Query 012786
Match_columns 456
No_of_seqs 258 out of 1890
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 16:12:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012786.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012786hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hyo_A Fumarylacetoacetate hyd 100.0 3.1E-94 1.1E-98 748.8 31.6 415 3-455 2-418 (421)
2 3lzk_A Fumarylacetoacetate hyd 100.0 2.4E-66 8.2E-71 529.5 22.6 320 20-455 22-357 (359)
3 3r6o_A 2-hydroxyhepta-2,4-dien 100.0 1.1E-56 3.9E-61 452.9 24.5 291 20-455 22-322 (329)
4 4dbf_A 2-hydroxyhepta-2,4-dien 100.0 1.5E-52 5E-57 416.6 17.1 218 109-454 64-288 (288)
5 3rr6_A Putative uncharacterize 100.0 1.1E-51 3.8E-56 406.2 16.6 214 109-455 48-264 (265)
6 2dfu_A Probable 2-hydroxyhepta 100.0 4.7E-50 1.6E-54 394.9 21.4 216 111-455 33-260 (264)
7 1wzo_A HPCE; structural genomi 100.0 7.6E-49 2.6E-53 382.5 21.8 213 112-454 30-245 (246)
8 3l53_A Putative fumarylacetoac 100.0 5E-49 1.7E-53 379.2 18.1 189 115-397 3-199 (224)
9 3s52_A Putative fumarylacetoac 100.0 1.7E-48 5.6E-53 374.8 15.7 189 178-452 30-221 (221)
10 2q18_X 2-keto-3-deoxy-D-arabin 100.0 1.1E-47 3.9E-52 383.1 15.2 280 20-455 1-290 (293)
11 1saw_A Hypothetical protein FL 100.0 6.9E-46 2.4E-50 357.3 16.7 192 178-454 29-223 (225)
12 1gtt_A 4-hydroxyphenylacetate 100.0 2.2E-45 7.5E-50 384.0 16.4 216 109-454 207-425 (429)
13 1nkq_A Hypothetical 28.8 kDa p 100.0 8.1E-43 2.8E-47 342.5 17.0 170 179-396 21-222 (259)
14 1gtt_A 4-hydroxyphenylacetate 100.0 7.2E-42 2.5E-46 357.4 18.9 195 127-415 5-201 (429)
15 2eb4_A 2-OXO-HEPT-3-ENE-1,7-di 100.0 6.1E-36 2.1E-40 294.7 10.2 189 177-452 66-267 (267)
16 2wqt_A 2-keto-4-pentenoate hyd 100.0 2.6E-35 9E-40 290.7 14.6 187 177-454 66-263 (270)
17 2k52_A Uncharacterized protein 60.3 8.4 0.00029 29.9 3.9 64 378-444 1-68 (80)
18 3l53_A Putative fumarylacetoac 51.2 13 0.00044 34.9 4.2 13 421-433 197-209 (224)
19 2kl0_A Putative thiamin biosyn 47.3 46 0.0016 25.6 6.2 19 350-373 6-24 (73)
20 2khj_A 30S ribosomal protein S 40.1 25 0.00086 28.8 3.9 64 378-444 27-98 (109)
21 1tyg_B YJBS; alpha beta barrel 38.3 35 0.0012 27.3 4.3 28 335-373 19-46 (87)
22 1wi5_A RRP5 protein homolog; S 38.2 20 0.00067 29.9 2.9 66 377-445 16-91 (119)
23 2k9x_A Tburm1, uncharacterized 34.6 25 0.00086 29.4 3.0 61 364-431 35-95 (110)
24 1f0z_A THis protein; ubiquitin 31.5 30 0.001 25.7 2.7 20 350-373 6-25 (66)
25 2dgy_A MGC11102 protein; EIF-1 30.2 61 0.0021 27.2 4.7 16 419-434 50-65 (111)
26 1kl9_A Eukaryotic translation 30.0 32 0.0011 31.3 3.1 63 380-445 13-85 (182)
27 2k5p_A THis protein, thiamine- 28.2 53 0.0018 25.5 3.8 22 350-373 6-27 (78)
28 2k4k_A GSP13, general stress p 27.5 41 0.0014 28.6 3.2 64 378-444 3-74 (130)
29 3i4o_A Translation initiation 22.8 48 0.0016 26.2 2.5 16 419-434 50-65 (79)
30 2ba0_A Archeal exosome RNA bin 22.7 1.3E+02 0.0045 28.0 6.0 67 380-446 5-79 (229)
31 3esi_A Uncharacterized protein 21.9 84 0.0029 26.9 4.1 26 420-445 75-100 (129)
32 1s4k_A Putative cytoplasmic pr 20.3 48 0.0016 28.4 2.2 24 256-284 17-40 (120)
No 1
>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A
Probab=100.00 E-value=3.1e-94 Score=748.78 Aligned_cols=415 Identities=57% Similarity=1.055 Sum_probs=370.1
Q ss_pred cccccccCCCCCCCCCCCCcEEEecCCCCCCceEEEECCeEEechhhhhcCCCCCCC-ccCCCccCcccHHHHHhcCchh
Q 012786 3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPI-LKDSDCFLQPNLNKFLSLGRPA 81 (456)
Q Consensus 3 ~~~~~~~~~~~~f~~~n~p~g~fs~~~~~~~r~Gv~~gd~vvDL~~~~~~~~~~~~~-~~~~~~~~~~~l~~fl~~g~~~ 81 (456)
.+|||+++.+++|||+|||||+|++.+++.+|+|+++||+|+||+++.. .+.... ...+++|.+++|++||++|++.
T Consensus 2 ~~s~~~~~~~~~f~~~nlp~g~f~~~~~~~~r~Gv~igd~v~DL~~~~~--~~~~~~~~~~~~~~~~~tL~~~l~~g~~~ 79 (421)
T 1hyo_A 2 SMSFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKH--LFTGPALSKHQHVFDETTLNNFMGLGQAA 79 (421)
T ss_dssp -CCSSCCCTTCSCCTTTCCEEEEECSSCCSCEEEEEETTEEEETTTTGG--GCCSTTTTTCGGGGGSSSSHHHHHHCHHH
T ss_pred CcccccCCCCCCCCccCceEEEEEeCCCCceEEEEEeCCEEEeHHHhHh--hcccccccccccccCCcCHHHHHhcChHH
Confidence 4799999999999999999999999777889999999999999987754 222111 1124577889999999999999
Q ss_pred HHHHHHHHHHHHhcCchhhccchhcccccccccCCcEEeCCcccCccccccccHHHHHhhchhccCCCCCCCcchhhhhh
Q 012786 82 WKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILK 161 (456)
Q Consensus 82 ~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~v~l~~Pv~~~~~~d~~~~~~H~~~~g~~~~~~~~~~~~~~~~~~~ 161 (456)
|.++|+.|++++......++++..+.....+|+++|+|++|+++++|+||++|++|+.|++++|++.+++++|||+
T Consensus 80 ~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~v~ll~P~~~~~y~df~~~~~Ha~~~g~~~r~~~~~~~p~~~---- 155 (421)
T 1hyo_A 80 WKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHLPATIGDYTDFYSSRQHATNVGIMFRGKENALLPNWL---- 155 (421)
T ss_dssp HHHHHHHHHHHHTTSSTHHHHCHHHHHHHEEESTTCEEECSSCCSCEEEECCCHHHHHHHHHHHHCGGGCSCTTTT----
T ss_pred HHHHHHHHHHHhhccCccccccccccccccccHhHCeEcCCcccCcEEEEechHHHHHHHHhhhccccccCCCCcC----
Confidence 9999999999886543333333333345578999999999999999999999999999999988876667789997
Q ss_pred hcccccceeeeehhhhhhhhhhhccccCCCCCCccEEEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeE
Q 012786 162 STSKQGIVSVLTLVYYSIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELE 241 (456)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~P~~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~E 241 (456)
+.|++|+|++|||+++|++|.+|.+++.+.++..|.|.+++++|||+|
T Consensus 156 --------------------------------~~Pv~f~k~~ssvv~~g~~I~~P~~~~~~~~~~~p~~~~s~~lD~E~E 203 (421)
T 1hyo_A 156 --------------------------------HLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELE 203 (421)
T ss_dssp --------------------------------TSCCEEECCSTTEEETTCCEECCEEEECSCTTSCCEEEECSCEECBEE
T ss_pred --------------------------------CCCEEEEcccceEEcCCCeEECCCCcccCccccccccccccCceEEEE
Confidence 789999999999999999999999877665555688888999999999
Q ss_pred EEEEEcCCCCCCCCCCHhHHhhhheeEEEeeccchhhHhhhhhcCCCCccccccCCCCCCccccccccCCccCCCCCCCC
Q 012786 242 MAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDP 321 (456)
Q Consensus 242 LavVIGk~l~~g~~vs~eeA~~~I~Gytl~ND~SaRdiQ~~e~~~lg~~~~KsfdtslGPwiVt~del~~~~~~~~~~d~ 321 (456)
|||||||+++.|++|++++|++||+||+++||||+||+|.|+++++||++||+|+|+|||||||.|+|+++|+..+.+||
T Consensus 204 LavvIG~~~~~g~~v~~~~A~~~I~Gy~l~ND~SaRdiQ~~e~~plg~~~aK~f~t~iGPwivt~d~l~p~~~~~~~~~~ 283 (421)
T 1hyo_A 204 MAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDP 283 (421)
T ss_dssp EEEEECSCCCTTCCCCHHHHGGGEEEEEEEECCEEHHHHHHHCTTTCCCHHHHTCEEECSCBEEHHHHGGGEECCCCCSS
T ss_pred EEEEECcccccCCCCCHHHHHHhhcEEEEEEeccHHhhhhhhcccCCCccccCcCCCCCCeecchhhcccccccccccCC
Confidence 99999999887899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCceeEEEEEEEeeCCCCCCeEEEecccccccCCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCc
Q 012786 322 QPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGC 401 (456)
Q Consensus 322 ~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd 401 (456)
+++|||+++++..++|++++++|++++.||+++|++|+++|+|+++|||+|++|++|+|+|||||+||||+|++..+.||
T Consensus 284 ~~l~~l~~~~~~~~~l~l~~~vN~~~~~~Ge~~q~~~~~~m~~~~~~lIa~lss~g~tL~pGDlI~TGTpsG~~~~~~G~ 363 (421)
T 1hyo_A 284 KPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGS 363 (421)
T ss_dssp CCCGGGCCCSCCEECCEEEEEEECTTCSSCEEEEEEETTCCSSCHHHHHHHHHTTSCCCCTTCEEECCCCCCSSGGGCCB
T ss_pred cccccccccCCCccceEEEEEEecCCCCCCEEEEecCHHhhcCCHHHHHHHHHHCCCccCCCCEEEcCCCCCCCCCCCcc
Confidence 99999998877877888888876555445999999999999999999999996799999999999999999999999999
Q ss_pred EEEEEecCccceec-CCCCCCCCCCCCEEEEEEEEeCCCceeeeeceeeEEeeCC
Q 012786 402 LLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPST 455 (456)
Q Consensus 402 ~lE~~~~G~~~l~~-~~~~~~fL~~GD~V~~~~~~~~~~~~~g~G~~~~~v~p~~ 455 (456)
++|++++|++++++ ++.+++||||||+|+++++|.++|++||||+|+|+|+|+.
T Consensus 364 ~lE~~~~G~~~v~l~~g~~~~fL~~GD~V~~~~~~~~~g~~igfG~~~~~V~~a~ 418 (421)
T 1hyo_A 364 MLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPAL 418 (421)
T ss_dssp HHHHTTTTTSCEECSTTCEESSCCTTCEEEEEEEEECSSCEEEEEEEEEEEECCC
T ss_pred eEEEEecCcceeeccCCCCCccCCCCCEEEEEEEECCCCceeeeeeeEEEEecCC
Confidence 99999999999999 7778999999999999999988999999999999999985
No 2
>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti}
Probab=100.00 E-value=2.4e-66 Score=529.48 Aligned_cols=320 Identities=20% Similarity=0.251 Sum_probs=258.8
Q ss_pred CCcEEEecCCCCCCceEEEECC--eEEechhhhhcCCCCCCCccCCCccCcccHHHHHhcCchhHHHHHHHHHHHHhcCc
Q 012786 20 LPYGVFKPEPASVARPGVAIGE--YVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNE 97 (456)
Q Consensus 20 ~p~g~fs~~~~~~~r~Gv~~gd--~vvDL~~~~~~~~~~~~~~~~~~~~~~~~l~~fl~~g~~~~~~~r~~l~~~~~~~~ 97 (456)
|+|.+|...+ ...|++++.+| .++++.. .+++|++||+ .|+.++..|+.+.....
T Consensus 22 MKlat~~~~~-~~g~l~vvs~Dl~~~~~~~~------------------~~~~l~~~l~----~w~~~~~~l~~l~~~l~ 78 (359)
T 3lzk_A 22 MKLATLKDST-RDGKLVVVSKDLTRCSEVGH------------------IARTLQAALD----DWAHAGPRLERVAEGIE 78 (359)
T ss_dssp CEEEEECCSS-SSCEEEEECTTSSEEEECTT------------------TCSSHHHHHH----THHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCC-cccEEEEEeCcccccccccc------------------cCcCHHHHHh----ccHhhHHHHHHHHHHHh
Confidence 9999997643 34577777663 3333221 1379999998 58887777776554211
Q ss_pred hhhccchhcccccccccCCcEEeCCcccC-ccccccccHHHHHhhchhccCCCCCCCcchhhhhhhcccccceeeeehhh
Q 012786 98 ATLRDNANLRQKSLVPMGKVEMLLPMEIG-DYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVY 176 (456)
Q Consensus 98 ~~~~~~~~~~~~~~~pl~~v~l~~Pv~~~-~~~d~~~~~~H~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (456)
. .....+|+++|+|++|++++ .|++|+||.+|+.++++.+ + +++|++|+
T Consensus 79 ~--------~~~~~~~~~~v~ll~Pv~~~~~~~~g~NY~~Ha~e~~~~~-g--~~~p~~~~------------------- 128 (359)
T 3lzk_A 79 T--------GAQPTMRFHEHDAASPLPRAFQWADGSAYVNHVELVRKAR-N--AEMPASFW------------------- 128 (359)
T ss_dssp H--------TCSCCEECCGGGBCCSSSSCSCEEEECCCHHHHHHHHHHT-T--CCCCGGGG-------------------
T ss_pred c--------CCCCCCcCccceEcCCCCCCCEEEEEcCHHHHHHHHHHhc-C--CCCCCccc-------------------
Confidence 0 12244689999999999854 7899999999999998753 2 35688887
Q ss_pred hhhhhhhhccccCCCCCCccEEEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCC
Q 012786 177 YSIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPI 256 (456)
Q Consensus 177 ~~~~~~~~~~~~p~~~~~~P~~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~v 256 (456)
+.|++|+|+++|++++|++|.+|.. ++++|||+||||||||. |++|
T Consensus 129 -----------------~~P~~F~k~~ssv~g~~~~I~~P~~--------------s~~lD~E~ELavVIGk~---~~~v 174 (359)
T 3lzk_A 129 -----------------TDPLIYQGGSDSFLGPRDPILMADD--------------AWGIDMEGEAAVIVDDV---PMGA 174 (359)
T ss_dssp -----------------TSCCEEEECCSSCBCTTSCEEESCT--------------TSCEECCEEEEEEECCB---CTTC
T ss_pred -----------------CccEEEECCCceEECCCCCEECCCC--------------CCCeeEEEEEEEEECCC---CCCC
Confidence 7899999999999999999999975 88999999999999998 9999
Q ss_pred CHhHHhhhheeEEEeeccchhhHhhhhhcC-CCCccccccCCCCCCccccccccCCccCCCCCCCCCCCccccccCCCce
Q 012786 257 DVNEAADHIFGVMLMNDWSARDIQAWEYVP-LGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNY 335 (456)
Q Consensus 257 s~eeA~~~I~Gytl~ND~SaRdiQ~~e~~~-lg~~~~KsfdtslGPwiVt~del~~~~~~~~~~d~~~~~~l~~~~~~~l 335 (456)
++++|++||+|||++||||+||+|.+++.+ ++|++||+| +++||||||+|+|+++|.. ...++
T Consensus 175 ~~e~A~~~I~Gytl~ND~SaRD~Q~~~~~~g~~~~~~K~~-~~~gP~iVt~del~~~~~~---------------~~~~L 238 (359)
T 3lzk_A 175 TLDEAKAAIRLVMLVNDVSLRGLIPGELAKGFGFYQSKPS-SAFSPVAVTPEELGEAWDG---------------GKLHL 238 (359)
T ss_dssp CHHHHHHTEEEEEEEECCEETTTHHHHHHHTSCCSTTSCC-CEECSCEECHHHHGGGBCS---------------SCBCS
T ss_pred CHHHHHhhhcEEEEEEeccHHHhhhhhhccCCCccccccc-cccCCccccHHHcCccccC---------------Cccce
Confidence 999999999999999999999999999864 899999996 6799999999999875431 01356
Q ss_pred eEEEEEEEeeCCCCCCeEEEecc-cccccCCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCC-----------CCCcEE
Q 012786 336 DISLEVQIKPAGKEDSCVVTRSN-FKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPE-----------SLGCLL 403 (456)
Q Consensus 336 ~i~l~V~~~~~~~~NGe~~q~~~-t~~m~~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~-----------~~Gd~l 403 (456)
.|+++| ||+++|++| +++|+|+++|||+|+ |++++|+|||||+||||+|+..- ..||++
T Consensus 239 ~l~~~v--------NGe~~q~~~~t~~Mif~~~~lIa~l-S~~~tL~pGDvI~TGTpsGv~~~~~~~~~~~~~~G~~~l~ 309 (359)
T 3lzk_A 239 PLHVDL--------NGEPFGRANAGIDMTFDFPQLIVHA-ARTRPLSAGTIIGSGTVSNKLEGGPGRPVSEGGAGYSCIA 309 (359)
T ss_dssp BEEEEE--------TTEEEECCBTTSSCSSCHHHHHHHH-TTTSCBCTTEEEECCSCCCCBTTBCCCCGGGTSCBCSSHH
T ss_pred EEEEEE--------CCEEEEcCcCcccccCCHHHHHHHH-hCCCCcCCCCEEEcCCcCCCCcccccccccccccccccch
Confidence 777777 999999999 999999999999998 89999999999999999999442 268888
Q ss_pred EEEecCccceecCCCCCCCCCCCCEEEEEEEEeCCCceeeeeceeeEEeeCC
Q 012786 404 ELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPST 455 (456)
Q Consensus 404 E~~~~G~~~l~~~~~~~~fL~~GD~V~~~~~~~~~~~~~g~G~~~~~v~p~~ 455 (456)
|++ +.+++..+..+++||||||+|++++. +.+| +++||+|+|+|+++.
T Consensus 310 E~~--~~~~~~~g~~~~~fL~~GD~V~i~~~-~~~g-~~~~G~l~n~V~~~~ 357 (359)
T 3lzk_A 310 ELR--MIETIEGGAPKTQFLKFGDVVRIEMK-DRTG-HSIFGAIEQKVGKYE 357 (359)
T ss_dssp HHH--HHHHHHHSSCCSCCBCTTCEEEEEEB-CTTS-CBSSCCEEEEEEECC
T ss_pred hhh--hhhhhccCCCCCCcCCCCCEEEEEEE-cCCC-cccccceEEEEEeCC
Confidence 873 23333322234579999999999963 3444 789999999999874
No 3
>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus}
Probab=100.00 E-value=1.1e-56 Score=452.90 Aligned_cols=291 Identities=20% Similarity=0.282 Sum_probs=219.2
Q ss_pred CCcEEEecCCCCCCceEEEE-CCeEEechhhhhcCCCCCCCccCCCccCcccHHHHHhcCchhHHHHHHHHHHHHhcCch
Q 012786 20 LPYGVFKPEPASVARPGVAI-GEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEA 98 (456)
Q Consensus 20 ~p~g~fs~~~~~~~r~Gv~~-gd~vvDL~~~~~~~~~~~~~~~~~~~~~~~~l~~fl~~g~~~~~~~r~~l~~~~~~~~~ 98 (456)
|.|..++....+..|.|+++ |+.|+||+.+...... .| .....+++ .|+.++..|++.+...
T Consensus 22 m~~~l~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~---------~~--~~~~~l~~----~ld~~~~~l~~~l~~~-- 84 (329)
T 3r6o_A 22 MNLRIVSFAGADQWQPGVLIDDDTVAPLAPMLARHDI---------QV--SSARELIA----LLPQISPLISDELAGG-- 84 (329)
T ss_dssp CCCEEEEBC----CCEEEEEETTEEEECSCC--------------------CHHHHHT----THHHHHHHHHHTC-----
T ss_pred eeEEEEEEccCCCccceEEecCCEEEEchhhhccccc---------cc--cchhhHHH----HHHHHHHHHHHHHhcC--
Confidence 44444444444566778764 8999999876542100 01 23444554 4555666666433221
Q ss_pred hhccchhcccccccccCCcEEeCCcccC-c-cccccccHHHHHhhchhccCCCCCCCcchhhhhhhcccccceeeeehhh
Q 012786 99 TLRDNANLRQKSLVPMGKVEMLLPMEIG-D-YTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVY 176 (456)
Q Consensus 99 ~~~~~~~~~~~~~~pl~~v~l~~Pv~~~-~-~~d~~~~~~H~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (456)
....+|+++|++++|++++ + ++++.||.+|++ .+. + .|+|
T Consensus 85 ---------~~~~~~~~~v~llaPv~~p~kI~cvG~NY~~H~~-~g~-------~-~P~~-------------------- 126 (329)
T 3r6o_A 85 ---------SFEPVPLDSVALGAPIPEPGQVIALGFNYPTHSD-TDS-------P-LPKM-------------------- 126 (329)
T ss_dssp -------------CBGGGSCBCCSSSSCSCEEEEESCSTTC---------------------------------------
T ss_pred ---------CCCCccCccceEcCCCCCCCeEEEEcccHHHHHH-hCC-------C-CCCc--------------------
Confidence 2345799999999999865 4 567888998887 431 1 2222
Q ss_pred hhhhhhhhccccCCCCCCccEEEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCC
Q 012786 177 YSIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPI 256 (456)
Q Consensus 177 ~~~~~~~~~~~~p~~~~~~P~~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~v 256 (456)
+.|++|+|+++++++++++|.+|.. +.++|||+||||||||. |++|
T Consensus 127 -----------------~~P~~F~K~~~s~~g~~~~I~~P~~--------------~~~~d~E~ELavVIGk~---~~~v 172 (329)
T 3r6o_A 127 -----------------ADPVVFMKSPTSISGPRDAVIAPRT--------------SHALDYEIEIAVVIGKP---GYRI 172 (329)
T ss_dssp ------------------CCEEEEECGGGEECTTCCEEECTT--------------CSCEECCEEEEEEECSC---BSSC
T ss_pred -----------------cCCEEEEcccceEECCCCceECCCC--------------CCCccEEEEEEEEECCC---CCCC
Confidence 3799999999999999999999976 78999999999999999 9999
Q ss_pred CHhHHhhhheeEEEeeccchhhHhhh---hhc--CCCCccccccCCC--CCCccccccccCCccCCCCCCCCCCCccccc
Q 012786 257 DVNEAADHIFGVMLMNDWSARDIQAW---EYV--PLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAE 329 (456)
Q Consensus 257 s~eeA~~~I~Gytl~ND~SaRdiQ~~---e~~--~lg~~~~Ksfdts--lGPwiVt~del~~~~~~~~~~d~~~~~~l~~ 329 (456)
++++|++||+|||++||||+||+|.. .+. ..+|++||+|||+ +|||+||+|++++
T Consensus 173 ~~e~A~~~I~Gytv~NDvSaRd~q~~~g~~~~~~~~~w~~aK~fd~~~plGP~ivt~del~d------------------ 234 (329)
T 3r6o_A 173 ERSQAIKHVAGYMLANDITARDVALPFGFGGSPLQAQVVRGKGYPTFCPTGPWLFTTGSDTT------------------ 234 (329)
T ss_dssp CGGGGGGGEEEEEEEECCEEHHHHCTTC------CCCHHHHHCSTTSEEBCSCEEECTTCSS------------------
T ss_pred CHHHHHhhheEEEEEEEeEHHHHhhhhcccccccCCccccccCcCcCcccCCeEcChhhcCC------------------
Confidence 99999999999999999999999863 222 2468999999996 9999999999864
Q ss_pred cCCCceeEEEEEEEeeCCCCCCeEEEecccccccCCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCcEEEEEecC
Q 012786 330 KISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNG 409 (456)
Q Consensus 330 ~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~G 409 (456)
+.++.|+++| ||+++|++++++|+|+++++|+|+ |++++|+|||||+||||+|+|.-
T Consensus 235 --~~~l~l~l~v--------NGe~~q~g~t~dMif~~~~lIa~l-S~~~tL~pGDvI~TGTp~GvG~~------------ 291 (329)
T 3r6o_A 235 --FETFDFELRI--------NGELRQSGSTVDMTLGFAEVVETV-SATIALRAGDIILTGTPGGCGFQ------------ 291 (329)
T ss_dssp --CCCCEEEEEE--------TTEEEEEEEGGGCSSCHHHHHHHH-HTTSCBCTTCEEECCCCSCCGGG------------
T ss_pred --hhhcEEEEEE--------CCEEEEecCHHHhcCCHHHHHHHH-HcCCCcCCCCEEEcCCccccCCC------------
Confidence 3568888888 999999999999999999999998 89999999999999999998641
Q ss_pred ccceecCCCCCCCCCCCCEEEEEEEEeCCCceeeeeceeeEEeeCC
Q 012786 410 QKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPST 455 (456)
Q Consensus 410 ~~~l~~~~~~~~fL~~GD~V~~~~~~~~~~~~~g~G~~~~~v~p~~ 455 (456)
..+++||++||+|++++ + |||+++|+|+...
T Consensus 292 -------~~p~~~l~~GD~V~~ei--~------glG~l~n~V~~~~ 322 (329)
T 3r6o_A 292 -------FDPPRYLRPGDVIEAHS--A------KLGKMRLPVHDEK 322 (329)
T ss_dssp -------SSSCCCCCTTCEEEEEE--T------TTEEEEEEEEECC
T ss_pred -------CCCCccCCCCCEEEEEE--c------CceEEEEEEEeCC
Confidence 23678999999999984 5 8999999998653
No 4
>4dbf_A 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxaloacetate decarboxylase; 1.90A {Corynebacterium glutamicum} PDB: 4dbh_A
Probab=100.00 E-value=1.5e-52 Score=416.60 Aligned_cols=218 Identities=22% Similarity=0.267 Sum_probs=185.1
Q ss_pred ccccccCCcEEeCCcccCc-cccccccHHHHHhhchhccCCCCCCCcchhhhhhhcccccceeeeehhhhhhhhhhhccc
Q 012786 109 KSLVPMGKVEMLLPMEIGD-YTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIFHLQVYRV 187 (456)
Q Consensus 109 ~~~~pl~~v~l~~Pv~~~~-~~d~~~~~~H~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (456)
+..+++++|+|++|+.+.+ ++.+.||.+|++++++. ++
T Consensus 64 g~~~~~~~v~ll~Pv~p~ki~cvG~NY~~H~~E~~~~-----------------------------------------~~ 102 (288)
T 4dbf_A 64 GREWPLKDVRLLAPMLPSKVVAIGRNYADHVAEVFKK-----------------------------------------SA 102 (288)
T ss_dssp EEEEEGGGSEEECSCCCSCEEEEESCBCC---------------------------------------------------
T ss_pred CceeecccCeEcCCCCCceEEEEeccHHHHHHHhccC-----------------------------------------CC
Confidence 3458999999999998654 35567788887776520 12
Q ss_pred cCCCCCCccEEEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCCCHhHHhhhhee
Q 012786 188 VPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFG 267 (456)
Q Consensus 188 ~p~~~~~~P~~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~vs~eeA~~~I~G 267 (456)
.| +.|++|+|+++++++++++|.+|.. ++++|||+|||+||||+ |++|++++|++||+|
T Consensus 103 ~p----~~P~~F~K~~~sv~g~~~~I~~P~~--------------~~~~d~E~ELavVIGk~---~~~v~~~~A~~~I~G 161 (288)
T 4dbf_A 103 ES----LPPTLFLKPPTAVTGPESPIRIPSF--------------ATKVEFEGELAVVIGKP---CKNVKADDWKSVVLG 161 (288)
T ss_dssp -C----CCCEEEEECGGGEECTTCCEEECTT--------------CCSEECCEEEEEEECSC---BSSCCGGGGGGGEEE
T ss_pred CC----CCCEEEEeCcceeeCCCCceECCCC--------------CCceeEEEEEEEEECCC---cCCCCHHHHhhheeE
Confidence 33 7899999999999999999999975 78999999999999999 999999999999999
Q ss_pred EEEeeccchhhHhhhhhcCCCCccccccCCC--CCCccccccccCCccCCCCCCCCCCCccccccCCCceeEEEEEEEee
Q 012786 268 VMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKP 345 (456)
Q Consensus 268 ytl~ND~SaRdiQ~~e~~~lg~~~~Ksfdts--lGPwiVt~del~~~~~~~~~~d~~~~~~l~~~~~~~l~i~l~V~~~~ 345 (456)
||++||||+||+|.++. +|+++|+|||+ +||||+|..++.+ +.++.|+++|
T Consensus 162 ytv~nDvsaRd~Q~~~~---~w~~aK~fd~~~plGP~ivt~~~~~d--------------------~~~l~i~~~v---- 214 (288)
T 4dbf_A 162 FTIINDVSSRDLQFADG---QWARAKGIDTFGPIGPWIETDINSID--------------------LDNLPIKARL---- 214 (288)
T ss_dssp EEEEECCEEHHHHHHHS---SSHHHHHSTTCEEEEEEEECCGGGSC--------------------TTSCEEEEEE----
T ss_pred EEEEEEeEhHHhhhccC---CccccccCCCCceeCCccccccccCC--------------------ccccEEEEEE----
Confidence 99999999999998764 79999999996 9999999654332 3568888888
Q ss_pred CCCCCC----eEEEecccccccCCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCcEEEEEecCccceecCCCCCC
Q 012786 346 AGKEDS----CVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRK 421 (456)
Q Consensus 346 ~~~~NG----e~~q~~~t~~m~~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~G~~~l~~~~~~~~ 421 (456)
|| +++|++++++|+|+++++|+|+ |+++||+|||||+||||+|++
T Consensus 215 ----NG~~~~e~~Q~~~t~~mi~~~~~lIa~l-S~~~tL~pGDvI~TGTP~Gvg-------------------------- 263 (288)
T 4dbf_A 215 ----THDGETQLKQDSNSNQMIMKMGEIIEFI-TASMTLLPGDVIATGSPAGTE-------------------------- 263 (288)
T ss_dssp ----EETTEEEEEEEEEGGGBSSCHHHHHHHH-HTTSCBCTTCEEECCCCSCCC--------------------------
T ss_pred ----cCCcceEEEEecCHHHhcCCHHHHHHHH-hCCCCcCCCCEEEcCCCCCCe--------------------------
Confidence 99 9999999999999999999998 899999999999999999864
Q ss_pred CCCCCCEEEEEEEEeCCCceeeeeceeeEEeeC
Q 012786 422 FLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 454 (456)
Q Consensus 422 fL~~GD~V~~~~~~~~~~~~~g~G~~~~~v~p~ 454 (456)
+|++||+|+++ ++ |+|+++|+|+.|
T Consensus 264 ~l~~GD~v~v~--ie------giG~L~n~v~~~ 288 (288)
T 4dbf_A 264 AMVDGDYIEIE--IP------GIGKLGNPVVDA 288 (288)
T ss_dssp BCCTTCEEEEE--ET------TTEEEEEEEEEC
T ss_pred ecCCCCEEEEE--EC------CcEEEEEEEEeC
Confidence 38999999998 46 999999999865
No 5
>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A
Probab=100.00 E-value=1.1e-51 Score=406.25 Aligned_cols=214 Identities=29% Similarity=0.344 Sum_probs=185.5
Q ss_pred ccccccCCcEEeCCcccCcc-ccccccHHHHHhhchhccCCCCCCCcchhhhhhhcccccceeeeehhhhhhhhhhhccc
Q 012786 109 KSLVPMGKVEMLLPMEIGDY-TDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIFHLQVYRV 187 (456)
Q Consensus 109 ~~~~pl~~v~l~~Pv~~~~~-~d~~~~~~H~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (456)
+..+++++|+|++|+.+.++ +.+.||.+|++++ +++
T Consensus 48 ~~~~~~~~v~ll~P~~p~ki~cvG~NY~~h~~e~-------------------------------------------g~~ 84 (265)
T 3rr6_A 48 GRQWPLADVRLLAPILASKVVAMGKNYAAHAAEM-------------------------------------------GGD 84 (265)
T ss_dssp EEEEEGGGSEECCSSCCSCEEEESCCBCSSGGGT-------------------------------------------TSS
T ss_pred CcEeecccCeEcCCCCCceEEEEEcCHHHHHHHh-------------------------------------------CCC
Confidence 34589999999999986442 3344455555444 444
Q ss_pred cCCCCCCccEEEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCCCHhHHhhhhee
Q 012786 188 VPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFG 267 (456)
Q Consensus 188 ~p~~~~~~P~~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~vs~eeA~~~I~G 267 (456)
.| +.|++|+|+++|+++++++|.+|.. +.++|||+|||+||||+ +++|++++|++||+|
T Consensus 85 ~P----~~P~~F~K~~~s~~g~~~~I~~P~~--------------~~~~d~E~ELavVIGk~---~~~v~~~~A~~~V~G 143 (265)
T 3rr6_A 85 PP----ESPVIFIKPNTSIIGPGLPIQLPPS--------------ATEVHHEGELAIVIGRP---CKDVPAARAAENILG 143 (265)
T ss_dssp CC----CCCCEEEECGGGEECTTSCEECCTT--------------CSCEEECEEEEEEECSC---BSSCCGGGTGGGEEE
T ss_pred CC----CCCEEEEeCcceEeCCCCceECCCC--------------CCceeEEEEEEEEECCc---CCCCCHHHHHhheeE
Confidence 45 7899999999999999999999975 78999999999999999 999999999999999
Q ss_pred EEEeeccchhhHhhhhhcCCCCccccccCCC--CCCccccccccCCccCCCCCCCCCCCccccccCCCceeEEEEEEEee
Q 012786 268 VMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKP 345 (456)
Q Consensus 268 ytl~ND~SaRdiQ~~e~~~lg~~~~Ksfdts--lGPwiVt~del~~~~~~~~~~d~~~~~~l~~~~~~~l~i~l~V~~~~ 345 (456)
||++||||+||+|.++. +|+++|+|||+ +||||+|. ++ +.++.|+++|
T Consensus 144 yt~~nDvsaRd~q~~~~---~w~~aK~fd~~~plGP~ivt~--~d---------------------~~~l~i~~~v---- 193 (265)
T 3rr6_A 144 YTIGNDVSARDHQRADG---QWTRAKGHDTFCPLGPWIVTD--LD---------------------PADLEIRTEV---- 193 (265)
T ss_dssp EEEEECCEEHHHHHHHS---SSHHHHHSTTCEEEEEEEESS--CC---------------------GGGCEEEEEE----
T ss_pred EEEEEEeEhHHhhhccC---CcceecccCCCcccCCcCcCC--CC---------------------cccCEEEEEE----
Confidence 99999999999998753 79999999996 99999983 43 2568899988
Q ss_pred CCCCCCeEEEecccccccCCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCcEEEEEecCccceecCCCCCCCCCC
Q 012786 346 AGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLED 425 (456)
Q Consensus 346 ~~~~NGe~~q~~~t~~m~~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~G~~~l~~~~~~~~fL~~ 425 (456)
||+++|++++++|+|+++++|+|+ |+++||+|||||+||||+|++ +|++
T Consensus 194 ----NGe~~q~g~t~~mi~~~~~lIa~l-S~~~tL~pGDvI~TGTp~Gvg--------------------------~l~~ 242 (265)
T 3rr6_A 194 ----NGQVRQRSRTSLLLHDVGAIVEWV-SAVMTLLPGDVILTGTPEGVG--------------------------PIVD 242 (265)
T ss_dssp ----TTEEEEEEEGGGBSSCHHHHHHHH-HHHSCBCTTCEEECCCCSCCE--------------------------ECCT
T ss_pred ----CCEEEEEECHHhhcCCHHHHHHHH-hcCCCcCCCCEEEeCCCCCce--------------------------eCCC
Confidence 999999999999999999999998 899999999999999999864 4799
Q ss_pred CCEEEEEEEEeCCCceeeeeceeeEEeeCC
Q 012786 426 GDEVTFTGFCKGNGYTVGFGTCSGKIVPST 455 (456)
Q Consensus 426 GD~V~~~~~~~~~~~~~g~G~~~~~v~p~~ 455 (456)
||+|+++ ++ |+|+++|+|+.+.
T Consensus 243 GD~v~v~--i~------giG~l~n~v~~~~ 264 (265)
T 3rr6_A 243 GDTVSVT--IE------GIGTLSNPVVRKA 264 (265)
T ss_dssp TCEEEEE--ET------TTEEEEEEEECC-
T ss_pred CCEEEEE--EC------CcEEEEEEEEeCC
Confidence 9999988 46 9999999998653
No 6
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus}
Probab=100.00 E-value=4.7e-50 Score=394.93 Aligned_cols=216 Identities=23% Similarity=0.287 Sum_probs=180.2
Q ss_pred ccccCCcEEeCCcccCcc-ccccccHHHHHhhchhccCCCCCCCcchhhhhhhcccccceeeeehhhhhhhhhhhccccC
Q 012786 111 LVPMGKVEMLLPMEIGDY-TDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIFHLQVYRVVP 189 (456)
Q Consensus 111 ~~pl~~v~l~~Pv~~~~~-~d~~~~~~H~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 189 (456)
.+|+++|+|++|+++.++ +.+.||.+|+++++..+. ++.|
T Consensus 33 ~~~~~~~~ll~P~~p~~i~~~g~Ny~~H~~e~~~~~~---------------------------------------~~~p 73 (264)
T 2dfu_A 33 RYDLASVTLLPPATPTKIVCVGRNYREHIREMGHDFG---------------------------------------EDLP 73 (264)
T ss_dssp EEEGGGSCEECSCCCSCEEEECSCBC----------------------------------------------------CC
T ss_pred ccccccCeEcCCccCCeEEEEeCcHHHHHHHhccccc---------------------------------------CCCC
Confidence 478999999999976654 457789999998874321 1233
Q ss_pred CCCCCccEEEeCCCCceeeCC---------CeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCCCHhH
Q 012786 190 YFRFHLPIAYHGRASSVVISG---------TDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNE 260 (456)
Q Consensus 190 ~~~~~~P~~f~k~~ssv~~~g---------~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~vs~ee 260 (456)
+.|++|+|++++++++| ++|.+|.. ++++|||+|||+||||+ ++++++++
T Consensus 74 ----~~P~~f~k~~~s~~~~~~~~rp~g~~~~i~~p~~--------------~~~~d~E~ELavvig~~---~~~v~~~~ 132 (264)
T 2dfu_A 74 ----KEPGLFLKGPNALARPGNPRDPWGTAEPVPYPFF--------------TEELHYEGELAVVVGDR---MRHVPPEK 132 (264)
T ss_dssp ----SSCCEEEECGGGEECCCBTTBHHHHSCCEEECSS--------------CSCEECCEEEEEEECSC---BSSCCHHH
T ss_pred ----CCCEEEEeccceEEccCCcccccCCCcceecCCC--------------CCceeEEEEEEEEECCC---CCCCCHHH
Confidence 67999999999999999 77777754 67899999999999999 89999999
Q ss_pred HhhhheeEEEeeccchhhHhhhhhcCCCCccccccCCC--CCCccccccccCCccCCCCCCCCCCCccccccCCCceeEE
Q 012786 261 AADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDIS 338 (456)
Q Consensus 261 A~~~I~Gytl~ND~SaRdiQ~~e~~~lg~~~~Ksfdts--lGPwiVt~del~~~~~~~~~~d~~~~~~l~~~~~~~l~i~ 338 (456)
|++||+||+++||||+||+|.++ ++|+++|+|||+ +|||+++ +++ +.++.|+
T Consensus 133 a~~~I~gy~~~nDvt~Rd~q~~~---~~~~~aK~~d~~~plGp~i~~--~~d---------------------~~~l~i~ 186 (264)
T 2dfu_A 133 ALDHVLGYTVAVDITARDVQKKD---LQWVRAKSADKFLPLGPWLET--DLN---------------------PQDTWVR 186 (264)
T ss_dssp HGGGEEEEEEEECCEEHHHHHHS---SSSHHHHCSTTCEEEEEEEES--SCC---------------------TTSCEEE
T ss_pred HHHHhhEeEEEEEeEhhhhhhcc---CCCceeecCCCCEEECCcCcc--ccC---------------------CCccEEE
Confidence 99999999999999999999875 489999999994 9999998 453 2568899
Q ss_pred EEEEEeeCCCCCCeEEEecccccccCCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCcEEEEEecCccceecCCC
Q 012786 339 LEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGF 418 (456)
Q Consensus 339 l~V~~~~~~~~NGe~~q~~~t~~m~~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~G~~~l~~~~~ 418 (456)
++| ||+++|++++++|+|+++++|+|+ |++++|+|||||+||||+|++
T Consensus 187 ~~v--------NGe~~q~g~t~~mi~~~~~lia~l-s~~~tL~pGDvI~TGTp~Gvg----------------------- 234 (264)
T 2dfu_A 187 TYV--------NGTLRQEGHTSQMIFSVAEILSYI-STFMTLEPLDVVLTGTPEGVG----------------------- 234 (264)
T ss_dssp EEE--------TTEEEEEEEGGGBSSCHHHHHHHH-HTTSCBCTTCEEECCCCSCCC-----------------------
T ss_pred EEE--------CCEEEEEecHHHhhcCHHHHHHHH-hcCCCcCCCCEEEeCCCCCcc-----------------------
Confidence 988 999999999999999999999998 899999999999999999864
Q ss_pred CCCCCCCCCEEEEEEEEeCCCceeeeeceeeEEeeCC
Q 012786 419 TRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPST 455 (456)
Q Consensus 419 ~~~fL~~GD~V~~~~~~~~~~~~~g~G~~~~~v~p~~ 455 (456)
+|++||+|++++ + |+|+++|+|+++.
T Consensus 235 ---~l~~GD~v~~~i--~------glG~l~~~v~~~~ 260 (264)
T 2dfu_A 235 ---ALRPGDRLEVAV--E------GVGTLFTLIGPKE 260 (264)
T ss_dssp ---BCCTTCEEEEEE--T------TTEEEEEEEEEEC
T ss_pred ---ccCCCCEEEEEE--e------CcEEEEEEEEecC
Confidence 489999999984 5 8999999998653
No 7
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=7.6e-49 Score=382.45 Aligned_cols=213 Identities=23% Similarity=0.338 Sum_probs=179.5
Q ss_pred cccCCcEEeCCcccCc-cccccccHHHHHhhchhccCCCCCCCcchhhhhhhcccccceeeeehhhhhhhhhhhccccCC
Q 012786 112 VPMGKVEMLLPMEIGD-YTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIFHLQVYRVVPY 190 (456)
Q Consensus 112 ~pl~~v~l~~Pv~~~~-~~d~~~~~~H~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 190 (456)
+++++++|++|+.+.. ++.+.||++|++++|. +.|
T Consensus 30 ~~~~~~~~l~P~~p~~i~~vG~ny~~h~~e~g~-------------------------------------------~~P- 65 (246)
T 1wzo_A 30 HRPEDVTWLLPFTPGKILGVALNYADHAEELGL-------------------------------------------SRP- 65 (246)
T ss_dssp ECGGGSEECCSSCCCCEEEEESCBC------CC-------------------------------------------CCC-
T ss_pred cccccCEEcCCCCCCeEEEEEcChHHHHHHhCC-------------------------------------------CCC-
Confidence 5788999999995544 3456777888777652 223
Q ss_pred CCCCccEEEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCCCHhHHhhhheeEEE
Q 012786 191 FRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVML 270 (456)
Q Consensus 191 ~~~~~P~~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~vs~eeA~~~I~Gytl 270 (456)
..|++|.|++++++++|++|.+|.+ +.++|||+|||+||||+ ++++++++|++||+||++
T Consensus 66 ---~~P~~f~k~~~~~~~~g~~i~~p~~--------------~~~~~~E~ELavvig~~---~~~v~~~~a~~~i~g~~~ 125 (246)
T 1wzo_A 66 ---EEPALFWKPNTSLLPHKGVVLYPKG--------------ARFVHYEVELAVVVGRP---MKRVRAKDALDYVLGYTI 125 (246)
T ss_dssp ---SSCEEEEECGGGEECTTCCEEECTT--------------CSCEECCEEEEEEECSC---BSSCCHHHHGGGEEEEEE
T ss_pred ---CCCEEEEECcccEeCCCCeEECCCC--------------CCceeEEEEEEEEECCC---CCCCCHHHHHhheeEEEE
Confidence 6799999999999999999999975 67899999999999999 999999999999999999
Q ss_pred eeccchhhHhhhhhcCCCCccccccCCC--CCCccccccccCCccCCCCCCCCCCCccccccCCCceeEEEEEEEeeCCC
Q 012786 271 MNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGK 348 (456)
Q Consensus 271 ~ND~SaRdiQ~~e~~~lg~~~~Ksfdts--lGPwiVt~del~~~~~~~~~~d~~~~~~l~~~~~~~l~i~l~V~~~~~~~ 348 (456)
+||+|+||+|..++ .+|+++|+|+++ +|||++ .+++.+ +.++.|+++|
T Consensus 126 ~nD~s~rd~q~~~~--~~~~~~K~~d~~~~lGp~i~-~~~i~d--------------------~~~l~i~~~v------- 175 (246)
T 1wzo_A 126 ANDLVARDYVTNTF--RPPIRAKGRDTFLPLGPFLV-VEEVED--------------------PQDLWLRAYV------- 175 (246)
T ss_dssp EECCEEGGGC------CCCHHHHCSTTCEEEEEEEE-CSCCSC--------------------TTSCEEEEEE-------
T ss_pred EEECchHHhccccc--CCceeeccCCCCEEECCcCc-HHHcCC--------------------CcccEEEEEE-------
Confidence 99999999998764 478999999985 999999 788753 2568888888
Q ss_pred CCCeEEEecccccccCCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCcEEEEEecCccceecCCCCCCCCCCCCE
Q 012786 349 EDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDE 428 (456)
Q Consensus 349 ~NGe~~q~~~t~~m~~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~G~~~l~~~~~~~~fL~~GD~ 428 (456)
||+++|++++++|+|++.++|+|+ |++++|+|||||+||||+|++ +|++||+
T Consensus 176 -NGe~~q~g~t~~mi~~~~~lia~l-s~~~tL~pGDvI~TGTp~gvg--------------------------~l~~GD~ 227 (246)
T 1wzo_A 176 -NGELRQEGHTSRMLYSVAELLEFI-SEFMTLEPYDVLLTGTPKGIS--------------------------QVRPGDV 227 (246)
T ss_dssp -TTEEEEEEEGGGBSSCHHHHHHHH-HTTSCBCTTCEEECCCCCCSC--------------------------EECTTCE
T ss_pred -CCEEEEeeCHHHhCCCHHHHHHHH-hCCCCcCCCCEEEeCCCCCce--------------------------ECCCCCE
Confidence 999999999999999999999998 899999999999999999864 3799999
Q ss_pred EEEEEEEeCCCceeeeeceeeEEeeC
Q 012786 429 VTFTGFCKGNGYTVGFGTCSGKIVPS 454 (456)
Q Consensus 429 V~~~~~~~~~~~~~g~G~~~~~v~p~ 454 (456)
|+++ ++ |+|+++|+|+..
T Consensus 228 v~~~--i~------glG~l~~~v~~~ 245 (246)
T 1wzo_A 228 MRLE--IE------GLGALENPIEEE 245 (246)
T ss_dssp EEEE--ET------TSCEEEEEEEEC
T ss_pred EEEE--Ec------CcEEEEEEEEeC
Confidence 9998 45 899999999864
No 8
>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural genomics, PSI-2, protein structure initiative; HET: TAR; 2.10A {Oleispira antarctica} PDB: 3v77_A*
Probab=100.00 E-value=5e-49 Score=379.15 Aligned_cols=189 Identities=23% Similarity=0.247 Sum_probs=166.2
Q ss_pred CCcEEeCCcccC-c--cccccccHHHHHhhchhccCCCCCCCcchhhhhhhcccccceeeeehhhhhhhhhhhccccCCC
Q 012786 115 GKVEMLLPMEIG-D--YTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIFHLQVYRVVPYF 191 (456)
Q Consensus 115 ~~v~l~~Pv~~~-~--~~d~~~~~~H~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 191 (456)
+.|+|++|++.+ . ++.+.||.+|++++|. +.|
T Consensus 3 ~~~~~~~P~p~~~~ki~cvG~Ny~~h~~e~g~-------------------------------------------~~p-- 37 (224)
T 3l53_A 3 ELILNQRPYPRDLGKIVCVGRNYAAHAKELNN-------------------------------------------PIP-- 37 (224)
T ss_dssp CCEETTEECSSCCCEEEEEECCSHHHHHHTTC-------------------------------------------CCC--
T ss_pred ccceecCCCCCCCCeEEEEccCHHHHHHHhCC-------------------------------------------CCC--
Confidence 568999999754 2 4567778888888752 223
Q ss_pred CCCccEEEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCCCHhHHhhhheeEEEe
Q 012786 192 RFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLM 271 (456)
Q Consensus 192 ~~~~P~~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~vs~eeA~~~I~Gytl~ 271 (456)
+.|++|+|++++++++|++|.+|.. +.++|||+|||+||||+ |+++++++|++||+||+++
T Consensus 38 --~~P~~F~K~~~s~~~~g~~I~~P~~--------------~~~~d~E~ELavvIgk~---~~~i~~~~A~~~I~Gy~~~ 98 (224)
T 3l53_A 38 --SSPILFIKPASSAVPFGPVFSIPKD--------------QGSVHHELEIAILIGKA---LSRASTEQVAESIAGIGLG 98 (224)
T ss_dssp --SSCEEEEEEGGGEEESCSEECCCSS--------------SSCEEECEEEEEEECSC---BSSCCHHHHHHHEEEEEEE
T ss_pred --CCCEEEecCCceEECCCCeEecCCC--------------CCCcceEEEEEEEECCC---CCCCCHHHHHhhccEEEEE
Confidence 7799999999999999999999976 78999999999999999 9999999999999999999
Q ss_pred eccchhhHhhhhhc-CCCCccccccCCC--CCCcccccc--ccCCccCCCCCCCCCCCccccccCCCceeEEEEEEEeeC
Q 012786 272 NDWSARDIQAWEYV-PLGPFLGKSFGTT--LSPWIVTLD--ALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPA 346 (456)
Q Consensus 272 ND~SaRdiQ~~e~~-~lg~~~~Ksfdts--lGPwiVt~d--el~~~~~~~~~~d~~~~~~l~~~~~~~l~i~l~V~~~~~ 346 (456)
||||+||+|.++++ .++|.++|+|||+ +||| ++.+ ++.+ +.++.|+++|
T Consensus 99 nDvs~Rd~q~~~~~~g~~w~~aK~fd~~~plGp~-v~~~~~~~~d--------------------~~~l~i~l~v----- 152 (224)
T 3l53_A 99 LDLTLRDVQDQLKEKGHPWERAKSFDGACPLTEF-VAVNLASEDE--------------------WQAIGLTLEK----- 152 (224)
T ss_dssp ECCEEHHHHHHHHHTTCCSHHHHSSTTSEEECCB-BCCCCSSGGG--------------------GGGEEEEEEE-----
T ss_pred EEeEhHHhhhhhhhcCCCcceeeccCCCcccCCc-EeCchhhcCC--------------------hhccEEEEEE-----
Confidence 99999999998765 4779999999995 9997 5777 7654 3578899988
Q ss_pred CCCCCeEEEecccccccCCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCC
Q 012786 347 GKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPE 397 (456)
Q Consensus 347 ~~~NGe~~q~~~t~~m~~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~ 397 (456)
||+++|++++++|+|+++++|+|+ |++++|+|||||+||||+|++++
T Consensus 153 ---NGe~~q~g~t~~mi~~~~~lia~l-S~~~tL~pGDvI~TGTp~Gvg~l 199 (224)
T 3l53_A 153 ---NGQFQQQGSSAEMLFPILPLIAHM-SEHFSLQPGDVILTGTPAGVGPL 199 (224)
T ss_dssp ---TTEEEEEEEGGGCSSCHHHHHHHH-HHHSCBCTTCEEECCCCSCCEEC
T ss_pred ---CCEEEEEEcHHHhcCCHHHHHHHH-HCCCCcCCCCEEEcCCCCCCEEc
Confidence 999999999999999999999998 89999999999999999997653
No 9
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} SCOP: d.177.1.1 PDB: 1nr9_A
Probab=100.00 E-value=1.7e-48 Score=374.79 Aligned_cols=189 Identities=19% Similarity=0.238 Sum_probs=170.7
Q ss_pred hhhhhhhccccCCCCCCccEEEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCCC
Q 012786 178 SIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPID 257 (456)
Q Consensus 178 ~~~~~~~~~~~p~~~~~~P~~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~vs 257 (456)
.+|.+|++++.| +.|++|+|++++++++|++|.+|.. ++++|||+|||+||||+ +++++
T Consensus 30 ~~h~~e~g~~~p----~~P~~F~K~~~~~~~~g~~i~~p~~--------------~~~~d~E~ELavvig~~---~~~v~ 88 (221)
T 3s52_A 30 AEHIKEMGSTAS----VEPVLFIKPETALCDIRQPVSIPKD--------------FGSVHHEIELAVLIGTP---LKQAS 88 (221)
T ss_dssp HHHHHHTTCCCC----SSCEEEEEEGGGEEETTSCBCCCSS--------------SSCEEECEEEEEEECSC---BSSCC
T ss_pred HHHHHHhCCCCC----CceEEEEcCCceEeCCCCeEECCCC--------------CCCccEEEEEEEEECCC---CCCCC
Confidence 367888888888 9999999999999999999999976 68999999999999999 89999
Q ss_pred HhHHhhhheeEEEeeccchhhHhhhhhc-CCCCccccccCCC--CCCccccccccCCccCCCCCCCCCCCccccccCCCc
Q 012786 258 VNEAADHIFGVMLMNDWSARDIQAWEYV-PLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKN 334 (456)
Q Consensus 258 ~eeA~~~I~Gytl~ND~SaRdiQ~~e~~-~lg~~~~Ksfdts--lGPwiVt~del~~~~~~~~~~d~~~~~~l~~~~~~~ 334 (456)
+++|++||+||+++||||+||+|.+++. .++|.++|+||++ +|||+ +.+++++ +.+
T Consensus 89 ~~~A~~~I~Gy~~~nDvs~Rd~q~~~~~~~~~~~~aK~~d~~~plGp~i-~~~~~~d--------------------~~~ 147 (221)
T 3s52_A 89 EDRVARAIAGYGVALDLTLRELQAGFKKAGQPWEKAKAFDGSCPISGFI-PVAEFGD--------------------AQQ 147 (221)
T ss_dssp HHHHHHHEEEEEEEECCEEHHHHHHHHHHTCCSHHHHSSTTCEEECCBE-EHHHHCC--------------------GGG
T ss_pred HHHHHhhheEEEEEEEeEHHHHhhhhhccCCCcceeecCCCCccccCce-ehhhcCC--------------------ccc
Confidence 9999999999999999999999988654 4789999999996 99998 5677753 356
Q ss_pred eeEEEEEEEeeCCCCCCeEEEecccccccCCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCcEEEEEecCcccee
Q 012786 335 YDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLS 414 (456)
Q Consensus 335 l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~G~~~l~ 414 (456)
+.|+++| ||+++|++++++|+|+++++|+|+ |++++|+|||||+||||+|+++
T Consensus 148 l~i~l~v--------NGe~~q~g~t~~mi~~~~~lia~l-S~~~tL~pGDvI~TGTp~Gvg~------------------ 200 (221)
T 3s52_A 148 ADLSLTI--------NGEIRQQGNTRDMITPIIPLISYM-SRFFTLRAGDIVLTGTPQGVGP------------------ 200 (221)
T ss_dssp CEEEEEE--------TTEEEEEEEGGGBSSCHHHHHHHH-HHHSCBCTTCEEECCCCSCCEE------------------
T ss_pred eEEEEEE--------CCEEEEEEcHHHccCCHHHHHHHH-hCCCCcCCCCEEEeCCCCccee------------------
Confidence 8899988 999999999999999999999998 8999999999999999998743
Q ss_pred cCCCCCCCCCCCCEEEEEEEEeCCCceeeeeceeeEEe
Q 012786 415 LDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIV 452 (456)
Q Consensus 415 ~~~~~~~fL~~GD~V~~~~~~~~~~~~~g~G~~~~~v~ 452 (456)
|++||+|+++ ++ |+| ++|+|+
T Consensus 201 --------l~~GD~v~~~--i~------glG-l~~~v~ 221 (221)
T 3s52_A 201 --------MQSGDMLKIM--LN------GKT-VNTRII 221 (221)
T ss_dssp --------ECTTCEEEEE--ET------TEE-EEEEBC
T ss_pred --------cCCCCEEEEE--Ee------CeE-EEEEEC
Confidence 7899999888 45 899 999874
No 10
>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A
Probab=100.00 E-value=1.1e-47 Score=383.06 Aligned_cols=280 Identities=20% Similarity=0.179 Sum_probs=205.9
Q ss_pred CCcEEEecCCCCCCceEEEECCeEEechhhhhcCCCCCCCccCCCccCcccHHHHHhcCchhHHHHHHHHHHHHhcCchh
Q 012786 20 LPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEAT 99 (456)
Q Consensus 20 ~p~g~fs~~~~~~~r~Gv~~gd~vvDL~~~~~~~~~~~~~~~~~~~~~~~~l~~fl~~g~~~~~~~r~~l~~~~~~~~~~ 99 (456)
|+|.+|...+ +..|+|++.++.|+||+....... ...++|.++|+.+...+. ++ ..
T Consensus 1 Mkl~~~~~~~-g~~~~gvv~~~~v~~l~~~~~~~~-----------~~~~~l~~~l~~~~~~~~-~~----~~------- 56 (293)
T 2q18_X 1 MKLFRVVKRG-YYISYAILDNSTIIRLDEDPIKAL-----------MRYSENKEVLGDRVTGID-YQ----SL------- 56 (293)
T ss_dssp CEEEEEEETT-EEEEEEECTTSCEEEESSCHHHHH-----------HHHHHHCCCCEEEESSCC-HH----HH-------
T ss_pred CEEEEEEeCC-CCEEEEEEECCEEEECcccccccc-----------ccCcCHHHHHhCChhhhh-Hh----hc-------
Confidence 7889997632 458999999999999975320000 012456666664432211 11 10
Q ss_pred hccchhcccccccccCCcEEeCCcccCcc-ccccccHH----HHHhhchhccCCCCCCCcchhhhhhhcccccceeeeeh
Q 012786 100 LRDNANLRQKSLVPMGKVEMLLPMEIGDY-TDFFSSMH----HAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTL 174 (456)
Q Consensus 100 ~~~~~~~~~~~~~pl~~v~l~~Pv~~~~~-~d~~~~~~----H~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (456)
...+++++++|++|++++++ +.+.||.+ |+.+++.. +...+.+++++
T Consensus 57 ---------~~~~~~~~v~ll~Pv~p~~i~~vG~NY~~~~~~h~~e~~~~--~~~~~~~~~~~----------------- 108 (293)
T 2q18_X 57 ---------LKSFQINDIRITKPIDPPEVWGSGISYEMARERYSEENVAK--ILGKTIYEKVY----------------- 108 (293)
T ss_dssp ---------HHHSEETTEEECCSSCCSCEEEEESCBC---------CCCE--ETTEEHHHHHH-----------------
T ss_pred ---------CCCCCcccceEeCCcCcceEEEEEechhhhhHHHHHHhccc--ccccccccccc-----------------
Confidence 11367899999999996553 55777876 66665410 00001011111
Q ss_pred hhhhhhhhhhccccCCCCCCccEEEeCC-CCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCC
Q 012786 175 VYYSIFHLQVYRVVPYFRFHLPIAYHGR-ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELG 253 (456)
Q Consensus 175 ~~~~~~~~~~~~~~p~~~~~~P~~f~k~-~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g 253 (456)
.| ..|++|+|+ +++++++|++|.+|.. ++++|||+|||+||||+ +
T Consensus 109 -------------~~----~~P~~F~k~~~~~~~g~~~~i~~p~~--------------~~~~d~E~ELavvIg~~---~ 154 (293)
T 2q18_X 109 -------------DA----VRPEIFFKATPNRCVGHGEAIAVRSD--------------SEWTLPEPELAVVLDSN---G 154 (293)
T ss_dssp -------------HS----SSCEEEEEECGGGEECTTSCEEECTT--------------CSCEECCEEEEEEECTT---C
T ss_pred -------------CC----CCCEEEECCCCCeEecCCCEEEcCCC--------------CCCcceEEEEEEEECCC---C
Confidence 13 679999996 7999999999999976 78899999999999998 6
Q ss_pred CCCCHhHHhhhheeEEEeeccchhhHhhhhhcCCCCccccccCCC--CCCccccccccCCccCCCCCCCCCCCccccccC
Q 012786 254 KPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKI 331 (456)
Q Consensus 254 ~~vs~eeA~~~I~Gytl~ND~SaRdiQ~~e~~~lg~~~~Ksfdts--lGPwiVt~del~~~~~~~~~~d~~~~~~l~~~~ 331 (456)
+|+|||++||||+||+|.+. +.+|.+||+|||+ +|||++|+|++.+
T Consensus 155 ----------~i~Gyt~~nDvs~Rd~q~~~--~~~~~~aK~~d~~~plGP~ivt~dei~d-------------------- 202 (293)
T 2q18_X 155 ----------KILGYTIMDDVSARDLEAEN--PLYLPQSKIYAGCCAFGPVIVTSDEIKN-------------------- 202 (293)
T ss_dssp ----------CEEEEEEEEECEEHHHHHHC--GGGHHHHHCSTTCEEEEEEEECGGGCSC--------------------
T ss_pred ----------cCceEEEEEEeEeehhhhhc--ccCccccccCCCCEEECCcEeCHHHcCC--------------------
Confidence 39999999999999999763 2345699999996 9999999998764
Q ss_pred CCceeEEEEEEEeeCCCCCCeEEEec--ccccccCCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCcEEEEEecC
Q 012786 332 SKNYDISLEVQIKPAGKEDSCVVTRS--NFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNG 409 (456)
Q Consensus 332 ~~~l~i~l~V~~~~~~~~NGe~~q~~--~t~~m~~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~G 409 (456)
+.+++|+|+|++ ||+++|++ ++++|+|+++++|+|+ |++++|+|||||+||| |.++
T Consensus 203 ~~~l~i~l~v~~------NGe~~q~g~~~t~~mi~~~~~li~~l-s~~~tL~pGDvI~TGT--g~~p------------- 260 (293)
T 2q18_X 203 PYSLDITLKIVR------EGRVFFEGSVNTNKMRRKIEEQIQYL-IRDNPIPDGTILTTGT--AIVP------------- 260 (293)
T ss_dssp TTSCEEEEEEEE------TTEEEEEEEEEGGGBCSCHHHHHHHH-HTTCCCCTTEEEECCC--SCCC-------------
T ss_pred cceeEEEEEEEE------CCEEEEECCCCHHHhccCHHHHHHHH-HcCCCCCCCCEEECCC--CCCC-------------
Confidence 356888888765 99999997 6999999999999998 8999999999999999 2111
Q ss_pred ccceecCCCCCCCCCCCCEEEEEEEEeCCCceeeeeceeeEEeeCC
Q 012786 410 QKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPST 455 (456)
Q Consensus 410 ~~~l~~~~~~~~fL~~GD~V~~~~~~~~~~~~~g~G~~~~~v~p~~ 455 (456)
....||++||+|++++ + |||+++|+|+..+
T Consensus 261 --------~~~~~l~~GD~v~~~i--~------glG~l~n~v~~~~ 290 (293)
T 2q18_X 261 --------GRDKGLKDEDIVEITI--S------NIGTLITPVKKRR 290 (293)
T ss_dssp --------CTTCCCCTTCEEEEEE--T------TTEEEEEEEEECC
T ss_pred --------CCCcccCCCCEEEEEE--c------CcEEEEEEEEeee
Confidence 0247999999999984 5 8999999998765
No 11
>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1
Probab=100.00 E-value=6.9e-46 Score=357.27 Aligned_cols=192 Identities=21% Similarity=0.279 Sum_probs=163.2
Q ss_pred hhhhhhhccccCCCCCCccEEEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCCC
Q 012786 178 SIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPID 257 (456)
Q Consensus 178 ~~~~~~~~~~~p~~~~~~P~~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~vs 257 (456)
..|.+|++.+.| ..|++|.|++++++++|++|.+|.. ++.+|||+||||||||. |++++
T Consensus 29 ~~h~~e~g~~~P----~~P~~f~k~~~~~~~~g~~i~~p~~--------------~~~~~~E~ELavvig~~---~~~v~ 87 (225)
T 1saw_A 29 ADHVREMRSAVL----SEPVLFLKPSTAYAPEGSPILMPAY--------------TRNLHHELELGVVMGKR---CRAVP 87 (225)
T ss_dssp C---------------CCCCEEEEEGGGEEETTSCEECCTT--------------CSCEEECEEEEEEESSC---BCSCC
T ss_pred HHHHHHhCCCCC----CCCEEEECCcceeeCCCCeEECCCC--------------CCCccEEEEEEEEECCC---CCCCC
Confidence 357788888888 8899999999999999999999975 67899999999999998 99999
Q ss_pred HhHHhhhheeEEEeeccchhhHhhhhhc-CCCCccccccCCC--CCCccccccccCCccCCCCCCCCCCCccccccCCCc
Q 012786 258 VNEAADHIFGVMLMNDWSARDIQAWEYV-PLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKN 334 (456)
Q Consensus 258 ~eeA~~~I~Gytl~ND~SaRdiQ~~e~~-~lg~~~~Ksfdts--lGPwiVt~del~~~~~~~~~~d~~~~~~l~~~~~~~ 334 (456)
+++|++||+||+++||||+||+|.+++. .++|+++|+|+++ +|||+ +.+++.+ +.+
T Consensus 88 ~~~a~~~i~g~~~~nDvt~r~~q~~~~~~~~~~~~aK~~d~~~plGp~v-~~~~~~d--------------------~~~ 146 (225)
T 1saw_A 88 EAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFV-PKEKIPD--------------------PHK 146 (225)
T ss_dssp TTTGGGSEEEEEEEECCEEHHHHHHHHHHTCCSHHHHCSTTCEEECCCE-ETTSCSC--------------------TTS
T ss_pred HHHHHHhheEEEecccccHHHHhhhhhccCCCceEeecCCCCEecCCcc-cHHHcCC--------------------Cce
Confidence 9999999999999999999999998754 4789999999996 99996 6677643 356
Q ss_pred eeEEEEEEEeeCCCCCCeEEEecccccccCCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCcEEEEEecCcccee
Q 012786 335 YDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLS 414 (456)
Q Consensus 335 l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~G~~~l~ 414 (456)
+.|+++| ||+++|++++++|+|++.++|+|+ |++++|+|||||+||||+|+++
T Consensus 147 l~l~l~v--------NGe~~q~g~~~~mi~~~~~lia~l-s~~~tL~~GDvI~TGTp~Gvg~------------------ 199 (225)
T 1saw_A 147 LKLWLKV--------NGELRQEGETSSMIFSIPYIISYV-SKIITLEEGDIILTGTPKGVGP------------------ 199 (225)
T ss_dssp CEEEEEE--------TTEEEEEEEGGGBSSCHHHHHHHH-HTTSCBCTTCEEECCCCSCCEE------------------
T ss_pred eEEEEEE--------CCEEEEEEcHHHcCCCHHHHHHHH-hCCCCcCCCCEEEcCCCCCcee------------------
Confidence 8888888 999999999999999999999998 8999999999999999998643
Q ss_pred cCCCCCCCCCCCCEEEEEEEEeCCCceeeeeceeeEEeeC
Q 012786 415 LDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 454 (456)
Q Consensus 415 ~~~~~~~fL~~GD~V~~~~~~~~~~~~~g~G~~~~~v~p~ 454 (456)
|++||+|+++ ++ |+|+++|+|+..
T Consensus 200 --------l~~Gd~v~~~--i~------glG~l~~~v~~~ 223 (225)
T 1saw_A 200 --------VKENDEIEAG--IH------GLVSMTFKVEKP 223 (225)
T ss_dssp --------ECTTCEEEEE--ET------TTEEEEEEEECC
T ss_pred --------CCCCCEEEEE--EC------CcEEEEEEEEEe
Confidence 6899999888 45 899999999754
No 12
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Probab=100.00 E-value=2.2e-45 Score=383.99 Aligned_cols=216 Identities=20% Similarity=0.256 Sum_probs=184.9
Q ss_pred ccccccCCcEEeCCcccCccccccccHHHHHhhchhccCCCCCCCcchhhhhhhcccccceeeeehhhhhhhhhhhcccc
Q 012786 109 KSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIFHLQVYRVV 188 (456)
Q Consensus 109 ~~~~pl~~v~l~~Pv~~~~~~d~~~~~~H~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (456)
...+++++|+|++|++..-++.+.||.+|++++| .+.
T Consensus 207 ~~~~~~~~~~~~~p~~~~i~~vG~ny~~h~~e~g-------------------------------------------~~~ 243 (429)
T 1gtt_A 207 REVTTRKSFPTLPHPHGTLFALGLNYADHASELE-------------------------------------------FKP 243 (429)
T ss_dssp GGCCSCCCCCCCSSSCSCEEEESSCBCCC---------------------------------------------------
T ss_pred ccccccccceecCCCCCcEEEEEeCHHHHHHHhC-------------------------------------------CCC
Confidence 4568999999999998223456667777776654 223
Q ss_pred CCCCCCccEEEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCCCHhHHhhhheeE
Q 012786 189 PYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGV 268 (456)
Q Consensus 189 p~~~~~~P~~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~vs~eeA~~~I~Gy 268 (456)
| +.|++|.|++++++++|++|.+|.+ +.++|||+|||+||||+ |+++++++|++||+||
T Consensus 244 p----~~P~~f~k~~~~~~~~g~~i~~p~~--------------~~~~~~E~Elavvig~~---~~~v~~~~a~~~i~g~ 302 (429)
T 1gtt_A 244 P----EEPLVFLKAPNTLTGDNQTSVRPNN--------------IEYMHYEAELVVVIGKQ---ARNVSEADAMDYVAGY 302 (429)
T ss_dssp C----CSCCEEEECGGGEECTTEEEEECTT--------------CSCEECCEEEEEEECSC---BSSCCTTTGGGGEEEE
T ss_pred C----CCCEEEEcCcceEeCCCCeEEcCCC--------------CCCccEEEEEEEEECCC---CCCCCHHHHHhhheEE
Confidence 4 6799999999999999999999975 68999999999999999 9999999999999999
Q ss_pred EEeeccchhh-HhhhhhcCCCCccccccCCC--CCCccccccccCCccCCCCCCCCCCCccccccCCCceeEEEEEEEee
Q 012786 269 MLMNDWSARD-IQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKP 345 (456)
Q Consensus 269 tl~ND~SaRd-iQ~~e~~~lg~~~~Ksfdts--lGPwiVt~del~~~~~~~~~~d~~~~~~l~~~~~~~l~i~l~V~~~~ 345 (456)
+++||+|+|| +|... .+|+++|+||++ +|||++|.+++++ +.++.|+++|
T Consensus 303 ~~~nD~t~Rd~lq~~~---~~w~~~K~~d~~~~lGp~iv~~~~~~d--------------------~~~l~i~l~v---- 355 (429)
T 1gtt_A 303 TVCNDYAIRDYLENYY---RPNLRVKSRDGLTPMLSTIVPKEAIPD--------------------PHNLTLRTFV---- 355 (429)
T ss_dssp EEEECCEEGGGCCSSS---SSCHHHHSCTTCEEBCSCCEEGGGCSC--------------------TTSCEEEEEE----
T ss_pred EEEEEcccchhhhhhc---CCccccccCCCCEEECCcccCHHHcCC--------------------CccceEEEEE----
Confidence 9999999999 58543 478999999996 9999999999854 2568899998
Q ss_pred CCCCCCeEEEecccccccCCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCcEEEEEecCccceecCCCCCCCCCC
Q 012786 346 AGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLED 425 (456)
Q Consensus 346 ~~~~NGe~~q~~~t~~m~~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~G~~~l~~~~~~~~fL~~ 425 (456)
||+++|++++++|+|++.++|+|+ |++++|+|||||+||||+|++ +|++
T Consensus 356 ----NGe~~q~g~~~~mi~~~~~lia~l-s~~~tL~~GDvI~TGTp~gvg--------------------------~l~~ 404 (429)
T 1gtt_A 356 ----NGELRQQGTTADLIFSVPFLIAYL-SEFMTLNPGDMIATGTPKGLS--------------------------DVVP 404 (429)
T ss_dssp ----TTEEEEEEEGGGBSSCHHHHHHHH-HTTSCBCTTCEEECCCCSCCC--------------------------BCCT
T ss_pred ----CCEEEEEeCHHHcCCCHHHHHHHH-hCCCCcCCCCEEEcCCCCCCe--------------------------ECCC
Confidence 999999999999999999999998 899999999999999999853 5899
Q ss_pred CCEEEEEEEEeCCCceeeeeceeeEEeeC
Q 012786 426 GDEVTFTGFCKGNGYTVGFGTCSGKIVPS 454 (456)
Q Consensus 426 GD~V~~~~~~~~~~~~~g~G~~~~~v~p~ 454 (456)
||+|++++ + |||+++|+|+..
T Consensus 405 GD~v~~~i--~------glG~l~~~v~~~ 425 (429)
T 1gtt_A 405 GDEVVVEV--E------GVGRLVNRIVSE 425 (429)
T ss_dssp TCEEEEEE--T------TTEEEEEEEEEH
T ss_pred CCEEEEEE--c------CcEEEEEEEEec
Confidence 99999984 5 899999999853
No 13
>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1
Probab=100.00 E-value=8.1e-43 Score=342.49 Aligned_cols=170 Identities=24% Similarity=0.299 Sum_probs=144.8
Q ss_pred hhhhhhccccCCCCCCccEEEeCCCCceeeC------------------------C-CeeecCCCCcCCCCCCCCCCCCC
Q 012786 179 IFHLQVYRVVPYFRFHLPIAYHGRASSVVIS------------------------G-TDIVRPRGQFAPSGNSPPPFGPS 233 (456)
Q Consensus 179 ~~~~~~~~~~p~~~~~~P~~f~k~~ssv~~~------------------------g-~~I~~P~g~~~~~~~~~p~~~~s 233 (456)
.|++|++++.| +.|++|.|++++++++ + ++|.+|.. +
T Consensus 21 ~H~~E~g~~~p----~~P~~F~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~p~~--------------~ 82 (259)
T 1nkq_A 21 AHIKELNNSTP----KQPFFFLKPTSSIVTPLSSSLVKTTRPANSTFNGLNEDGTNPGPIFIPRG--------------V 82 (259)
T ss_dssp SSGGGGGC--------CCCEEEECGGGEEBCTTCC------CCSCSCCCCCTTSCCBCCEEECTT--------------C
T ss_pred HHHHHhCCCCC----CCCEEEeeChhhEecccccccccccccccccccccccccCCCCcEEcCCC--------------C
Confidence 57788888888 8999999999999998 4 88888864 4
Q ss_pred CCceeeeEEEEEEcCCCCCCCCCCH---hHHhhhheeEEEeeccchhhHhhhhhc-CCCCccccccCCC--CCCcccccc
Q 012786 234 QKLDFELEMAAVVGPGNELGKPIDV---NEAADHIFGVMLMNDWSARDIQAWEYV-PLGPFLGKSFGTT--LSPWIVTLD 307 (456)
Q Consensus 234 ~~lD~E~ELavVIGk~l~~g~~vs~---eeA~~~I~Gytl~ND~SaRdiQ~~e~~-~lg~~~~Ksfdts--lGPwiVt~d 307 (456)
++|||+|||+||||+ ++++++ ++|++||+||+++||||+||+|.+++. .++|.++|+|||+ +|||++ .+
T Consensus 83 -~~d~E~ELavvIg~~---~~~v~~~t~~ea~~~I~g~~~~nDvt~Rd~q~~~~~~~~~~~~aK~~d~~~p~Gp~V~-~~ 157 (259)
T 1nkq_A 83 -KVHHEIELALIVSKH---LSNVTKMKPEEVYDSISGVALALDLTARNVQDEAKKKGLPWTISKGFDTFMPISAIVS-RE 157 (259)
T ss_dssp -CEEECEEEEEEECSC---BCSCCCCCGGGTGGGEEEEEEEECCEEHHHHHHHHHHTCCSHHHHHSTTCEEBCCCEE-GG
T ss_pred -cccEEEEEEEEECCC---CCCCCcCCHHHHHhhhhEEEEEEeeeHHHhhhhhhhcCCCcceeeccCcCCCcceEEE-Cc
Confidence 699999999999999 888887 999999999999999999999987653 5789999999994 999974 56
Q ss_pred ccCCccCCCCCCCCCCCccccccCC-CceeEEEEEEEeeCCCCCCeEEEecccccccCCHHHHHHHHHHcCcccCCCCEE
Q 012786 308 ALEPFACDSPKQDPQPLPYLAEKIS-KNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLL 386 (456)
Q Consensus 308 el~~~~~~~~~~d~~~~~~l~~~~~-~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~qlIa~l~S~~~tL~pGDvI 386 (456)
++.+.+. +. .++.|+++| ||+++|++++++|+|++.++|+|+ |++++|+|||||
T Consensus 158 ~~~d~~~----------------dl~~~l~l~l~v--------NGe~~q~g~t~~m~~~~~~Lia~l-S~~~tL~pGDvI 212 (259)
T 1nkq_A 158 KFSSYKS----------------NLQDIFRVKCSV--------NGQLRQDGGTNLMLHPLHKILQHI-STMISLEPGDII 212 (259)
T ss_dssp GGGGGTT----------------CCTTTEEEEEEE--------TTEEEEEEEGGGBSSCHHHHHHHH-HTTSCBCTTCEE
T ss_pred cccCccc----------------ccccceEEEEEE--------CCEEEEEEcHHHcCCCHHHHHHHH-hCCCCcCCCCEE
Confidence 6653110 12 568888888 999999999999999999999998 899999999999
Q ss_pred EcCCCCCCcC
Q 012786 387 GTGTISGPEP 396 (456)
Q Consensus 387 ~TGTp~Gvg~ 396 (456)
+||||+|+++
T Consensus 213 ~TGTp~Gvg~ 222 (259)
T 1nkq_A 213 LTGTPAGVGE 222 (259)
T ss_dssp ECCCCSCCEE
T ss_pred EeCCCCCcEe
Confidence 9999998754
No 14
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Probab=100.00 E-value=7.2e-42 Score=357.43 Aligned_cols=195 Identities=19% Similarity=0.175 Sum_probs=164.5
Q ss_pred ccccccccHHHHHhhchhccCCCCCCCcchhhhhhhcccccceeeeehhhhhhhhhhhccccCCCCCCccEEEeCCCCce
Q 012786 127 DYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIFHLQVYRVVPYFRFHLPIAYHGRASSV 206 (456)
Q Consensus 127 ~~~d~~~~~~H~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~P~~f~k~~ssv 206 (456)
-++.+.||.+|+++++..+.. + .+++.| +.|++|+|+++++
T Consensus 5 i~cvg~Ny~~H~~e~~~~~~~-----~------------------------------~~~~~p----~~P~~f~k~~~~~ 45 (429)
T 1gtt_A 5 IFAVALNHRSQLDAWQEAFQQ-----S------------------------------PYKAPP----KTAVWFIKPRNTV 45 (429)
T ss_dssp EEEEESCBHHHHHHHTTGGGS-----T------------------------------TTCSCC----SSCEEEEECGGGE
T ss_pred EEEEechHHHHHHHhhccccc-----c------------------------------ccCCCC----CCCEEEEcCcceE
Confidence 356788899999998754221 0 112344 7899999999999
Q ss_pred eeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCCCHhHHhhhheeEEEeeccchhhHhhhhhcC
Q 012786 207 VISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVP 286 (456)
Q Consensus 207 ~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~vs~eeA~~~I~Gytl~ND~SaRdiQ~~e~~~ 286 (456)
+++|++|.+|.. ++ +|||+|||+||||+ |+++++++|++||+||+++||||+||+|..
T Consensus 46 ~~~g~~i~~p~~--------------~~-~~~E~Elavvig~~---~~~v~~~~a~~~i~gy~~~nD~s~Rd~~~~---- 103 (429)
T 1gtt_A 46 IGCGEPIPFPQG--------------EK-VLSGATVALIVGKT---ATKVREEDAAEYIAGYALANDVSLPEESFY---- 103 (429)
T ss_dssp ECTTCCEEECTT--------------CC-EECCEEEEEEECSC---BSSCCGGGGGGGEEEEEEEECCBSCCCCSS----
T ss_pred EcCCCeeecCCC--------------CC-ccEEEEEEEEECCC---CCCCCHHHHHhHhhEEEEEEEeeehhhhcc----
Confidence 999999999975 56 99999999999999 999999999999999999999999997643
Q ss_pred CCCccccccCCC--CCCccccccccCCccCCCCCCCCCCCccccccCCCceeEEEEEEEeeCCCCCCeEEEecccccccC
Q 012786 287 LGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYW 364 (456)
Q Consensus 287 lg~~~~Ksfdts--lGPwiVt~del~~~~~~~~~~d~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~ 364 (456)
.+|.++|+||++ +||| +++.+ +.++.|+++| ||+++|++++++|+|
T Consensus 104 ~~~~~aK~fd~~~~lGp~----~~~~d--------------------~~~l~i~~~v--------NGe~~q~g~t~~mi~ 151 (429)
T 1gtt_A 104 RPAIKAKCRDGFCPIGET----VALSN--------------------VDNLTIYTEI--------NGRPADHWNTADLQR 151 (429)
T ss_dssp SCCHHHHCSTTCEEBCCC----BCCSC--------------------CTTCEEEEEE--------TTEEEEEEEGGGBSS
T ss_pred CCccccCCCCCCEEECCh----hhcCC--------------------ccccEEEEEE--------CCEEEEeCCHHHhcC
Confidence 368999999996 9999 45543 3568899998 999999999999999
Q ss_pred CHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCcEEEEEecCccceec
Q 012786 365 TLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL 415 (456)
Q Consensus 365 s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~G~~~l~~ 415 (456)
+++++|+|+ |++++|+|||||+||||+|++.+++||.+|++++|++.++.
T Consensus 152 ~~~~li~~l-s~~~tL~~GDvI~TGTp~g~~~l~~GD~v~~~i~glG~l~~ 201 (429)
T 1gtt_A 152 NAAQLLSAL-SEFATLNPGDAILLGTPQARVEIQPGDRVRVLAEGFPPLEN 201 (429)
T ss_dssp CHHHHHHHH-HTTSCBCTTCEEECCCCSCCCEECTTCEEEEEETTSCCEEE
T ss_pred CHHHHHHHH-hcCCCcCCCCEEEEeccCcceecCCCCEEEEEECCcceeEE
Confidence 999999998 89999999999999999998776666666666666665543
No 15
>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A
Probab=100.00 E-value=6.1e-36 Score=294.65 Aligned_cols=189 Identities=13% Similarity=0.089 Sum_probs=154.3
Q ss_pred hhhhhhhhccccCCCCCCccEEEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCC
Q 012786 177 YSIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPI 256 (456)
Q Consensus 177 ~~~~~~~~~~~~p~~~~~~P~~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~v 256 (456)
|.+|.+|++.+.| ..|.+| +++++++|++|.+|.. .++|||+||||||||+++ |+++
T Consensus 66 ~~~~~~~~g~~~P----~~~~l~---~~~~~~~g~~i~~p~~---------------~~~~~E~ELa~vig~~l~-~~~v 122 (267)
T 2eb4_A 66 SKAMQASSQISEP----DYGALL---DDMFFHDGSDIPTDRF---------------IVPRIEVELAFVLAKPLR-GPNC 122 (267)
T ss_dssp HHHHCSSCCCCSC----EEEEEE---GGGEECTTEEECGGGC---------------SSCEEEEEEEEEESSCBC-CSSC
T ss_pred CHHHHHHhCCCCC----cEEEEe---chheecCCCeecCCcc---------------CcccEeeEEEEEECCCCC-CCCC
Confidence 4567788877555 445444 6799999999998853 368999999999999976 7899
Q ss_pred CHhHHhhhheeEEEeeccchhhHhhhhh-----cCCCCccccc-cCC--CCCCccccccccCCccCCCCCCCCCCCcccc
Q 012786 257 DVNEAADHIFGVMLMNDWSARDIQAWEY-----VPLGPFLGKS-FGT--TLSPWIVTLDALEPFACDSPKQDPQPLPYLA 328 (456)
Q Consensus 257 s~eeA~~~I~Gytl~ND~SaRdiQ~~e~-----~~lg~~~~Ks-fdt--slGPwiVt~del~~~~~~~~~~d~~~~~~l~ 328 (456)
++++|++||+||+++||++.|++|.|.. ..+.|..+|+ |++ ++|||+++.++++
T Consensus 123 t~~~a~~~v~g~~~~~ei~d~r~~~~~~~~~~~~~~~~~~Ad~~~~~~~~lGp~~v~~~~~d------------------ 184 (267)
T 2eb4_A 123 TLFDVYNATDYVIPALELIDARCHNIDPETQRPRKVFDTISDNAANAGVILGGRPIKPDELD------------------ 184 (267)
T ss_dssp CHHHHHHHEEEEEEEEEEECCSBCCC------CCHHHHHHHTGGGEEEEEECSCCBCTTSSC------------------
T ss_pred CHHHHHHhhceEEEEEEeecccccccccccccccCccceeecccccccEEECCCcCCcccCC------------------
Confidence 9999999999999999999988887764 1233455564 445 3999999988764
Q ss_pred ccCCCceeEEEEEEEeeCCCCCCeEEEecccccccCCHHHHHHHHHHc-----CcccCCCCEEEcCCCCCCcCCCCCcEE
Q 012786 329 EKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTIN-----GCNLRSGDLLGTGTISGPEPESLGCLL 403 (456)
Q Consensus 329 ~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~qlIa~l~S~-----~~tL~pGDvI~TGTp~Gvg~~~~Gd~l 403 (456)
+.++.++|++ ||+++|++++++|+|++.++|+|+ |+ +++|+|||||+||||.|+
T Consensus 185 ---~~~l~~~l~v--------NGe~~q~g~t~~ml~~p~~~i~~l-s~~l~~~g~tL~~GDvI~TGT~~g~--------- 243 (267)
T 2eb4_A 185 ---LRWISALMYR--------NGVIEETGVAAGVLNHPANGVAWL-ANKLAPYDVQLEAGQIILGGSFTRP--------- 243 (267)
T ss_dssp ---GGGCEEEEEE--------TTEEEEEEEGGGTTTSTTHHHHHH-HHHHGGGTCCBCTTCEEECCCSSCC---------
T ss_pred ---hhhCeEEEEE--------CCEEEEEecHHhcccCHHHHHHHH-HHHHHHcCCCCCCCCEEECCCCCCC---------
Confidence 2678899999 999999999999999999999998 45 559999999999999874
Q ss_pred EEEecCccceecCCCCCCCCCCCCEEEEEEEEeCCCceeeeeceeeEEe
Q 012786 404 ELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIV 452 (456)
Q Consensus 404 E~~~~G~~~l~~~~~~~~fL~~GD~V~~~~~~~~~~~~~g~G~~~~~v~ 452 (456)
.+|++||+|+++ ++ |+|++++++.
T Consensus 244 -----------------~~l~~GD~v~~~--i~------glG~l~~~~~ 267 (267)
T 2eb4_A 244 -----------------VPARKGDTFHVD--YG------NMGSISCRFV 267 (267)
T ss_dssp -----------------EECCTTCEEEEE--CG------GGCEEEEEEC
T ss_pred -----------------EECCCCCEEEEE--Ec------CCCeEEEEEC
Confidence 468999999888 46 8999998873
No 16
>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic hydrocarbons catabolism; 2.80A {Escherichia coli} PDB: 1sv6_A
Probab=100.00 E-value=2.6e-35 Score=290.67 Aligned_cols=187 Identities=14% Similarity=0.096 Sum_probs=156.6
Q ss_pred hhhhhhhhccccCCCCCCccEEEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCC
Q 012786 177 YSIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPI 256 (456)
Q Consensus 177 ~~~~~~~~~~~~p~~~~~~P~~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~v 256 (456)
|.+|.+|++.+.| ..|.+|.| +++++|++|.+|.. .++|||+||||||||+++ |+++
T Consensus 66 ~~~h~~e~g~~~P----~~~~lf~~---~~~~~g~~i~~p~~---------------~~~~~E~ELa~vig~~~~-g~~v 122 (270)
T 2wqt_A 66 HPKVQQQLGVDQP----DFGTLFAD---MCYGDNEIIPFSRV---------------LQPRIEAEIALVLNRDLP-ATDI 122 (270)
T ss_dssp SHHHHHTTTCSSC----EEEEEEGG---GEEETTEEECGGGS---------------SSCEEEEEEEEEESSCBC-CTTC
T ss_pred CHHHHHHhCCCCC----CEEEEech---heeCCCCeeecCcc---------------CccceeeEEEEEECCCCC-CCCC
Confidence 4578889998888 88999987 79999999998853 479999999999999976 7899
Q ss_pred CHhHHhh---hheeEEEeeccchhhHhhhhhcCCCCccccccCC---CCCCccccccccCCccCCCCCCCCCCCcccccc
Q 012786 257 DVNEAAD---HIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGT---TLSPWIVTLDALEPFACDSPKQDPQPLPYLAEK 330 (456)
Q Consensus 257 s~eeA~~---~I~Gytl~ND~SaRdiQ~~e~~~lg~~~~Ksfdt---slGPwiVt~del~~~~~~~~~~d~~~~~~l~~~ 330 (456)
++++|++ ||+||+.+||++.||+|... ....+||+.+ ++|||+++.++++
T Consensus 123 t~~~a~~ai~~v~~~~ei~D~~~~~~~~k~----~d~~aDn~s~~~~~lGp~~v~~~~~d-------------------- 178 (270)
T 2wqt_A 123 TFDELYNAIEWVLPALEVVGSRIRDWSIQF----VDTVADNASCGVYVIGGPAQRPAGLD-------------------- 178 (270)
T ss_dssp CHHHHHTTEEEEEEEEEEECCSBGGGCCCH----HHHHHTGGGCCEEEECBCCBCSTTCC--------------------
T ss_pred CHHHHHHhhCeEEEEEEEEcCcccccCCCh----hcEEccCccCCCEeECcCcCCcccCC--------------------
Confidence 9999997 88999999999999987211 1122333333 5999999988874
Q ss_pred CCCceeEEEEEEEeeCCCCCCeEEEecccccccCCHHHHHHHHHHc-----CcccCCCCEEEcCCCCCCcCCCCCcEEEE
Q 012786 331 ISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTIN-----GCNLRSGDLLGTGTISGPEPESLGCLLEL 405 (456)
Q Consensus 331 ~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~qlIa~l~S~-----~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~ 405 (456)
+.++.++|++ ||+++|++++++|+|++.++|+|+ |+ +++|+|||||+||||.|+
T Consensus 179 -~~~l~i~l~v--------NGe~~q~g~~~~ml~~p~~~v~~l-s~~l~~~g~tL~~GdvI~TGT~~g~----------- 237 (270)
T 2wqt_A 179 -LKNCAMKMTR--------NNEEVSSGRGSECLGHPLNAAVWL-ARKMASLGEPLRTGDIILTGALGPM----------- 237 (270)
T ss_dssp -CSSCEEEEEE--------TTEEEEEEEGGGTTTSHHHHHHHH-HHHHHHTTCCBCTTCEEEEEESSCC-----------
T ss_pred -hhhCeEEEEE--------CCEEEEEEchhhccCCHHHHHHHH-HHHHHhcCCCcCCCCEEEcCCCCCC-----------
Confidence 2568899998 999999999999999999999999 55 899999999999999864
Q ss_pred EecCccceecCCCCCCCCCCCCEEEEEEEEeCCCceeeeeceeeEEeeC
Q 012786 406 TWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 454 (456)
Q Consensus 406 ~~~G~~~l~~~~~~~~fL~~GD~V~~~~~~~~~~~~~g~G~~~~~v~p~ 454 (456)
.+|++||+|+++ ++ |+|+++|+|+..
T Consensus 238 ---------------~~l~~GD~v~~~--i~------glG~l~~~v~~~ 263 (270)
T 2wqt_A 238 ---------------VAVNAGDRFEAH--IE------GIGSVAATFSSA 263 (270)
T ss_dssp ---------------EECCTTCEEEEE--ET------TTEEEEEEECC-
T ss_pred ---------------eeCCCCCEEEEE--Ec------CCceEEEEEEeC
Confidence 468999999888 45 899999998754
No 17
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=60.31 E-value=8.4 Score=29.87 Aligned_cols=64 Identities=17% Similarity=0.286 Sum_probs=37.2
Q ss_pred cccCCCCEEEcCCCCCCcCCCCCcEEEEE--ecCccceec-CCCCCCCCCCCCEEEEEEE-EeCCCceeee
Q 012786 378 CNLRSGDLLGTGTISGPEPESLGCLLELT--WNGQKPLSL-DGFTRKFLEDGDEVTFTGF-CKGNGYTVGF 444 (456)
Q Consensus 378 ~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~--~~G~~~l~~-~~~~~~fL~~GD~V~~~~~-~~~~~~~~g~ 444 (456)
|.++.||+ .+|+..++.. -|..+++. ++|.-.++- ....-..++.||.|.+.+. ++.+.++|.|
T Consensus 1 m~~~~G~i-v~G~V~~v~~--~G~fV~l~~~~~Gllh~sel~~~~~~~~~~Gd~V~v~V~~vd~~~~~i~l 68 (80)
T 2k52_A 1 MDVEPGKF-YKGVVTRIEK--YGAFINLNEQVRGLLRPRDMISLRLENLNVGDEIIVQAIDVRPEKREIDF 68 (80)
T ss_dssp CCCCTTCE-EEEEEEEEET--TEEEEEEETTEEEEECGGGCSSCCGGGCCTTCEEEEEEEEEETTTTEEEE
T ss_pred CCCCCCCE-EEEEEEEEeC--CEEEEEECCCCEEEEEHHHCCcccceeeCCCCEEEEEEEEEECCCCEEEE
Confidence 46788997 7888887755 57777774 222222211 1101136999999999862 2333344443
No 18
>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural genomics, PSI-2, protein structure initiative; HET: TAR; 2.10A {Oleispira antarctica} PDB: 3v77_A*
Probab=51.24 E-value=13 Score=34.94 Aligned_cols=13 Identities=31% Similarity=0.207 Sum_probs=11.2
Q ss_pred CCCCCCCEEEEEE
Q 012786 421 KFLEDGDEVTFTG 433 (456)
Q Consensus 421 ~fL~~GD~V~~~~ 433 (456)
..|++||+|++++
T Consensus 197 g~l~~GD~v~~~i 209 (224)
T 3l53_A 197 GPLEVGDSLSAKL 209 (224)
T ss_dssp EECCTTCEEEEEE
T ss_pred EEcCCCCEEEEEE
Confidence 4699999999985
No 19
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=47.32 E-value=46 Score=25.56 Aligned_cols=19 Identities=0% Similarity=-0.132 Sum_probs=14.2
Q ss_pred CCeEEEecccccccCCHHHHHHHH
Q 012786 350 DSCVVTRSNFKYLYWTLTQQLAHH 373 (456)
Q Consensus 350 NGe~~q~~~t~~m~~s~~qlIa~l 373 (456)
||+.++- .. -++.++++.+
T Consensus 6 NG~~~e~-~~----~Tl~~LL~~l 24 (73)
T 2kl0_A 6 NGEQREV-QS----ASVAALMTEL 24 (73)
T ss_dssp TTEEECC-CC----SBHHHHHHHT
T ss_pred CCEEEEc-CC----CcHHHHHHHc
Confidence 9998764 21 5788999886
No 20
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=40.09 E-value=25 Score=28.77 Aligned_cols=64 Identities=20% Similarity=0.205 Sum_probs=39.5
Q ss_pred cccCCCCEEEcCCCCCCcCCCCCcEEEEE--ecCccceec-CC----CCCCCCCCCCEEEEEEE-EeCCCceeee
Q 012786 378 CNLRSGDLLGTGTISGPEPESLGCLLELT--WNGQKPLSL-DG----FTRKFLEDGDEVTFTGF-CKGNGYTVGF 444 (456)
Q Consensus 378 ~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~--~~G~~~l~~-~~----~~~~fL~~GD~V~~~~~-~~~~~~~~g~ 444 (456)
..+..||+ .+|++.++.. .|..+++. +.|.-+++- .. .+...++.||+|.+.+. ++.++.+|.|
T Consensus 27 ~~~~~G~i-v~G~V~~v~~--~G~fV~l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd~~~~ki~L 98 (109)
T 2khj_A 27 ALNKKGAI-VTGKVTAVDA--KGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISL 98 (109)
T ss_dssp TTCCSSSE-EEEEEEEECS--SCEEEECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEETTTTEEEE
T ss_pred hcCCCCCE-EEEEEEEEEC--CeEEEEECCCCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEECCCCEEEE
Confidence 47899997 6789887755 47777764 333322221 11 23457999999998862 2444555544
No 21
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=38.33 E-value=35 Score=27.35 Aligned_cols=28 Identities=18% Similarity=-0.027 Sum_probs=17.1
Q ss_pred eeEEEEEEEeeCCCCCCeEEEecccccccCCHHHHHHHH
Q 012786 335 YDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHH 373 (456)
Q Consensus 335 l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~qlIa~l 373 (456)
..|++.| ||+.++-... --++.++++.+
T Consensus 19 ~~M~I~v--------NGe~~el~~~---~~Tv~dLL~~L 46 (87)
T 1tyg_B 19 GRHMLQL--------NGKDVKWKKD---TGTIQDLLASY 46 (87)
T ss_dssp ---CEEE--------TTEEECCSSS---CCBHHHHHHHT
T ss_pred cceEEEE--------CCEEEECCCC---CCcHHHHHHHh
Confidence 3455666 9998774321 13788999987
No 22
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=38.19 E-value=20 Score=29.93 Aligned_cols=66 Identities=27% Similarity=0.314 Sum_probs=41.7
Q ss_pred CcccCCCCEEEcCCCCCCcCCCCCcEEEEEecCccceec--C--C-----CCCCCCCCCCEEEEEEE-EeCCCceeeee
Q 012786 377 GCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL--D--G-----FTRKFLEDGDEVTFTGF-CKGNGYTVGFG 445 (456)
Q Consensus 377 ~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~G~~~l~~--~--~-----~~~~fL~~GD~V~~~~~-~~~~~~~~g~G 445 (456)
...|+.||+ ..|+..++.. -|..+++...+.+-+-. . . .+...++.||+|.+.+. ++.+.++|.|-
T Consensus 16 ~~~l~~G~i-~~G~V~~v~~--fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i~Ls 91 (119)
T 1wi5_A 16 AEALKPGML-LTGTVSSLED--HGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLS 91 (119)
T ss_dssp TTTCCTTCE-EEEEEEEECS--SEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSCEEEEE
T ss_pred HhcCCCCCE-EEEEEEEEeC--ceEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEeCCCCEEEEE
Confidence 346889997 4788887754 58888775334332322 1 0 34678999999999862 23344555554
No 23
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=34.55 E-value=25 Score=29.42 Aligned_cols=61 Identities=25% Similarity=0.163 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCcEEEEEecCccceecCCCCCCCCCCCCEEEE
Q 012786 364 WTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTF 431 (456)
Q Consensus 364 ~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~G~~~l~~~~~~~~fL~~GD~V~~ 431 (456)
+++.++|.|+..+...+ ..+++..+-+ ..+.+| +-+-++|.. .++-+.-..-|++||+|.+
T Consensus 35 ~TV~dLl~~L~~~~~~~-r~~lf~~~g~---~~lrpg--IlVLVNg~d-~e~l~gldt~L~dgD~V~f 95 (110)
T 2k9x_A 35 TNLNGLVQLLKTNYVKE-RPDLLVDQTG---QTLRPG--ILVLVNSCD-AEVVGGMDYVLNDGDTVEF 95 (110)
T ss_dssp CCHHHHHHHHTTTTCCS-CHHHHBCSSS---SSBCTT--EEEEESSSB-HHHHTSSCCCCCSSCEEEE
T ss_pred ccHHHHHHHHHHHcccc-chhhEecCCC---cccCCC--eEEEECCee-eeccCCcccCCCCcCEEEE
Confidence 79999999995444455 3455433211 124456 334445522 2221123466999999877
No 24
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=31.50 E-value=30 Score=25.71 Aligned_cols=20 Identities=10% Similarity=0.004 Sum_probs=14.7
Q ss_pred CCeEEEecccccccCCHHHHHHHH
Q 012786 350 DSCVVTRSNFKYLYWTLTQQLAHH 373 (456)
Q Consensus 350 NGe~~q~~~t~~m~~s~~qlIa~l 373 (456)
||+.++-... -++.++++++
T Consensus 6 Ng~~~~~~~~----~tv~~ll~~l 25 (66)
T 1f0z_A 6 NDQAMQCAAG----QTVHELLEQL 25 (66)
T ss_dssp SSCEECCCTT----CCHHHHHHHH
T ss_pred CCEEEEcCCC----CcHHHHHHHc
Confidence 9988764322 3899999997
No 25
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.18 E-value=61 Score=27.22 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=14.1
Q ss_pred CCCCCCCCCEEEEEEE
Q 012786 419 TRKFLEDGDEVTFTGF 434 (456)
Q Consensus 419 ~~~fL~~GD~V~~~~~ 434 (456)
...|+++||.|.++-+
T Consensus 50 k~IwI~~GD~VlVe~~ 65 (111)
T 2dgy_A 50 KNIWIKRGDFLIVDPI 65 (111)
T ss_dssp SCCCCCSSCEEEEEEC
T ss_pred ccEEEcCCCEEEEEec
Confidence 5899999999999954
No 26
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=29.95 E-value=32 Score=31.27 Aligned_cols=63 Identities=13% Similarity=0.093 Sum_probs=36.5
Q ss_pred cCCCCEEEcCCCCCCcCCCCCcEEEEE----ecCccceec--C---CCCCCCCCCCCEEEEEE-EEeCCCceeeee
Q 012786 380 LRSGDLLGTGTISGPEPESLGCLLELT----WNGQKPLSL--D---GFTRKFLEDGDEVTFTG-FCKGNGYTVGFG 445 (456)
Q Consensus 380 L~pGDvI~TGTp~Gvg~~~~Gd~lE~~----~~G~~~l~~--~---~~~~~fL~~GD~V~~~~-~~~~~~~~~g~G 445 (456)
++.||++ .|+..++.. -|+.+++. ++|.-.++- . ..+...++.||+|.+.+ .++.+.++|.|+
T Consensus 13 p~~G~iv-~G~V~~I~~--fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LS 85 (182)
T 1kl9_A 13 PEVEDVV-MVNVRSIAE--MGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLS 85 (182)
T ss_dssp CCTTCEE-EEEEEEECS--SEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEE
T ss_pred CCCCCEE-EEEEEEEec--cEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEE
Confidence 4789975 889888765 58888882 444333322 1 12567899999999986 234445566664
No 27
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=28.23 E-value=53 Score=25.55 Aligned_cols=22 Identities=14% Similarity=0.033 Sum_probs=14.5
Q ss_pred CCeEEEecccccccCCHHHHHHHH
Q 012786 350 DSCVVTRSNFKYLYWTLTQQLAHH 373 (456)
Q Consensus 350 NGe~~q~~~t~~m~~s~~qlIa~l 373 (456)
||+.++-..-. --++.++++.+
T Consensus 6 NGe~~e~~~~~--~~Tl~~LL~~l 27 (78)
T 2k5p_A 6 NGKPSTVDGAE--SLNVTELLSAL 27 (78)
T ss_dssp TTEEEECSSCS--CEEHHHHHHHH
T ss_pred CCEEEEcCCCC--CCcHHHHHHHc
Confidence 99988743000 14788999987
No 28
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=27.50 E-value=41 Score=28.56 Aligned_cols=64 Identities=22% Similarity=0.351 Sum_probs=38.3
Q ss_pred cccCCCCEEEcCCCCCCcCCCCCcEEEEE--ecCccceec--CC---CCCCCCCCCCEEEEEEE-EeCCCceeee
Q 012786 378 CNLRSGDLLGTGTISGPEPESLGCLLELT--WNGQKPLSL--DG---FTRKFLEDGDEVTFTGF-CKGNGYTVGF 444 (456)
Q Consensus 378 ~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~--~~G~~~l~~--~~---~~~~fL~~GD~V~~~~~-~~~~~~~~g~ 444 (456)
..+..||+ ..|++.++.. -|..+++. +.|.-.++- ++ .....++.||.|.+.+. ++...++|.|
T Consensus 3 ~~~~vG~i-v~G~V~~i~~--~G~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~L 74 (130)
T 2k4k_A 3 AKFEVGSV-YTGKVTGLQA--YGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISL 74 (130)
T ss_dssp CCCCTTCE-EEEEEEEEET--TEEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEE
T ss_pred CcCCCCCE-EEEEEEEEeC--CeEEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEE
Confidence 35788995 5788888755 47777773 233222211 11 13467999999999862 2333445544
No 29
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=22.80 E-value=48 Score=26.24 Aligned_cols=16 Identities=13% Similarity=-0.155 Sum_probs=13.8
Q ss_pred CCCCCCCCCEEEEEEE
Q 012786 419 TRKFLEDGDEVTFTGF 434 (456)
Q Consensus 419 ~~~fL~~GD~V~~~~~ 434 (456)
...|+.+||.|.++.|
T Consensus 50 ~~I~Il~GD~V~ve~~ 65 (79)
T 3i4o_A 50 HYIRILPEDRVVVELS 65 (79)
T ss_dssp TTCCCCTTCEEEEEEE
T ss_pred CCccCCCCCEEEEEEC
Confidence 4678999999999975
No 30
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=22.70 E-value=1.3e+02 Score=28.04 Aligned_cols=67 Identities=22% Similarity=0.099 Sum_probs=37.2
Q ss_pred cCCCCEEEcCCC-CCCcCCCCCcEEEEEecCcc-----ceec-CCCCCCCCCCCCEEEEEEE-EeCCCceeeeec
Q 012786 380 LRSGDLLGTGTI-SGPEPESLGCLLELTWNGQK-----PLSL-DGFTRKFLEDGDEVTFTGF-CKGNGYTVGFGT 446 (456)
Q Consensus 380 L~pGDvI~TGTp-~Gvg~~~~Gd~lE~~~~G~~-----~l~~-~~~~~~fL~~GD~V~~~~~-~~~~~~~~g~G~ 446 (456)
.-|||+|.+... .|.|....+..+..+..|.- .+.+ .-..+...+.||+|+-++. +..++..|.+|.
T Consensus 5 V~PGd~l~~~~~~~G~Gty~~~g~i~as~~G~v~~~~~~v~V~p~~~~y~p~~GDiV~G~V~~v~~~~a~V~I~~ 79 (229)
T 2ba0_A 5 VLPGDLLSTNPRAAGYGTYVEGGKVYAKIIGLFDQTETHVRVIPLKGRYTPSVGDVVIGIIREVAANGWAVDIYS 79 (229)
T ss_dssp ECTTCEEESCTTSBCTTEEEETTEEEECSSEEEEECSSCEEEEECSSSCCCCTTCEEEEEEEEECSSEEEEECSS
T ss_pred EcCCCCcccCCeEecCCEEEeCCEEEEEEEEEEEEeCCEEEEEeCCCcccCCCCCEEEEEEEEEeCCeEEEEeCC
Confidence 569999986542 24333333344455555521 1223 1223456899999976652 235666677764
No 31
>3esi_A Uncharacterized protein; protein from erwinia carotovora subsp. atroseptica (pectobacterium atrosepticum), structural genomics; 2.50A {Pectobacterium atrosepticum}
Probab=21.92 E-value=84 Score=26.91 Aligned_cols=26 Identities=8% Similarity=0.169 Sum_probs=18.6
Q ss_pred CCCCCCCCEEEEEEEEeCCCceeeee
Q 012786 420 RKFLEDGDEVTFTGFCKGNGYTVGFG 445 (456)
Q Consensus 420 ~~fL~~GD~V~~~~~~~~~~~~~g~G 445 (456)
+..+.|||++++++.......+++|-
T Consensus 75 ~~~V~PGD~l~l~v~~~~~~~~l~F~ 100 (129)
T 3esi_A 75 QQPILPGKTLRLVLIWHAGKQSLTFS 100 (129)
T ss_dssp CSCCCTTCEEEEEEEEETTTTEEEEE
T ss_pred CcccCCCCEEEEEEEEEecCCcEEEE
Confidence 46688999999998776655555553
No 32
>1s4k_A Putative cytoplasmic protein YDIL; structural genomics, MCSG, PSI, PROT structure initiative; 1.90A {Salmonella typhimurium} SCOP: a.35.1.6
Probab=20.32 E-value=48 Score=28.38 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=19.9
Q ss_pred CCHhHHhhhheeEEEeeccchhhHhhhhh
Q 012786 256 IDVNEAADHIFGVMLMNDWSARDIQAWEY 284 (456)
Q Consensus 256 vs~eeA~~~I~Gytl~ND~SaRdiQ~~e~ 284 (456)
.+.+||..+|. +|+|.|.||.||.
T Consensus 17 Lt~~EaA~~i~-----~~vs~rtWQqWE~ 40 (120)
T 1s4k_A 17 MTIEECTIYIT-----QDNNSATWQRWEA 40 (120)
T ss_dssp CCHHHHHHHTS-----SSCCHHHHHHHHH
T ss_pred CCHHHHHHHHh-----ccCCHHHHHHHHC
Confidence 67788877775 5899999999995
Done!