BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012792
(456 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MUD|A Chain A, Structure Of The Tropomyosin Overlap Complex From Chicken
Smooth Muscle
pdb|3MUD|B Chain B, Structure Of The Tropomyosin Overlap Complex From Chicken
Smooth Muscle
Length = 175
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 36 RPVRCRLGNFSSYKVSRFCRKKRELICRVTDTQTEPDSNND--KEKEVHDGQEN 87
+ V RLG+F+ KV RELIC DT + + + D +EK H +EN
Sbjct: 105 KDVSFRLGSFNLEKVENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEEN 158
>pdb|2J0F|A Chain A, Structural Basis For Non-Competitive Product Inhibition In
Human Thymidine Phosphorylase: Implication For Drug
Design
pdb|2J0F|B Chain B, Structural Basis For Non-Competitive Product Inhibition In
Human Thymidine Phosphorylase: Implication For Drug
Design
pdb|2J0F|C Chain C, Structural Basis For Non-Competitive Product Inhibition In
Human Thymidine Phosphorylase: Implication For Drug
Design
pdb|2J0F|D Chain D, Structural Basis For Non-Competitive Product Inhibition In
Human Thymidine Phosphorylase: Implication For Drug
Design
Length = 482
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 131 DGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFV--TNQEPYEGGVLF 188
D +GE + G P P +P+QL E IR+ ++ + + + GF V + Q G +L
Sbjct: 17 DFSGEGSQGLPDPSPEPKQLPELIRMKRDGGRLSEADIRGFVAAVVNGSAQGAQIGAMLM 76
Query: 189 KGNLRG 194
LRG
Sbjct: 77 AIRLRG 82
>pdb|2WK5|A Chain A, Structural Features Of Native Human Thymidine
Phosphorylase And In Complex With 5-Iodouracil
pdb|2WK5|B Chain B, Structural Features Of Native Human Thymidine
Phosphorylase And In Complex With 5-Iodouracil
pdb|2WK5|C Chain C, Structural Features Of Native Human Thymidine
Phosphorylase And In Complex With 5-Iodouracil
pdb|2WK5|D Chain D, Structural Features Of Native Human Thymidine
Phosphorylase And In Complex With 5-Iodouracil
pdb|2WK6|A Chain A, Structural Features Of Native Human Thymidine
Phosphorylase And In Complex With 5-Iodouracil
pdb|2WK6|B Chain B, Structural Features Of Native Human Thymidine
Phosphorylase And In Complex With 5-Iodouracil
Length = 482
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 131 DGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFV--TNQEPYEGGVLF 188
D +GE + G P P +P+QL E IR+ ++ + + + GF V + Q G +L
Sbjct: 17 DFSGEGSQGLPDPSPEPKQLPELIRMKRDGGRLSEADIRGFVAAVVNGSAQGAQIGAMLM 76
Query: 189 KGNLRG 194
LRG
Sbjct: 77 AIRLRG 82
>pdb|3B4R|A Chain A, Site-2 Protease From Methanocaldococcus Jannaschii
pdb|3B4R|B Chain B, Site-2 Protease From Methanocaldococcus Jannaschii
Length = 224
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 74/183 (40%), Gaps = 45/183 (24%)
Query: 275 LSTFDNLNLLTNGLPGALVTALV---IGVHELGHILAAKSTGVELGVPYFVPSWQIGSFG 331
L L+++ N + A++ L+ + +HELGH AK GV++ +P IG
Sbjct: 25 LVVIIGLSIMNNSIFWAVLFILLFVSVVLHELGHSYVAKKYGVKIEKILLLP---IGGVA 81
Query: 332 AITRIRNIVSKREDLLKVAAAGPLAXXXXXXXXXXXXXXXPPSDGIGIVVDASVFHESXX 391
+ +I +E L++ AGPL GI +++ + F
Sbjct: 82 MMDKI-----PKEGELRIGIAGPLVSFII---------------GIVLLIVSQFF----- 116
Query: 392 XXXXXXXXXXDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKVF 451
D+ +G P+ ++ G N IPA +DGGRI A+ +K
Sbjct: 117 ----------DININGYPLLYTLSLLNLMLG----GFNLIPAFPMDGGRILRAILSKKYG 162
Query: 452 HLK 454
+LK
Sbjct: 163 YLK 165
>pdb|1UOU|A Chain A, Crystal Structure Of Human Thymidine Phosphorylase In
Complex With A Small Molecule Inhibitor
Length = 474
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 131 DGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFV--TNQEPYEGGVLF 188
D +GE + G P P +P+QL E IR+ ++ + + + GF V + Q G +L
Sbjct: 11 DFSGEGSQGLPDPSPEPKQLPELIRMKRDGGRLSEADIRGFVAAVVNGSAQGAQIGAMLM 70
Query: 189 KGNLRG 194
LRG
Sbjct: 71 AIRLRG 76
>pdb|1VSY|5 Chain 5, Proteasome Activator Complex
pdb|1VSY|8 Chain 8, Proteasome Activator Complex
pdb|3L5Q|6 Chain 6, Proteasome Activator Complex
pdb|3L5Q|8 Chain 8, Proteasome Activator Complex
Length = 997
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 112 VENQINGNDVADTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGF 171
V+NQ N + ++D ++ + N G PL V P+++D YI+ E I L+D V G
Sbjct: 663 VQNQSNPS-ISDPTTLLEAERNDPDGLGLPLKSV-PEKVDAYIKKQFEIIKNLEDSVVGL 720
Query: 172 D-TFFVTNQEPYEGGVLF 188
+ F+ Y +F
Sbjct: 721 NPQQFIKTDYFYRTSTIF 738
>pdb|3II6|A Chain A, Structure Of Human Xrcc4 In Complex With The Tandem Brct
Domains Of Dna Ligaseiv.
pdb|3II6|B Chain B, Structure Of Human Xrcc4 In Complex With The Tandem Brct
Domains Of Dna Ligaseiv.
pdb|3II6|C Chain C, Structure Of Human Xrcc4 In Complex With The Tandem Brct
Domains Of Dna Ligaseiv.
pdb|3II6|D Chain D, Structure Of Human Xrcc4 In Complex With The Tandem Brct
Domains Of Dna Ligaseiv
Length = 203
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 36 RPVRCRLGNFSSYKVSRFCRKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQ 88
+ V RLG+F+ KV RELIC DT E + N+ H +EN+
Sbjct: 102 KDVSFRLGSFNLEKVENPAEVIRELICYCLDTTAENQAKNE-----HLQKENE 149
>pdb|3Q4F|C Chain C, Crystal Structure Of Xrcc4XLF-Cernunnos Complex
pdb|3Q4F|D Chain D, Crystal Structure Of Xrcc4XLF-Cernunnos Complex
pdb|3Q4F|G Chain G, Crystal Structure Of Xrcc4XLF-Cernunnos Complex
pdb|3Q4F|H Chain H, Crystal Structure Of Xrcc4XLF-Cernunnos Complex
Length = 186
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 36 RPVRCRLGNFSSYKVSRFCRKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQ 88
+ V RLG+F+ KV RELIC DT E + N+ H +EN+
Sbjct: 131 KDVSFRLGSFNLEKVENPAEVIRELICYCLDTIAENQAKNE-----HLQKENE 178
>pdb|3W03|C Chain C, Xlf-Xrcc4 Complex
pdb|3W03|D Chain D, Xlf-Xrcc4 Complex
Length = 184
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 36 RPVRCRLGNFSSYKVSRFCRKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQ 88
+ V RLG+F+ KV RELIC DT E + N+ H +EN+
Sbjct: 122 KDVSFRLGSFNLEKVENPAEVIRELICYCLDTIAENQAKNE-----HLQKENE 169
>pdb|3RWR|A Chain A, Crystal Structure Of The Human Xrcc4-Xlf Complex
pdb|3RWR|B Chain B, Crystal Structure Of The Human Xrcc4-Xlf Complex
pdb|3RWR|F Chain F, Crystal Structure Of The Human Xrcc4-Xlf Complex
pdb|3RWR|G Chain G, Crystal Structure Of The Human Xrcc4-Xlf Complex
pdb|3RWR|J Chain J, Crystal Structure Of The Human Xrcc4-Xlf Complex
pdb|3RWR|K Chain K, Crystal Structure Of The Human Xrcc4-Xlf Complex
pdb|3RWR|N Chain N, Crystal Structure Of The Human Xrcc4-Xlf Complex
pdb|3RWR|P Chain P, Crystal Structure Of The Human Xrcc4-Xlf Complex
pdb|3RWR|R Chain R, Crystal Structure Of The Human Xrcc4-Xlf Complex
pdb|3RWR|V Chain V, Crystal Structure Of The Human Xrcc4-Xlf Complex
pdb|3RWR|U Chain U, Crystal Structure Of The Human Xrcc4-Xlf Complex
pdb|3RWR|Y Chain Y, Crystal Structure Of The Human Xrcc4-Xlf Complex
Length = 163
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 36 RPVRCRLGNFSSYKVSRFCRKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQ 88
+ V RLG+F+ KV RELIC DT E + N+ H +EN+
Sbjct: 102 KDVSFRLGSFNLEKVENPAEVIRELICYCLDTIAENQAKNE-----HLQKENE 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,840,814
Number of Sequences: 62578
Number of extensions: 512801
Number of successful extensions: 1013
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1004
Number of HSP's gapped (non-prelim): 12
length of query: 456
length of database: 14,973,337
effective HSP length: 102
effective length of query: 354
effective length of database: 8,590,381
effective search space: 3040994874
effective search space used: 3040994874
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)