Query 012788
Match_columns 456
No_of_seqs 268 out of 2142
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 06:19:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02793 Probable polygalactur 100.0 6.5E-76 1.4E-80 598.3 48.4 363 37-432 49-425 (443)
2 PLN02155 polygalacturonase 100.0 5.7E-75 1.2E-79 582.4 46.1 360 36-431 23-393 (394)
3 PLN02218 polygalacturonase ADP 100.0 9.3E-74 2E-78 579.8 44.7 355 36-430 63-431 (431)
4 PLN02188 polygalacturonase/gly 100.0 8.2E-74 1.8E-78 576.5 42.1 357 35-430 31-404 (404)
5 PLN03003 Probable polygalactur 100.0 9.1E-73 2E-77 570.3 44.5 358 38-434 21-393 (456)
6 PLN03010 polygalacturonase 100.0 2.2E-72 4.7E-77 564.8 45.5 348 37-431 43-404 (409)
7 PF00295 Glyco_hydro_28: Glyco 100.0 2.3E-56 4.9E-61 443.5 31.1 312 71-420 2-323 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 6.4E-48 1.4E-52 394.5 28.4 301 36-345 78-404 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 100.0 6.6E-27 1.4E-31 232.5 24.5 166 38-247 35-200 (455)
10 PF12708 Pectate_lyase_3: Pect 99.9 1.1E-21 2.5E-26 184.7 19.7 220 40-314 1-224 (225)
11 PLN03003 Probable polygalactur 99.9 4.9E-19 1.1E-23 179.9 28.1 212 178-421 105-354 (456)
12 PLN02218 polygalacturonase ADP 99.8 2.1E-19 4.5E-24 183.1 24.7 215 178-424 148-408 (431)
13 PLN02793 Probable polygalactur 99.8 1.3E-18 2.8E-23 178.2 28.9 214 178-423 135-393 (443)
14 PLN03010 polygalacturonase 99.8 2.3E-18 5E-23 174.0 29.0 237 145-421 105-371 (409)
15 PLN02155 polygalacturonase 99.8 3.6E-18 7.8E-23 172.2 29.8 216 179-425 108-364 (394)
16 PF00295 Glyco_hydro_28: Glyco 99.8 2.3E-18 5E-23 171.4 23.3 225 177-433 51-321 (326)
17 PF03718 Glyco_hydro_49: Glyco 99.8 8.7E-18 1.9E-22 168.9 27.1 271 75-405 232-554 (582)
18 PLN02188 polygalacturonase/gly 99.8 1.9E-17 4.1E-22 167.7 25.9 216 179-424 115-374 (404)
19 TIGR03805 beta_helix_1 paralle 99.7 6.7E-15 1.4E-19 145.4 21.7 196 60-339 1-203 (314)
20 COG5434 PGU1 Endopygalactoruna 99.4 2E-12 4.3E-17 133.7 15.7 213 135-379 165-399 (542)
21 PF13229 Beta_helix: Right han 98.9 5E-08 1.1E-12 85.9 13.3 142 179-346 2-145 (158)
22 TIGR03808 RR_plus_rpt_1 twin-a 98.8 1.1E-07 2.3E-12 96.0 16.2 143 179-345 108-290 (455)
23 TIGR03805 beta_helix_1 paralle 98.8 3.7E-07 8.1E-12 90.4 19.7 152 179-347 79-251 (314)
24 PF12541 DUF3737: Protein of u 98.8 4.5E-08 9.9E-13 91.2 10.6 127 181-344 93-230 (277)
25 PF12541 DUF3737: Protein of u 98.7 3.2E-07 7E-12 85.6 12.2 103 180-318 131-233 (277)
26 PF13229 Beta_helix: Right han 98.5 1.3E-06 2.8E-11 76.8 12.7 122 178-319 24-147 (158)
27 PF07602 DUF1565: Protein of u 98.5 8.7E-06 1.9E-10 77.0 17.3 175 57-317 15-195 (246)
28 COG3420 NosD Nitrous oxidase a 98.5 3.4E-05 7.3E-10 74.5 20.8 159 73-282 32-193 (408)
29 PF05048 NosD: Periplasmic cop 98.4 4.9E-06 1.1E-10 79.2 14.6 134 180-344 16-150 (236)
30 PRK10123 wcaM putative colanic 98.4 4.3E-05 9.4E-10 72.2 19.7 53 36-101 30-85 (464)
31 PLN02480 Probable pectinestera 98.4 7.3E-05 1.6E-09 74.3 22.3 131 183-338 129-276 (343)
32 PF05048 NosD: Periplasmic cop 98.4 1.1E-05 2.5E-10 76.7 16.1 115 179-317 37-152 (236)
33 PF03718 Glyco_hydro_49: Glyco 98.4 7.2E-06 1.6E-10 83.8 14.9 171 203-403 323-513 (582)
34 smart00656 Amb_all Amb_all dom 98.3 4.4E-05 9.5E-10 70.2 15.9 97 202-310 33-144 (190)
35 COG3866 PelB Pectate lyase [Ca 98.2 8.5E-05 1.9E-09 70.8 17.4 63 139-220 95-165 (345)
36 COG3866 PelB Pectate lyase [Ca 98.2 6.5E-05 1.4E-09 71.6 15.6 138 180-332 95-249 (345)
37 PF14592 Chondroitinas_B: Chon 98.2 7.1E-05 1.5E-09 75.7 15.9 26 56-86 3-28 (425)
38 smart00656 Amb_all Amb_all dom 98.0 0.0005 1.1E-08 63.1 16.4 128 179-316 33-173 (190)
39 PLN02682 pectinesterase family 97.9 0.002 4.4E-08 64.6 21.0 134 181-339 158-305 (369)
40 PF12708 Pectate_lyase_3: Pect 97.9 0.00057 1.2E-08 63.9 16.4 124 188-343 94-224 (225)
41 PF00544 Pec_lyase_C: Pectate 97.8 0.00012 2.6E-09 67.8 10.2 96 202-310 38-158 (200)
42 PLN02773 pectinesterase 97.8 0.0052 1.1E-07 60.6 21.9 133 181-338 97-239 (317)
43 PLN02176 putative pectinestera 97.8 0.012 2.6E-07 58.6 23.7 130 184-338 120-270 (340)
44 PLN02497 probable pectinestera 97.8 0.0043 9.3E-08 61.5 20.4 131 183-338 112-263 (331)
45 PLN02304 probable pectinestera 97.7 0.012 2.6E-07 59.2 22.3 130 183-338 159-311 (379)
46 PRK10531 acyl-CoA thioesterase 97.6 0.014 3E-07 59.5 21.5 117 180-310 200-336 (422)
47 PLN02634 probable pectinestera 97.6 0.037 8.1E-07 55.4 24.0 130 184-338 147-290 (359)
48 PLN02665 pectinesterase family 97.6 0.018 3.8E-07 58.0 21.9 134 181-339 149-298 (366)
49 PLN02432 putative pectinestera 97.5 0.036 7.9E-07 54.1 21.9 131 183-338 91-229 (293)
50 PLN02170 probable pectinestera 97.4 0.023 5E-07 59.6 20.7 134 180-338 307-451 (529)
51 PLN02671 pectinesterase 97.4 0.045 9.7E-07 54.9 21.2 132 182-338 150-294 (359)
52 PF01095 Pectinesterase: Pecti 97.3 0.0049 1.1E-07 60.6 13.2 132 183-339 84-236 (298)
53 PLN02201 probable pectinestera 97.1 0.091 2E-06 55.4 21.3 138 182-339 289-442 (520)
54 PLN02933 Probable pectinestera 97.1 0.1 2.2E-06 55.1 21.1 139 181-339 300-454 (530)
55 PF00544 Pec_lyase_C: Pectate 97.1 0.012 2.6E-07 54.5 12.8 128 180-317 39-188 (200)
56 PLN02708 Probable pectinestera 97.0 0.11 2.5E-06 55.2 21.6 108 183-310 327-449 (553)
57 PLN02484 probable pectinestera 97.0 0.1 2.2E-06 56.0 21.3 138 182-339 356-509 (587)
58 PLN02916 pectinesterase family 97.0 0.12 2.6E-06 54.1 21.0 139 181-339 272-426 (502)
59 PLN02506 putative pectinestera 97.0 0.072 1.6E-06 56.5 19.6 133 181-338 314-458 (537)
60 COG3420 NosD Nitrous oxidase a 97.0 0.025 5.5E-07 55.1 14.5 123 139-290 123-245 (408)
61 PLN02713 Probable pectinestera 97.0 0.082 1.8E-06 56.4 19.8 137 183-339 337-489 (566)
62 PF12218 End_N_terminal: N ter 97.0 0.00092 2E-08 48.1 3.5 39 48-91 1-39 (67)
63 PLN03043 Probable pectinestera 96.9 0.067 1.5E-06 56.8 18.7 138 181-338 308-461 (538)
64 PLN02468 putative pectinestera 96.9 0.092 2E-06 56.1 19.8 136 183-338 342-489 (565)
65 PLN02217 probable pectinestera 96.9 0.097 2.1E-06 56.7 20.1 137 183-339 334-486 (670)
66 PLN02995 Probable pectinestera 96.9 0.11 2.5E-06 55.0 20.1 137 183-339 309-461 (539)
67 PF01696 Adeno_E1B_55K: Adenov 96.9 0.1 2.2E-06 52.5 18.4 54 41-109 44-99 (386)
68 PLN02416 probable pectinestera 96.8 0.12 2.7E-06 54.8 19.1 136 183-338 314-465 (541)
69 PLN02745 Putative pectinestera 96.8 0.22 4.7E-06 53.5 21.1 136 183-338 369-520 (596)
70 PLN02314 pectinesterase 96.8 0.16 3.4E-06 54.7 20.1 136 183-339 362-509 (586)
71 PLN02197 pectinesterase 96.7 0.24 5.2E-06 53.0 20.9 137 182-338 360-513 (588)
72 PLN02301 pectinesterase/pectin 96.6 0.21 4.6E-06 53.1 19.2 110 181-310 318-438 (548)
73 PLN02488 probable pectinestera 96.5 0.38 8.3E-06 50.3 20.3 136 183-338 281-432 (509)
74 PLN02990 Probable pectinestera 96.5 0.26 5.6E-06 52.8 19.6 137 183-339 344-496 (572)
75 PLN02313 Pectinesterase/pectin 96.3 0.31 6.8E-06 52.4 18.7 108 183-310 359-477 (587)
76 PF07602 DUF1565: Protein of u 94.6 0.4 8.6E-06 45.7 11.0 103 269-376 121-225 (246)
77 COG4677 PemB Pectin methyleste 94.4 1.5 3.2E-05 42.9 14.2 46 55-101 92-140 (405)
78 TIGR03804 para_beta_helix para 92.8 0.14 2.9E-06 34.9 3.2 28 229-256 1-28 (44)
79 PF03211 Pectate_lyase: Pectat 92.6 2.2 4.7E-05 39.7 11.7 129 210-372 62-194 (215)
80 TIGR03804 para_beta_helix para 91.4 0.37 8E-06 32.7 4.1 40 203-247 2-41 (44)
81 PLN02480 Probable pectinestera 90.7 13 0.00028 37.4 15.8 113 204-338 127-251 (343)
82 PLN02773 pectinesterase 90.4 7.1 0.00015 38.8 13.6 113 204-339 97-212 (317)
83 PF09251 PhageP22-tail: Salmon 90.1 20 0.00044 36.5 16.2 24 269-292 263-286 (549)
84 PRK10123 wcaM putative colanic 88.8 1.5 3.3E-05 42.1 7.1 64 269-338 300-373 (464)
85 PF14592 Chondroitinas_B: Chon 88.1 3.7 8E-05 42.2 9.9 44 296-339 308-363 (425)
86 PLN02682 pectinesterase family 87.9 32 0.0007 34.9 16.3 113 205-339 159-280 (369)
87 PLN02698 Probable pectinestera 86.9 12 0.00025 39.7 13.1 137 183-339 267-419 (497)
88 PF01696 Adeno_E1B_55K: Adenov 85.3 46 0.00099 33.9 20.1 35 186-220 121-156 (386)
89 PF08480 Disaggr_assoc: Disagg 84.3 18 0.00038 32.8 11.0 123 186-341 2-145 (198)
90 PF08480 Disaggr_assoc: Disagg 84.0 20 0.00043 32.4 11.1 47 269-316 33-83 (198)
91 PF03211 Pectate_lyase: Pectat 83.6 38 0.00083 31.6 14.6 129 185-333 60-194 (215)
92 PLN02665 pectinesterase family 83.0 34 0.00074 34.7 13.9 115 205-340 150-273 (366)
93 PLN02634 probable pectinestera 78.8 36 0.00079 34.4 12.3 112 207-339 147-266 (359)
94 PLN02708 Probable pectinestera 78.4 41 0.00088 36.2 13.3 112 206-339 327-449 (553)
95 PLN02506 putative pectinestera 77.7 53 0.0011 35.2 13.8 113 204-338 314-433 (537)
96 PLN02170 probable pectinestera 76.3 75 0.0016 33.9 14.3 114 204-339 308-427 (529)
97 PLN02671 pectinesterase 75.6 86 0.0019 31.8 13.9 111 206-338 151-269 (359)
98 PLN02432 putative pectinestera 74.6 62 0.0014 31.8 12.5 109 206-338 91-204 (293)
99 PRK10531 acyl-CoA thioesterase 74.2 65 0.0014 33.3 12.9 127 204-339 201-336 (422)
100 PLN02217 probable pectinestera 73.8 66 0.0014 35.4 13.5 112 206-339 334-452 (670)
101 PLN02916 pectinesterase family 73.8 61 0.0013 34.3 12.9 113 205-339 273-392 (502)
102 PLN02488 probable pectinestera 71.9 85 0.0018 33.3 13.3 112 206-339 281-399 (509)
103 PLN02176 putative pectinestera 70.9 1.2E+02 0.0025 30.6 13.6 112 207-339 120-246 (340)
104 PLN02698 Probable pectinestera 70.4 57 0.0012 34.6 11.9 114 205-339 266-385 (497)
105 PLN02990 Probable pectinestera 69.9 1.2E+02 0.0026 32.8 14.3 114 206-340 344-463 (572)
106 PLN02995 Probable pectinestera 69.7 69 0.0015 34.4 12.4 112 206-338 309-426 (539)
107 PLN02933 Probable pectinestera 69.1 1.5E+02 0.0032 31.8 14.5 113 205-339 301-420 (530)
108 PF01095 Pectinesterase: Pecti 68.9 23 0.00049 35.0 8.1 111 206-338 84-201 (298)
109 PLN02314 pectinesterase 66.5 80 0.0017 34.3 12.2 113 206-339 362-480 (586)
110 PLN02713 Probable pectinestera 66.1 48 0.001 35.8 10.4 112 206-338 337-454 (566)
111 KOG1777 Putative Zn-finger pro 64.2 1.8E+02 0.004 30.1 13.7 30 74-103 47-76 (625)
112 PLN02416 probable pectinestera 63.3 56 0.0012 35.1 10.2 112 206-338 314-431 (541)
113 PLN03043 Probable pectinestera 62.4 63 0.0014 34.7 10.4 113 205-339 309-428 (538)
114 PLN02745 Putative pectinestera 62.0 73 0.0016 34.6 10.9 112 206-339 369-487 (596)
115 PLN02468 putative pectinestera 61.7 66 0.0014 34.7 10.5 112 206-339 342-460 (565)
116 PLN02301 pectinesterase/pectin 61.5 63 0.0014 34.7 10.2 113 205-339 319-438 (548)
117 PLN02201 probable pectinestera 61.4 84 0.0018 33.5 11.0 112 205-338 289-407 (520)
118 PLN02497 probable pectinestera 61.3 1.7E+02 0.0036 29.3 12.6 111 206-338 112-238 (331)
119 PLN02197 pectinesterase 61.1 66 0.0014 34.8 10.3 114 205-339 360-480 (588)
120 PF09251 PhageP22-tail: Salmon 61.1 1.4E+02 0.0031 30.7 11.8 87 235-332 263-365 (549)
121 PLN02304 probable pectinestera 56.9 1.1E+02 0.0025 31.1 10.6 111 206-338 159-286 (379)
122 PLN02484 probable pectinestera 56.7 74 0.0016 34.5 9.8 113 205-339 356-475 (587)
123 PLN02313 Pectinesterase/pectin 54.7 98 0.0021 33.6 10.4 113 206-339 359-477 (587)
124 smart00710 PbH1 Parallel beta- 49.9 17 0.00037 20.4 2.3 19 299-317 3-22 (26)
125 smart00722 CASH Domain present 47.1 1.5E+02 0.0034 24.5 8.8 13 185-197 44-56 (146)
126 smart00722 CASH Domain present 33.0 1.2E+02 0.0027 25.1 5.9 68 183-253 73-144 (146)
127 PRK09752 adhesin; Provisional 32.3 9.2E+02 0.02 28.6 17.2 37 299-335 223-262 (1250)
128 COG4677 PemB Pectin methyleste 31.9 1.4E+02 0.003 29.7 6.4 19 182-200 185-203 (405)
129 PHA00672 hypothetical protein 23.2 1.2E+02 0.0025 25.8 3.6 25 76-101 50-74 (152)
130 PF08194 DIM: DIM protein; In 21.9 95 0.0021 20.2 2.3 15 1-15 1-15 (36)
131 KOG1777 Putative Zn-finger pro 21.4 2.4E+02 0.0052 29.3 6.1 96 180-292 398-494 (625)
No 1
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=6.5e-76 Score=598.27 Aligned_cols=363 Identities=25% Similarity=0.421 Sum_probs=321.9
Q ss_pred CCceEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCC-ceeeeeeEe----ccceEEEeccCcEEEecCC
Q 012788 37 RPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSG-KWLTGSFNL----TSHLTLFLEKGAVILGSQN 111 (456)
Q Consensus 37 ~~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G-~Yl~g~l~L----~s~~tL~l~~ga~i~~~~~ 111 (456)
.+.++||+||||+|||++|||+|||+||++|| ++.+|++|+||+| +|++++|.| ||+++|+++ |+|+++.+
T Consensus 49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC--~~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~--g~l~~~~d 124 (443)
T PLN02793 49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMAC--SSKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQIS--GTIIAPKD 124 (443)
T ss_pred CceEEEhhhcccCCCCCCccHHHHHHHHHHHh--ccCCCCEEEECCCceEEEEEEEECCccCCCeEEEEE--EEEEccCC
Confidence 45799999999999999999999999999643 4678999999999 599999999 899999997 89999999
Q ss_pred CCCCCcCCCCCCCCcccccCCCcceeeEEEeeeeeEEEeccCceeeCCCccccccccc---CCCCCCCCeeEEEEeeccE
Q 012788 112 PSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSS---QSLNYSRPHLVEFISSENV 188 (456)
Q Consensus 112 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~---~~~~~~rp~~i~~~~~~nv 188 (456)
+.+|+.. ..+.||++.+.+|++|+|. |+|||+|+.||+.... ......||++|+|.+|+|+
T Consensus 125 ~~~w~~~---------------~~~~~i~~~~~~ni~ItG~-G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv 188 (443)
T PLN02793 125 PDVWKGL---------------NPRKWLYFHGVNHLTVEGG-GTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDL 188 (443)
T ss_pred hHHccCC---------------CCceEEEEecCceEEEEec-eEEECCCcccccccccccCCCCccCCceEEEEEeeccE
Confidence 9888632 1246899999999999997 9999999999975321 1122358999999999999
Q ss_pred EEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCC
Q 012788 189 VVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRP 268 (456)
Q Consensus 189 ~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~ 268 (456)
+|++++++|+|+|++++..|++|+|++++|.++..++|+||||+.+|+||+|+||+|.++||||++|++
T Consensus 189 ~v~gitl~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~----------- 257 (443)
T PLN02793 189 RVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGN----------- 257 (443)
T ss_pred EEECeEEEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCC-----------
Confidence 999999999999999999999999999999999889999999999999999999999999999999986
Q ss_pred cccEEEEEEEEecCCCCeeEecccc----cCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcceeEE
Q 012788 269 TTDVHIRRVLLQSSSGSSVAFGSEM----SGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFG 344 (456)
Q Consensus 269 s~ni~I~n~~~~~~~~~gi~igs~~----~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~~i~ 344 (456)
++||+|+||+|.. +|||+|||++ .+.|+||+|+||+|.++.+|+|||+|++++|.|+||+|+||+|+++.+||.
T Consensus 258 s~nI~I~n~~c~~--GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~ 335 (443)
T PLN02793 258 SSRIKIRNIACGP--GHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPII 335 (443)
T ss_pred cCCEEEEEeEEeC--CccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEE
Confidence 8999999999974 7999999973 467999999999999999999999999989999999999999999999999
Q ss_pred EeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccc-eeEEEEeeCCCCeeeEEEEeEEEEeCCCCCCcceeeeeeecccc
Q 012788 345 ACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-IAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGSSES 423 (456)
Q Consensus 345 i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~-~~~~~~g~~~~~~~~I~~~nv~i~~~~~~~~~~~c~~v~g~~~~ 423 (456)
|+++|++......++...+.|+||+|+||+++... .++.+.|+++.||+||+|+||+|+...++...+.|+|++|....
T Consensus 336 I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~~~~~~C~n~~g~~~~ 415 (443)
T PLN02793 336 IDQYYCDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGDFTESFCWEAYGSSSG 415 (443)
T ss_pred EEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecCCCCCCcEEEccEEeECC
Confidence 99999763322222333468999999999999864 57889999999999999999999987665557999999999876
Q ss_pred -ccCCCCCCc
Q 012788 424 -VFPEPCPEL 432 (456)
Q Consensus 424 -~~p~~c~~~ 432 (456)
+.|+||++.
T Consensus 416 ~~~p~~C~~~ 425 (443)
T PLN02793 416 QVYPPPCFSD 425 (443)
T ss_pred eEcCCccccC
Confidence 778899864
No 2
>PLN02155 polygalacturonase
Probab=100.00 E-value=5.7e-75 Score=582.42 Aligned_cols=360 Identities=24% Similarity=0.341 Sum_probs=316.4
Q ss_pred CCCceEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCCceeeeeeEe----ccceEEEeccCcEEEecCC
Q 012788 36 PRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNL----TSHLTLFLEKGAVILGSQN 111 (456)
Q Consensus 36 ~~~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l~L----~s~~tL~l~~ga~i~~~~~ 111 (456)
..+.++||++|||+|||++|||+|||+||++|| +++||++|+||+|+|++++|.| ||+++|+|+ ++|+++.+
T Consensus 23 ~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC--~~~gGg~v~vP~G~yl~g~i~l~gpcksnv~l~l~--G~l~~~~d 98 (394)
T PLN02155 23 SASNVFNVVSFGAKPDGVTDSTAAFLKAWQGAC--GSASSATVVVPTGTFLLKVITFGGPCKSKITFQVA--GTVVAPED 98 (394)
T ss_pred cCCcEEEhhhcCcCCCCccccHHHHHHHHHHHc--ccCCCeEEEECCCcEEEEEEEEcccCCCCceEEEe--eEEECccc
Confidence 345789999999999999999999999997443 5678999999999999999999 899999997 57888776
Q ss_pred CCCCCcCCCCCCCCcccccCCCcceeeEEEeeeeeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEE
Q 012788 112 PSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVS 191 (456)
Q Consensus 112 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~ 191 (456)
+..|.. ...|+.+.+++++.|+| |+|||+|+.||...........+|++++|.+|+|++|+
T Consensus 99 ~~~~~~-----------------~~~wi~~~~~~~i~i~G--G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~ 159 (394)
T PLN02155 99 YRTFGN-----------------SGYWILFNKVNRFSLVG--GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIIS 159 (394)
T ss_pred cccccc-----------------cceeEEEECcCCCEEEc--cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEE
Confidence 655531 02378889999999999 99999999999864433333457889999999999999
Q ss_pred eEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCccc
Q 012788 192 NLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTD 271 (456)
Q Consensus 192 ~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~n 271 (456)
+++++|||.|++++..|++|+|++++|.++.+++|+||||+.+|+||+|+||+|.+|||||++|++ ++|
T Consensus 160 gitl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~g-----------s~n 228 (394)
T PLN02155 160 GVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPG-----------TRN 228 (394)
T ss_pred CeEEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCC-----------Cce
Confidence 999999999999999999999999999999889999999999999999999999999999999997 899
Q ss_pred EEEEEEEEecCCCCeeEeccc----ccCcEEeEEEEeEEEECCcceEEEEecCC-CCceEEeEEEEceEecCcceeEEEe
Q 012788 272 VHIRRVLLQSSSGSSVAFGSE----MSGGISNVQVEKIHLYDSLNGIEFRTTKG-RGGYIRQIVISDAELYNINVAFGAC 346 (456)
Q Consensus 272 i~I~n~~~~~~~~~gi~igs~----~~~~v~nI~v~n~~~~~~~~gi~iks~~g-~~g~v~nI~~~ni~~~~~~~~i~i~ 346 (456)
|+|+||+|.. +|||+|||+ ..++|+||+|+||+|.++.+|+|||||.+ ++|+|+||+|+||+|+++++||.|+
T Consensus 229 I~I~n~~c~~--GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~ 306 (394)
T PLN02155 229 FLITKLACGP--GHGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIID 306 (394)
T ss_pred EEEEEEEEEC--CceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEE
Confidence 9999999984 799999997 36789999999999999999999999965 6899999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccc-eeEEEEeeCCCCeeeEEEEeEEEEeCCCCCCcceeeeeeeccccc-
Q 012788 347 GNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-IAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGSSESV- 424 (456)
Q Consensus 347 ~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~-~~~~~~g~~~~~~~~I~~~nv~i~~~~~~~~~~~c~~v~g~~~~~- 424 (456)
+.|++.......+...+.|+||+|+||+++... .++.|.|+++.||+||+|+||+++..++.+..+.|+|++|....+
T Consensus 307 q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~~G~~~~~~ 386 (394)
T PLN02155 307 QNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVI 386 (394)
T ss_pred ecccCCCCCCcCCCCCeEEEEEEEEeeEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCCCccCcEEeccEeEEcccC
Confidence 999864322212223368999999999999874 577899999999999999999999887666689999999998876
Q ss_pred cCCCCCC
Q 012788 425 FPEPCPE 431 (456)
Q Consensus 425 ~p~~c~~ 431 (456)
.|++|.+
T Consensus 387 ~p~~c~~ 393 (394)
T PLN02155 387 QPTSCLN 393 (394)
T ss_pred CcccccC
Confidence 6778975
No 3
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=9.3e-74 Score=579.81 Aligned_cols=355 Identities=28% Similarity=0.443 Sum_probs=315.2
Q ss_pred CCCceEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCC-ceeeeeeEec----cceEEEeccCcEEEecC
Q 012788 36 PRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSG-KWLTGSFNLT----SHLTLFLEKGAVILGSQ 110 (456)
Q Consensus 36 ~~~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G-~Yl~g~l~L~----s~~tL~l~~ga~i~~~~ 110 (456)
+++.++||+||||+|||++|||+|||+||++|| ++.|+++|+||+| +|++++|.|+ ++++|++ +|+|+++.
T Consensus 63 ~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aC--s~~Ggg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l--~g~L~~s~ 138 (431)
T PLN02218 63 RTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKAC--SSNGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQI--FGTLSASQ 138 (431)
T ss_pred CCCcEEEeeecccCCCCCcccHHHHHHHHHHhh--hcCCCcEEEECCCCeEEEeeeEecCccCCceEEEE--EEEEEeCC
Confidence 567899999999999999999999999997543 4578889999999 6999999995 6778877 59999999
Q ss_pred CCCCCCcCCCCCCCCcccccCCCcceeeEEEeeeeeEEEecc-CceeeCCCcccccccccCC---CCCCCCeeEEEEeec
Q 012788 111 NPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGD-NGTIDGQGSVWWDWFSSQS---LNYSRPHLVEFISSE 186 (456)
Q Consensus 111 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~-~GtidG~g~~ww~~~~~~~---~~~~rp~~i~~~~~~ 186 (456)
+.++|+. +..||.+.+++||+|+|. +|+|||+|+.||....... ....||+++.|.+|+
T Consensus 139 d~~~y~~-----------------~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~ 201 (431)
T PLN02218 139 KRSDYKD-----------------ISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSK 201 (431)
T ss_pred Chhhccc-----------------cccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccc
Confidence 9988853 124788899999999994 3999999999997643211 124699999999999
Q ss_pred cEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccC
Q 012788 187 NVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYG 266 (456)
Q Consensus 187 nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~ 266 (456)
|++|+|++++|+|+|++++..|+||+|+|++|.++.+++|+||||+.+|+||+|+||+|.+|||||++|+|
T Consensus 202 nv~I~gitl~nSp~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksg--------- 272 (431)
T PLN02218 202 SLIVKNLRVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESG--------- 272 (431)
T ss_pred cEEEeCeEEEcCCCEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCC---------
Confidence 99999999999999999999999999999999999889999999999999999999999999999999997
Q ss_pred CCcccEEEEEEEEecCCCCeeEeccccc----CcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCccee
Q 012788 267 RPTTDVHIRRVLLQSSSGSSVAFGSEMS----GGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVA 342 (456)
Q Consensus 267 ~~s~ni~I~n~~~~~~~~~gi~igs~~~----~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~~ 342 (456)
++||+|+||+|. + +|||+|||++. +.|+||+|+||+|.++.+|+|||||+|++|+|+||+|+||+|+++++|
T Consensus 273 --s~nI~I~n~~c~-~-GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~p 348 (431)
T PLN02218 273 --SQNVQINDITCG-P-GHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNP 348 (431)
T ss_pred --CceEEEEeEEEE-C-CCCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCCCCeEEEEEEEEeEEEEccccc
Confidence 899999999997 4 89999999973 579999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccc-eeEEEEeeCCCCeeeEEEEeEEEEeCCCCCCcceeeeeeecc
Q 012788 343 FGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-IAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGSS 421 (456)
Q Consensus 343 i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~-~~~~~~g~~~~~~~~I~~~nv~i~~~~~~~~~~~c~~v~g~~ 421 (456)
|.|++.|+++..+...++. +.|+||+|+||+++... .++.+.|+++.||+||+|+||+++.. ...|+|+++..
T Consensus 349 I~Idq~Y~~~~~~~~~~s~-v~I~nI~~~NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~-----~~~c~n~~~~~ 422 (431)
T PLN02218 349 IIIDQDYCDKSKCTSQQSA-VQVKNVVYRNISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG-----KATCTNANVVD 422 (431)
T ss_pred EEEEeeccCCCCCCCCCCC-eEEEEEEEEeEEEEecCCcEEEEEECCCCCEeeEEEEeEEEECC-----eeeEEEeeEEE
Confidence 9999999875544333444 69999999999999764 57889999999999999999999852 46799999999
Q ss_pred ccccCCCCC
Q 012788 422 ESVFPEPCP 430 (456)
Q Consensus 422 ~~~~p~~c~ 430 (456)
..+.|+.|.
T Consensus 423 ~~~~~p~c~ 431 (431)
T PLN02218 423 KGAVSPQCN 431 (431)
T ss_pred cccCCCCCC
Confidence 887776884
No 4
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=8.2e-74 Score=576.54 Aligned_cols=357 Identities=25% Similarity=0.391 Sum_probs=311.4
Q ss_pred CCCCceEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCCceeeeeeEec------cceEEEeccCcEEEe
Q 012788 35 DPRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLT------SHLTLFLEKGAVILG 108 (456)
Q Consensus 35 ~~~~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l~L~------s~~tL~l~~ga~i~~ 108 (456)
-.++.++||+||||+|||++|||+|||+||++|| ++.||++|+||+|+|++++|.|+ ++++| +|++
T Consensus 31 ~~~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC--~~~Ggg~V~vP~G~yl~g~i~lkgpc~~~s~v~l------~L~~ 102 (404)
T PLN02188 31 GSSTFLFDVRSFGARANGHTDDSKAFMAAWKAAC--ASTGAVTLLIPPGTYYIGPVQFHGPCTNVSSLTF------TLKA 102 (404)
T ss_pred cCCceEEehhhcCcCCCCCeeCHHHHHHHHHHHh--ccCCCeEEEECCCeEEEEeEEeCCCcCcceeEEE------EEEc
Confidence 3556899999999999999999999999998653 46788999999999999999997 44444 8899
Q ss_pred cCCCCCCCcCCCCCCCCcccccCCCcceeeEEEeeeeeEEEeccCceeeCCCccccccccc--CCCCCCCCeeEEEEeec
Q 012788 109 SQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSS--QSLNYSRPHLVEFISSE 186 (456)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~--~~~~~~rp~~i~~~~~~ 186 (456)
+.+.++|+.. ..|+.+..++||+|+|. |+|||+|+.||+.... ......||++|.|.+|+
T Consensus 103 s~d~~~y~~~-----------------~~~i~~~~~~ni~I~G~-G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~ 164 (404)
T PLN02188 103 ATDLSRYGSG-----------------NDWIEFGWVNGLTLTGG-GTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMN 164 (404)
T ss_pred CCCHHHCCCc-----------------cceEEEeceeeEEEEee-EEEeCCCcccccccccccCCCCCcCceEEEEEeee
Confidence 9998888631 13566678999999996 9999999999975321 11234689999999999
Q ss_pred cEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccC
Q 012788 187 NVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYG 266 (456)
Q Consensus 187 nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~ 266 (456)
|++|+|++++|||+|++++..|++|+|++++|.++.+++|+||||+.+|+||+|+||+|.+|||||++|++
T Consensus 165 nv~i~gitl~nSp~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg--------- 235 (404)
T PLN02188 165 NTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQG--------- 235 (404)
T ss_pred eEEEeCeEEEcCCCeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccC---------
Confidence 99999999999999999999999999999999999889999999999999999999999999999999997
Q ss_pred CCcccEEEEEEEEecCCCCeeEecc----cccCcEEeEEEEeEEEECCcceEEEEecCC--CCceEEeEEEEceEecCcc
Q 012788 267 RPTTDVHIRRVLLQSSSGSSVAFGS----EMSGGISNVQVEKIHLYDSLNGIEFRTTKG--RGGYIRQIVISDAELYNIN 340 (456)
Q Consensus 267 ~~s~ni~I~n~~~~~~~~~gi~igs----~~~~~v~nI~v~n~~~~~~~~gi~iks~~g--~~g~v~nI~~~ni~~~~~~ 340 (456)
++||+|+|+.|.. +|||+||| ++.++|+||+|+||+|.++.+|+|||||.+ ++|+|+||+|+||+|++++
T Consensus 236 --~~nI~I~n~~c~~--ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~ 311 (404)
T PLN02188 236 --NSQVTITRIRCGP--GHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVT 311 (404)
T ss_pred --CccEEEEEEEEcC--CCcEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCcc
Confidence 8999999999964 79999999 566889999999999999999999999976 3589999999999999999
Q ss_pred eeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccc-eeEEEEeeCCCCeeeEEEEeEEEEeCCCC-CCcceeeeee
Q 012788 341 VAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-IAGNFTGIQEAPFANICLSNISLSINPGS-YNSWECSNIH 418 (456)
Q Consensus 341 ~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~-~~~~~~g~~~~~~~~I~~~nv~i~~~~~~-~~~~~c~~v~ 418 (456)
+||.|++.|+++..+...+...+.|+||+|+||+++... .++.+.|+++.||+||+|+||+++.++++ ...|.|+|++
T Consensus 312 ~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~ 391 (404)
T PLN02188 312 NPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVR 391 (404)
T ss_pred ceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEecCceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcce
Confidence 999999999875443222223368999999999999864 57889999999999999999999987543 3579999999
Q ss_pred eccc-cccCCCCC
Q 012788 419 GSSE-SVFPEPCP 430 (456)
Q Consensus 419 g~~~-~~~p~~c~ 430 (456)
|... .+.|++|+
T Consensus 392 g~~~g~~~p~~C~ 404 (404)
T PLN02188 392 AKYIGTQIPPPCP 404 (404)
T ss_pred eEEcccCcCCCCC
Confidence 9987 57788886
No 5
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=9.1e-73 Score=570.30 Aligned_cols=358 Identities=29% Similarity=0.518 Sum_probs=312.7
Q ss_pred CceEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCC-ceeeeeeEeccce---EEEeccCcEEEecCCCC
Q 012788 38 PHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSG-KWLTGSFNLTSHL---TLFLEKGAVILGSQNPS 113 (456)
Q Consensus 38 ~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G-~Yl~g~l~L~s~~---tL~l~~ga~i~~~~~~~ 113 (456)
+.++||++|||+|||++|||+|||+||++|| ++.+|++|+||+| +|++++|.|+++. .+.++..++|+++.. .
T Consensus 21 ~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC--~~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~~-~ 97 (456)
T PLN03003 21 SNALDVTQFGAVGDGVTDDSQAFLKAWEAVC--SGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSK-G 97 (456)
T ss_pred eeEEehhhcCCCCCCCcccHHHHHHHHHHhh--hccCCCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCcc-c
Confidence 4679999999999999999999999999964 4578999999999 5899999998743 356667788887543 3
Q ss_pred CCCcCCCCCCCCcccccCCCcceeeEEEeeeeeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeE
Q 012788 114 HWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNL 193 (456)
Q Consensus 114 ~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v 193 (456)
.|.. ....||.+.++++++|+|. |+|||+|+.||+. ...||++++|.+|+|++|+|+
T Consensus 98 ~w~~----------------~~~~wI~f~~~~~i~I~G~-GtIDGqG~~wW~~------~~~rP~~l~f~~~~nv~I~gi 154 (456)
T PLN03003 98 NWKG----------------DKDQWILFTDIEGLVIEGD-GEINGQGSSWWEH------KGSRPTALKFRSCNNLRLSGL 154 (456)
T ss_pred cccC----------------CCcceEEEEcccceEEecc-ceEeCCchhhhhc------ccCCceEEEEEecCCcEEeCe
Confidence 4531 1135899999999999997 9999999999974 246899999999999999999
Q ss_pred EEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEE
Q 012788 194 TFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVH 273 (456)
Q Consensus 194 ~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~ 273 (456)
+++|||+|++++..|++|+|++++|.++..++|+||||+.+|+||+|+||+|.+|||||++|+| ++||+
T Consensus 155 tl~NSp~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksg-----------s~NI~ 223 (456)
T PLN03003 155 THLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG-----------TSNIH 223 (456)
T ss_pred EEecCCcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCC-----------CccEE
Confidence 9999999999999999999999999999889999999999999999999999999999999997 89999
Q ss_pred EEEEEEecCCCCeeEeccccc----CcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcceeEEEeccC
Q 012788 274 IRRVLLQSSSGSSVAFGSEMS----GGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFGACGNC 349 (456)
Q Consensus 274 I~n~~~~~~~~~gi~igs~~~----~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~~i~i~~~y 349 (456)
|+||+|.. +|||+|||++. +.|+||+|+||+|.++.+|+|||||+|++|+|+||+|+||+|+++++||.|+++|
T Consensus 224 I~n~~c~~--GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y 301 (456)
T PLN03003 224 ISGIDCGP--GHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFY 301 (456)
T ss_pred EEeeEEEC--CCCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEccc
Confidence 99999974 89999999974 4599999999999999999999999998999999999999999999999999999
Q ss_pred CCCC-CC-CCCCCCCCeEEEEEEEEEEeeccc-eeEEEEeeCCCCeeeEEEEeEEEEeCC---CCCCcceeeeeeecccc
Q 012788 350 GSHP-DD-DFDPDALPAIDQITFKDIIGTNIT-IAGNFTGIQEAPFANICLSNISLSINP---GSYNSWECSNIHGSSES 423 (456)
Q Consensus 350 ~~~~-~~-~~~~~~~~~i~nIt~~nI~~~~~~-~~~~~~g~~~~~~~~I~~~nv~i~~~~---~~~~~~~c~~v~g~~~~ 423 (456)
++.. .. ...+...+.|+||+|+||+++... .++.|.|+++.||+||+|+||+|+... +....|.|+|++|....
T Consensus 302 ~~~~~~~~~~~~~s~v~IsnI~f~NI~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~ 381 (456)
T PLN03003 302 NGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTI 381 (456)
T ss_pred CCCCCCCcccCCCCCcEEEeEEEEeEEEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCc
Confidence 8532 22 112223479999999999998764 577899999999999999999998763 22357999999999887
Q ss_pred ccCC-CCCCccC
Q 012788 424 VFPE-PCPELEN 434 (456)
Q Consensus 424 ~~p~-~c~~~~~ 434 (456)
+.|+ +|+++..
T Consensus 382 ~~~~~~C~~~~~ 393 (456)
T PLN03003 382 AVPGLECLELST 393 (456)
T ss_pred eECCCCccccCC
Confidence 6554 8998754
No 6
>PLN03010 polygalacturonase
Probab=100.00 E-value=2.2e-72 Score=564.75 Aligned_cols=348 Identities=25% Similarity=0.417 Sum_probs=308.9
Q ss_pred CCceEEEeecCccCCCCCchHHHHHHHHHHhhccccCC--CcEEEecCC-ceeeeeeEecc-----ceEEEeccCcEEEe
Q 012788 37 RPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKG--GAQLYVPSG-KWLTGSFNLTS-----HLTLFLEKGAVILG 108 (456)
Q Consensus 37 ~~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~g--g~~v~iP~G-~Yl~g~l~L~s-----~~tL~l~~ga~i~~ 108 (456)
.+.++||+||||+|||++|||+|||+||++|| ..+ +++|+||+| +|++++|.|++ +++|+++ |+|++
T Consensus 43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac---~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~--G~l~~ 117 (409)
T PLN03010 43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATC---GGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLD--GIIVA 117 (409)
T ss_pred CCcEEeeeecCcCCCCCcccHHHHHHHHHHHc---cCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEc--cEEEc
Confidence 44789999999999999999999999999863 233 379999999 79999999995 6777776 89999
Q ss_pred cCCCCCCCcCCCCCCCCcccccCCCcceeeEEEeeeeeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccE
Q 012788 109 SQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENV 188 (456)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv 188 (456)
+.+..+|+.. ....|+.+.+++|++|+|. |+|||+|+.||. +++|.+|+|+
T Consensus 118 ~~d~~~w~~~---------------~~~~wi~f~~v~nv~I~G~-G~IDG~G~~ww~-------------~l~~~~~~nv 168 (409)
T PLN03010 118 PSNIVAWSNP---------------KSQMWISFSTVSGLMIDGS-GTIDGRGSSFWE-------------ALHISKCDNL 168 (409)
T ss_pred cCChhhccCC---------------CCcceEEEecccccEEeec-eEEeCCCccccc-------------eEEEEeecCe
Confidence 9999888631 1134788899999999997 999999999996 4899999999
Q ss_pred EEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCC
Q 012788 189 VVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRP 268 (456)
Q Consensus 189 ~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~ 268 (456)
+|++++++|+|+|++++..|++++|++++|.++..++|+||||+.+|++|+|+||+|.++||||++|++
T Consensus 169 ~v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksg----------- 237 (409)
T PLN03010 169 TINGITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSG----------- 237 (409)
T ss_pred EEeeeEEEcCCceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCC-----------
Confidence 999999999999999999999999999999999889999999999999999999999999999999997
Q ss_pred cccEEEEEEEEecCCCCeeEecccccCc----EEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcceeEE
Q 012788 269 TTDVHIRRVLLQSSSGSSVAFGSEMSGG----ISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFG 344 (456)
Q Consensus 269 s~ni~I~n~~~~~~~~~gi~igs~~~~~----v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~~i~ 344 (456)
+.|+.|+++.|.. +|||+|||++.++ |+||+|+||+|.++.+|+|||+|+|++|+|+||+|+||+|+++++||.
T Consensus 238 s~ni~I~~~~C~~--gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~ 315 (409)
T PLN03010 238 SSNINITQINCGP--GHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNPII 315 (409)
T ss_pred CCcEEEEEEEeEC--cCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEEeEEEecCCccEE
Confidence 7899999999974 8999999996543 999999999999999999999999989999999999999999999999
Q ss_pred EeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccc-eeEEEEeeCCCCeeeEEEEeEEEEeCCCCCCcceeeeeeecccc
Q 012788 345 ACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-IAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGSSES 423 (456)
Q Consensus 345 i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~-~~~~~~g~~~~~~~~I~~~nv~i~~~~~~~~~~~c~~v~g~~~~ 423 (456)
|++.|++.......+...+.|+||+|+||+++... .++.|.|++..||+||+|+||+++.++++++.+.|.|+++....
T Consensus 316 I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~~~~~~C~nv~g~~~~ 395 (409)
T PLN03010 316 IDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNENAITLKCSAITHCKDVVMDDIDVTMENGEKPKVECQNVEGESSD 395 (409)
T ss_pred EEeeccCCCCCCCCCCCceEEEeEEEEeeEEEeCCCccEEEEeCCCCCEeceEEEEEEEEecCCCccceEeeCccccccC
Confidence 99999874332223334469999999999999654 58899999999999999999999988766678999999998765
Q ss_pred -ccCCCCCC
Q 012788 424 -VFPEPCPE 431 (456)
Q Consensus 424 -~~p~~c~~ 431 (456)
+.|++|++
T Consensus 396 ~~~~~~C~~ 404 (409)
T PLN03010 396 TDLMRDCFK 404 (409)
T ss_pred CCCCCcccc
Confidence 55777984
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=2.3e-56 Score=443.54 Aligned_cols=312 Identities=32% Similarity=0.516 Sum_probs=264.6
Q ss_pred ccCCCcEEEecCCceeeeeeEec----cceEEEeccCcEEEecCCCCCCCcCCCCCCCCcccccCCCcceeeEEEeeeee
Q 012788 71 ADKGGAQLYVPSGKWLTGSFNLT----SHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRD 146 (456)
Q Consensus 71 ~~~gg~~v~iP~G~Yl~g~l~L~----s~~tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~n 146 (456)
++.++++|+||+|+|+++++.|+ +++++.|+ +++.++.....++ . ..||++.+++|
T Consensus 2 ~~~~~~~v~vP~g~~~~~~~~l~~~l~~~~~~~l~--G~~~~~~~~~~~~-----------------~-~~~i~~~~~~n 61 (326)
T PF00295_consen 2 SSIGGGTVVVPAGTYLLGPLFLKSTLHSDVGLTLD--GTINFSYDNWEGP-----------------N-SALIYAENAEN 61 (326)
T ss_dssp SEEEEESEEESTSTEEEEETSEETECETTCEEEEE--SEEEEG-EESTSE-------------------SEEEEEESEEE
T ss_pred cCCcCCEEEECCCCeEEceeEEEcccCCCeEEEEE--EEEEeCCCcccCC-----------------c-cEEEEEEceEE
Confidence 45677899999999999999998 56666665 5555552222221 1 47899999999
Q ss_pred EEEeccCceeeCCCccccccccc-CCCCCCCCeeEEEEeeccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCC
Q 012788 147 VVVTGDNGTIDGQGSVWWDWFSS-QSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESP 225 (456)
Q Consensus 147 i~I~G~~GtidG~g~~ww~~~~~-~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~ 225 (456)
++|+|. |+|||+|+.||+.... ......||+++.|.+|+|++|++++++|+|+|++++.+|++++|++++|.++...+
T Consensus 62 i~i~G~-G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~ 140 (326)
T PF00295_consen 62 ITITGK-GTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSP 140 (326)
T ss_dssp EECTTS-SEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCT
T ss_pred EEecCC-ceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCC
Confidence 999997 9999999999986543 13346799999999999999999999999999999999999999999999988889
Q ss_pred CCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccC----cEEeEE
Q 012788 226 YTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSG----GISNVQ 301 (456)
Q Consensus 226 n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~----~v~nI~ 301 (456)
|+|||++.+|+||+|+||+|.++||||++|++ ..||+|+||+|.. +||++|||++.+ .|+||+
T Consensus 141 NtDGid~~~s~nv~I~n~~i~~gDD~Iaiks~-----------~~ni~v~n~~~~~--ghGisiGS~~~~~~~~~i~nV~ 207 (326)
T PF00295_consen 141 NTDGIDIDSSKNVTIENCFIDNGDDCIAIKSG-----------SGNILVENCTCSG--GHGISIGSEGSGGSQNDIRNVT 207 (326)
T ss_dssp S--SEEEESEEEEEEESEEEESSSESEEESSE-----------ECEEEEESEEEES--SSEEEEEEESSSSE--EEEEEE
T ss_pred CcceEEEEeeeEEEEEEeecccccCccccccc-----------ccceEEEeEEEec--cccceeeeccCCccccEEEeEE
Confidence 99999999999999999999999999999996 5699999999985 799999999865 499999
Q ss_pred EEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccc-e
Q 012788 302 VEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-I 380 (456)
Q Consensus 302 v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~-~ 380 (456)
|+||+|.++.+|++||++++++|.|+||+|+||+|+++++||.|++.|.+...+ ..+...+.|+||+|+||+++... .
T Consensus 208 ~~n~~i~~t~~gi~iKt~~~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~-~~~~~~~~i~nI~~~nitg~~~~~~ 286 (326)
T PF00295_consen 208 FENCTIINTDNGIRIKTWPGGGGYVSNITFENITMENVKYPIFIDQDYRDGGPC-GKPPSGVSISNITFRNITGTSAGSS 286 (326)
T ss_dssp EEEEEEESESEEEEEEEETTTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEES-SCSSSSSEEEEEEEEEEEEEESTSE
T ss_pred EEEEEeeccceEEEEEEecccceEEeceEEEEEEecCCceEEEEEecccccccc-CcccCCceEEEEEEEeeEEEeccce
Confidence 999999999999999999988999999999999999999999999998873222 22333468999999999999886 6
Q ss_pred eEEEEeeCCCCeeeEEEEeEEEEeCCCCCCcceeeeeeec
Q 012788 381 AGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGS 420 (456)
Q Consensus 381 ~~~~~g~~~~~~~~I~~~nv~i~~~~~~~~~~~c~~v~g~ 420 (456)
++.+.|.++.||+||+|+||+|+. . ...+.|+|+...
T Consensus 287 ~i~i~~~~~~~~~ni~f~nv~i~~-g--~~~~~c~nv~~~ 323 (326)
T PF00295_consen 287 AISIDCSPGSPCSNITFENVNITG-G--KKPAQCKNVPSG 323 (326)
T ss_dssp EEEEE-BTTSSEEEEEEEEEEEES-S--BSESEEBSCCTT
T ss_pred EEEEEECCcCcEEeEEEEeEEEEc-C--CcCeEEECCCCC
Confidence 889999999999999999999998 2 457999998743
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=6.4e-48 Score=394.48 Aligned_cols=301 Identities=33% Similarity=0.553 Sum_probs=255.8
Q ss_pred CCCceEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCCceeeeeeEeccceEEEeccCcEEEecCCCCCC
Q 012788 36 PRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHW 115 (456)
Q Consensus 36 ~~~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l~L~s~~tL~l~~ga~i~~~~~~~~~ 115 (456)
+....++|++|||+|||.+++++|||+||++| ++++|++|+||+|+|+.++|+|||+++|++++|+||+++.++.+|
T Consensus 78 ~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~~c---a~a~Gg~V~lPaGtylsg~l~LKS~~~L~l~egatl~~~~~p~~y 154 (542)
T COG5434 78 ATDTAFSVSDDGAVGDGATDNTAAIQAAIDAC---ASAGGGTVLLPAGTYLSGPLFLKSNVTLHLAEGATLLASSNPKDY 154 (542)
T ss_pred cccceeeeccccccccCCccCHHHHHHHHHhh---hhhcCceEEECCceeEeeeEEEecccEEEecCCceeeCCCChhhc
Confidence 44568999999999999999999999999999 567999999999999999999999999999999999999999999
Q ss_pred Cc--------CCCC---------CCCCcccccCCCcceeeEEEeeeeeEE-EeccCceeeCCC----cccccccc--cCC
Q 012788 116 DV--------VDPL---------PSYGRGIELPGRRYKSLINGYMLRDVV-VTGDNGTIDGQG----SVWWDWFS--SQS 171 (456)
Q Consensus 116 ~~--------~~~~---------~~~~~g~~~~~~~~~~~i~~~~~~ni~-I~G~~GtidG~g----~~ww~~~~--~~~ 171 (456)
+. ..++ ..+++| +... +..++.....+|.. |.|. |+++|++ ..||.... ...
T Consensus 155 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~g--~~d~-~~~~~~~~~~~n~~~i~g~-~~i~g~~~~~g~~~~~~~g~~~~~ 230 (542)
T COG5434 155 PSFTSRFNGNSGPYVYATDSDNAMISGEG--LADG-KADLLIAGNSSNRKEIWGK-GTIDGNGYKRGDKWFSGLGAVETR 230 (542)
T ss_pred cccccccccccCcceeeecccCceeeeec--cccc-CcccceeccCCceEEEecc-ceecCccccchhhhhhcccchhhc
Confidence 84 1110 011112 1112 23344444556666 8996 9999965 22775443 112
Q ss_pred CCC--CCCeeEEEEeeccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCC
Q 012788 172 LNY--SRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGH 249 (456)
Q Consensus 172 ~~~--~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gD 249 (456)
... .||..+.+..|.||+++|++|.|++.|.+|+..|+|++++|++|.+.... |+||+++.+|+||+|++|+|.+||
T Consensus 231 i~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtgD 309 (542)
T COG5434 231 IGGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGD 309 (542)
T ss_pred ccccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecCC
Confidence 222 68999999999999999999999999999999999999999999998655 999999999999999999999999
Q ss_pred ceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeE
Q 012788 250 DAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQI 329 (456)
Q Consensus 250 D~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI 329 (456)
|||++|+|....+.....+++||+|+||++... ..++.+|||+.++|+||++|||.|.++.+|+|||+..+++|.++||
T Consensus 310 D~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~g-hG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~gG~v~nI 388 (542)
T COG5434 310 DCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSG-HGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRGGGVRNI 388 (542)
T ss_pred ceEEeecccCCcccccccccccEEEecceeccc-ccceEeeeecCCceeEEEEEeeeeccCcceeeeeeecccceeEEEE
Confidence 999999997777667788999999999999976 7788899999999999999999999999999999999999999999
Q ss_pred EEEceEecCcceeEEE
Q 012788 330 VISDAELYNINVAFGA 345 (456)
Q Consensus 330 ~~~ni~~~~~~~~i~i 345 (456)
+|++++|.++..+..+
T Consensus 389 ~~~~~~~~nv~t~~~i 404 (542)
T COG5434 389 VFEDNKMRNVKTKLSI 404 (542)
T ss_pred EEecccccCcccceee
Confidence 9999999998654444
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.95 E-value=6.6e-27 Score=232.53 Aligned_cols=166 Identities=20% Similarity=0.194 Sum_probs=128.3
Q ss_pred CceEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCCceeeeeeEeccceEEEeccCcEEEecCCCCCCCc
Q 012788 38 PHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDV 117 (456)
Q Consensus 38 ~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l~L~s~~tL~l~~ga~i~~~~~~~~~~~ 117 (456)
...+|+++|||++||++|+|+|||+||++| ++++++|.+|+|+|+.++|.|+++++|..+++++...-..
T Consensus 35 ~r~~dv~~fGa~~dG~td~T~ALQaAIdaA----a~gG~tV~Lp~G~Y~~G~L~L~spltL~G~~gAt~~vIdG------ 104 (455)
T TIGR03808 35 TLGRDATQYGVRPNSPDDQTRALQRAIDEA----ARAQTPLALPPGVYRTGPLRLPSGAQLIGVRGATRLVFTG------ 104 (455)
T ss_pred ccCCCHHHcCcCCCCcchHHHHHHHHHHHh----hcCCCEEEECCCceecccEEECCCcEEEecCCcEEEEEcC------
Confidence 344999999999999999999999999987 3467899999999999999999999999998886221000
Q ss_pred CCCCCCCCcccccCCCcceeeEEEeeeeeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEe
Q 012788 118 VDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLN 197 (456)
Q Consensus 118 ~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~n 197 (456)
. ..++...+.++|+|+| -+|+|+|..| ..++.+|.+..|++++|++++|++
T Consensus 105 ----------------~-~~lIiai~A~nVTIsG--LtIdGsG~dl----------~~rdAgI~v~~a~~v~Iedn~L~g 155 (455)
T TIGR03808 105 ----------------G-PSLLSSEGADGIGLSG--LTLDGGGIPL----------PQRRGLIHCQGGRDVRITDCEITG 155 (455)
T ss_pred ----------------C-ceEEEEecCCCeEEEe--eEEEeCCCcc----------cCCCCEEEEccCCceEEEeeEEEc
Confidence 0 2467778899999999 5999999755 246789999999999999999999
Q ss_pred CCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEec
Q 012788 198 APAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAM 247 (456)
Q Consensus 198 s~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~ 247 (456)
+..|++.+..|+ ..|.+.+|.... ..+|+++.+++++|++++|+.
T Consensus 156 sg~FGI~L~~~~-~~I~~N~I~g~~----~~~I~lw~S~g~~V~~N~I~g 200 (455)
T TIGR03808 156 SGGNGIWLETVS-GDISGNTITQIA----VTAIVSFDALGLIVARNTIIG 200 (455)
T ss_pred CCcceEEEEcCc-ceEecceEeccc----cceEEEeccCCCEEECCEEEc
Confidence 999999999999 444444444321 223555555555555555444
No 10
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.89 E-value=1.1e-21 Score=184.68 Aligned_cols=220 Identities=29% Similarity=0.405 Sum_probs=127.5
Q ss_pred eEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCCceeee-eeEeccceEEEeccC-cEEEe-cCCCCCCC
Q 012788 40 SVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTG-SFNLTSHLTLFLEKG-AVILG-SQNPSHWD 116 (456)
Q Consensus 40 ~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g-~l~L~s~~tL~l~~g-a~i~~-~~~~~~~~ 116 (456)
.+||++|||+|||++|||+|||+||+++ +++++++|+||+|+|++. +|.++++++|+++.+ .+++. ......+.
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~---~~~~g~~v~~P~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~ 77 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAA---AAAGGGVVYFPPGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFS 77 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHH---CSTTSEEEEE-SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSC
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhc---ccCCCeEEEEcCcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccc
Confidence 4799999999999999999999999666 468999999999999998 499999999999766 33333 22222221
Q ss_pred cCCCCCCCCcccccCCCcceeeEEEeeeeeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEE
Q 012788 117 VVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFL 196 (456)
Q Consensus 117 ~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ 196 (456)
.. .+..... ...+.+. ..++|++|.|. .... ......+.+..++++.|+++++.
T Consensus 78 ~~-------~~~~~~~-~~~~~~~-~~i~nl~i~~~-------~~~~----------~~~~~~i~~~~~~~~~i~nv~~~ 131 (225)
T PF12708_consen 78 VV-------PGIGVFD-SGNSNIG-IQIRNLTIDGN-------GIDP----------NNNNNGIRFNSSQNVSISNVRIE 131 (225)
T ss_dssp CE-------EEEEECC-SCSCCEE-EEEEEEEEEET-------CGCE-----------SCEEEEEETTEEEEEEEEEEEE
T ss_pred cc-------cceeeee-cCCCCce-EEEEeeEEEcc-------cccC----------CCCceEEEEEeCCeEEEEeEEEE
Confidence 00 0000000 0000000 12555666663 2111 00135678888889999999998
Q ss_pred eCCcceEEeecccceEEEEEEEECCCCCCCCceeeecC-ccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEE
Q 012788 197 NAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDS-SDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIR 275 (456)
Q Consensus 197 ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~-s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~ 275 (456)
|+...++.+..++...+.+.... .++.+.. +.++.+.++.+..+++++.. + .+++.++
T Consensus 132 ~~~~~~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~-----------~~~~~i~ 190 (225)
T PF12708_consen 132 NSGGDGIYFNTGTDYRIIGSTHV--------SGIFIDNGSNNVIVNNCIFNGGDNGIIL--G-----------NNNITIS 190 (225)
T ss_dssp S-SS-SEEEECCEECEEECCEEE--------EEEEEESCEEEEEEECEEEESSSCSEEC--E-----------EEEEEEE
T ss_pred ccCccEEEEEccccCcEeecccc--------eeeeeccceeEEEECCccccCCCceeEe--e-----------cceEEEE
Confidence 88777777765554444332221 1333332 24456677777776666321 1 3677777
Q ss_pred EEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceE
Q 012788 276 RVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGI 314 (456)
Q Consensus 276 n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi 314 (456)
||++......||.+... .++.++|++|.++..|+
T Consensus 191 n~~~~~~~~~gi~i~~~-----~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 191 NNTFEGNCGNGINIEGG-----SNIIISNNTIENCDDGI 224 (225)
T ss_dssp CEEEESSSSESEEEEEC-----SEEEEEEEEEESSSEEE
T ss_pred eEEECCccceeEEEECC-----eEEEEEeEEEECCccCc
Confidence 77776533566666532 23666666666666554
No 11
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.85 E-value=4.9e-19 Score=179.95 Aligned_cols=212 Identities=16% Similarity=0.190 Sum_probs=168.9
Q ss_pred eeEEEEeeccEEEEeEEEEeCC---cc--------eEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEe
Q 012788 178 HLVEFISSENVVVSNLTFLNAP---AY--------NIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIA 246 (456)
Q Consensus 178 ~~i~~~~~~nv~I~~v~i~ns~---~~--------~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~ 246 (456)
..|.|.+.+|++|.|--..+.. .| .+.+.+|+|++|+++++.+++. -.+++..|++|+|++.+|.
T Consensus 105 ~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~----w~i~i~~c~nV~i~~l~I~ 180 (456)
T PLN03003 105 QWILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPM----AHIHISECNYVTISSLRIN 180 (456)
T ss_pred ceEEEEcccceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCc----EEEEEeccccEEEEEEEEe
Confidence 4799999999999995555432 22 5789999999999999998763 3588899999999999998
Q ss_pred c-----CCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceEEEEecCC
Q 012788 247 M-----GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKG 321 (456)
Q Consensus 247 ~-----gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~iks~~g 321 (456)
+ .-|||.+.+ ++||+|+||++... +++|+|++ +.+||+|+||++.. .+|+.|.+...
T Consensus 181 ap~~spNTDGIDi~~------------S~nV~I~n~~I~tG-DDCIaiks----gs~NI~I~n~~c~~-GHGISIGSlg~ 242 (456)
T PLN03003 181 APESSPNTDGIDVGA------------SSNVVIQDCIIATG-DDCIAINS----GTSNIHISGIDCGP-GHGISIGSLGK 242 (456)
T ss_pred CCCCCCCCCcEeecC------------cceEEEEecEEecC-CCeEEeCC----CCccEEEEeeEEEC-CCCeEEeeccC
Confidence 6 457888776 89999999999987 99999996 45899999999976 58999999742
Q ss_pred C--CceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccceeEEE---EeeC--------
Q 012788 322 R--GGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNF---TGIQ-------- 388 (456)
Q Consensus 322 ~--~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~~---~g~~-------- 388 (456)
. .+.|+||+++|+++.+..++++|+.+.+ +.+.++||+|+||++.+...|+.+ +|..
T Consensus 243 ~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~G----------g~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~ 312 (456)
T PLN03003 243 DGETATVENVCVQNCNFRGTMNGARIKTWQG----------GSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDR 312 (456)
T ss_pred CCCcceEEEEEEEeeEEECCCcEEEEEEeCC----------CCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccC
Confidence 2 2579999999999999999999998633 235899999999999999888876 2210
Q ss_pred ---CCCeeeEEEEeEEEEeCCCCC------Ccceeeeeeecc
Q 012788 389 ---EAPFANICLSNISLSINPGSY------NSWECSNIHGSS 421 (456)
Q Consensus 389 ---~~~~~~I~~~nv~i~~~~~~~------~~~~c~~v~g~~ 421 (456)
...++||+|+||+-+...... ...-|+|+.-..
T Consensus 313 ~~s~v~IsnI~f~NI~GTs~~~~ai~l~Cs~~~PC~nI~l~n 354 (456)
T PLN03003 313 KSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRD 354 (456)
T ss_pred CCCCcEEEeEEEEeEEEEeCccceEEEEeCCCCCeeeEEEEE
Confidence 125799999999987654321 233466666443
No 12
>PLN02218 polygalacturonase ADPG
Probab=99.85 E-value=2.1e-19 Score=183.14 Aligned_cols=215 Identities=15% Similarity=0.225 Sum_probs=169.3
Q ss_pred eeEEEEeeccEEEEe---EEEEeCC-------------------cceEEeecccceEEEEEEEECCCCCCCCceeeecCc
Q 012788 178 HLVEFISSENVVVSN---LTFLNAP-------------------AYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSS 235 (456)
Q Consensus 178 ~~i~~~~~~nv~I~~---v~i~ns~-------------------~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s 235 (456)
..+.+.+.+|++|+| -+|.... -..+.+.+|+|++|+++++.+++. -.+++..|
T Consensus 148 ~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~----w~i~~~~~ 223 (431)
T PLN02218 148 KWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQ----IQISIEKC 223 (431)
T ss_pred cCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCC----EEEEEEce
Confidence 358888999999998 4443211 124678899999999999999763 35889999
Q ss_pred cCEEEEecEEec-----CCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECC
Q 012788 236 DNVCIEDCIIAM-----GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDS 310 (456)
Q Consensus 236 ~nV~I~n~~i~~-----gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~ 310 (456)
+||+|+|.+|.+ +-|||.+.+ ++||+|+||++... +++|+|++ +.+||+|+||++..
T Consensus 224 ~nV~i~~v~I~a~~~spNTDGIdi~s------------s~nV~I~n~~I~tG-DDcIaIks----gs~nI~I~n~~c~~- 285 (431)
T PLN02218 224 SNVQVSNVVVTAPADSPNTDGIHITN------------TQNIRVSNSIIGTG-DDCISIES----GSQNVQINDITCGP- 285 (431)
T ss_pred eeEEEEEEEEeCCCCCCCCCcEeecc------------cceEEEEccEEecC-CceEEecC----CCceEEEEeEEEEC-
Confidence 999999999986 468888876 89999999999987 99999996 46899999999965
Q ss_pred cceEEEEecCCC--CceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccceeEEEEeeC
Q 012788 311 LNGIEFRTTKGR--GGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQ 388 (456)
Q Consensus 311 ~~gi~iks~~g~--~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~~~g~~ 388 (456)
.+|+.|.+.... .+.|+||+++|+++.+..++++|+.+.+ +.+.++||+|+||++.+...|+.+....
T Consensus 286 GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~G----------g~G~v~nI~f~ni~m~~V~~pI~Idq~Y 355 (431)
T PLN02218 286 GHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQG----------GSGTASNIIFQNIQMENVKNPIIIDQDY 355 (431)
T ss_pred CCCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCC----------CCeEEEEEEEEeEEEEcccccEEEEeec
Confidence 589999987422 3689999999999999999999997532 3368999999999999998887763211
Q ss_pred -----------CCCeeeEEEEeEEEEeCCCCC------Ccceeeeeeeccccc
Q 012788 389 -----------EAPFANICLSNISLSINPGSY------NSWECSNIHGSSESV 424 (456)
Q Consensus 389 -----------~~~~~~I~~~nv~i~~~~~~~------~~~~c~~v~g~~~~~ 424 (456)
...++||+|+||+.+.+.... +..-|+|+.-....+
T Consensus 356 ~~~~~~~~~~s~v~I~nI~~~NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i 408 (431)
T PLN02218 356 CDKSKCTSQQSAVQVKNVVYRNISGTSASDVAITFNCSKNYPCQGIVLDNVNI 408 (431)
T ss_pred cCCCCCCCCCCCeEEEEEEEEeEEEEecCCcEEEEEECCCCCEeeEEEEeEEE
Confidence 124899999999998764321 234466666554443
No 13
>PLN02793 Probable polygalacturonase
Probab=99.84 E-value=1.3e-18 Score=178.16 Aligned_cols=214 Identities=16% Similarity=0.192 Sum_probs=168.0
Q ss_pred eeEEEEeeccEEEEeEEEEeCCc--------------------ceEEeecccceEEEEEEEECCCCCCCCceeeecCccC
Q 012788 178 HLVEFISSENVVVSNLTFLNAPA--------------------YNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDN 237 (456)
Q Consensus 178 ~~i~~~~~~nv~I~~v~i~ns~~--------------------~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~n 237 (456)
..+.+.+.+|++|.|--..+... ..+.+.+|+|++|+++++.+++ .--+++..|+|
T Consensus 135 ~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp----~~~i~~~~~~n 210 (443)
T PLN02793 135 KWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQ----QMHIAFTNCRR 210 (443)
T ss_pred eEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCC----CeEEEEEccCc
Confidence 47888899999999865544221 1467889999999999999976 33488899999
Q ss_pred EEEEecEEec-----CCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcc
Q 012788 238 VCIEDCIIAM-----GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLN 312 (456)
Q Consensus 238 V~I~n~~i~~-----gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~ 312 (456)
|+|++.+|.+ ..|||.+.+ ++||+|+||++... +++|+|++ +.+||+|+||++... +
T Consensus 211 v~i~~l~I~~p~~spNTDGIdi~~------------s~nV~I~n~~I~~g-DDcIaik~----~s~nI~I~n~~c~~G-h 272 (443)
T PLN02793 211 VTISGLKVIAPATSPNTDGIHISA------------SRGVVIKDSIVRTG-DDCISIVG----NSSRIKIRNIACGPG-H 272 (443)
T ss_pred EEEEEEEEECCCCCCCCCcEeeec------------cceEEEEeCEEeCC-CCeEEecC----CcCCEEEEEeEEeCC-c
Confidence 9999999986 458888876 89999999999987 99999985 468999999999764 7
Q ss_pred eEEEEecCC--CCceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccceeEEEEe---e
Q 012788 313 GIEFRTTKG--RGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTG---I 387 (456)
Q Consensus 313 gi~iks~~g--~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~~~g---~ 387 (456)
|+.|.+... ..+.|+||+++|+++.+..++++|+.+.+ +.+.++||+|+||++.+...|+.+.. .
T Consensus 273 GisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g----------~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~ 342 (443)
T PLN02793 273 GISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQG----------GSGNASKITFQNIFMENVSNPIIIDQYYCD 342 (443)
T ss_pred cEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCC----------CCEEEEEEEEEeEEEecCCceEEEEeeecC
Confidence 999998632 23679999999999999999999997633 23589999999999999988887632 2
Q ss_pred CC---------CCeeeEEEEeEEEEeCCCCC------Ccceeeeeeecccc
Q 012788 388 QE---------APFANICLSNISLSINPGSY------NSWECSNIHGSSES 423 (456)
Q Consensus 388 ~~---------~~~~~I~~~nv~i~~~~~~~------~~~~c~~v~g~~~~ 423 (456)
.. ..++||+|+||+-+...... ...-|+|+.-...+
T Consensus 343 ~~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~ 393 (443)
T PLN02793 343 SRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQ 393 (443)
T ss_pred CCCCCCCCCCCeEEEeEEEEEEEEEEcccccEEEEeCCCCCEeeEEEEeeE
Confidence 11 24799999999987643211 23346666654443
No 14
>PLN03010 polygalacturonase
Probab=99.84 E-value=2.3e-18 Score=173.99 Aligned_cols=237 Identities=15% Similarity=0.198 Sum_probs=176.7
Q ss_pred eeEEEeccCceeeCCCc-ccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEeCC---cc-eEEeecccceEEEEEEEE
Q 012788 145 RDVVVTGDNGTIDGQGS-VWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAP---AY-NIHPVYCSNVHIQNISVH 219 (456)
Q Consensus 145 ~ni~I~G~~GtidG~g~-~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~---~~-~i~~~~~~nv~i~n~~i~ 219 (456)
.++.+.=. |+|-+... ..|.. ......+.|.+.+|+.|.|--..+.. .| .+.+.+|+|++|+++++.
T Consensus 105 ~~v~l~l~-G~l~~~~d~~~w~~-------~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~~l~~~~~~nv~v~gitl~ 176 (409)
T PLN03010 105 TSIKVQLD-GIIVAPSNIVAWSN-------PKSQMWISFSTVSGLMIDGSGTIDGRGSSFWEALHISKCDNLTINGITSI 176 (409)
T ss_pred CcEEEEEc-cEEEccCChhhccC-------CCCcceEEEecccccEEeeceEEeCCCccccceEEEEeecCeEEeeeEEE
Confidence 35555543 66665433 22321 01234588999999999996666642 34 588999999999999999
Q ss_pred CCCCCCCCceeeecCccCEEEEecEEec-----CCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEeccccc
Q 012788 220 APPESPYTVGIVPDSSDNVCIEDCIIAM-----GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMS 294 (456)
Q Consensus 220 ~~~~~~n~DGi~~~~s~nV~I~n~~i~~-----gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~ 294 (456)
+++. --+++..|++|+|+|.+|.+ .-|||.+.+ ++||+|+||++... +++|+|++.
T Consensus 177 nsp~----~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~------------s~nV~I~n~~I~~g-DDcIaiksg-- 237 (409)
T PLN03010 177 DSPK----NHISIKTCNYVAISKINILAPETSPNTDGIDISY------------STNINIFDSTIQTG-DDCIAINSG-- 237 (409)
T ss_pred cCCc----eEEEEeccccEEEEEEEEeCCCCCCCCCceeeec------------cceEEEEeeEEecC-CCeEEecCC--
Confidence 9763 34888999999999999986 457777766 89999999999987 999999974
Q ss_pred CcEEeEEEEeEEEECCcceEEEEecCCC--CceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEE
Q 012788 295 GGISNVQVEKIHLYDSLNGIEFRTTKGR--GGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKD 372 (456)
Q Consensus 295 ~~v~nI~v~n~~~~~~~~gi~iks~~g~--~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~n 372 (456)
..++.|+++.+.. .+|+.|++.... ...|+||+|+|++|.+..++++|+.+.+ +.+.++||+|+|
T Consensus 238 --s~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G----------~~G~v~nItf~n 304 (409)
T PLN03010 238 --SSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQG----------GQGYARNISFEN 304 (409)
T ss_pred --CCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecC----------CCEEEEEeEEEe
Confidence 3567777777765 579999997432 2569999999999999999999997643 235899999999
Q ss_pred EEeeccceeEEEE---eeCC---------CCeeeEEEEeEEEEeCCCCC------Ccceeeeeeecc
Q 012788 373 IIGTNITIAGNFT---GIQE---------APFANICLSNISLSINPGSY------NSWECSNIHGSS 421 (456)
Q Consensus 373 I~~~~~~~~~~~~---g~~~---------~~~~~I~~~nv~i~~~~~~~------~~~~c~~v~g~~ 421 (456)
|++.+...|+.+. +..+ ..++||+|+||+-+...... ...-|+|+.-..
T Consensus 305 I~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~~~~i~l~Cs~~~pC~ni~~~~ 371 (409)
T PLN03010 305 ITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNENAITLKCSAITHCKDVVMDD 371 (409)
T ss_pred EEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEEeCCCccEEEEeCCCCCEeceEEEE
Confidence 9999998888763 2211 25799999999987654322 223466665443
No 15
>PLN02155 polygalacturonase
Probab=99.84 E-value=3.6e-18 Score=172.18 Aligned_cols=216 Identities=13% Similarity=0.149 Sum_probs=168.3
Q ss_pred eEEEEeeccEEEEeEEEEeCC--cc--------------eEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEe
Q 012788 179 LVEFISSENVVVSNLTFLNAP--AY--------------NIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIED 242 (456)
Q Consensus 179 ~i~~~~~~nv~I~~v~i~ns~--~~--------------~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n 242 (456)
.+.|.+.+|+.|.+=+|.... .| .+.+.+|++++|+++++.+++ .--+++..|+||+|++
T Consensus 108 wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp----~w~i~~~~~~nv~i~~ 183 (394)
T PLN02155 108 WILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQ----VSHMTLNGCTNVVVRN 183 (394)
T ss_pred eEEEECcCCCEEEccEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCC----CeEEEEECeeeEEEEE
Confidence 588889999999985553221 11 378899999999999999875 3348889999999999
Q ss_pred cEEec-----CCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceEEEE
Q 012788 243 CIIAM-----GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFR 317 (456)
Q Consensus 243 ~~i~~-----gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~ik 317 (456)
.+|.+ .-|||.+.+ ++||+|+||++... +++|+|++ +.+||+|+||++.. .+|+.|+
T Consensus 184 v~I~~p~~~~NtDGidi~~------------s~nV~I~~~~I~~g-DDcIaik~----gs~nI~I~n~~c~~-GhGisIG 245 (394)
T PLN02155 184 VKLVAPGNSPNTDGFHVQF------------STGVTFTGSTVQTG-DDCVAIGP----GTRNFLITKLACGP-GHGVSIG 245 (394)
T ss_pred EEEECCCCCCCCCcccccc------------ceeEEEEeeEEecC-CceEEcCC----CCceEEEEEEEEEC-CceEEec
Confidence 99986 237777766 89999999999987 99999986 46899999999986 4899999
Q ss_pred ecCC--CCceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccceeEEEE---eeC----
Q 012788 318 TTKG--RGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFT---GIQ---- 388 (456)
Q Consensus 318 s~~g--~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~~~---g~~---- 388 (456)
+... ..+.|+||+++|+++.+..++++|+.+... +.+.++||+|+||++.+...|+.+. |..
T Consensus 246 S~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~---------~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~ 316 (394)
T PLN02155 246 SLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARP---------STGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGC 316 (394)
T ss_pred cccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCC---------CCEEEEEEEEEeEEEcCccccEEEEecccCCCCCC
Confidence 9632 257899999999999999999999975321 2368999999999999998887762 211
Q ss_pred -----CCCeeeEEEEeEEEEeCCCCC------Ccceeeeeeecccccc
Q 012788 389 -----EAPFANICLSNISLSINPGSY------NSWECSNIHGSSESVF 425 (456)
Q Consensus 389 -----~~~~~~I~~~nv~i~~~~~~~------~~~~c~~v~g~~~~~~ 425 (456)
...++||+|+||+.+.+.... ...-|+|+.-...++.
T Consensus 317 ~~~~s~v~i~~It~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~ 364 (394)
T PLN02155 317 PNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLT 364 (394)
T ss_pred cCCCCCeEEEEEEEEeeEEEecCCceEEEEeCCCCCEEEEEEEeeEEE
Confidence 125899999999988763311 2344777765544443
No 16
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.82 E-value=2.3e-18 Score=171.37 Aligned_cols=225 Identities=21% Similarity=0.275 Sum_probs=169.8
Q ss_pred CeeEEEEeeccEEEEe-EEEEeCC-----------------cceEEeecccceEEEEEEEECCCCCCCCceeeecCccCE
Q 012788 177 PHLVEFISSENVVVSN-LTFLNAP-----------------AYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNV 238 (456)
Q Consensus 177 p~~i~~~~~~nv~I~~-v~i~ns~-----------------~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV 238 (456)
..+|.+.+++|+.|.| -+|.... ...+.+..|++++|+++++.+++. -.+++..|+||
T Consensus 51 ~~~i~~~~~~ni~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~----w~~~~~~~~nv 126 (326)
T PF00295_consen 51 SALIYAENAENITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPF----WHIHINDCDNV 126 (326)
T ss_dssp SEEEEEESEEEEECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SS----ESEEEESEEEE
T ss_pred cEEEEEEceEEEEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCCe----eEEEEEccCCe
Confidence 4578899999999998 4443211 124788999999999999999763 34888899999
Q ss_pred EEEecEEec-----CCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcce
Q 012788 239 CIEDCIIAM-----GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNG 313 (456)
Q Consensus 239 ~I~n~~i~~-----gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~g 313 (456)
+|++.+|.+ ..|||.+.+ ++||+|+||++... +++|++++.. .||+|+||++.+ .+|
T Consensus 127 ~i~~i~I~~~~~~~NtDGid~~~------------s~nv~I~n~~i~~g-DD~Iaiks~~----~ni~v~n~~~~~-ghG 188 (326)
T PF00295_consen 127 TISNITINNPANSPNTDGIDIDS------------SKNVTIENCFIDNG-DDCIAIKSGS----GNILVENCTCSG-GHG 188 (326)
T ss_dssp EEESEEEEEGGGCTS--SEEEES------------EEEEEEESEEEESS-SESEEESSEE----CEEEEESEEEES-SSE
T ss_pred EEcceEEEecCCCCCcceEEEEe------------eeEEEEEEeecccc-cCcccccccc----cceEEEeEEEec-ccc
Confidence 999999986 358888876 89999999999987 9999999754 399999999986 478
Q ss_pred EEEEecCCCC--ceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccceeEEEEe-eC--
Q 012788 314 IEFRTTKGRG--GYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTG-IQ-- 388 (456)
Q Consensus 314 i~iks~~g~~--g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~~~g-~~-- 388 (456)
+.|.+....+ ..|+||+|+|+++.+..++++|+... .+.+.|+||+|+||+++....|+.+.- +.
T Consensus 189 isiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~----------~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~ 258 (326)
T PF00295_consen 189 ISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWP----------GGGGYVSNITFENITMENVKYPIFIDQDYRDG 258 (326)
T ss_dssp EEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEET----------TTSEEEEEEEEEEEEEEEESEEEEEEEEECTT
T ss_pred ceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEec----------ccceEEeceEEEEEEecCCceEEEEEeccccc
Confidence 9999875322 36999999999999999999998753 233699999999999999887776631 11
Q ss_pred --------CCCeeeEEEEeEEEEeCCC------CCCcceeeeeeeccccc----cCCCCCCcc
Q 012788 389 --------EAPFANICLSNISLSINPG------SYNSWECSNIHGSSESV----FPEPCPELE 433 (456)
Q Consensus 389 --------~~~~~~I~~~nv~i~~~~~------~~~~~~c~~v~g~~~~~----~p~~c~~~~ 433 (456)
...++||+|+||+.+.... ..+...|+|+.-....+ .+..|.+++
T Consensus 259 ~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~g~~~~~c~nv~ 321 (326)
T PF00295_consen 259 GPCGKPPSGVSISNITFRNITGTSAGSSAISIDCSPGSPCSNITFENVNITGGKKPAQCKNVP 321 (326)
T ss_dssp EESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEESSBSESEEBSCC
T ss_pred cccCcccCCceEEEEEEEeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEcCCcCeEEECCC
Confidence 1359999999999988762 11233466666544333 234466544
No 17
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.82 E-value=8.7e-18 Score=168.88 Aligned_cols=271 Identities=20% Similarity=0.264 Sum_probs=157.7
Q ss_pred CcEEEecCCceeeee---eEeccce-EEEeccCcEEEecCCCCCCCcCCCCCCCCcccccCCCcceeeEEEeeeeeEEEe
Q 012788 75 GAQLYVPSGKWLTGS---FNLTSHL-TLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVT 150 (456)
Q Consensus 75 g~~v~iP~G~Yl~g~---l~L~s~~-tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~ 150 (456)
..+|||+||+|.++. +.|++++ +++|++||.+++. +.+....+|+.|+
T Consensus 232 ~~~lYF~PGVy~ig~~~~l~L~sn~~~VYlApGAyVkGA----------------------------f~~~~~~~nv~i~ 283 (582)
T PF03718_consen 232 KDTLYFKPGVYWIGSDYHLRLPSNTKWVYLAPGAYVKGA----------------------------FEYTDTQQNVKIT 283 (582)
T ss_dssp SSEEEE-SEEEEEBCTC-EEE-TT--EEEE-TTEEEES-----------------------------EEE---SSEEEEE
T ss_pred cceEEeCCceEEeCCCccEEECCCccEEEEcCCcEEEEE----------------------------EEEccCCceEEEE
Confidence 469999999999984 9999985 9999999987652 2223578999999
Q ss_pred ccCceeeCCCcccccccccC------CCCC--CCCeeEE---EEeeccEEEEeEEEEeCCcceEEeeccc----ceEEEE
Q 012788 151 GDNGTIDGQGSVWWDWFSSQ------SLNY--SRPHLVE---FISSENVVVSNLTFLNAPAYNIHPVYCS----NVHIQN 215 (456)
Q Consensus 151 G~~GtidG~g~~ww~~~~~~------~~~~--~rp~~i~---~~~~~nv~I~~v~i~ns~~~~i~~~~~~----nv~i~n 215 (456)
|. |++.|....|....... .... ..-+++. ...+.+++++|++|.++|+|.+.+.+.. ...|+|
T Consensus 284 G~-GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~n 362 (582)
T PF03718_consen 284 GR-GVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISN 362 (582)
T ss_dssp SS-SEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEE
T ss_pred ee-EEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeec
Confidence 97 99999887663211111 0001 1124555 3456699999999999999999998555 489999
Q ss_pred EEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCC-CCeeEeccccc
Q 012788 216 ISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSS-GSSVAFGSEMS 294 (456)
Q Consensus 216 ~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~-~~gi~igs~~~ 294 (456)
.++.... ..++|||.+. ++-+|+||++++.||+|.+. -+++.|+||++|... +.-+.+|.. .
T Consensus 363 yKqVGaW-~~qtDGi~ly--~nS~i~dcF~h~nDD~iKlY-------------hS~v~v~~~ViWk~~Ngpiiq~GW~-p 425 (582)
T PF03718_consen 363 YKQVGAW-YFQTDGIELY--PNSTIRDCFIHVNDDAIKLY-------------HSNVSVSNTVIWKNENGPIIQWGWT-P 425 (582)
T ss_dssp EEEE----CTT----B----TT-EEEEEEEEESS-SEE---------------STTEEEEEEEEEE-SSS-SEE--CS--
T ss_pred eeeeeeE-EeccCCcccc--CCCeeeeeEEEecCchhhee-------------ecCcceeeeEEEecCCCCeEEeecc-c
Confidence 9999865 4589999996 67788999999999999664 389999999999752 233444433 3
Q ss_pred CcEEeEEEEeEEEECC---------cceEEEEecCC----C------CceEEeEEEEceEecCcc-eeEEEeccCCCCCC
Q 012788 295 GGISNVQVEKIHLYDS---------LNGIEFRTTKG----R------GGYIRQIVISDAELYNIN-VAFGACGNCGSHPD 354 (456)
Q Consensus 295 ~~v~nI~v~n~~~~~~---------~~gi~iks~~g----~------~g~v~nI~~~ni~~~~~~-~~i~i~~~y~~~~~ 354 (456)
..+.||.|+|+.+.++ ..+|...+..- . .-.|++++|+|+++++.- ..+.|...
T Consensus 426 r~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~pl------ 499 (582)
T PF03718_consen 426 RNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYPL------ 499 (582)
T ss_dssp --EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE--S------
T ss_pred cccCceEEeeeEEEeeeeecccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEeec------
Confidence 5699999999999876 23444433211 1 135899999999999854 44556421
Q ss_pred CCCCCCCCCeEEEEEEEEEEee-----ccc--e-eEE-EEee---CCCCeeeEEEEeEEEEeC
Q 012788 355 DDFDPDALPAIDQITFKDIIGT-----NIT--I-AGN-FTGI---QEAPFANICLSNISLSIN 405 (456)
Q Consensus 355 ~~~~~~~~~~i~nIt~~nI~~~-----~~~--~-~~~-~~g~---~~~~~~~I~~~nv~i~~~ 405 (456)
.-.+|+.++|+... ... + -.. ..+. ......+|.|+|.++.++
T Consensus 500 --------qn~~nl~ikN~~~~~w~~~~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg~ 554 (582)
T PF03718_consen 500 --------QNYDNLVIKNVHFESWNGLDITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGGE 554 (582)
T ss_dssp --------EEEEEEEEEEEEECEET-CGCSTT-EEE---CCTTT--B--EEEEEEEEEEETTE
T ss_pred --------CCCcceEEEEeecccccCcccccceeeccccccccccccccccceEEEeEEECCE
Confidence 12344555555544 111 1 111 1111 234578999999998654
No 18
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.80 E-value=1.9e-17 Score=167.69 Aligned_cols=216 Identities=16% Similarity=0.182 Sum_probs=166.3
Q ss_pred eEEEEeeccEEEEeEEEEeCC---cc----------------eEEeecccceEEEEEEEECCCCCCCCceeeecCccCEE
Q 012788 179 LVEFISSENVVVSNLTFLNAP---AY----------------NIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVC 239 (456)
Q Consensus 179 ~i~~~~~~nv~I~~v~i~ns~---~~----------------~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~ 239 (456)
.+.|.+++|++|.|--..|.. .| .+.+.+|++++|+++++.+++. -.+++..|++|+
T Consensus 115 ~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~----w~i~~~~~~~v~ 190 (404)
T PLN02188 115 WIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKF----FHIALVECRNFK 190 (404)
T ss_pred eEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCC----eEEEEEccccEE
Confidence 466777889999885554432 12 3578899999999999999763 458899999999
Q ss_pred EEecEEec-----CCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceE
Q 012788 240 IEDCIIAM-----GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGI 314 (456)
Q Consensus 240 I~n~~i~~-----gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi 314 (456)
|++.+|.+ .-|||.+.+ ++||+|+||++... +++|+|++. .+||+|+|+++.. .+|+
T Consensus 191 i~~v~I~~~~~spNtDGidi~~------------s~nV~I~n~~I~~G-DDcIaiksg----~~nI~I~n~~c~~-ghGi 252 (404)
T PLN02188 191 GSGLKISAPSDSPNTDGIHIER------------SSGVYISDSRIGTG-DDCISIGQG----NSQVTITRIRCGP-GHGI 252 (404)
T ss_pred EEEEEEeCCCCCCCCCcEeeeC------------cccEEEEeeEEeCC-CcEEEEccC----CccEEEEEEEEcC-CCcE
Confidence 99999986 458888876 89999999999987 999999864 4799999999965 4899
Q ss_pred EEEecC--CCCceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccceeEEEE---ee--
Q 012788 315 EFRTTK--GRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFT---GI-- 387 (456)
Q Consensus 315 ~iks~~--g~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~~~---g~-- 387 (456)
.|.+.. +..+.|+||+|+|+++.+..++++|+.+.+. + +.+.++||+|+||++.+...|+.+. |.
T Consensus 253 siGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~-------~-~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~ 324 (404)
T PLN02188 253 SVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANS-------P-GKSAATNMTFENIVMNNVTNPIIIDQKYCPFY 324 (404)
T ss_pred EeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCC-------C-CceEEEEEEEEeEEecCccceEEEEccccCCC
Confidence 998853 1246699999999999999999999975332 1 1258999999999999988887763 21
Q ss_pred -------CCCCeeeEEEEeEEEEeCCCCC------Ccceeeeeeeccccc
Q 012788 388 -------QEAPFANICLSNISLSINPGSY------NSWECSNIHGSSESV 424 (456)
Q Consensus 388 -------~~~~~~~I~~~nv~i~~~~~~~------~~~~c~~v~g~~~~~ 424 (456)
....++||+|+||+-+...... ...-|+|+.-...++
T Consensus 325 ~~~~~~~s~v~I~nIt~~nI~gt~~~~~a~~l~cs~~~pc~ni~~~nV~i 374 (404)
T PLN02188 325 SCESKYPSGVTLSDIYFKNIRGTSSSQVAVLLKCSRGVPCQGVYLQDVHL 374 (404)
T ss_pred CCCcCCCCCcEEEeEEEEEEEEEecCceEEEEEECCCCCEeeEEEEeeEE
Confidence 1135899999999987754311 223466666544443
No 19
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.67 E-value=6.7e-15 Score=145.39 Aligned_cols=196 Identities=17% Similarity=0.222 Sum_probs=135.9
Q ss_pred HHHHHHHhhccccCCCcEEEecCCceee-eeeEec-cceEEEeccCcEEEecCCCCCCCcCCCCCCCCcccccCCCccee
Q 012788 60 FQNAIFYLKSFADKGGAQLYVPSGKWLT-GSFNLT-SHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKS 137 (456)
Q Consensus 60 iq~Ai~~a~~~~~~gg~~v~iP~G~Yl~-g~l~L~-s~~tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 137 (456)
||+|+++| +.|.+|+||+|+|.+ ++|.+. ++++|..+..
T Consensus 1 iQ~Ai~~A-----~~GDtI~l~~G~Y~~~~~l~I~~~~Iti~G~g~---------------------------------- 41 (314)
T TIGR03805 1 LQEALIAA-----QPGDTIVLPEGVFQFDRTLSLDADGVTIRGAGM---------------------------------- 41 (314)
T ss_pred CHhHHhhC-----CCCCEEEECCCEEEcceeEEEeCCCeEEEecCC----------------------------------
Confidence 69999987 678999999999975 567775 5666654311
Q ss_pred eEEEeeeeeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEeCCcceEEeecccceEEEEEE
Q 012788 138 LINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNIS 217 (456)
Q Consensus 138 ~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~ 217 (456)
+.. +||+.++. .....+ ...+++|+|++++++++..+++.+..|++++|++++
T Consensus 42 -------~~t-------vid~~~~~------------~~~~~i-~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~ 94 (314)
T TIGR03805 42 -------DET-------ILDFSGQV------------GGAEGL-LVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLR 94 (314)
T ss_pred -------Ccc-------EEecccCC------------CCCceE-EEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeE
Confidence 001 12211110 001123 335788999999999988888988899999999998
Q ss_pred EECCCC---CCCCceeeecCccCEEEEecEEec-CCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccc
Q 012788 218 VHAPPE---SPYTVGIVPDSSDNVCIEDCIIAM-GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEM 293 (456)
Q Consensus 218 i~~~~~---~~n~DGi~~~~s~nV~I~n~~i~~-gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~ 293 (456)
+..... ....+||.+..|++++|++|+++. .|+||.++. +++++|+||+++.. ..||.+.
T Consensus 95 i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~------------s~~~~v~nN~~~~n-~~GI~i~--- 158 (314)
T TIGR03805 95 VEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ------------SQNIVVRNNVAEEN-VAGIEIE--- 158 (314)
T ss_pred EEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECC------------CCCeEEECCEEccC-cceEEEE---
Confidence 874321 124678999889999999999987 455787765 78999999999876 6787775
Q ss_pred cCcEEeEEEEeEEEECCcceEEEEecCCCC-ceEEeEEEEceEecCc
Q 012788 294 SGGISNVQVEKIHLYDSLNGIEFRTTKGRG-GYIRQIVISDAELYNI 339 (456)
Q Consensus 294 ~~~v~nI~v~n~~~~~~~~gi~iks~~g~~-g~v~nI~~~ni~~~~~ 339 (456)
...++.|+|+++.+...|+.+-..++.. ..-+++++++.++.+.
T Consensus 159 --~S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 159 --NSQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred --ecCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECC
Confidence 2457788888888877888886554321 1235677776666543
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.44 E-value=2e-12 Score=133.74 Aligned_cols=213 Identities=17% Similarity=0.246 Sum_probs=156.2
Q ss_pred ceeeEEEeeeeeEEEeccCceeeCCCc--cccccccc---------CCCCCCCCeeEEEEeeccEEEEeEEEEeCCcceE
Q 012788 135 YKSLINGYMLRDVVVTGDNGTIDGQGS--VWWDWFSS---------QSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNI 203 (456)
Q Consensus 135 ~~~~i~~~~~~ni~I~G~~GtidG~g~--~ww~~~~~---------~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i 203 (456)
+.+.++.....+..+.+. |.+|+.+. .||..... ....+.|+.. .+.... .....+.-+-.+..++
T Consensus 165 ~~~~~~a~~~~~~~~~~~-g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~-~~~~~g-~~~~~i~~~~~rp~~~ 241 (542)
T COG5434 165 SGPYVYATDSDNAMISGE-GLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDK-WFSGLG-AVETRIGGKGVRPRTV 241 (542)
T ss_pred cCcceeeecccCceeeee-cccccCcccceeccCCceEEEeccceecCccccchhh-hhhccc-chhhcccccCcCCceE
Confidence 456778888888889986 88876433 34432110 0011112210 000000 0011111111244578
Q ss_pred EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCC----ceEecCCCCCccccccCCCcccEEEEEEEE
Q 012788 204 HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGH----DAISLKSGWDEYGIAYGRPTTDVHIRRVLL 279 (456)
Q Consensus 204 ~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gD----D~iai~sg~~~~g~~~~~~s~ni~I~n~~~ 279 (456)
.+..|+||.+++++|.+++ -.++|+..|+|++++|.+|.+.+ |++.+.+ |+|++|++|+|
T Consensus 242 ~l~~c~NV~~~g~~i~ns~----~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s------------c~NvlI~~~~f 305 (542)
T COG5434 242 VLKGCRNVLLEGLNIKNSP----LWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS------------CSNVLIEGCRF 305 (542)
T ss_pred EEeccceEEEeeeEecCCC----cEEEeeecccCceecceEEECCCCCCCCcccccc------------ceeEEEeccEE
Confidence 9999999999999999976 36899999999999999999844 4777776 99999999999
Q ss_pred ecCCCCeeEeccccc-------CcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcceeEEEeccCCCC
Q 012788 280 QSSSGSSVAFGSEMS-------GGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFGACGNCGSH 352 (456)
Q Consensus 280 ~~~~~~gi~igs~~~-------~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~ 352 (456)
... +++|++++... +.-++|+|+||.|.....++-+.++. +|.|+||++||+.|.+...+++|+....
T Consensus 306 dtg-DD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~--~ggv~ni~ved~~~~~~d~GLRikt~~~-- 380 (542)
T COG5434 306 DTG-DDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEM--GGGVQNITVEDCVMDNTDRGLRIKTNDG-- 380 (542)
T ss_pred ecC-CceEEeecccCCcccccccccccEEEecceecccccceEeeeec--CCceeEEEEEeeeeccCcceeeeeeecc--
Confidence 986 99999998742 23689999999999888888888885 7899999999999999999999987643
Q ss_pred CCCCCCCCCCCeEEEEEEEEEEeeccc
Q 012788 353 PDDDFDPDALPAIDQITFKDIIGTNIT 379 (456)
Q Consensus 353 ~~~~~~~~~~~~i~nIt~~nI~~~~~~ 379 (456)
+.+.++||+|+++.+....
T Consensus 381 --------~gG~v~nI~~~~~~~~nv~ 399 (542)
T COG5434 381 --------RGGGVRNIVFEDNKMRNVK 399 (542)
T ss_pred --------cceeEEEEEEecccccCcc
Confidence 2368999999999998874
No 21
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.85 E-value=5e-08 Score=85.92 Aligned_cols=142 Identities=19% Similarity=0.231 Sum_probs=103.4
Q ss_pred eEEEEeeccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCC
Q 012788 179 LVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGW 258 (456)
Q Consensus 179 ~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~ 258 (456)
.|.+....+++|++++|.+....++.+..+..++|++++|.. ...|+.+....++.+++|.+.....++.+..
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~~-- 74 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVSG-- 74 (158)
T ss_dssp CEEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECCS--
T ss_pred EEEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEEe--
Confidence 367777889999999999999999999999999999999998 3678999988999999999998776676664
Q ss_pred CccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCc-ceEEEEecCCCCceEEeEEEEceEec
Q 012788 259 DEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSL-NGIEFRTTKGRGGYIRQIVISDAELY 337 (456)
Q Consensus 259 ~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~-~gi~iks~~g~~g~v~nI~~~ni~~~ 337 (456)
+.+++|++|.+......||.+.. ...+++|++|+|.+.. .|+.+.... -.++++++.++.
T Consensus 75 ----------~~~~~i~~~~i~~~~~~gi~~~~----~~~~~~i~~n~~~~~~~~gi~~~~~~-----~~~~~i~~n~i~ 135 (158)
T PF13229_consen 75 ----------SSNITIENNRIENNGDYGIYISN----SSSNVTIENNTIHNNGGSGIYLEGGS-----SPNVTIENNTIS 135 (158)
T ss_dssp -----------CS-EEES-EEECSSS-SCE-TC----EECS-EEES-EEECCTTSSCEEEECC-------S-EEECEEEE
T ss_pred ----------cCCceecCcEEEcCCCccEEEec----cCCCEEEEeEEEEeCcceeEEEECCC-----CCeEEEEEEEEE
Confidence 79999999999987455888863 3567999999999876 788887642 246788888887
Q ss_pred Ccc-eeEEEe
Q 012788 338 NIN-VAFGAC 346 (456)
Q Consensus 338 ~~~-~~i~i~ 346 (456)
+.. .+|.+.
T Consensus 136 ~~~~~gi~~~ 145 (158)
T PF13229_consen 136 NNGGNGIYLI 145 (158)
T ss_dssp CESSEEEE-T
T ss_pred eCcceeEEEE
Confidence 754 676653
No 22
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.83 E-value=1.1e-07 Score=95.96 Aligned_cols=143 Identities=15% Similarity=0.125 Sum_probs=111.1
Q ss_pred eEEEEeeccEEEEeEEEEeCC------cceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEec-CCce
Q 012788 179 LVEFISSENVVVSNLTFLNAP------AYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAM-GHDA 251 (456)
Q Consensus 179 ~i~~~~~~nv~I~~v~i~ns~------~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gDD~ 251 (456)
++.-...+||+|+|++|.++. ...|++..|++++|++++|.++. .-||.+..|+ ..|.++.|.. .+..
T Consensus 108 lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg----~FGI~L~~~~-~~I~~N~I~g~~~~~ 182 (455)
T TIGR03808 108 LLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSG----GNGIWLETVS-GDISGNTITQIAVTA 182 (455)
T ss_pred EEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCC----cceEEEEcCc-ceEecceEeccccce
Confidence 455667899999999999976 34788899999999999999842 3689999998 7788888776 6666
Q ss_pred EecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEeccc-------------------------ccC------cEEeE
Q 012788 252 ISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSE-------------------------MSG------GISNV 300 (456)
Q Consensus 252 iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~-------------------------~~~------~v~nI 300 (456)
|.+.. +++..|+++++.+.++.||.|.-. ..+ ...++
T Consensus 183 I~lw~------------S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v 250 (455)
T TIGR03808 183 IVSFD------------ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNV 250 (455)
T ss_pred EEEec------------cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCe
Confidence 65544 899999999999876778876522 011 25679
Q ss_pred EEEeEEEECCc-ceEEEEecCCCCceEEeEEEEceEecCcce-eEEE
Q 012788 301 QVEKIHLYDSL-NGIEFRTTKGRGGYIRQIVISDAELYNINV-AFGA 345 (456)
Q Consensus 301 ~v~n~~~~~~~-~gi~iks~~g~~g~v~nI~~~ni~~~~~~~-~i~i 345 (456)
+|+++++.++. .|+++.+. +|+.|++.+++++++ +++.
T Consensus 251 ~V~gN~I~~~r~dgI~~nss-------s~~~i~~N~~~~~R~~alhy 290 (455)
T TIGR03808 251 IVRGNRIRNCDYSAVRGNSA-------SNIQITGNSVSDVREVALYS 290 (455)
T ss_pred EEECCEEeccccceEEEEcc-------cCcEEECcEeeeeeeeEEEE
Confidence 99999999998 89999875 567777777777776 6553
No 23
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.82 E-value=3.7e-07 Score=90.43 Aligned_cols=152 Identities=18% Similarity=0.235 Sum_probs=116.8
Q ss_pred eEEEEeeccEEEEeEEEEe-------CCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCce
Q 012788 179 LVEFISSENVVVSNLTFLN-------APAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDA 251 (456)
Q Consensus 179 ~i~~~~~~nv~I~~v~i~n-------s~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~ 251 (456)
.|.+..+++++|+++++.. ...+++.+..|++++|+++++.... .+||.+..|++++|+|++++....|
T Consensus 79 GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~----d~GIyv~~s~~~~v~nN~~~~n~~G 154 (314)
T TIGR03805 79 GVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGAS----DAGIYVGQSQNIVVRNNVAEENVAG 154 (314)
T ss_pred eEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCC----cccEEECCCCCeEEECCEEccCcce
Confidence 5788899999999999972 3468999999999999999998742 3599999999999999999998888
Q ss_pred EecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEeccccc---CcEEeEEEEeEEEECCcc------eEEEEecCCC
Q 012788 252 ISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMS---GGISNVQVEKIHLYDSLN------GIEFRTTKGR 322 (456)
Q Consensus 252 iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~---~~v~nI~v~n~~~~~~~~------gi~iks~~g~ 322 (456)
|.+.. +.++.|+++++... ..|+.+-+... ...++++|+++.+.+... |-.+...+..
T Consensus 155 I~i~~------------S~~~~v~~N~~~~N-~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g 221 (314)
T TIGR03805 155 IEIEN------------SQNADVYNNIATNN-TGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAG 221 (314)
T ss_pred EEEEe------------cCCcEEECCEEecc-ceeEEEeecCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCC
Confidence 88765 78999999999987 67998844321 245789999999986531 1112112222
Q ss_pred CceE----EeEEEEceEecCcce-eEEEec
Q 012788 323 GGYI----RQIVISDAELYNINV-AFGACG 347 (456)
Q Consensus 323 ~g~v----~nI~~~ni~~~~~~~-~i~i~~ 347 (456)
.|.+ ++++|+|.++.+... ++.+..
T Consensus 222 ~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~~ 251 (314)
T TIGR03805 222 TGVVVMANRDVEIFGNVISNNDTANVLISS 251 (314)
T ss_pred cEEEEEcccceEEECCEEeCCcceeEEEEe
Confidence 3443 899999999988764 566643
No 24
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.78 E-value=4.5e-08 Score=91.23 Aligned_cols=127 Identities=13% Similarity=0.208 Sum_probs=91.9
Q ss_pred EEEeeccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCC-----Cceee------ecCccCEEEEecEEecCC
Q 012788 181 EFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPY-----TVGIV------PDSSDNVCIEDCIIAMGH 249 (456)
Q Consensus 181 ~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n-----~DGi~------~~~s~nV~I~n~~i~~gD 249 (456)
.|+.|+++++++++|-|++.. +..|++++++|+.+.+.....+ -||+. +++++||.|+|+.+.+.|
T Consensus 93 ~fR~~~~i~L~nv~~~~A~Et---~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKD 169 (277)
T PF12541_consen 93 MFRECSNITLENVDIPDADET---LWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKD 169 (277)
T ss_pred HhhcccCcEEEeeEeCCCccc---CEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEeccc
Confidence 355788999999999887643 3457777888877754322222 23333 456999999999999877
Q ss_pred ceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeE
Q 012788 250 DAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQI 329 (456)
Q Consensus 250 D~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI 329 (456)
|+.. ++||+|+|+++.+. .+| -..+|+++.||++.+.+ .--|++|+
T Consensus 170 ---AFWn------------~eNVtVyDS~i~GE-----YLg----W~SkNltliNC~I~g~Q----------pLCY~~~L 215 (277)
T PF12541_consen 170 ---AFWN------------CENVTVYDSVINGE-----YLG----WNSKNLTLINCTIEGTQ----------PLCYCDNL 215 (277)
T ss_pred ---cccc------------CCceEEEcceEeee-----EEE----EEcCCeEEEEeEEeccC----------ccEeecce
Confidence 4543 89999999999854 233 24689999999998763 13688999
Q ss_pred EEEceEecCcceeEE
Q 012788 330 VISDAELYNINVAFG 344 (456)
Q Consensus 330 ~~~ni~~~~~~~~i~ 344 (456)
+.+|++|.+...++.
T Consensus 216 ~l~nC~~~~tdlaFE 230 (277)
T PF12541_consen 216 VLENCTMIDTDLAFE 230 (277)
T ss_pred EEeCcEeecceeeee
Confidence 999999998766543
No 25
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.65 E-value=3.2e-07 Score=85.61 Aligned_cols=103 Identities=20% Similarity=0.304 Sum_probs=81.4
Q ss_pred EEEEeeccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCC
Q 012788 180 VEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWD 259 (456)
Q Consensus 180 i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~ 259 (456)
.-+++++|+.|+++.+... -.|+.|+||.|+|.++.+. |. ++.|+||+|.|++|..-
T Consensus 131 Yf~m~s~ni~id~l~~~Gn----Y~Fq~~kNvei~ns~l~sK------DA--FWn~eNVtVyDS~i~GE----------- 187 (277)
T PF12541_consen 131 YFFMNSENIYIDNLVLDGN----YSFQYCKNVEIHNSKLDSK------DA--FWNCENVTVYDSVINGE----------- 187 (277)
T ss_pred EeeeeccceEEeceEEeCC----EEeeceeeEEEEccEEecc------cc--cccCCceEEEcceEeee-----------
Confidence 5667788888888887543 4678999999999999974 33 57899999999999852
Q ss_pred ccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceEEEEe
Q 012788 260 EYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRT 318 (456)
Q Consensus 260 ~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~iks 318 (456)
..+..++|+++.||++.+ ..|+. .+.|++++||+|.+++.++...+
T Consensus 188 ----YLgW~SkNltliNC~I~g--~QpLC-------Y~~~L~l~nC~~~~tdlaFEyS~ 233 (277)
T PF12541_consen 188 ----YLGWNSKNLTLINCTIEG--TQPLC-------YCDNLVLENCTMIDTDLAFEYSN 233 (277)
T ss_pred ----EEEEEcCCeEEEEeEEec--cCccE-------eecceEEeCcEeecceeeeeecc
Confidence 112349999999999997 46665 67999999999999887776633
No 26
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.54 E-value=1.3e-06 Score=76.85 Aligned_cols=122 Identities=25% Similarity=0.320 Sum_probs=86.5
Q ss_pred eeEEEEeeccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEec-CCceEecCC
Q 012788 178 HLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAM-GHDAISLKS 256 (456)
Q Consensus 178 ~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gDD~iai~s 256 (456)
..|.+..+..++|++.+|.+ ...++.+....+++++++.+... ..|+.+..+.+++|++|.|.. ++.||.+..
T Consensus 24 ~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~-----~~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~ 97 (158)
T PF13229_consen 24 DGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDN-----GSGIYVSGSSNITIENNRIENNGDYGIYISN 97 (158)
T ss_dssp ECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES------SEEEECCS-CS-EEES-EEECSSS-SCE-TC
T ss_pred eEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEc-----cceEEEEecCCceecCcEEEcCCCccEEEec
Confidence 45888888889999999999 77789999999999999999974 278999999999999999988 444887764
Q ss_pred CCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCc-ceEEEEec
Q 012788 257 GWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSL-NGIEFRTT 319 (456)
Q Consensus 257 g~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~-~gi~iks~ 319 (456)
+..+++|++|++....+.|+.+.... -.+++|++|++.+.. .|+.+...
T Consensus 98 -----------~~~~~~i~~n~~~~~~~~gi~~~~~~---~~~~~i~~n~i~~~~~~gi~~~~~ 147 (158)
T PF13229_consen 98 -----------SSSNVTIENNTIHNNGGSGIYLEGGS---SPNVTIENNTISNNGGNGIYLISG 147 (158)
T ss_dssp -----------EECS-EEES-EEECCTTSSCEEEECC-----S-EEECEEEECESSEEEE-TT-
T ss_pred -----------cCCCEEEEeEEEEeCcceeEEEECCC---CCeEEEEEEEEEeCcceeEEEECC
Confidence 16889999999998755888876432 347899999999875 67777543
No 27
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.49 E-value=8.7e-06 Score=77.00 Aligned_cols=175 Identities=16% Similarity=0.178 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhhccccCCCcEEEecCCceeee-----eeEeccceEEEeccCcEEEecCCCCCCCcCCCCCCCCcccccC
Q 012788 57 TLAFQNAIFYLKSFADKGGAQLYVPSGKWLTG-----SFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELP 131 (456)
Q Consensus 57 T~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g-----~l~L~s~~tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~ 131 (456)
-+-|++|++.| ..|.+|+|-+|+|... ||.|+++++|..+.... |.
T Consensus 15 ~~Ti~~A~~~a-----~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~k---------------------G~--- 65 (246)
T PF07602_consen 15 FKTITKALQAA-----QPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNK---------------------GQ--- 65 (246)
T ss_pred HHHHHHHHHhC-----CCCCEEEECCceeccccCCcccEEecCCeEEeecccCC---------------------Cc---
Confidence 35799999976 6788999999999642 57788877776531110 00
Q ss_pred CCcceeeEEEeeeeeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEeCCcceEEeecccce
Q 012788 132 GRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNV 211 (456)
Q Consensus 132 ~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv 211 (456)
-..++.. +...+.|.| .+... ....+.+....+.+|++++|.|+..
T Consensus 66 ---~~il~~g-~~~~~~I~g-------~~~~~------------~~qn~tI~~~~~~~i~GvtItN~n~----------- 111 (246)
T PF07602_consen 66 ---IDILITG-GGTGPTISG-------GGPDL------------SGQNVTIILANNATISGVTITNPNI----------- 111 (246)
T ss_pred ---ceEEecC-CceEEeEec-------cCccc------------cceeEEEEecCCCEEEEEEEEcCCC-----------
Confidence 0001111 111123333 22100 0233555566777777877777610
Q ss_pred EEEEEEEECCCCCCCCceeeecCccCEEEEecEEec-CCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEec
Q 012788 212 HIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAM-GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFG 290 (456)
Q Consensus 212 ~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~ig 290 (456)
...-|+.+.++ +.+|+||+|.. ..++|.+... .......++.|+++.+... ..||++.
T Consensus 112 -------------~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~------~~~~~i~~~vI~GN~~~~~-~~Gi~i~ 170 (246)
T PF07602_consen 112 -------------ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGT------SANPGINGNVISGNSIYFN-KTGISIS 170 (246)
T ss_pred -------------CcceEEEEecC-CcEEEeeEEECCccccEEEEee------ecCCcccceEeecceEEec-CcCeEEE
Confidence 01224444333 55555555554 3444443221 0112367788888888876 7788886
Q ss_pred ccccCcEEeEEEEeEEEECCcceEEEE
Q 012788 291 SEMSGGISNVQVEKIHLYDSLNGIEFR 317 (456)
Q Consensus 291 s~~~~~v~nI~v~n~~~~~~~~gi~ik 317 (456)
.-..+ +. -.++|+.+++...||.+.
T Consensus 171 ~~~~~-~~-n~I~NN~I~~N~~Gi~~~ 195 (246)
T PF07602_consen 171 DNAAP-VE-NKIENNIIENNNIGIVAI 195 (246)
T ss_pred cccCC-cc-ceeeccEEEeCCcCeEee
Confidence 54333 33 355888888776687765
No 28
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=98.47 E-value=3.4e-05 Score=74.51 Aligned_cols=159 Identities=20% Similarity=0.264 Sum_probs=109.2
Q ss_pred CCCcEEEecCCceeeeeeEeccceEEEeccCcEEEecCCCCCCCcCCCCCCCCcccccCCCcceeeEEEeeeeeEEEecc
Q 012788 73 KGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGD 152 (456)
Q Consensus 73 ~gg~~v~iP~G~Yl~g~l~L~s~~tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~ 152 (456)
.+|..+-+. |+| .|.+.+....+|+.++++++....... .+. -...++.++|
T Consensus 32 ~pgd~~~i~-g~~-~g~~vInr~l~l~ge~ga~l~g~g~G~------------------------~vt-v~aP~~~v~G- 83 (408)
T COG3420 32 KPGDYYGIS-GRY-AGNFVINRALTLRGENGAVLDGGGKGS------------------------YVT-VAAPDVIVEG- 83 (408)
T ss_pred CCCcEEEEe-eee-cccEEEccceeeccccccEEecCCccc------------------------EEE-EeCCCceeee-
Confidence 577888787 887 467778778888889999986543321 222 1345566666
Q ss_pred CceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCC---CCCCce
Q 012788 153 NGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPE---SPYTVG 229 (456)
Q Consensus 153 ~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~---~~n~DG 229 (456)
-++.+.|..- +......+.-...+.-.|+...++.. .+++.+..+.++.+++.+|....+ ....+|
T Consensus 84 -l~vr~sg~~l---------p~m~agI~v~~~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnG 152 (408)
T COG3420 84 -LTVRGSGRSL---------PAMDAGIFVGRTATGAVVRHNDLIGN-SFGIYLHGSADVRIEGNTIQGLADLRVAERGNG 152 (408)
T ss_pred -EEEecCCCCc---------ccccceEEeccCcccceEEccccccc-ceEEEEeccCceEEEeeEEeeccccchhhccCc
Confidence 3554444321 11112233334455566666666654 468999999999999999987544 345789
Q ss_pred eeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecC
Q 012788 230 IVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSS 282 (456)
Q Consensus 230 i~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~ 282 (456)
|+++++++++|....|+.+.|||..+. +++-.|+++.++..
T Consensus 153 I~vyNa~~a~V~~ndisy~rDgIy~~~------------S~~~~~~gnr~~~~ 193 (408)
T COG3420 153 IYVYNAPGALVVGNDISYGRDGIYSDT------------SQHNVFKGNRFRDL 193 (408)
T ss_pred eEEEcCCCcEEEcCccccccceEEEcc------------cccceecccchhhe
Confidence 999999999999999999999998887 66666777766643
No 29
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.44 E-value=4.9e-06 Score=79.19 Aligned_cols=134 Identities=20% Similarity=0.183 Sum_probs=69.4
Q ss_pred EEEEeeccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCC
Q 012788 180 VEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWD 259 (456)
Q Consensus 180 i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~ 259 (456)
+.+..+++..|++.++.+.. .++.+..+++++|+++++... ..||++..+++++|+++.+.....||.+..
T Consensus 16 i~l~~~~~~~i~~n~i~~~~-~gi~~~~s~~~~I~~n~i~~~-----~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~--- 86 (236)
T PF05048_consen 16 IYLWNSSNNSIENNTISNSR-DGIYVENSDNNTISNNTISNN-----RYGIHLMGSSNNTIENNTISNNGYGIYLMG--- 86 (236)
T ss_pred EEEEeCCCCEEEcCEEEeCC-CEEEEEEcCCeEEEeeEEECC-----CeEEEEEccCCCEEEeEEEEccCCCEEEEc---
Confidence 45555555555555555443 344555556666666655542 455666555556666666655445555554
Q ss_pred ccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCc
Q 012788 260 EYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNI 339 (456)
Q Consensus 260 ~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~ 339 (456)
+.+.+|+++++... ..||.+. ...+.+|+++++.+...||.+... .+.++++.++.+.
T Consensus 87 ---------s~~~~I~~N~i~~n-~~GI~l~-----~s~~~~I~~N~i~~~~~GI~l~~s-------~~n~I~~N~i~~n 144 (236)
T PF05048_consen 87 ---------SSNNTISNNTISNN-GYGIYLY-----GSSNNTISNNTISNNGYGIYLSSS-------SNNTITGNTISNN 144 (236)
T ss_pred ---------CCCcEEECCEecCC-CceEEEe-----eCCceEEECcEEeCCCEEEEEEeC-------CCCEEECeEEeCC
Confidence 33335666666554 3355443 223355555555555555555432 3344444444443
Q ss_pred -ceeEE
Q 012788 340 -NVAFG 344 (456)
Q Consensus 340 -~~~i~ 344 (456)
..+|.
T Consensus 145 ~~~Gi~ 150 (236)
T PF05048_consen 145 TDYGIY 150 (236)
T ss_pred CccceE
Confidence 44544
No 30
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=98.42 E-value=4.3e-05 Score=72.16 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=38.7
Q ss_pred CCCceEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCCce--eee-eeEeccceEEEec
Q 012788 36 PRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKW--LTG-SFNLTSHLTLFLE 101 (456)
Q Consensus 36 ~~~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Y--l~g-~l~L~s~~tL~l~ 101 (456)
+....+|+.||- ..|=-++|.+|+. .+.||++|+|-- .+. ++.++.+-||+++
T Consensus 30 ~~~~~vni~dy~-----~~dwiasfkqaf~--------e~qtvvvpagl~cenint~ifip~gktl~v~ 85 (464)
T PRK10123 30 PARQSVNINDYN-----PHDWIASFKQAFS--------EGQTVVVPAGLVCDNINTGIFIPPGKTLHIL 85 (464)
T ss_pred CCCceeehhhcC-----cccHHHHHHHHhc--------cCcEEEecCccEecccccceEeCCCCeEEEE
Confidence 467889999995 3456688998875 357999999953 222 5777777777765
No 31
>PLN02480 Probable pectinesterase
Probab=98.41 E-value=7.3e-05 Score=74.34 Aligned_cols=131 Identities=12% Similarity=0.112 Sum_probs=72.4
Q ss_pred EeeccEEEEeEEEEeCCc---------ceEEe-ecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceE
Q 012788 183 ISSENVVVSNLTFLNAPA---------YNIHP-VYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAI 252 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~---------~~i~~-~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~i 252 (456)
...++++++||+|+|+.. -.+-+ ...+.+.|.||++... -|-+... ...-.++||+|+..=|-|
T Consensus 129 V~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~-----QDTLy~~-~gR~yf~~C~IeG~VDFI 202 (343)
T PLN02480 129 VEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYST-----HNTLFDY-KGRHYYHSCYIQGSIDFI 202 (343)
T ss_pred EECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecc-----cceeEeC-CCCEEEEeCEEEeeeeEE
Confidence 346789999999999831 12222 4577788888888763 2333322 345667888887643332
Q ss_pred ecCCCCCccccccCCCcccEEEEEEEEecCCC------CeeEecccccCcEEeEEEEeEEEECCcceEEEE-ecCCCCce
Q 012788 253 SLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSG------SSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFR-TTKGRGGY 325 (456)
Q Consensus 253 ai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~------~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~ik-s~~g~~g~ 325 (456)
-| .-...++||++..... ..|.-.+.....-....|.||++.+.. .+.+. .| +.
T Consensus 203 ---FG-----------~g~a~fe~C~i~s~~~~~~~~~G~ITA~~r~~~~~~GfvF~~C~i~g~g-~~yLGRPW----~~ 263 (343)
T PLN02480 203 ---FG-----------RGRSIFHNCEIFVIADRRVKIYGSITAHNRESEDNSGFVFIKGKVYGIG-EVYLGRAK----GA 263 (343)
T ss_pred ---cc-----------ceeEEEEccEEEEecCCCCCCceEEEcCCCCCCCCCEEEEECCEEcccC-ceeeecCC----CC
Confidence 12 3566777887764211 112222222223345777788776632 22222 22 23
Q ss_pred EEeEEEEceEecC
Q 012788 326 IRQIVISDAELYN 338 (456)
Q Consensus 326 v~nI~~~ni~~~~ 338 (456)
...+.|.|..|.+
T Consensus 264 ya~vVf~~t~l~~ 276 (343)
T PLN02480 264 YSRVIFAKTYLSK 276 (343)
T ss_pred cceEEEEecccCC
Confidence 4566666666654
No 32
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.40 E-value=1.1e-05 Score=76.67 Aligned_cols=115 Identities=25% Similarity=0.249 Sum_probs=99.9
Q ss_pred eEEEEeeccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCC
Q 012788 179 LVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGW 258 (456)
Q Consensus 179 ~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~ 258 (456)
.+.+..+.+++|++.++.+. ..++++..+++++|++..+... ..||.+..+.+.+|+++.|.....||.+..
T Consensus 37 gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~n-----~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-- 108 (236)
T PF05048_consen 37 GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISNN-----GYGIYLMGSSNNTISNNTISNNGYGIYLYG-- 108 (236)
T ss_pred EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEcc-----CCCEEEEcCCCcEEECCEecCCCceEEEee--
Confidence 46888999999999999998 7899999999999999999973 489999998888999999999777998876
Q ss_pred CccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECC-cceEEEE
Q 012788 259 DEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDS-LNGIEFR 317 (456)
Q Consensus 259 ~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~-~~gi~ik 317 (456)
+.+.+|+++++... ..||.+... .+.+|++++|.+. ..|+.+.
T Consensus 109 ----------s~~~~I~~N~i~~~-~~GI~l~~s-----~~n~I~~N~i~~n~~~Gi~~~ 152 (236)
T PF05048_consen 109 ----------SSNNTISNNTISNN-GYGIYLSSS-----SNNTITGNTISNNTDYGIYFL 152 (236)
T ss_pred ----------CCceEEECcEEeCC-CEEEEEEeC-----CCCEEECeEEeCCCccceEEe
Confidence 67889999999855 889998632 6889999999988 7898843
No 33
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.39 E-value=7.2e-06 Score=83.84 Aligned_cols=171 Identities=15% Similarity=0.225 Sum_probs=99.8
Q ss_pred EEeecccceEEEEEEEECCCCCCCCceeeecCcc----CEEEEecEEec----CCceEecCCCCCccccccCCCcccEEE
Q 012788 203 IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSD----NVCIEDCIIAM----GHDAISLKSGWDEYGIAYGRPTTDVHI 274 (456)
Q Consensus 203 i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~----nV~I~n~~i~~----gDD~iai~sg~~~~g~~~~~~s~ni~I 274 (456)
+....+++..+++++|.+++. -.+++.... +..|+|..+-. .-||+.+ .+|-+|
T Consensus 323 ~~~~g~q~~~~~GiTI~~pP~----~Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~l--------------y~nS~i 384 (582)
T PF03718_consen 323 ISANGGQTLTCEGITINDPPF----HSMDLYGNENDKFSMNISNYKQVGAWYFQTDGIEL--------------YPNSTI 384 (582)
T ss_dssp CS-SSSEEEEEES-EEE--SS-----SEEEESSSGGGEEEEEEEEEEE---CTT----B----------------TT-EE
T ss_pred hccCCcceEEEEeeEecCCCc----ceEEecCCccccccceeeceeeeeeEEeccCCccc--------------cCCCee
Confidence 345677899999999999863 336665433 47888887664 4566665 567788
Q ss_pred EEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceEEEE-ecCCCCceEEeEEEEceEecCcc---------eeEE
Q 012788 275 RRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFR-TTKGRGGYIRQIVISDAELYNIN---------VAFG 344 (456)
Q Consensus 275 ~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~ik-s~~g~~g~v~nI~~~ni~~~~~~---------~~i~ 344 (456)
+||+++.. +++|.+- ..++.++||+++...+|--|. .|. ...++||+|+|+.+-..+ .+|.
T Consensus 385 ~dcF~h~n-DD~iKlY------hS~v~v~~~ViWk~~Ngpiiq~GW~--pr~isnv~veni~IIh~r~~~~~~~~n~~I~ 455 (582)
T PF03718_consen 385 RDCFIHVN-DDAIKLY------HSNVSVSNTVIWKNENGPIIQWGWT--PRNISNVSVENIDIIHNRWIWHNNYVNTAIL 455 (582)
T ss_dssp EEEEEEES-S-SEE--------STTEEEEEEEEEE-SSS-SEE--CS-----EEEEEEEEEEEEE---SSGGCTTT-ECE
T ss_pred eeeEEEec-Cchhhee------ecCcceeeeEEEecCCCCeEEeecc--ccccCceEEeeeEEEeeeeecccCCCCceeE
Confidence 99999987 9999764 368999999999887765454 243 567999999999986542 2344
Q ss_pred Ee-ccCCCCCCC-CCCCCCCCeEEEEEEEEEEeeccceeEEEEeeCCCCeeeEEEEeEEEE
Q 012788 345 AC-GNCGSHPDD-DFDPDALPAIDQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLS 403 (456)
Q Consensus 345 i~-~~y~~~~~~-~~~~~~~~~i~nIt~~nI~~~~~~~~~~~~g~~~~~~~~I~~~nv~i~ 403 (456)
-. .+|.+-+.. ..+|+. +|++++|+||+.++.- +..+.=.+-...+|+.++|+.+.
T Consensus 456 ~ss~~y~~~~s~~~adp~~--ti~~~~~~nv~~EG~~-~~l~ri~plqn~~nl~ikN~~~~ 513 (582)
T PF03718_consen 456 GSSPFYDDMASTKTADPST--TIRNMTFSNVRCEGMC-PCLFRIYPLQNYDNLVIKNVHFE 513 (582)
T ss_dssp EE--BTTS-SSS--BEEEE--EEEEEEEEEEEEECCE--ECEEE--SEEEEEEEEEEEEEC
T ss_pred ecccccccccCCCCCCccc--ceeeEEEEeEEEeccc-ceeEEEeecCCCcceEEEEeecc
Confidence 33 345221111 112222 7999999999999753 22232234456778888998887
No 34
>smart00656 Amb_all Amb_all domain.
Probab=98.26 E-value=4.4e-05 Score=70.15 Aligned_cols=97 Identities=24% Similarity=0.276 Sum_probs=72.4
Q ss_pred eEEeecccceEEEEEEEECCCC--CCCCceeeecCccCEEEEecEEecC----------CceEecCCCCCccccccCCCc
Q 012788 202 NIHPVYCSNVHIQNISVHAPPE--SPYTVGIVPDSSDNVCIEDCIIAMG----------HDAISLKSGWDEYGIAYGRPT 269 (456)
Q Consensus 202 ~i~~~~~~nv~i~n~~i~~~~~--~~n~DGi~~~~s~nV~I~n~~i~~g----------DD~iai~sg~~~~g~~~~~~s 269 (456)
++.+..++||.|+|++|..... ..+.|+|.+..+++|.|++|.+..+ |..+.++.+ +
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~-----------s 101 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNG-----------S 101 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcc-----------c
Confidence 4555556788888888887533 2367999999999999999999986 333455554 8
Q ss_pred ccEEEEEEEEecCCCCeeEeccccc---CcEEeEEEEeEEEECC
Q 012788 270 TDVHIRRVLLQSSSGSSVAFGSEMS---GGISNVQVEKIHLYDS 310 (456)
Q Consensus 270 ~ni~I~n~~~~~~~~~gi~igs~~~---~~v~nI~v~n~~~~~~ 310 (456)
.+++|++|.|..- ..+.-+|+... ....+|++.++.+.++
T Consensus 102 ~~vTvs~~~f~~h-~~~~liG~~d~~~~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 102 TYVTISNNYFHNH-WKVMLLGHSDSDTDDGKMRVTIAHNYFGNL 144 (190)
T ss_pred ccEEEECceEecC-CEEEEEccCCCccccccceEEEECcEEcCc
Confidence 9999999999865 66778886432 2245799999999765
No 35
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.24 E-value=8.5e-05 Score=70.84 Aligned_cols=63 Identities=21% Similarity=0.199 Sum_probs=36.3
Q ss_pred EEEeeeeeEEEecc--CceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEeCC-----cceEEe-ecccc
Q 012788 139 INGYMLRDVVVTGD--NGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAP-----AYNIHP-VYCSN 210 (456)
Q Consensus 139 i~~~~~~ni~I~G~--~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~-----~~~i~~-~~~~n 210 (456)
+....+.|.+|.|. ++++.|- .+.+.+..||.|+|++|+..+ +..|.+ ....+
T Consensus 95 ~~iki~sNkTivG~g~~a~~~g~-------------------gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~n 155 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLVGG-------------------GLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHN 155 (345)
T ss_pred EEEeeccccEEEeeccccEEEec-------------------eEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeE
Confidence 34466788888886 1233322 366666777888888777665 233444 44445
Q ss_pred eEEEEEEEEC
Q 012788 211 VHIQNISVHA 220 (456)
Q Consensus 211 v~i~n~~i~~ 220 (456)
+.|+++++..
T Consensus 156 IWIDH~tf~~ 165 (345)
T COG3866 156 IWIDHNTFSG 165 (345)
T ss_pred EEEEeeEecc
Confidence 5555555544
No 36
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.19 E-value=6.5e-05 Score=71.62 Aligned_cols=138 Identities=15% Similarity=0.122 Sum_probs=99.0
Q ss_pred EEEEeeccEEEEeEEEE-eCCcceEEeecccceEEEEEEEECCCC-CCCCceeee-cCccCEEEEecEEec---------
Q 012788 180 VEFISSENVVVSNLTFL-NAPAYNIHPVYCSNVHIQNISVHAPPE-SPYTVGIVP-DSSDNVCIEDCIIAM--------- 247 (456)
Q Consensus 180 i~~~~~~nv~I~~v~i~-ns~~~~i~~~~~~nv~i~n~~i~~~~~-~~n~DGi~~-~~s~nV~I~n~~i~~--------- 247 (456)
+.+..+.|.+|.|+--. ---.|++.+.+..||.|+|++|..... -++-|+|.+ ..++|++|++|++..
T Consensus 95 ~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h 174 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSH 174 (345)
T ss_pred EEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccC
Confidence 77777888888887521 112578888889999999999987542 234599999 789999999999986
Q ss_pred CCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEeccccc----CcEEeEEEEeEEEECCc-ceEEEEecCCC
Q 012788 248 GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMS----GGISNVQVEKIHLYDSL-NGIEFRTTKGR 322 (456)
Q Consensus 248 gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~----~~v~nI~v~n~~~~~~~-~gi~iks~~g~ 322 (456)
+|..+.++-+ +..|+|++|+|... +-++-+|+-.. ++-.+|++.+|.|.+.. ++-||.--
T Consensus 175 ~DGl~Dik~~-----------AnyITiS~n~fhdh-~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG--- 239 (345)
T COG3866 175 GDGLVDIKKD-----------ANYITISYNKFHDH-DKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFG--- 239 (345)
T ss_pred CCccEEeccC-----------CcEEEEEeeeeecC-CeeeeeccCCcccccCCceeEEEeccccccccccCCceEee---
Confidence 2444556554 89999999999976 67777777542 45678999999998863 33343210
Q ss_pred CceEEeEEEE
Q 012788 323 GGYIRQIVIS 332 (456)
Q Consensus 323 ~g~v~nI~~~ 332 (456)
.-+|.|-.|+
T Consensus 240 ~vHvyNNYy~ 249 (345)
T COG3866 240 MVHVYNNYYE 249 (345)
T ss_pred EEEEeccccc
Confidence 1244555555
No 37
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.15 E-value=7.1e-05 Score=75.72 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHhhccccCCCcEEEecCCcee
Q 012788 56 NTLAFQNAIFYLKSFADKGGAQLYVPSGKWL 86 (456)
Q Consensus 56 dT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl 86 (456)
+.++||+||+.| .+|.+|+++.|+|.
T Consensus 3 s~~~lq~Ai~~a-----~pGD~I~L~~Gty~ 28 (425)
T PF14592_consen 3 SVAELQSAIDNA-----KPGDTIVLADGTYK 28 (425)
T ss_dssp SHHHHHHHHHH-------TT-EEEE-SEEEE
T ss_pred CHHHHHHHHHhC-----CCCCEEEECCceee
Confidence 578999999987 68999999999996
No 38
>smart00656 Amb_all Amb_all domain.
Probab=97.96 E-value=0.0005 Score=63.14 Aligned_cols=128 Identities=18% Similarity=0.068 Sum_probs=87.8
Q ss_pred eEEEEeeccEEEEeEEEEeCCc------ceEEeecccceEEEEEEEECCCC----CCCCcee-eec-CccCEEEEecEEe
Q 012788 179 LVEFISSENVVVSNLTFLNAPA------YNIHPVYCSNVHIQNISVHAPPE----SPYTVGI-VPD-SSDNVCIEDCIIA 246 (456)
Q Consensus 179 ~i~~~~~~nv~I~~v~i~ns~~------~~i~~~~~~nv~i~n~~i~~~~~----~~n~DGi-~~~-~s~nV~I~n~~i~ 246 (456)
.|.+..++||.|++++|++... .++.+..+++|.|+.|++..... ....||. ++. .+.+|+|.+|.|.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 4777779999999999998643 58999999999999999998510 1114554 443 4789999999998
Q ss_pred cCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCc-ceEEE
Q 012788 247 MGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSL-NGIEF 316 (456)
Q Consensus 247 ~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~-~gi~i 316 (456)
..+-+.-+.++..... ....+|++.+|.+.....+.-.+.. + .+.+.|+.+.+.. .++.+
T Consensus 113 ~h~~~~liG~~d~~~~----~~~~~vT~h~N~~~~~~~R~P~~r~----g--~~hv~NN~~~n~~~~~~~~ 173 (190)
T smart00656 113 NHWKVMLLGHSDSDTD----DGKMRVTIAHNYFGNLRQRAPRVRF----G--YVHVYNNYYTGWTSYAIGG 173 (190)
T ss_pred cCCEEEEEccCCCccc----cccceEEEECcEEcCcccCCCcccC----C--EEEEEeeEEeCcccEeEec
Confidence 7666666665421100 0134799999999764344444431 2 5888899888764 34333
No 39
>PLN02682 pectinesterase family protein
Probab=97.92 E-value=0.002 Score=64.58 Aligned_cols=134 Identities=13% Similarity=0.098 Sum_probs=74.1
Q ss_pred EEEeeccEEEEeEEEEeCCcc---------eE-EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCc
Q 012788 181 EFISSENVVVSNLTFLNAPAY---------NI-HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHD 250 (456)
Q Consensus 181 ~~~~~~nv~I~~v~i~ns~~~---------~i-~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD 250 (456)
.....+++..+|++|+|+... .+ .....+...+.+|++...- |-+... ...-.++||+|+..=|
T Consensus 158 ~~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~Q-----DTLy~~-~gRqyf~~C~IeG~VD 231 (369)
T PLN02682 158 FAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQ-----DTLYDH-LGRHYFKDCYIEGSVD 231 (369)
T ss_pred EEEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccc-----cceEEC-CCCEEEEeeEEccccc
Confidence 344577899999999997421 11 1235677788888887642 333222 2356778888876544
Q ss_pred eEecCCCCCccccccCCCcccEEEEEEEEecC-CC-CeeEecccc-cCcEEeEEEEeEEEECCcceEEEE-ecCCCCceE
Q 012788 251 AISLKSGWDEYGIAYGRPTTDVHIRRVLLQSS-SG-SSVAFGSEM-SGGISNVQVEKIHLYDSLNGIEFR-TTKGRGGYI 326 (456)
Q Consensus 251 ~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~-~~-~gi~igs~~-~~~v~nI~v~n~~~~~~~~gi~ik-s~~g~~g~v 326 (456)
=|- | .-...+++|++... .. ..|.-.+.. ...-....|.||++.+.. -+.+. .| +..
T Consensus 232 FIF---G-----------~g~a~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~itg~g-~~yLGRpW----~~y 292 (369)
T PLN02682 232 FIF---G-----------NGLSLYEGCHLHAIARNFGALTAQKRQSVLEDTGFSFVNCKVTGSG-ALYLGRAW----GTF 292 (369)
T ss_pred EEe---c-----------CceEEEEccEEEEecCCCeEEecCCCCCCCCCceEEEEeeEecCCC-ceEeecCC----CCc
Confidence 331 1 35667777877642 11 122222211 122346777888887642 22222 22 224
Q ss_pred EeEEEEceEecCc
Q 012788 327 RQIVISDAELYNI 339 (456)
Q Consensus 327 ~nI~~~ni~~~~~ 339 (456)
..+.|.|..|.+.
T Consensus 293 arvVf~~t~m~~~ 305 (369)
T PLN02682 293 SRVVFAYTYMDNI 305 (369)
T ss_pred ceEEEEeccCCCc
Confidence 5677777776653
No 40
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.91 E-value=0.00057 Score=63.87 Aligned_cols=124 Identities=19% Similarity=0.281 Sum_probs=81.0
Q ss_pred EEEEeEEEEeCCc------ceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCcc
Q 012788 188 VVVSNLTFLNAPA------YNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEY 261 (456)
Q Consensus 188 v~I~~v~i~ns~~------~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~ 261 (456)
++|++++|..... .++.+..++++.|+||++.+. +.+|+.+..+....+.+..... ++.+..+
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~----~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~---- 162 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENS----GGDGIYFNTGTDYRIIGSTHVS---GIFIDNG---- 162 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEEE---EEEEESC----
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEcc----CccEEEEEccccCcEeecccce---eeeeccc----
Confidence 4477777765432 357777788888888888764 3567776644444444433221 2222222
Q ss_pred ccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEEC-CcceEEEEecCCCCceEEeEEEEceEecCcc
Q 012788 262 GIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYD-SLNGIEFRTTKGRGGYIRQIVISDAELYNIN 340 (456)
Q Consensus 262 g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~-~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~ 340 (456)
+.++.+.|+.+... ..|+..+. ++++++||++.+ ...|+.+... ++++++|++++++.
T Consensus 163 -------~~~~~~~~~~~~~~-~~g~~~~~------~~~~i~n~~~~~~~~~gi~i~~~-------~~~~i~n~~i~~~~ 221 (225)
T PF12708_consen 163 -------SNNVIVNNCIFNGG-DNGIILGN------NNITISNNTFEGNCGNGINIEGG-------SNIIISNNTIENCD 221 (225)
T ss_dssp -------EEEEEEECEEEESS-SCSEECEE------EEEEEECEEEESSSSESEEEEEC-------SEEEEEEEEEESSS
T ss_pred -------eeEEEECCccccCC-CceeEeec------ceEEEEeEEECCccceeEEEECC-------eEEEEEeEEEECCc
Confidence 46777788888876 66644332 799999999998 6789988765 33888888888887
Q ss_pred eeE
Q 012788 341 VAF 343 (456)
Q Consensus 341 ~~i 343 (456)
.+|
T Consensus 222 ~g~ 224 (225)
T PF12708_consen 222 DGI 224 (225)
T ss_dssp EEE
T ss_pred cCc
Confidence 765
No 41
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.84 E-value=0.00012 Score=67.83 Aligned_cols=96 Identities=25% Similarity=0.383 Sum_probs=63.6
Q ss_pred eEEee-cccceEEEEEEEECC-----------CCCCCCceeeecCccCEEEEecEEecC--------Cc-eEecCCCCCc
Q 012788 202 NIHPV-YCSNVHIQNISVHAP-----------PESPYTVGIVPDSSDNVCIEDCIIAMG--------HD-AISLKSGWDE 260 (456)
Q Consensus 202 ~i~~~-~~~nv~i~n~~i~~~-----------~~~~n~DGi~~~~s~nV~I~n~~i~~g--------DD-~iai~sg~~~ 260 (456)
++.+. .++||.|+|++|... ......|+|.+..+++|.|++|.+..+ .| .+.++.+
T Consensus 38 G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~--- 114 (200)
T PF00544_consen 38 GLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKG--- 114 (200)
T ss_dssp EEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESS---
T ss_pred eEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeC---
Confidence 44444 677777777777761 123457999999999999999999876 33 3566554
Q ss_pred cccccCCCcccEEEEEEEEecCCCCeeEeccc----ccCcEEeEEEEeEEEECC
Q 012788 261 YGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSE----MSGGISNVQVEKIHLYDS 310 (456)
Q Consensus 261 ~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~----~~~~v~nI~v~n~~~~~~ 310 (456)
+.+|+|++|.|... ..+.-+|+. ...+ .+|++.++.+.++
T Consensus 115 --------s~~vTiS~n~f~~~-~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 115 --------SDNVTISNNIFDNH-NKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp --------TEEEEEES-EEEEE-EETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred --------CceEEEEchhcccc-ccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 89999999999864 455556764 2234 8899999988765
No 42
>PLN02773 pectinesterase
Probab=97.83 E-value=0.0052 Score=60.62 Aligned_cols=133 Identities=13% Similarity=0.111 Sum_probs=78.4
Q ss_pred EEEeeccEEEEeEEEEeCCcc----e-EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecC
Q 012788 181 EFISSENVVVSNLTFLNAPAY----N-IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLK 255 (456)
Q Consensus 181 ~~~~~~nv~I~~v~i~ns~~~----~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~ 255 (456)
.+..++++..+||+|+|+..- . -.....+.+.+.+|++... -|-+-.. .....++||+|+..=|=|-
T Consensus 97 v~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~-----QDTL~~~-~gr~yf~~c~IeG~VDFIF-- 168 (317)
T PLN02773 97 VIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGW-----QDTLYLH-YGKQYLRDCYIEGSVDFIF-- 168 (317)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecc-----cceeEeC-CCCEEEEeeEEeecccEEe--
Confidence 444688999999999998421 1 1223567888888888874 3434332 2357788888887544442
Q ss_pred CCCCccccccCCCcccEEEEEEEEecCCCCee-Eecccc-cCcEEeEEEEeEEEECCcc--eEEEE-ecCCCCceEEeEE
Q 012788 256 SGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSV-AFGSEM-SGGISNVQVEKIHLYDSLN--GIEFR-TTKGRGGYIRQIV 330 (456)
Q Consensus 256 sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi-~igs~~-~~~v~nI~v~n~~~~~~~~--gi~ik-s~~g~~g~v~nI~ 330 (456)
| .-...+++|++... ..|. .-.+.. ...-....|.||++.+... -+.+. .| +.-..++
T Consensus 169 -G-----------~g~a~Fe~c~i~s~-~~g~ITA~~r~~~~~~~GfvF~~c~it~~~~~~~~yLGRpW----~~~a~vV 231 (317)
T PLN02773 169 -G-----------NSTALLEHCHIHCK-SAGFITAQSRKSSQESTGYVFLRCVITGNGGSGYMYLGRPW----GPFGRVV 231 (317)
T ss_pred -e-----------ccEEEEEeeEEEEc-cCcEEECCCCCCCCCCceEEEEccEEecCCCCcceeecCCC----CCCceEE
Confidence 2 35578888888753 3333 212111 1123467888888876532 12222 22 2245677
Q ss_pred EEceEecC
Q 012788 331 ISDAELYN 338 (456)
Q Consensus 331 ~~ni~~~~ 338 (456)
|.|..|.+
T Consensus 232 f~~t~l~~ 239 (317)
T PLN02773 232 FAYTYMDA 239 (317)
T ss_pred EEecccCC
Confidence 77777765
No 43
>PLN02176 putative pectinesterase
Probab=97.78 E-value=0.012 Score=58.57 Aligned_cols=130 Identities=11% Similarity=0.125 Sum_probs=69.2
Q ss_pred eeccEEEEeEEEEeCCcc----------e-EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceE
Q 012788 184 SSENVVVSNLTFLNAPAY----------N-IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAI 252 (456)
Q Consensus 184 ~~~nv~I~~v~i~ns~~~----------~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~i 252 (456)
.++++..+|++|+|.... . -.....+...+.+|++... -|-+... ...-.++||+|+..=|=|
T Consensus 120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~-----QDTLy~~-~gRqyf~~CyIeG~VDFI 193 (340)
T PLN02176 120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGF-----QDTLFDG-KGRHYYKRCVISGGIDFI 193 (340)
T ss_pred ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecc-----cceeEeC-CcCEEEEecEEEecccEE
Confidence 467888899999887321 1 1223467777778877763 2333332 345667788887654433
Q ss_pred ecCCCCCccccccCCCcccEEEEEEEEecCC-------C-CeeEecccc-cCcEEeEEEEeEEEECCcceEEEE-ecCCC
Q 012788 253 SLKSGWDEYGIAYGRPTTDVHIRRVLLQSSS-------G-SSVAFGSEM-SGGISNVQVEKIHLYDSLNGIEFR-TTKGR 322 (456)
Q Consensus 253 ai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~-------~-~gi~igs~~-~~~v~nI~v~n~~~~~~~~gi~ik-s~~g~ 322 (456)
- | .-...++||++..-. . .-|.-.+.. ...-....|.||++.+.. -+.+. .|
T Consensus 194 F---G-----------~a~a~Fe~C~I~s~~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~g-~~yLGRPW--- 255 (340)
T PLN02176 194 F---G-----------YAQSIFEGCTLKLTLGIYPPNEPYGTITAQGRPSPSDKGGFVFKDCTVTGVG-KALLGRAW--- 255 (340)
T ss_pred e---c-----------CceEEEeccEEEEecccCCCCCCcEEEEeCCCCCCCCCcEEEEECCEEccCc-ceeeecCC---
Confidence 2 1 345677777776310 0 112221111 122346777788777642 12221 22
Q ss_pred CceEEeEEEEceEecC
Q 012788 323 GGYIRQIVISDAELYN 338 (456)
Q Consensus 323 ~g~v~nI~~~ni~~~~ 338 (456)
+.-..+.|.|..|.+
T Consensus 256 -~~yarvVf~~t~m~~ 270 (340)
T PLN02176 256 -GSYARVIFYRSRFSD 270 (340)
T ss_pred -CCCceEEEEecCcCC
Confidence 223566666666665
No 44
>PLN02497 probable pectinesterase
Probab=97.78 E-value=0.0043 Score=61.49 Aligned_cols=131 Identities=12% Similarity=0.123 Sum_probs=70.1
Q ss_pred EeeccEEEEeEEEEeCCcc-----------e-EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCc
Q 012788 183 ISSENVVVSNLTFLNAPAY-----------N-IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHD 250 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~-----------~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD 250 (456)
...+++..+|++|+|+... . -.....+...+.+|++.... |-+-. ....-.++||+|+..=|
T Consensus 112 v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~Q-----DTLy~-~~gRqyf~~C~IeG~VD 185 (331)
T PLN02497 112 TLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQ-----DTLWD-SDGRHYFKRCTIQGAVD 185 (331)
T ss_pred EecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccc-----cceee-CCCcEEEEeCEEEeccc
Confidence 3567889999999987431 1 11234677778888887642 33322 23356777888876444
Q ss_pred eEecCCCCCccccccCCCcccEEEEEEEEecCCC-------CeeEeccc-ccCcEEeEEEEeEEEECCcceEEEE-ecCC
Q 012788 251 AISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSG-------SSVAFGSE-MSGGISNVQVEKIHLYDSLNGIEFR-TTKG 321 (456)
Q Consensus 251 ~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~-------~gi~igs~-~~~~v~nI~v~n~~~~~~~~gi~ik-s~~g 321 (456)
-| -| .-...++||++..-.. .-|.-.+. .........|.||++.+.. -+.+. .|
T Consensus 186 FI---FG-----------~g~a~Fe~C~I~s~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~g-~~yLGRPW-- 248 (331)
T PLN02497 186 FI---FG-----------SGQSIYESCVIQVLGGQLEPGLAGFITAQGRTNPYDANGFVFKNCLVYGTG-SAYLGRPW-- 248 (331)
T ss_pred EE---cc-----------CceEEEEccEEEEecCcCCCCCceEEEecCCCCCCCCceEEEEccEEccCC-CEEEeCCC--
Confidence 33 11 3456777777764200 11221111 1122345677777777642 22222 22
Q ss_pred CCceEEeEEEEceEecC
Q 012788 322 RGGYIRQIVISDAELYN 338 (456)
Q Consensus 322 ~~g~v~nI~~~ni~~~~ 338 (456)
+.-..+.|.+..|.+
T Consensus 249 --~~ysrvvf~~t~m~~ 263 (331)
T PLN02497 249 --RGYSRVLFYNSNLTD 263 (331)
T ss_pred --CCCceEEEEecccCC
Confidence 123566666666665
No 45
>PLN02304 probable pectinesterase
Probab=97.69 E-value=0.012 Score=59.24 Aligned_cols=130 Identities=12% Similarity=0.117 Sum_probs=68.9
Q ss_pred EeeccEEEEeEEEEeCCcc---------e-EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceE
Q 012788 183 ISSENVVVSNLTFLNAPAY---------N-IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAI 252 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~---------~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~i 252 (456)
...+++..+|++|+|+... . -.....+...+.+|++.... |-+... ...-.++||+|+..=|-|
T Consensus 159 v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~Q-----DTLy~~-~gR~Yf~~CyIeG~VDFI 232 (379)
T PLN02304 159 VFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQ-----DTLHDD-RGRHYFKDCYIQGSIDFI 232 (379)
T ss_pred EECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEeccc-----ceeEeC-CCCEEEEeeEEcccccEE
Confidence 3467888999999987421 1 12235677778888877642 333322 234667788887644433
Q ss_pred ecCCCCCccccccCCCcccEEEEEEEEecCCCC-----------eeEeccc-ccCcEEeEEEEeEEEECCcceEEEE-ec
Q 012788 253 SLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGS-----------SVAFGSE-MSGGISNVQVEKIHLYDSLNGIEFR-TT 319 (456)
Q Consensus 253 ai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~-----------gi~igs~-~~~~v~nI~v~n~~~~~~~~gi~ik-s~ 319 (456)
- | .-...++||++... .. .|.-.+. ....-....|.||++.+.. -+.+. .|
T Consensus 233 F---G-----------~g~A~Fe~C~I~s~-~~~~~~g~~~~~G~ITA~~Rt~~~~~~GfvF~~C~itg~g-~vyLGRPW 296 (379)
T PLN02304 233 F---G-----------DARSLYENCRLISM-ANPVPPGSKSINGAVTAHGRTSKDENTGFSFVNCTIGGTG-RIWLGRAW 296 (379)
T ss_pred e---c-----------cceEEEEccEEEEe-cCCcccccccCceEEEecCCCCCCCCceEEEECCEEccCc-ceeecCCC
Confidence 1 1 34556777777642 11 1121111 1122345677777776532 12221 22
Q ss_pred CCCCceEEeEEEEceEecC
Q 012788 320 KGRGGYIRQIVISDAELYN 338 (456)
Q Consensus 320 ~g~~g~v~nI~~~ni~~~~ 338 (456)
.--..+.|.+..|.+
T Consensus 297 ----~pysrvVf~~t~m~~ 311 (379)
T PLN02304 297 ----RPYSRVVFAYTSMTD 311 (379)
T ss_pred ----CCcceEEEEecccCC
Confidence 223566666666655
No 46
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=97.60 E-value=0.014 Score=59.53 Aligned_cols=117 Identities=13% Similarity=0.141 Sum_probs=63.2
Q ss_pred EEEEeeccEEEEeEEEEeCCcc--------e-EEeecccceEEEEEEEECCCCCCCC------ceeeecCccCEEEEecE
Q 012788 180 VEFISSENVVVSNLTFLNAPAY--------N-IHPVYCSNVHIQNISVHAPPESPYT------VGIVPDSSDNVCIEDCI 244 (456)
Q Consensus 180 i~~~~~~nv~I~~v~i~ns~~~--------~-i~~~~~~nv~i~n~~i~~~~~~~n~------DGi~~~~s~nV~I~n~~ 244 (456)
......+++..+||+|+|+... . -.....+.+.+.+|+|...-+-.-. .+...+......++||+
T Consensus 200 Tv~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~Cy 279 (422)
T PRK10531 200 VFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSY 279 (422)
T ss_pred EEEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCE
Confidence 4445788999999999998532 1 1224567778888888764321111 01111122356778888
Q ss_pred EecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCC----CeeEe-cccccCcEEeEEEEeEEEECC
Q 012788 245 IAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSG----SSVAF-GSEMSGGISNVQVEKIHLYDS 310 (456)
Q Consensus 245 i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~----~gi~i-gs~~~~~v~nI~v~n~~~~~~ 310 (456)
|+..=|=|- | .-...++||++..-.. .|.-. .+.....-....|.||++.+.
T Consensus 280 IeG~VDFIF---G-----------~g~AvFenC~I~s~~~~~~~~g~ITA~~t~~~~~~GfvF~nCrit~~ 336 (422)
T PRK10531 280 IEGDVDFVF---G-----------RGAVVFDNTEFRVVNSRTQQEAYVFAPATLPNIYYGFLAINSRFNAS 336 (422)
T ss_pred EeecccEEc---c-----------CceEEEEcCEEEEecCCCCCceEEEecCCCCCCCCEEEEECCEEecC
Confidence 876444331 2 3566677777764201 11111 111112334577777877764
No 47
>PLN02634 probable pectinesterase
Probab=97.59 E-value=0.037 Score=55.37 Aligned_cols=130 Identities=12% Similarity=0.105 Sum_probs=71.7
Q ss_pred eeccEEEEeEEEEeCCcc---------e-EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEe
Q 012788 184 SSENVVVSNLTFLNAPAY---------N-IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAIS 253 (456)
Q Consensus 184 ~~~nv~I~~v~i~ns~~~---------~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~ia 253 (456)
..+++..+|++|+|+... . -.....+...+.+|++... -|-+-.. ...-.++||+|+..=|=|-
T Consensus 147 ~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~-----QDTL~~~-~gR~yf~~CyIeG~VDFIF 220 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGA-----QDTLCDD-AGRHYFKECYIEGSIDFIF 220 (359)
T ss_pred ECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecc-----cceeeeC-CCCEEEEeeEEcccccEEc
Confidence 467889999999987421 1 1123467788888888763 3333322 3456778888876444331
Q ss_pred cCCCCCccccccCCCcccEEEEEEEEecCCC--CeeEeccc-ccCcEEeEEEEeEEEECCcceEEEE-ecCCCCceEEeE
Q 012788 254 LKSGWDEYGIAYGRPTTDVHIRRVLLQSSSG--SSVAFGSE-MSGGISNVQVEKIHLYDSLNGIEFR-TTKGRGGYIRQI 329 (456)
Q Consensus 254 i~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~--~gi~igs~-~~~~v~nI~v~n~~~~~~~~gi~ik-s~~g~~g~v~nI 329 (456)
| .-...++||++..... .-|.-.+. ....-....|.||++.+.. -+.+. .| +.-..+
T Consensus 221 ---G-----------~g~a~Fe~C~I~s~~~~~g~ITA~~R~~~~~~~GfvF~~C~vtg~g-~~yLGRPW----~~yarv 281 (359)
T PLN02634 221 ---G-----------NGRSMYKDCELHSIASRFGSIAAHGRTCPEEKTGFAFVGCRVTGTG-PLYVGRAM----GQYSRI 281 (359)
T ss_pred ---C-----------CceEEEeccEEEEecCCCcEEEeCCCCCCCCCcEEEEEcCEEcCCc-ceEecCCC----CCcceE
Confidence 2 3455677887764211 12222221 1123346778888887642 12221 22 234567
Q ss_pred EEEceEecC
Q 012788 330 VISDAELYN 338 (456)
Q Consensus 330 ~~~ni~~~~ 338 (456)
.|.+..|.+
T Consensus 282 Vf~~t~l~~ 290 (359)
T PLN02634 282 VYAYTYFDA 290 (359)
T ss_pred EEEecccCC
Confidence 777777665
No 48
>PLN02665 pectinesterase family protein
Probab=97.59 E-value=0.018 Score=57.95 Aligned_cols=134 Identities=13% Similarity=0.107 Sum_probs=81.6
Q ss_pred EEEeeccEEEEeEEEEeCCc---------ce-EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCc
Q 012788 181 EFISSENVVVSNLTFLNAPA---------YN-IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHD 250 (456)
Q Consensus 181 ~~~~~~nv~I~~v~i~ns~~---------~~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD 250 (456)
....++++..+|++|+|+.. -. -.....+...+.||++... -|-+... ...-.++||+|+..=|
T Consensus 149 v~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~-----QDTL~~~-~gr~yf~~CyIeG~VD 222 (366)
T PLN02665 149 LIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGF-----QDTLCDD-KGRHFFKDCYIEGTVD 222 (366)
T ss_pred EEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccc-----cceeEeC-CCCEEEEeeEEeeccc
Confidence 34567889999999999642 11 1124568888999999874 3434332 3456788999987545
Q ss_pred eEecCCCCCccccccCCCcccEEEEEEEEecCCCCe----eEecccc-cCcEEeEEEEeEEEECCcceEEEE-ecCCCCc
Q 012788 251 AISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSS----VAFGSEM-SGGISNVQVEKIHLYDSLNGIEFR-TTKGRGG 324 (456)
Q Consensus 251 ~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~g----i~igs~~-~~~v~nI~v~n~~~~~~~~gi~ik-s~~g~~g 324 (456)
=|- | .-...+++|++... ..+ |.-.+.. ...-....|.||++.+....+.+. .| +
T Consensus 223 FIF---G-----------~g~a~fe~C~i~s~-~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~~~~yLGRpW----~ 283 (366)
T PLN02665 223 FIF---G-----------SGKSLYLNTELHVV-GDGGLRVITAQARNSEAEDSGFSFVHCKVTGTGTGAYLGRAW----M 283 (366)
T ss_pred eec---c-----------ccceeeEccEEEEe-cCCCcEEEEcCCCCCCCCCceEEEEeeEEecCCCceeecCCC----C
Confidence 432 2 35668888888753 332 2222211 123346789999998764233332 23 2
Q ss_pred eEEeEEEEceEecCc
Q 012788 325 YIRQIVISDAELYNI 339 (456)
Q Consensus 325 ~v~nI~~~ni~~~~~ 339 (456)
.-..+.|.+..|.+.
T Consensus 284 ~ysrvVf~~t~m~~~ 298 (366)
T PLN02665 284 SRPRVVFAYTEMSSV 298 (366)
T ss_pred CcceEEEEccccCCe
Confidence 345788888887763
No 49
>PLN02432 putative pectinesterase
Probab=97.48 E-value=0.036 Score=54.12 Aligned_cols=131 Identities=13% Similarity=0.090 Sum_probs=69.2
Q ss_pred EeeccEEEEeEEEEeCCcc----eEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCC
Q 012788 183 ISSENVVVSNLTFLNAPAY----NIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGW 258 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~----~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~ 258 (456)
...+++.++||+|+|...- --.....+...+.+|++... -|-+-.. ...-.++||+|+..=|-|- |
T Consensus 91 v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~-----QDTLy~~-~gr~yf~~c~I~G~VDFIF---G- 160 (293)
T PLN02432 91 VLASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSY-----QDTLLDD-TGRHYYRNCYIEGATDFIC---G- 160 (293)
T ss_pred EECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEecc-----cceeEEC-CCCEEEEeCEEEecccEEe---c-
Confidence 3467899999999997421 11223467777777777763 2333322 2345677787776544332 1
Q ss_pred CccccccCCCcccEEEEEEEEecCC--CCeeEecccc-cCcEEeEEEEeEEEECCcceEEEE-ecCCCCceEEeEEEEce
Q 012788 259 DEYGIAYGRPTTDVHIRRVLLQSSS--GSSVAFGSEM-SGGISNVQVEKIHLYDSLNGIEFR-TTKGRGGYIRQIVISDA 334 (456)
Q Consensus 259 ~~~g~~~~~~s~ni~I~n~~~~~~~--~~gi~igs~~-~~~v~nI~v~n~~~~~~~~gi~ik-s~~g~~g~v~nI~~~ni 334 (456)
.-...+++|++.... ...|.-.+.. ...-....|.||++.+.. .+.+. .| +.-..+.|.|.
T Consensus 161 ----------~g~a~Fe~c~i~s~~~~~g~itA~~r~~~~~~~Gfvf~~c~itg~g-~~yLGRpW----~~~srvvf~~t 225 (293)
T PLN02432 161 ----------NAASLFEKCHLHSLSPNNGAITAQQRTSASENTGFTFLGCKLTGAG-TTYLGRPW----GPYSRVVFALS 225 (293)
T ss_pred ----------CceEEEEeeEEEEecCCCCeEEecCCCCCCCCceEEEEeeEEcccc-hhhccCCC----CCccEEEEEec
Confidence 345677777776420 1222222211 122335677777776532 11111 12 22356666666
Q ss_pred EecC
Q 012788 335 ELYN 338 (456)
Q Consensus 335 ~~~~ 338 (456)
.|.+
T Consensus 226 ~l~~ 229 (293)
T PLN02432 226 YMSS 229 (293)
T ss_pred ccCC
Confidence 6654
No 50
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.41 E-value=0.023 Score=59.62 Aligned_cols=134 Identities=10% Similarity=0.054 Sum_probs=76.2
Q ss_pred EEEEeeccEEEEeEEEEeCCcc----e-EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEec
Q 012788 180 VEFISSENVVVSNLTFLNAPAY----N-IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISL 254 (456)
Q Consensus 180 i~~~~~~nv~I~~v~i~ns~~~----~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai 254 (456)
-.....+++..+|++|+|+..- . -.....+...+.+|++.... |-+... +..-..++|+|...=|-|
T Consensus 307 Tv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQ-----DTLy~~-~~Rqyy~~C~I~GtVDFI-- 378 (529)
T PLN02170 307 TVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQ-----DSLYTH-SKRQFYRETDITGTVDFI-- 378 (529)
T ss_pred EEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccC-----CcceeC-CCCEEEEeeEEcccccee--
Confidence 3444577899999999997431 1 12245778888888888743 334333 334577888888644433
Q ss_pred CCCCCccccccCCCcccEEEEEEEEecCCC----CeeEeccc-ccCcEEeEEEEeEEEECCcceEEEE-ecCCCCceEEe
Q 012788 255 KSGWDEYGIAYGRPTTDVHIRRVLLQSSSG----SSVAFGSE-MSGGISNVQVEKIHLYDSLNGIEFR-TTKGRGGYIRQ 328 (456)
Q Consensus 255 ~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~----~gi~igs~-~~~~v~nI~v~n~~~~~~~~gi~ik-s~~g~~g~v~n 328 (456)
-| .-...++||.+..... .-|.-.+. ....-..+.|.||++.+.. -..++ .| ..-..
T Consensus 379 -FG-----------~a~avFq~C~I~~~~~~~~~g~ITAq~R~~~~~~~Gfvf~~C~it~~~-~~yLGRPW----~~ysr 441 (529)
T PLN02170 379 -FG-----------NSAVVFQSCNIAARKPSGDRNYVTAQGRSDPNQNTGISIHNCRITAES-MTYLGRPW----KEYSR 441 (529)
T ss_pred -cc-----------cceEEEeccEEEEecCCCCceEEEecCCCCCCCCceEEEEeeEEecCC-ceeeeCCC----CCCce
Confidence 12 3567788888764211 11221111 1123456788888887753 22222 22 22356
Q ss_pred EEEEceEecC
Q 012788 329 IVISDAELYN 338 (456)
Q Consensus 329 I~~~ni~~~~ 338 (456)
+.|.+..|.+
T Consensus 442 vVf~~t~l~~ 451 (529)
T PLN02170 442 TVVMQSFIDG 451 (529)
T ss_pred EEEEecccCC
Confidence 6777766665
No 51
>PLN02671 pectinesterase
Probab=97.35 E-value=0.045 Score=54.86 Aligned_cols=132 Identities=13% Similarity=0.124 Sum_probs=70.0
Q ss_pred EEeeccEEEEeEEEEeCCcc--------e-EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceE
Q 012788 182 FISSENVVVSNLTFLNAPAY--------N-IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAI 252 (456)
Q Consensus 182 ~~~~~nv~I~~v~i~ns~~~--------~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~i 252 (456)
....+++..+|++|+|.... . -.....+.+.+.+|++.... |-+... ...-.++||+|+..=|=|
T Consensus 150 ~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~Q-----DTLy~~-~gR~yf~~CyIeG~VDFI 223 (359)
T PLN02671 150 TIESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQ-----DTLLDE-TGSHYFYQCYIQGSVDFI 223 (359)
T ss_pred EEECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEeccc-----cccEeC-CCcEEEEecEEEEeccEE
Confidence 34567888889999887210 1 11234677778888887632 333222 234567788877644433
Q ss_pred ecCCCCCccccccCCCcccEEEEEEEEecCC--CCeeEeccc-ccCcEEeEEEEeEEEECCcceEEEE-ecCCCCceEEe
Q 012788 253 SLKSGWDEYGIAYGRPTTDVHIRRVLLQSSS--GSSVAFGSE-MSGGISNVQVEKIHLYDSLNGIEFR-TTKGRGGYIRQ 328 (456)
Q Consensus 253 ai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~--~~gi~igs~-~~~~v~nI~v~n~~~~~~~~gi~ik-s~~g~~g~v~n 328 (456)
- | .-...++||++.... ...|.-.+. ....-....|.||++.+.. .+.+. .|. .-..
T Consensus 224 F---G-----------~g~A~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~itg~g-~vyLGRPW~----~yar 284 (359)
T PLN02671 224 F---G-----------NAKSLYQDCVIQSTAKRSGAIAAHHRDSPTEDTGFSFVNCVINGTG-KIYLGRAWG----NYSR 284 (359)
T ss_pred e---c-----------ceeEEEeccEEEEecCCCeEEEeeccCCCCCCccEEEEccEEccCc-cEEEeCCCC----CCce
Confidence 2 1 345677777776420 112222221 1122345677777776532 22232 231 2356
Q ss_pred EEEEceEecC
Q 012788 329 IVISDAELYN 338 (456)
Q Consensus 329 I~~~ni~~~~ 338 (456)
+.|.|..|.+
T Consensus 285 vVf~~t~m~~ 294 (359)
T PLN02671 285 TVYSNCFIAD 294 (359)
T ss_pred EEEEecccCC
Confidence 6666666665
No 52
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.26 E-value=0.0049 Score=60.63 Aligned_cols=132 Identities=11% Similarity=0.156 Sum_probs=72.9
Q ss_pred EeeccEEEEeEEEEeCCcc------eEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCC
Q 012788 183 ISSENVVVSNLTFLNAPAY------NIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKS 256 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~------~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s 256 (456)
...+++.+++++|+|+... .+. ...+.+.+.+|++... -|-+... ..+..++||+|+..-|-|-
T Consensus 84 v~a~~f~~~nit~~Nt~g~~~~qAvAl~-~~~d~~~f~~c~~~g~-----QDTL~~~-~~r~y~~~c~IeG~vDFIf--- 153 (298)
T PF01095_consen 84 VNADDFTAENITFENTAGPSGGQAVALR-VSGDRAAFYNCRFLGY-----QDTLYAN-GGRQYFKNCYIEGNVDFIF--- 153 (298)
T ss_dssp E-STT-EEEEEEEEEHCSGSG----SEE-ET-TSEEEEEEEEE-S-----TT-EEE--SSEEEEES-EEEESEEEEE---
T ss_pred ccccceeeeeeEEecCCCCcccceeeee-ecCCcEEEEEeEEccc-----cceeeec-cceeEEEeeEEEecCcEEE---
Confidence 3578999999999996422 233 3567889999999874 4555543 3457889999998666553
Q ss_pred CCCccccccCCCcccEEEEEEEEecCCC----Ce-eEeccc-ccCcEEeEEEEeEEEECCcc--------eEEEE-ecCC
Q 012788 257 GWDEYGIAYGRPTTDVHIRRVLLQSSSG----SS-VAFGSE-MSGGISNVQVEKIHLYDSLN--------GIEFR-TTKG 321 (456)
Q Consensus 257 g~~~~g~~~~~~s~ni~I~n~~~~~~~~----~g-i~igs~-~~~~v~nI~v~n~~~~~~~~--------gi~ik-s~~g 321 (456)
| .....++||++..... .| |.-.+. ....-...+|.||++..... ...+. .|
T Consensus 154 G-----------~~~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vF~~c~i~~~~~~~~~~~~~~~yLGRpW-- 220 (298)
T PF01095_consen 154 G-----------NGTAVFENCTIHSRRPGGGQGGYITAQGRTSPSQKSGFVFDNCTITGDSGVSPSYSDGSVYLGRPW-- 220 (298)
T ss_dssp E-----------SSEEEEES-EEEE--SSTSSTEEEEEE---CTTSS-EEEEES-EEEESTTTCGGCCCSTEEEE--S--
T ss_pred C-----------CeeEEeeeeEEEEeccccccceeEEeCCccccCCCeEEEEEEeEEecCccccccccceeEEecCcc--
Confidence 1 3456788888875311 11 222221 12345678999999986531 22232 22
Q ss_pred CCceEEeEEEEceEecCc
Q 012788 322 RGGYIRQIVISDAELYNI 339 (456)
Q Consensus 322 ~~g~v~nI~~~ni~~~~~ 339 (456)
+.-..+.|.|..|.+.
T Consensus 221 --~~~s~vvf~~t~m~~~ 236 (298)
T PF01095_consen 221 --GPYSRVVFINTYMDDH 236 (298)
T ss_dssp --SEETEEEEES-EE-TT
T ss_pred --cceeeEEEEccccCCe
Confidence 2345788888888874
No 53
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.10 E-value=0.091 Score=55.37 Aligned_cols=138 Identities=9% Similarity=0.090 Sum_probs=78.5
Q ss_pred EEeeccEEEEeEEEEeCCcc----eE-EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCC
Q 012788 182 FISSENVVVSNLTFLNAPAY----NI-HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKS 256 (456)
Q Consensus 182 ~~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s 256 (456)
....+++..+|++|+|+..- .+ .....+...+.+|++... -|-+.... ..-..+||+|+..=|-| -
T Consensus 289 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~-----QDTLy~~~-~Rqyy~~C~I~GtVDFI---F 359 (520)
T PLN02201 289 AVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGY-----QDTLYTHT-MRQFYRECRITGTVDFI---F 359 (520)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeecc-----CCeeEeCC-CCEEEEeeEEeecccEE---e
Confidence 34577899999999997431 11 224567888888888874 34444433 34567888888754433 1
Q ss_pred CCCccccccCCCcccEEEEEEEEecCC-----CCeeEeccc-ccCcEEeEEEEeEEEECCcceEE----EEecCCCC-ce
Q 012788 257 GWDEYGIAYGRPTTDVHIRRVLLQSSS-----GSSVAFGSE-MSGGISNVQVEKIHLYDSLNGIE----FRTTKGRG-GY 325 (456)
Q Consensus 257 g~~~~g~~~~~~s~ni~I~n~~~~~~~-----~~gi~igs~-~~~~v~nI~v~n~~~~~~~~gi~----iks~~g~~-g~ 325 (456)
| .-...++||++..-. ...|.-.+. ....-....|.||++.+...... .++.=|+. +.
T Consensus 360 G-----------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~C~it~~~~~~~~~~~~~~yLGRPW~~ 428 (520)
T PLN02201 360 G-----------DATAVFQNCQILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFSNISADTDLLPYLNTTATYLGRPWKL 428 (520)
T ss_pred c-----------CceEEEEccEEEEecCCCCCCceEEecCCCCCCCCcEEEEEeeEEecCccccccccccceEeecCCCC
Confidence 2 456778888887420 122332221 11234568888888876432111 11111221 33
Q ss_pred EEeEEEEceEecCc
Q 012788 326 IRQIVISDAELYNI 339 (456)
Q Consensus 326 v~nI~~~ni~~~~~ 339 (456)
-+.+.|-+..|.+.
T Consensus 429 ysrvv~~~t~l~~~ 442 (520)
T PLN02201 429 YSRTVFMQNYMSDA 442 (520)
T ss_pred CceEEEEecCcCCe
Confidence 46677777777663
No 54
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=97.06 E-value=0.1 Score=55.06 Aligned_cols=139 Identities=12% Similarity=0.105 Sum_probs=78.6
Q ss_pred EEEeeccEEEEeEEEEeCCcc----eEE-eecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecC
Q 012788 181 EFISSENVVVSNLTFLNAPAY----NIH-PVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLK 255 (456)
Q Consensus 181 ~~~~~~nv~I~~v~i~ns~~~----~i~-~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~ 255 (456)
.....+++..+|++|+|.... .+- -...+...+.+|+|...- |-+... +..-..++|+|+..=|-|
T Consensus 300 ~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~Q-----DTLy~~-~~Rqyy~~C~IeGtVDFI--- 370 (530)
T PLN02933 300 VGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQ-----DTLYVH-SAKQFYRECDIYGTIDFI--- 370 (530)
T ss_pred EEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecc-----cccccC-CCceEEEeeEEeccccee---
Confidence 344577899999999997432 121 245788888899888743 334333 234578889888643433
Q ss_pred CCCCccccccCCCcccEEEEEEEEecCC-----CCeeEecccc-cCcEEeEEEEeEEEECCcceEEE----EecCCCC-c
Q 012788 256 SGWDEYGIAYGRPTTDVHIRRVLLQSSS-----GSSVAFGSEM-SGGISNVQVEKIHLYDSLNGIEF----RTTKGRG-G 324 (456)
Q Consensus 256 sg~~~~g~~~~~~s~ni~I~n~~~~~~~-----~~gi~igs~~-~~~v~nI~v~n~~~~~~~~gi~i----ks~~g~~-g 324 (456)
-| .-...++||++..-. ...|.-.+.. ...-..+.|.||++.+....... ++.=|+. +
T Consensus 371 FG-----------~a~avFq~C~i~~~~~~~~~~~~iTAq~r~~~~~~tGfvf~~C~it~~~~~~~~~~~~~~yLGRPW~ 439 (530)
T PLN02933 371 FG-----------NAAVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQPTGISIISSRILAAPDLIPVKENFKAYLGRPWR 439 (530)
T ss_pred cc-----------CceEEEeccEEEEeccCCCCceEEEecCCCCCCCCceEEEEeeEEecCCcccccccccceEeccCCC
Confidence 22 355778888886421 1122222221 12345688888888864321111 1111221 2
Q ss_pred eEEeEEEEceEecCc
Q 012788 325 YIRQIVISDAELYNI 339 (456)
Q Consensus 325 ~v~nI~~~ni~~~~~ 339 (456)
.-+.+.|.+..|.+.
T Consensus 440 ~ysrvVf~~s~l~~~ 454 (530)
T PLN02933 440 KYSRTVIIKSFIDDL 454 (530)
T ss_pred CCceEEEEecccCCe
Confidence 346777777777653
No 55
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.05 E-value=0.012 Score=54.53 Aligned_cols=128 Identities=25% Similarity=0.230 Sum_probs=77.0
Q ss_pred EEEE-eeccEEEEeEEEEe---------------CCcceEEeecccceEEEEEEEECCCC---CCCCce-eeec-CccCE
Q 012788 180 VEFI-SSENVVVSNLTFLN---------------APAYNIHPVYCSNVHIQNISVHAPPE---SPYTVG-IVPD-SSDNV 238 (456)
Q Consensus 180 i~~~-~~~nv~I~~v~i~n---------------s~~~~i~~~~~~nv~i~n~~i~~~~~---~~n~DG-i~~~-~s~nV 238 (456)
+.+. .++||.|++++|++ .....+.+..+++|.|+.|++..... ....|| +++. .+++|
T Consensus 39 ~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~v 118 (200)
T PF00544_consen 39 LRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNV 118 (200)
T ss_dssp EEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEE
T ss_pred EEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceE
Confidence 4444 89999999999998 24457889999999999999998621 111455 5664 58899
Q ss_pred EEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEEC-CcceEEEE
Q 012788 239 CIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYD-SLNGIEFR 317 (456)
Q Consensus 239 ~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~-~~~gi~ik 317 (456)
+|.+|.|...+.+..+++. +.. .... ..++++.+|.+.....+.-.+. . -.+.+.|+.+.+ ...++...
T Consensus 119 TiS~n~f~~~~k~~l~G~~-d~~--~~~~-~~~vT~hhN~f~~~~~R~P~~r----~--G~~Hv~NN~~~~~~~y~i~~~ 188 (200)
T PF00544_consen 119 TISNNIFDNHNKTMLIGSS-DSN--STDR-GLRVTFHHNYFANTNSRNPRVR----F--GYVHVYNNYYYNWSGYAIGAR 188 (200)
T ss_dssp EEES-EEEEEEETCEESSC-TTC--GGGT-TEEEEEES-EEEEEEE-TTEEC----S--CEEEEES-EEEEECSESEEEE
T ss_pred EEEchhccccccccccCCC-CCc--cccC-CceEEEEeEEECchhhCCCccc----c--cEEEEEEeeeECCCCEEEEcc
Confidence 9999999986555444442 111 1122 3788988888865312211222 1 247788887754 33455554
No 56
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=97.04 E-value=0.11 Score=55.24 Aligned_cols=108 Identities=11% Similarity=0.101 Sum_probs=62.3
Q ss_pred EeeccEEEEeEEEEeCCcc----eE-EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCC
Q 012788 183 ISSENVVVSNLTFLNAPAY----NI-HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSG 257 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg 257 (456)
...+++..+|++|+|...- .+ .-...+.+.+.+|+|...- |-+... +.....++|+|...=|-| -|
T Consensus 327 v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~Q-----DTLy~~-~~rq~y~~C~I~GtVDFI---FG 397 (553)
T PLN02708 327 VLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQ-----DTLYAH-SLRQFYKSCRIQGNVDFI---FG 397 (553)
T ss_pred EEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeecc-----ccceeC-CCceEEEeeEEeecCCEE---ec
Confidence 4567899999999997531 11 1235677888888887743 334333 234567888887644433 12
Q ss_pred CCccccccCCCcccEEEEEEEEecC---------CCCeeEeccc-ccCcEEeEEEEeEEEECC
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSS---------SGSSVAFGSE-MSGGISNVQVEKIHLYDS 310 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~---------~~~gi~igs~-~~~~v~nI~v~n~~~~~~ 310 (456)
.-...++||.+..- ....|...+. ....-..+.|.||++.+.
T Consensus 398 -----------~a~avfq~c~i~~~~~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~C~it~~ 449 (553)
T PLN02708 398 -----------NSAAVFQDCAILIAPRQLKPEKGENNAVTAHGRTDPAQSTGFVFQNCLINGT 449 (553)
T ss_pred -----------CceEEEEccEEEEeccccCCCCCCceEEEeCCCCCCCCCceEEEEccEEecC
Confidence 45677778877631 0122332221 112345677888888764
No 57
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=97.04 E-value=0.1 Score=55.98 Aligned_cols=138 Identities=12% Similarity=0.117 Sum_probs=78.8
Q ss_pred EEeeccEEEEeEEEEeCCcc----eE-EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCC
Q 012788 182 FISSENVVVSNLTFLNAPAY----NI-HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKS 256 (456)
Q Consensus 182 ~~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s 256 (456)
....+++..+|++|+|...- .+ .....+...+.+|+|.... |-+... +..-..+||+|...=|-| -
T Consensus 356 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI---F 426 (587)
T PLN02484 356 AATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQ-----DTLYVH-SNRQFFRECDIYGTVDFI---F 426 (587)
T ss_pred EEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccC-----cccccC-CCcEEEEecEEEecccee---c
Confidence 34577899999999997431 12 2245788888999988743 334332 345678899988643333 2
Q ss_pred CCCccccccCCCcccEEEEEEEEecCC-----CCeeEecccc-cCcEEeEEEEeEEEECCcceE----EEEecCCCC-ce
Q 012788 257 GWDEYGIAYGRPTTDVHIRRVLLQSSS-----GSSVAFGSEM-SGGISNVQVEKIHLYDSLNGI----EFRTTKGRG-GY 325 (456)
Q Consensus 257 g~~~~g~~~~~~s~ni~I~n~~~~~~~-----~~gi~igs~~-~~~v~nI~v~n~~~~~~~~gi----~iks~~g~~-g~ 325 (456)
| .-...++||++..-. ..-|.-.+.. ...-..+.|.||++.+...-. ..++.=|+. ..
T Consensus 427 G-----------~a~avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ 495 (587)
T PLN02484 427 G-----------NAAVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILAASDLAASKGSFPTYLGRPWKL 495 (587)
T ss_pred c-----------cceeEEeccEEEEecCCCCCceEEEecCCCCCCCCcEEEEEeeEEecCCccccccCccceeccCCCCC
Confidence 2 466778888886420 1122222211 123457888999887653210 112222222 33
Q ss_pred EEeEEEEceEecCc
Q 012788 326 IRQIVISDAELYNI 339 (456)
Q Consensus 326 v~nI~~~ni~~~~~ 339 (456)
.+.+.|-+..|.+.
T Consensus 496 ysrvV~~~s~i~~~ 509 (587)
T PLN02484 496 YSRTVYMMSYMGDH 509 (587)
T ss_pred CceEEEEecccCCe
Confidence 46677777777653
No 58
>PLN02916 pectinesterase family protein
Probab=97.01 E-value=0.12 Score=54.13 Aligned_cols=139 Identities=15% Similarity=0.107 Sum_probs=78.9
Q ss_pred EEEeeccEEEEeEEEEeCCcc----eE-EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecC
Q 012788 181 EFISSENVVVSNLTFLNAPAY----NI-HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLK 255 (456)
Q Consensus 181 ~~~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~ 255 (456)
.....+++..+|++|+|+... .+ .-...+...+.+|+|... -|-+... +..-..+||+|+..=|-|
T Consensus 272 ~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~-----QDTLy~~-~~Rqyy~~C~I~GtVDFI--- 342 (502)
T PLN02916 272 FGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGY-----QDTLFVH-SLRQFYRDCHIYGTIDFI--- 342 (502)
T ss_pred EEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecc-----CceeEeC-CCCEEEEecEEeccccee---
Confidence 344567899999999997432 11 223578888888988874 3444443 334678888888754433
Q ss_pred CCCCccccccCCCcccEEEEEEEEecCC-----CCeeEeccc-ccCcEEeEEEEeEEEECCcceE----EEEecCCCC-c
Q 012788 256 SGWDEYGIAYGRPTTDVHIRRVLLQSSS-----GSSVAFGSE-MSGGISNVQVEKIHLYDSLNGI----EFRTTKGRG-G 324 (456)
Q Consensus 256 sg~~~~g~~~~~~s~ni~I~n~~~~~~~-----~~gi~igs~-~~~~v~nI~v~n~~~~~~~~gi----~iks~~g~~-g 324 (456)
-| .-...++||++.... ..-|.-.+. ....-..+.|.||++.+..... ..++.=|+. +
T Consensus 343 FG-----------~a~avFq~C~I~~~~~~~~~~g~ITAq~r~~~~~~tGfvf~~C~it~~~~~~~~~g~~~~yLGRPW~ 411 (502)
T PLN02916 343 FG-----------DAAVVFQNCDIFVRRPMDHQGNMITAQGRDDPHENTGISIQHSRVRASPEFEAVKGRFKSFLGRPWK 411 (502)
T ss_pred cc-----------CceEEEecCEEEEecCCCCCcceEEecCCCCCCCCcEEEEEeeEEecCccccccccccceEeecCCC
Confidence 12 466778888876421 112222221 1123457888888888753211 011111221 2
Q ss_pred eEEeEEEEceEecCc
Q 012788 325 YIRQIVISDAELYNI 339 (456)
Q Consensus 325 ~v~nI~~~ni~~~~~ 339 (456)
.-+.+.|-+..|.+.
T Consensus 412 ~ysrvVf~~t~~~~~ 426 (502)
T PLN02916 412 KYSRTVFLKTDLDGL 426 (502)
T ss_pred CCceEEEEecccCCe
Confidence 346777777777663
No 59
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=97.01 E-value=0.072 Score=56.46 Aligned_cols=133 Identities=10% Similarity=0.058 Sum_probs=69.5
Q ss_pred EEEeeccEEEEeEEEEeCCcc----e-EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecC
Q 012788 181 EFISSENVVVSNLTFLNAPAY----N-IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLK 255 (456)
Q Consensus 181 ~~~~~~nv~I~~v~i~ns~~~----~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~ 255 (456)
.....+++..+|++|+|.... . -.....+.+.+.+|+|...- |-+... ...-..+||+|...=|-|
T Consensus 314 ~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~Q-----DTLy~~-~~rqyy~~C~I~GtVDFI--- 384 (537)
T PLN02506 314 VAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQ-----DTLYAH-SLRQFYRECEIYGTIDFI--- 384 (537)
T ss_pred EEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeccc-----ccceec-CCceEEEeeEEecccceE---
Confidence 345678899999999998431 1 11234677777777777632 333332 234567777777643332
Q ss_pred CCCCccccccCCCcccEEEEEEEEecCCC-----CeeEeccc-ccCcEEeEEEEeEEEECCcceEEEE-ecCCCCceEEe
Q 012788 256 SGWDEYGIAYGRPTTDVHIRRVLLQSSSG-----SSVAFGSE-MSGGISNVQVEKIHLYDSLNGIEFR-TTKGRGGYIRQ 328 (456)
Q Consensus 256 sg~~~~g~~~~~~s~ni~I~n~~~~~~~~-----~gi~igs~-~~~~v~nI~v~n~~~~~~~~gi~ik-s~~g~~g~v~n 328 (456)
-| .-...++||++..-.. ..|.-.+. ....-..+.|.||++.+.. ...++ .| +.-..
T Consensus 385 FG-----------~a~avfq~C~i~~r~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~-~~yLGRPW----~~~sr 448 (537)
T PLN02506 385 FG-----------NGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSYVLATQ-PTYLGRPW----KQYSR 448 (537)
T ss_pred cc-----------CceeEEeccEEEEccCCCCCCceEEccCCCCCCCCcEEEEEcCEEccCC-ceEEecCC----CCCce
Confidence 11 3456677777764200 12222111 1122345677777776532 22221 22 22355
Q ss_pred EEEEceEecC
Q 012788 329 IVISDAELYN 338 (456)
Q Consensus 329 I~~~ni~~~~ 338 (456)
++|-+..|.+
T Consensus 449 ~v~~~t~l~~ 458 (537)
T PLN02506 449 TVFMNTYMSQ 458 (537)
T ss_pred EEEEecCCCC
Confidence 6666666554
No 60
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=96.98 E-value=0.025 Score=55.13 Aligned_cols=123 Identities=11% Similarity=0.035 Sum_probs=79.2
Q ss_pred EEEeeeeeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEeCCcceEEeecccceEEEEEEE
Q 012788 139 INGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISV 218 (456)
Q Consensus 139 i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i 218 (456)
|+..+..++.|.| -+|.|.... ....|...|++.++++.+|.+-.|.-- ..+|....++...|++.++
T Consensus 123 i~l~~s~d~~i~~--n~i~G~~~~---------r~~~rGnGI~vyNa~~a~V~~ndisy~-rDgIy~~~S~~~~~~gnr~ 190 (408)
T COG3420 123 IYLHGSADVRIEG--NTIQGLADL---------RVAERGNGIYVYNAPGALVVGNDISYG-RDGIYSDTSQHNVFKGNRF 190 (408)
T ss_pred EEEeccCceEEEe--eEEeecccc---------chhhccCceEEEcCCCcEEEcCccccc-cceEEEcccccceecccch
Confidence 3345566677776 366554321 123456678888888877777665432 3466666666666666666
Q ss_pred ECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEec
Q 012788 219 HAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFG 290 (456)
Q Consensus 219 ~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~ig 290 (456)
... .-|.|...+++..|+++..+...-|.++.- +++++|+|+.-++..++||-+-
T Consensus 191 ~~~-----RygvHyM~t~~s~i~dn~s~~N~vG~ALMy------------s~~l~V~~nrS~Gnrd~Gilln 245 (408)
T COG3420 191 RDL-----RYGVHYMYTNDSRISDNSSRDNRVGYALMY------------SDRLKVSDNRSSGNRDHGILLN 245 (408)
T ss_pred hhe-----eeeEEEEeccCcEeecccccCCcceEEEEE------------eccEEEEcCcccCccccceeee
Confidence 542 346777777777777777776666666654 7788888887777667777654
No 61
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=96.97 E-value=0.082 Score=56.43 Aligned_cols=137 Identities=15% Similarity=0.099 Sum_probs=80.6
Q ss_pred EeeccEEEEeEEEEeCCcc----eE-EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCC
Q 012788 183 ISSENVVVSNLTFLNAPAY----NI-HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSG 257 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg 257 (456)
...+++..+|++|+|...- .+ .-...+...+.+|+|... -|-+.... ..-..+||+|...=|-| -|
T Consensus 337 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~-----QDTLy~~~-~Rqyy~~C~I~GtVDFI---FG 407 (566)
T PLN02713 337 VVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAY-----QDTLYTHS-LRQFYRECDIYGTVDFI---FG 407 (566)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccC-----CcceEECC-CCEEEEeeEEeccccee---cc
Confidence 4568999999999997431 11 224678888999999874 34454433 45688999998654433 22
Q ss_pred CCccccccCCCcccEEEEEEEEecCC-----CCeeEeccc-ccCcEEeEEEEeEEEECCcceE----EEEecCCCC-ceE
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSSS-----GSSVAFGSE-MSGGISNVQVEKIHLYDSLNGI----EFRTTKGRG-GYI 326 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~~-----~~gi~igs~-~~~~v~nI~v~n~~~~~~~~gi----~iks~~g~~-g~v 326 (456)
.-...++||.+..-. ...|.-.+. ....-..+.|.||++....... ..++.=|+. ..-
T Consensus 408 -----------~a~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~y 476 (566)
T PLN02713 408 -----------NAAVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAADDLASSNYTVKTYLGRPWKEY 476 (566)
T ss_pred -----------cceEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecCCcccccccccceeeecCCCCc
Confidence 467788888886420 112222221 1223457899999998653210 111211221 234
Q ss_pred EeEEEEceEecCc
Q 012788 327 RQIVISDAELYNI 339 (456)
Q Consensus 327 ~nI~~~ni~~~~~ 339 (456)
+.+.|.+..|.+.
T Consensus 477 sr~V~~~s~~~~~ 489 (566)
T PLN02713 477 SRTVVMQSYIDGL 489 (566)
T ss_pred ceEEEEecccCCe
Confidence 5677777777663
No 62
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=96.96 E-value=0.00092 Score=48.14 Aligned_cols=39 Identities=26% Similarity=0.185 Sum_probs=22.1
Q ss_pred ccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCCceeeeeeE
Q 012788 48 AVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFN 91 (456)
Q Consensus 48 A~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l~ 91 (456)
|+|||+||||+||.+|+++. ..|-.|---.-||.+.+|-
T Consensus 1 A~GDGvtdDt~A~~a~l~a~-----~~g~~IDg~GlTykVs~lP 39 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEAS-----PVGRKIDGAGLTYKVSSLP 39 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS------TTS-EE-TT-EEEESS--
T ss_pred CCCccccCcHHHHHHHHhcc-----CCCeEEecCCceEEEeeCc
Confidence 79999999999999999864 4454444333378766543
No 63
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=96.94 E-value=0.067 Score=56.77 Aligned_cols=138 Identities=12% Similarity=0.042 Sum_probs=74.2
Q ss_pred EEEeeccEEEEeEEEEeCCcc----eE-EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecC
Q 012788 181 EFISSENVVVSNLTFLNAPAY----NI-HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLK 255 (456)
Q Consensus 181 ~~~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~ 255 (456)
.....+++..+|++|+|.... .+ .....+...+.+|+|...- |-+... +..-..+||+|...=|-|
T Consensus 308 ~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQ-----DTLy~~-~~rq~y~~c~I~GtVDFI--- 378 (538)
T PLN03043 308 FAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQ-----DTLYVH-SLRQFYRECDIYGTVDFI--- 378 (538)
T ss_pred EEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccC-----cccccC-CCcEEEEeeEEeeccceE---
Confidence 344568899999999997532 12 2245677888888888743 333332 234677888887643333
Q ss_pred CCCCccccccCCCcccEEEEEEEEecCC-----CCeeEecccc-cCcEEeEEEEeEEEECCcceE----EEEecCCCC-c
Q 012788 256 SGWDEYGIAYGRPTTDVHIRRVLLQSSS-----GSSVAFGSEM-SGGISNVQVEKIHLYDSLNGI----EFRTTKGRG-G 324 (456)
Q Consensus 256 sg~~~~g~~~~~~s~ni~I~n~~~~~~~-----~~gi~igs~~-~~~v~nI~v~n~~~~~~~~gi----~iks~~g~~-g 324 (456)
-| .-...++||++..-. ...|.-.+.. ...-..+.|.||++.+...-. ..++.=|+. .
T Consensus 379 FG-----------~a~avfq~c~i~~r~~~~~~~~~iTA~~r~~~~~~tG~~~~~c~i~~~~~~~~~~~~~~~yLGRpW~ 447 (538)
T PLN03043 379 FG-----------NAAAIFQNCNLYARKPMANQKNAFTAQGRTDPNQNTGISIINCTIEAAPDLAMDPNSTMNFLGRPWK 447 (538)
T ss_pred ee-----------cceeeeeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEecEEecCCcccccccccceeccCCCC
Confidence 12 456677788775410 1223322211 122346778888877643110 011221221 2
Q ss_pred eEEeEEEEceEecC
Q 012788 325 YIRQIVISDAELYN 338 (456)
Q Consensus 325 ~v~nI~~~ni~~~~ 338 (456)
.-+.+.|-+..|.+
T Consensus 448 ~ysr~v~~~s~i~~ 461 (538)
T PLN03043 448 PYSRTVYMQSYIGD 461 (538)
T ss_pred CCceEEEEecccCC
Confidence 24556666666655
No 64
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=96.93 E-value=0.092 Score=56.10 Aligned_cols=136 Identities=10% Similarity=0.080 Sum_probs=77.1
Q ss_pred EeeccEEEEeEEEEeCCcc----e-EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCC
Q 012788 183 ISSENVVVSNLTFLNAPAY----N-IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSG 257 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~----~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg 257 (456)
...+++..+|++|+|+..- . -.....+...+.+|+|.... |-+.... ..-..+||+|...=|-| -|
T Consensus 342 v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~Q-----DTLy~~~-~rq~y~~C~I~GtvDFI---FG 412 (565)
T PLN02468 342 VFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQ-----DTLYAHA-QRQFYRECNIYGTVDFI---FG 412 (565)
T ss_pred EECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEecc-----chhccCC-CceEEEeeEEeccccee---ec
Confidence 3567899999999997532 1 12246788888888888743 3333332 34568888888643433 12
Q ss_pred CCccccccCCCcccEEEEEEEEecCC-----CCeeEeccc-ccCcEEeEEEEeEEEECCcceEEEEecCCCC-ceEEeEE
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSSS-----GSSVAFGSE-MSGGISNVQVEKIHLYDSLNGIEFRTTKGRG-GYIRQIV 330 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~~-----~~gi~igs~-~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~-g~v~nI~ 330 (456)
.-...++||.+..-. ...|.-.+. ....-..+.|.||++......-..++.=|+. ..-+.+.
T Consensus 413 -----------~a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~yLGRPW~~~sr~v 481 (565)
T PLN02468 413 -----------NSAVVFQNCNILPRRPMKGQQNTITAQGRTDPNQNTGISIQNCTILPLGDLTSVKTFLGRPWKNYSTTV 481 (565)
T ss_pred -----------cceEEEeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEccEEecCCCccccceeeecCCCCCceEE
Confidence 466778888886320 122222221 1223456888888888653211122222221 2344566
Q ss_pred EEceEecC
Q 012788 331 ISDAELYN 338 (456)
Q Consensus 331 ~~ni~~~~ 338 (456)
|-+..|.+
T Consensus 482 ~~~s~~~~ 489 (565)
T PLN02468 482 IMHSMMGS 489 (565)
T ss_pred EEecccCC
Confidence 76666665
No 65
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=96.93 E-value=0.097 Score=56.65 Aligned_cols=137 Identities=12% Similarity=0.131 Sum_probs=82.6
Q ss_pred EeeccEEEEeEEEEeCCcc----eE-EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCC
Q 012788 183 ISSENVVVSNLTFLNAPAY----NI-HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSG 257 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg 257 (456)
...+++..+|++|+|...- .+ .....+...+.+|+|.... |-+... ..+-.+++|+|...=|-| -|
T Consensus 334 v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI---FG 404 (670)
T PLN02217 334 IVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQ-----DTLYAH-SHRQFYRDCTISGTIDFL---FG 404 (670)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeecc-----chhccC-CCcEEEEeCEEEEeccEE---ec
Confidence 3577899999999997531 12 2346788999999998743 434333 345689999999754433 12
Q ss_pred CCccccccCCCcccEEEEEEEEecCCC-----CeeEeccc-ccCcEEeEEEEeEEEECCcceEE----EEecCCCC-ceE
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSSSG-----SSVAFGSE-MSGGISNVQVEKIHLYDSLNGIE----FRTTKGRG-GYI 326 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~~~-----~gi~igs~-~~~~v~nI~v~n~~~~~~~~gi~----iks~~g~~-g~v 326 (456)
.-...++||++..... .-|.-.+. ....-..+.|.||++.+...-+. .+++=||. ...
T Consensus 405 -----------~a~avfq~C~I~~r~~~~~~~~~ITAqgr~~~~~~tGfvf~~C~i~~~~~~~~~~~~~~~yLGRPW~~y 473 (670)
T PLN02217 405 -----------DAAAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGEPDYLAVKETSKAYLGRPWKEY 473 (670)
T ss_pred -----------CceEEEEccEEEEccCCCCCceeEecCCCCCCCCCceEEEEeeEEecCccccccccccceeeccCCCCC
Confidence 4568889998874210 11222211 11234579999999988642111 11222222 335
Q ss_pred EeEEEEceEecCc
Q 012788 327 RQIVISDAELYNI 339 (456)
Q Consensus 327 ~nI~~~ni~~~~~ 339 (456)
..+.|-+..|.+.
T Consensus 474 srvVf~~t~l~~~ 486 (670)
T PLN02217 474 SRTIIMNTFIPDF 486 (670)
T ss_pred ceEEEEecccCCe
Confidence 6788888877764
No 66
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=96.91 E-value=0.11 Score=55.04 Aligned_cols=137 Identities=12% Similarity=0.120 Sum_probs=76.3
Q ss_pred EeeccEEEEeEEEEeCCcc----eE-EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCC
Q 012788 183 ISSENVVVSNLTFLNAPAY----NI-HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSG 257 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg 257 (456)
...+++..+|++|+|+... .+ .....+...+.+|+|...- |-+... ...-..+||+|+..=|-| -|
T Consensus 309 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI---FG 379 (539)
T PLN02995 309 IEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQ-----DTLMVH-SQRQFYRECYIYGTVDFI---FG 379 (539)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEeccc-----chhccC-CCceEEEeeEEeeccceE---ec
Confidence 3577889999999997532 11 2245778888888888743 333332 234578888888644433 12
Q ss_pred CCccccccCCCcccEEEEEEEEecCCC-----CeeEeccc-ccCcEEeEEEEeEEEECCcceE----EEEecCCCC-ceE
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSSSG-----SSVAFGSE-MSGGISNVQVEKIHLYDSLNGI----EFRTTKGRG-GYI 326 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~~~-----~gi~igs~-~~~~v~nI~v~n~~~~~~~~gi----~iks~~g~~-g~v 326 (456)
.-...++||++..-.. .-|.-.+. ....-..+.|.||++.+..... ..++.=|+. +.-
T Consensus 380 -----------~a~avf~~C~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~y 448 (539)
T PLN02995 380 -----------NAAAVFQNCIILPRRPLKGQANVITAQGRADPFQNTGISIHNSRILPAPDLKPVVRTVKTYMGRPWMKF 448 (539)
T ss_pred -----------ccceEEeccEEEEecCCCCCcceEecCCCCCCCCCceEEEEeeEEecCCcccccccccceeccCCCCCC
Confidence 4567788888764200 11222211 1123457888888888753211 012222221 234
Q ss_pred EeEEEEceEecCc
Q 012788 327 RQIVISDAELYNI 339 (456)
Q Consensus 327 ~nI~~~ni~~~~~ 339 (456)
+.+.|-+..|.+.
T Consensus 449 srvv~~~t~~~~~ 461 (539)
T PLN02995 449 SRTVVLQTYLDNV 461 (539)
T ss_pred cceEEEeccccCc
Confidence 5677777777653
No 67
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=96.89 E-value=0.1 Score=52.53 Aligned_cols=54 Identities=15% Similarity=0.152 Sum_probs=35.3
Q ss_pred EEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCC-ceee-eeeEeccceEEEeccCcEEEec
Q 012788 41 VSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSG-KWLT-GSFNLTSHLTLFLEKGAVILGS 109 (456)
Q Consensus 41 ~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G-~Yl~-g~l~L~s~~tL~l~~ga~i~~~ 109 (456)
=.|+.|=..++. | +++||+. -++|.+-|| +|.+ +++.|++...+.. .||+++..
T Consensus 44 Eqvkt~~~~P~e--D----le~~I~~--------haKVaL~Pg~~Y~i~~~V~I~~~cYIiG-nGA~V~v~ 99 (386)
T PF01696_consen 44 EQVKTYWMEPGE--D----LEEAIRQ--------HAKVALRPGAVYVIRKPVNIRSCCYIIG-NGATVRVN 99 (386)
T ss_pred EeEEEEEcCCCc--C----HHHHHHh--------cCEEEeCCCCEEEEeeeEEecceEEEEC-CCEEEEEe
Confidence 346667666654 4 4445542 234555555 6987 4999999998876 48888764
No 68
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=96.77 E-value=0.12 Score=54.80 Aligned_cols=136 Identities=13% Similarity=0.135 Sum_probs=74.2
Q ss_pred EeeccEEEEeEEEEeCCcc----e-EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCC
Q 012788 183 ISSENVVVSNLTFLNAPAY----N-IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSG 257 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~----~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg 257 (456)
...+++..+|++|+|+... . -.....+.+.+.+|+|.... |-+... +..-..+||+|+..=|-| -|
T Consensus 314 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI---FG 384 (541)
T PLN02416 314 VSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQ-----DTLYVH-SFRQFYRECDIYGTIDYI---FG 384 (541)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEeccc-----chhccC-CCceEEEeeEEeecccee---ec
Confidence 3578899999999997432 1 11235677888888888743 333332 345578888888644433 12
Q ss_pred CCccccccCCCcccEEEEEEEEecCCC-C---e-eEeccc-ccCcEEeEEEEeEEEECCcceE----EEEecCCCC-ceE
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSSSG-S---S-VAFGSE-MSGGISNVQVEKIHLYDSLNGI----EFRTTKGRG-GYI 326 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~~~-~---g-i~igs~-~~~~v~nI~v~n~~~~~~~~gi----~iks~~g~~-g~v 326 (456)
.-...++||++..-.. . + |.-.+. ....-..+.|.||++.+...-. ..++.=|+. ..-
T Consensus 385 -----------~a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~~ 453 (541)
T PLN02416 385 -----------NAAVVFQACNIVSKMPMPGQFTVITAQSRDTPDEDTGISIQNCSILATEDLYSNSNSVKSYLGRPWRVY 453 (541)
T ss_pred -----------cceEEEeccEEEEecCCCCCceEEECCCCCCCCCCCEEEEEeeEEecCCccccccccccccccCCCCCC
Confidence 4567788888764200 0 1 111111 1123456788888887643210 112222222 234
Q ss_pred EeEEEEceEecC
Q 012788 327 RQIVISDAELYN 338 (456)
Q Consensus 327 ~nI~~~ni~~~~ 338 (456)
..+.|-+..|.+
T Consensus 454 sr~v~~~s~i~~ 465 (541)
T PLN02416 454 SRTVVLESYIDD 465 (541)
T ss_pred ccEEEEecccCC
Confidence 566666666665
No 69
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=96.77 E-value=0.22 Score=53.54 Aligned_cols=136 Identities=10% Similarity=0.114 Sum_probs=80.0
Q ss_pred EeeccEEEEeEEEEeCCcc----e-EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCC
Q 012788 183 ISSENVVVSNLTFLNAPAY----N-IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSG 257 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~----~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg 257 (456)
...+++..+|++|+|+..- . -.....+...+.+|+|...- |-+... ...-.++||+|...=|-| -|
T Consensus 369 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI---FG 439 (596)
T PLN02745 369 ALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQ-----DTLYAQ-THRQFYRSCVITGTIDFI---FG 439 (596)
T ss_pred EEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecc-----cccccC-CCcEEEEeeEEEeeccEE---ec
Confidence 3678899999999996431 1 12246788999999998743 333332 345688999998754433 12
Q ss_pred CCccccccCCCcccEEEEEEEEecCC-----CCeeEeccc-ccCcEEeEEEEeEEEECCcceEE----EEecCCCC-ceE
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSSS-----GSSVAFGSE-MSGGISNVQVEKIHLYDSLNGIE----FRTTKGRG-GYI 326 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~~-----~~gi~igs~-~~~~v~nI~v~n~~~~~~~~gi~----iks~~g~~-g~v 326 (456)
.-...++||++.... ..-|.-.+. ....-..+.|.||++.+...... .++.=|+. ..-
T Consensus 440 -----------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRPW~~y 508 (596)
T PLN02745 440 -----------DAAAIFQNCLIFVRKPLPNQQNTVTAQGRVDKFETTGIVLQNCRIAPDEDLKPVKTEVKSYLGRPWKEF 508 (596)
T ss_pred -----------ceeEEEEecEEEEecCCCCCCceEEecCCCCCCCCceEEEEeeEEecCccccccccccceeccCCCCCC
Confidence 467788888886420 112222221 11234678899999987542111 12222222 234
Q ss_pred EeEEEEceEecC
Q 012788 327 RQIVISDAELYN 338 (456)
Q Consensus 327 ~nI~~~ni~~~~ 338 (456)
+.+.|-+..|.+
T Consensus 509 srvv~~~s~l~~ 520 (596)
T PLN02745 509 SRTIVMESTIED 520 (596)
T ss_pred ccEEEEecccCC
Confidence 667777777665
No 70
>PLN02314 pectinesterase
Probab=96.77 E-value=0.16 Score=54.67 Aligned_cols=136 Identities=14% Similarity=0.132 Sum_probs=78.5
Q ss_pred EeeccEEEEeEEEEeCCcc----e-EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCC
Q 012788 183 ISSENVVVSNLTFLNAPAY----N-IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSG 257 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~----~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg 257 (456)
...+++..+|++|+|...- . -.....+...+.+|++.... |-+... +..-..+||+|...=|-| -|
T Consensus 362 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~Q-----DTLy~~-~~rq~y~~C~I~GtvDFI---FG 432 (586)
T PLN02314 362 AAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQ-----DTLYAH-SNRQFYRDCDITGTIDFI---FG 432 (586)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEecc-----chheeC-CCCEEEEeeEEEecccee---cc
Confidence 4577899999999997421 1 22346778888999988743 334333 344678889988744433 12
Q ss_pred CCccccccCCCcccEEEEEEEEecCC-----CCeeEecccc-cCcEEeEEEEeEEEECCcceEEEEecCCCC-ceEEeEE
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSSS-----GSSVAFGSEM-SGGISNVQVEKIHLYDSLNGIEFRTTKGRG-GYIRQIV 330 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~~-----~~gi~igs~~-~~~v~nI~v~n~~~~~~~~gi~iks~~g~~-g~v~nI~ 330 (456)
.-...++||.+.... ...|.-.+.. ...-..+.|.||++.+... +..++.-|+. ..-+.++
T Consensus 433 -----------~a~avf~~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~-~~~~~yLGRpW~~ysr~v 500 (586)
T PLN02314 433 -----------NAAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQRCTISAFGN-LTAPTYLGRPWKDFSTTV 500 (586)
T ss_pred -----------CceeeeeccEEEEecCCCCCCceEecCCCCCCCCCCEEEEEeeEEecCCc-ccccccccCCCCCCceEE
Confidence 466778888886420 1122222211 1334578889998887542 1222222222 2345566
Q ss_pred EEceEecCc
Q 012788 331 ISDAELYNI 339 (456)
Q Consensus 331 ~~ni~~~~~ 339 (456)
|-+..|.+.
T Consensus 501 ~~~s~i~~~ 509 (586)
T PLN02314 501 IMQSYIGSF 509 (586)
T ss_pred EEecccCCc
Confidence 777666653
No 71
>PLN02197 pectinesterase
Probab=96.72 E-value=0.24 Score=53.04 Aligned_cols=137 Identities=13% Similarity=0.109 Sum_probs=77.1
Q ss_pred EEeeccEEEEeEEEEeCCcc----eE-EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCC
Q 012788 182 FISSENVVVSNLTFLNAPAY----NI-HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKS 256 (456)
Q Consensus 182 ~~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s 256 (456)
....+++..+|++|+|+... .+ .....+...+.+|+|... -|-+... ...-.++||+|+..=|-| -
T Consensus 360 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~Gy-----QDTLy~~-~~Rqyy~~C~I~GtVDFI---F 430 (588)
T PLN02197 360 QVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGY-----QDTLYVN-NGRQFYRNIVVSGTVDFI---F 430 (588)
T ss_pred EEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEec-----CcceEec-CCCEEEEeeEEEeccccc---c
Confidence 34578899999999997431 12 224578888888888874 3444443 345578888888643322 2
Q ss_pred CCCccccccCCCcccEEEEEEEEecCC-CCe----eEecccc--cCcEEeEEEEeEEEECCcce----EEEEecCCCC-c
Q 012788 257 GWDEYGIAYGRPTTDVHIRRVLLQSSS-GSS----VAFGSEM--SGGISNVQVEKIHLYDSLNG----IEFRTTKGRG-G 324 (456)
Q Consensus 257 g~~~~g~~~~~~s~ni~I~n~~~~~~~-~~g----i~igs~~--~~~v~nI~v~n~~~~~~~~g----i~iks~~g~~-g 324 (456)
| .....++||++.... ..| |.-.+.. ...-..+.|.||++.+...- ...++.=|+. .
T Consensus 431 G-----------~a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~it~~~~~~~~~~~~~~yLGRPW~ 499 (588)
T PLN02197 431 G-----------KSATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRIVPDKKLTAERLTVASYLGRPWK 499 (588)
T ss_pred c-----------ceeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEEecCCcccccccccccccCCCCC
Confidence 2 344778888876320 111 1111111 12235688888888875321 1122222322 3
Q ss_pred eEEeEEEEceEecC
Q 012788 325 YIRQIVISDAELYN 338 (456)
Q Consensus 325 ~v~nI~~~ni~~~~ 338 (456)
..+.+.|-+..|.+
T Consensus 500 ~ysrvV~~~s~~~~ 513 (588)
T PLN02197 500 KFSTTVIISTEIGD 513 (588)
T ss_pred CCceEEEEecccCC
Confidence 34667777777765
No 72
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=96.59 E-value=0.21 Score=53.06 Aligned_cols=110 Identities=14% Similarity=0.121 Sum_probs=63.2
Q ss_pred EEEeeccEEEEeEEEEeCCcc----eE-EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecC
Q 012788 181 EFISSENVVVSNLTFLNAPAY----NI-HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLK 255 (456)
Q Consensus 181 ~~~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~ 255 (456)
.....+++..+|++|+|.... .+ .-...+...+.+|+|...- |-+...+ ..-..+||+|...=|-|
T Consensus 318 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~Q-----DTLy~~~-~Rqyy~~C~I~GtVDFI--- 388 (548)
T PLN02301 318 VAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQ-----DTLYAHS-LRQFYRDSYITGTVDFI--- 388 (548)
T ss_pred EEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeecc-----ccceecC-CcEEEEeeEEEecccee---
Confidence 334567899999999997432 11 2235677888888888743 3333332 34578888888643433
Q ss_pred CCCCccccccCCCcccEEEEEEEEecCCC-----CeeEeccc-ccCcEEeEEEEeEEEECC
Q 012788 256 SGWDEYGIAYGRPTTDVHIRRVLLQSSSG-----SSVAFGSE-MSGGISNVQVEKIHLYDS 310 (456)
Q Consensus 256 sg~~~~g~~~~~~s~ni~I~n~~~~~~~~-----~gi~igs~-~~~~v~nI~v~n~~~~~~ 310 (456)
-| .-...++||++..-.. .-|.-.+. ....-..+.|.||++.+.
T Consensus 389 FG-----------~a~avfq~c~i~~~~~~~~~~~~iTAqgr~~~~~~tG~vf~~c~i~~~ 438 (548)
T PLN02301 389 FG-----------NAAVVFQNCKIVARKPMAGQKNMVTAQGRTDPNQNTGISIQKCDIIAS 438 (548)
T ss_pred cc-----------cceeEEeccEEEEecCCCCCCceEEecCCCCCCCCCEEEEEeeEEecC
Confidence 12 4567777887764200 11222211 112345677888888764
No 73
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=96.54 E-value=0.38 Score=50.31 Aligned_cols=136 Identities=13% Similarity=0.141 Sum_probs=73.2
Q ss_pred EeeccEEEEeEEEEeCCcc----eE-EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCC
Q 012788 183 ISSENVVVSNLTFLNAPAY----NI-HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSG 257 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg 257 (456)
...+++..+|++|+|...- .+ .....+...+.+|+|... -|-+... +..-..++|+|...=|-|- |
T Consensus 281 v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~Gy-----QDTLy~~-~~RqyyrdC~I~GtVDFIF---G 351 (509)
T PLN02488 281 SNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGY-----QDALYPH-RDRQFYRECFITGTVDFIC---G 351 (509)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecc-----CcceeeC-CCCEEEEeeEEeeccceEe---c
Confidence 3466788889999987431 11 123567788888888763 3334332 3456788888886444331 2
Q ss_pred CCccccccCCCcccEEEEEEEEecCCC-----CeeEecccc-cCcEEeEEEEeEEEECCcceE----EEEecCCCC-ceE
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSSSG-----SSVAFGSEM-SGGISNVQVEKIHLYDSLNGI----EFRTTKGRG-GYI 326 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~~~-----~gi~igs~~-~~~v~nI~v~n~~~~~~~~gi----~iks~~g~~-g~v 326 (456)
.-...++||++..-.. .-|.-.+.. ...-..+.|.||++....... ..++.=|+. ...
T Consensus 352 -----------~a~avFq~C~I~sr~~~~~~~~~ITAq~R~~~~~~tGfvf~~C~it~~~~~~~~~~~~~~YLGRPW~~y 420 (509)
T PLN02488 352 -----------NAAAVFQFCQIVARQPMMGQSNVITAQSRESKDDNSGFSIQKCNITASSDLDPVKATVKTYLGRPWRKY 420 (509)
T ss_pred -----------ceEEEEEccEEEEecCCCCCCEEEEeCCCCCCCCCcEEEEEeeEEecCCcccccccccceeecCCCCCC
Confidence 4667788887764200 112222211 122346788888887654211 112222221 234
Q ss_pred EeEEEEceEecC
Q 012788 327 RQIVISDAELYN 338 (456)
Q Consensus 327 ~nI~~~ni~~~~ 338 (456)
+.+.|-+..|.+
T Consensus 421 SrvVf~~s~i~~ 432 (509)
T PLN02488 421 STVAVLQSFIGD 432 (509)
T ss_pred ccEEEEeccCCC
Confidence 556666666655
No 74
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=96.53 E-value=0.26 Score=52.77 Aligned_cols=137 Identities=13% Similarity=0.159 Sum_probs=77.6
Q ss_pred EeeccEEEEeEEEEeCCcc----eE-EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCC
Q 012788 183 ISSENVVVSNLTFLNAPAY----NI-HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSG 257 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg 257 (456)
...+++..+|++|+|.... .+ .....+...+.+|+|.... |-+... +..-..++|+|...=|-|- |
T Consensus 344 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFIF---G 414 (572)
T PLN02990 344 INGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQ-----DTLYVH-SHRQFFRDCTVSGTVDFIF---G 414 (572)
T ss_pred EEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccc-----chhccC-CCcEEEEeeEEecccceEc---c
Confidence 3567899999999997532 11 2245778888999988743 333332 3456788899887544331 2
Q ss_pred CCccccccCCCcccEEEEEEEEecCC-CC---e-eEeccc-ccCcEEeEEEEeEEEECCcceEE----EEecCCCC-ceE
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSSS-GS---S-VAFGSE-MSGGISNVQVEKIHLYDSLNGIE----FRTTKGRG-GYI 326 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~~-~~---g-i~igs~-~~~~v~nI~v~n~~~~~~~~gi~----iks~~g~~-g~v 326 (456)
.-...++||++..-. .. + |.-.+. ....-..+.|.||++.+...... .+++=|+. ..-
T Consensus 415 -----------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~C~it~~~~~~~~~~~~~~yLGRpW~~y 483 (572)
T PLN02990 415 -----------DAKVVLQNCNIVVRKPMKGQSCMITAQGRSDVRESTGLVLQNCHITGEPAYIPVKSINKAYLGRPWKEF 483 (572)
T ss_pred -----------CceEEEEccEEEEecCCCCCceEEEeCCCCCCCCCceEEEEeeEEecCccccccccccceEeecCCCCC
Confidence 356778888886420 11 1 221111 11234568889998887542111 11111221 234
Q ss_pred EeEEEEceEecCc
Q 012788 327 RQIVISDAELYNI 339 (456)
Q Consensus 327 ~nI~~~ni~~~~~ 339 (456)
+.+.|.+..|.+.
T Consensus 484 srvV~~~s~i~~~ 496 (572)
T PLN02990 484 SRTIIMGTTIDDV 496 (572)
T ss_pred ceEEEEecccCCe
Confidence 5677777777653
No 75
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=96.30 E-value=0.31 Score=52.35 Aligned_cols=108 Identities=12% Similarity=0.119 Sum_probs=57.0
Q ss_pred EeeccEEEEeEEEEeCCcc----eE-EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCC
Q 012788 183 ISSENVVVSNLTFLNAPAY----NI-HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSG 257 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg 257 (456)
...+++..+|++|+|.... .+ .....+...+.+|+|.... |-+... +..-..++|+|...=|-|- |
T Consensus 359 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~Q-----DTLy~~-~~rq~y~~c~I~GtvDFIF---G 429 (587)
T PLN02313 359 AVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQ-----DTLYVH-SNRQFFVKCHITGTVDFIF---G 429 (587)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEeccc-----chhccC-CCcEEEEeeEEeeccceec---c
Confidence 4567889999999997532 11 1234666777777777632 333332 2344677777775433331 1
Q ss_pred CCccccccCCCcccEEEEEEEEecCC-C----CeeEeccc-ccCcEEeEEEEeEEEECC
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSSS-G----SSVAFGSE-MSGGISNVQVEKIHLYDS 310 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~~-~----~gi~igs~-~~~~v~nI~v~n~~~~~~ 310 (456)
.-...++||.+.... . .-|.-.+. ....-..+.|.||++.+.
T Consensus 430 -----------~a~avfq~c~i~~r~~~~~~~~~iTAqgr~~~~~~tG~v~~~c~i~~~ 477 (587)
T PLN02313 430 -----------NAAAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGT 477 (587)
T ss_pred -----------ceeEEEEccEEEEecCCCCCcceEEecCCCCCCCCceEEEEecEEecC
Confidence 355667777665310 0 11222111 112234567777777654
No 76
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=94.63 E-value=0.4 Score=45.69 Aligned_cols=103 Identities=13% Similarity=0.146 Sum_probs=66.3
Q ss_pred cccEEEEEEEEecCCCCeeEecccc-cCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcceeEEEec
Q 012788 269 TTDVHIRRVLLQSSSGSSVAFGSEM-SGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFGACG 347 (456)
Q Consensus 269 s~ni~I~n~~~~~~~~~gi~igs~~-~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~~i~i~~ 347 (456)
+.+.+|+||+|.+....||.+.... ...+.++.|++..+.....|+.+.... .+ +. ..++|..+++...+|.+..
T Consensus 121 ss~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~i~~~~--~~-~~-n~I~NN~I~~N~~Gi~~~~ 196 (246)
T PF07602_consen 121 SSSPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTGISISDNA--AP-VE-NKIENNIIENNNIGIVAIG 196 (246)
T ss_pred cCCcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcCeEEEccc--CC-cc-ceeeccEEEeCCcCeEeec
Confidence 3489999999998657898875443 567889999999999888899997653 23 22 2446666666555777543
Q ss_pred cCCCCCC-CCCCCCCCCeEEEEEEEEEEee
Q 012788 348 NCGSHPD-DDFDPDALPAIDQITFKDIIGT 376 (456)
Q Consensus 348 ~y~~~~~-~~~~~~~~~~i~nIt~~nI~~~ 376 (456)
.-.+-.. ..-.+.. -.|++-..-||.-.
T Consensus 197 ~~pDlG~~s~~~~g~-N~~~~N~~~Dl~~~ 225 (246)
T PF07602_consen 197 DAPDLGTGSEGSPGN-NIFRNNGRYDLNNS 225 (246)
T ss_pred cCCccccCCCCCCCC-cEEecCcceeeEec
Confidence 3211010 0011222 26777777777774
No 77
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=94.38 E-value=1.5 Score=42.93 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=27.9
Q ss_pred chHHHHHHHHHHhhccccCCCcEEEecCCceeeeeeEec-c--ceEEEec
Q 012788 55 LNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLT-S--HLTLFLE 101 (456)
Q Consensus 55 ddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l~L~-s--~~tL~l~ 101 (456)
++-.-||+|+|+|..-.....-.+.|-+|.|. +.+.++ + +++|+.+
T Consensus 92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~GvY~-e~v~Vp~~~~~ITLyGe 140 (405)
T COG4677 92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAGVYQ-ETVYVPAAPGGITLYGE 140 (405)
T ss_pred cchHHHHHHHhhhcccCCCceEEEEEccceec-eeEEecCCCCceeEEec
Confidence 56678999999984211111235667799994 444443 3 3777765
No 78
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=92.80 E-value=0.14 Score=34.86 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=14.1
Q ss_pred eeeecCccCEEEEecEEecCCceEecCC
Q 012788 229 GIVPDSSDNVCIEDCIIAMGHDAISLKS 256 (456)
Q Consensus 229 Gi~~~~s~nV~I~n~~i~~gDD~iai~s 256 (456)
||.++.+.+.+|+++.+....|||.+..
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~ 28 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD 28 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe
Confidence 3444445555555555555444555544
No 79
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=92.56 E-value=2.2 Score=39.74 Aligned_cols=129 Identities=20% Similarity=0.221 Sum_probs=67.6
Q ss_pred ceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEec-CCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeE
Q 012788 210 NVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAM-GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVA 288 (456)
Q Consensus 210 nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~ 288 (456)
..+++|+.|-.+ ..||||... +-+|+|++++. +.|++.++.. ...++|.+.-..+..+--|.
T Consensus 62 GatlkNvIiG~~----~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~-----------~~~~~I~ggga~~A~DKV~Q 124 (215)
T PF03211_consen 62 GATLKNVIIGAN----QADGIHCKG--SCTLENVWWEDVCEDAATFKGD-----------GGTVTIIGGGARNASDKVFQ 124 (215)
T ss_dssp TEEEEEEEETSS-----TT-EEEES--CEEEEEEEESS-SSESEEEESS-----------EEEEEEESTEEEEEEEEEEE
T ss_pred CCEEEEEEEcCC----CcCceEEcC--CEEEEEEEecccceeeeEEcCC-----------CceEEEeCCcccCCCccEEE
Confidence 456667666432 468999875 78899999887 8999999874 22444444333321011111
Q ss_pred ecccccCcEEeEEEEeEEEECCcceEEEEecCC---CCceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeE
Q 012788 289 FGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKG---RGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAI 365 (456)
Q Consensus 289 igs~~~~~v~nI~v~n~~~~~~~~gi~iks~~g---~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i 365 (456)
.. +--.+.|+|-+..+ .|-.+.+-.+ .++.=+++.+++........-+.|..+|++ . ..|
T Consensus 125 ~N-----g~Gtv~I~nF~a~d--~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD---------~-ati 187 (215)
T PF03211_consen 125 HN-----GGGTVTIKNFYAED--FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGD---------T-ATI 187 (215)
T ss_dssp E------SSEEEEEEEEEEEE--EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTT---------T-EEE
T ss_pred ec-----CceeEEEEeEEEcC--CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCC---------e-EEE
Confidence 11 11245666644432 3444444311 123446677776665544444556667765 1 356
Q ss_pred EEEEEEE
Q 012788 366 DQITFKD 372 (456)
Q Consensus 366 ~nIt~~n 372 (456)
++++++.
T Consensus 188 ~~~~~~~ 194 (215)
T PF03211_consen 188 SNSCIKG 194 (215)
T ss_dssp EEEEEEE
T ss_pred EEEEecC
Confidence 6666665
No 80
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=91.39 E-value=0.37 Score=32.66 Aligned_cols=40 Identities=20% Similarity=0.153 Sum_probs=30.2
Q ss_pred EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEec
Q 012788 203 IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAM 247 (456)
Q Consensus 203 i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~ 247 (456)
|.+..+.+.+|++.++.. +.|||++..+++-+|+++.+..
T Consensus 2 I~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 2 IYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred EEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEEc
Confidence 566677777788888876 4678888888888888887764
No 81
>PLN02480 Probable pectinesterase
Probab=90.71 E-value=13 Score=37.41 Aligned_cols=113 Identities=12% Similarity=0.173 Sum_probs=70.7
Q ss_pred EeecccceEEEEEEEECCCC-----CCCCceeee-cCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEE
Q 012788 204 HPVYCSNVHIQNISVHAPPE-----SPYTVGIVP-DSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRV 277 (456)
Q Consensus 204 ~~~~~~nv~i~n~~i~~~~~-----~~n~DGi~~-~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~ 277 (456)
.....++++++|++|.+... .....++.+ ..++++.+.||.|....|-+.... ..-.++||
T Consensus 127 vtV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~-------------gR~yf~~C 193 (343)
T PLN02480 127 FTVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK-------------GRHYYHSC 193 (343)
T ss_pred EEEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC-------------CCEEEEeC
Confidence 34456889999999999632 112345555 357889999999999888776443 34568899
Q ss_pred EEecCCCCeeEecccccCcEEeEEEEeEEEECCcc------eEEEEecCCCCceEEeEEEEceEecC
Q 012788 278 LLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLN------GIEFRTTKGRGGYIRQIVISDAELYN 338 (456)
Q Consensus 278 ~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~------gi~iks~~g~~g~v~nI~~~ni~~~~ 338 (456)
++.+. --+=+|. -...|+||++..... | .|.........-....|.|+++..
T Consensus 194 ~IeG~--VDFIFG~------g~a~fe~C~i~s~~~~~~~~~G-~ITA~~r~~~~~~GfvF~~C~i~g 251 (343)
T PLN02480 194 YIQGS--IDFIFGR------GRSIFHNCEIFVIADRRVKIYG-SITAHNRESEDNSGFVFIKGKVYG 251 (343)
T ss_pred EEEee--eeEEccc------eeEEEEccEEEEecCCCCCCce-EEEcCCCCCCCCCEEEEECCEEcc
Confidence 99864 2222231 357899999975421 2 132221111222347788888875
No 82
>PLN02773 pectinesterase
Probab=90.41 E-value=7.1 Score=38.75 Aligned_cols=113 Identities=15% Similarity=0.155 Sum_probs=73.6
Q ss_pred EeecccceEEEEEEEECCCCCCCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecC
Q 012788 204 HPVYCSNVHIQNISVHAPPESPYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSS 282 (456)
Q Consensus 204 ~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~ 282 (456)
.....+++..+|++|.+.........+.+. .+..+.+.||.|....|-+..+. ..-.++||++.+.
T Consensus 97 v~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~-------------gr~yf~~c~IeG~ 163 (317)
T PLN02773 97 VIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHY-------------GKQYLRDCYIEGS 163 (317)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCC-------------CCEEEEeeEEeec
Confidence 334578899999999986432222334332 46889999999999888887654 3467899999874
Q ss_pred CCCeeEecccccCcEEeEEEEeEEEECCcceEEEEecCCCC--ceEEeEEEEceEecCc
Q 012788 283 SGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRG--GYIRQIVISDAELYNI 339 (456)
Q Consensus 283 ~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~--g~v~nI~~~ni~~~~~ 339 (456)
--+-.|. -...|++|++.....| .|. .+++. ..-.-..|.|+++...
T Consensus 164 --VDFIFG~------g~a~Fe~c~i~s~~~g-~IT-A~~r~~~~~~~GfvF~~c~it~~ 212 (317)
T PLN02773 164 --VDFIFGN------STALLEHCHIHCKSAG-FIT-AQSRKSSQESTGYVFLRCVITGN 212 (317)
T ss_pred --ccEEeec------cEEEEEeeEEEEccCc-EEE-CCCCCCCCCCceEEEEccEEecC
Confidence 2233342 3479999999865544 232 22110 1112478899998764
No 83
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=90.06 E-value=20 Score=36.54 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=11.1
Q ss_pred cccEEEEEEEEecCCCCeeEeccc
Q 012788 269 TTDVHIRRVLLQSSSGSSVAFGSE 292 (456)
Q Consensus 269 s~ni~I~n~~~~~~~~~gi~igs~ 292 (456)
+.|..++|.....+..+|+-+++.
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aD 286 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGAD 286 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS
T ss_pred eeeEEEeccceEEEeecceeccCC
Confidence 445555555554444555555543
No 84
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=88.81 E-value=1.5 Score=42.11 Aligned_cols=64 Identities=14% Similarity=0.284 Sum_probs=32.1
Q ss_pred cccEEEEEEEEecCCCCeeEeccccc-----CcEEeEEEEeEEEECC-----cceEEEEecCCCCceEEeEEEEceEecC
Q 012788 269 TTDVHIRRVLLQSSSGSSVAFGSEMS-----GGISNVQVEKIHLYDS-----LNGIEFRTTKGRGGYIRQIVISDAELYN 338 (456)
Q Consensus 269 s~ni~I~n~~~~~~~~~gi~igs~~~-----~~v~nI~v~n~~~~~~-----~~gi~iks~~g~~g~v~nI~~~ni~~~~ 338 (456)
|.|..|.|....+ ..|+-||...- .-.+|....|+.+.++ .+||.|.+- ...+=|-+.|+.|..
T Consensus 300 cdnfvidni~mvn--sagmligygvikg~ylsipqnfkln~i~ldn~~l~yklrgiqissg----natsfvaitn~~mkr 373 (464)
T PRK10123 300 CDNFVIDNIEMIN--SAGMLIGYGVIKGKYLSIPQNFKLNNIQLDNTHLAYKLRGIQISAG----NAVSFVALTNIEMKR 373 (464)
T ss_pred ccceEEecccccc--ccccEEEeeeeeccEecccccceeceEeecccccceeeeeeEeccC----CcceEEEEeeeehhh
Confidence 6777777777665 46666654310 1134444444444443 356655442 223444455555543
No 85
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=88.13 E-value=3.7 Score=42.17 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=21.2
Q ss_pred cEEeEEEEeEEEECCcceEEEEecC------------CCCceEEeEEEEceEecCc
Q 012788 296 GISNVQVEKIHLYDSLNGIEFRTTK------------GRGGYIRQIVISDAELYNI 339 (456)
Q Consensus 296 ~v~nI~v~n~~~~~~~~gi~iks~~------------g~~g~v~nI~~~ni~~~~~ 339 (456)
.+.|++|.++++.++..+|.+..-. -+...-.++++.|..+.+.
T Consensus 308 qv~nv~I~~NT~In~~~~i~~g~g~~~~~~~~~~~~~i~s~~p~~~~~~nN~i~~~ 363 (425)
T PF14592_consen 308 QVKNVLIANNTFINCKSPIHFGAGSDEERKDVLPASNIRSARPINSTFANNIIYND 363 (425)
T ss_dssp --BSEEEES-EEES-SEEEESST-THHHHHHHHHHCT---B---SEEEES-EEE--
T ss_pred ccceeEEecceEEccCCceEEccccccccccccccccccccCCceEEeeCCeEEcC
Confidence 4788888888888887677665411 0123345777777666654
No 86
>PLN02682 pectinesterase family protein
Probab=87.87 E-value=32 Score=34.86 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=70.4
Q ss_pred eecccceEEEEEEEECCCCC-----CCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEE
Q 012788 205 PVYCSNVHIQNISVHAPPES-----PYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVL 278 (456)
Q Consensus 205 ~~~~~nv~i~n~~i~~~~~~-----~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~ 278 (456)
....+++..+|++|.+.... .....+.+. .++++.+.||.|....|-+..+. ..-.++||+
T Consensus 159 ~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~~-------------gRqyf~~C~ 225 (369)
T PLN02682 159 AVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLYDHL-------------GRHYFKDCY 225 (369)
T ss_pred EEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceEECC-------------CCEEEEeeE
Confidence 34567899999999986421 112233332 47889999999999888776554 346789999
Q ss_pred EecCCCCeeEecccccCcEEeEEEEeEEEECCcce-EEEEecCCC--CceEEeEEEEceEecCc
Q 012788 279 LQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNG-IEFRTTKGR--GGYIRQIVISDAELYNI 339 (456)
Q Consensus 279 ~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~g-i~iks~~g~--~g~v~nI~~~ni~~~~~ 339 (456)
+.+. --+-.|. -...|++|++...... -.|. .+++ ...-....|.|+++...
T Consensus 226 IeG~--VDFIFG~------g~a~Fe~C~I~s~~~~~G~IT-A~~r~~~~~~~GfvF~~C~itg~ 280 (369)
T PLN02682 226 IEGS--VDFIFGN------GLSLYEGCHLHAIARNFGALT-AQKRQSVLEDTGFSFVNCKVTGS 280 (369)
T ss_pred Eccc--ccEEecC------ceEEEEccEEEEecCCCeEEe-cCCCCCCCCCceEEEEeeEecCC
Confidence 9874 2222332 3578999999753221 1222 2221 11124577888888763
No 87
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=86.94 E-value=12 Score=39.73 Aligned_cols=137 Identities=11% Similarity=0.122 Sum_probs=75.7
Q ss_pred EeeccEEEEeEEEEeCCcc----e-EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCC
Q 012788 183 ISSENVVVSNLTFLNAPAY----N-IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSG 257 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~----~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg 257 (456)
...+++..+|++|+|+... . -.....+...+.+|+|... -|-+.... ..-.+++|+|...=|=|- |
T Consensus 267 v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~-----QDTLy~~~-~rqyy~~C~I~G~vDFIF---G 337 (497)
T PLN02698 267 ITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGY-----QDTLYAAA-LRQFYRECDIYGTIDFIF---G 337 (497)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecc-----cchheeCC-CcEEEEeeEEEeccceEe---c
Confidence 3578899999999997542 1 1223577888888888863 33343332 345788888886444331 2
Q ss_pred CCccccccCCCcccEEEEEEEEecCCC-----CeeEecc-cccCcEEeEEEEeEEEECCcceEE----EEecCCCC-ceE
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSSSG-----SSVAFGS-EMSGGISNVQVEKIHLYDSLNGIE----FRTTKGRG-GYI 326 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~~~-----~gi~igs-~~~~~v~nI~v~n~~~~~~~~gi~----iks~~g~~-g~v 326 (456)
.-...++||++..... ..|.-.+ .....-..+.|.||++.+...... .++.=|+. ..-
T Consensus 338 -----------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~y 406 (497)
T PLN02698 338 -----------NAAAVFQNCYLFLRRPHGKSYNVILANGRSDPGQNTGFSLQSCRIRTSSDFSPVKHSYSSYLGRPWKKY 406 (497)
T ss_pred -----------ccceeecccEEEEecCCCCCceEEEecCCCCCCCCceEEEEeeEEecCCcccccccccceeccCCCCCC
Confidence 3556788888763201 1222211 111234568888888876542111 11222222 234
Q ss_pred EeEEEEceEecCc
Q 012788 327 RQIVISDAELYNI 339 (456)
Q Consensus 327 ~nI~~~ni~~~~~ 339 (456)
+.+.|.+..|.+.
T Consensus 407 sr~vf~~s~l~~~ 419 (497)
T PLN02698 407 SRAIVMESYIDDA 419 (497)
T ss_pred ceEEEEecccCCc
Confidence 5666766666653
No 88
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=85.32 E-value=46 Score=33.87 Aligned_cols=35 Identities=17% Similarity=0.110 Sum_probs=17.2
Q ss_pred ccEEEEeEEEEeCC-cceEEeecccceEEEEEEEEC
Q 012788 186 ENVVVSNLTFLNAP-AYNIHPVYCSNVHIQNISVHA 220 (456)
Q Consensus 186 ~nv~I~~v~i~ns~-~~~i~~~~~~nv~i~n~~i~~ 220 (456)
.+|++.|+.|...+ .-++.+....+++|.+|.+.+
T Consensus 121 ~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~g 156 (386)
T PF01696_consen 121 EGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFG 156 (386)
T ss_pred eeeEEEEEEEecCCccceeEEEecceEEEEeeEEec
Confidence 34555555555444 334444444555555555544
No 89
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=84.34 E-value=18 Score=32.77 Aligned_cols=123 Identities=19% Similarity=0.186 Sum_probs=66.8
Q ss_pred ccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEec-CC-------ceEecCCC
Q 012788 186 ENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAM-GH-------DAISLKSG 257 (456)
Q Consensus 186 ~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gD-------D~iai~sg 257 (456)
++|.|.+-+|.|...++|.+..... +..-...++|.|++..|.. |. .||.. +
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~------------------~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv~-s- 61 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDG------------------SYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIVT-S- 61 (198)
T ss_pred CceEEecceeecccCceEEEEecCC------------------CCCccccccEEEECcEeecCCcCCCCceeeeEEe-c-
Confidence 4677777777777777666543310 0111134566666666653 21 12222 2
Q ss_pred CCccccccCCCcccEEEEEEEEecCCCCeeEeccc-----ccCcEEeEEEEeEEEECCcceEEEEecCCCCce-------
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSE-----MSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGY------- 325 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~-----~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~------- 325 (456)
...|.+|+|+.|.+....||.-.-. ..+.-.-.+|+|+.|.++... +..+.+.|+
T Consensus 62 ----------GF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~NT~~r---~~~~~GtGYgv~N~L~ 128 (198)
T PF08480_consen 62 ----------GFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTRKR---KSSPAGTGYGVINYLP 128 (198)
T ss_pred ----------cccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEeeeeec---ccCCCCceeEEEecCC
Confidence 2678888888888765555553211 122344488888888876422 222211221
Q ss_pred -EEeEEEEceEecCcce
Q 012788 326 -IRQIVISDAELYNINV 341 (456)
Q Consensus 326 -v~nI~~~ni~~~~~~~ 341 (456)
=..+.++|..+.+...
T Consensus 129 ~tHsFvLenNclYnN~a 145 (198)
T PF08480_consen 129 ETHSFVLENNCLYNNAA 145 (198)
T ss_pred CcceEEEEccceeccCc
Confidence 2567778877776543
No 90
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=83.99 E-value=20 Score=32.45 Aligned_cols=47 Identities=19% Similarity=0.371 Sum_probs=31.1
Q ss_pred cccEEEEEEEEecCCCC--eeE-ecccccCcEEeEEEEeEEEECCcc-eEEE
Q 012788 269 TTDVHIRRVLLQSSSGS--SVA-FGSEMSGGISNVQVEKIHLYDSLN-GIEF 316 (456)
Q Consensus 269 s~ni~I~n~~~~~~~~~--gi~-igs~~~~~v~nI~v~n~~~~~~~~-gi~i 316 (456)
.+||.|.++.|... +. .+. +|.....++.|.+|||++|.+..+ |+.-
T Consensus 33 a~nVhIhhN~fY~t-Gtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~ 83 (198)
T PF08480_consen 33 AKNVHIHHNIFYDT-GTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQ 83 (198)
T ss_pred cccEEEECcEeecC-CcCCCCceeeeEEeccccccEEEeeeecccccceEEE
Confidence 57999999999854 21 111 111122478899999999999854 4443
No 91
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=83.60 E-value=38 Score=31.58 Aligned_cols=129 Identities=14% Similarity=0.075 Sum_probs=84.4
Q ss_pred eccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCcc-CEEEEecEEecCCceEecCCCCCcccc
Q 012788 185 SENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSD-NVCIEDCIIAMGHDAISLKSGWDEYGI 263 (456)
Q Consensus 185 ~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~-nV~I~n~~i~~gDD~iai~sg~~~~g~ 263 (456)
-+..+|+|+.|-.+...+||... +.+|+|+....- .-|.+.+.... .++|.+.-.+..+|-|-=..+
T Consensus 60 e~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwedV----cEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng------ 127 (215)
T PF03211_consen 60 EDGATLKNVIIGANQADGIHCKG--SCTLENVWWEDV----CEDAATFKGDGGTVTIIGGGARNASDKVFQHNG------ 127 (215)
T ss_dssp ETTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-S------
T ss_pred cCCCEEEEEEEcCCCcCceEEcC--CEEEEEEEeccc----ceeeeEEcCCCceEEEeCCcccCCCccEEEecC------
Confidence 45789999998777778999887 889999998864 46888887766 889999998887666543333
Q ss_pred ccCCCcccEEEEEEEEecCCCCeeEecccc---c--CcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEc
Q 012788 264 AYGRPTTDVHIRRVLLQSSSGSSVAFGSEM---S--GGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISD 333 (456)
Q Consensus 264 ~~~~~s~ni~I~n~~~~~~~~~gi~igs~~---~--~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~n 333 (456)
.-.+.|.|.+..+ .|--+-|-. . +.-++|.+++........-+.|-...++...|+++.+..
T Consensus 128 -----~Gtv~I~nF~a~d---~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD~ati~~~~~~~ 194 (215)
T PF03211_consen 128 -----GGTVTIKNFYAED---FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGDTATISNSCIKG 194 (215)
T ss_dssp -----SEEEEEEEEEEEE---EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTTTEEEEEEEEEE
T ss_pred -----ceeEEEEeEEEcC---CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCCeEEEEEEEecC
Confidence 4568888876653 232222211 1 234567777665544333455666666777788877776
No 92
>PLN02665 pectinesterase family protein
Probab=82.99 E-value=34 Score=34.69 Aligned_cols=115 Identities=12% Similarity=0.119 Sum_probs=72.0
Q ss_pred eecccceEEEEEEEECCCCC-----CCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEE
Q 012788 205 PVYCSNVHIQNISVHAPPES-----PYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVL 278 (456)
Q Consensus 205 ~~~~~nv~i~n~~i~~~~~~-----~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~ 278 (456)
...++++..+|++|.|.... .....+.+. ......+.||.|....|-+.... ..-.++||+
T Consensus 150 ~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~~-------------gr~yf~~Cy 216 (366)
T PLN02665 150 IVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDDK-------------GRHFFKDCY 216 (366)
T ss_pred EEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccceeEeCC-------------CCEEEEeeE
Confidence 35678899999999996421 111233332 46889999999999888776544 346689999
Q ss_pred EecCCCCeeEecccccCcEEeEEEEeEEEECCcce-EEEEecCCCC--ceEEeEEEEceEecCcc
Q 012788 279 LQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNG-IEFRTTKGRG--GYIRQIVISDAELYNIN 340 (456)
Q Consensus 279 ~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~g-i~iks~~g~~--g~v~nI~~~ni~~~~~~ 340 (456)
+.+. --+=.|. -...|++|++.-...+ ...-|.+++. ..-....|.|+++....
T Consensus 217 IeG~--VDFIFG~------g~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~ 273 (366)
T PLN02665 217 IEGT--VDFIFGS------GKSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGTG 273 (366)
T ss_pred Eeec--cceeccc------cceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEEEEeeEEecCC
Confidence 9874 2222332 2468899999865443 2222322211 12234679999988754
No 93
>PLN02634 probable pectinesterase
Probab=78.81 E-value=36 Score=34.36 Aligned_cols=112 Identities=13% Similarity=0.121 Sum_probs=69.0
Q ss_pred cccceEEEEEEEECCCC-----CCCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEe
Q 012788 207 YCSNVHIQNISVHAPPE-----SPYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQ 280 (456)
Q Consensus 207 ~~~nv~i~n~~i~~~~~-----~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~ 280 (456)
..+++..+|++|.+... ..+...+.+. .+.+..+.+|.|....|-+.... ..-.++||++.
T Consensus 147 ~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~~-------------gR~yf~~CyIe 213 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDDA-------------GRHYFKECYIE 213 (359)
T ss_pred ECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccceeeeCC-------------CCEEEEeeEEc
Confidence 35678888888888632 1122333332 46789999999999888776543 35678999998
Q ss_pred cCCCCeeEecccccCcEEeEEEEeEEEECCcceEEEEecCCCC--ceEEeEEEEceEecCc
Q 012788 281 SSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRG--GYIRQIVISDAELYNI 339 (456)
Q Consensus 281 ~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~--g~v~nI~~~ni~~~~~ 339 (456)
+. --+-.|. -...|+||++.........-+.+++. ..-....|.|+++...
T Consensus 214 G~--VDFIFG~------g~a~Fe~C~I~s~~~~~g~ITA~~R~~~~~~~GfvF~~C~vtg~ 266 (359)
T PLN02634 214 GS--IDFIFGN------GRSMYKDCELHSIASRFGSIAAHGRTCPEEKTGFAFVGCRVTGT 266 (359)
T ss_pred cc--ccEEcCC------ceEEEeccEEEEecCCCcEEEeCCCCCCCCCcEEEEEcCEEcCC
Confidence 74 2222332 24679999997543221222333221 2224578899998763
No 94
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=78.36 E-value=41 Score=36.20 Aligned_cols=112 Identities=15% Similarity=0.203 Sum_probs=71.7
Q ss_pred ecccceEEEEEEEECCCCCCCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCC
Q 012788 206 VYCSNVHIQNISVHAPPESPYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSG 284 (456)
Q Consensus 206 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~ 284 (456)
...+++..+|++|.+.........+.+. .+..+.+.||.|....|-+...++ .-.+++|++.+.
T Consensus 327 v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~-------------rq~y~~C~I~Gt-- 391 (553)
T PLN02708 327 VLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSL-------------RQFYKSCRIQGN-- 391 (553)
T ss_pred EEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCCC-------------ceEEEeeEEeec--
Confidence 4567899999999987543333445543 478899999999998888776653 346899999874
Q ss_pred CeeEecccccCcEEeEEEEeEEEECCc------ce--EEEEecCCC--CceEEeEEEEceEecCc
Q 012788 285 SSVAFGSEMSGGISNVQVEKIHLYDSL------NG--IEFRTTKGR--GGYIRQIVISDAELYNI 339 (456)
Q Consensus 285 ~gi~igs~~~~~v~nI~v~n~~~~~~~------~g--i~iks~~g~--~g~v~nI~~~ni~~~~~ 339 (456)
--+-+|. ....|+||++.-.. .| -.| |.+++ ...-..+.|.|+++...
T Consensus 392 VDFIFG~------a~avfq~c~i~~~~~~~~~~~~~~~~i-TA~~r~~~~~~~G~vf~~C~it~~ 449 (553)
T PLN02708 392 VDFIFGN------SAAVFQDCAILIAPRQLKPEKGENNAV-TAHGRTDPAQSTGFVFQNCLINGT 449 (553)
T ss_pred CCEEecC------ceEEEEccEEEEeccccCCCCCCceEE-EeCCCCCCCCCceEEEEccEEecC
Confidence 2233332 35789999997321 11 122 22222 12234578888888653
No 95
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=77.66 E-value=53 Score=35.18 Aligned_cols=113 Identities=14% Similarity=0.199 Sum_probs=72.9
Q ss_pred EeecccceEEEEEEEECCCCCCCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecC
Q 012788 204 HPVYCSNVHIQNISVHAPPESPYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSS 282 (456)
Q Consensus 204 ~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~ 282 (456)
.....+++..+|++|.+.........+.+. .+.++.+.||.|....|-+...++ .-.++||++.+.
T Consensus 314 ~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~~-------------rqyy~~C~I~Gt 380 (537)
T PLN02506 314 VAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHSL-------------RQFYRECEIYGT 380 (537)
T ss_pred EEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecCC-------------ceEEEeeEEecc
Confidence 345678899999999987543333444442 478899999999998888776653 357899999874
Q ss_pred CCCeeEecccccCcEEeEEEEeEEEECCcc----eEEEEecCCCC--ceEEeEEEEceEecC
Q 012788 283 SGSSVAFGSEMSGGISNVQVEKIHLYDSLN----GIEFRTTKGRG--GYIRQIVISDAELYN 338 (456)
Q Consensus 283 ~~~gi~igs~~~~~v~nI~v~n~~~~~~~~----gi~iks~~g~~--g~v~nI~~~ni~~~~ 338 (456)
--+-+|. ....|+||++.-... .-.| |.+++. ..-..+.|.|+++..
T Consensus 381 --VDFIFG~------a~avfq~C~i~~r~~~~~~~~~i-TA~~r~~~~~~~G~vf~~c~i~~ 433 (537)
T PLN02506 381 --IDFIFGN------GAAVLQNCKIYTRVPLPLQKVTI-TAQGRKSPHQSTGFSIQDSYVLA 433 (537)
T ss_pred --cceEccC------ceeEEeccEEEEccCCCCCCceE-EccCCCCCCCCcEEEEEcCEEcc
Confidence 2223332 357899999974321 1122 223221 122457788888875
No 96
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=76.33 E-value=75 Score=33.91 Aligned_cols=114 Identities=14% Similarity=0.148 Sum_probs=73.0
Q ss_pred EeecccceEEEEEEEECCCCCCCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecC
Q 012788 204 HPVYCSNVHIQNISVHAPPESPYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSS 282 (456)
Q Consensus 204 ~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~ 282 (456)
.....+++..+|++|.+.........+.+. .+....+.+|.|....|-+...+ ..-.+++|++.+.
T Consensus 308 v~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~-------------~Rqyy~~C~I~Gt 374 (529)
T PLN02170 308 VAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHS-------------KRQFYRETDITGT 374 (529)
T ss_pred EEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCC-------------CCEEEEeeEEccc
Confidence 345667899999999987533333444442 47889999999999888887665 3446799999874
Q ss_pred CCCeeEecccccCcEEeEEEEeEEEECCcc---eEEEEecCCC--CceEEeEEEEceEecCc
Q 012788 283 SGSSVAFGSEMSGGISNVQVEKIHLYDSLN---GIEFRTTKGR--GGYIRQIVISDAELYNI 339 (456)
Q Consensus 283 ~~~gi~igs~~~~~v~nI~v~n~~~~~~~~---gi~iks~~g~--~g~v~nI~~~ni~~~~~ 339 (456)
--+=.|. ....|+||++.-... .-.| |.+++ ...-..+.|.|+++...
T Consensus 375 --VDFIFG~------a~avFq~C~I~~~~~~~~~g~I-TAq~R~~~~~~~Gfvf~~C~it~~ 427 (529)
T PLN02170 375 --VDFIFGN------SAVVFQSCNIAARKPSGDRNYV-TAQGRSDPNQNTGISIHNCRITAE 427 (529)
T ss_pred --cceeccc------ceEEEeccEEEEecCCCCceEE-EecCCCCCCCCceEEEEeeEEecC
Confidence 2222231 357899999875321 1223 22222 12224578999998764
No 97
>PLN02671 pectinesterase
Probab=75.55 E-value=86 Score=31.76 Aligned_cols=111 Identities=8% Similarity=0.045 Sum_probs=67.4
Q ss_pred ecccceEEEEEEEECCCC----CCCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEe
Q 012788 206 VYCSNVHIQNISVHAPPE----SPYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQ 280 (456)
Q Consensus 206 ~~~~nv~i~n~~i~~~~~----~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~ 280 (456)
...+++..+|++|.+... ......+.+. ...++.+.||.|....|-+.... ..-.++||++.
T Consensus 151 v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~~~-------------gR~yf~~CyIe 217 (359)
T PLN02671 151 IESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQDTLLDET-------------GSHYFYQCYIQ 217 (359)
T ss_pred EECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEeccccccEeCC-------------CcEEEEecEEE
Confidence 345778888888888631 1122333332 46889999999999888776544 34578999998
Q ss_pred cCCCCeeEecccccCcEEeEEEEeEEEECCcc-eEEEEecCCC--CceEEeEEEEceEecC
Q 012788 281 SSSGSSVAFGSEMSGGISNVQVEKIHLYDSLN-GIEFRTTKGR--GGYIRQIVISDAELYN 338 (456)
Q Consensus 281 ~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~-gi~iks~~g~--~g~v~nI~~~ni~~~~ 338 (456)
+. --+-.|. -...|+||++..... .-.|. .+++ ...-....|.|+++..
T Consensus 218 G~--VDFIFG~------g~A~Fe~C~I~s~~~~~G~IT-A~~r~~~~~~~GfvF~~C~itg 269 (359)
T PLN02671 218 GS--VDFIFGN------AKSLYQDCVIQSTAKRSGAIA-AHHRDSPTEDTGFSFVNCVING 269 (359)
T ss_pred Ee--ccEEecc------eeEEEeccEEEEecCCCeEEE-eeccCCCCCCccEEEEccEEcc
Confidence 74 2222332 357899999975421 11222 2111 1112356888888875
No 98
>PLN02432 putative pectinesterase
Probab=74.64 E-value=62 Score=31.77 Aligned_cols=109 Identities=15% Similarity=0.168 Sum_probs=68.9
Q ss_pred ecccceEEEEEEEECCCCCCCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCC
Q 012788 206 VYCSNVHIQNISVHAPPESPYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSG 284 (456)
Q Consensus 206 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~ 284 (456)
...+++.++|++|.+... +....+.+. ....+.+.+|.|....|-+.... ..-.++||++.+.
T Consensus 91 v~a~~f~a~nlt~~Nt~g-~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~~-------------gr~yf~~c~I~G~-- 154 (293)
T PLN02432 91 VLASDFVGRFLTIQNTFG-SSGKAVALRVAGDRAAFYGCRILSYQDTLLDDT-------------GRHYYRNCYIEGA-- 154 (293)
T ss_pred EECCCeEEEeeEEEeCCC-CCCceEEEEEcCCcEEEEcceEecccceeEECC-------------CCEEEEeCEEEec--
Confidence 345789999999998642 223344442 47889999999999888776554 3457899999874
Q ss_pred CeeEecccccCcEEeEEEEeEEEECCc--ceEEEEecCCC--CceEEeEEEEceEecC
Q 012788 285 SSVAFGSEMSGGISNVQVEKIHLYDSL--NGIEFRTTKGR--GGYIRQIVISDAELYN 338 (456)
Q Consensus 285 ~gi~igs~~~~~v~nI~v~n~~~~~~~--~gi~iks~~g~--~g~v~nI~~~ni~~~~ 338 (456)
--+-.|. -...|++|++.-.. .| .|.. +++ ...-.-+.|.|+++..
T Consensus 155 VDFIFG~------g~a~Fe~c~i~s~~~~~g-~itA-~~r~~~~~~~Gfvf~~c~itg 204 (293)
T PLN02432 155 TDFICGN------AASLFEKCHLHSLSPNNG-AITA-QQRTSASENTGFTFLGCKLTG 204 (293)
T ss_pred ccEEecC------ceEEEEeeEEEEecCCCC-eEEe-cCCCCCCCCceEEEEeeEEcc
Confidence 2233332 34789999997432 23 3322 211 1112347888888875
No 99
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=74.24 E-value=65 Score=33.29 Aligned_cols=127 Identities=9% Similarity=0.072 Sum_probs=72.7
Q ss_pred EeecccceEEEEEEEECCCC----CCCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEE
Q 012788 204 HPVYCSNVHIQNISVHAPPE----SPYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVL 278 (456)
Q Consensus 204 ~~~~~~nv~i~n~~i~~~~~----~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~ 278 (456)
.....+++..+|++|.+... ..+...+.+. ....+.+.+|.|....|-+.......+.+.. ......-.++||+
T Consensus 201 v~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~-~~~~gRqYf~~Cy 279 (422)
T PRK10531 201 FWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLE-TDRQPRTYVKNSY 279 (422)
T ss_pred EEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeecccccccccc-ccccccEEEEeCE
Confidence 34577899999999999743 1122333332 4788999999999988877764321000000 0012367899999
Q ss_pred EecCCCCeeEecccccCcEEeEEEEeEEEECCcc----eEEEEecCCCCceEEeEEEEceEecCc
Q 012788 279 LQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLN----GIEFRTTKGRGGYIRQIVISDAELYNI 339 (456)
Q Consensus 279 ~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~----gi~iks~~g~~g~v~nI~~~ni~~~~~ 339 (456)
+.+. --+-+|. -...|+||++.-... .-.|.........-..+.|.|+++...
T Consensus 280 IeG~--VDFIFG~------g~AvFenC~I~s~~~~~~~~g~ITA~~t~~~~~~GfvF~nCrit~~ 336 (422)
T PRK10531 280 IEGD--VDFVFGR------GAVVFDNTEFRVVNSRTQQEAYVFAPATLPNIYYGFLAINSRFNAS 336 (422)
T ss_pred Eeec--ccEEccC------ceEEEEcCEEEEecCCCCCceEEEecCCCCCCCCEEEEECCEEecC
Confidence 9874 2233332 357899999875421 112211110111223477888888763
No 100
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=73.83 E-value=66 Score=35.39 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=72.9
Q ss_pred ecccceEEEEEEEECCCCCCCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCC
Q 012788 206 VYCSNVHIQNISVHAPPESPYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSG 284 (456)
Q Consensus 206 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~ 284 (456)
...+++..+|++|.|.........+.+. .+....+.||.|....|-+...+ ..-.+++|++.+.
T Consensus 334 v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~-------------~Rqyy~~C~I~Gt-- 398 (670)
T PLN02217 334 IVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS-------------HRQFYRDCTISGT-- 398 (670)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC-------------CcEEEEeCEEEEe--
Confidence 3567889999999987543334455543 47889999999999888777655 3457899999874
Q ss_pred CeeEecccccCcEEeEEEEeEEEECCc----ceEEEEecCCCC--ceEEeEEEEceEecCc
Q 012788 285 SSVAFGSEMSGGISNVQVEKIHLYDSL----NGIEFRTTKGRG--GYIRQIVISDAELYNI 339 (456)
Q Consensus 285 ~gi~igs~~~~~v~nI~v~n~~~~~~~----~gi~iks~~g~~--g~v~nI~~~ni~~~~~ 339 (456)
--+-+|. ....|+||++.-.. ..-.| |.+++. ..-..+.|.|+++...
T Consensus 399 VDFIFG~------a~avfq~C~I~~r~~~~~~~~~I-TAqgr~~~~~~tGfvf~~C~i~~~ 452 (670)
T PLN02217 399 IDFLFGD------AAAVFQNCTLLVRKPLLNQACPI-TAHGRKDPRESTGFVLQGCTIVGE 452 (670)
T ss_pred ccEEecC------ceEEEEccEEEEccCCCCCceeE-ecCCCCCCCCCceEEEEeeEEecC
Confidence 2222332 35789999997431 11223 233321 2234588999998764
No 101
>PLN02916 pectinesterase family protein
Probab=73.77 E-value=61 Score=34.34 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=72.0
Q ss_pred eecccceEEEEEEEECCCCCCCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCC
Q 012788 205 PVYCSNVHIQNISVHAPPESPYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSS 283 (456)
Q Consensus 205 ~~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~ 283 (456)
....+++..+|++|.+.........+.+. .+....+.+|.|....|-+...++ .-.+++|++.+.
T Consensus 273 ~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~~-------------Rqyy~~C~I~Gt- 338 (502)
T PLN02916 273 GVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHSL-------------RQFYRDCHIYGT- 338 (502)
T ss_pred EEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCCC-------------CEEEEecEEecc-
Confidence 34567889999999987543334445443 468899999999998888877653 346899999874
Q ss_pred CCeeEecccccCcEEeEEEEeEEEECCcc----eEEEEecCCC--CceEEeEEEEceEecCc
Q 012788 284 GSSVAFGSEMSGGISNVQVEKIHLYDSLN----GIEFRTTKGR--GGYIRQIVISDAELYNI 339 (456)
Q Consensus 284 ~~gi~igs~~~~~v~nI~v~n~~~~~~~~----gi~iks~~g~--~g~v~nI~~~ni~~~~~ 339 (456)
--+-.|. ....|+||++.-... .-.| |.+++ ...-.-+.|.|+++...
T Consensus 339 -VDFIFG~------a~avFq~C~I~~~~~~~~~~g~I-TAq~r~~~~~~tGfvf~~C~it~~ 392 (502)
T PLN02916 339 -IDFIFGD------AAVVFQNCDIFVRRPMDHQGNMI-TAQGRDDPHENTGISIQHSRVRAS 392 (502)
T ss_pred -cceeccC------ceEEEecCEEEEecCCCCCcceE-EecCCCCCCCCcEEEEEeeEEecC
Confidence 2222332 457889998864321 1122 22222 12234577888888763
No 102
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=71.92 E-value=85 Score=33.26 Aligned_cols=112 Identities=11% Similarity=0.070 Sum_probs=72.1
Q ss_pred ecccceEEEEEEEECCCCCCCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCC
Q 012788 206 VYCSNVHIQNISVHAPPESPYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSG 284 (456)
Q Consensus 206 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~ 284 (456)
...+++..+|++|.+.........+.+. .+....+.+|.|....|-+...+ ..-.+++|++.+.
T Consensus 281 v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~-------------~RqyyrdC~I~Gt-- 345 (509)
T PLN02488 281 SNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHR-------------DRQFYRECFITGT-- 345 (509)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCC-------------CCEEEEeeEEeec--
Confidence 4467788999999986543334455553 46889999999999888877654 3457899999874
Q ss_pred CeeEecccccCcEEeEEEEeEEEECCcc----eEEEEecCCCC--ceEEeEEEEceEecCc
Q 012788 285 SSVAFGSEMSGGISNVQVEKIHLYDSLN----GIEFRTTKGRG--GYIRQIVISDAELYNI 339 (456)
Q Consensus 285 ~gi~igs~~~~~v~nI~v~n~~~~~~~~----gi~iks~~g~~--g~v~nI~~~ni~~~~~ 339 (456)
--+-+|. ....|+||++.-... .-.| |.+++. ..-.-+.|.|+++...
T Consensus 346 VDFIFG~------a~avFq~C~I~sr~~~~~~~~~I-TAq~R~~~~~~tGfvf~~C~it~~ 399 (509)
T PLN02488 346 VDFICGN------AAAVFQFCQIVARQPMMGQSNVI-TAQSRESKDDNSGFSIQKCNITAS 399 (509)
T ss_pred cceEecc------eEEEEEccEEEEecCCCCCCEEE-EeCCCCCCCCCcEEEEEeeEEecC
Confidence 2222332 457899999974321 1123 333321 2224578888888764
No 103
>PLN02176 putative pectinesterase
Probab=70.90 E-value=1.2e+02 Score=30.61 Aligned_cols=112 Identities=20% Similarity=0.205 Sum_probs=69.5
Q ss_pred cccceEEEEEEEECCCCC------CCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEE
Q 012788 207 YCSNVHIQNISVHAPPES------PYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLL 279 (456)
Q Consensus 207 ~~~nv~i~n~~i~~~~~~------~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~ 279 (456)
..+++..+|++|.+.... .....+.+. ..+...+.||.|....|-+.... ..-.++||++
T Consensus 120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~~-------------gRqyf~~CyI 186 (340)
T PLN02176 120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDGK-------------GRHYYKRCVI 186 (340)
T ss_pred ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccceeEeCC-------------cCEEEEecEE
Confidence 468899999999986421 112333332 46889999999999888776544 3567899999
Q ss_pred ecCCCCeeEecccccCcEEeEEEEeEEEECCc-----c-eEEEEecCCCC--ceEEeEEEEceEecCc
Q 012788 280 QSSSGSSVAFGSEMSGGISNVQVEKIHLYDSL-----N-GIEFRTTKGRG--GYIRQIVISDAELYNI 339 (456)
Q Consensus 280 ~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~-----~-gi~iks~~g~~--g~v~nI~~~ni~~~~~ 339 (456)
.+. --+-.|. ....|+||++.-.. . .-..-+.+++. ..-.-..|.|+++...
T Consensus 187 eG~--VDFIFG~------a~a~Fe~C~I~s~~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~ 246 (340)
T PLN02176 187 SGG--IDFIFGY------AQSIFEGCTLKLTLGIYPPNEPYGTITAQGRPSPSDKGGFVFKDCTVTGV 246 (340)
T ss_pred Eec--ccEEecC------ceEEEeccEEEEecccCCCCCCcEEEEeCCCCCCCCCcEEEEECCEEccC
Confidence 874 2222332 35789999997431 1 11111222211 1223578889988763
No 104
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=70.43 E-value=57 Score=34.59 Aligned_cols=114 Identities=13% Similarity=0.143 Sum_probs=71.3
Q ss_pred eecccceEEEEEEEECCCCCCCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCC
Q 012788 205 PVYCSNVHIQNISVHAPPESPYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSS 283 (456)
Q Consensus 205 ~~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~ 283 (456)
....+++..+|++|.+.........+.+. .+.+..+.+|.|....|-+...++ .-.+++|++.+.
T Consensus 266 ~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~~-------------rqyy~~C~I~G~- 331 (497)
T PLN02698 266 TITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAAL-------------RQFYRECDIYGT- 331 (497)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCCC-------------cEEEEeeEEEec-
Confidence 34668899999999987543233444442 478899999999998888876653 347889999874
Q ss_pred CCeeEecccccCcEEeEEEEeEEEECCcc--e-EEEEecCCC--CceEEeEEEEceEecCc
Q 012788 284 GSSVAFGSEMSGGISNVQVEKIHLYDSLN--G-IEFRTTKGR--GGYIRQIVISDAELYNI 339 (456)
Q Consensus 284 ~~gi~igs~~~~~v~nI~v~n~~~~~~~~--g-i~iks~~g~--~g~v~nI~~~ni~~~~~ 339 (456)
--+-+|. ....|+||++.-... + -..-+.+++ ...-.-+.|.|+++...
T Consensus 332 -vDFIFG~------a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~ 385 (497)
T PLN02698 332 -IDFIFGN------AAAVFQNCYLFLRRPHGKSYNVILANGRSDPGQNTGFSLQSCRIRTS 385 (497)
T ss_pred -cceEecc------cceeecccEEEEecCCCCCceEEEecCCCCCCCCceEEEEeeEEecC
Confidence 2223332 346899999974221 1 111122222 12224578888888764
No 105
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=69.89 E-value=1.2e+02 Score=32.85 Aligned_cols=114 Identities=15% Similarity=0.221 Sum_probs=72.1
Q ss_pred ecccceEEEEEEEECCCCCCCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCC
Q 012788 206 VYCSNVHIQNISVHAPPESPYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSG 284 (456)
Q Consensus 206 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~ 284 (456)
...+++..+|++|.+.........+.+. .+....+.+|.|....|-+...+ ..-.+++|++.+.
T Consensus 344 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~-------------~Rqyy~~C~I~Gt-- 408 (572)
T PLN02990 344 INGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHS-------------HRQFFRDCTVSGT-- 408 (572)
T ss_pred EEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCC-------------CcEEEEeeEEecc--
Confidence 3567889999999987543334445543 47889999999999888777655 3456899999874
Q ss_pred CeeEecccccCcEEeEEEEeEEEECCc--ce-EEEEecCCCC--ceEEeEEEEceEecCcc
Q 012788 285 SSVAFGSEMSGGISNVQVEKIHLYDSL--NG-IEFRTTKGRG--GYIRQIVISDAELYNIN 340 (456)
Q Consensus 285 ~gi~igs~~~~~v~nI~v~n~~~~~~~--~g-i~iks~~g~~--g~v~nI~~~ni~~~~~~ 340 (456)
--+-+|. ....|+||++.-.. .| -..-|.+++. ..-..+.|.|+++....
T Consensus 409 VDFIFG~------a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 409 VDFIFGD------AKVVLQNCNIVVRKPMKGQSCMITAQGRSDVRESTGLVLQNCHITGEP 463 (572)
T ss_pred cceEccC------ceEEEEccEEEEecCCCCCceEEEeCCCCCCCCCceEEEEeeEEecCc
Confidence 2222332 34789999997421 11 1122222221 12245889999987643
No 106
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=69.70 E-value=69 Score=34.37 Aligned_cols=112 Identities=15% Similarity=0.178 Sum_probs=60.4
Q ss_pred ecccceEEEEEEEECCCCCCCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCC
Q 012788 206 VYCSNVHIQNISVHAPPESPYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSG 284 (456)
Q Consensus 206 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~ 284 (456)
...+++..+|++|.+.........+.+. .+....+.+|.|....|-+...+ ..-.++||++.+.
T Consensus 309 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~-------------~Rqyy~~C~I~Gt-- 373 (539)
T PLN02995 309 IEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHS-------------QRQFYRECYIYGT-- 373 (539)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCC-------------CceEEEeeEEeec--
Confidence 3456777778888775432223444442 35677788888887777665544 2336777877763
Q ss_pred CeeEecccccCcEEeEEEEeEEEECCcc--e-EEEEecCCCC--ceEEeEEEEceEecC
Q 012788 285 SSVAFGSEMSGGISNVQVEKIHLYDSLN--G-IEFRTTKGRG--GYIRQIVISDAELYN 338 (456)
Q Consensus 285 ~gi~igs~~~~~v~nI~v~n~~~~~~~~--g-i~iks~~g~~--g~v~nI~~~ni~~~~ 338 (456)
--+-+|. ....|+||++.-... | -..-|.+++. ..-..+.|.|+++..
T Consensus 374 VDFIFG~------a~avf~~C~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~ 426 (539)
T PLN02995 374 VDFIFGN------AAAVFQNCIILPRRPLKGQANVITAQGRADPFQNTGISIHNSRILP 426 (539)
T ss_pred cceEecc------cceEEeccEEEEecCCCCCcceEecCCCCCCCCCceEEEEeeEEec
Confidence 1222221 346777777764310 0 0111222221 222456777777765
No 107
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=69.11 E-value=1.5e+02 Score=31.79 Aligned_cols=113 Identities=18% Similarity=0.210 Sum_probs=71.8
Q ss_pred eecccceEEEEEEEECCCCCCCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCC
Q 012788 205 PVYCSNVHIQNISVHAPPESPYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSS 283 (456)
Q Consensus 205 ~~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~ 283 (456)
....+++..+|++|.+.........+.+. .+..+.+.+|.|....|-+...++ .-.+++|++.+.
T Consensus 301 ~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~-------------Rqyy~~C~IeGt- 366 (530)
T PLN02933 301 GVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSA-------------KQFYRECDIYGT- 366 (530)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCCC-------------ceEEEeeEEecc-
Confidence 44567889999999986543333445553 478899999999998888776653 347899999974
Q ss_pred CCeeEecccccCcEEeEEEEeEEEECCc----ceEEEEecCCCC--ceEEeEEEEceEecCc
Q 012788 284 GSSVAFGSEMSGGISNVQVEKIHLYDSL----NGIEFRTTKGRG--GYIRQIVISDAELYNI 339 (456)
Q Consensus 284 ~~gi~igs~~~~~v~nI~v~n~~~~~~~----~gi~iks~~g~~--g~v~nI~~~ni~~~~~ 339 (456)
--+=+|. ....|+||++.-.. ..-.| |.+++. ..-..+.|.|+++...
T Consensus 367 -VDFIFG~------a~avFq~C~i~~~~~~~~~~~~i-TAq~r~~~~~~tGfvf~~C~it~~ 420 (530)
T PLN02933 367 -IDFIFGN------AAVVFQNCSLYARKPNPNHKIAF-TAQSRNQSDQPTGISIISSRILAA 420 (530)
T ss_pred -cceeccC------ceEEEeccEEEEeccCCCCceEE-EecCCCCCCCCceEEEEeeEEecC
Confidence 2222332 34788999986432 11122 222221 1224578888888753
No 108
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=68.91 E-value=23 Score=34.96 Aligned_cols=111 Identities=12% Similarity=0.161 Sum_probs=58.3
Q ss_pred ecccceEEEEEEEECCCCCCCC--ceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCC
Q 012788 206 VYCSNVHIQNISVHAPPESPYT--VGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSS 283 (456)
Q Consensus 206 ~~~~nv~i~n~~i~~~~~~~n~--DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~ 283 (456)
...+++.++|++|.+....... -.+.+ .++++.+.+|.|....|-+.... ....++||++.+.
T Consensus 84 v~a~~f~~~nit~~Nt~g~~~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~~~-------------~r~y~~~c~IeG~- 148 (298)
T PF01095_consen 84 VNADDFTAENITFENTAGPSGGQAVALRV-SGDRAAFYNCRFLGYQDTLYANG-------------GRQYFKNCYIEGN- 148 (298)
T ss_dssp E-STT-EEEEEEEEEHCSGSG----SEEE-T-TSEEEEEEEEE-STT-EEE-S-------------SEEEEES-EEEES-
T ss_pred ccccceeeeeeEEecCCCCcccceeeeee-cCCcEEEEEeEEccccceeeecc-------------ceeEEEeeEEEec-
Confidence 3467899999999885422112 23333 45789999999999888776554 3567889999874
Q ss_pred CCeeEecccccCcEEeEEEEeEEEECCc----ceEEEEecC-CCCceEEeEEEEceEecC
Q 012788 284 GSSVAFGSEMSGGISNVQVEKIHLYDSL----NGIEFRTTK-GRGGYIRQIVISDAELYN 338 (456)
Q Consensus 284 ~~gi~igs~~~~~v~nI~v~n~~~~~~~----~gi~iks~~-g~~g~v~nI~~~ni~~~~ 338 (456)
--+=.|. ....|+||++.-.. .+-.|.... .....-..+.|.|+++..
T Consensus 149 -vDFIfG~------~~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vF~~c~i~~ 201 (298)
T PF01095_consen 149 -VDFIFGN------GTAVFENCTIHSRRPGGGQGGYITAQGRTSPSQKSGFVFDNCTITG 201 (298)
T ss_dssp -EEEEEES------SEEEEES-EEEE--SSTSSTEEEEEE---CTTSS-EEEEES-EEEE
T ss_pred -CcEEECC------eeEEeeeeEEEEeccccccceeEEeCCccccCCCeEEEEEEeEEec
Confidence 2333342 24578899887431 112232110 001122456788888775
No 109
>PLN02314 pectinesterase
Probab=66.45 E-value=80 Score=34.27 Aligned_cols=113 Identities=12% Similarity=0.130 Sum_probs=68.7
Q ss_pred ecccceEEEEEEEECCCCCCCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCC
Q 012788 206 VYCSNVHIQNISVHAPPESPYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSG 284 (456)
Q Consensus 206 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~ 284 (456)
...+++..+|++|.+.........+.+. .+....+.||.|....|-+...++ .-.++||++.+.
T Consensus 362 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~-------------rq~y~~C~I~Gt-- 426 (586)
T PLN02314 362 AAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSN-------------RQFYRDCDITGT-- 426 (586)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCCC-------------CEEEEeeEEEec--
Confidence 4567888899999886433333444442 467788999999988887766553 347888998864
Q ss_pred CeeEecccccCcEEeEEEEeEEEECCc--ce-EEEEecCCC--CceEEeEEEEceEecCc
Q 012788 285 SSVAFGSEMSGGISNVQVEKIHLYDSL--NG-IEFRTTKGR--GGYIRQIVISDAELYNI 339 (456)
Q Consensus 285 ~gi~igs~~~~~v~nI~v~n~~~~~~~--~g-i~iks~~g~--~g~v~nI~~~ni~~~~~ 339 (456)
--+=+|. ....|+||.+.-.. .+ -..-|.+++ ...-..+.|.|+++...
T Consensus 427 vDFIFG~------a~avf~~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 480 (586)
T PLN02314 427 IDFIFGN------AAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQRCTISAF 480 (586)
T ss_pred cceeccC------ceeeeeccEEEEecCCCCCCceEecCCCCCCCCCCEEEEEeeEEecC
Confidence 2222231 35788999886421 00 112233332 12234578888888764
No 110
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=66.05 E-value=48 Score=35.76 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=66.6
Q ss_pred ecccceEEEEEEEECCCCCCCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCC
Q 012788 206 VYCSNVHIQNISVHAPPESPYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSG 284 (456)
Q Consensus 206 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~ 284 (456)
...+++..+|++|.+.........+.+. .+....+.+|.|....|-+...++ .-.+++|++.+.
T Consensus 337 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~-------------Rqyy~~C~I~Gt-- 401 (566)
T PLN02713 337 VVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSL-------------RQFYRECDIYGT-- 401 (566)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCC-------------CEEEEeeEEecc--
Confidence 3457888899999886543333444442 467788999999888787776552 347888888864
Q ss_pred CeeEecccccCcEEeEEEEeEEEECCcc--e-EEEEecCCC--CceEEeEEEEceEecC
Q 012788 285 SSVAFGSEMSGGISNVQVEKIHLYDSLN--G-IEFRTTKGR--GGYIRQIVISDAELYN 338 (456)
Q Consensus 285 ~gi~igs~~~~~v~nI~v~n~~~~~~~~--g-i~iks~~g~--~g~v~nI~~~ni~~~~ 338 (456)
--+=+|. -.+.|+||.+.-... + -..-|.+++ ...-..+.|.|+++..
T Consensus 402 VDFIFG~------a~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~ 454 (566)
T PLN02713 402 VDFIFGN------AAVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKA 454 (566)
T ss_pred cceeccc------ceEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEec
Confidence 2222231 357888888864310 0 011122221 1122457788888765
No 111
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=64.22 E-value=1.8e+02 Score=30.07 Aligned_cols=30 Identities=13% Similarity=0.229 Sum_probs=24.7
Q ss_pred CCcEEEecCCceeeeeeEeccceEEEeccC
Q 012788 74 GGAQLYVPSGKWLTGSFNLTSHLTLFLEKG 103 (456)
Q Consensus 74 gg~~v~iP~G~Yl~g~l~L~s~~tL~l~~g 103 (456)
-...+++-+|+|....|.+.|.+++..+.+
T Consensus 47 ~e~LIFlH~G~~e~~~i~I~sdvqiiGAs~ 76 (625)
T KOG1777|consen 47 EEKLIFLHEGTHETETIRITSDVQIIGASP 76 (625)
T ss_pred ccceEEEEeccccceEEEEcCCeeEeccCC
Confidence 467888999999988999999998876543
No 112
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=63.32 E-value=56 Score=35.07 Aligned_cols=112 Identities=15% Similarity=0.216 Sum_probs=70.4
Q ss_pred ecccceEEEEEEEECCCCCCCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCC
Q 012788 206 VYCSNVHIQNISVHAPPESPYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSG 284 (456)
Q Consensus 206 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~ 284 (456)
...+++..+|++|.+.........+.+. .+..+.+.+|.|....|-+...+ ..-.+++|++.+.
T Consensus 314 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~-------------~Rqyy~~C~I~Gt-- 378 (541)
T PLN02416 314 VSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHS-------------FRQFYRECDIYGT-- 378 (541)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCC-------------CceEEEeeEEeec--
Confidence 3468899999999987543333444442 46889999999999888776654 3457899999874
Q ss_pred CeeEecccccCcEEeEEEEeEEEECCcc--e-EEEEecCCCC--ceEEeEEEEceEecC
Q 012788 285 SSVAFGSEMSGGISNVQVEKIHLYDSLN--G-IEFRTTKGRG--GYIRQIVISDAELYN 338 (456)
Q Consensus 285 ~gi~igs~~~~~v~nI~v~n~~~~~~~~--g-i~iks~~g~~--g~v~nI~~~ni~~~~ 338 (456)
--+=+|. ....|+||++.-... | ...-|.+++. ..-..+.|.|+++..
T Consensus 379 VDFIFG~------a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~ 431 (541)
T PLN02416 379 IDYIFGN------AAVVFQACNIVSKMPMPGQFTVITAQSRDTPDEDTGISIQNCSILA 431 (541)
T ss_pred cceeecc------ceEEEeccEEEEecCCCCCceEEECCCCCCCCCCCEEEEEeeEEec
Confidence 2222332 357889999865321 1 1122323221 122457788888865
No 113
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=62.45 E-value=63 Score=34.67 Aligned_cols=113 Identities=14% Similarity=0.170 Sum_probs=71.9
Q ss_pred eecccceEEEEEEEECCCCCCCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCC
Q 012788 205 PVYCSNVHIQNISVHAPPESPYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSS 283 (456)
Q Consensus 205 ~~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~ 283 (456)
....+++..+|++|.+.........+.+. .+....+.+|.|....|-+...++ .-.++||++.+.
T Consensus 309 ~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~-------------rq~y~~c~I~Gt- 374 (538)
T PLN03043 309 AVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSL-------------RQFYRECDIYGT- 374 (538)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCC-------------cEEEEeeEEeec-
Confidence 34568899999999986543334455543 467799999999998888877653 357889999874
Q ss_pred CCeeEecccccCcEEeEEEEeEEEECCc----ceEEEEecCCCC--ceEEeEEEEceEecCc
Q 012788 284 GSSVAFGSEMSGGISNVQVEKIHLYDSL----NGIEFRTTKGRG--GYIRQIVISDAELYNI 339 (456)
Q Consensus 284 ~~gi~igs~~~~~v~nI~v~n~~~~~~~----~gi~iks~~g~~--g~v~nI~~~ni~~~~~ 339 (456)
--+=+|. ....|+||++.-.. ..-.| |.+++. ..-..+.|.|+++...
T Consensus 375 -VDFIFG~------a~avfq~c~i~~r~~~~~~~~~i-TA~~r~~~~~~tG~~~~~c~i~~~ 428 (538)
T PLN03043 375 -VDFIFGN------AAAIFQNCNLYARKPMANQKNAF-TAQGRTDPNQNTGISIINCTIEAA 428 (538)
T ss_pred -cceEeec------ceeeeeccEEEEecCCCCCCceE-EecCCCCCCCCceEEEEecEEecC
Confidence 2222332 35789999996431 01112 222211 1223578888888753
No 114
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=61.97 E-value=73 Score=34.61 Aligned_cols=112 Identities=11% Similarity=0.137 Sum_probs=70.1
Q ss_pred ecccceEEEEEEEECCCCCCCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCC
Q 012788 206 VYCSNVHIQNISVHAPPESPYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSG 284 (456)
Q Consensus 206 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~ 284 (456)
...+++..+|++|.|.........+.+. .+....+.||.|....|-+...+ ..-.++||++.+.
T Consensus 369 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~-------------~Rqyy~~C~I~Gt-- 433 (596)
T PLN02745 369 ALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQT-------------HRQFYRSCVITGT-- 433 (596)
T ss_pred EEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCC-------------CcEEEEeeEEEee--
Confidence 4567889999999986432223344442 47889999999999888776654 3457899999874
Q ss_pred CeeEecccccCcEEeEEEEeEEEECCcc----eEEEEecCCCC--ceEEeEEEEceEecCc
Q 012788 285 SSVAFGSEMSGGISNVQVEKIHLYDSLN----GIEFRTTKGRG--GYIRQIVISDAELYNI 339 (456)
Q Consensus 285 ~gi~igs~~~~~v~nI~v~n~~~~~~~~----gi~iks~~g~~--g~v~nI~~~ni~~~~~ 339 (456)
--+=+|. ....|+||++.-... .-.| |.+++. ..-..+.|.|+++...
T Consensus 434 VDFIFG~------a~avf~~C~i~~~~~~~~~~~~i-TAq~r~~~~~~~Gfvf~~c~i~~~ 487 (596)
T PLN02745 434 IDFIFGD------AAAIFQNCLIFVRKPLPNQQNTV-TAQGRVDKFETTGIVLQNCRIAPD 487 (596)
T ss_pred ccEEecc------eeEEEEecEEEEecCCCCCCceE-EecCCCCCCCCceEEEEeeEEecC
Confidence 1233332 457889999874210 1122 223221 2234577888888753
No 115
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=61.70 E-value=66 Score=34.75 Aligned_cols=112 Identities=13% Similarity=0.186 Sum_probs=68.7
Q ss_pred ecccceEEEEEEEECCCCCCCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCC
Q 012788 206 VYCSNVHIQNISVHAPPESPYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSG 284 (456)
Q Consensus 206 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~ 284 (456)
...+++..+|++|.+.........+.+. .+....+.||.|....|-+...++ .-.++||++.+.
T Consensus 342 v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~-------------rq~y~~C~I~Gt-- 406 (565)
T PLN02468 342 VFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHAQ-------------RQFYRECNIYGT-- 406 (565)
T ss_pred EECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCCC-------------ceEEEeeEEecc--
Confidence 3457889999999886533233444442 467899999999988887776552 345889999874
Q ss_pred CeeEecccccCcEEeEEEEeEEEECCcc----eEEEEecCCC--CceEEeEEEEceEecCc
Q 012788 285 SSVAFGSEMSGGISNVQVEKIHLYDSLN----GIEFRTTKGR--GGYIRQIVISDAELYNI 339 (456)
Q Consensus 285 ~gi~igs~~~~~v~nI~v~n~~~~~~~~----gi~iks~~g~--~g~v~nI~~~ni~~~~~ 339 (456)
--+=+|. ....|+||++.-... .-.| |.+++ ...-..+.|.|+++...
T Consensus 407 vDFIFG~------a~avfq~c~i~~~~~~~~~~~~i-TA~~r~~~~~~~G~vf~~c~i~~~ 460 (565)
T PLN02468 407 VDFIFGN------SAVVFQNCNILPRRPMKGQQNTI-TAQGRTDPNQNTGISIQNCTILPL 460 (565)
T ss_pred cceeecc------ceEEEeccEEEEecCCCCCCceE-EecCCCCCCCCceEEEEccEEecC
Confidence 2222332 457889998863211 1112 22221 12234577888888753
No 116
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=61.51 E-value=63 Score=34.70 Aligned_cols=113 Identities=16% Similarity=0.181 Sum_probs=71.1
Q ss_pred eecccceEEEEEEEECCCCCCCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCC
Q 012788 205 PVYCSNVHIQNISVHAPPESPYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSS 283 (456)
Q Consensus 205 ~~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~ 283 (456)
....+++..+|++|.+.........+.+. .+....+.||.|....|-+...++ .-.++||++.+.
T Consensus 319 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~-------------Rqyy~~C~I~Gt- 384 (548)
T PLN02301 319 AAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHSL-------------RQFYRDSYITGT- 384 (548)
T ss_pred EEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecCC-------------cEEEEeeEEEec-
Confidence 34567889999999986533233444442 468899999999998888876653 347899999874
Q ss_pred CCeeEecccccCcEEeEEEEeEEEECCcc----eEEEEecCCC--CceEEeEEEEceEecCc
Q 012788 284 GSSVAFGSEMSGGISNVQVEKIHLYDSLN----GIEFRTTKGR--GGYIRQIVISDAELYNI 339 (456)
Q Consensus 284 ~~gi~igs~~~~~v~nI~v~n~~~~~~~~----gi~iks~~g~--~g~v~nI~~~ni~~~~~ 339 (456)
--+=+|. ....|+||++.-... .-.| |.+++ ...-..+.|.|+++...
T Consensus 385 -VDFIFG~------a~avfq~c~i~~~~~~~~~~~~i-TAqgr~~~~~~tG~vf~~c~i~~~ 438 (548)
T PLN02301 385 -VDFIFGN------AAVVFQNCKIVARKPMAGQKNMV-TAQGRTDPNQNTGISIQKCDIIAS 438 (548)
T ss_pred -cceeccc------ceeEEeccEEEEecCCCCCCceE-EecCCCCCCCCCEEEEEeeEEecC
Confidence 2222332 457889999864321 1112 22222 12234577888888753
No 117
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=61.38 E-value=84 Score=33.51 Aligned_cols=112 Identities=12% Similarity=0.138 Sum_probs=71.0
Q ss_pred eecccceEEEEEEEECCCCCCCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCC
Q 012788 205 PVYCSNVHIQNISVHAPPESPYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSS 283 (456)
Q Consensus 205 ~~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~ 283 (456)
....+++..+|++|.+.........+.+. .+....+.||.|....|-+...++ .-.+++|++.+.
T Consensus 289 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~-------------Rqyy~~C~I~Gt- 354 (520)
T PLN02201 289 AVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTM-------------RQFYRECRITGT- 354 (520)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCC-------------CEEEEeeEEeec-
Confidence 34567888999999987543333445543 467899999999998888876653 346789999874
Q ss_pred CCeeEecccccCcEEeEEEEeEEEECCc----ceEEEEecCCC--CceEEeEEEEceEecC
Q 012788 284 GSSVAFGSEMSGGISNVQVEKIHLYDSL----NGIEFRTTKGR--GGYIRQIVISDAELYN 338 (456)
Q Consensus 284 ~~gi~igs~~~~~v~nI~v~n~~~~~~~----~gi~iks~~g~--~g~v~nI~~~ni~~~~ 338 (456)
--+=+|. ....|+||++.-.. ..-.| |.+++ ...-..+.|.|+++..
T Consensus 355 -VDFIFG~------a~avf~~C~i~~~~~~~~~~~~i-TAq~r~~~~~~~Gfvf~~C~it~ 407 (520)
T PLN02201 355 -VDFIFGD------ATAVFQNCQILAKKGLPNQKNTI-TAQGRKDPNQPTGFSIQFSNISA 407 (520)
T ss_pred -ccEEecC------ceEEEEccEEEEecCCCCCCceE-EecCCCCCCCCcEEEEEeeEEec
Confidence 2222332 35789999987531 11122 22222 1223457788888865
No 118
>PLN02497 probable pectinesterase
Probab=61.28 E-value=1.7e+02 Score=29.34 Aligned_cols=111 Identities=15% Similarity=0.146 Sum_probs=68.4
Q ss_pred ecccceEEEEEEEECCCCCC-------CCceeee-cCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEE
Q 012788 206 VYCSNVHIQNISVHAPPESP-------YTVGIVP-DSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRV 277 (456)
Q Consensus 206 ~~~~nv~i~n~~i~~~~~~~-------n~DGi~~-~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~ 277 (456)
...+++..+|++|.+....+ ....+.+ ....+..+.||.|....|-+.... ..-.++||
T Consensus 112 v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~~-------------gRqyf~~C 178 (331)
T PLN02497 112 TLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDSD-------------GRHYFKRC 178 (331)
T ss_pred EecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccccceeeCC-------------CcEEEEeC
Confidence 45678999999999864311 1123333 246889999999999888776543 34578999
Q ss_pred EEecCCCCeeEecccccCcEEeEEEEeEEEECCcc------eEEEEecCCC--CceEEeEEEEceEecC
Q 012788 278 LLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLN------GIEFRTTKGR--GGYIRQIVISDAELYN 338 (456)
Q Consensus 278 ~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~------gi~iks~~g~--~g~v~nI~~~ni~~~~ 338 (456)
++.+. --+=.|. -...|+||++..... .-.|. .+++ ...-.-..|.|+++..
T Consensus 179 ~IeG~--VDFIFG~------g~a~Fe~C~I~s~~~~~~~~~~g~IT-A~~r~~~~~~~GfvF~~C~itg 238 (331)
T PLN02497 179 TIQGA--VDFIFGS------GQSIYESCVIQVLGGQLEPGLAGFIT-AQGRTNPYDANGFVFKNCLVYG 238 (331)
T ss_pred EEEec--ccEEccC------ceEEEEccEEEEecCcCCCCCceEEE-ecCCCCCCCCceEEEEccEEcc
Confidence 99874 2222332 357899999874321 11222 1211 1222356788888876
No 119
>PLN02197 pectinesterase
Probab=61.12 E-value=66 Score=34.85 Aligned_cols=114 Identities=14% Similarity=0.185 Sum_probs=71.3
Q ss_pred eecccceEEEEEEEECCCCCCCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCC
Q 012788 205 PVYCSNVHIQNISVHAPPESPYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSS 283 (456)
Q Consensus 205 ~~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~ 283 (456)
....+++..+|++|.+.........+.+. .+....+.+|.|....|-+...++ .-.+++|++.+.
T Consensus 360 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~-------------Rqyy~~C~I~Gt- 425 (588)
T PLN02197 360 QVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNG-------------RQFYRNIVVSGT- 425 (588)
T ss_pred EEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecCC-------------CEEEEeeEEEec-
Confidence 34567889999999986533233445543 478899999999998888876653 347889999874
Q ss_pred CCeeEecccccCcEEeEEEEeEEEECCc--ce-EEEEecCCCC---ceEEeEEEEceEecCc
Q 012788 284 GSSVAFGSEMSGGISNVQVEKIHLYDSL--NG-IEFRTTKGRG---GYIRQIVISDAELYNI 339 (456)
Q Consensus 284 ~~gi~igs~~~~~v~nI~v~n~~~~~~~--~g-i~iks~~g~~---g~v~nI~~~ni~~~~~ 339 (456)
--+=+| . ....|+||++.-.. .| -..-|.+++. ..-..+.|.|+++...
T Consensus 426 -VDFIFG-----~-a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~it~~ 480 (588)
T PLN02197 426 -VDFIFG-----K-SATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRIVPD 480 (588)
T ss_pred -cccccc-----c-eeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEEecC
Confidence 122222 1 23788999886321 11 1122334321 2234578888888763
No 120
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=61.10 E-value=1.4e+02 Score=30.68 Aligned_cols=87 Identities=23% Similarity=0.295 Sum_probs=42.3
Q ss_pred ccCEEEEecE-EecCCceEecCCCCC--------------ccccccCCCcccEEEEEEEEecCCCCeeEeccccc-CcEE
Q 012788 235 SDNVCIEDCI-IAMGHDAISLKSGWD--------------EYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMS-GGIS 298 (456)
Q Consensus 235 s~nV~I~n~~-i~~gDD~iai~sg~~--------------~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~-~~v~ 298 (456)
+-|..++|+. |..-.|++.+.+-.+ +|.+ .+--.|-.|+|....+ ..|+.++-... +.++
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~--~qLPtnHiidNi~~~~--~lGVG~~~DG~~~yvs 338 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPW--HQLPTNHIIDNILVRG--SLGVGIGMDGKGGYVS 338 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-T--T------EEEEEEEES---SSESCEEECCS-EEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCch--hhCchhhhhhhhheec--cceeeeeecCCCceEe
Confidence 4556666655 344566666655311 1111 1223566789998886 56766654332 4588
Q ss_pred eEEEEeEEEECCcceEEEEecCCCCceEEeEEEE
Q 012788 299 NVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVIS 332 (456)
Q Consensus 299 nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ 332 (456)
||++++|. ..|+.+++. .-.++||++-
T Consensus 339 ni~~~d~~----g~G~~~~~~---~~~ftNitvI 365 (549)
T PF09251_consen 339 NITVQDCA----GAGIFIRGT---NKVFTNITVI 365 (549)
T ss_dssp EEEEES-S----SESEEEECC---S-EEEEEEEE
T ss_pred eEEeeccc----CCceEEeec---CCceeeeEEE
Confidence 88888773 467777764 2344555443
No 121
>PLN02304 probable pectinesterase
Probab=56.93 E-value=1.1e+02 Score=31.10 Aligned_cols=111 Identities=16% Similarity=0.158 Sum_probs=68.0
Q ss_pred ecccceEEEEEEEECCCC-----CCCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEE
Q 012788 206 VYCSNVHIQNISVHAPPE-----SPYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLL 279 (456)
Q Consensus 206 ~~~~nv~i~n~~i~~~~~-----~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~ 279 (456)
...+++..+|++|.+... ......+.+. .+..+.+.+|.|....|-+.... ..-.++||++
T Consensus 159 v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~~-------------gR~Yf~~CyI 225 (379)
T PLN02304 159 VFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDR-------------GRHYFKDCYI 225 (379)
T ss_pred EECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeCC-------------CCEEEEeeEE
Confidence 345788899999988642 1122334442 47889999999999888776544 3466899999
Q ss_pred ecCCCCeeEecccccCcEEeEEEEeEEEECCcce---------EEEEecCCC--CceEEeEEEEceEecC
Q 012788 280 QSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNG---------IEFRTTKGR--GGYIRQIVISDAELYN 338 (456)
Q Consensus 280 ~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~g---------i~iks~~g~--~g~v~nI~~~ni~~~~ 338 (456)
.+. --+-.|. -...|+||++...... -.|.. +++ ...-.-..|.|+++..
T Consensus 226 eG~--VDFIFG~------g~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA-~~Rt~~~~~~GfvF~~C~itg 286 (379)
T PLN02304 226 QGS--IDFIFGD------ARSLYENCRLISMANPVPPGSKSINGAVTA-HGRTSKDENTGFSFVNCTIGG 286 (379)
T ss_pred ccc--ccEEecc------ceEEEEccEEEEecCCcccccccCceEEEe-cCCCCCCCCceEEEECCEEcc
Confidence 874 2233332 3468999998753211 12221 111 1122346688888875
No 122
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=56.74 E-value=74 Score=34.54 Aligned_cols=113 Identities=12% Similarity=0.178 Sum_probs=69.6
Q ss_pred eecccceEEEEEEEECCCCCCCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCC
Q 012788 205 PVYCSNVHIQNISVHAPPESPYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSS 283 (456)
Q Consensus 205 ~~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~ 283 (456)
....+++..+|++|.+.........+.+. .+....+.||.|....|-+...++ .-.++||++.+.
T Consensus 356 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~~-------------Rqyy~~C~I~Gt- 421 (587)
T PLN02484 356 AATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSN-------------RQFFRECDIYGT- 421 (587)
T ss_pred EEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCCC-------------cEEEEecEEEec-
Confidence 34567888999999886433233444443 467899999999998887776553 346889999864
Q ss_pred CCeeEecccccCcEEeEEEEeEEEECCc----ceEEEEecCCC--CceEEeEEEEceEecCc
Q 012788 284 GSSVAFGSEMSGGISNVQVEKIHLYDSL----NGIEFRTTKGR--GGYIRQIVISDAELYNI 339 (456)
Q Consensus 284 ~~gi~igs~~~~~v~nI~v~n~~~~~~~----~gi~iks~~g~--~g~v~nI~~~ni~~~~~ 339 (456)
--+=+|. ....|+||++.-.. ..-.| |.+++ ...-..+.|.|+++...
T Consensus 422 -VDFIFG~------a~avfq~C~i~~~~~~~~~~~~I-TAq~r~~~~~~~G~vf~~c~i~~~ 475 (587)
T PLN02484 422 -VDFIFGN------AAVVLQNCSIYARKPMAQQKNTI-TAQNRKDPNQNTGISIHACRILAA 475 (587)
T ss_pred -cceeccc------ceeEEeccEEEEecCCCCCceEE-EecCCCCCCCCcEEEEEeeEEecC
Confidence 2222231 35788999886421 11122 22222 12234578888888653
No 123
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=54.73 E-value=98 Score=33.60 Aligned_cols=113 Identities=13% Similarity=0.205 Sum_probs=67.8
Q ss_pred ecccceEEEEEEEECCCCCCCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCC
Q 012788 206 VYCSNVHIQNISVHAPPESPYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSG 284 (456)
Q Consensus 206 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~ 284 (456)
...+++..+|++|.+.........+.+. .+....+.||.|....|-+...++ .-.+++|++.+.
T Consensus 359 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~-------------rq~y~~c~I~Gt-- 423 (587)
T PLN02313 359 AVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSN-------------RQFFVKCHITGT-- 423 (587)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCCC-------------cEEEEeeEEeec--
Confidence 3457788888888886533233344442 467788999999988887776653 337888888864
Q ss_pred CeeEecccccCcEEeEEEEeEEEECCc--ce-EEEEecCCCC--ceEEeEEEEceEecCc
Q 012788 285 SSVAFGSEMSGGISNVQVEKIHLYDSL--NG-IEFRTTKGRG--GYIRQIVISDAELYNI 339 (456)
Q Consensus 285 ~gi~igs~~~~~v~nI~v~n~~~~~~~--~g-i~iks~~g~~--g~v~nI~~~ni~~~~~ 339 (456)
--+-+|. ....|+||++.-.. .| ...-|.+++. ..-..+.|.|+++...
T Consensus 424 vDFIFG~------a~avfq~c~i~~r~~~~~~~~~iTAqgr~~~~~~tG~v~~~c~i~~~ 477 (587)
T PLN02313 424 VDFIFGN------AAAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGT 477 (587)
T ss_pred cceeccc------eeEEEEccEEEEecCCCCCcceEEecCCCCCCCCceEEEEecEEecC
Confidence 1222221 45788888887431 11 1122323221 2234577888888653
No 124
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=49.91 E-value=17 Score=20.35 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=9.5
Q ss_pred eEEEEeEEEECCcc-eEEEE
Q 012788 299 NVQVEKIHLYDSLN-GIEFR 317 (456)
Q Consensus 299 nI~v~n~~~~~~~~-gi~ik 317 (456)
+++|++|++.+... |+.+.
T Consensus 3 ~~~i~~n~i~~~~~~Gi~i~ 22 (26)
T smart00710 3 NVTIENNTIRNNGGDGIYIG 22 (26)
T ss_pred CEEEECCEEEeCCCCcEEEe
Confidence 44555555555443 55443
No 125
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=47.14 E-value=1.5e+02 Score=24.49 Aligned_cols=13 Identities=31% Similarity=0.342 Sum_probs=8.4
Q ss_pred eccEEEEeEEEEe
Q 012788 185 SENVVVSNLTFLN 197 (456)
Q Consensus 185 ~~nv~I~~v~i~n 197 (456)
..+++++|+++.+
T Consensus 44 ~~~~~~~G~~~~~ 56 (146)
T smart00722 44 SNDVRVDGITIGG 56 (146)
T ss_pred CCCCEEECeEEEe
Confidence 4455777777766
No 126
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=32.97 E-value=1.2e+02 Score=25.14 Aligned_cols=68 Identities=13% Similarity=0.028 Sum_probs=42.4
Q ss_pred EeeccEEEEeEEEEeCC---cceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEe-cEEecCCceEe
Q 012788 183 ISSENVVVSNLTFLNAP---AYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIED-CIIAMGHDAIS 253 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~---~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n-~~i~~gDD~ia 253 (456)
....+..+.+-.+.+.. .+++.+..+.+..+.+-++. .. .. .+|+++....+..+.+ ..+....||+.
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~~-~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi~ 144 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-TN-ND-GDGNYLSDSSGGDLIGNRIYDNGRDGIA 144 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-ee-cC-CCCEEEeCCCCcEEEcceeEecCCCcEe
Confidence 55566667766666653 67888777666655555555 21 11 6888888777777777 44444555553
No 127
>PRK09752 adhesin; Provisional
Probab=32.30 E-value=9.2e+02 Score=28.62 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=15.9
Q ss_pred eEEEEeEEEECCc---ceEEEEecCCCCceEEeEEEEceE
Q 012788 299 NVQVEKIHLYDSL---NGIEFRTTKGRGGYIRQIVISDAE 335 (456)
Q Consensus 299 nI~v~n~~~~~~~---~gi~iks~~g~~g~v~nI~~~ni~ 335 (456)
++.|.||.|.+.. .|-.|........++-|++.++..
T Consensus 223 ~liI~NSsFtnNsA~~~GGAIY~~s~t~p~~~n~~~d~~~ 262 (1250)
T PRK09752 223 YTIINNTAFTNNTAEGYGGAIYTNSATAPYLIDISVDDSY 262 (1250)
T ss_pred eEEEeccEEEccccCCcceEEEecCCCCceEEEEEecccc
Confidence 4555566665432 233333322223444445444433
No 128
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=31.86 E-value=1.4e+02 Score=29.71 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=11.5
Q ss_pred EEeeccEEEEeEEEEeCCc
Q 012788 182 FISSENVVVSNLTFLNAPA 200 (456)
Q Consensus 182 ~~~~~nv~I~~v~i~ns~~ 200 (456)
+...+++..++++++|...
T Consensus 185 ~v~~ndf~~~nlT~en~~g 203 (405)
T COG4677 185 WVQNNDFQLQNLTIENTLG 203 (405)
T ss_pred eeecCCcccccceeecccC
Confidence 3345566677777776543
No 129
>PHA00672 hypothetical protein
Probab=23.22 E-value=1.2e+02 Score=25.77 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=17.5
Q ss_pred cEEEecCCceeeeeeEeccceEEEec
Q 012788 76 AQLYVPSGKWLTGSFNLTSHLTLFLE 101 (456)
Q Consensus 76 ~~v~iP~G~Yl~g~l~L~s~~tL~l~ 101 (456)
.++.||+|+-|+|.+.--+++ |.+.
T Consensus 50 Rei~IPkGt~LtG~~hkf~~~-ii~s 74 (152)
T PHA00672 50 RTIRIPAGVALTGALIKVSTV-LIFS 74 (152)
T ss_pred EEEeccCceeeeeeeeEeeEE-EEec
Confidence 478899999988876655555 4443
No 130
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=21.87 E-value=95 Score=20.23 Aligned_cols=15 Identities=33% Similarity=0.244 Sum_probs=7.7
Q ss_pred CCchHHHHHHHHHHh
Q 012788 1 MKMPVALLLLLALCS 15 (456)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (456)
||.+.+.++++++++
T Consensus 1 Mk~l~~a~~l~lLal 15 (36)
T PF08194_consen 1 MKCLSLAFALLLLAL 15 (36)
T ss_pred CceeHHHHHHHHHHH
Confidence 777776333333333
No 131
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=21.40 E-value=2.4e+02 Score=29.28 Aligned_cols=96 Identities=15% Similarity=0.166 Sum_probs=43.2
Q ss_pred EEEEeeccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEE-ecCCceEecCCCC
Q 012788 180 VEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCII-AMGHDAISLKSGW 258 (456)
Q Consensus 180 i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i-~~gDD~iai~sg~ 258 (456)
+.|..-..-.++...+.|..+-++.+....|=+|+..+|-+. ..|+-+..+---.+++..| .+.--++-||+
T Consensus 398 VyFydng~glle~ndi~~~~ysgvqirtGsNP~i~~NkIWgg-----qNGvLVyn~G~Gc~E~NeIFDNaMagVwIKT-- 470 (625)
T KOG1777|consen 398 VYFYDNGHGLLEQNDIRNHKYSGVQIRTGSNPKIRRNKIWGG-----QNGVLVYNGGLGCLEDNEIFDNAMAGVWIKT-- 470 (625)
T ss_pred EEEEeCCcchhhhhhhhhccccceEeecCCCCeeeecceecC-----cccEEEEcCcccccccccchhhhhcceEEec--
Confidence 444444444444444544444444444444444444444432 1233222221122222222 22333444444
Q ss_pred CccccccCCCcccEEEEEEEEecCCCCeeEeccc
Q 012788 259 DEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSE 292 (456)
Q Consensus 259 ~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~ 292 (456)
-++-+++.+.+.+.++.||.|-..
T Consensus 471 ----------ds~PtlrRNKI~dgRdgGicifng 494 (625)
T KOG1777|consen 471 ----------DSNPTLRRNKIYDGRDGGICIFNG 494 (625)
T ss_pred ----------CCCcceeecceecCCCCcEEEecC
Confidence 355566666666666667776543
Done!