RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 012786
(456 letters)
>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 298
Score = 320 bits (822), Expect = e-108
Identities = 178/331 (53%), Positives = 221/331 (66%), Gaps = 37/331 (11%)
Query: 125 IGDYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIFHLQV 184
IGDYTDF+SS HA N G +FRG NA+ NW
Sbjct: 3 IGDYTDFYSSRQHATNVGIMFRGKENALLPNWL--------------------------- 35
Query: 185 YRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAA 244
HLP+ YHGRASS+V+SGT I RP GQ P + PP +G + LD ELEMA
Sbjct: 36 ---------HLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELEMAF 86
Query: 245 VVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIV 304
VGPGN G+PI +++A +HIFG++LMNDWSARDIQ WEYVPLGPFLGKSFGTT+SPW+V
Sbjct: 87 FVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISPWVV 146
Query: 305 TLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYW 364
+DAL PF +PKQDP+PLPYL +DI+L V +K G + + RSNFK++YW
Sbjct: 147 PMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHMYW 206
Query: 365 TLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKFL 423
T+ QQL HH++NGCNLR GDLL +GTISG +PES G +LEL+W G K + + G TR FL
Sbjct: 207 TMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGSMLELSWKGTKAIDVGQGQTRTFL 266
Query: 424 EDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 454
DGDEV TG C+G+GY VGFG C+GK++P+
Sbjct: 267 LDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 297
>d1hyoa1 b.34.8.1 (A:1-118) Fumarylacetoacetate hydrolase, FAH,
N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 118
Score = 140 bits (354), Expect = 5e-41
Identities = 56/118 (47%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Query: 5 SFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSD 64
SFI V DS FPIQNLPYGVF + R GVAIG+ +LDLS I + K
Sbjct: 2 SFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKHLFTGPA-LSKHQH 60
Query: 65 CFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLP 122
F + LN F+ LG+ AWKEAR LQ LLS+++A LRD+ LRQ++ M LP
Sbjct: 61 VFDETTLNNFMGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHLP 118
>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 257
Score = 72.6 bits (177), Expect = 5e-15
Identities = 40/221 (18%), Positives = 69/221 (31%), Gaps = 32/221 (14%)
Query: 196 PIAYHGRASSVVISGTDIVRPRGQFAPS----------GNSPPPFGPSQKLDFELEMAAV 245
P + SS+V + + + A S P K+ E+E+A +
Sbjct: 33 PFFFLKPTSSIVTPLSSSLVKTTRPANSTFNGLNEDGTNPGPIFIPRGVKVHHEIELALI 92
Query: 246 VGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVT 305
V + E D I GV L D +AR++Q P+ T P
Sbjct: 93 VSKHLSNVTKMKPEEVYDSISGVALALDLTARNVQDEAKKKGLPWTISKGFDTFMPISAI 152
Query: 306 LDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWT 365
+ + + S QD + + V + + +
Sbjct: 153 VSREKFSSYKSNLQD-------------IFRVKCSV--------NGQLRQDGGTNLMLHP 191
Query: 366 LTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELT 406
L + L H + +L GD++ TGT +G G +
Sbjct: 192 LHKILQHIS-TMISLEPGDIILTGTPAGVGELKPGDRVHCE 231
>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 217
Score = 48.9 bits (116), Expect = 3e-07
Identities = 37/215 (17%), Positives = 74/215 (34%), Gaps = 46/215 (21%)
Query: 196 PIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKP 255
P+ + +++ G+ I+ P L ELE+ V+ + +
Sbjct: 35 PVLFLKPSTAYAPEGSPILMPAYTR--------------NLHHELELGVVM---GKRCRA 77
Query: 256 IDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPF-LGKSFGTTLSPWIVTLDALEPFAC 314
+ A D++ G L D +ARD+Q P+ L KSF +
Sbjct: 78 VPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVP-------- 129
Query: 315 DSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHT 374
EKI + + L +++ + + + +++ +++ +
Sbjct: 130 -------------KEKIPDPHKLKLWLKV------NGELRQEGETSSMIFSIPYIISYVS 170
Query: 375 INGCNLRSGDLLGTGTISGPEPESLGCLLELTWNG 409
L GD++ TGT G P +E +G
Sbjct: 171 -KIITLEEGDIILTGTPKGVGPVKENDEIEAGIHG 204
>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation
bifunctional isomerase/decarboxylase HpcE {Escherichia
coli [TaxId: 562]}
Length = 216
Score = 41.0 bits (95), Expect = 1e-04
Identities = 30/195 (15%), Positives = 65/195 (33%), Gaps = 32/195 (16%)
Query: 215 RPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDW 274
+ + + + +E E+ V+G + + +A D++ G + ND+
Sbjct: 39 KAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIGKQ---ARNVSEADAMDYVAGYTVCNDY 95
Query: 275 SARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKN 334
+ RD Y P + T + IV E I
Sbjct: 96 AIRDYLENYYRPNLRVKSRDGLTPMLSTIVP----------------------KEAIPDP 133
Query: 335 YDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGP 394
++++L + + + + L +++ +A+ + L GD++ TGT G
Sbjct: 134 HNLTLRTFV------NGELRQQGTTADLIFSVPFLIAYLS-EFMTLNPGDMIATGTPKGL 186
Query: 395 EPESLGCLLELTWNG 409
G + + G
Sbjct: 187 SDVVPGDEVVVEVEG 201
>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation
bifunctional isomerase/decarboxylase HpcE {Escherichia
coli [TaxId: 562]}
Length = 213
Score = 35.3 bits (80), Expect = 0.008
Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 1/47 (2%)
Query: 363 YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNG 409
Q L+ + L GD + GT G + + G
Sbjct: 150 QRNAAQLLSALS-EFATLNPGDAILLGTPQARVEIQPGDRVRVLAEG 195
>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli
[TaxId: 562]}
Length = 221
Score = 34.0 bits (77), Expect = 0.020
Identities = 31/196 (15%), Positives = 60/196 (30%), Gaps = 31/196 (15%)
Query: 215 RPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDW 274
+P + E+E+A ++G + I G + D
Sbjct: 47 KPETALCDLRQPLAIPSDFGSVHHEVELAVLIGAT---LRQATEEHVRKAIAGYGVALDL 103
Query: 275 SARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPL-PYLAEKISK 333
+ RD+Q P+ A D+ + +
Sbjct: 104 TLRDVQGKMKKAGQPWEK------------------AKAFDNSCPLSGFIPAAEFTGDPQ 145
Query: 334 NYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISG 393
N +SL V + + + + +A+ + L++GD++ TGT G
Sbjct: 146 NTTLSLSV--------NGEQRQQGTTADMIHKIVPLIAYMS-KFFTLKAGDVVLTGTPDG 196
Query: 394 PEPESLGCLLELTWNG 409
P G L +T++G
Sbjct: 197 VGPLQSGDELTVTFDG 212
>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD
{Escherichia coli [TaxId: 562]}
Length = 261
Score = 29.5 bits (65), Expect = 0.70
Identities = 32/183 (17%), Positives = 53/183 (28%), Gaps = 24/183 (13%)
Query: 227 PPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVP 286
PF + E E+A V+ I +E + I V+ + I+ W
Sbjct: 93 IIPFSRVLQPRIEAEIALVLNRDLP-ATDITFDELYNAIEWVLPALEVVGSRIRDW---- 147
Query: 287 LGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPA 346
I +D + A P A KN + + +
Sbjct: 148 ---------------SIQFVDTVADNASCGVYVIGGPAQRPAGLDLKNCAMKMTRNNEEV 192
Query: 347 GKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELT 406
W L +++A G LR+GD++ TG + + G E
Sbjct: 193 SSGRGSECLGHPLNAAVW-LARKMASL---GEPLRTGDIILTGALGPMVAVNAGDRFEAH 248
Query: 407 WNG 409
G
Sbjct: 249 IEG 251
>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine
O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId:
10090]}
Length = 382
Score = 28.5 bits (63), Expect = 1.9
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 69 PNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDY 128
P++ S R W +AR+ L L N L Q SL + +Y
Sbjct: 225 PSIAALTSEERTRWAKAREYLISLDPENLTLLE----KIQTSLFVYSIEDSSPHATPEEY 280
Query: 129 TDFFSSMHH 137
+ F +
Sbjct: 281 SQVFEMLLG 289
>d1b65a_ d.154.1.1 (A:) L-aminopeptidase D-Ala-esterase/amidase DmpA
{Ochrobactrum anthropi [TaxId: 529]}
Length = 367
Score = 28.4 bits (63), Expect = 2.1
Identities = 9/90 (10%), Positives = 20/90 (22%), Gaps = 8/90 (8%)
Query: 202 RASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVV-------GPGNELGK 254
A +G + G P + + A V +
Sbjct: 67 YAGVHRFNGNGEMTGTHWIEDGGYFLGPVVITNTHGIGMAHHATVRWMVDRYASTYQTDD 126
Query: 255 PIDVNEAADHIFGVMLMNDWSARDIQAWEY 284
+ + + L ND + + +
Sbjct: 127 FLWIMPVVAETYDGAL-NDINGFPVTEADV 155
>d1c0aa2 d.74.4.1 (A:288-420) Prokaryotic AspRS, insert domain
{Escherichia coli [TaxId: 562]}
Length = 133
Score = 27.3 bits (60), Expect = 2.1
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 7/30 (23%)
Query: 122 PMEIGDYTDFFSSMHHAKNCG-TIFRGPAN 150
PME+ D D K+ +F GPAN
Sbjct: 2 PMELTDVADLL------KSVEFAVFAGPAN 25
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium
meliloti [TaxId: 382]}
Length = 79
Score = 25.9 bits (57), Expect = 2.7
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 250 NELGKPIDVNEAADHIFGVMLMNDW 274
G P+ E+ + ++G M +W
Sbjct: 54 EASGVPMSKEESREIVYG-MPYEEW 77
>d1p80a2 e.5.1.1 (A:27-597) Catalase II {Escherichia coli, HPII
[TaxId: 562]}
Length = 571
Score = 27.6 bits (61), Expect = 4.2
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVL--DLSEISKAGLFNGP 58
L+ FI E +HF + +P E AR A G + LS+I+KA + P
Sbjct: 79 LEDFILREKITHFDHERIP------ERIVHARGSAAHGYFQPYKSLSDITKADFLSDP 130
>d1si8a_ e.5.1.1 (A:) Catalase I {Enterococcus faecalis [TaxId:
1351]}
Length = 474
Score = 27.5 bits (61), Expect = 4.2
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVL--DLSEISKAGLFNGP 58
+Q +E +HF + +P E A+ A G + + +++ +KA +
Sbjct: 28 IQDVHLLEKLAHFNRERVP------ERVVHAKGAGAHGIFKVSQSMAQYTKADFLSEV 79
>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC)
{Escherichia coli [TaxId: 562]}
Length = 260
Score = 26.8 bits (58), Expect = 4.7
Identities = 14/103 (13%), Positives = 29/103 (28%), Gaps = 19/103 (18%)
Query: 263 DHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQ 322
I G + + +P K T +P++ + +
Sbjct: 171 IGITGWVCDERRGLELRELLPLIPAE----KLLIETDAPYL----LPRDLTPKPSSRRNE 222
Query: 323 P--LPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLY 363
P LP++ ++I+ T +N K L+
Sbjct: 223 PAHLPHILQRIAHWRGEDA---------AWLAATTDANVKTLF 256
>d1qwla_ e.5.1.1 (A:) Catalase I {Helicobacter pylori [TaxId:
210]}
Length = 491
Score = 27.2 bits (60), Expect = 4.9
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVL--DLSEISKAGLFNGP 58
LQS +E + F + +P E A+ A G + + D+++ +KA +F+
Sbjct: 33 LQSTWFLEKLAAFDRERIP------ERVVHAKGSGAYGTFTVTKDITKYTKAKIFSKV 84
>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
Length = 476
Score = 26.8 bits (59), Expect = 5.6
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVL--DLSEISKAGLFNGP 58
LQ +E +HF + +P E A+ A G + + D+++ ++A +F+
Sbjct: 28 LQDVWFLEKLAHFDREVIP------ERRMHAKGSGAFGTFTVTHDITKYTRAKIFSEV 79
>d1a4ea_ e.5.1.1 (A:) Catalase I {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 488
Score = 26.8 bits (59), Expect = 5.8
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVL--DLSEISKAGLFNGP 58
LQ + ++ +HF +N+P + A A G + + D+++I + +F+
Sbjct: 33 LQDYNLIDSLAHFNRENIP------QRNPHAHGSGAFGYFEVTDDITDICGSAMFSKI 84
>d1tyeb1 b.1.15.1 (B:58-106,B:355-440) Hybrid domain of integrin
beta {Human (Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 25.6 bits (56), Expect = 7.7
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 423 LEDGDEVTFTGFCKGNGYTVGFGTCSG 449
L + ++F C N G +C G
Sbjct: 57 LPEELSLSFNATCLNNEVIPGLKSCMG 83
>d1gwea_ e.5.1.1 (A:) Catalase I {Micrococcus lysodeikticus
[TaxId: 1270]}
Length = 498
Score = 26.4 bits (58), Expect = 9.4
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVL--DLSEISKAGLFN 56
L +E HF N+P E A+ A GE+ + D+S+ +KA +F
Sbjct: 33 LHDTHLLETHQHFNRMNIP------ERRPHAKGSGAFGEFEVTEDVSKYTKALVFQ 82
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.428
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,759,589
Number of extensions: 83667
Number of successful extensions: 183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 22
Length of query: 456
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 368
Effective length of database: 1,199,356
Effective search space: 441363008
Effective search space used: 441363008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)