RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 012786
(456 letters)
>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A
{Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A
2hzy_A* 1qco_A 1qqj_A
Length = 421
Score = 501 bits (1292), Expect = e-177
Identities = 234/454 (51%), Positives = 290/454 (63%), Gaps = 38/454 (8%)
Query: 2 ALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILK 61
SFI V DS FPIQNLPYGVF + R GVAIG+ +LDLS I + K
Sbjct: 1 GSMSFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKHLFTGPA-LSK 59
Query: 62 DSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLL 121
F + LN F+ LG+ AWKEAR LQ LLS+++A LRD+ LRQ++ M L
Sbjct: 60 HQHVFDETTLNNFMGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHL 119
Query: 122 PMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIFH 181
P IGDYTDF+SS HA N G +FRG NA+ NW
Sbjct: 120 PATIGDYTDFYSSRQHATNVGIMFRGKENALLPNWL------------------------ 155
Query: 182 LQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELE 241
HLP+ YHGRASS+V+SGT I RP GQ P + PP +G + LD ELE
Sbjct: 156 ------------HLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELE 203
Query: 242 MAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSP 301
MA VGPGN G+PI +++A +HIFG++LMNDWSARDIQ WEYVPLGPFLGKSFGTT+SP
Sbjct: 204 MAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISP 263
Query: 302 WIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKY 361
W+V +DAL PF +PKQDP+PLPYL +DI+L V +K G + + RSNFK+
Sbjct: 264 WVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKH 323
Query: 362 LYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTR 420
+YWT+ QQL HH++NGCNLR GDLL +GTISG +PES G +LEL+W G K + + G TR
Sbjct: 324 MYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGSMLELSWKGTKAIDVGQGQTR 383
Query: 421 KFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 454
FL DGDEV TG C+G+GY VGFG C+GK++P+
Sbjct: 384 TFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 417
>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics,
PSI-2, protein structure initiative; 1.90A
{Sinorhizobium meliloti}
Length = 359
Score = 121 bits (305), Expect = 6e-31
Identities = 49/268 (18%), Positives = 82/268 (30%), Gaps = 53/268 (19%)
Query: 196 PIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKP 255
P+ Y G + S + I+ + +D E E A +V
Sbjct: 131 PLIYQGGSDSFLGPRDPILMADD--------------AWGIDMEGEAAVIVDDV---PMG 173
Query: 256 IDVNEAADHIFGVMLMNDWSARDIQAWEYVP-LGPFLGKSFGTTLSPWIVTLDALEPFAC 314
++EA I VML+ND S R + E G + K + SP VT + L
Sbjct: 174 ATLDEAKAAIRLVMLVNDVSLRGLIPGELAKGFGFYQSKPS-SAFSPVAVTPEELG---- 228
Query: 315 DSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHT 374
+ + L + + G+ + + + Q + H
Sbjct: 229 -----EAW----------DGGKLHLPLHVDLNGEPFGRANAGID---MTFDFPQLIVHAA 270
Query: 375 INGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRK---------FLED 425
L +G ++G+GT+S G + G ++ FL+
Sbjct: 271 -RTRPLSAGTIIGSGTVSNKLEGGPGRPVSEGGAGYSCIAELRMIETIEGGAPKTQFLKF 329
Query: 426 GDEVTFTGFCKGNGYTVGFGTCSGKIVP 453
GD V K FG K+
Sbjct: 330 GDVVRIE--MKDRTGHSIFGAIEQKVGK 355
>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc
genomics, seattle structural genomics center for
infectious isomerase; 1.95A {Mycobacterium abscessus}
Length = 329
Score = 87.0 bits (216), Expect = 4e-19
Identities = 46/235 (19%), Positives = 78/235 (33%), Gaps = 72/235 (30%)
Query: 203 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 262
+S+ ++ PR S LD+E+E+A V+G G I+ ++A
Sbjct: 136 PTSISGPRDAVIAPRT--------------SHALDYEIEIAVVIGKP---GYRIERSQAI 178
Query: 263 DHIFGVMLMNDWSARDIQAWEYVPLGP-----FLGKSFGTT--LSPWIVTLDALEPFACD 315
H+ G ML ND +ARD+ P GK + T PW+ T +
Sbjct: 179 KHVAGYMLANDITARDVALPFGFGGSPLQAQVVRGKGYPTFCPTGPWLFTTGSDT----- 233
Query: 316 SPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTI 375
+ D L + G+ + + + + + +
Sbjct: 234 ----TFETF-----------DFELRIN----GE----LRQSGSTVDMTLGFAEVVETVS- 269
Query: 376 NGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVT 430
LR+GD++ TGT P G P ++L GD +
Sbjct: 270 ATIALRAGDIILTGT-----PGGCGF-------QFDP-------PRYLRPGDVIE 305
>3rr6_A Putative uncharacterized protein; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A
Length = 265
Score = 72.3 bits (178), Expect = 2e-14
Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 32/115 (27%)
Query: 203 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 262
+S++ G I P + ++ E E+A V+G K + AA
Sbjct: 96 NTSIIGPGLPIQLPPS--------------ATEVHHEGELAIVIG---RPCKDVPAARAA 138
Query: 263 DHIFGVMLMNDWSARDIQA----WEYVPLGPFLGKSFGTT--LSPWIVTLDALEP 311
++I G + ND SARD Q W K T L PWIVT L+P
Sbjct: 139 ENILGYTIGNDVSARDHQRADGQW-------TRAKGHDTFCPLGPWIVT--DLDP 184
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom
initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus
thermophilus}
Length = 246
Score = 72.2 bits (178), Expect = 2e-14
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 23/112 (20%)
Query: 203 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 262
+S++ ++ P+G ++ + +E+E+A VVG K + +A
Sbjct: 75 NTSLLPHKGVVLYPKG--------------ARFVHYEVELAVVVG---RPMKRVRAKDAL 117
Query: 263 DHIFGVMLMNDWSARDIQAWEYVPLGPFL-GKSFGTT--LSPWIVTLDALEP 311
D++ G + ND ARD + P + K T L P++V + +P
Sbjct: 118 DYVLGYTIANDLVARDYVTNTF---RPPIRAKGRDTFLPLGPFLVVEEVEDP 166
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional
isomerase/decarboxylase; lyase, bifunctional enzyme,
multifunctional enzyme decarboxylase; 1.7A {Escherichia
coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Length = 429
Score = 72.6 bits (179), Expect = 5e-14
Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 32/125 (25%)
Query: 203 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 262
+++ VRP + + +E E+ V+G + + + +A
Sbjct: 254 PNTLTGDNQTSVRPNN--------------IEYMHYEAELVVVIG---KQARNVSEADAM 296
Query: 263 DHIFGVMLMNDWSARDIQAWEYVPLGPFL-GKSFGTT--LSPWIVTLDALEPFACDSPKQ 319
D++ G + ND++ RD Y P L KS + IV +A+
Sbjct: 297 DYVAGYTVCNDYAIRDYLENYY---RPNLRVKSRDGLTPMLSTIVPKEAIP--------- 344
Query: 320 DPQPL 324
DP L
Sbjct: 345 DPHNL 349
Score = 66.9 bits (164), Expect = 3e-12
Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 30/110 (27%)
Query: 203 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 262
++V+ G I P+ +K+ +A +VG + + +AA
Sbjct: 42 RNTVIGCGEPIPFPQ---------------GEKVLSGATVALIVG---KTATKVREEDAA 83
Query: 263 DHIFGVMLMNDWSARDIQA---WEYVPLGPFLGKSFGTT--LSPWIVTLD 307
++I G L ND S + K + + +
Sbjct: 84 EYIAGYALANDVSLPEESFYRPA-------IKAKCRDGFCPIGETVALSN 126
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase,
structural GE NPPSFA; 2.20A {Thermus thermophilus}
Length = 264
Score = 70.3 bits (173), Expect = 9e-14
Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 30/112 (26%)
Query: 200 HGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVN 259
G + + P +++L +E E+A VVG + + +
Sbjct: 89 PGNPRDPWGTAEPVPYPFF--------------TEELHYEGELAVVVG---DRMRHVPPE 131
Query: 260 EAADHIFGVMLMNDWSARDIQA----WEYVPLGPFLGKSFGTT--LSPWIVT 305
+A DH+ G + D +ARD+Q W KS L PW+ T
Sbjct: 132 KALDHVLGYTVAVDITARDVQKKDLQW-------VRAKSADKFLPLGPWLET 176
>1saw_A Hypothetical protein FLJ36880; structural genomics,
fumarylacetoacetatehydrolase family, unknown function;
2.20A {Homo sapiens} SCOP: d.177.1.1
Length = 225
Score = 69.5 bits (171), Expect = 9e-14
Identities = 39/219 (17%), Positives = 76/219 (34%), Gaps = 58/219 (26%)
Query: 203 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 262
+++ G+ I+ P ++ L ELE+ V+G + + A
Sbjct: 50 STAYAPEGSPILMPAY--------------TRNLHHELELGVVMGKR---CRAVPEAAAM 92
Query: 263 DHIFGVMLMNDWSARDIQAWEYVPLGPF-LGKSFGTT--LSPWIVTLDALEPFACDSPKQ 319
D++ G L D +ARD+Q P+ L KSF + +S ++
Sbjct: 93 DYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPK----------EKIP 142
Query: 320 DPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAH----HTI 375
DP + L+V + + + +++ +++ T
Sbjct: 143 DPH-----------KLKLWLKV--------NGELRQEGETSSMIFSIPYIISYVSKIIT- 182
Query: 376 NGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLS 414
L GD++ TGT G P +E +G ++
Sbjct: 183 ----LEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMT 217
>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural
genomics, PSI-2, protein structure initiative; HET: TAR;
2.10A {Oleispira antarctica} PDB: 3v77_A*
Length = 224
Score = 67.9 bits (167), Expect = 3e-13
Identities = 36/205 (17%), Positives = 65/205 (31%), Gaps = 70/205 (34%)
Query: 203 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 262
ASS V G P+ + ELE+A ++G + + A
Sbjct: 47 ASSAVPFGPVFSIPKD--------------QGSVHHELEIAILIG---KALSRASTEQVA 89
Query: 263 DHIFGVMLMNDWSARDIQA--------WEYVPLGPFLGKSFGTT--LSPWIVTLDALEPF 312
+ I G+ L D + RD+Q WE KSF L+ ++
Sbjct: 90 ESIAGIGLGLDLTLRDVQDQLKEKGHPWE-------RAKSFDGACPLTEFVAV------- 135
Query: 313 ACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAH 372
+ ++LE + + + + + + +AH
Sbjct: 136 -----NLASEDEWQ-------AIGLTLEK--------NGQFQQQGSSAEMLFPILPLIAH 175
Query: 373 ----HTINGCNLRSGDLLGTGTISG 393
+ L+ GD++ TGT +G
Sbjct: 176 MSEHFS-----LQPGDVILTGTPAG 195
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid,
structural genomics, center for structural genomics O
infectious diseases; 2.01A {Yersinia pestis} PDB: 1nr9_A
Length = 221
Score = 67.5 bits (166), Expect = 4e-13
Identities = 34/205 (16%), Positives = 68/205 (33%), Gaps = 72/205 (35%)
Query: 203 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 262
+++ + P+ + E+E+A ++G K + A
Sbjct: 51 ETALCDIRQPVSIPKD--------------FGSVHHEIELAVLIGTP---LKQASEDRVA 93
Query: 263 DHIFGVMLMNDWSARDIQA--------WEYVPLGPFLGKSFGTT--LSPWIVTLDALEPF 312
I G + D + R++QA WE K+F + +S +I
Sbjct: 94 RAIAGYGVALDLTLRELQAGFKKAGQPWE-------KAKAFDGSCPISGFIPV------- 139
Query: 313 ACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAH 372
+ D Q D+SL + + + + N + + + +++
Sbjct: 140 ---AEFGDAQ-----------QADLSLTI--------NGEIRQQGNTRDMITPIIPLISY 177
Query: 373 ----HTINGCNLRSGDLLGTGTISG 393
T LR+GD++ TGT G
Sbjct: 178 MSRFFT-----LRAGDIVLTGTPQG 197
>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase;
2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X
2q1c_X 2q1d_X 3bqb_A
Length = 293
Score = 68.6 bits (168), Expect = 4e-13
Identities = 43/230 (18%), Positives = 69/230 (30%), Gaps = 79/230 (34%)
Query: 203 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 262
+ V G I S+ E E+A V+ +
Sbjct: 121 PNRCVGHGEAIAVRSD--------------SEWTLPEPELAVVLD-------------SN 153
Query: 263 DHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQD 320
I G +M+D SARD++A PL K + P IVT D ++ +
Sbjct: 154 GKILGYTIMDDVSARDLEAEN--PLYLPQSKIYAGCCAFGPVIVTSDEIK---------N 202
Query: 321 PQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNL 380
P L DI+L++ + N + + ++ + I +
Sbjct: 203 PYSL-----------DITLKIV----REGRVFFEGSVNTNKMRRKI-EEQIQYLIRDNPI 246
Query: 381 RSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVT 430
G +L TGT P G + L+D D V
Sbjct: 247 PDGTILTTGTAIVP----------------------GRDK-GLKDEDIVE 273
>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region;
dimer, PSI, protein structure initiative; 2.20A
{Saccharomyces cerevisiae} SCOP: d.177.1.1
Length = 259
Score = 60.8 bits (148), Expect = 1e-10
Identities = 37/218 (16%), Positives = 66/218 (30%), Gaps = 66/218 (30%)
Query: 203 ASSVVISGTDIVRPRG--------QFAPSGNSPPPFGP--SQKLDFELEMAAVVGPGNEL 252
SS+V + + G +P P K+ E+E+A +V +
Sbjct: 41 TSSIVTPLSSSLVKTTRPANSTFNGLNEDGTNPGPIFIPRGVKVHHEIELALIVS---KH 97
Query: 253 GKPIDVN---EAADHIFGVMLMNDWSARDIQA--------WEYVPLGPFLGKSFGTT--L 299
+ E D I GV L D +AR++Q W + K F T +
Sbjct: 98 LSNVTKMKPEEVYDSISGVALALDLTARNVQDEAKKKGLPWT-------ISKGFDTFMPI 150
Query: 300 SPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNF 359
S + ++ + + + V + +
Sbjct: 151 SAIVSR------------EKFSSY----KSNLQDIFRVKCSV--------NGQLRQDGGT 186
Query: 360 KYLYWTLTQQLAH----HTINGCNLRSGDLLGTGTISG 393
+ L + L H + L GD++ TGT +G
Sbjct: 187 NLMLHPLHKILQHISTMIS-----LEPGDIILTGTPAG 219
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 1e-07
Identities = 101/569 (17%), Positives = 162/569 (28%), Gaps = 220/569 (38%)
Query: 2 ALQSFIEVEPDSHFPIQNL----------PYGVFKP--EPAS----VARPGVAIGEYVLD 45
+L+ + V S F L P F EP + V + +G YV
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK---FLG-YVSS 70
Query: 46 LSEISKAGLFNGPILKDS-----DCFLQPN----------------LNKFLSLGRPAWKE 84
L E SK G F+ +L +C+L+ N L K L + +
Sbjct: 71 LVEPSKVGQFD-QVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK-NYIT 128
Query: 85 ARDMLQKLLSSN-EATLRDNANLRQKSLVPM----GKVEMLLPMEIGD-YT-------DF 131
AR M ++ + L LV + G + E+ D Y D
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE-ELRDLYQTYHVLVGDL 187
Query: 132 FSSMHHAKNCGTIFRGPANAVPA--------NWYVILKSTSKQGIVSVLTLVYYS---IF 180
A+ + R +A W L++ S L + S I
Sbjct: 188 IKFS--AETLSELIRTTLDAEKVFTQGLNILEW---LENPSNTPDKDYLLSIPISCPLIG 242
Query: 181 HLQV--YRVV-------P-YFRFHLP-IAYHGRA--SSVVISGTD--------------- 212
+Q+ Y V P R +L H + ++V I+ TD
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 213 ---I-VR-----PRGQFAPS--------GNSPPPFGPSQKLDFELEMAAVVG-PGNELGK 254
I VR P PS P P M ++ ++
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP--SP---------MLSISNLTQEQVQD 351
Query: 255 PID-VNE---AADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALE 310
++ N A + + L+N A++ V GP P +L L
Sbjct: 352 YVNKTNSHLPAGKQVE-ISLVN--GAKN-----LVVSGP-----------P--QSLYGLN 390
Query: 311 PF---ACDSPKQDPQPLPYLAEK--ISKNYD-IS-------LEVQIKPAG---KEDSCVV 354
A D +P+ K S + ++ L PA +D +
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV----PASDLINKD---L 443
Query: 355 TRSNFKYLYWTLTQQLA---HHTINGCNLR--SGDLL----------------------- 386
++N + + + + T +G +LR SG +
Sbjct: 444 VKNNVS---FN-AKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT 499
Query: 387 -----GTGTISGPEPESLGCLLELTWNGQ 410
G G SG LG L +G
Sbjct: 500 HILDFGPGGASG-----LGVLTHRNKDGT 523
Score = 38.9 bits (90), Expect = 0.004
Identities = 37/223 (16%), Positives = 61/223 (27%), Gaps = 72/223 (32%)
Query: 79 RPAWKEA-RDMLQKLLSSNEATLRDNANLRQKSLV-----PMGK--VEMLLPMEIGDYTD 130
+ W A S + +N +L GK E M D
Sbjct: 1643 QDVWNRADNHFKDTYGFSILDIVINNP----VNLTIHFGGEKGKRIRENYSAMIFETIVD 1698
Query: 131 -------FFSSMHHAKNCGTIFRGPA-------NAVPANWYVILKSTSKQGIVSVLTLVY 176
F ++ + FR PA LTL+
Sbjct: 1699 GKLKTEKIFKEINE-HSTSYTFRSEKGLLSATQFTQPA-----------------LTLME 1740
Query: 177 YSIF-HLQVYRVVP---YFRFHLPIAYH--G-----RASSVVIS---GTDIVRPRGQFAP 222
+ F L+ ++P F A H G + + V+S ++V RG
Sbjct: 1741 KAAFEDLKSKGLIPADATF------AGHSLGEYAALASLADVMSIESLVEVVFYRGMTM- 1793
Query: 223 SGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHI 265
P + ++ M A + PG + EA ++
Sbjct: 1794 --QVAVPRDELGRSNY--GMIA-INPG-RVAASFS-QEALQYV 1829
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 7e-05
Identities = 71/459 (15%), Positives = 127/459 (27%), Gaps = 137/459 (29%)
Query: 55 FNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNE------------ATLR- 101
F + + DC K+ +DM + +LS E TLR
Sbjct: 25 FEDAFVDNFDC-----------------KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 102 -DNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWYVIL 160
+Q+ +V E+L +Y F S + R P ++ Y+
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRI----NY-KFLMSPIKTEQ-----RQP--SMMTRMYIEQ 115
Query: 161 KSTSKQGIVSVLTLVYYSIFHLQVYRVVPY--FRFHL----PIAY---HGRA----SSVV 207
+ V V R+ PY R L P G + V
Sbjct: 116 RDRL-YNDNQVFA-------KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 208 IS-----GTDIVRPRGQF-APSGNSPPP---FGPSQKLDFELEMAAVVGPGNELGKPIDV 258
+ F N P QKL ++++ + + +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 259 NEAADHIFGVM-----------LMNDWSARDIQAWE----------YVPLGPFLGKSFGT 297
+ + ++ L+N +A+ A+ + + FL + T
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 298 TLS----PWIVTLD-ALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSC 352
+S +T D PQ LP + +S+ I + ++
Sbjct: 288 HISLDHHSMTLTPDEVKSLLL-KYLDCRPQDLPREVLTTNP-RRLSI---IAESIRDGLA 342
Query: 353 VVTRSNFKYL-YWTLTQQLAHHTINGC--NLRSGDL------LGTGTISGPE----PESL 399
T N+K++ LT I L + L + P P
Sbjct: 343 --TWDNWKHVNCDKLT-----TIIESSLNVLEPAEYRKMFDRLS---VF-PPSAHIPTI- 390
Query: 400 GCLLELTWNGQKP----LSLDGFTRKFL--EDGDEVTFT 432
LL L W + ++ + L + E T +
Sbjct: 391 --LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
>1vra_A Arginine biosynthesis bifunctional protein ARGJ; 10175521, S
genomics, joint center for structural genomics, JCSG;
HET: MSE UNL; 2.00A {Bacillus halodurans}
Length = 208
Score = 28.3 bits (64), Expect = 3.9
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 417 GFTRKFLEDGDEVTFTGFCKGNG 439
+ + +G VT G KG+G
Sbjct: 179 HTCYQTIVNGKTVTVGGVAKGSG 201
>3it4_A Arginine biosynthesis bifunctional protein ARGJ alpha chain;
ornithine acetyltransferase, structural genomics; 1.70A
{Mycobacterium tuberculosis} PDB: 3it6_A
Length = 199
Score = 27.6 bits (62), Expect = 7.4
Identities = 7/17 (41%), Positives = 7/17 (41%)
Query: 423 LEDGDEVTFTGFCKGNG 439
L D T G KG G
Sbjct: 176 LHHHDNWTVGGMAKGAG 192
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 9.5
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 8/31 (25%)
Query: 303 IVTLDA-LEPFACDSPKQDPQPLPYLAEKIS 332
+ L A L+ +A DS P LA K +
Sbjct: 22 LKKLQASLKLYADDSA-------PALAIKAT 45
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.428
Gapped
Lambda K H
0.267 0.0823 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,185,653
Number of extensions: 431854
Number of successful extensions: 851
Number of sequences better than 10.0: 1
Number of HSP's gapped: 825
Number of HSP's successfully gapped: 22
Length of query: 456
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 359
Effective length of database: 3,993,456
Effective search space: 1433650704
Effective search space used: 1433650704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)