421 012
Q ss_pred CCCccEEEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCCCHhHHhhhheeEEEe
Q 012786 192 RFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLM 271 (456)
Q Consensus 192 ~~~~P~~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~vs~eeA~~~I~Gytl~ 271 (456)
..|++|.|+++++++++++|.+|.. +.++|||+|||+||||+ |++|++++|++||+|||++
T Consensus 84 --~~P~~F~K~~~a~~~~~~~i~~P~~--------------s~~~dyE~ELavvIGk~---~~~v~~e~A~d~I~GYti~ 144 (266)
T COG0179 84 --EEPVFFLKPPTAVIGPNDPIPLPPG--------------SKGLDYEGELAVVIGKR---GKDVSVEDALDYIAGYTIG 144 (266)
T ss_pred --CCCeeeccCcccccCCCCceECCCC--------------CCCcceeEEEEEEECCc---CCCCCHHHHHhhheEEeee
Confidence 6799999999999999999999986 78999999999999999 9999999999999999999
Q ss_pred eccchhhHhhhhhcCCCCccccccCCC--CCCccccccccCCccCCCCCCCCCCCccccccCCCceeEEEEEEEeeCCCC
Q 012786 272 NDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKE 349 (456)
Q Consensus 272 ND~SaRdiQ~~e~~~lg~~~~Ksfdts--lGPwiVt~del~~~~~~~~~~d~~~~~~l~~~~~~~l~i~l~V~~~~~~~~ 349 (456)
||||+||+|.+++ ..+|++||+|||+ +||||||.+++.+ +.++.|+++|
T Consensus 145 nD~T~Rd~Q~~~~-~~~w~~aK~~d~~~Pigp~iv~~~e~~d--------------------~~~l~l~~~v-------- 195 (266)
T COG0179 145 NDVTARDLQMEEK-GRPWTRAKGFDTFAPVGPWIVTKDEISD--------------------PQNLPLSLRV-------- 195 (266)
T ss_pred eecchhcchhhhh-cCCcccccccCCCCCceeEEeccccCCC--------------------CccceEEEEE--------
Confidence 9999999997643 3588999999995 9999999988764 3568899999
Q ss_pred CCeEEEecccccccCCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCcEEEEEecCccceecCCCCCCCCCCCCEE
Q 012786 350 DSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEV 429 (456)
Q Consensus 350 NGe~~q~~~t~~m~~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~G~~~l~~~~~~~~fL~~GD~V 429 (456)
||+++|+++|++|+|++++||+|+ |++|||+|||||+||||+|++ ||++||+|
T Consensus 196 NGe~~Q~g~t~~Mi~~i~~lI~~l-S~~~tL~pGDvI~TGTP~Gvg--------------------------~l~~GD~v 248 (266)
T COG0179 196 NGEVRQRGNTSDMIFSIPELIAYL-SRFMTLEPGDVILTGTPSGVG--------------------------FLKPGDVV 248 (266)
T ss_pred CCEEEecCcHHHcccCHHHHHHHH-hCCcccCCCCEEEeCCCCCcc--------------------------cCCCCCEE
Confidence 999999999999999999999998 899999999999999999974 68999999
Q ss_pred EEEEEEeCCCceeeeeceeeEEeeC
Q 012786 430 TFTGFCKGNGYTVGFGTCSGKIVPS 454 (456)
Q Consensus 430 ~~~~~~~~~~~~~g~G~~~~~v~p~ 454 (456)
++++ + |||+|+|+|+..
T Consensus 249 ~~~i--e------giG~l~n~v~~~ 265 (266)
T COG0179 249 EVEI--E------GIGELENTVVKE 265 (266)
T ss_pred EEEe--c------ceeEEEEEEeeC
Confidence 9885 5 899999999875
No 5
>TIGR02303 HpaG-C-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit. This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related N-terminal domain (TIGR02305). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
Probab=100.00 E-value=1.1e-49 Score=389.65 Aligned_cols=216 Identities=24% Similarity=0.346 Sum_probs=190.3
Q ss_pred ccccccCCcEEeCCcccCc-cccccccHHHHHhhchhccCCCCCCCcchhhhhhhcccccceeeeehhhhhhhhhhhccc
Q 012786 109 KSLVPMGKVEMLLPMEIGD-YTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIFHLQVYRV 187 (456)
Q Consensus 109 ~~~~pl~~v~l~~Pv~~~~-~~d~~~~~~H~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (456)
+..+++++|++++|+.++. ++.+.||.+|+.+++. +
T Consensus 26 ~~~~~~~~v~ll~P~~p~ki~~vg~Ny~~h~~e~~~-------------------------------------------~ 62 (245)
T TIGR02303 26 GRALPPEQVTWLPPFEPGTIFALGLNYADHASELGF-------------------------------------------S 62 (245)
T ss_pred CCccccccceEcCCCCCCeEEEEeCCHHHHHHHhCC-------------------------------------------C
Confidence 4458999999999998654 4557788888887651 1
Q ss_pred cCCCCCCccEEEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCCCHhHHhhhhee
Q 012786 188 VPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFG 267 (456)
Q Consensus 188 ~p~~~~~~P~~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~vs~eeA~~~I~G 267 (456)
.| +.|++|+|+++|++++|++|.+|.. +..+|||+|||+||||+ ++++++++|++||+|
T Consensus 63 ~p----~~P~~F~Kp~~s~~g~~~~i~~P~~--------------~~~ld~E~EL~vvigk~---~~~v~~~~A~~~I~G 121 (245)
T TIGR02303 63 PP----EEPLVFLKGNNTLTGHKGVTYRPKD--------------VRFMHYECELAVVVGKT---AKNVKREDAMDYVLG 121 (245)
T ss_pred CC----CCCEEEEcCcceeeCCCCcEECCCC--------------CCceeEEEEEEEEECCC---CCCCCHHHHhhheeE
Confidence 23 6799999999999999999999976 67899999999999999 999999999999999
Q ss_pred EEEeeccchhhHhhhhhcCCCCccccccCCC--CCCccccccccCCccCCCCCCCCCCCccccccCCCceeEEEEEEEee
Q 012786 268 VMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKP 345 (456)
Q Consensus 268 ytl~ND~SaRdiQ~~e~~~lg~~~~Ksfdts--lGPwiVt~del~~~~~~~~~~d~~~~~~l~~~~~~~l~i~l~V~~~~ 345 (456)
||++||||+||+|...+ .+|.++|+||++ +|||++|++++.+ +.++.|++++
T Consensus 122 ytv~nD~T~Rd~q~~~~--~~~~~aK~~D~~~plGp~i~t~~~~~d--------------------~~~l~i~l~v---- 175 (245)
T TIGR02303 122 YTIANDYAIRDYLENYY--RPNLRVKNRDTFTPIGPWIVDKEDVED--------------------PMNLWLRTYV---- 175 (245)
T ss_pred EEEEeecchHHHHhhhc--CCcccccCCCCCEeeCCcCCCHHHcCC--------------------ccccEEEEEE----
Confidence 99999999999997654 469999999996 9999999998854 2568888888
Q ss_pred CCCCCCeEEEecccccccCCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCcEEEEEecCccceecCCCCCCCCCC
Q 012786 346 AGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLED 425 (456)
Q Consensus 346 ~~~~NGe~~q~~~t~~m~~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~G~~~l~~~~~~~~fL~~ 425 (456)
||+++|++++++|+|++.++|+|+ |+.++|+|||||+||||.|++ .|++
T Consensus 176 ----NGe~~q~g~t~~ml~~v~~Li~~l-s~~~tL~pGDvIlTGTp~g~~--------------------------~l~~ 224 (245)
T TIGR02303 176 ----NGELTQEGNTSDMIFSVAELIEYL-SEFMTLEPGDVILTGTPKGLS--------------------------DVKP 224 (245)
T ss_pred ----CCEEEEecCHHHhccCHHHHHHHH-hcCCCcCCCCEEEcCCCCCCe--------------------------EcCC
Confidence 999999999999999999999998 899999999999999998753 4799
Q ss_pred CCEEEEEEEEeCCCceeeeeceeeEEee
Q 012786 426 GDEVTFTGFCKGNGYTVGFGTCSGKIVP 453 (456)
Q Consensus 426 GD~V~~~~~~~~~~~~~g~G~~~~~v~p 453 (456)
||+|++++ + |+|+++|+|+.
T Consensus 225 GD~v~~~i--~------glG~l~n~v~~ 244 (245)
T TIGR02303 225 GDVVRLEI--E------GVGALENPIVS 244 (245)
T ss_pred CCEEEEEE--c------CceeEEEEEEe
Confidence 99999985 5 99999999973
No 6
>KOG1535 consensus Predicted fumarylacetoacetate hydralase [General function prediction only]
Probab=100.00 E-value=6.5e-45 Score=338.79 Aligned_cols=177 Identities=27% Similarity=0.321 Sum_probs=159.9
Q ss_pred hhhhhhhccccCCCCCCccEEEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCCC
Q 012786 178 SIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPID 257 (456)
Q Consensus 178 ~~~~~~~~~~~p~~~~~~P~~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~vs 257 (456)
..|.+|+++.+| ++|++|.|++||++++|++|..|++ ++.+|||+|||+||||. |++++
T Consensus 23 ~dh~~E~~~~~P----keP~~FlKptss~v~~g~~i~~p~~--------------~~~lh~EvEL~vVigK~---~~~v~ 81 (217)
T KOG1535|consen 23 ADHCKELNNPVP----KEPFFFLKPTSSIVGPGGPIVIPPG--------------SKGLHHEVELAVVIGKK---GSSVK 81 (217)
T ss_pred HHHHHHhCCCCC----CCCeEEeecchhhcCCCCceEcCCC--------------cCccceeEEEEEEeccc---cccCC
Confidence 368899999999 9999999999999999999999987 78999999999999999 99999
Q ss_pred HhHHhhhheeEEEeeccchhhHhhhhhc-CCCCccccccCCC--CCCccccccccCCccCCCCCCCCCCCccccccCCCc
Q 012786 258 VNEAADHIFGVMLMNDWSARDIQAWEYV-PLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKN 334 (456)
Q Consensus 258 ~eeA~~~I~Gytl~ND~SaRdiQ~~e~~-~lg~~~~Ksfdts--lGPwiVt~del~~~~~~~~~~d~~~~~~l~~~~~~~ 334 (456)
+.+|++||+||+++.|+||||+|...+. .++|+.||+|||| +| -+++.+.+.+ +.+
T Consensus 82 ~~~amd~v~Gy~valDmtARd~q~~ak~~g~pw~l~K~~Dtf~Pis-~~vpk~~v~D--------------------p~n 140 (217)
T KOG1535|consen 82 KKDAMDYVGGYAVALDMTARDWQDEAKKKGLPWTLGKGFDTFTPIS-AIVPKEKVPD--------------------PHN 140 (217)
T ss_pred hhhcccccccEEEEeeccchhhhhhhhhcCCCeeeccccCccCccc-ccccHHHCCC--------------------ccc
Confidence 9999999999999999999999987654 4899999999996 99 5667777764 477
Q ss_pred eeEEEEEEEeeCCCCCCeEEEecccccccCCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCcEEEE
Q 012786 335 YDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLEL 405 (456)
Q Consensus 335 l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~ 405 (456)
+.|.|+| ||+++|+++|++|+|+++.+|+|+ |+.+||+|||||+||||.|+|++.+||.+++
T Consensus 141 l~L~l~V--------nG~~~Q~g~T~~mifkip~li~~i-s~~~tL~~GDvILTGTP~GVg~v~~Gd~i~~ 202 (217)
T KOG1535|consen 141 LWLWLRV--------NGETRQTGNTSLMIFKIPDLISRL-SQIMTLEPGDVILTGTPEGVGEVKPGDVIQC 202 (217)
T ss_pred eEEEEEE--------ccEEEecCchhhheecHHHHHHHH-hhheeecCCCEEEecCCCccccccCCCEEEe
Confidence 8888888 999999999999999999999998 8999999999999999999988644444433
No 7
>PRK10691 hypothetical protein; Provisional
Probab=100.00 E-value=4.9e-43 Score=337.75 Aligned_cols=189 Identities=20% Similarity=0.238 Sum_probs=165.6
Q ss_pred hhhhhhccccCCCCCCccEEEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCCCH
Q 012786 179 IFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDV 258 (456)
Q Consensus 179 ~~~~~~~~~~p~~~~~~P~~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~vs~ 258 (456)
.|.+|++.+.| +.|++|.|+++++++++++|.+|.. +..+|||+|||+||||+ ++++++
T Consensus 28 ~h~~e~~~~~p----~~P~~F~K~~~~~~~~~~~i~~P~~--------------~~~ld~E~ELavvigk~---~~~v~~ 86 (219)
T PRK10691 28 KHIKEMGSATP----EEPVLFIKPETALCDLRQPLAIPKD--------------FGSVHHEVELAVLIGAT---LRQATE 86 (219)
T ss_pred HHHHHhCCCCC----CCCEEEECCcceeeCCCCcEECCCC--------------CCCeeEEEEEEEEECCC---CCCCCH
Confidence 46677777777 8899999999999999999999976 67899999999999999 899999
Q ss_pred hHHhhhheeEEEeeccchhhHhhhhhcC-CCCccccccCCC--CCCccccccccCCccCCCCCCCCCCCccccccCCCce
Q 012786 259 NEAADHIFGVMLMNDWSARDIQAWEYVP-LGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNY 335 (456)
Q Consensus 259 eeA~~~I~Gytl~ND~SaRdiQ~~e~~~-lg~~~~Ksfdts--lGPwiVt~del~~~~~~~~~~d~~~~~~l~~~~~~~l 335 (456)
++|++||+||+++||||+||+|.+.... .+|.++|+||++ +|||+++.+...+ +.++
T Consensus 87 ~~a~~~V~gyt~~nDvt~r~~q~~~~~~~~~~~~~K~~D~~~~~gp~i~~~~~~~d--------------------~~~l 146 (219)
T PRK10691 87 EHVRKAIAGYGVALDLTLRDLQGKMKKAGQPWEKAKAFDNSCPISGFIPVAEFTGD--------------------PQNT 146 (219)
T ss_pred HHHhhhheEEEEEEEeEhhhhhhhhccccCCccccccCCCCcCcCCcEEchhccCC--------------------cccc
Confidence 9999999999999999999999876532 468899999995 8999987543222 2567
Q ss_pred eEEEEEEEeeCCCCCCeEEEecccccccCCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCcEEEEEecCccceec
Q 012786 336 DISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL 415 (456)
Q Consensus 336 ~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~G~~~l~~ 415 (456)
.+++++ ||+++|++++++|+|++.++|+|+ |+.++|+|||||+||||+|++
T Consensus 147 ~i~l~v--------NG~~~q~g~~~~mi~~~~~lia~l-s~~~tL~aGDvI~TGTp~g~~-------------------- 197 (219)
T PRK10691 147 TLGLSV--------NGEVRQQGNTADMIHPIVPLIAYM-SRFFTLRAGDVVLTGTPEGVG-------------------- 197 (219)
T ss_pred EEEEEE--------CCEEEEecCHHHhccCHHHHHHHH-hcCCccCCCCEEEcCCCCCCE--------------------
Confidence 888888 999999999999999999999998 899999999999999998753
Q ss_pred CCCCCCCCCCCCEEEEEEEEeCCCceeeeeceeeEEe
Q 012786 416 DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIV 452 (456)
Q Consensus 416 ~~~~~~fL~~GD~V~~~~~~~~~~~~~g~G~~~~~v~ 452 (456)
.|++||+|++++ + |+ +|+++|+
T Consensus 198 ------~l~~GD~v~~~i--~------gl-~~~~~~~ 219 (219)
T PRK10691 198 ------PLQSGDELTVTF--N------GH-SLTTRVL 219 (219)
T ss_pred ------ECCCCCEEEEEE--e------CE-EEEEEeC
Confidence 478999998884 5 88 9999884
No 8
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Probab=100.00 E-value=4.6e-43 Score=367.34 Aligned_cols=170 Identities=21% Similarity=0.223 Sum_probs=150.0
Q ss_pred CccEEEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCCCHhHHhhhheeEEEeec
Q 012786 194 HLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMND 273 (456)
Q Consensus 194 ~~P~~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~vs~eeA~~~I~Gytl~ND 273 (456)
+.|++|+|+++|++++|++|.+|.+ ..+|||+||++||||+ |++|++++|++||+|||++||
T Consensus 33 ~~P~~F~Kp~~al~g~~~~i~~P~~---------------~~~~~E~EL~vvIGk~---~~~v~~~~A~~~V~Gyti~nD 94 (429)
T PRK15203 33 KTAVWFIKPRNTVIRCGEPIPFPQG---------------EKVLSGATVALIVGKT---ATKVREEDAAEYIAGYALAND 94 (429)
T ss_pred CCCEEEecCcceeeCCCCcEECCCC---------------CCceEEEEEEEEECCc---cCCCCHHHHhhheeEEEEEEE
Confidence 8999999999999999999999964 3699999999999999 999999999999999999999
Q ss_pred cchhhHhhhhhcCCCCccccccCCC--CCCccccccccCCccCCCCCCCCCCCccccccCCCceeEEEEEEEeeCCCCCC
Q 012786 274 WSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDS 351 (456)
Q Consensus 274 ~SaRdiQ~~e~~~lg~~~~Ksfdts--lGPwiVt~del~~~~~~~~~~d~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NG 351 (456)
+|+||+|.. .+|.++|+|||+ +||||++.+ +.++.|+++| ||
T Consensus 95 ~t~rd~q~~----~~~~~~K~~D~~~p~Gp~i~~~~------------------------~~~l~i~~~v--------NG 138 (429)
T PRK15203 95 VSLPEESFY----RPAIKAKCRDGFCPIGETVALSN------------------------VDNLTIYTEI--------NG 138 (429)
T ss_pred eechhhccc----CCcccccCCCCCcccCCeEECCC------------------------ccceEEEEEE--------CC
Confidence 999999853 368999999995 999996521 2458889988 99
Q ss_pred eEEEecccccccCCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCcEEEEEecCccceecCCCCCCCCCCCCEEEE
Q 012786 352 CVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTF 431 (456)
Q Consensus 352 e~~q~~~t~~m~~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~G~~~l~~~~~~~~fL~~GD~V~~ 431 (456)
+++|++++++|+|+++++|+|+ |+++||+|||||+||||+|++ +|++||+|++
T Consensus 139 e~~Q~~~t~~Mi~~~~~lis~l-S~~~tL~pGDvI~TGTP~g~~--------------------------~l~~GD~v~~ 191 (429)
T PRK15203 139 RPADHWNTADLQRNAAQLLSAL-SEFATLNPGDAILLGTPQARV--------------------------EIQPGDRVRV 191 (429)
T ss_pred EEEecCCHHHcCCCHHHHHHHH-hCCCCcCCCCEEEcCCCCCce--------------------------ECCCCCEEEE
Confidence 9999999999999999999998 999999999999999999854 4677777776
Q ss_pred EEEEeCCCceeeeeceeeEEe
Q 012786 432 TGFCKGNGYTVGFGTCSGKIV 452 (456)
Q Consensus 432 ~~~~~~~~~~~g~G~~~~~v~ 452 (456)
++ + |+|+++|.|+
T Consensus 192 ~i--~------gig~l~n~v~ 204 (429)
T PRK15203 192 LA--E------GFPPLENPVV 204 (429)
T ss_pred EE--e------CeeEEEEEEE
Confidence 63 3 6777777775
No 9
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Probab=100.00 E-value=4.6e-41 Score=352.31 Aligned_cols=192 Identities=22% Similarity=0.291 Sum_probs=172.3
Q ss_pred hhhhhhhhccccCCCCCCccEEEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCC
Q 012786 177 YSIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPI 256 (456)
Q Consensus 177 ~~~~~~~~~~~~p~~~~~~P~~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~v 256 (456)
|..|.+|++++.| +.|++|.|+++++++++++|.+|.+ +..+|||+|||+||||+ ++++
T Consensus 232 y~~h~~e~~~~~p----~~P~~F~K~~~s~~g~~~~i~~P~~--------------~~~ld~E~ELavVigk~---~~~v 290 (429)
T PRK15203 232 YADHASELEFKPP----EEPLVFLKAPNTLTGDNQTSVRPNN--------------IEYMHYEAELVVVIGKQ---ARKV 290 (429)
T ss_pred HHHHHHHhCCCCC----CCCEEEEcCcceeeCCCCCEECCCC--------------CCceEEEEEEEEEECCC---CCCC
Confidence 3467788887888 8999999999999999999999976 68899999999999999 8999
Q ss_pred CHhHHhhhheeEEEeeccchhhHhhhhhcCCCCccccccCCC--CCCccccccccCCccCCCCCCCCCCCccccccCCCc
Q 012786 257 DVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKN 334 (456)
Q Consensus 257 s~eeA~~~I~Gytl~ND~SaRdiQ~~e~~~lg~~~~Ksfdts--lGPwiVt~del~~~~~~~~~~d~~~~~~l~~~~~~~ 334 (456)
+++||++||+||+++||+|+||+|...+ ..|+.+|+||++ +|||++|.|++.+ +.+
T Consensus 291 ~~~ea~~~V~Gy~~~nD~t~rd~q~~~~--~~w~~~K~~d~~~plGp~~v~~d~~~d--------------------~~~ 348 (429)
T PRK15203 291 SEADAMDYVAGYTVCNDYAIRDYLENYY--RPNLRVKSRDGLTPILSTIVPKEAIPD--------------------PHN 348 (429)
T ss_pred CHHHHhhheeEEEEEEeccchhhhhhhc--CCceEeccCCCCcCCCCCEeChhhcCC--------------------ccc
Confidence 9999999999999999999999996544 468999999995 9999999887754 356
Q ss_pred eeEEEEEEEeeCCCCCCeEEEecccccccCCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCcEEEEEecCcccee
Q 012786 335 YDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLS 414 (456)
Q Consensus 335 l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~G~~~l~ 414 (456)
+.+++++ ||+++|++++++|+|++.++|+|+ |+.++|+|||+|+||||.|++
T Consensus 349 l~i~l~v--------NG~~vq~g~t~~m~~~v~~li~~l-s~~~tL~aGDvI~TGTp~g~~------------------- 400 (429)
T PRK15203 349 LTLRTFV--------NGELRQQGTTADLIFSVPFLIAYL-SEFMTLNPGDMIATGTPKGLS------------------- 400 (429)
T ss_pred eEEEEEE--------CCEEEEeeCHHHhccCHHHHHHHH-hcCCCcCCCCEEEeCCCCCCe-------------------
Confidence 8888888 999999999999999999999998 899999999999999998853
Q ss_pred cCCCCCCCCCCCCEEEEEEEEeCCCceeeeeceeeEEeeC
Q 012786 415 LDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 454 (456)
Q Consensus 415 ~~~~~~~fL~~GD~V~~~~~~~~~~~~~g~G~~~~~v~p~ 454 (456)
+|++||+|++++ + |+|+++|+|+.+
T Consensus 401 -------~l~pGD~v~~~i--~------glG~l~n~v~~~ 425 (429)
T PRK15203 401 -------DVVPGDEVVVEV--E------GVGRLVNRIVSE 425 (429)
T ss_pred -------ECCCCCEEEEEE--c------CceEEEEEEEec
Confidence 479999999884 5 899999999743
No 10
>PRK12764 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=347.62 Aligned_cols=192 Identities=23% Similarity=0.319 Sum_probs=165.5
Q ss_pred hhhhhccccCCCCCCccEEEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCCCHh
Q 012786 180 FHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVN 259 (456)
Q Consensus 180 ~~~~~~~~~p~~~~~~P~~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~vs~e 259 (456)
|.+|+++ .| +.|++|+|++++++++|++|.+|.+ +..+|||+|||+||||+ +++++++
T Consensus 34 ha~e~~~-~p----~~P~~f~K~~~sl~~~g~~I~~p~~--------------~~~l~~E~ELavVIgr~---~~~v~~e 91 (500)
T PRK12764 34 RAAQRGR-TP----AQPSYFLKPSSSLALSGGTVERPAG--------------TELLAFEGEIALVIGRP---ARRVSPE 91 (500)
T ss_pred HHHHhCC-CC----CCCEEEEeccceEeCCCCeEECCCC--------------CCceeEEEEEEEEECCc---CCCCCHH
Confidence 4455443 25 8899999999999999999999976 67899999999999999 8999999
Q ss_pred HHhhhheeEEEeeccchhhHhhhhhcCCCCccccccCCC--CCCccccccccCCccCCCCCCCCCCCccccccCCCceeE
Q 012786 260 EAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDI 337 (456)
Q Consensus 260 eA~~~I~Gytl~ND~SaRdiQ~~e~~~lg~~~~Ksfdts--lGPwiVt~del~~~~~~~~~~d~~~~~~l~~~~~~~l~i 337 (456)
||++||+||+++||+|+||+|..++ ..|+++|+||++ +|||+++.++++. .+++|
T Consensus 92 ea~~~I~Gyt~~nDvt~rD~~~~d~--~~~~~~K~~Dg~~plGp~iv~~~~~d~---------------------~~l~i 148 (500)
T PRK12764 92 DAWSHVAAVTAANDLGVYDLRYADK--GSNLRSKGGDGFTPIGPALISARGVDP---------------------AQLRV 148 (500)
T ss_pred HHHhhheEEEEecceeeehhhhhhc--CCcccccccCccEecCCCccCccccCc---------------------cceEE
Confidence 9999999999999999999997654 246899999995 9999999988742 56888
Q ss_pred EEEEEEeeCCCCCCeEEEecccccccCCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCcEEEEEecCccceecCC
Q 012786 338 SLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDG 417 (456)
Q Consensus 338 ~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~G~~~l~~~~ 417 (456)
+++| ||+++|++++++|+|++.+||+|+ |+.+||+|||||+||||.|++
T Consensus 149 ~~~v--------NGe~~Q~g~t~dmi~~v~~LI~~l-S~~~tL~pGDvIlTGTp~g~~---------------------- 197 (500)
T PRK12764 149 RTWV--------NGELVQDDTTEDLLFPFAQLVADL-SQLLTLEEGDVILTGTPAGSS---------------------- 197 (500)
T ss_pred EEEE--------CCEEEEeccHHHhcCCHHHHHHHH-hcCCCcCCCCEEEeCCCCCCe----------------------
Confidence 8888 999999999999999999999998 899999999999999998753
Q ss_pred CCCCCCCCCCEEEEEEEEeC--CCceeeeeceeeEEeeC
Q 012786 418 FTRKFLEDGDEVTFTGFCKG--NGYTVGFGTCSGKIVPS 454 (456)
Q Consensus 418 ~~~~fL~~GD~V~~~~~~~~--~~~~~g~G~~~~~v~p~ 454 (456)
+|++||+|++++ ++ +|.. -||+|+|+|+..
T Consensus 198 ----~l~pGD~v~~~i--~gi~~~~~-~~G~L~n~v~~~ 229 (500)
T PRK12764 198 ----VAAPGDVVEVEV--DAPADGAP-STGRLVTRVVEG 229 (500)
T ss_pred ----ecCCCCEEEEEE--cCCccCCC-CcceEEEEEEeC
Confidence 478899998884 41 2222 249999999743
No 11
>PF01557 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase family Mutations in Swiss:P16930 cause inherited tyrosinemia type I.; InterPro: IPR002529 Fumarylacetoacetase (3.7.1.2 from EC; also known as fumarylacetoacetate hydrolase or FAH) catalyses the hydrolytic cleavage of a carbon-carbon bond in fumarylacetoacetate to yield fumarate and acetoacetate as the final step in phenylalanine and tyrosine degradation []. This is an essential metabolic function in humans, the lack of FAH causing type I tyrosinaemia, which is associated with liver and kidney abnormalities and neurological disorders [, ]. The enzyme mechanism involves a catalytic metal ion, a Glu/His catalytic dyad, and a charged oxyanion hole []. FAH folds into two domains: an N-terminal domain SH3-like beta-barrel, and a C-terminal with an unusual fold consisting of three layers of beta-sheet structures []. This entry represents the C-terminal domain of fumarylacetoacetase, as well as other domains that share a homologous sequence, including: 5-carboxymethyl-2-hydroxymuconate delta-isomerase (CHM isomerase; 5.3.3.10 from EC), which catalyses the conversion of 5-carboxymethyl-2-hydroxymuconate to 5-carboxy-2-oxohept-3-enedioate []. 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (OPET decarboxylase; 4.1.1.68 from EC), which catalyses the conversion of 5-oxopent-3-ene-1,2,5-tricarboxylate to 2-oxohept-3-enedioate and carbon dioxide. Bifunctional enzyme HpcE (OPET decarboxylase 4.1.1.68 from EC/HHDD isomerase 5.3.3.10 from EC), which is a duplication consisting of a tandem repeat of two FAH C-terminal-like domains. This enzyme is responsible for the degradation of 4-hydroxyphenylacetate, a product of tyrosine and phenylalanine metabolism also released by lignin catabolism []. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1SAW_B 3LZK_B 3S52_B 2WQT_Q 1SV6_C 2DFU_B 1WZO_D 3QDF_A 1GTT_B 1I7O_C ....
Probab=100.00 E-value=5.7e-40 Score=314.87 Aligned_cols=185 Identities=33% Similarity=0.438 Sum_probs=163.1
Q ss_pred CccEEEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCC-CHhHHhhhheeEEEee
Q 012786 194 HLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPI-DVNEAADHIFGVMLMN 272 (456)
Q Consensus 194 ~~P~~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~v-s~eeA~~~I~Gytl~N 272 (456)
..|++|.|+++++.++|++|.+|.. +..+|||+|||++|||+ ++++ ++++|++||+||+++|
T Consensus 30 ~~p~~~~~~~~~~~~~g~~i~~p~~--------------~~~~~~E~Ela~vig~~---~~~~~~~~ea~~~i~g~~~~~ 92 (218)
T PF01557_consen 30 VEPVFFMKPPSSLVGSGAPIPLPRG--------------SRRLDYEAELAFVIGRP---LRNVYTPEEALDAIAGYTPAN 92 (218)
T ss_dssp CSGEEEEEEGGGEEETTSEEEECTT--------------SSSEEEEEEEEEEESS----BSSTH-HHHHGGGEEEEEEEE
T ss_pred cCCeEEecCCceeecCCCceecCcc--------------ccccCcceEEEEEEecC---CCCCCCHHHHHHHhhEEeeec
Confidence 6799999999999999999999986 68999999999999998 8888 9999999999999999
Q ss_pred ccchhhHhhhhhcCCCCccccccCCC--CCCccccccccCCccCCCCCCCCCCCccccccCCCceeEEEEEEEeeCCCCC
Q 012786 273 DWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKED 350 (456)
Q Consensus 273 D~SaRdiQ~~e~~~lg~~~~Ksfdts--lGPwiVt~del~~~~~~~~~~d~~~~~~l~~~~~~~l~i~l~V~~~~~~~~N 350 (456)
|||+|++|.+.+.+++|+.+|+|+++ +|||+++++++.++ .++++++++ |
T Consensus 93 d~~~r~~~~~~~~~~~~~~~k~~~~~~~~Gp~~v~~~~~~~~--------------------~~~~~~l~v--------n 144 (218)
T PF01557_consen 93 DVTARDLQWRERPGLPWIADKSFDGSLVLGPWVVPPDELPDL--------------------RDLRLRLRV--------N 144 (218)
T ss_dssp EEEEHHHHHHHHHTHSSHHHHSSTTCEEEEEEEEEHSSHSGT--------------------TSEEEEEEE--------T
T ss_pred ccchhhhhhhhhcccchhhccCcCcceeecccccccccccCc--------------------ceEEEEEEE--------C
Confidence 99999999888755788999999985 99999999998752 568888888 9
Q ss_pred CeEEEecccccccCCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCcEEEEEecCccceecCCCCCCCCCCCCEEE
Q 012786 351 SCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVT 430 (456)
Q Consensus 351 Ge~~q~~~t~~m~~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~G~~~l~~~~~~~~fL~~GD~V~ 430 (456)
|+++|++++++|+|++.++|+|+ |+.++|+|||+|+|||++|++. ..+..+|++||+|+
T Consensus 145 G~~~~~~~~~~~~~~~~~ll~~l-s~~~~L~aGdvI~TGt~~G~~~--------------------~~~~~~l~~Gd~v~ 203 (218)
T PF01557_consen 145 GEVVQSGSTSDMLGDPAELLAWL-SRGLTLRAGDVILTGTPTGVGA--------------------RPPPVPLQPGDRVE 203 (218)
T ss_dssp TEEEEEEEGGGBSSSHHHHHHHH-HTTS-B-TTEEEEEEESSTSEG--------------------SSCCEEEBTT-EEE
T ss_pred CEEEEeccchhHHhhHHHHHHHH-hCCCCCCcceEEEcCCcCCCCc--------------------ccccccCCCCcEEE
Confidence 99999999999999999999997 8999999999999999998632 12578999999999
Q ss_pred EEEEE-eCCCceeeeeceeeEEe
Q 012786 431 FTGFC-KGNGYTVGFGTCSGKIV 452 (456)
Q Consensus 431 ~~~~~-~~~~~~~g~G~~~~~v~ 452 (456)
++ + + |||+++|+|+
T Consensus 204 ~~--~~~------glG~l~~~v~ 218 (218)
T PF01557_consen 204 AE--IDE------GLGSLENTVA 218 (218)
T ss_dssp EE--EET------TTEEEEEEEE
T ss_pred EE--EEC------CEeEEEEEEC
Confidence 88 5 5 9999999985
No 12
>TIGR02305 HpaG-N-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit. This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related C-terminal domain (TIGR02303). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
Probab=100.00 E-value=3.1e-38 Score=301.32 Aligned_cols=173 Identities=23% Similarity=0.257 Sum_probs=154.4
Q ss_pred CccEEEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCCCHhHHhhhheeEEEeec
Q 012786 194 HLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMND 273 (456)
Q Consensus 194 ~~P~~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~vs~eeA~~~I~Gytl~ND 273 (456)
+.|++|.|++++++++|++|.+|.. +..++||+|||+||||+ ++++++++|++||+||+++||
T Consensus 31 ~~P~~f~k~~~~~~~~g~~i~~p~~--------------~~~~~~E~ELa~vigr~---~~~~~~~~a~~~v~g~~~~~d 93 (205)
T TIGR02305 31 KTPVLYIKPRNTHNGCGQPIPLPAG--------------VEKLRSGATLALVVGRT---ACRVREEEALDYVAGYALVND 93 (205)
T ss_pred CCCEEEEcCcceEeCCCCeEECCCC--------------CCCccEEEEEEEEECCC---CCCCCHHHHHHhhheeEEeee
Confidence 8999999999999999999999875 57899999999999999 788999999999999999999
Q ss_pred cchhhHhhhhhcCCCCccccccCCC--CCCccccccccCCccCCCCCCCCCCCccccccCCCceeEEEEEEEeeCCCCCC
Q 012786 274 WSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDS 351 (456)
Q Consensus 274 ~SaRdiQ~~e~~~lg~~~~Ksfdts--lGPwiVt~del~~~~~~~~~~d~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NG 351 (456)
+|+|+.|.+. .|.++|+|+++ +||| ++.+++.+ +.++.+++++ ||
T Consensus 94 it~~~~~~~~----~~~~~k~~dg~~~lGp~-v~~~~~~d--------------------~~~~~~~l~v--------ng 140 (205)
T TIGR02305 94 VSLPEDSYYR----PAIKAKCRDGFCPIGPE-VPLSAIGN--------------------PDELTIYTYI--------NG 140 (205)
T ss_pred eehhhhhccC----cchhhcccCCccccCCc-ccHHHcCC--------------------ccccEEEEEE--------CC
Confidence 9999976532 47899999995 9999 77777643 2567888888 99
Q ss_pred eEEEecccccccCCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCcEEEEEecCccceecCCCCCCCCCCCCEEEE
Q 012786 352 CVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTF 431 (456)
Q Consensus 352 e~~q~~~t~~m~~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~G~~~l~~~~~~~~fL~~GD~V~~ 431 (456)
+++|++++++|+|++.++|+|+ |++++|+|||||+||||.|+ .+|++||+|++
T Consensus 141 ~~~~~g~~~~~~~~~~~li~~l-s~~~~L~aGdvI~TGT~~g~--------------------------~~l~~Gd~v~~ 193 (205)
T TIGR02305 141 KPAQSNNTSNLVRSAAQLISEL-SEFMTLNPGDVLLLGTPEAR--------------------------VEVGPGDRVRV 193 (205)
T ss_pred EEEEeeCHHHhCcCHHHHHHHH-hCCCCcCCCCEEEeCCCCCC--------------------------eecCCCCEEEE
Confidence 9999999999999999999998 78999999999999999874 35799999988
Q ss_pred EEEEeCCCceeeeeceeeEE
Q 012786 432 TGFCKGNGYTVGFGTCSGKI 451 (456)
Q Consensus 432 ~~~~~~~~~~~g~G~~~~~v 451 (456)
++ + |+|+++|+|
T Consensus 194 ~i--~------glG~l~n~v 205 (205)
T TIGR02305 194 EA--E------GLGELENPV 205 (205)
T ss_pred EE--c------CceeEEEeC
Confidence 84 5 899999986
No 13
>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase. Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.
Probab=99.87 E-value=1.6e-21 Score=192.29 Aligned_cols=172 Identities=16% Similarity=0.078 Sum_probs=122.8
Q ss_pred CccEEEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCCCHhHHh---hhheeEEE
Q 012786 194 HLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA---DHIFGVML 270 (456)
Q Consensus 194 ~~P~~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~vs~eeA~---~~I~Gytl 270 (456)
..|++=.-..+.+..+|.+|.++.. ..+++|+||||+|||+++ +++++.+|++ ++|+++.-
T Consensus 71 ~~P~~g~l~~~~~~~~g~~i~~~~~---------------~~~~vE~Elafvlg~~l~-~~~~t~~ev~~ai~~v~~~~E 134 (255)
T TIGR03220 71 YQPDFGYLLDGMVYNEGEPIPTDTL---------------IQPKAEGEIAFVLKKDLM-GPGVTAADVLAATECVMPCFE 134 (255)
T ss_pred CCCcEEEeeccccccCCCeeccccC---------------ccceeeeEEEEEECCCCC-CCCCCHHHHHHHHhheeeeEE
Confidence 3465444455666778888887753 479999999999999976 6789999766 66777788
Q ss_pred eeccchhhHhhhhhcCCCCccccccCCCCCCccccccccCCccCCCCCCCCCCCccccccCCCceeEEEEEEEeeCCCCC
Q 012786 271 MNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKED 350 (456)
Q Consensus 271 ~ND~SaRdiQ~~e~~~lg~~~~KsfdtslGPwiVt~del~~~~~~~~~~d~~~~~~l~~~~~~~l~i~l~V~~~~~~~~N 350 (456)
+||.+.||+|.. ..+..+|+. +-|. +|+.+++.+.. +-+...+.+++++ |
T Consensus 135 l~D~r~~~~~~~----~~~~~Ad~~--~~~~-~V~g~~~~~~~---------------~~~l~~~~~~l~v--------n 184 (255)
T TIGR03220 135 IVDSRIRDWKIK----IQDTVADNA--SCGV-FVLGDTRVDPR---------------KLDLALCGMVLEK--------N 184 (255)
T ss_pred EcccccccCCCC----ccceeeecC--Ccce-EEECCCcCCcc---------------ccChhhCceEEEE--------C
Confidence 889999998742 245677763 2233 33333332210 0012445567777 9
Q ss_pred CeEEEecccccccCCHHHHHHHHHHc-----CcccCCCCEEEcCCCCCCcCCCCCcEEEEEecCccc
Q 012786 351 SCVVTRSNFKYLYWTLTQQLAHHTIN-----GCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKP 412 (456)
Q Consensus 351 Ge~~q~~~t~~m~~s~~qlIa~l~S~-----~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~G~~~ 412 (456)
|+++|++++++|++++.++|+|+ ++ +++|+|||+|+|||++|+.++++||.++++++|++.
T Consensus 185 G~~~~~g~~~~~lg~p~~~l~~L-~~~l~~~g~~L~aGdiV~TGt~~g~~~v~~Gd~v~~~~~glG~ 250 (255)
T TIGR03220 185 GEIVSTGAGAAALGSPVNAVAWL-ANTLGRLGIPLKAGEVILSGSLAALVPVKAGDNLRVSIGGIGS 250 (255)
T ss_pred CEEEeecchhhccCCHHHHHHHH-HHHHHHcCCCCCCCCEEECCCCCCCeeCCCCCEEEEEEcCCce
Confidence 99999999999999999999998 55 889999999999999987655455544444444443
No 14
>PF09298 FAA_hydrolase_N: Fumarylacetoacetase N-terminal; InterPro: IPR015377 Fumarylacetoacetase (3.7.1.2 from EC; also known as fumarylacetoacetate hydrolase or FAH) catalyses the hydrolytic cleavage of a carbon-carbon bond in fumarylacetoacetate to yield fumarate and acetoacetate as the final step in phenylalanine and tyrosine degradation []. This is an essential metabolic function in humans, the lack of FAH causing type I tyrosinaemia, which is associated with liver and kidney abnormalities and neurological disorders [, ]. The enzyme mechanism involves a catalytic metal ion, a Glu/His catalytic dyad, and a charged oxyanion hole []. FAH folds into two domains: an N-terminal domain SH3-like beta-barrel, and a C-terminal with an unusual fold consisting of three layers of beta-sheet structures []. This entry represents the N-terminal domain of fumarylacetoacetase.; GO: 0004334 fumarylacetoacetase activity, 0009072 aromatic amino acid family metabolic process; PDB: 1QCN_B 1QCO_B 2HZY_A 1QQJ_B 1HYO_A.
Probab=99.81 E-value=1.7e-20 Score=162.12 Aligned_cols=105 Identities=50% Similarity=0.870 Sum_probs=83.0
Q ss_pred CCCCcEEEecCCCCCCceEEEECCeEEechhhhhcCCCCCCC--ccCCCccCcccHHHHHhcCchhHHHHHHHHHHHHhc
Q 012786 18 QNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPI--LKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSS 95 (456)
Q Consensus 18 ~n~p~g~fs~~~~~~~r~Gv~~gd~vvDL~~~~~~~~~~~~~--~~~~~~~~~~~l~~fl~~g~~~~~~~r~~l~~~~~~ 95 (456)
||||||+||+..++.+|+||+|||+||||+++...|++++.. .....+|.+++||.|+++|+++|.++|..|++++.+
T Consensus 1 qNLPfGVFst~~~~~pR~gvaIGd~VlDL~al~~~g~~~~~~~~~~~~~~f~~~tLN~fmalg~~~w~avR~~L~~lL~~ 80 (107)
T PF09298_consen 1 QNLPFGVFSTPDDPSPRVGVAIGDQVLDLSALAAAGLFDGPSLSPAAASAFAQPTLNDFMALGRPAWRAVRARLQELLSA 80 (107)
T ss_dssp TT--EEEEEESSEESEEEEEEETTEEEEHHHH--GGG--STTTTTG-GGGGGSSSSHHHHHC-HHHHHHHHHHHHHHHBT
T ss_pred CCCCcEEEecCCCCCCeeEEEECCEEEehHHHhhhcccCcccchhhhHhHhcCCCHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 799999999878889999999999999999998888776521 245789999999999999999999999999999985
Q ss_pred CchhhccchhcccccccccCCcEEeCC
Q 012786 96 NEATLRDNANLRQKSLVPMGKVEMLLP 122 (456)
Q Consensus 96 ~~~~~~~~~~~~~~~~~pl~~v~l~~P 122 (456)
....+.++....+..++|+++|+||+|
T Consensus 81 ~~~~~~~~~~~~~~~L~~~~~v~mhLP 107 (107)
T PF09298_consen 81 DNSELSDNQALVEPALVPQAEVTMHLP 107 (107)
T ss_dssp TSCHHHT-HHHHHHHEEEGGGEEEE-S
T ss_pred cCccccchHHHHHHhcccHHHhhcCCC
Confidence 555455555666889999999999998
No 15
>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional
Probab=99.81 E-value=3.2e-19 Score=176.56 Aligned_cols=170 Identities=16% Similarity=0.123 Sum_probs=131.5
Q ss_pred CceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCCCHhHHhhhheeEEEeeccchhhHhhhh
Q 012786 204 SSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWE 283 (456)
Q Consensus 204 ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~vs~eeA~~~I~Gytl~ND~SaRdiQ~~e 283 (456)
+.+..+|..+..+. .....+|+||||++|++++ +..++.+|+.++|.++..+.++..++++.|.
T Consensus 85 ~~~~~~g~~~~~~~---------------~~~~~iE~Eiaf~l~~dl~-~~~~t~~ev~~ai~~v~paiEivdsr~~~~~ 148 (262)
T PRK11342 85 DMCYGDNEIIPFSR---------------VLQPRIEAEIALVLNRDLP-ATDITFDELYNAIEWVLPALEVVGSRIRDWS 148 (262)
T ss_pred hhhcCCCCeecccc---------------cCCcceeeEEEEEECCCCC-CCCCCHHHHHHhhceEeeeEEecCCcccCCC
Confidence 45666777765543 2457889999999999986 5678999999999999999999999998774
Q ss_pred hcCCCCccccccCCC---CCCccccccccCCccCCCCCCCCCCCccccccCCCceeEEEEEEEeeCCCCCCeEEEecccc
Q 012786 284 YVPLGPFLGKSFGTT---LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFK 360 (456)
Q Consensus 284 ~~~lg~~~~Ksfdts---lGPwiVt~del~~~~~~~~~~d~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~ 360 (456)
. ......+.+..+. +|+.+...++++ ..++.+++++ ||+++|+++++
T Consensus 149 ~-~~~~~iAD~~~~~~~VlG~~~~~~~~~d---------------------~~~~~~~l~v--------ng~~~q~g~~~ 198 (262)
T PRK11342 149 I-QFVDTVADNASCGVYVIGGPAQRPAGLD---------------------LKNCAMKMTR--------NNEEVSSGRGS 198 (262)
T ss_pred C-chhheeecccccceEEECCCcCCcccCC---------------------hhhCEEEEEE--------CCEEEEEEcHH
Confidence 3 1222344444332 677665544432 2567888888 99999999999
Q ss_pred cccCCHHHHHHHHH----HcCcccCCCCEEEcCCCCCCcCCCCCcEEEEEecCccceecCCCCCCCCCCCCEEEEEEEEe
Q 012786 361 YLYWTLTQQLAHHT----INGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCK 436 (456)
Q Consensus 361 ~m~~s~~qlIa~l~----S~~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~G~~~l~~~~~~~~fL~~GD~V~~~~~~~ 436 (456)
+|+|++.++|+|++ +++++|+|||||+||||.|+ .++++||+|++++ +
T Consensus 199 ~~lg~p~~~l~~L~~~l~~~g~~L~aGdvV~TGt~~~~--------------------------~~l~~Gd~v~~~i--~ 250 (262)
T PRK11342 199 ECLGHPLNAAVWLARKMASLGEPLRAGDIILTGALGPM--------------------------VAVNAGDRFEAHI--E 250 (262)
T ss_pred HhccCHHHHHHHHHHHHHHcCCCcCCCCEEEcCCCCCC--------------------------eeCCCCCEEEEEE--C
Confidence 99999999999872 45579999999999999764 4678888888874 5
Q ss_pred CCCceeeeeceeeEEee
Q 012786 437 GNGYTVGFGTCSGKIVP 453 (456)
Q Consensus 437 ~~~~~~g~G~~~~~v~p 453 (456)
|+|++++++.-
T Consensus 251 ------glG~v~~~~~~ 261 (262)
T PRK11342 251 ------GIGSVAATFSS 261 (262)
T ss_pred ------CCceEEEEEec
Confidence 88998888753
No 16
>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. This model represents the enzyme which hydrates the double bond of 2-oxo-hepta-3-ene-1,7-dioic acid to form 4-hydroxy-2-oxo-heptane-1,7-dioic acid in the catabolism of 4-hydroxyphenylacetic acid. The gene for this enzyme is generally found adjacent to other genes of this pathway in an apparent operon.
Probab=99.69 E-value=4.4e-16 Score=154.68 Aligned_cols=174 Identities=15% Similarity=0.060 Sum_probs=127.5
Q ss_pred CccEEEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCCCHhHHhhhheeEEEeec
Q 012786 194 HLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMND 273 (456)
Q Consensus 194 ~~P~~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~vs~eeA~~~I~Gytl~ND 273 (456)
..|++=.-..+.+..+|..|.... ..+.-+|+||||++|++++ +...+.+|++++|.++..+.|
T Consensus 76 ~~P~~g~l~~~~~~~~g~~~~~~~---------------~~~p~vE~Eiaf~l~~~l~-~~~~t~~ev~~ai~~v~paiE 139 (267)
T TIGR02312 76 DEPDYGVLLDDMFFEDGSTIPADR---------------FIQPRVEVELAFVLKKDLE-GPNVTIFDVLNATDYVVPALE 139 (267)
T ss_pred CCCeeEEecCccccCCCCeecccc---------------ccccccceEEEEEECCCCC-CCCCCHHHHHHHhheEEeeEE
Confidence 456654555566677777665532 2357899999999999976 578999999999999999999
Q ss_pred cchhhHhhhhhcC-----CCCccccccCC---CCCCccccccccCCccCCCCCCCCCCCccccccCCCceeEEEEEEEee
Q 012786 274 WSARDIQAWEYVP-----LGPFLGKSFGT---TLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKP 345 (456)
Q Consensus 274 ~SaRdiQ~~e~~~-----lg~~~~Ksfdt---slGPwiVt~del~~~~~~~~~~d~~~~~~l~~~~~~~l~i~l~V~~~~ 345 (456)
+..+.++.|.... +....+.+..+ .+|+.++.++.++ ..++.++|++
T Consensus 140 i~dsr~~~~~~~~~~~~~~~d~iADn~~~~~~v~G~~~~~~~~~d---------------------l~~~~~~l~~---- 194 (267)
T TIGR02312 140 IIDARIERVDPETGATRKVFDTISDNAANAGIVLGGRPVRPDALD---------------------LRWVGAILYR---- 194 (267)
T ss_pred EeeccccccccccCCccccccEecCCccceEEEECCCCCCccccC---------------------hhhcccEEEE----
Confidence 9999999875321 11122332222 1677665544432 2456677777
Q ss_pred CCCCCCeEEEecccccccCCHHHHHHHH----HHcCcccCCCCEEEcCCCCCCcCCCCCcEEEEEecCccc
Q 012786 346 AGKEDSCVVTRSNFKYLYWTLTQQLAHH----TINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKP 412 (456)
Q Consensus 346 ~~~~NGe~~q~~~t~~m~~s~~qlIa~l----~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~G~~~ 412 (456)
||+++++|++++|+.++.+.++|+ ..++.+|++||+|+|||+.++.++++|+.++++++|.+.
T Consensus 195 ----nG~~~~~g~~~~~lg~P~~al~wL~~~l~~~G~~L~aGdiV~TGs~~~~~~v~~G~~~~~~~~glG~ 261 (267)
T TIGR02312 195 ----NGVVEETGLAAGVLNHPANGVAWLANKLAPWGETLEAGQVVLAGSFTRPVAARSGDTFHADYGPLGT 261 (267)
T ss_pred ----CCEEEEEechhhhcCCHHHHHHHHHHHHHHcCCCCCCCCEEECCCCCCceecCCCCEEEEEEcCCce
Confidence 999999999999999999999998 356679999999999999987666666655555555443
No 17
>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase. Members of this protein family are 4-oxalocrotonate decarboxylase. Note that this protein, as characterized (indirectly) in Pseudomonas sp. strain CF600, was inactive except when coexpressed with DmpE, 2-oxopent-4-enoate hydratase, a homologous protein from the same operon. Both of these enzymes are active in the degradation of catechol, a common intermediate in the degradation of aromatic compounds such as benzoate, toluene, phenol, dimethylphenol (dmp), salicylate, etc.
Probab=99.43 E-value=3.3e-12 Score=126.84 Aligned_cols=173 Identities=13% Similarity=0.129 Sum_probs=126.0
Q ss_pred ccEEEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCCCHhHHhhhheeEEEeecc
Q 012786 195 LPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDW 274 (456)
Q Consensus 195 ~P~~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~vs~eeA~~~I~Gytl~ND~ 274 (456)
.|++=.-..+.+..+|..+..-. ..+.-.|+|+||++|++++ +...+.+++.++|..+..+.++
T Consensus 80 ~P~~g~l~~~~~~~~g~~~~~~~---------------~~~p~vE~Eiaf~l~~~l~-~~~~t~~ev~~ai~~v~paiEi 143 (263)
T TIGR03218 80 TPVFGFLVDYFSVPDGGEIKTSE---------------LIHPKVEAEIAFVTKAPLK-GPGCHIGDVLAATDFVMPAVEV 143 (263)
T ss_pred CCeeeeecccccccCCCeecccc---------------cCcceeeeEEEEEECCCCC-CCCCCHHHHHHhhcEEEeeEEe
Confidence 45543334455555666664432 2356899999999999986 6889999999999999999999
Q ss_pred chhhHhhhhhcCCCCccccccCC---CCCCccccccccCCccCCCCCCCCCCCccccccCCCceeEEEEEEEeeCCCCCC
Q 012786 275 SARDIQAWEYVPLGPFLGKSFGT---TLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDS 351 (456)
Q Consensus 275 SaRdiQ~~e~~~lg~~~~Ksfdt---slGPwiVt~del~~~~~~~~~~d~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NG 351 (456)
-...+..|.. .+....+.+..+ -+||+....+.++ ..++.+++++ ||
T Consensus 144 vdsR~~~~~~-~~~~~iADn~~~~~~vlG~~~~~~~~~d---------------------l~~~~~~l~~--------~g 193 (263)
T TIGR03218 144 IDSRYRDFKF-DLKSVIADNTSSARFVTGGRAANVEDLD---------------------LRTLGVVMEK--------NG 193 (263)
T ss_pred ccCcccCCCC-ChhheeeeccccceEEECCCCCCccccC---------------------HhhCcEEEEE--------CC
Confidence 8888876642 223355665544 2788776544332 2556777777 99
Q ss_pred eEEEecccccccCCHHHHHHHH----HHcCcccCCCCEEEcCCCCCCcCCCCCcEEEEEecCccce
Q 012786 352 CVVTRSNFKYLYWTLTQQLAHH----TINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPL 413 (456)
Q Consensus 352 e~~q~~~t~~m~~s~~qlIa~l----~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~G~~~l 413 (456)
++++++..++..-++...+.|+ ..++.+|++||+|+|||..++-++.+|+.+.+.++|.+.+
T Consensus 194 ~~v~~g~g~~~lG~P~~al~wL~~~l~~~G~~L~aG~iV~tGs~t~~~~v~~G~~~~~~~~glG~v 259 (263)
T TIGR03218 194 EVVAMGAGAAVLGHPAAAVAMLANHLAERGEEIPAGSFIMSGGITEAVAVAPGDSVTVRYQGLGSV 259 (263)
T ss_pred EEEEeecccccCCCHHHHHHHHHHHHHHcCCCCCCCCEEECCcCcCceecCCCCEEEEEECCCceE
Confidence 9999999999988888888887 5788899999999999999876666666655555555543
No 18
>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]
Probab=99.33 E-value=1.1e-11 Score=122.78 Aligned_cols=186 Identities=22% Similarity=0.164 Sum_probs=131.9
Q ss_pred cEEEeCC-CCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCCCHhHHhhhheeEEEeecc
Q 012786 196 PIAYHGR-ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDW 274 (456)
Q Consensus 196 P~~f~k~-~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~vs~eeA~~~I~Gytl~ND~ 274 (456)
|-+|.|. +.+-+|+|+.|-.-.. |++-.-|.|+++++... |+ |.|||++||+
T Consensus 169 aEIFtKaqpmssVG~Ga~Igv~~~--------------S~WnnPEPEvvl~~dS~---G~----------I~GaTlgnDV 221 (379)
T COG3970 169 AEIFTKAQPMSSVGHGAQIGVRPD--------------SEWNNPEPEVVLAVDSS---GK----------IVGATLGNDV 221 (379)
T ss_pred hhheecCCccccccccceeeeccc--------------cccCCCCCeEEEEEcCC---Cc----------EEeeeecCcc
Confidence 5556664 6777999999954332 78899999999999876 74 9999999999
Q ss_pred chhhHhhhhhcCCCCccccccCC--CCCCccccccccCCccCCCCCCCCCCCccccccCCCceeEEEEEEEeeCCCCCCe
Q 012786 275 SARDIQAWEYVPLGPFLGKSFGT--TLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSC 352 (456)
Q Consensus 275 SaRdiQ~~e~~~lg~~~~Ksfdt--slGPwiVt~del~~~~~~~~~~d~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe 352 (456)
++||+..+.- |--.++|.... ++||+|++-|+.-... +...-.|+|.| .|++ +=.
T Consensus 222 nlRD~Egrsa--LlL~kaKdnnasCaiGPfIrlfDe~f~~~-----------------dv~~a~vtLkv--~ged--gf~ 278 (379)
T COG3970 222 NLRDFEGRSA--LLLSKAKDNNASCAIGPFIRLFDETFTID-----------------DVKSAEVTLKV--TGED--GFF 278 (379)
T ss_pred cccccccccc--hhcccccccCccccccceEEeecCCCChh-----------------hhhhceEEEEE--EccC--ceE
Confidence 9999987643 22246666555 4999999988753210 01334477776 3332 223
Q ss_pred EEEecccccccCCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCcEEEEEecCccceecCCCCCCCCCCCCEEEEE
Q 012786 353 VVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFT 432 (456)
Q Consensus 353 ~~q~~~t~~m~~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~G~~~l~~~~~~~~fL~~GD~V~~~ 432 (456)
.-..+|++.|-.++.+++....-+.....-|-++++||.--++.-+.+- | ....-+.||.|+++
T Consensus 279 l~G~snm~~isR~p~~l~~Q~l~~~hqyPDG~~lflGTmfaP~kDr~~~-------g---------~gfth~~gD~VeIS 342 (379)
T COG3970 279 LEGSSNMAEISRSPEELVIQALNRDHQYPDGFALFLGTMFAPGKDRGLK-------G---------LGFTHEVGDIVEIS 342 (379)
T ss_pred EeccccHHhhccCHHHHHHHHhccCCCCCCceeEEeeeeeccccccCCC-------C---------CCcccCCCCEEEEe
Confidence 3456678999998988877666788899999999999985544321000 0 13446889999988
Q ss_pred EEEeCCCceeeeeceeeEEeeCC
Q 012786 433 GFCKGNGYTVGFGTCSGKIVPST 455 (456)
Q Consensus 433 ~~~~~~~~~~g~G~~~~~v~p~~ 455 (456)
. . -||++.|.|.-+.
T Consensus 343 t--p------~lG~Lin~V~~~d 357 (379)
T COG3970 343 T--P------KLGTLINPVTTSD 357 (379)
T ss_pred c--c------ccceeeeeeeccC
Confidence 3 4 7999999997553
No 19
>COG3971 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.27 E-value=2.1e-11 Score=119.05 Aligned_cols=167 Identities=19% Similarity=0.206 Sum_probs=129.1
Q ss_pred CCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCCCHhHHhhhheeEEEeeccchhhHh-h
Q 012786 203 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQ-A 281 (456)
Q Consensus 203 ~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~vs~eeA~~~I~Gytl~ND~SaRdiQ-~ 281 (456)
.+.....|.+|..+.. -...+|+||+++++|+++ |.++|..|+++||.-+..+..+-.-.++ .
T Consensus 85 d~m~f~eg~~ip~~r~---------------~~prvE~EiafvL~kdlp-a~~~T~~d~l~a~~~v~palElidsri~~d 148 (264)
T COG3971 85 DDMAFNEGADIPFSRF---------------IQPRVEVEIAFVLKKDLP-APDCTVADVLNATDYVLPALELIDSRIKQD 148 (264)
T ss_pred HhHHhhcCCCCCcccc---------------cceeeeeeEEEEecCCCC-CCCCCHHHHHHHHHhhhhhhhhccchhhhC
Confidence 4445666666655543 234899999999999998 8899999999999999999998665555 4
Q ss_pred hhhcCCCCccccccCCC---CCCccccccccCCccCCCCCCCCCCCccccccCCCceeEEEEEEEeeCCCCCCeEEEecc
Q 012786 282 WEYVPLGPFLGKSFGTT---LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSN 358 (456)
Q Consensus 282 ~e~~~lg~~~~Ksfdts---lGPwiVt~del~~~~~~~~~~d~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~ 358 (456)
|.. ++..+.+.|.... |||-.+.+++++- ......+.. ||+.++.+.
T Consensus 149 ~~~-~~~dtiaDnaan~G~ViG~~~~~~~~ld~---------------------~~~~~~l~r--------ng~~~e~g~ 198 (264)
T COG3971 149 WQV-KFPDTIADNAANAGFVIGGRAVKPDDLDL---------------------RNVGATLYR--------NGVEEETGV 198 (264)
T ss_pred CCC-CcceEEecccccCceEECCCCCCchhhhh---------------------hhccceeee--------cCEEEEeee
Confidence 432 2334566665442 9987777766642 345666776 999999999
Q ss_pred cccccCCHHHHHHHHH----HcCcccCCCCEEEcCCCCCCcCCCCCcEEEEEecCccceec
Q 012786 359 FKYLYWTLTQQLAHHT----INGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL 415 (456)
Q Consensus 359 t~~m~~s~~qlIa~l~----S~~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~G~~~l~~ 415 (456)
.+..+-++..-++|++ +.+.+|++||||+||.-.+.-+..+||.+++.++|.+.+++
T Consensus 199 ~aavLghP~~a~~wLAn~~a~~G~~Lk~G~IVl~Gs~t~~v~~~~gd~~h~~~~~lG~v~~ 259 (264)
T COG3971 199 GAAVLGHPAAALAWLANKLAAYGVPLKAGDIVLTGSFTGPVPARPGDTFHADFGGLGAVSC 259 (264)
T ss_pred chhhcCCcHHHHHHHHHHHHHcCCCcccCcEEecCccCccccCCCCCEEEEEecCcCceEE
Confidence 9999999999999974 78999999999999999988777777777777777766553
No 20
>PF11010 DUF2848: Protein of unknown function (DUF2848); InterPro: IPR021269 This bacterial family of proteins has no known function.
Probab=97.80 E-value=0.00028 Score=67.11 Aligned_cols=167 Identities=13% Similarity=0.082 Sum_probs=115.7
Q ss_pred hhhhhhh---ccccCCCCCCccEEEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCC
Q 012786 178 SIFHLQV---YRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGK 254 (456)
Q Consensus 178 ~~~~~~~---~~~~p~~~~~~P~~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~ 254 (456)
..|++|| +=+.| ...|.+|--.++-+.-. ..|.... ..--=|+|..+|..+ |+
T Consensus 12 ~~HI~EL~~lGVp~P---s~vP~~Y~v~~~lltq~-~~i~v~g----------------~~tSGE~E~vli~~~----g~ 67 (194)
T PF11010_consen 12 EHHIEELAALGVPPP---SSVPLFYRVAPYLLTQA-DEIEVLG----------------EDTSGEAEPVLIRHG----GE 67 (194)
T ss_pred HHHHHHHHHhCCCCC---CCCCEEEEechhhCccc-CeEEecc----------------CCCCceEEEEEEEEC----Ce
Confidence 3566554 33445 26788888777655443 3343322 233458998877764 32
Q ss_pred CCCHhHHhhhheeEEEeeccchhhHhhhhhcCCCCccccccCC-CCCCccccccccCCccCCCCCCCCCCCccccccCCC
Q 012786 255 PIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGT-TLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISK 333 (456)
Q Consensus 255 ~vs~eeA~~~I~Gytl~ND~SaRdiQ~~e~~~lg~~~~Ksfdt-slGPwiVt~del~~~~~~~~~~d~~~~~~l~~~~~~ 333 (456)
.-.+++-|=|.|++..... ..+|.... ++++-+-..+++.+.| +
T Consensus 68 -----------~~v~vgSDHTDR~lE~~sV-----a~SKq~c~Kpva~~~W~~~dV~dhW-------------------D 112 (194)
T PF11010_consen 68 -----------LYVGVGSDHTDRKLEAYSV-----AVSKQACPKPVAREAWRLDDVADHW-------------------D 112 (194)
T ss_pred -----------EEEEecCCCccchhhhcCc-----hhhhhcCCccchhhcCcHHHHHhhh-------------------h
Confidence 3578999999999986543 45777655 7888666666776643 5
Q ss_pred ceeEEEEEEEeeCCCCCCeEEEecccccccCCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCcEEEEEec
Q 012786 334 NYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWN 408 (456)
Q Consensus 334 ~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~ 408 (456)
.+.|+.++..+| .+.+.|+|.++.|. ++.++++-+.-....+.+|-++++||..-.|.+.+|+.+++++.
T Consensus 113 ~l~Lrsw~~~dg----~~~lYQeGtla~ll-~p~~ll~~~~~~~~~~~~g~~m~~GT~~~~g~~~~a~~f~~eL~ 182 (194)
T PF11010_consen 113 ELELRSWITEDG----ERVLYQEGTLAALL-PPADLLERLGEGRGDLPEGTAMFCGTVPAIGGIRPADRFEMELE 182 (194)
T ss_pred heeEEEEEeeCC----CEEEEeecchhhcC-CHHHHHHhhhccCCCCCCCEEEEEeccccccCccccceEEEEEE
Confidence 688888876543 45678999998875 78999999832567899999999999987777667776666543
No 21
>COG3802 GguC Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.56 E-value=0.00027 Score=69.47 Aligned_cols=142 Identities=23% Similarity=0.272 Sum_probs=93.2
Q ss_pred ccE-EEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEE--EEEcCCCCCCCCCCHhHHhhhheeEEEe
Q 012786 195 LPI-AYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMA--AVVGPGNELGKPIDVNEAADHIFGVMLM 271 (456)
Q Consensus 195 ~P~-~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELa--vVIGk~l~~g~~vs~eeA~~~I~Gytl~ 271 (456)
+|- +|.+.-+.++.+|.++..|.. .+.=--|.||+ .+||.+ |.. |-.||+++
T Consensus 140 QPEWFyKG~G~~~vapGa~l~sPaF--------------AedggEEpEiaGiYlig~d---g~p--------~RlGfal~ 194 (333)
T COG3802 140 QPEWFYKGDGTVAVAPGAPLPSPAF--------------AEDGGEEPEIAGIYLIGDD---GTP--------YRLGFALA 194 (333)
T ss_pred CcceEEeCCCcEEecCCCCCCChhh--------------hhccCCCceeeEEEEECCC---Cce--------eEEeeeec
Confidence 454 455566778889999988864 33344578886 577877 753 67899999
Q ss_pred eccchhhHhhhhhcCCCCccccccCCCCCCccccccccCCccCCCCCCCCCCCccccccCCCceeEEEEEEEeeCCCCCC
Q 012786 272 NDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDS 351 (456)
Q Consensus 272 ND~SaRdiQ~~e~~~lg~~~~KsfdtslGPwiVt~del~~~~~~~~~~d~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NG 351 (456)
|.+|.--.....| |--..+|=...++||-|..-+ ++. .++=.-++. ++|
T Consensus 195 NEfSDHvtEr~NY--L~LAHSKLR~as~GPEl~vG~-lP~----------------------~vrG~SRI~------Rdg 243 (333)
T COG3802 195 NEFSDHVTERVNY--LYLAHSKLRNASFGPELLVGA-LPE----------------------DVRGVSRIL------RDG 243 (333)
T ss_pred chhhhhhhhccce--EEeehhhhhccccCcceeecc-Cch----------------------hhcCceeee------cCC
Confidence 9999876554443 222477877778999887643 321 111122221 277
Q ss_pred eEEEecc----cccccCCHHHHHHHHHHcCcccCCCCE----EEcCCCC
Q 012786 352 CVVTRSN----FKYLYWTLTQQLAHHTINGCNLRSGDL----LGTGTIS 392 (456)
Q Consensus 352 e~~q~~~----t~~m~~s~~qlIa~l~S~~~tL~pGDv----I~TGTp~ 392 (456)
+++-+-. -++|-++++.+=-|+.-..+-.+|||| ++|+|.+
T Consensus 244 ~viwek~FlSGE~nMsHs~aNLEhhHFkY~lfrrpGDvHvh~FGtatlS 292 (333)
T COG3802 244 EVIWEKPFLSGEANMSHSIANLEHHHFKYALFRRPGDVHVHFFGTATLS 292 (333)
T ss_pred EEEEecccccCccchhhhhhhhhhhhhhhhhhcCCCceEEEEeccEEEe
Confidence 7754332 358999999987777666677899997 4556554
No 22
>PF10370 DUF2437: Domain of unknown function (DUF2437); InterPro: IPR018833 This entry represents the N-terminal 50 amino acids of a group of bacterial proteins often annotated as fumarylacetoacetate hydrolase-containing enzymes. In most cases these proteins also contain IPR002529 from INTERPRO, which is found towards the C terminus. ; PDB: 3RR6_A 2DFU_D 3QDF_A.
Probab=80.55 E-value=1.7 Score=32.56 Aligned_cols=26 Identities=27% Similarity=0.217 Sum_probs=19.9
Q ss_pred CCcEEEecCCCCCCceEEEECCeEEech
Q 012786 20 LPYGVFKPEPASVARPGVAIGEYVLDLS 47 (456)
Q Consensus 20 ~p~g~fs~~~~~~~r~Gv~~gd~vvDL~ 47 (456)
|.|+.|++. +..+.|++.||.|.-+.
T Consensus 1 Mr~~Rf~~~--g~~~~G~l~gd~v~~l~ 26 (50)
T PF10370_consen 1 MRIVRFSHG--GEIRYGVLEGDRVRVLD 26 (50)
T ss_dssp -EEEEEEET--TEEEEEEEETTCEEEEC
T ss_pred CeEEEEeeC--CCcEEEEEECCEEEEEE
Confidence 678899763 56899999999977553
No 23
>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional
Probab=61.50 E-value=12 Score=37.37 Aligned_cols=11 Identities=27% Similarity=0.295 Sum_probs=8.2
Q ss_pred CCCCCCCEEEE
Q 012786 421 KFLEDGDEVTF 431 (456)
Q Consensus 421 ~fL~~GD~V~~ 431 (456)
.-|++||+|..
T Consensus 220 ~~L~aGdvV~T 230 (262)
T PRK11342 220 EPLRAGDIILT 230 (262)
T ss_pred CCcCCCCEEEc
Confidence 46888888853
No 24
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=55.90 E-value=50 Score=25.47 Aligned_cols=19 Identities=21% Similarity=0.120 Sum_probs=14.7
Q ss_pred CCeEEEecccccccCCHHHHHHHH
Q 012786 350 DSCVVTRSNFKYLYWTLTQQLAHH 373 (456)
Q Consensus 350 NGe~~q~~~t~~m~~s~~qlIa~l 373 (456)
||+.++-. .+ ++.++++++
T Consensus 6 Ng~~~~~~---~~--tl~~Ll~~l 24 (65)
T PRK06488 6 NGETLQTE---AT--TLALLLAEL 24 (65)
T ss_pred CCeEEEcC---cC--cHHHHHHHc
Confidence 99988862 22 899999886
No 25
>cd05790 S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=44.47 E-value=53 Score=27.51 Aligned_cols=15 Identities=33% Similarity=0.173 Sum_probs=12.2
Q ss_pred CCCCCCCCCEEEEEE
Q 012786 419 TRKFLEDGDEVTFTG 433 (456)
Q Consensus 419 ~~~fL~~GD~V~~~~ 433 (456)
.+.+|+.||.|-.++
T Consensus 46 ~rp~L~~GDlV~ArV 60 (86)
T cd05790 46 NRPNLNVGDLVYARV 60 (86)
T ss_pred ccccCCCCCEEEEEE
Confidence 478899999987774
No 26
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=43.16 E-value=44 Score=26.71 Aligned_cols=60 Identities=23% Similarity=0.229 Sum_probs=38.2
Q ss_pred cCCCCEEEcCCCCCCcCCCCCcEEEEEecCccceec--CCCCCCCCCCCCEEEEEE-EEeCCCcee
Q 012786 380 LRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL--DGFTRKFLEDGDEVTFTG-FCKGNGYTV 442 (456)
Q Consensus 380 L~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~G~~~l~~--~~~~~~fL~~GD~V~~~~-~~~~~~~~~ 442 (456)
|..|++ .+|+...+.. .|..+++.++|...+-. +-.....++.||+|.+.+ .++.++.++
T Consensus 2 l~~G~~-v~g~V~si~d--~G~~v~~g~~gv~Gfl~~~~~~~~~~~~~Gq~v~~~V~~vd~~~~~v 64 (74)
T cd05694 2 LVEGMV-LSGCVSSVED--HGYILDIGIPGTTGFLPKKDAGNFSKLKVGQLLLCVVEKVKDDGRVV 64 (74)
T ss_pred CCCCCE-EEEEEEEEeC--CEEEEEeCCCCcEEEEEHHHCCcccccCCCCEEEEEEEEEECCCCEE
Confidence 567766 6888876654 68888886666433322 111126799999999986 234555554
No 27
>smart00652 eIF1a eukaryotic translation initiation factor 1A.
Probab=37.86 E-value=50 Score=27.44 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=14.2
Q ss_pred CCCCCCCCCEEEEEEE
Q 012786 419 TRKFLEDGDEVTFTGF 434 (456)
Q Consensus 419 ~~~fL~~GD~V~~~~~ 434 (456)
...|++.||.|.++.|
T Consensus 40 k~iwI~~GD~VlVe~~ 55 (83)
T smart00652 40 KKVWIRRGDIVLVDPW 55 (83)
T ss_pred ccEEEcCCCEEEEEec
Confidence 5899999999999865
No 28
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=35.20 E-value=61 Score=26.12 Aligned_cols=16 Identities=19% Similarity=0.017 Sum_probs=14.3
Q ss_pred CCCCCCCCCEEEEEEE
Q 012786 419 TRKFLEDGDEVTFTGF 434 (456)
Q Consensus 419 ~~~fL~~GD~V~~~~~ 434 (456)
.+.|+.+||.|.+|.|
T Consensus 41 ~rI~I~~GD~V~Ve~s 56 (68)
T TIGR00008 41 HYIRILPGDKVKVELS 56 (68)
T ss_pred ccEEECCCCEEEEEEC
Confidence 5889999999999975
No 29
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=33.40 E-value=2.2e+02 Score=23.59 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=19.4
Q ss_pred CceeEEEEEEEeeCCCCCCeEEEecccccccCCHHHHHHHH
Q 012786 333 KNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHH 373 (456)
Q Consensus 333 ~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~qlIa~l 373 (456)
+...|.+.| ||+..+-..- -++.++++.+
T Consensus 15 ~~~~m~I~V--------NG~~~~~~~~----~tl~~LL~~l 43 (84)
T PRK06083 15 AMVLITISI--------NDQSIQVDIS----SSLAQIIAQL 43 (84)
T ss_pred CCceEEEEE--------CCeEEEcCCC----CcHHHHHHHc
Confidence 345666666 9998775431 3588888875
No 30
>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=33.28 E-value=64 Score=26.41 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=14.2
Q ss_pred CCCCCCCCCEEEEEEE
Q 012786 419 TRKFLEDGDEVTFTGF 434 (456)
Q Consensus 419 ~~~fL~~GD~V~~~~~ 434 (456)
...|+++||.|.++.|
T Consensus 35 k~iwI~~GD~V~Ve~~ 50 (77)
T cd05793 35 KRVWINEGDIVLVAPW 50 (77)
T ss_pred ccEEEcCCCEEEEEec
Confidence 4799999999999965
No 31
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=29.41 E-value=67 Score=27.16 Aligned_cols=16 Identities=31% Similarity=0.233 Sum_probs=14.2
Q ss_pred CCCCCCCCCEEEEEEE
Q 012786 419 TRKFLEDGDEVTFTGF 434 (456)
Q Consensus 419 ~~~fL~~GD~V~~~~~ 434 (456)
...|+.+||.|.+|.|
T Consensus 43 ~rIrIl~GD~V~VE~s 58 (87)
T PRK12442 43 HRIRILAGDRVTLELS 58 (87)
T ss_pred eeEEecCCCEEEEEEC
Confidence 4789999999999976
No 32
>PF01176 eIF-1a: Translation initiation factor 1A / IF-1; InterPro: IPR006196 The S1 domain of around 70 amino acids, originally identified in ribosomal protein S1, is found in a large number of RNA-associated proteins. It has been shown that S1 proteins bind RNA through their S1 domains with some degree of sequence specificity. This type of S1 domain is found in translation initiation factor 1. The solution structure of one S1 RNA-binding domain from Escherichia coli polynucleotide phosphorylase has been determined []. It displays some similarity with the cold shock domain (CSD) (IPR002059 from INTERPRO). Both the S1 and the CSD domain consist of an antiparallel beta barrel of the same topology with 5 beta strands. This fold is also shared by many other proteins of unrelated function and is known as the OB fold. However, the S1 and CSD fold can be distinguished from the other OB folds by the presence of a short 3(10) helix at the end of strand 3. This unique feature is likely to form a part of the DNA/RNA-binding site. This entry is specific for bacterial, chloroplastic and eukaryotic IF-1 type S1 domains.; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1JT8_A 3I4O_A 1AH9_A 1ZO1_W 1D7Q_A 2OQK_A 2DGY_A 1HR0_W.
Probab=29.02 E-value=48 Score=25.97 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=11.3
Q ss_pred CCCCCCCCCEEEEEEE
Q 012786 419 TRKFLEDGDEVTFTGF 434 (456)
Q Consensus 419 ~~~fL~~GD~V~~~~~ 434 (456)
...|++.||.|.++.|
T Consensus 38 ~~iwI~~GD~V~V~~~ 53 (65)
T PF01176_consen 38 KRIWIKRGDFVLVEPS 53 (65)
T ss_dssp TCC---TTEEEEEEES
T ss_pred eeEecCCCCEEEEEec
Confidence 6899999999999964
No 33
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=28.88 E-value=59 Score=26.71 Aligned_cols=16 Identities=25% Similarity=0.075 Sum_probs=14.2
Q ss_pred CCCCCCCCCEEEEEEE
Q 012786 419 TRKFLEDGDEVTFTGF 434 (456)
Q Consensus 419 ~~~fL~~GD~V~~~~~ 434 (456)
...|+.+||+|.++.|
T Consensus 43 ~~i~I~~GD~V~Ve~~ 58 (75)
T COG0361 43 NRIRILPGDVVLVELS 58 (75)
T ss_pred eeEEeCCCCEEEEEec
Confidence 3789999999999976
No 34
>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase. Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.
Probab=28.37 E-value=63 Score=32.05 Aligned_cols=22 Identities=27% Similarity=0.521 Sum_probs=17.6
Q ss_pred CCCCCCCCEEEEEEEEeCCCceeeeeceee
Q 012786 420 RKFLEDGDEVTFTGFCKGNGYTVGFGTCSG 449 (456)
Q Consensus 420 ~~fL~~GD~V~~~~~~~~~~~~~g~G~~~~ 449 (456)
..++++||+|+++ ++ |+|+++=
T Consensus 232 ~~~v~~Gd~v~~~--~~------glG~v~~ 253 (255)
T TIGR03220 232 LVPVKAGDNLRVS--IG------GIGSCSV 253 (255)
T ss_pred CeeCCCCCEEEEE--Ec------CCceEEE
Confidence 4579999999998 45 8998763
No 35
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=27.14 E-value=80 Score=26.60 Aligned_cols=18 Identities=28% Similarity=0.518 Sum_probs=15.4
Q ss_pred CcccCCCCEEEcCCCCCC
Q 012786 377 GCNLRSGDLLGTGTISGP 394 (456)
Q Consensus 377 ~~tL~pGDvI~TGTp~Gv 394 (456)
.-+|+.||.|.+||-.|.
T Consensus 24 ~GtL~~Gd~iv~G~~~Gk 41 (95)
T cd03701 24 NGTLKKGDVIVAGGTYGK 41 (95)
T ss_pred cCeEecCCEEEECCccce
Confidence 348999999999998774
No 36
>PRK04012 translation initiation factor IF-1A; Provisional
Probab=26.95 E-value=93 Score=26.85 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=14.2
Q ss_pred CCCCCCCCCEEEEEEE
Q 012786 419 TRKFLEDGDEVTFTGF 434 (456)
Q Consensus 419 ~~~fL~~GD~V~~~~~ 434 (456)
...|+++||.|.++.|
T Consensus 56 k~IwI~~GD~VlVe~~ 71 (100)
T PRK04012 56 KRMWIREGDVVIVAPW 71 (100)
T ss_pred ccEEecCCCEEEEEec
Confidence 4799999999999975
No 37
>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain. IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=25.33 E-value=1.1e+02 Score=25.03 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=13.9
Q ss_pred CCCCCCCCCEEEEEEE
Q 012786 419 TRKFLEDGDEVTFTGF 434 (456)
Q Consensus 419 ~~~fL~~GD~V~~~~~ 434 (456)
...|++.||.|.++.+
T Consensus 35 k~iwI~~GD~VlV~~~ 50 (78)
T cd04456 35 KNIWIKRGDFLIVDPI 50 (78)
T ss_pred cCEEEcCCCEEEEEec
Confidence 4699999999999865
No 38
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=24.17 E-value=2.3e+02 Score=27.35 Aligned_cols=55 Identities=18% Similarity=0.059 Sum_probs=36.8
Q ss_pred ccCCCCEEEcCCC--CCCcCCCCCcEEEEEecCccceec--------CCCC-CCCCCCCCEEEEEE
Q 012786 379 NLRSGDLLGTGTI--SGPEPESLGCLLELTWNGQKPLSL--------DGFT-RKFLEDGDEVTFTG 433 (456)
Q Consensus 379 tL~pGDvI~TGTp--~Gvg~~~~Gd~lE~~~~G~~~l~~--------~~~~-~~fL~~GD~V~~~~ 433 (456)
-.-|||+|++.-. .|-+....|..+.++..|.-..+. .... +..+|.||+|--+.
T Consensus 7 ~v~PGd~~a~~EE~~~G~gt~~~~g~i~Aa~~G~~~~d~~n~~~~V~p~~~~~~~~K~GdiV~grV 72 (188)
T COG1096 7 FVLPGDVLAVIEEFLPGEGTYEEGGEIRAAATGVVRRDDKNRVISVKPGKKTPPLPKGGDIVYGRV 72 (188)
T ss_pred EEcCcceeeeeeeeecCCCeEeECCEEEEeecccEEEcccceEEEeccCCCCCCCCCCCCEEEEEE
Confidence 3569999999887 566655556666666655433322 2223 78899999998774
No 39
>PLN00208 translation initiation factor (eIF); Provisional
Probab=23.14 E-value=98 Score=28.59 Aligned_cols=16 Identities=13% Similarity=0.189 Sum_probs=14.3
Q ss_pred CCCCCCCCCEEEEEEE
Q 012786 419 TRKFLEDGDEVTFTGF 434 (456)
Q Consensus 419 ~~~fL~~GD~V~~~~~ 434 (456)
.+.|+++||.|.++.|
T Consensus 67 KrIWI~~GD~VlVel~ 82 (145)
T PLN00208 67 KKVWIAAGDIILVGLR 82 (145)
T ss_pred eeEEecCCCEEEEEcc
Confidence 4799999999999975
No 40
>PRK08582 hypothetical protein; Provisional
Probab=22.19 E-value=1.1e+02 Score=27.68 Aligned_cols=53 Identities=26% Similarity=0.361 Sum_probs=32.9
Q ss_pred cccCCCCEEEcCCCCCCcCCCCCcEEEEE--ecCccceec--CC---CCCCCCCCCCEEEEEE
Q 012786 378 CNLRSGDLLGTGTISGPEPESLGCLLELT--WNGQKPLSL--DG---FTRKFLEDGDEVTFTG 433 (456)
Q Consensus 378 ~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~--~~G~~~l~~--~~---~~~~fL~~GD~V~~~~ 433 (456)
|.++.|++ ..|++.++.. .|..+++. +.|.-.++- +. .....++.||.|++.+
T Consensus 1 m~~kvG~i-v~G~V~~I~~--fG~fV~L~~~~~GlVhiSels~~~v~~~~~~l~vGD~VkvkV 60 (139)
T PRK08582 1 MSIEVGSK-LQGKVTGITN--FGAFVELPEGKTGLVHISEVADNYVKDINDHLKVGDEVEVKV 60 (139)
T ss_pred CCCcCCCE-EEEEEEEEEC--CeEEEEECCCCEEEEEeeccCcccccccccccCCCCEEEEEE
Confidence 56788887 5888877655 46666664 223222221 11 1246789999999986
No 41
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=21.50 E-value=68 Score=26.29 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=20.1
Q ss_pred CCCCCCCCCCEEEEEEEEe-CCCceeeeec
Q 012786 418 FTRKFLEDGDEVTFTGFCK-GNGYTVGFGT 446 (456)
Q Consensus 418 ~~~~fL~~GD~V~~~~~~~-~~~~~~g~G~ 446 (456)
..+++|-|++.+--= .++ .+.++||||+
T Consensus 46 kGr~~lVp~~~iaYV-eiG~~~~r~VGF~~ 74 (74)
T PF11305_consen 46 KGRRVLVPAASIAYV-EIGSEEKRRVGFGT 74 (74)
T ss_pred CCCEEEEECCcEEEE-EEcCCCCCccCCCC
Confidence 347899999988642 344 4668899985
No 42
>PTZ00329 eukaryotic translation initiation factor 1A; Provisional
Probab=20.11 E-value=1.3e+02 Score=28.19 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=14.0
Q ss_pred CCCCCCCCCEEEEEEE
Q 012786 419 TRKFLEDGDEVTFTGF 434 (456)
Q Consensus 419 ~~~fL~~GD~V~~~~~ 434 (456)
...|+++||.|.++.|
T Consensus 67 K~IWI~~GD~VlVel~ 82 (155)
T PTZ00329 67 KRVWINIGDIILVSLR 82 (155)
T ss_pred eeEEecCCCEEEEecc
Confidence 4699999999999865
No 43
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=20.11 E-value=86 Score=26.61 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=14.9
Q ss_pred cCcccCCCCEEEcCCCCC
Q 012786 376 NGCNLRSGDLLGTGTISG 393 (456)
Q Consensus 376 ~~~tL~pGDvI~TGTp~G 393 (456)
+.-+|+.||.|.+|+-.|
T Consensus 23 ~~GtL~~Gd~iv~G~~~g 40 (95)
T cd03702 23 QNGTLKVGDVLVAGTTYG 40 (95)
T ss_pred EcCeEeCCCEEEEccccc
Confidence 344899999999999766
Done!