BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012794
(456 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225450401|ref|XP_002278318.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic
[Vitis vinifera]
gi|296089875|emb|CBI39694.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/446 (79%), Positives = 382/446 (85%), Gaps = 16/446 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ DEKLAEGIKLYAI TTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS+ALT+
Sbjct: 328 VGDHDEKLAEGIKLYAIPTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSMALTN 387
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET
Sbjct: 388 SIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 447
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGKEGTAILMFTSSQRRTV+SLERDVGCKFEF+SPP +E+VLESSAEQVV
Sbjct: 448 FVHRSGRTGRAGKEGTAILMFTSSQRRTVKSLERDVGCKFEFISPPAIEEVLESSAEQVV 507
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATLNGVHPESVEFFTPTAQ+LIEEKGT ALAAALA LSGFS+PPS RSLI+HEQGWVTLQ
Sbjct: 508 ATLNGVHPESVEFFTPTAQKLIEEKGTGALAAALAHLSGFSQPPSFRSLISHEQGWVTLQ 567
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
LTRDS +SRGF+SARSV GFLSDVYPTAADE+GKI+++AD+RVQGAVFDLPEEIAKELLN
Sbjct: 568 LTRDSGYSRGFLSARSVTGFLSDVYPTAADELGKIYLVADERVQGAVFDLPEEIAKELLN 627
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSM 373
KQ+PPGNTISKITKLPALQDDGP+ D YGRFS+RDR S RGG+R
Sbjct: 628 KQMPPGNTISKITKLPALQDDGPAGDYYGRFSNRDRSS------------RGGSRERRGS 675
Query: 374 DRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLI---GGSRSSRSS 430
R S DD + RGGRSFRS NN SR +S+DDWLI +RSS S
Sbjct: 676 RISRGRGSSWGSDDDGGDDLNRRGGRSFRSNNN-WSRNLRTSEDDWLIGGRRSNRSSSSF 734
Query: 431 SRDSRSFGGACFNCGKSGHRASECPN 456
RSFGG+CF CG+SGHRASECPN
Sbjct: 735 GSRERSFGGSCFTCGRSGHRASECPN 760
>gi|224124522|ref|XP_002330044.1| predicted protein [Populus trichocarpa]
gi|222871469|gb|EEF08600.1| predicted protein [Populus trichocarpa]
Length = 775
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/443 (78%), Positives = 376/443 (84%), Gaps = 16/443 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+Q+EKLAEGIKLYA+S TA SKRTILSDL+TVYAKGGKTI+FTQTKRDADEVS+ALT+
Sbjct: 345 VGDQEEKLAEGIKLYALSATAASKRTILSDLVTVYAKGGKTIIFTQTKRDADEVSMALTN 404
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDLIIHYELPND ET
Sbjct: 405 TIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDAET 464
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD GCKFEFVSPP +E+VLESSAEQVV
Sbjct: 465 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDAGCKFEFVSPPAIEEVLESSAEQVV 524
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATL+GVHPESVEFFTPTAQ+LIEE+GT+ALAAALA LSGFS+PPSSRSLI+H QGW TLQ
Sbjct: 525 ATLSGVHPESVEFFTPTAQKLIEEQGTNALAAALAHLSGFSQPPSSRSLISHAQGWATLQ 584
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
LTRD +SRGF+SARSV GFLSDVYP AADE+GKIH+IAD+RVQGAVFDLPEEIAKELLN
Sbjct: 585 LTRDPTYSRGFLSARSVTGFLSDVYPAAADEVGKIHVIADERVQGAVFDLPEEIAKELLN 644
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSM 373
KQIPPGNTI+KITKLPALQDDGP D YGRFSSRDR G
Sbjct: 645 KQIPPGNTIAKITKLPALQDDGPPGDFYGRFSSRDR--------------PARGGPRGQR 690
Query: 374 DRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRD 433
R G D +DG + RGGRS S N S+ S SS DDWLIGG RSSR SRD
Sbjct: 691 GGFRSSRGRGSGRDSDDGGTYRRGGRS-NSNENSWSQMSRSSGDDWLIGGRRSSRPPSRD 749
Query: 434 SRSFGGACFNCGKSGHRASECPN 456
RSFGG+CFNCG+SGHRASECPN
Sbjct: 750 -RSFGGSCFNCGRSGHRASECPN 771
>gi|118489724|gb|ABK96663.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 481
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/443 (79%), Positives = 377/443 (85%), Gaps = 16/443 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+Q+EKLAEGIKLYA+S TA SKRTILSDL+TVYAKGGKTI+FTQTKRDADEVS+ALT+
Sbjct: 51 VGDQEEKLAEGIKLYALSATAASKRTILSDLVTVYAKGGKTIIFTQTKRDADEVSMALTN 110
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDLIIHYELPND ET
Sbjct: 111 TIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDAET 170
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD GCKFEFVSPP +E+VLESSAEQVV
Sbjct: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDAGCKFEFVSPPAIEEVLESSAEQVV 230
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATL+GVHPESVEFFTPTAQ+LIEE+GT+ALAAALA LSGFS+PPSSRSLI+HEQGW TLQ
Sbjct: 231 ATLSGVHPESVEFFTPTAQKLIEEQGTNALAAALAHLSGFSQPPSSRSLISHEQGWATLQ 290
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
LTRD +SRGF+SARSV GFLSDVYP AADE+GKIH+IAD+RVQGAVFDLPEEIAKELLN
Sbjct: 291 LTRDPTYSRGFLSARSVTGFLSDVYPAAADEVGKIHVIADERVQGAVFDLPEEIAKELLN 350
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSM 373
KQIPPGNTI+KITKLPALQDDGP D YGRFSSRDR G
Sbjct: 351 KQIPPGNTIAKITKLPALQDDGPPGDFYGRFSSRDR--------------PARGGPRGQR 396
Query: 374 DRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRD 433
R G D +DG + RGGRS S N S+ S SS DDWLIGG RSSR SRD
Sbjct: 397 GGFRSSRGRGSGRDSDDGGTYRRGGRS-NSNENSWSQMSRSSGDDWLIGGRRSSRPPSRD 455
Query: 434 SRSFGGACFNCGKSGHRASECPN 456
RSFGG+CFNCG+SGHRASECPN
Sbjct: 456 -RSFGGSCFNCGRSGHRASECPN 477
>gi|224124506|ref|XP_002330040.1| predicted protein [Populus trichocarpa]
gi|222871465|gb|EEF08596.1| predicted protein [Populus trichocarpa]
Length = 735
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/443 (80%), Positives = 384/443 (86%), Gaps = 15/443 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+++EKLAEGIKLYAISTTATSKRTILSDL+TVYAKG KTI+FT+TKRDADEVS+ALT
Sbjct: 308 VGDREEKLAEGIKLYAISTTATSKRTILSDLVTVYAKGEKTIIFTRTKRDADEVSMALTQ 367
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDLIIHYELPNDPET
Sbjct: 368 SIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPET 427
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGKEGTAILMFT+SQRRTVRSLERD GCKFEFVSPP +E++LESS EQVV
Sbjct: 428 FVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLERDAGCKFEFVSPPAIEELLESSTEQVV 487
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATLNGVHPESVEFFTPTAQ+LIEE+GT ALAAALA LSGFSRPPSSRSLI+HEQGW TLQ
Sbjct: 488 ATLNGVHPESVEFFTPTAQKLIEEQGTSALAAALAHLSGFSRPPSSRSLISHEQGWTTLQ 547
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
LTRD +SRGF+SARSV GFLSDVYP AADEIGKIH+IAD+RVQGAVFDLPEEIAKELLN
Sbjct: 548 LTRDPTYSRGFLSARSVTGFLSDVYPAAADEIGKIHLIADERVQGAVFDLPEEIAKELLN 607
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSM 373
KQ+PPGNTI KITKLPALQDDGP SD YGRFSSRDR +RGG G +G G
Sbjct: 608 KQLPPGNTIEKITKLPALQDDGPPSDFYGRFSSRDRPARGGPRGQRGGFRSSRGQGSGRY 667
Query: 374 DRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRD 433
SDDE ++ RGGRS + N R S S SS DDWL+GG RSSR SSRD
Sbjct: 668 ------------SDDEG--TNRRGGRSNSNENTR-SWMSRSSGDDWLVGGRRSSRPSSRD 712
Query: 434 SRSFGGACFNCGKSGHRASECPN 456
SRSFGG+CFNCG+SGHRASECPN
Sbjct: 713 SRSFGGSCFNCGRSGHRASECPN 735
>gi|356505715|ref|XP_003521635.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 771
Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/447 (78%), Positives = 386/447 (86%), Gaps = 9/447 (2%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+++EKLAEGIKLYAI+ TATSKRTILSDL+TVYAKGGKTIVFTQTKRDADEVSL+LT+
Sbjct: 322 VGDEEEKLAEGIKLYAIAATATSKRTILSDLVTVYAKGGKTIVFTQTKRDADEVSLSLTN 381
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
I SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET
Sbjct: 382 SIMSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 441
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGK+G AIL++TSSQRRTVRSLERDVGCKFEFVS P +E+VLESSAEQVV
Sbjct: 442 FVHRSGRTGRAGKQGNAILLYTSSQRRTVRSLERDVGCKFEFVSAPAMEEVLESSAEQVV 501
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATL GVHPESV+FFTPTAQRLIEE+GT ALAAALAQLSGFSRPPSSRSLI HEQGW+TLQ
Sbjct: 502 ATLGGVHPESVQFFTPTAQRLIEEQGTSALAAALAQLSGFSRPPSSRSLITHEQGWITLQ 561
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
LTRDS SR + SARS+ GFLSDVYP AADE+GKIH+IAD++VQGAVFDLPEEIAKELLN
Sbjct: 562 LTRDSD-SRRYFSARSITGFLSDVYPAAADEVGKIHLIADEKVQGAVFDLPEEIAKELLN 620
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSM 373
+ IPPGNT+SKITKLP+LQDDGP SD YGRFS RDR SR G + +RGG+ S
Sbjct: 621 RDIPPGNTVSKITKLPSLQDDGPPSDFYGRFSDRDRSSRRGSTSRGGFSSRGGS---ASR 677
Query: 374 DRRGFRSSRSWGSDDE-DGF---SSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRS 429
DRRGF+SSR W +D D F SS RGGR+F++GN+ SS DDWLIGG R S
Sbjct: 678 DRRGFKSSRGWDVEDSGDDFGDQSSRRGGRNFKTGNSWSRAAGKSSGDDWLIGGGRRSSR 737
Query: 430 SSRDSRSFGGACFNCGKSGHRASECPN 456
S R FGG CFNCG+SGHRAS+CPN
Sbjct: 738 PSSSDR-FGGTCFNCGESGHRASDCPN 763
>gi|356534927|ref|XP_003536002.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 736
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/445 (76%), Positives = 367/445 (82%), Gaps = 23/445 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG Q+EKLAEGIKLYA+ TATSKRT+LSDLITVYAKGGKTIVFTQTK+DADEVS+ALTS
Sbjct: 303 VGEQEEKLAEGIKLYALLATATSKRTVLSDLITVYAKGGKTIVFTQTKKDADEVSMALTS 362
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL+IHYELPND ET
Sbjct: 363 SIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAET 422
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGKEGTAILM+TSSQRRTVRSLERDVG KFEFVSPP VE++LESSAEQVV
Sbjct: 423 FVHRSGRTGRAGKEGTAILMYTSSQRRTVRSLERDVGSKFEFVSPPAVEEILESSAEQVV 482
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATLN VHPESVEFFT TAQ+L+EE+G ALAAALAQ+SGFS+PPS RSLINHEQGW TLQ
Sbjct: 483 ATLNRVHPESVEFFTATAQKLVEEQGARALAAALAQMSGFSQPPSCRSLINHEQGWTTLQ 542
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
LTRDS S + SARSV GFLSDVY AADE+GKIH+IAD+RVQGAVFDLPEEIAKELLN
Sbjct: 543 LTRDSDTSGRYFSARSVTGFLSDVYSQAADEVGKIHLIADERVQGAVFDLPEEIAKELLN 602
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSM 373
K +P GNTISKITKLP LQD+ P+SD YG+FS RDR + GS
Sbjct: 603 KDMPSGNTISKITKLPPLQDNEPASDFYGKFSDRDR-----------------SNPRGSR 645
Query: 374 DRRGFRSS--RSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSS 431
D+RGFRSS R G D D F RGGRSFRSGNNR SS +DWLIGGS S S
Sbjct: 646 DQRGFRSSRGREGGQDSNDEF--GRGGRSFRSGNNRSRTTGKSSGNDWLIGGSSRSSRFS 703
Query: 432 RDSRS--FGGACFNCGKSGHRASEC 454
+R GGACFNCGK GHRAS+C
Sbjct: 704 SSNRDGGHGGACFNCGKPGHRASDC 728
>gi|357511641|ref|XP_003626109.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|87240993|gb|ABD32851.1| Helicase, C-terminal; Zinc finger, CCHC-type; GUCT [Medicago
truncatula]
gi|355501124|gb|AES82327.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 753
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/447 (78%), Positives = 381/447 (85%), Gaps = 21/447 (4%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+++EKLAEGIKLYAIS T+TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT+
Sbjct: 318 VGDEEEKLAEGIKLYAISATSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTN 377
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
I SEALHGDISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDLIIHYELPNDPET
Sbjct: 378 SITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPET 437
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGK GTAILMFT SQRRTVRSLERDVGCKFEFV+ P VEDVLESSAEQVV
Sbjct: 438 FVHRSGRTGRAGKLGTAILMFTGSQRRTVRSLERDVGCKFEFVNAPSVEDVLESSAEQVV 497
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
TLNGVHPES+ FFTPTAQ+LIEEKGT ALAAALAQ+SGFS+PPSSRSLI HEQGWVTLQ
Sbjct: 498 VTLNGVHPESIAFFTPTAQKLIEEKGTTALAAALAQMSGFSQPPSSRSLITHEQGWVTLQ 557
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
LTRDS S+ + SARSV GFLSDVY AADE+GK+H+IAD+RVQGAVFDLPE+IAKELL+
Sbjct: 558 LTRDSENSQRYFSARSVTGFLSDVYSKAADEVGKVHLIADERVQGAVFDLPEDIAKELLD 617
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSM 373
K IP GNTISK+TKLP LQDDGP SD YG+FS R+R +R GGSR RG
Sbjct: 618 KDIPAGNTISKVTKLPPLQDDGPPSDFYGKFSDRERNNRRGGSRDGRGFR---------- 667
Query: 374 DRRGFRSSRSW----GSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRS 429
SSR W GSDD+ G SS RGGRS++SGN+ S+ SS DDWLIGG +SSRS
Sbjct: 668 ------SSRGWDGGRGSDDDFGDSSRRGGRSYKSGNS-WSKPERSSRDDWLIGGRQSSRS 720
Query: 430 SSRDSRSFGGACFNCGKSGHRASECPN 456
SS +RSF G CF CG+SGHRAS+CPN
Sbjct: 721 SSSPNRSFAGTCFTCGESGHRASDCPN 747
>gi|255543078|ref|XP_002512602.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223548563|gb|EEF50054.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 772
Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust.
Identities = 344/460 (74%), Positives = 376/460 (81%), Gaps = 38/460 (8%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+Q+EKLAEGIKLYAIST ATSKR+ILSDL+TVYAKGGKTI+FTQTKRDADEVS+ LT+
Sbjct: 330 VGDQEEKLAEGIKLYAISTNATSKRSILSDLVTVYAKGGKTIIFTQTKRDADEVSMVLTN 389
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPET
Sbjct: 390 SIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPET 449
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGKEGTA+LMFTSSQRRTV+SLERDVGC+FEFVSPP E+VLESSAEQV+
Sbjct: 450 FVHRSGRTGRAGKEGTAVLMFTSSQRRTVKSLERDVGCRFEFVSPPGTEEVLESSAEQVI 509
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATL+GVHPESV FFTPTAQRLIEE+GT ALAAALAQLSGFS+PPSSRSLI+HEQGW TLQ
Sbjct: 510 ATLSGVHPESVGFFTPTAQRLIEEQGTSALAAALAQLSGFSQPPSSRSLISHEQGWTTLQ 569
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
LTRD ++SRGF+SARSV GFLSDVY AADE+GKIHIIAD++VQGAVFDLPEEIAKELLN
Sbjct: 570 LTRDPSYSRGFLSARSVTGFLSDVYTAAADEVGKIHIIADEKVQGAVFDLPEEIAKELLN 629
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSM 373
KQ+PPGNTISKITKLP+LQDDGP SD YGRFSSRDR RGGG + G
Sbjct: 630 KQLPPGNTISKITKLPSLQDDGPPSDFYGRFSSRDRPPRGGGRGQRGSRSSQGWG----- 684
Query: 374 DRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSS------ 427
SDD+D + G FS SS DDWLIGG RSS
Sbjct: 685 -----GGRGGRNSDDDDD-----------TFRRGGRSFSRSSSDDWLIGGGRSSRPSPRG 728
Query: 428 RSSSRD-----------SRSFGGACFNCGKSGHRASECPN 456
RSS RD RSFGG+CFNCG+SGHRAS+CPN
Sbjct: 729 RSSPRDWSSPRDRSSPRDRSFGGSCFNCGRSGHRASDCPN 768
>gi|356574052|ref|XP_003555166.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 736
Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust.
Identities = 339/445 (76%), Positives = 369/445 (82%), Gaps = 25/445 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG Q+EKLAEGIKLYA+S TA+SKRT+LSDLITVYAKGGKTIVFTQTK+DADEVS+ALTS
Sbjct: 305 VGEQEEKLAEGIKLYALSATASSKRTVLSDLITVYAKGGKTIVFTQTKKDADEVSMALTS 364
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL+IHYELPND ET
Sbjct: 365 SIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAET 424
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGKEGTAILM+TSSQRRTVRSLERDVGCKFEFVSPP +E++LESSAEQVV
Sbjct: 425 FVHRSGRTGRAGKEGTAILMYTSSQRRTVRSLERDVGCKFEFVSPPAMEEILESSAEQVV 484
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATLN VHPESV+FF TAQ+L+EE+G ALAAALAQ+SGFS+PPS RSLINHEQGW TLQ
Sbjct: 485 ATLNRVHPESVDFFIATAQKLVEEQGARALAAALAQMSGFSQPPSCRSLINHEQGWTTLQ 544
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
LTRD S + SARSV GFLSDVY AADE+GKIH+IAD+RVQGAVFDLPEEIAKELL
Sbjct: 545 LTRDPDTSARYFSARSVTGFLSDVYSPAADEVGKIHLIADERVQGAVFDLPEEIAKELLT 604
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSM 373
K +P GNTISKITKLP LQDD P+SD YG+FS RDR +R GS
Sbjct: 605 KDLPSGNTISKITKLPPLQDDEPASDFYGKFSDRDRSNR-----------------RGSR 647
Query: 374 DRRGFRSSRSW--GSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSS 431
D+RGFRSSR W G D +D F +GGRSFRSGN R SS DDWLIGGS S S
Sbjct: 648 DQRGFRSSRGWEGGQDSDDEF--GQGGRSFRSGNK--FRMGKSSGDDWLIGGSSRSSRFS 703
Query: 432 RDSRS--FGGACFNCGKSGHRASEC 454
+RS GGACFNCGK GHRAS+C
Sbjct: 704 SSNRSGGHGGACFNCGKPGHRASDC 728
>gi|343172316|gb|AEL98862.1| DEAD-box ATP-dependent RNA helicase, partial [Silene latifolia]
Length = 782
Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust.
Identities = 334/460 (72%), Positives = 375/460 (81%), Gaps = 35/460 (7%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+++EKLAEGIKLYAIS+TA SKRT+LSD+ITVYAKGGKTIVFTQTKRDADEVSLAL++
Sbjct: 337 VGDREEKLAEGIKLYAISSTAASKRTMLSDVITVYAKGGKTIVFTQTKRDADEVSLALSN 396
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
I SEALHGDISQHQRERTLNGFRQGKF+VLVATDVA+RGLDIPNVDL++HYE+PNDPET
Sbjct: 397 SIPSEALHGDISQHQRERTLNGFRQGKFSVLVATDVASRGLDIPNVDLVVHYEMPNDPET 456
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGKEGTA+LM+TS+QRRTVRSLERDVGC F +V P VE+VL SSA+QVV
Sbjct: 457 FVHRSGRTGRAGKEGTALLMYTSNQRRTVRSLERDVGCHFGYVGAPSVEEVLVSSADQVV 516
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATL GVHPES++FFTPTAQ+L+EE+GT ALAAA+A LSGFS+PPS++SL++HEQGWVTLQ
Sbjct: 517 ATLRGVHPESIKFFTPTAQKLLEEQGTGALAAAIAHLSGFSQPPSAKSLLSHEQGWVTLQ 576
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
L+RDS FSRG+MSARSVMGFLSDVYPTAADE+GKI +IAD+RVQGAVFDLPEEIAKELL
Sbjct: 577 LSRDSVFSRGYMSARSVMGFLSDVYPTAADEVGKIQLIADERVQGAVFDLPEEIAKELLK 636
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSR---------DRFSRGGGSRFSRGGAR 364
K++PPGNT+SKI+KLPALQDD P SDNYGRFS R DR GGGSR SRG
Sbjct: 637 KELPPGNTLSKISKLPALQDDAPPSDNYGRFSGRGRGSRGGMSDRRGSGGGSRTSRGWG- 695
Query: 365 GGARGGGSMDRRGFRSSRSWGSDDEDGFSSS--RGGRSFRSGNNR--GSRFSTSSDDDWL 420
RS SD EDG S S RGGRS R NR S+SS DDWL
Sbjct: 696 -----------------RSQDSDFEDGGSDSFRRGGRSPRPSTNRWSSGSSSSSSGDDWL 738
Query: 421 I----GGSRSSRSSSRDSRSFGGACFNCGKSGHRASECPN 456
I SRSS R F GACFNCGKSGHRA+ECP
Sbjct: 739 IGGGRSSSRSSPMGGRRDGQFSGACFNCGKSGHRATECPT 778
>gi|449435589|ref|XP_004135577.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Cucumis sativus]
Length = 748
Score = 629 bits (1621), Expect = e-177, Method: Compositional matrix adjust.
Identities = 341/446 (76%), Positives = 379/446 (84%), Gaps = 24/446 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+QDEKLAEGIKL+AI TTATSK+TIL DL+TVYAKGGKTIVFTQTKRDADEVSLAL +
Sbjct: 323 VGDQDEKLAEGIKLHAILTTATSKQTILRDLVTVYAKGGKTIVFTQTKRDADEVSLALAN 382
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
I SEALHGDISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPET
Sbjct: 383 SITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPET 442
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGKEGTAILMFT+SQRRTVRSLERDVGCKFEF +PP +E+VL+SSAEQVV
Sbjct: 443 FVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLERDVGCKFEFANPPGMEEVLKSSAEQVV 502
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
TL GVHPES+E+FTPTAQ+LI+E+G ALAAALAQLSGF+ PPSSRSLINHEQGWVTLQ
Sbjct: 503 VTLRGVHPESIEYFTPTAQKLIDEQGLGALAAALAQLSGFTHPPSSRSLINHEQGWVTLQ 562
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
LTRD ++SRGF+SARSV GFLSDVY AADEIGKIH+IAD+R+ GAVFDLPEEIAKELLN
Sbjct: 563 LTRDPSYSRGFLSARSVTGFLSDVYSPAADEIGKIHLIADERINGAVFDLPEEIAKELLN 622
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSM 373
K++P GNTI KITKLP LQDDGP SDNYGRFS R+R + S
Sbjct: 623 KELPEGNTILKITKLPPLQDDGPPSDNYGRFSGRER-----------------SSRNSSR 665
Query: 374 DRRGFRSSRSWGS---DDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSS 430
DRRG ++SR WGS D++G SR RSFR+ N++G F SS DDWLIGG RSSRSS
Sbjct: 666 DRRGLKTSRGWGSSRDSDDNGDIFSR-NRSFRTNNSKGRNFR-SSGDDWLIGGRRSSRSS 723
Query: 431 SRDSRSFGGACFNCGKSGHRASECPN 456
S D FGG+CFNCG+ GHRASECP+
Sbjct: 724 SVD--RFGGSCFNCGRMGHRASECPD 747
>gi|343172314|gb|AEL98861.1| DEAD-box ATP-dependent RNA helicase, partial [Silene latifolia]
Length = 782
Score = 622 bits (1604), Expect = e-175, Method: Compositional matrix adjust.
Identities = 334/460 (72%), Positives = 375/460 (81%), Gaps = 35/460 (7%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+++EKLAEGIKLYAIS+TA SKRT+LSD+ITVYAKGGKTIVFTQTKRDADEVSLAL++
Sbjct: 337 VGDREEKLAEGIKLYAISSTAASKRTMLSDVITVYAKGGKTIVFTQTKRDADEVSLALSN 396
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
I SEALHGDISQHQRERTLNGFRQGKF+VLVATDVA+RGLDIPNVDL++HYE+PNDPET
Sbjct: 397 SIPSEALHGDISQHQRERTLNGFRQGKFSVLVATDVASRGLDIPNVDLVVHYEMPNDPET 456
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGKEGTA+LM+TS+QRRTVRSLERDVGC FE+V P VE+VLESSA+QVV
Sbjct: 457 FVHRSGRTGRAGKEGTALLMYTSNQRRTVRSLERDVGCHFEYVGAPSVEEVLESSADQVV 516
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATL GVHP+S++FFTPTAQ+L+EE+GT ALAAA+A LSGFS+PPS++SL++HEQGWVTLQ
Sbjct: 517 ATLRGVHPDSIKFFTPTAQKLLEEQGTGALAAAIAHLSGFSQPPSAKSLLSHEQGWVTLQ 576
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
L+RDS FSRG+MSARSVMGFLSDVYPTAADE+GKI +IAD+RVQGAVFDLPEEIAKELL
Sbjct: 577 LSRDSVFSRGYMSARSVMGFLSDVYPTAADEVGKIQLIADERVQGAVFDLPEEIAKELLK 636
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSR---------DRFSRGGGSRFSRGGAR 364
K++PPGNT+SKI+KLPALQDD P SDNYGRFS R DR GGGSR SRG
Sbjct: 637 KELPPGNTLSKISKLPALQDDAPPSDNYGRFSGRGRGSRGGMSDRRGSGGGSRTSRGWG- 695
Query: 365 GGARGGGSMDRRGFRSSRSWGSDDEDGFSSS--RGGRSFRSGNN--RGSRFSTSSDDDWL 420
RS SD EDG S S RGGRS R N S SS DDWL
Sbjct: 696 -----------------RSQDSDFEDGGSDSFRRGGRSPRPSTNRWSSGSSSRSSGDDWL 738
Query: 421 I----GGSRSSRSSSRDSRSFGGACFNCGKSGHRASECPN 456
I SRSS R F GACFNCGKSGHRA+ECP
Sbjct: 739 IGGGRSSSRSSPMGGRRDGQFSGACFNCGKSGHRATECPT 778
>gi|356572874|ref|XP_003554590.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 771
Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust.
Identities = 342/448 (76%), Positives = 373/448 (83%), Gaps = 9/448 (2%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+++EKLAEGIKLYAI+ TATSKRTILSDL+TVYAKGGKTIVFTQTKRDADEVSL+LT+
Sbjct: 321 VGDEEEKLAEGIKLYAIAATATSKRTILSDLVTVYAKGGKTIVFTQTKRDADEVSLSLTN 380
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
I SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET
Sbjct: 381 SIMSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 440
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGK+G AIL++TSSQRRTVRSLERDVGCKFEFVS P +E+VLE+SAEQVV
Sbjct: 441 FVHRSGRTGRAGKQGNAILLYTSSQRRTVRSLERDVGCKFEFVSSPAMEEVLEASAEQVV 500
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATL GVHPESV+FFTPTAQ+LIEE+GT ALAAALAQLSGFSRPPSSRSLI HEQGW+TLQ
Sbjct: 501 ATLCGVHPESVQFFTPTAQKLIEEQGTSALAAALAQLSGFSRPPSSRSLITHEQGWITLQ 560
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
LTRDS SR + SARSV GFLSDVY AADE+GKIH+IAD+RVQGAVFDLPEEIAKELLN
Sbjct: 561 LTRDSD-SRRYFSARSVTGFLSDVYSAAADEVGKIHLIADERVQGAVFDLPEEIAKELLN 619
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSM 373
+ IPPGNTISKITKLP LQDDGP SD YG DR + G G S
Sbjct: 620 RDIPPGNTISKITKLPPLQDDGPPSDFYG--RFSDRDRSSRRGSSTSRGGFSSRGGSSSR 677
Query: 374 DRRGFRSSRSWGSDDEDGFSSS-----RGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSR 428
DRRGF+SSR W +D D RGGR+F++GN+ SS DDWLIGGSR S
Sbjct: 678 DRRGFKSSRGWDGEDSDDDDFGDRSSWRGGRNFKTGNSWSRAAGRSSGDDWLIGGSRRSS 737
Query: 429 SSSRDSRSFGGACFNCGKSGHRASECPN 456
S S FGGACFNCG+SGHRAS+CPN
Sbjct: 738 RPSS-SDRFGGACFNCGESGHRASDCPN 764
>gi|147828502|emb|CAN77581.1| hypothetical protein VITISV_015347 [Vitis vinifera]
Length = 786
Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust.
Identities = 332/433 (76%), Positives = 356/433 (82%), Gaps = 37/433 (8%)
Query: 13 QVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT---------------VYAKGGKTIVF 57
VG+ DEKLAEGIKLYAI TTATSKRTILSDLIT VYAKGGKTIVF
Sbjct: 350 HVGDHDEKLAEGIKLYAIPTTATSKRTILSDLITKNIVKDRGGFQYGHKVYAKGGKTIVF 409
Query: 58 TQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 117
TQTKRDADEVS+ALT+ IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP
Sbjct: 410 TQTKRDADEVSMALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 469
Query: 118 NVDL---------IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 168
NVDL IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV+SLERD
Sbjct: 470 NVDLKYVDLLFLQIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVKSLERD 529
Query: 169 VGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALA 228
VGCKFEF+SPP +E+VLESSAEQVVATLNGVHPESVEFFTPTAQ+LIEEKGT ALAAALA
Sbjct: 530 VGCKFEFISPPAIEEVLESSAEQVVATLNGVHPESVEFFTPTAQKLIEEKGTGALAAALA 589
Query: 229 QLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKI 288
LSGFS+PPS RSLI+HEQGWVTLQLTRDS +SRGF+SARSV GFLSDVYPTAADE+GKI
Sbjct: 590 HLSGFSQPPSFRSLISHEQGWVTLQLTRDSGYSRGFLSARSVTGFLSDVYPTAADELGKI 649
Query: 289 HIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRD 348
+++AD+RVQGAVFDLPEEIAKELLNKQ+PPGNTISKITKLPALQDDGP+ D YGRFS+RD
Sbjct: 650 YLVADERVQGAVFDLPEEIAKELLNKQMPPGNTISKITKLPALQDDGPAGDYYGRFSNRD 709
Query: 349 RFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNNRG 408
R SRGG +R R S DD + RGGRSFRS NN
Sbjct: 710 RSSRGG------------SRERRGSRISRGRGSSWGSDDDGGDDLNRRGGRSFRSNNN-W 756
Query: 409 SRFSTSSDDDWLI 421
SR +S+DDWLI
Sbjct: 757 SRNLRTSEDDWLI 769
>gi|3775987|emb|CAA09196.1| RNA helicase [Arabidopsis thaliana]
Length = 748
Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust.
Identities = 333/444 (75%), Positives = 372/444 (83%), Gaps = 14/444 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+QDEKLAEGIKLYAI+TT+TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL++
Sbjct: 314 VGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSN 373
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
IA+EALHGDISQHQRERTLN FRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPET
Sbjct: 374 SIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPET 433
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGKEG+AILM TSSQ+RTVRSLERDVGC FEF+SPP V D+LESSA+QVV
Sbjct: 434 FVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVV 493
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATLNGVHP+S++FF+ TAQ+L EEKGTDALAAALA LSGFS+PPSSRSL++HE+GWVTLQ
Sbjct: 494 ATLNGVHPDSIKFFSATAQKLYEEKGTDALAAALAHLSGFSQPPSSRSLLSHEKGWVTLQ 553
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
L RD +RGF+SARSV GFLSD+Y TAADE+GKI +IADDR+QGAVFDLPEEIAKELL
Sbjct: 554 LIRDPTNARGFLSARSVTGFLSDLYRTAADEVGKIFLIADDRIQGAVFDLPEEIAKELLE 613
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSM 373
K +P GN++S ITKLP LQDDGPSSDNYGRFSSRDR RGGG G RGG+
Sbjct: 614 KDVPEGNSLSMITKLPPLQDDGPSSDNYGRFSSRDRMPRGGGGSRGSRGGRGGSS----- 668
Query: 374 DRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGG-SRSSRSSSR 432
R SWG DD+ G SR S +RG S S DDWLIGG S SS +
Sbjct: 669 -----RGRDSWGGDDDRG---SRRSIGGGSSWSRGGSSSRGSSDDWLIGGRSSSSSRAPS 720
Query: 433 DSRSFGGACFNCGKSGHRASECPN 456
RSFGG+CF CGKSGHRA++CP+
Sbjct: 721 RERSFGGSCFICGKSGHRATDCPD 744
>gi|449517104|ref|XP_004165586.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like, partial [Cucumis sativus]
Length = 726
Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust.
Identities = 316/413 (76%), Positives = 350/413 (84%), Gaps = 22/413 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+QDEKLAEGIKL+AI TTATSK+TIL DL+TVYAKGGKTIVFTQTKRDADEVSLAL +
Sbjct: 323 VGDQDEKLAEGIKLHAILTTATSKQTILRDLVTVYAKGGKTIVFTQTKRDADEVSLALAN 382
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
I SEALHGDISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPET
Sbjct: 383 SITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPET 442
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGKEGTAILMFT+SQRRTVRSLERDVGCKFEF +PP +E+VL+SSAEQVV
Sbjct: 443 FVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLERDVGCKFEFANPPGMEEVLKSSAEQVV 502
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
TL GVHPES+E+FTPTAQ+LI+E+G ALAAALAQLSGF+ PPSSRSLINHEQGWVTLQ
Sbjct: 503 VTLRGVHPESIEYFTPTAQKLIDEQGLGALAAALAQLSGFTHPPSSRSLINHEQGWVTLQ 562
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
LTRD ++SRGF+SARSV GFLSDVY AADEIGKIH+IAD+R+ GAVFDLPEEIAKELLN
Sbjct: 563 LTRDPSYSRGFLSARSVTGFLSDVYSPAADEIGKIHLIADERINGAVFDLPEEIAKELLN 622
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSM 373
K++P GNTI KITKLP LQDDGP SDNYGRFS R + S
Sbjct: 623 KELPEGNTILKITKLPPLQDDGPPSDNYGRFS-----------------GRERSSRNSSR 665
Query: 374 DRRGFRSSRSWGS---DDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGG 423
DRRG ++SR WGS D++G SR RSFR+ N++G F SS DDWLIGG
Sbjct: 666 DRRGLKTSRGWGSSRDSDDNGDIFSR-NRSFRTNNSKGRNFR-SSGDDWLIGG 716
>gi|195612018|gb|ACG27839.1| nucleolar RNA helicase 2 [Zea mays]
Length = 744
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 311/464 (67%), Positives = 349/464 (75%), Gaps = 39/464 (8%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+QDEKLAEGIKLYAI TATSKRT+LSDLITVYAKGGKTIVFT+TK+DADEVSLALT+
Sbjct: 298 VGDQDEKLAEGIKLYAIPLTATSKRTVLSDLITVYAKGGKTIVFTRTKKDADEVSLALTN 357
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET
Sbjct: 358 SIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 417
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGK GTAILMFTSSQ+RTV+SLERDVGC FEF+SPP +E+VLESSAE V+
Sbjct: 418 FVHRSGRTGRAGKAGTAILMFTSSQKRTVKSLERDVGCNFEFISPPSIEEVLESSAEHVI 477
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATL GVHPES ++F A++L EE G ALA+ALA LSGFS+PPSSRSLI+HEQGWVTLQ
Sbjct: 478 ATLRGVHPESTKYFLGAAEKLTEELGPHALASALAHLSGFSQPPSSRSLISHEQGWVTLQ 537
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
LTR+ F RGF S RSV GFLSDV AADE+GKI++ AD+ VQGAVFDLPEEIAK+LL
Sbjct: 538 LTREQGFGRGFFSPRSVTGFLSDVCSAAADEVGKIYLTADENVQGAVFDLPEEIAKDLLT 597
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSM 373
++PPGNT++KI+KLPALQDDGP++D+YGRFS+ SR
Sbjct: 598 MELPPGNTLTKISKLPALQDDGPATDSYGRFSNDRGSRNNRRSRGGGASR---------- 647
Query: 374 DRRGFRSSRSWGSDDEDGFSSSRGGRSFR---------------------SGNNRGSRFS 412
W +D ED F RGGRS R S S S
Sbjct: 648 ------GRGGWDTDGEDRF--RRGGRSLRSDNDSWSDDDWSGGGRKSNRSSSFGSRSSSS 699
Query: 413 TSSDDDWLIGGSRSSRSSSRDSRSFGGACFNCGKSGHRASECPN 456
SS GG SS S +RSF GACFNCG+SGHRA++CPN
Sbjct: 700 YSSRGSPSFGGRSSSFGSRESNRSFSGACFNCGESGHRATDCPN 743
>gi|212274773|ref|NP_001130659.1| uncharacterized protein LOC100191761 [Zea mays]
gi|194689766|gb|ACF78967.1| unknown [Zea mays]
Length = 598
Score = 588 bits (1517), Expect = e-165, Method: Compositional matrix adjust.
Identities = 308/463 (66%), Positives = 347/463 (74%), Gaps = 38/463 (8%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+QDEKLAEGIKLYAI T TSKRT+LSDLITVYAKGGKTIVFT+TK+DADEVSLALT+
Sbjct: 153 VGDQDEKLAEGIKLYAIPLTTTSKRTVLSDLITVYAKGGKTIVFTRTKKDADEVSLALTN 212
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET
Sbjct: 213 SIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 272
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGK GTAILMFTSSQ+RTV+SLERDVGC FEF+SPP +E+VLESSAE V+
Sbjct: 273 FVHRSGRTGRAGKAGTAILMFTSSQKRTVKSLERDVGCNFEFISPPSIEEVLESSAEHVI 332
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATL GVHPES ++F A++L EE G ALA+ALA LSGFS+PPSSRSLI+HEQGWVTLQ
Sbjct: 333 ATLRGVHPESTKYFLGAAEKLTEELGPHALASALAHLSGFSQPPSSRSLISHEQGWVTLQ 392
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
LTR+ F RGF S RSV GFLSDV AADE+GKI++ AD+ VQGAVFDLPEEIAK+LL
Sbjct: 393 LTREQGFGRGFFSPRSVTGFLSDVCSAAADEVGKIYLTADENVQGAVFDLPEEIAKDLLT 452
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSM 373
++PPGNT++KI+KLPALQDDGP++D+YGRFS+ SR
Sbjct: 453 MELPPGNTLTKISKLPALQDDGPATDSYGRFSNDRGSRNNRRSRGGGASR---------- 502
Query: 374 DRRGFRSSRSWGSDDEDGFSSSRGGRSFR--------------------SGNNRGSRFST 413
W +D ED F RGGRS R S + S
Sbjct: 503 ------GRGGWDTDGEDRF--RRGGRSLRSDNDSWSDDDWSGGGRKSNRSSSFGSRSSSY 554
Query: 414 SSDDDWLIGGSRSSRSSSRDSRSFGGACFNCGKSGHRASECPN 456
SS GG SS +RSF GACFNCG+SGHRA++CPN
Sbjct: 555 SSRGSPSFGGRSSSFGGRESNRSFSGACFNCGESGHRATDCPN 597
>gi|47827092|dbj|BAD21122.1| ATP-dependent RNA helicase [Hordeum vulgare subsp. vulgare]
gi|326532610|dbj|BAK05234.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 764
Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust.
Identities = 314/484 (64%), Positives = 358/484 (73%), Gaps = 62/484 (12%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+QDEKLAEGIKL+AI T TSKRTILSDLITVYAKGGKTIVFT+TKRDADEVSLALT+
Sbjct: 301 VGDQDEKLAEGIKLFAIPLTTTSKRTILSDLITVYAKGGKTIVFTRTKRDADEVSLALTT 360
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDLIIHYELPNDPET
Sbjct: 361 SIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPET 420
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGK G AILMFT++QRRTV+SLERDVGCKFEF+ PP +E+VL+SSAE V+
Sbjct: 421 FVHRSGRTGRAGKAGNAILMFTTNQRRTVKSLERDVGCKFEFIGPPTMEEVLDSSAEHVI 480
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATL GVHPES+++F P A+RL +E G ALA+ALA LSGFS+PPSSRSLI+HEQG VTLQ
Sbjct: 481 ATLRGVHPESIQYFVPAAERLSQELGPTALASALAHLSGFSQPPSSRSLISHEQGSVTLQ 540
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
LTRD ++RGF S RSV GFLSDV P+AAD +GKI++IAD+RVQGAVFDLPEEIAK+LL
Sbjct: 541 LTRDPEYARGFFSPRSVTGFLSDVSPSAADAVGKIYLIADERVQGAVFDLPEEIAKDLLT 600
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSM 373
++PPGNT+SK+TKLP LQDDGP++D+YGRFS+ DR G+R
Sbjct: 601 MELPPGNTLSKVTKLPVLQDDGPATDSYGRFSNSDR------------GSRNRRGSSRGG 648
Query: 374 DRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRD 433
G R W SD +GF RGGRS +N SDDD+ GG+R S SS
Sbjct: 649 MGGGSRGRGGWDSD--EGF--RRGGRSSSRPDN-----DIWSDDDFSGGGARRSNRSSSP 699
Query: 434 S-----------------------------------------RSFGGACFNCGKSGHRAS 452
S RSF GACF CG+SGHRAS
Sbjct: 700 SGGRSSYGGRGGSSSFGDRSSSFGERSSSYGGRGGSSFGSRDRSFSGACFTCGQSGHRAS 759
Query: 453 ECPN 456
+CPN
Sbjct: 760 DCPN 763
>gi|414873743|tpg|DAA52300.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 743
Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust.
Identities = 308/463 (66%), Positives = 347/463 (74%), Gaps = 38/463 (8%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+QDEKLAEGIKLYAI T TSKRT+LSDLITVYAKGGKTIVFT+TK+DADEVSLALT+
Sbjct: 298 VGDQDEKLAEGIKLYAIPLTTTSKRTVLSDLITVYAKGGKTIVFTRTKKDADEVSLALTN 357
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET
Sbjct: 358 SIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 417
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGK GTAILMFTSSQ+RTV+SLERDVGC FEF+SPP +E+VLESSAE V+
Sbjct: 418 FVHRSGRTGRAGKAGTAILMFTSSQKRTVKSLERDVGCNFEFISPPSIEEVLESSAEHVI 477
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATL GVHPES ++F A++L EE G ALA+ALA LSGFS+PPSSRSLI+HEQGWVTLQ
Sbjct: 478 ATLRGVHPESTKYFLGAAEKLTEELGPHALASALAHLSGFSQPPSSRSLISHEQGWVTLQ 537
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
LTR+ F RGF S RSV GFLSDV AADE+GKI++ AD+ VQGAVFDLPEEIAK+LL
Sbjct: 538 LTREQGFGRGFFSPRSVTGFLSDVCSAAADEVGKIYLTADENVQGAVFDLPEEIAKDLLT 597
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSM 373
++PPGNT++KI+KLPALQDDGP++D+YGRFS+ SR
Sbjct: 598 MELPPGNTLTKISKLPALQDDGPATDSYGRFSNDRGSRNNRRSRGGGASR---------- 647
Query: 374 DRRGFRSSRSWGSDDEDGFSSSRGGRSFR--------------------SGNNRGSRFST 413
W +D ED F RGGRS R S + S
Sbjct: 648 ------GRGGWDTDGEDRF--RRGGRSLRSDNDSWSDDDWSGGGRKSNRSSSFGSRSSSY 699
Query: 414 SSDDDWLIGGSRSSRSSSRDSRSFGGACFNCGKSGHRASECPN 456
SS GG SS +RSF GACFNCG+SGHRA++CPN
Sbjct: 700 SSRGSPSFGGRSSSFGGRESNRSFSGACFNCGESGHRATDCPN 742
>gi|357122984|ref|XP_003563193.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like isoform 2 [Brachypodium distachyon]
Length = 749
Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust.
Identities = 312/448 (69%), Positives = 355/448 (79%), Gaps = 8/448 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+QDEKLAEGIKLYAI T TSKRTILSDLITVYAKGGKTIVFT+TKRDADEVSLALT+
Sbjct: 304 VGDQDEKLAEGIKLYAIPLTVTSKRTILSDLITVYAKGGKTIVFTRTKRDADEVSLALTA 363
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDLIIHYELPNDPET
Sbjct: 364 SIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPET 423
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGK G AILMFT++QRRTV+SLERDVGC+FEF+ PP +E+VL+SSAE V+
Sbjct: 424 FVHRSGRTGRAGKAGNAILMFTNNQRRTVKSLERDVGCRFEFIGPPTMEEVLDSSAEHVI 483
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATL GVH ES+++F P A+RL EE G +ALA ALA LSGFS+PPSSRSLI+HEQG VTLQ
Sbjct: 484 ATLRGVHQESIQYFIPAAERLSEELGPNALATALAHLSGFSQPPSSRSLISHEQGSVTLQ 543
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
LTRD A++RGF S RSV GFLSDV P AADE+GKI++IAD+RVQGAVFDLPEEIAK LL+
Sbjct: 544 LTRDPAYARGFFSPRSVTGFLSDVSPAAADEVGKIYLIADERVQGAVFDLPEEIAKNLLS 603
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSM 373
++PPGNT++K+TKLPALQDDGP++D+YGRFS+ DR G RG RGG
Sbjct: 604 MELPPGNTLTKVTKLPALQDDGPATDSYGRFSNSDR-GSRSRRGSRASGPRG--RGGWDS 660
Query: 374 DRRGF-RSSRSWGSDD----EDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSR 428
D GF R RS+ D+ +D FS + S + S G SS
Sbjct: 661 DGEGFGRGGRSFKPDNDIWSDDDFSGGARRSNRSSSSRGRSSSYGGRGGSSSFGDRSSSF 720
Query: 429 SSSRDSRSFGGACFNCGKSGHRASECPN 456
SRSF GACF CG+SGHRAS+CPN
Sbjct: 721 GDRSSSRSFSGACFTCGQSGHRASDCPN 748
>gi|357122982|ref|XP_003563192.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like isoform 1 [Brachypodium distachyon]
Length = 769
Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust.
Identities = 320/490 (65%), Positives = 361/490 (73%), Gaps = 72/490 (14%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+QDEKLAEGIKLYAI T TSKRTILSDLITVYAKGGKTIVFT+TKRDADEVSLALT+
Sbjct: 304 VGDQDEKLAEGIKLYAIPLTVTSKRTILSDLITVYAKGGKTIVFTRTKRDADEVSLALTA 363
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDLIIHYELPNDPET
Sbjct: 364 SIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPET 423
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGK G AILMFT++QRRTV+SLERDVGC+FEF+ PP +E+VL+SSAE V+
Sbjct: 424 FVHRSGRTGRAGKAGNAILMFTNNQRRTVKSLERDVGCRFEFIGPPTMEEVLDSSAEHVI 483
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATL GVH ES+++F P A+RL EE G +ALA ALA LSGFS+PPSSRSLI+HEQG VTLQ
Sbjct: 484 ATLRGVHQESIQYFIPAAERLSEELGPNALATALAHLSGFSQPPSSRSLISHEQGSVTLQ 543
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
LTRD A++RGF S RSV GFLSDV P AADE+GKI++IAD+RVQGAVFDLPEEIAK LL+
Sbjct: 544 LTRDPAYARGFFSPRSVTGFLSDVSPAAADEVGKIYLIADERVQGAVFDLPEEIAKNLLS 603
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSM 373
++PPGNT++K+TKLPALQDDGP++D+YGRFS+ DR G RG RGG
Sbjct: 604 MELPPGNTLTKVTKLPALQDDGPATDSYGRFSNSDR-GSRSRRGSRASGPRG--RGG--- 657
Query: 374 DRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDW-------------- 419
W SD E GF RGGRSF+ N+ SDDD+
Sbjct: 658 ----------WDSDGE-GF--GRGGRSFKPDND------IWSDDDFSGGARRSNRSSSSR 698
Query: 420 -------------------------------LIGGSRSSRSSSRDS--RSFGGACFNCGK 446
G S RSSS S RSF GACF CG+
Sbjct: 699 GRSSSYGGRGGSSSFGDRSSSFGDRSSSYGGRGGSSFGDRSSSFGSRDRSFSGACFTCGQ 758
Query: 447 SGHRASECPN 456
SGHRAS+CPN
Sbjct: 759 SGHRASDCPN 768
>gi|413932546|gb|AFW67097.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 745
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 312/466 (66%), Positives = 351/466 (75%), Gaps = 42/466 (9%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+QDEKLAEGIKL+AI TATSKRTILSDLITVYAKGGKTIVFT+TK+DADEVSLALT+
Sbjct: 298 VGDQDEKLAEGIKLHAIPLTATSKRTILSDLITVYAKGGKTIVFTRTKKDADEVSLALTT 357
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET
Sbjct: 358 SIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 417
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGK GTAILMFTSSQ+RTV SLERDVGCKFEF+SPP +E+VLESSAE V+
Sbjct: 418 FVHRSGRTGRAGKAGTAILMFTSSQKRTVMSLERDVGCKFEFISPPSIEEVLESSAEHVI 477
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATL GVHPES ++F A++L EE G ALA+ALA LSGFS+PPSSRSLI++EQGWVTLQ
Sbjct: 478 ATLRGVHPESTQYFLGAAEKLTEELGPHALASALAHLSGFSQPPSSRSLISYEQGWVTLQ 537
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
LTR+ + RGF S RSV GFLSDV AADE+GKI+I AD+ VQGAVFDLPEEIAK+LL
Sbjct: 538 LTREPGYGRGFFSPRSVTGFLSDVCSAAADEVGKIYITADENVQGAVFDLPEEIAKDLLT 597
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSM 373
++PPGNT++KI+KLPALQDD P++D+YGRFS+
Sbjct: 598 MEVPPGNTLTKISKLPALQDDSPATDSYGRFSNDRGSRNRRSRGGGAS------------ 645
Query: 374 DRRGFRSSRSWGSDDEDGFSSSRGGRSFR-----------SGNNRGSRFSTSSDDDWLIG 422
R W +D ED + RGGRS R SG R S S+SS
Sbjct: 646 -----RGRGGWDTDSEDRY--RRGGRSLRSDNDSWSDDDWSGGGRKSNRSSSSFGGRSSS 698
Query: 423 -----------GSRSSRSSSRD-SRSFGGACFNCGKSGHRASECPN 456
G RSS R+ SRSF GACFNCG+SGHRAS+CPN
Sbjct: 699 YGSRGSPSPSFGVRSSSLGGRESSRSFSGACFNCGESGHRASDCPN 744
>gi|297812857|ref|XP_002874312.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
gi|297320149|gb|EFH50571.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
Length = 748
Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust.
Identities = 285/337 (84%), Positives = 315/337 (93%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+QDEKLAEGIKLYAI+TT+TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL++
Sbjct: 314 VGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSN 373
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
IA+EALHGDISQHQRERTLN FRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPET
Sbjct: 374 SIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPET 433
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGKEG+AILM TSSQ+RTVRSLERDVGC FEF+SPP V D+LESSA+QVV
Sbjct: 434 FVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVV 493
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATLN VHP+S++FF+ TAQ+L EEKGTDALAAALA LSGFS+PPSSRSL++HE+GWVTLQ
Sbjct: 494 ATLNAVHPDSIKFFSATAQKLYEEKGTDALAAALAHLSGFSQPPSSRSLLSHEKGWVTLQ 553
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
L RD +RGF+SARSV GFLSDVY TAADE+GKI +IADDRVQGAVFDLPEEIAKELL
Sbjct: 554 LIRDPTNARGFLSARSVTGFLSDVYRTAADEVGKIFLIADDRVQGAVFDLPEEIAKELLE 613
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRF 350
K++P GN++S ITKLP LQDDGPSSDNYGRFSSRDR
Sbjct: 614 KEVPEGNSLSMITKLPPLQDDGPSSDNYGRFSSRDRM 650
>gi|334187954|ref|NP_001190402.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
gi|332006183|gb|AED93566.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
Length = 655
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 284/337 (84%), Positives = 315/337 (93%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+QDEKLAEGIKLYAI+TT+TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL++
Sbjct: 221 VGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSN 280
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
IA+EALHGDISQHQRERTLN FRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPET
Sbjct: 281 SIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPET 340
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGKEG+AILM TSSQ+RTVRSLERDVGC FEF+SPP V D+LESSA+QVV
Sbjct: 341 FVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVV 400
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATLNGVHP+S++FF+ TAQ+L EEKGTDALAAALA LSGFS+PPSSRSL++HE+GWVTLQ
Sbjct: 401 ATLNGVHPDSIKFFSATAQKLYEEKGTDALAAALAHLSGFSQPPSSRSLLSHEKGWVTLQ 460
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
L RD +RGF+SARSV GFLSD+Y TAADE+GKI +IADDR+QGAVFDLPEEIAKELL
Sbjct: 461 LIRDPTNARGFLSARSVTGFLSDLYRTAADEVGKIFLIADDRIQGAVFDLPEEIAKELLE 520
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRF 350
K +P GN++S ITKLP LQDDGPSSDNYGRFSSRDR
Sbjct: 521 KDVPEGNSLSMITKLPPLQDDGPSSDNYGRFSSRDRM 557
>gi|79328737|ref|NP_001031943.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
gi|108861893|sp|Q8L7S8.2|RH3_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic;
AltName: Full=Protein EMBRYO DEFECTIVE 1138; Flags:
Precursor
gi|19347898|gb|AAL85971.1| unknown protein [Arabidopsis thaliana]
gi|20259537|gb|AAM13888.1| unknown protein [Arabidopsis thaliana]
gi|20453225|gb|AAM19851.1| At5g26752 [Arabidopsis thaliana]
gi|21689779|gb|AAM67533.1| unknown protein [Arabidopsis thaliana]
gi|23397145|gb|AAN31856.1| unknown protein [Arabidopsis thaliana]
gi|25090432|gb|AAN72300.1| At5g26752/At5g26752 [Arabidopsis thaliana]
gi|27311701|gb|AAO00816.1| Unknown protein [Arabidopsis thaliana]
gi|110739485|dbj|BAF01652.1| hypothetical protein [Arabidopsis thaliana]
gi|332006182|gb|AED93565.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
Length = 748
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 284/337 (84%), Positives = 315/337 (93%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+QDEKLAEGIKLYAI+TT+TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL++
Sbjct: 314 VGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSN 373
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
IA+EALHGDISQHQRERTLN FRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPET
Sbjct: 374 SIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPET 433
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGKEG+AILM TSSQ+RTVRSLERDVGC FEF+SPP V D+LESSA+QVV
Sbjct: 434 FVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVV 493
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATLNGVHP+S++FF+ TAQ+L EEKGTDALAAALA LSGFS+PPSSRSL++HE+GWVTLQ
Sbjct: 494 ATLNGVHPDSIKFFSATAQKLYEEKGTDALAAALAHLSGFSQPPSSRSLLSHEKGWVTLQ 553
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
L RD +RGF+SARSV GFLSD+Y TAADE+GKI +IADDR+QGAVFDLPEEIAKELL
Sbjct: 554 LIRDPTNARGFLSARSVTGFLSDLYRTAADEVGKIFLIADDRIQGAVFDLPEEIAKELLE 613
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRF 350
K +P GN++S ITKLP LQDDGPSSDNYGRFSSRDR
Sbjct: 614 KDVPEGNSLSMITKLPPLQDDGPSSDNYGRFSSRDRM 650
>gi|30690260|ref|NP_680225.2| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
gi|20856975|gb|AAM26693.1| At5g26743 [Arabidopsis thaliana]
gi|28416497|gb|AAO42779.1| At5g26743 [Arabidopsis thaliana]
gi|332006181|gb|AED93564.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
Length = 747
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 284/337 (84%), Positives = 315/337 (93%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+QDEKLAEGIKLYAI+TT+TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL++
Sbjct: 314 VGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSN 373
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
IA+EALHGDISQHQRERTLN FRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPET
Sbjct: 374 SIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPET 433
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGKEG+AILM TSSQ+RTVRSLERDVGC FEF+SPP V D+LESSA+QVV
Sbjct: 434 FVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVV 493
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATLNGVHP+S++FF+ TAQ+L EEKGTDALAAALA LSGFS+PPSSRSL++HE+GWVTLQ
Sbjct: 494 ATLNGVHPDSIKFFSATAQKLYEEKGTDALAAALAHLSGFSQPPSSRSLLSHEKGWVTLQ 553
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
L RD +RGF+SARSV GFLSD+Y TAADE+GKI +IADDR+QGAVFDLPEEIAKELL
Sbjct: 554 LIRDPTNARGFLSARSVTGFLSDLYRTAADEVGKIFLIADDRIQGAVFDLPEEIAKELLE 613
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRF 350
K +P GN++S ITKLP LQDDGPSSDNYGRFSSRDR
Sbjct: 614 KDVPEGNSLSMITKLPPLQDDGPSSDNYGRFSSRDRM 650
>gi|22135801|gb|AAM91087.1| At5g26740 [Arabidopsis thaliana]
Length = 748
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 283/337 (83%), Positives = 314/337 (93%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+QDEKLAEGIKLYAI+TT+TSKRTILSDLITVYAKGGK IVFTQTKRDADEVSLAL++
Sbjct: 314 VGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKNIVFTQTKRDADEVSLALSN 373
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
IA+EALHGDISQHQRERTLN FRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPET
Sbjct: 374 SIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPET 433
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGKEG+AILM TSSQ+RTVRSLERDVGC FEF+SPP V D+LESSA+QVV
Sbjct: 434 FVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVV 493
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATLNGVHP+S++FF+ TAQ+L EEKGTDALAAALA LSGFS+PPSSRSL++HE+GWVTLQ
Sbjct: 494 ATLNGVHPDSIKFFSATAQKLYEEKGTDALAAALAHLSGFSQPPSSRSLLSHEKGWVTLQ 553
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
L RD +RGF+SARSV GFLSD+Y TAADE+GKI +IADDR+QGAVFDLPEEIAKELL
Sbjct: 554 LIRDPTNARGFLSARSVTGFLSDLYRTAADEVGKIFLIADDRIQGAVFDLPEEIAKELLE 613
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRF 350
K +P GN++S ITKLP LQDDGPSSDNYGRFSSRDR
Sbjct: 614 KDVPEGNSLSMITKLPPLQDDGPSSDNYGRFSSRDRM 650
>gi|108711873|gb|ABF99668.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
Length = 596
Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust.
Identities = 273/335 (81%), Positives = 308/335 (91%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+QDEKLAEGIKLYAI T+TSKRT+LSDLITVYAKGGKTIVFT+TKRDADEVSLALT+
Sbjct: 153 VGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTN 212
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET
Sbjct: 213 SIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 272
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGK GTAILMFT+SQRRTVRSLERDVGC+F+F+SPP +EDVLESSAE V+
Sbjct: 273 FVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVI 332
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATL GVH ES+++F P A+RL EE G +ALA+ALA LSGFS+PPSSRSLI+HEQGWVTLQ
Sbjct: 333 ATLRGVHTESIQYFIPAAERLQEELGPNALASALAHLSGFSQPPSSRSLISHEQGWVTLQ 392
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
LTRD + RGF S RSV GFLSDV AADE+GKI + AD++VQGAVFDLPEEIA++LL+
Sbjct: 393 LTRDPGYGRGFFSPRSVTGFLSDVSSAAADEVGKIFLTADEKVQGAVFDLPEEIARDLLS 452
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRD 348
++PPGNTI+K+TKLPALQDDGP++D+YGRFS+ D
Sbjct: 453 MELPPGNTITKVTKLPALQDDGPATDSYGRFSNSD 487
>gi|108711872|gb|ABF99667.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
gi|215686855|dbj|BAG89705.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 597
Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust.
Identities = 273/335 (81%), Positives = 308/335 (91%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+QDEKLAEGIKLYAI T+TSKRT+LSDLITVYAKGGKTIVFT+TKRDADEVSLALT+
Sbjct: 153 VGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTN 212
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET
Sbjct: 213 SIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 272
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGK GTAILMFT+SQRRTVRSLERDVGC+F+F+SPP +EDVLESSAE V+
Sbjct: 273 FVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVI 332
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATL GVH ES+++F P A+RL EE G +ALA+ALA LSGFS+PPSSRSLI+HEQGWVTLQ
Sbjct: 333 ATLRGVHTESIQYFIPAAERLQEELGPNALASALAHLSGFSQPPSSRSLISHEQGWVTLQ 392
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
LTRD + RGF S RSV GFLSDV AADE+GKI + AD++VQGAVFDLPEEIA++LL+
Sbjct: 393 LTRDPGYGRGFFSPRSVTGFLSDVSSAAADEVGKIFLTADEKVQGAVFDLPEEIARDLLS 452
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRD 348
++PPGNTI+K+TKLPALQDDGP++D+YGRFS+ D
Sbjct: 453 MELPPGNTITKVTKLPALQDDGPATDSYGRFSNSD 487
>gi|143455890|sp|Q0DM51.2|RH3_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic;
Flags: Precursor
gi|18855061|gb|AAL79753.1|AC096687_17 putative RNA helicase [Oryza sativa Japonica Group]
Length = 758
Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust.
Identities = 273/335 (81%), Positives = 308/335 (91%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+QDEKLAEGIKLYAI T+TSKRT+LSDLITVYAKGGKTIVFT+TKRDADEVSLALT+
Sbjct: 314 VGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTN 373
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET
Sbjct: 374 SIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 433
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGK GTAILMFT+SQRRTVRSLERDVGC+F+F+SPP +EDVLESSAE V+
Sbjct: 434 FVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVI 493
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATL GVH ES+++F P A+RL EE G +ALA+ALA LSGFS+PPSSRSLI+HEQGWVTLQ
Sbjct: 494 ATLRGVHTESIQYFIPAAERLQEELGPNALASALAHLSGFSQPPSSRSLISHEQGWVTLQ 553
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
LTRD + RGF S RSV GFLSDV AADE+GKI + AD++VQGAVFDLPEEIA++LL+
Sbjct: 554 LTRDPGYGRGFFSPRSVTGFLSDVSSAAADEVGKIFLTADEKVQGAVFDLPEEIARDLLS 613
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRD 348
++PPGNTI+K+TKLPALQDDGP++D+YGRFS+ D
Sbjct: 614 MELPPGNTITKVTKLPALQDDGPATDSYGRFSNSD 648
>gi|218194025|gb|EEC76452.1| hypothetical protein OsI_14162 [Oryza sativa Indica Group]
Length = 779
Score = 569 bits (1467), Expect = e-159, Method: Compositional matrix adjust.
Identities = 273/335 (81%), Positives = 308/335 (91%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+QDEKLAEGIKLYAI T+TSKRT+LSDLITVYAKGGKTIVFT+TKRDADEVSLALT+
Sbjct: 335 VGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTN 394
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET
Sbjct: 395 SIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 454
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGK GTAILMFT+SQRRTVRSLERDVGC+F+F+SPP +EDVLESSAE V+
Sbjct: 455 FVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVI 514
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATL GVH ES+++F P A+RL EE G +ALA+ALA LSGFS+PPSSRSLI+HEQGWVTLQ
Sbjct: 515 ATLRGVHTESIQYFIPAAERLQEELGPNALASALAHLSGFSQPPSSRSLISHEQGWVTLQ 574
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
LTRD + RGF S RSV GFLSDV AADE+GKI + AD++VQGAVFDLPEEIA++LL+
Sbjct: 575 LTRDPGYGRGFFSPRSVTGFLSDVSSAAADEVGKIFLTADEKVQGAVFDLPEEIARDLLS 634
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRD 348
++PPGNTI+K+TKLPALQDDGP++D+YGRFS+ D
Sbjct: 635 MELPPGNTITKVTKLPALQDDGPATDSYGRFSNSD 669
>gi|115456345|ref|NP_001051773.1| Os03g0827700 [Oryza sativa Japonica Group]
gi|113550244|dbj|BAF13687.1| Os03g0827700, partial [Oryza sativa Japonica Group]
Length = 723
Score = 569 bits (1467), Expect = e-159, Method: Compositional matrix adjust.
Identities = 273/335 (81%), Positives = 308/335 (91%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+QDEKLAEGIKLYAI T+TSKRT+LSDLITVYAKGGKTIVFT+TKRDADEVSLALT+
Sbjct: 279 VGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTN 338
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET
Sbjct: 339 SIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 398
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGK GTAILMFT+SQRRTVRSLERDVGC+F+F+SPP +EDVLESSAE V+
Sbjct: 399 FVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVI 458
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
ATL GVH ES+++F P A+RL EE G +ALA+ALA LSGFS+PPSSRSLI+HEQGWVTLQ
Sbjct: 459 ATLRGVHTESIQYFIPAAERLQEELGPNALASALAHLSGFSQPPSSRSLISHEQGWVTLQ 518
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
LTRD + RGF S RSV GFLSDV AADE+GKI + AD++VQGAVFDLPEEIA++LL+
Sbjct: 519 LTRDPGYGRGFFSPRSVTGFLSDVSSAAADEVGKIFLTADEKVQGAVFDLPEEIARDLLS 578
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRD 348
++PPGNTI+K+TKLPALQDDGP++D+YGRFS+ D
Sbjct: 579 MELPPGNTITKVTKLPALQDDGPATDSYGRFSNSD 613
>gi|413932547|gb|AFW67098.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 449
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 289/450 (64%), Positives = 330/450 (73%), Gaps = 49/450 (10%)
Query: 37 KRTILSDL-------ITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQR 89
+R IL+ L + VYAKGGKTIVFT+TK+DADEVSLALT+ IASEALHGDISQHQR
Sbjct: 18 ERLILARLSGFGSLGLRVYAKGGKTIVFTRTKKDADEVSLALTTSIASEALHGDISQHQR 77
Query: 90 ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGT 149
ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK GT
Sbjct: 78 ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGT 137
Query: 150 AILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTP 209
AILMFTSSQ+RTV SLERDVGCKFEF+SPP +E+VLESSAE V+ATL GVHPES ++F
Sbjct: 138 AILMFTSSQKRTVMSLERDVGCKFEFISPPSIEEVLESSAEHVIATLRGVHPESTQYFLG 197
Query: 210 TAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARS 269
A++L EE G ALA+ALA LSGFS+PPSSRSLI++EQGWVTLQLTR+ + RGF S RS
Sbjct: 198 AAEKLTEELGPHALASALAHLSGFSQPPSSRSLISYEQGWVTLQLTREPGYGRGFFSPRS 257
Query: 270 VMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLP 329
V GFLSDV AADE+GKI+I AD+ VQGAVFDLPEEIAK+LL ++PPGNT++KI+KLP
Sbjct: 258 VTGFLSDVCSAAADEVGKIYITADENVQGAVFDLPEEIAKDLLTMEVPPGNTLTKISKLP 317
Query: 330 ALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDDE 389
ALQDD P++D+YGRFS+ +R S R W +D E
Sbjct: 318 ALQDDSPATDSYGRFSNDRG-----------------SRNRRSRGGGASRGRGGWDTDSE 360
Query: 390 DGFSSSRGGRSFR-----------SGNNRGSRFSTSSDDDWLIG-----------GSRSS 427
D + RGGRS R SG R S S+SS G RSS
Sbjct: 361 DRY--RRGGRSLRSDNDSWSDDDWSGGGRKSNRSSSSFGGRSSSYGSRGSPSPSFGVRSS 418
Query: 428 RSSSRD-SRSFGGACFNCGKSGHRASECPN 456
R+ SRSF GACFNCG+SGHRAS+CPN
Sbjct: 419 SLGGRESSRSFSGACFNCGESGHRASDCPN 448
>gi|148906285|gb|ABR16298.1| unknown [Picea sitchensis]
Length = 802
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 269/464 (57%), Positives = 327/464 (70%), Gaps = 41/464 (8%)
Query: 14 VGNQDEKLAEGIKLYAISTTATS--KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL 71
VG +EKLAEGIKLYA++TT +S KR+IL DLITV+AKGGKTIVFTQTKRDADE+SL L
Sbjct: 356 VGENEEKLAEGIKLYAVATTTSSNSKRSILGDLITVFAKGGKTIVFTQTKRDADEISLGL 415
Query: 72 TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 131
+S IA EALHGDISQHQRERTL GFR+GKF+ LVATDVAARGLDI NVDL+IHYE PNDP
Sbjct: 416 SSTIACEALHGDISQHQRERTLAGFREGKFSALVATDVAARGLDITNVDLVIHYEFPNDP 475
Query: 132 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 191
ETFVHRSGRTGRAGKEG AILM+ S+ +R VRSLE +VGC+FE+++PP EDVLE+S +
Sbjct: 476 ETFVHRSGRTGRAGKEGIAILMYPSNGKRKVRSLEHEVGCRFEYINPPRQEDVLETSTQH 535
Query: 192 VVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
V L VHPE + F PTA +L+EEKGT+ALAAALA+LSGFS+PPSSRSLI HE+GW T
Sbjct: 536 VAKALGSVHPELINIFLPTANKLMEEKGTNALAAALARLSGFSQPPSSRSLITHEEGWTT 595
Query: 252 LQLTRDSAFS--RGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAK 309
LQ+TR+S R ++AR +MG LS+++P AAD++GKI D + +GAVFDLP+++AK
Sbjct: 596 LQMTRESTMPDGRQQLNARELMGILSEMWPAAADKVGKIRTYGDGKAEGAVFDLPKDVAK 655
Query: 310 ELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARG 369
ELL KQ PG T+SKIT+LP ++D+ P SD GR+S R R S GG RG
Sbjct: 656 ELLLKQALPGYTVSKITQLPVMEDEEPPSDRRGRYSDRSASYR------SFGGGRG---- 705
Query: 370 GGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSR---------FSTSSDDDWL 420
R++ SWG D S G + RS + S FS S +
Sbjct: 706 ---------RNTNSWGKRSNDDGDWSGGWKPRRSYGEKSSSGMGRGSSRPFSMSDSNRRS 756
Query: 421 IGGSRSSR---------SSSRDSRSFGGACFNCGKSGHRASECP 455
G SS S S +RSF G+CF CG+SGHRAS+CP
Sbjct: 757 YGEKSSSGMGRGSSRPFSMSDSNRSFRGSCFVCGQSGHRASDCP 800
>gi|168019686|ref|XP_001762375.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686453|gb|EDQ72842.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 689
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 232/448 (51%), Positives = 295/448 (65%), Gaps = 27/448 (6%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ +EKLAEGIK+ A+ +KRT+L+DLI+V+ GKTIVFTQTKRDAD+V+ L
Sbjct: 259 VGDSNEKLAEGIKMLAVCIPPAAKRTVLNDLISVHGSVGKTIVFTQTKRDADDVASVLGR 318
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ EALHGDI+Q QRERTL FR+G+F+VLVATDVAARGLDIPNVDL++HYE+PNDPET
Sbjct: 319 TLGCEALHGDITQSQRERTLASFREGRFSVLVATDVAARGLDIPNVDLVVHYEIPNDPET 378
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGK+GTAILMF+ +Q+RT+R++E DVGCKF +SPP +E+VL++S++
Sbjct: 379 FVHRSGRTGRAGKDGTAILMFSENQKRTMRNIEMDVGCKFTLMSPPQMEEVLQASSKAAK 438
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
A + V+P+ F TA++L+E++G A AAALA LSGFS+ P+ RSLI HE+G +TL+
Sbjct: 439 AVIQRVNPDVANVFLSTAEKLLEKEGPGAFAAALAHLSGFSQLPAPRSLITHEEGLITLR 498
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
+ R R MSAR VMG L+D++ AAD +GKI II D ++QGAVFDLP+EIAKELL
Sbjct: 499 MVRTEELPRA-MSARMVMGVLADIWDAAADNVGKIRIIDDPKIQGAVFDLPQEIAKELLT 557
Query: 314 KQIPPGNTISKITKLPALQD-DGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGS 372
K + I I KLP L D DG + GR S DR+ R G S
Sbjct: 558 KPRREEDVIESIKKLPKLVDLDG----DRGRGS--DRYGRFGSRGGS------------G 599
Query: 373 MDRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSD------DDWLIGGSRS 426
M R R S D S+ G RS R + R S D D L S
Sbjct: 600 MRSSSPRGGRGGPSRGRDSGWSNDGDRSGRRSSERYQLLSLPPDLSKHYVDFLLFLSSLM 659
Query: 427 SRSSSRDSRSFGGACFNCGKSGHRASEC 454
+ S R S SF G CF C + GHRA++C
Sbjct: 660 AISHCRRS-SFAGVCFICNQPGHRAADC 686
>gi|168000763|ref|XP_001753085.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695784|gb|EDQ82126.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 638
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 234/447 (52%), Positives = 290/447 (64%), Gaps = 48/447 (10%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ D+KLAEGI AI AT+KR+ILSDLITV+AKGGKTIVFTQTKRDAD+V++A+ +
Sbjct: 236 VGDADDKLAEGITNLAIQLPATAKRSILSDLITVHAKGGKTIVFTQTKRDADDVAMAMGN 295
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
++A ALHGDISQ QRE+TLN FR+G TVLVATDVAARGLD+PNVDL+IHYE+PND ET
Sbjct: 296 LVACGALHGDISQLQREKTLNAFREGNITVLVATDVAARGLDVPNVDLVIHYEIPNDSET 355
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHR+GRTGRAGK GT ILMFT+ Q RT+R++E +V C+F+ + P V+DV+++S +QV
Sbjct: 356 FVHRTGRTGRAGKTGTNILMFTNQQMRTMRTIESNVKCRFQMIGAPHVKDVMQASFDQVR 415
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
L V F PTA+ L+EEKG DA AAALA LSGFS+ P SRSL+ HE G TL+
Sbjct: 416 GALKNVDESLAAEFRPTAESLLEEKGPDAFAAALAHLSGFSQLPPSRSLLTHEPGMTTLR 475
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
L R R ++AR V G LS + +AAD +GKI II D RV GAVFDLP+++AKE+L
Sbjct: 476 LMRSGG--RPALNARGVSGVLSGLSRSAADSVGKICIIDDRRVNGAVFDLPDDVAKEVLA 533
Query: 314 KQIPPGNTISKITKLPALQDD----GPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARG 369
G+ TKLP + + G SS +GRF GGGS SRGG
Sbjct: 534 LPNQDGDVFDVPTKLPPIISEERRGGQSSGMFGRF--------GGGSD-SRGG------- 577
Query: 370 GGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRS 429
MDR +D G SS RS S R RFS+ D GG
Sbjct: 578 ---MDR----------GNDRFGRFSSSSPRSSSSERERFGRFSSKQSDR---GG------ 615
Query: 430 SSRDSRSFGGACFNCGKSGHRASECPN 456
R+F G C CG+ GHRA++CP+
Sbjct: 616 ----DRTFSGTCHVCGQRGHRANDCPS 638
>gi|168000743|ref|XP_001753075.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695774|gb|EDQ82116.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 793
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/323 (61%), Positives = 247/323 (76%), Gaps = 6/323 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG DEKLA+ IKLYA++T +KR+IL+DLI VY KGGKTIVFTQTKRDAD+V+ A+
Sbjct: 349 VGESDEKLADRIKLYAVATVPQAKRSILNDLIAVYGKGGKTIVFTQTKRDADDVATAMAR 408
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ EALHGDISQ QRE+TLN FR+G F+VLVATDVAARGLDIPNVDL+IHYE+PNDPET
Sbjct: 409 TLGCEALHGDISQSQREKTLNAFREGNFSVLVATDVAARGLDIPNVDLVIHYEIPNDPET 468
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGK+GTAILM++ Q RT+R +ERDVGCKF +S P VEDVL++S E
Sbjct: 469 FVHRSGRTGRAGKDGTAILMYSDRQTRTMRLIERDVGCKFTKISAPRVEDVLKASTESAT 528
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
+ VHPE E F PTA+ L++E+G A AAALA L+GF++ P+SRSL+ HE+G TL+
Sbjct: 529 DVIKRVHPEVAEVFMPTAEELLKEQGPHAFAAALAHLAGFTQLPTSRSLLTHEEGVTTLR 588
Query: 254 LTRDSAFSRGF--MSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
L R RG M+ R VMG LSD++PTA D++GKI I+ D + GAVFDLPE++AKEL
Sbjct: 589 LVR----PRGSRPMTPRVVMGVLSDIWPTAVDKVGKIKIVDDQKADGAVFDLPEDVAKEL 644
Query: 312 LNKQIPPGNTISKITKLPALQDD 334
L+K G I LP L++D
Sbjct: 645 LSKPTRSGEVIDVCQSLPRLEED 667
>gi|222626093|gb|EEE60225.1| hypothetical protein OsJ_13207 [Oryza sativa Japonica Group]
Length = 697
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/266 (67%), Positives = 218/266 (81%), Gaps = 4/266 (1%)
Query: 83 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 142
D+ Q E+ G K + T + R + + ++ IIHYELPNDPETFVHRSGRTG
Sbjct: 326 DLVGDQDEKLAEGI---KLYAIPLTSTSKRTV-LSDLITIIHYELPNDPETFVHRSGRTG 381
Query: 143 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 202
RAGK GTAILMFT+SQRRTVRSLERDVGC+F+F+SPP +EDVLESSAE V+ATL GVH E
Sbjct: 382 RAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTE 441
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSR 262
S+++F P A+RL EE G +ALA+ALA LSGFS+PPSSRSLI+HEQGWVTLQLTRD + R
Sbjct: 442 SIQYFIPAAERLQEELGPNALASALAHLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGR 501
Query: 263 GFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTI 322
GF S RSV GFLSDV AADE+GKI + AD++VQGAVFDLPEEIA++LL+ ++PPGNTI
Sbjct: 502 GFFSPRSVTGFLSDVSSAAADEVGKIFLTADEKVQGAVFDLPEEIARDLLSMELPPGNTI 561
Query: 323 SKITKLPALQDDGPSSDNYGRFSSRD 348
+K+TKLPALQDDGP++D+YGRFS+ D
Sbjct: 562 TKVTKLPALQDDGPATDSYGRFSNSD 587
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 47
VG+QDEKLAEGIKLYAI T+TSKRT+LSDLIT+
Sbjct: 328 VGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITI 361
>gi|302821639|ref|XP_002992481.1| hypothetical protein SELMODRAFT_30997 [Selaginella moellendorffii]
gi|300139683|gb|EFJ06419.1| hypothetical protein SELMODRAFT_30997 [Selaginella moellendorffii]
Length = 641
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 188/330 (56%), Positives = 246/330 (74%), Gaps = 5/330 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG DEKLAEGIKLYA+ T+ +KR ILSD+ITVY KGGKTIVFTQTKRDA+EVS+A+
Sbjct: 231 VGESDEKLAEGIKLYAVQTSQAAKRKILSDVITVYGKGGKTIVFTQTKRDAEEVSMAMNR 290
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ EALHGDI+Q QRE+TL FR+G+F +LVATDVAARGLDI +VDLIIHY+LP D ET
Sbjct: 291 TLGCEALHGDIAQFQREKTLAAFREGRFLILVATDVAARGLDITDVDLIIHYDLPRDSET 350
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGK+G+A++ F+ +RR ++ ER VGC F+F S P ++VL +S+ Q V
Sbjct: 351 FVHRSGRTGRAGKDGSALVFFSPQERRILKHFERQVGCSFQFKSMPHFDEVLAASSSQAV 410
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
+ GVHP+ + F TA++L+EE GT A AAA+A +SGFS+PP RSLI+ E G++TL+
Sbjct: 411 ELIKGVHPDLKQVFMATAEKLLEEHGTAAFAAAIAHMSGFSQPPEQRSLISLEAGYMTLK 470
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
+R A ++ R V+G ++ + AAD IGK+ +I + V+GAVFDLPE IA +LL+
Sbjct: 471 FSR--APGNFPLAVRHVVGAIASLSEKAADNIGKVQMIDEKNVEGAVFDLPEHIATDLLS 528
Query: 314 KQIPPGNTISKITKLPALQDDGPSSDNYGR 343
K +P G I I +LP+LQD S D+ GR
Sbjct: 529 KSMPSGTRIEAIKELPSLQD---SWDDGGR 555
>gi|302788684|ref|XP_002976111.1| hypothetical protein SELMODRAFT_10661 [Selaginella moellendorffii]
gi|300156387|gb|EFJ23016.1| hypothetical protein SELMODRAFT_10661 [Selaginella moellendorffii]
Length = 597
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 174/326 (53%), Positives = 234/326 (71%), Gaps = 15/326 (4%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG ++K+AEGIKLYA+ST +K +L+DL+TVYAKGGK IVFT+TKRD D+V+ ++
Sbjct: 214 VGENEDKVAEGIKLYAVSTNDLAKNKLLADLLTVYAKGGKAIVFTKTKRDTDDVAAVMSR 273
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
I EALHGDISQ+QRE+TL+GFR G+F VLVATDVAARGLDIPNVDLI+HYE+P D ET
Sbjct: 274 SIGCEALHGDISQYQREKTLSGFRDGRFNVLVATDVAARGLDIPNVDLIVHYEVPGDSET 333
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGK+GT ILM+T +Q+R +R++E +VGCKFE + PP EDVL SS++
Sbjct: 334 FVHRSGRTGRAGKKGTCILMYTLNQKRVLRTIESEVGCKFEAIGPPAAEDVLASSSDHAS 393
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
++ VHP+ + F P AQ+L+EE+G +ALAAA+A +SG ++ P RSL+ +E+G++TLQ
Sbjct: 394 ESIKSVHPDLAKLFLPAAQKLLEEQGVNALAAAMAHVSGVTQLPPKRSLLTYEEGYMTLQ 453
Query: 254 LT-----RDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIA 308
LT SA S M S G +G++ +++ G VFDLPE++A
Sbjct: 454 LTGGNLIDSSAVSSAVMQLSSKAGM----------SMGRVTMLSSSTATGGVFDLPEDLA 503
Query: 309 KELLNKQIPPGNTISKITKLPALQDD 334
KE+L Q N ++ + LP LQ+D
Sbjct: 504 KEILALQNVGSNVLTAVKVLPDLQED 529
>gi|302769696|ref|XP_002968267.1| hypothetical protein SELMODRAFT_10677 [Selaginella moellendorffii]
gi|300163911|gb|EFJ30521.1| hypothetical protein SELMODRAFT_10677 [Selaginella moellendorffii]
Length = 614
Score = 358 bits (918), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 174/326 (53%), Positives = 234/326 (71%), Gaps = 15/326 (4%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG ++K+AEGIKLYA+ST +K +L+DL+TVYAKGGK IVFT+TKRD D+V+ ++
Sbjct: 214 VGENEDKVAEGIKLYAVSTNDLAKNKLLADLLTVYAKGGKAIVFTKTKRDTDDVAAVMSR 273
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
I EALHGDISQ+QRE+TL+GFR G+F VLVATDVAARGLDIPNVDLI+HYE+P D ET
Sbjct: 274 SIGCEALHGDISQYQREKTLSGFRDGRFNVLVATDVAARGLDIPNVDLIVHYEVPGDSET 333
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGK+GT ILM+T +Q+R +R++E +VGCKFE + PP EDVL SS++
Sbjct: 334 FVHRSGRTGRAGKKGTCILMYTLNQKRVLRTIESEVGCKFEAIGPPAAEDVLASSSDHAS 393
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
++ VHP+ + F P AQ+L+EE+G ALAAA+A +SG ++ P RSL+ +E+G++TLQ
Sbjct: 394 ESIKSVHPDLAKLFLPAAQKLLEEQGVTALAAAMAHVSGVTQLPPKRSLLTYEEGYMTLQ 453
Query: 254 LT-----RDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIA 308
LT SA S M S G +G++ +++ G VFDLPE++A
Sbjct: 454 LTGGNLIDSSAVSSAVMQLSSKAGM----------SMGRVTMLSSSTATGGVFDLPEDLA 503
Query: 309 KELLNKQIPPGNTISKITKLPALQDD 334
KE+L Q N ++ + +LP LQ+D
Sbjct: 504 KEILALQNVGSNVLTAVWQLPDLQED 529
>gi|302817066|ref|XP_002990210.1| hypothetical protein SELMODRAFT_30996 [Selaginella moellendorffii]
gi|300142065|gb|EFJ08770.1| hypothetical protein SELMODRAFT_30996 [Selaginella moellendorffii]
Length = 640
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 187/350 (53%), Positives = 247/350 (70%), Gaps = 25/350 (7%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG DEKLAEGIKLYA+ T+ +KR ILSD+ITVY KGGKTIVFTQTKRDA+EVS+A+
Sbjct: 213 VGESDEKLAEGIKLYAVQTSQAAKRKILSDVITVYGKGGKTIVFTQTKRDAEEVSMAMNR 272
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ EALHGDI+Q QRE+TL FR+G+F +LVATDVAARGLDI +VDLIIHY+LP D ET
Sbjct: 273 TLGCEALHGDIAQFQREKTLAAFREGRFLILVATDVAARGLDITDVDLIIHYDLPRDSET 332
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGK+G+A++ F+ +RR ++ ER VGC F+F S P ++VL +S+ Q V
Sbjct: 333 FVHRSGRTGRAGKDGSALVFFSPQERRILKHFERQVGCSFQFKSMPHFDEVLAASSSQAV 392
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
+ GVHP+ + F TA++L++E GT A AAA+A +SGFS+PP RSLI+ E G++TL+
Sbjct: 393 ELIKGVHPDLKQVFMATAEKLLDEHGTAAFAAAIAHMSGFSQPPEQRSLISLEAGYMTLK 452
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
+R A ++ R V+G ++ + AAD IGK+ +I + V+GAVFDLPE IA +LL+
Sbjct: 453 FSR--APGNFPLAVRHVVGAIASLSEKAADNIGKVQMIDEKNVEGAVFDLPEHIATDLLS 510
Query: 314 KQIPPGNTISKI--------------------TKLPALQDDGPSSDNYGR 343
K +P G I I ++LP+LQD S D+ GR
Sbjct: 511 KSMPSGTRIEAIKEVFLFLHSFDLSPTLHGSLSQLPSLQD---SWDDGGR 557
>gi|3047077|gb|AAC13590.1| contains similarity to the conserved C-terminal domain of helicases
(Pfam: helicase_C.hmm, score: 90.11), similar to
DEAD-box h, partial [Arabidopsis thaliana]
Length = 477
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 148/162 (91%), Positives = 158/162 (97%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+QDEKLAEGIKLYAI+TT+TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL++
Sbjct: 316 VGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSN 375
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
IA+EALHGDISQHQRERTLN FRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPET
Sbjct: 376 SIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPET 435
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 175
FVHRSGRTGRAGKEG+AILM TSSQ+RTVRSLERDVGC FEF
Sbjct: 436 FVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEF 477
>gi|357442015|ref|XP_003591285.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355480333|gb|AES61536.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 615
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 139/184 (75%), Positives = 166/184 (90%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+++EKLAEGIKLYA+S T+TSKR IL LI+ YA GGKTIVFT+TKRDADE+SL+LT+
Sbjct: 298 VGDREEKLAEGIKLYAVSATSTSKRRILYGLISAYANGGKTIVFTRTKRDADEISLSLTN 357
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
IAS+ LHGDISQ+QRE+TLNGFRQG+FTVLVATDVA+RGLDIPNVDLIIHYELP+ PET
Sbjct: 358 SIASKPLHGDISQYQREKTLNGFRQGRFTVLVATDVASRGLDIPNVDLIIHYELPDGPET 417
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGKEGTA++M+T+SQ+RTV S ER+VGC FEF+SPP ++D+ ESS QVV
Sbjct: 418 FVHRSGRTGRAGKEGTAVVMYTTSQKRTVISFEREVGCTFEFISPPPMQDLPESSTRQVV 477
Query: 194 ATLN 197
T +
Sbjct: 478 PTFD 481
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 36/53 (67%), Gaps = 8/53 (15%)
Query: 411 FSTSSDDDWLIGGSRSSRSSSRDSR-------SFGGACFNCGKSGHRASECPN 456
F T DDDWLIGG RSS SS + S+GGACF+CG+ GHRAS+CPN
Sbjct: 564 FKT-GDDDWLIGGRRSSGYSSSNRSSSPNRRGSYGGACFSCGQPGHRASDCPN 615
>gi|84468310|dbj|BAE71238.1| hypothetical protein [Trifolium pratense]
Length = 402
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 139/183 (75%), Positives = 163/183 (89%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+++EKLAEGIKLYA+ T+ SKR ILS LI+ Y KGGKTIVFT+TKRDADE+S +LTS
Sbjct: 95 VGDREEKLAEGIKLYAVPATSISKRRILSGLISAYGKGGKTIVFTRTKRDADEISYSLTS 154
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
IAS+ALHGDISQ+QRERTL+GFRQG+FTVLVATDVA+RGLDIPNVDLIIHYELP+ PET
Sbjct: 155 SIASKALHGDISQYQRERTLDGFRQGRFTVLVATDVASRGLDIPNVDLIIHYELPDGPET 214
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHRSGRTGRAGKEG A++MFT+SQ+RTV SLERDVG +FEF+ PP +ED+ E QVV
Sbjct: 215 FVHRSGRTGRAGKEGAAVVMFTASQKRTVISLERDVGSRFEFIRPPPMEDLPELPTRQVV 274
Query: 194 ATL 196
+TL
Sbjct: 275 STL 277
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 436 SFGGACFNCGKSGHRASECPN 456
++ G CFNCG+SGHRA +CPN
Sbjct: 377 NYRGPCFNCGQSGHRALDCPN 397
>gi|255077858|ref|XP_002502509.1| DEAD/DEAH box RNA helicase [Micromonas sp. RCC299]
gi|226517774|gb|ACO63767.1| DEAD/DEAH box RNA helicase [Micromonas sp. RCC299]
Length = 790
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 149/311 (47%), Positives = 209/311 (67%), Gaps = 19/311 (6%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+Q++K+A+ I + + + + TS+ TIL+DL+TVY KG K I FTQTKR+ADEV+ AL
Sbjct: 342 VGSQEQKVADTIDVMSCACSHTSRTTILADLVTVYGKGAKAICFTQTKREADEVTAALGR 401
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+A+E LHGDI+Q QRERTL FR G+F+VLVATDVAARGLDI +VDL++HYELP+D E+
Sbjct: 402 RMATEVLHGDIAQAQRERTLKRFRDGRFSVLVATDVAARGLDITDVDLVVHYELPHDTES 461
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHR GRTGRA K+G AI M+T ++ +RS+ R+ G KF ++PP +V+ SSAEQ
Sbjct: 462 FVHRCGRTGRANKKGAAIAMYTPREKSRIRSIVRETGVKFRVINPPTAAEVMTSSAEQAS 521
Query: 194 ATLNGVHPESVEFFTPTAQRL---IEEKGTD------ALAAALAQLSGFSRPPSSRSLIN 244
++ V E + +FTPTA+++ ++ G D LAAALA LSG + PP RS++
Sbjct: 522 IEIDLVDDELLPYFTPTAEKILAAVKNGGADGRSESEVLAAALAALSGHTEPPPPRSMLT 581
Query: 245 HEQGWVTLQLTRDSAFSRGFMS-ARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDL 303
+ G T+ +RG M R ++ +S+V AAD +G+I I+AD+ G FD+
Sbjct: 582 GDVGQTTM-------IARGNMILPRDLLRAMSEVSRAAADGVGRIRILADN--SGLCFDM 632
Query: 304 PEEIAKELLNK 314
E K LL +
Sbjct: 633 QHEQVKPLLEE 643
>gi|384244948|gb|EIE18444.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 674
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 142/305 (46%), Positives = 196/305 (64%), Gaps = 16/305 (5%)
Query: 17 QDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIA 76
Q K+ + IK A+ T ++R+IL DLITV+A GGK IVFTQTKR+ADEV+ +L+ +
Sbjct: 263 QSGKMPDAIKTMAVHVTQEARRSILVDLITVHALGGKCIVFTQTKREADEVAASLSLVHP 322
Query: 77 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 136
EALHGDISQ QRE+ L FR GKFT LVATDVAARGLDIP+VDL++HY+LP D E F+H
Sbjct: 323 CEALHGDISQAQREQVLKNFRNGKFTALVATDVAARGLDIPDVDLVVHYDLPRDTEAFLH 382
Query: 137 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK-FEFVSPPVVEDVLESSAEQVVAT 195
RSGRTGRAGK G+ I + R R + ++ K E++S P V+E+SA+QV+
Sbjct: 383 RSGRTGRAGKTGSTIAVVLPRDRSYFRRMCAEIKLKDVEYISSPSPSAVMEASAKQVLRR 442
Query: 196 LNGVHPESVEFFTPTAQRLIEEKGT--DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
L+ V + +EFF P A +L+ E+G DA+ ALA LSG P RSLI E G VT++
Sbjct: 443 LDNVDEKVIEFFAPAA-KLVLERGDKHDAMCRALAALSGLIEVPKPRSLITQEVGLVTMR 501
Query: 254 LT----RDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDR--VQGAVFDLPEEI 307
+ R + R+V+G +G++ ++ DDR ++GA FD+P+EI
Sbjct: 502 VMSRPGRITLPGHVMTIVRNVIG------ADGVTGLGRVRLLQDDRAGMEGAAFDVPQEI 555
Query: 308 AKELL 312
A +++
Sbjct: 556 ADKMM 560
>gi|224124518|ref|XP_002330043.1| predicted protein [Populus trichocarpa]
gi|222871468|gb|EEF08599.1| predicted protein [Populus trichocarpa]
Length = 402
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 147/221 (66%), Positives = 161/221 (72%), Gaps = 15/221 (6%)
Query: 213 RLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMG 272
+LIEE+GT+ALAAALA LSGFS+PPSSRSLI+H QGW TLQLTRD +SRGF+SARSV G
Sbjct: 124 KLIEEQGTNALAAALAHLSGFSQPPSSRSLISHAQGWATLQLTRDPTYSRGFLSARSVTG 183
Query: 273 FLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQ 332
FLSDVYP AADE+GKIH+IAD+RVQGAVFDLPEEIAKELLNKQIPPGNTI+KITKLPALQ
Sbjct: 184 FLSDVYPAAADEVGKIHVIADERVQGAVFDLPEEIAKELLNKQIPPGNTIAKITKLPALQ 243
Query: 333 DDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDDEDGF 392
DDGP D YGRFSSRDR G R G D +DG
Sbjct: 244 DDGPPGDFYGRFSSRDR--------------PARGGPRGQRGGFRSSRGRGSGRDSDDGG 289
Query: 393 SSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRD 433
+ RGGRS S N S+ S SS DDWLIGG RSSR SRD
Sbjct: 290 TYRRGGRS-NSNENSWSQMSRSSGDDWLIGGRRSSRPPSRD 329
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 97/110 (88%), Positives = 106/110 (96%)
Query: 12 TQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL 71
+ VG+Q+EKLAEGIKLYA+S TA SKRTILSDL+TVYAKGGKTI+FTQTKRDADEVS+AL
Sbjct: 14 SHVGDQEEKLAEGIKLYALSATAASKRTILSDLVTVYAKGGKTIIFTQTKRDADEVSMAL 73
Query: 72 TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 121
T+ IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDL
Sbjct: 74 TNTIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDL 123
>gi|303275259|ref|XP_003056927.1| DEAD/DEAH box RNA helicase [Micromonas pusilla CCMP1545]
gi|226461279|gb|EEH58572.1| DEAD/DEAH box RNA helicase [Micromonas pusilla CCMP1545]
Length = 803
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 146/332 (43%), Positives = 208/332 (62%), Gaps = 20/332 (6%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ +K+A+ I + + + + S+ IL+DL+TVY KG K I FTQTKR+ADEV+ AL
Sbjct: 351 VGDSKQKVADTIDILSCACSHQSRTMILADLVTVYGKGAKAICFTQTKREADEVTAALGR 410
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+A+E LHGDI+Q QRERTL FR +F+VLVATDVAARGLDI +VDL++H+ELPND E+
Sbjct: 411 RMATEVLHGDIAQAQRERTLKRFRDNRFSVLVATDVAARGLDITDVDLVVHFELPNDTES 470
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHR GRTGRA K GTAI MFT + +R++ R+ G F+ ++ P +V+ SSA Q
Sbjct: 471 FVHRCGRTGRANKRGTAIAMFTPRENYRLRTIVRETGVTFKSINAPTPAEVMTSSAVQAK 530
Query: 194 ATLNGVHPESVEFFTPTAQRLIEE---------KGTDALAAALAQLSGFSRPPSSRSLIN 244
++ V E + +FTPTA+ ++EE + LAAALA LSG + PP RSL+
Sbjct: 531 HEMSLVDDELLPYFTPTAEAILEEVRAAGGNGRSEAETLAAALAALSGHTEPPPPRSLLT 590
Query: 245 HEQGWVTLQLTRDSAFSRGFM-SARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDL 303
+ G T+ ++G M R ++ LS V AAD +G+I I+AD+ G FD+
Sbjct: 591 SDVGLTTM-------VAKGHMLLPRDLLRALSMVNRAAADGVGRIRILADN--SGLCFDM 641
Query: 304 PEEIAKELL-NKQIPPGNTISKITKLPALQDD 334
I +++ + + G +S LP L ++
Sbjct: 642 NHTIVNDVIASAEELEGMELSVCASLPELVEE 673
>gi|308804011|ref|XP_003079318.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
gi|116057773|emb|CAL53976.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
Length = 683
Score = 237 bits (604), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 141/322 (43%), Positives = 195/322 (60%), Gaps = 7/322 (2%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ +K+A+ I L + + TS+ +I+ DL+TVYAK K I FTQTKR ADE++ AL
Sbjct: 236 VGDNKQKVADTIDLMTCAVSQTSRTSIVMDLVTVYAKDKKCICFTQTKRAADELTAALGK 295
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
++ E LHGDI+Q QRERTL FR +FTVL+ATDVAARGLDI +VDL+IHYELPND E+
Sbjct: 296 RVSCEVLHGDIAQAQRERTLQRFRDNRFTVLIATDVAARGLDISDVDLVIHYELPNDVES 355
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHR GRTGRAG++G AI M+T + +R ++++ GC F + P +V+++ A
Sbjct: 356 FVHRCGRTGRAGQQGAAIAMYTDRESYMIRRIQKETGCDFRAIDIPSSTEVMDACAVTAS 415
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKG----TDALAAALAQLSGFSRPPSSRSLINHEQGW 249
L+ V E + FF PTA++L+ E T LAAALA +SG + P RSL+
Sbjct: 416 NALSKVDSELLPFFAPTAKKLLPEDAGEDITQILAAALAAISGQTEAPPPRSLLTGAPNS 475
Query: 250 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAK 309
T + DSA S + A ++ L+++ AD GKI +A+ G FD+
Sbjct: 476 CTYMVV-DSADSEPAIRAGDLLRALTEIDRKLADGCGKIRFLANK--NGLCFDIDAAYMS 532
Query: 310 ELLNKQIPPGNTISKITKLPAL 331
+L G +S TKLP L
Sbjct: 533 DLETVTDLNGFDLSVCTKLPDL 554
>gi|412988910|emb|CCO15501.1| predicted protein [Bathycoccus prasinos]
Length = 935
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 148/351 (42%), Positives = 199/351 (56%), Gaps = 31/351 (8%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG K+ + I L + S SK +L DL+TV+AKG KTIVFTQTKRDADEV+ +L
Sbjct: 443 VGEDTGKINKDIDLMSCSVAFPSKCAVLMDLVTVHAKGNKTIVFTQTKRDADEVTASLGK 502
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+++E LHGDI+Q QRERTL FRQ KF+VLVATDVAARGLD+ NVDL++HYELPN+ E+
Sbjct: 503 RVSTEVLHGDIAQAQRERTLQRFRQDKFSVLVATDVAARGLDVDNVDLVVHYELPNETES 562
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHR GRTGRAGK+GTAI + T + +R ++R G ++PP +V+ +SA
Sbjct: 563 FVHRCGRTGRAGKKGTAIALHTDREFYRLRDIKRFTGADIREINPPSSSEVMAASAATAE 622
Query: 194 ATLNGVHPESVEFFTP-----------------------------TAQRLIEEKGTDALA 224
++ V + +EFF P T+Q IE + + LA
Sbjct: 623 HRIHAVDEDVLEFFLPAAKDMIRNVQQKTTNDDEETETETEDETLTSQEEIERRAQELLA 682
Query: 225 AALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE 284
ALA LSG + P +SL+ G VT+ + D SAR ++ L D +
Sbjct: 683 RALAALSGHTEAPPPKSLLTGSPGQVTM-IVEDVNGDLPAFSARDLLATLGDKDRRLSSG 741
Query: 285 IGKIHIIADDR-VQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDD 334
+GKI A + GA FD+ E A+ELL+ G ++K T LP L D
Sbjct: 742 VGKITFFARNSGKNGAAFDVSYEFAQELLDMGTIAGFEVTKATVLPELARD 792
>gi|225446899|ref|XP_002284103.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Vitis
vinifera]
Length = 666
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 112/160 (70%), Positives = 129/160 (80%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ D+KLAEGI LY+I++ K +I+ LIT +AKGGK IVFTQTKRDAD ++ A+
Sbjct: 323 VGDSDQKLAEGISLYSIASEMYEKASIVGPLITEHAKGGKCIVFTQTKRDADRLAYAMAR 382
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
EALHGDISQ QRERTL+GFR G F VLVATDVAARGLDIPNVDLIIHYELPN E
Sbjct: 383 NFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPNVDLIIHYELPNSSEI 442
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
FVHRSGRTGRAGK+GTAIL++ Q RTVR +ERD+GCKF
Sbjct: 443 FVHRSGRTGRAGKKGTAILIYAEQQARTVRFIERDIGCKF 482
>gi|147770303|emb|CAN60235.1| hypothetical protein VITISV_028850 [Vitis vinifera]
Length = 666
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 112/160 (70%), Positives = 129/160 (80%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ D+KLAEGI LY+I++ K +I+ LIT +AKGGK IVFTQTKRDAD ++ A+
Sbjct: 323 VGDSDQKLAEGISLYSIASEMYEKASIVGPLITEHAKGGKCIVFTQTKRDADRLAYAMAR 382
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
EALHGDISQ QRERTL+GFR G F VLVATDVAARGLDIPNVDLIIHYELPN E
Sbjct: 383 NFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPNVDLIIHYELPNSSEI 442
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
FVHRSGRTGRAGK+GTAIL++ Q RTVR +ERD+GCKF
Sbjct: 443 FVHRSGRTGRAGKKGTAILIYAEQQARTVRFIERDIGCKF 482
>gi|296086337|emb|CBI31778.3| unnamed protein product [Vitis vinifera]
Length = 568
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 112/160 (70%), Positives = 129/160 (80%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ D+KLAEGI LY+I++ K +I+ LIT +AKGGK IVFTQTKRDAD ++ A+
Sbjct: 323 VGDSDQKLAEGISLYSIASEMYEKASIVGPLITEHAKGGKCIVFTQTKRDADRLAYAMAR 382
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
EALHGDISQ QRERTL+GFR G F VLVATDVAARGLDIPNVDLIIHYELPN E
Sbjct: 383 NFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPNVDLIIHYELPNSSEI 442
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
FVHRSGRTGRAGK+GTAIL++ Q RTVR +ERD+GCKF
Sbjct: 443 FVHRSGRTGRAGKKGTAILIYAEQQARTVRFIERDIGCKF 482
>gi|357494025|ref|XP_003617301.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355518636|gb|AET00260.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 802
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 111/160 (69%), Positives = 130/160 (81%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ D+KLA+GI LY+I + A K I+ LI +AKGGK IVFTQTKRDAD +S ++
Sbjct: 288 VGDSDQKLADGISLYSILSDAYVKAGIIVPLIKEHAKGGKCIVFTQTKRDADRISHGMSK 347
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
I EALHGDISQ QRERTL GFR G F VLVATDVA+RGLDIPNVDL+IHYELPN+ E
Sbjct: 348 SIPCEALHGDISQIQRERTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYELPNNSEI 407
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
FVHRSGRTGRAGK+GTAIL++T Q RT+R++ERDVGCKF
Sbjct: 408 FVHRSGRTGRAGKKGTAILVYTQDQSRTLRTIERDVGCKF 447
>gi|307104451|gb|EFN52705.1| hypothetical protein CHLNCDRAFT_36787, partial [Chlorella
variabilis]
Length = 689
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 136/329 (41%), Positives = 202/329 (61%), Gaps = 15/329 (4%)
Query: 27 LYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQ 86
+ A++ A ++R++L DL+TVY +GGK IVFTQTKR+ADEV+ ++ + ALHGD+SQ
Sbjct: 368 ITALAVPADARRSVLVDLLTVYGEGGKAIVFTQTKREADEVAASVGGHLPCGALHGDMSQ 427
Query: 87 HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 146
+RE+ L FR K VLVATDVAARGLDIP+VD+++HYELP DPE+F+HRSGRTGRAGK
Sbjct: 428 REREKVLASFRANKLMVLVATDVAARGLDIPDVDVVVHYELPQDPESFLHRSGRTGRAGK 487
Query: 147 EGTAILMFTSSQRRTVRSLERDVGCK-FEFVSPPVVEDVLESSAEQVVATLNGVHPESVE 205
GTAI MF + + + R+ + + ++ P V+E++A+QV+ L+GV E +
Sbjct: 488 SGTAIAMFQPKEIGYFKRILRETEVQGVKLITAPSPTQVIEAAAKQVMYRLDGVDAEVRK 547
Query: 206 FFTPTAQRLIEEKGTD-ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGF 264
+FTP A+ L+ + AL AALA LSG P RSL+ E+G TLQ+
Sbjct: 548 YFTPVAKMLLSSRDPQEALEAALAALSGIQEVPEPRSLLTMEEGIQTLQMMSKPGRITRP 607
Query: 265 MSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL------LNKQIPP 318
++G L + A +G+I ++ ++ GA FD+P ++ +E+ L+K+
Sbjct: 608 AHVSGIVGKLLEGTAFNAGAVGRIRMLEEEGQCGAAFDVPMDLGREIMARVDELHKR--- 664
Query: 319 GNTISKITKLPALQDDGPSSDNYGRFSSR 347
G +++ LPA +D GR+ SR
Sbjct: 665 GVSLTVPESLPAEED----LYQMGRYGSR 689
>gi|428178088|gb|EKX46965.1| hypothetical protein GUITHDRAFT_159596 [Guillardia theta CCMP2712]
Length = 676
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 134/334 (40%), Positives = 195/334 (58%), Gaps = 17/334 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG K+AEG+ A+++ A + T+L+DLIT+Y K IVF TKRDAD++ L
Sbjct: 248 VGESKLKVAEGVSHVAVASAARQRSTLLADLITIY-KTQHAIVFVNTKRDADDLVAELGL 306
Query: 74 II-ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
II +EALHGDI Q+ RE+ LNGFR G+ VL+ATDVAARGLDI ++DL++H+ +P D E
Sbjct: 307 IIKGTEALHGDIPQNVREKILNGFRTGRIPVLIATDVAARGLDIDHIDLVVHFGVPKDLE 366
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
F+HR+GRTGRAG+ GT++++F ++ + +E+D G KFE P ++++E+SA +
Sbjct: 367 MFIHRAGRTGRAGRTGTSLVLFDKAEAFQLTRIEKDAGIKFEKRGVPQPDEIMEASAIRA 426
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 252
L V+PE FF AQ L + G +LA ALA +SG+ PPS RSL+ E T+
Sbjct: 427 ADNLKTVNPELEGFFLGKAQELYAQDGIASLAKALAWMSGYKAPPSKRSLLTGEDELRTV 486
Query: 253 QLTRDSAFSRGFMSARSVMGFLSDVYPTAA-----DEIGKIHIIADDRVQGAVFDLPEEI 307
L+ + ++G + R VM +S+V + IGKI D AV D+
Sbjct: 487 LLSPAAQDAQGGLQVRDVMRIVSNVLSQSTLSPFDTRIGKIVRCQDG---SAVIDVSPMA 543
Query: 308 AKELL-------NKQIPPGNTISKITKLPALQDD 334
A+ L + + T +LP L+DD
Sbjct: 544 AQHLTTVVKGYESSRFYSEGTFILPNELPELEDD 577
>gi|242086224|ref|XP_002443537.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor]
gi|241944230|gb|EES17375.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor]
Length = 618
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 107/160 (66%), Positives = 126/160 (78%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG D+KLAEGI L ++S+ K +L +LI +AKGGK IVFTQTKRDAD +S +++
Sbjct: 305 VGEDDQKLAEGISLLSVSSENRQKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSHSMSR 364
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
EALHGDISQ QRERTL GFR G+F +L+ATDVAARGLDIPNVDL+IHYELPN E
Sbjct: 365 SFQCEALHGDISQSQRERTLGGFRDGRFNILIATDVAARGLDIPNVDLVIHYELPNSSEI 424
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
FVHRSGRTGRAGK+GTAI+M+ Q R VR +ERDVGCKF
Sbjct: 425 FVHRSGRTGRAGKKGTAIVMYNYEQSRAVRVIERDVGCKF 464
>gi|356499321|ref|XP_003518490.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 595
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/160 (67%), Positives = 129/160 (80%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ D+KLA+GI LY+I+T K IL+ LIT +AKGGK IVFTQTKRDAD +S A+
Sbjct: 296 VGDSDQKLADGISLYSIATDLYVKAGILAPLITEHAKGGKCIVFTQTKRDADRLSYAMAR 355
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ EALHGDISQ QRE+TL GFR G F VLVATDVA+RGLDIPNVDL+IHY+LPN+ E
Sbjct: 356 SVKCEALHGDISQAQREKTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYDLPNNSEI 415
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
FVHRSGRTGRAGK+GTAIL++T Q R V+ +ERDVG +F
Sbjct: 416 FVHRSGRTGRAGKKGTAILVYTEDQSRAVKLIERDVGSRF 455
>gi|356569971|ref|XP_003553167.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 643
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 107/160 (66%), Positives = 127/160 (79%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ D+KLA+GI LY+I + + +K IL+ LIT +A GGK IVFTQTKRDAD +S +
Sbjct: 295 VGDSDQKLADGISLYSIVSDSYTKAGILAPLITEHANGGKCIVFTQTKRDADRLSYVMAK 354
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ EALHGDISQ QRERTL GFR F VLVATDVA+RGLDIPNVDL+IHY+LPN E
Sbjct: 355 SLRCEALHGDISQTQRERTLAGFRNNNFNVLVATDVASRGLDIPNVDLVIHYDLPNSSEI 414
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
FVHRSGRTGRAGK+G+AIL FT Q R V+++ERDVGCKF
Sbjct: 415 FVHRSGRTGRAGKKGSAILFFTQDQFRAVQTIERDVGCKF 454
>gi|224139612|ref|XP_002323192.1| predicted protein [Populus trichocarpa]
gi|222867822|gb|EEF04953.1| predicted protein [Populus trichocarpa]
Length = 551
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/160 (66%), Positives = 128/160 (80%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ D+KLAEGI LY+I++ +K +IL LIT +AKGGK IVFT+TKRDAD ++ A+
Sbjct: 250 VGDSDKKLAEGITLYSIASDLYAKASILGPLITEHAKGGKCIVFTETKRDADRLAYAMAK 309
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
EALHGDISQ RERTL+GFR+G F +LVATDVAARGLD+PNVDLIIHY LP ET
Sbjct: 310 TYKCEALHGDISQSVRERTLSGFREGHFNILVATDVAARGLDVPNVDLIIHYALPRCSET 369
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
FVHRSGRTGRAGK+GTAIL++T + R VR +ERD GCKF
Sbjct: 370 FVHRSGRTGRAGKKGTAILIYTQDESRQVRIIERDTGCKF 409
>gi|143456572|sp|Q0D8N0.2|RH53_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 53
gi|218199081|gb|EEC81508.1| hypothetical protein OsI_24871 [Oryza sativa Indica Group]
gi|222636421|gb|EEE66553.1| hypothetical protein OsJ_23067 [Oryza sativa Japonica Group]
Length = 602
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 108/175 (61%), Positives = 137/175 (78%), Gaps = 2/175 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG++D+KL EGI LY+I++ K +IL LI +A GGK IVFTQTKR+AD ++ A+
Sbjct: 291 VGDEDQKLPEGISLYSIASEHYGKPSILGPLIKEHANGGKCIVFTQTKREADRLAYAMGR 350
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
A +ALHGDISQ+QRERTL+GFR G+F +LVATDVAARGLDIPNVDL+IHYELPN E
Sbjct: 351 SYACQALHGDISQNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLVIHYELPNTSEL 410
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS 188
FVHRSGRT RAGK+G+AIL++T+ Q R VR +E+D+GCKF + P +E E+S
Sbjct: 411 FVHRSGRTARAGKKGSAILIYTNDQARAVRIIEQDIGCKFTEL--PKIEVADEAS 463
>gi|356554094|ref|XP_003545384.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 610
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 107/160 (66%), Positives = 128/160 (80%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ D+KLA+GI LY+I+T K IL+ LIT +AKGGK IVFTQTKRDAD +S +
Sbjct: 291 VGDSDQKLADGISLYSIATDLYVKAGILAPLITEHAKGGKCIVFTQTKRDADRLSYTMAR 350
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ EALHGDISQ QRE+TL GFR G F VLVATDVA+RGLDIPNVDL+IHY+LPN+ E
Sbjct: 351 SVKCEALHGDISQAQREKTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYDLPNNSEI 410
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
FVHRSGRTGRAGK+GTAIL++T Q R V+ +ERDVG +F
Sbjct: 411 FVHRSGRTGRAGKKGTAILVYTEDQSRAVKLIERDVGSRF 450
>gi|414868924|tpg|DAA47481.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
isoform 1 [Zea mays]
gi|414868925|tpg|DAA47482.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
isoform 2 [Zea mays]
Length = 611
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 107/160 (66%), Positives = 125/160 (78%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG D+KLAEGI L A+S+ K +L +LI +AKGGK IVFTQTKRDAD +S ++
Sbjct: 301 VGEDDQKLAEGISLLAVSSENREKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSHNMSR 360
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
EALHGDISQ QRERTL GFR G+F +L+ATDVAARGLDIPNVDL+IH+ELPN E
Sbjct: 361 SFQCEALHGDISQSQRERTLAGFRDGRFNILIATDVAARGLDIPNVDLVIHFELPNSSEL 420
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
FVHRSGRTGRAGK+GTAI+M+ Q R VR +ERDVGCKF
Sbjct: 421 FVHRSGRTGRAGKKGTAIVMYNYDQSRAVRVIERDVGCKF 460
>gi|308080376|ref|NP_001183357.1| uncharacterized protein LOC100501766 [Zea mays]
gi|223949963|gb|ACN29065.1| unknown [Zea mays]
gi|238010976|gb|ACR36523.1| unknown [Zea mays]
Length = 483
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 107/160 (66%), Positives = 125/160 (78%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG D+KLAEGI L A+S+ K +L +LI +AKGGK IVFTQTKRDAD +S ++
Sbjct: 173 VGEDDQKLAEGISLLAVSSENREKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSHNMSR 232
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
EALHGDISQ QRERTL GFR G+F +L+ATDVAARGLDIPNVDL+IH+ELPN E
Sbjct: 233 SFQCEALHGDISQSQRERTLAGFRDGRFNILIATDVAARGLDIPNVDLVIHFELPNSSEL 292
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
FVHRSGRTGRAGK+GTAI+M+ Q R VR +ERDVGCKF
Sbjct: 293 FVHRSGRTGRAGKKGTAIVMYNYDQSRAVRVIERDVGCKF 332
>gi|356524181|ref|XP_003530710.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 605
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 104/160 (65%), Positives = 128/160 (80%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ D+KLA+GI LY+I + + +K IL+ LIT +A GGK IVFTQTKRDAD +S +
Sbjct: 296 VGDSDQKLADGISLYSIVSDSYTKAGILAPLITEHANGGKCIVFTQTKRDADRLSYVMAK 355
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ EALHGDISQ QRE+TL GFR F VLVATDVA+RGLDIPNVDL+IHY+LPN E
Sbjct: 356 SLRCEALHGDISQTQREKTLAGFRNNNFNVLVATDVASRGLDIPNVDLVIHYDLPNSSEI 415
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
FVHRSGRTGRAGK+G+AIL++T Q R V++++RDVGCKF
Sbjct: 416 FVHRSGRTGRAGKKGSAILVYTQGQSRAVQTIQRDVGCKF 455
>gi|302783853|ref|XP_002973699.1| hypothetical protein SELMODRAFT_99603 [Selaginella moellendorffii]
gi|302787961|ref|XP_002975750.1| hypothetical protein SELMODRAFT_103888 [Selaginella moellendorffii]
gi|300156751|gb|EFJ23379.1| hypothetical protein SELMODRAFT_103888 [Selaginella moellendorffii]
gi|300158737|gb|EFJ25359.1| hypothetical protein SELMODRAFT_99603 [Selaginella moellendorffii]
Length = 445
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 106/169 (62%), Positives = 131/169 (77%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ DEKLAEGIKLY+ + +K +L +L+ Y KGGK IVF +TKRD V+ A++
Sbjct: 216 VGDNDEKLAEGIKLYSCEASDYNKGPLLKELVNSYGKGGKVIVFAKTKRDTHNVAQAMSR 275
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ EALHGDI Q QRERTL+GFR G+F+VLVATDVAARGLDIPNVDL+IHYE+P D ET
Sbjct: 276 SVPCEALHGDIPQFQRERTLSGFRDGRFSVLVATDVAARGLDIPNVDLVIHYEVPGDSET 335
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 182
FVHRSGRTGRAGK+G AILM T +Q R ++E DVGC+FE ++ P V+
Sbjct: 336 FVHRSGRTGRAGKKGVAILMHTYAQGRVRDTIEHDVGCRFEALNVPNVD 384
>gi|449463625|ref|XP_004149532.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Cucumis
sativus]
Length = 593
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 102/169 (60%), Positives = 132/169 (78%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ D+KLA+GI L+++ + K +I+ LIT + KGGK I+FTQTKRDAD ++ A+
Sbjct: 315 VGDSDQKLADGISLFSVVSETYGKASIIGPLITEHGKGGKCIIFTQTKRDADRLAYAMGR 374
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ EALHGDISQ QRERTL+GFR G+F VLVATDVAARGLDIPNVDL+IH+ELPN+ E
Sbjct: 375 NLRCEALHGDISQSQRERTLSGFRDGRFNVLVATDVAARGLDIPNVDLVIHFELPNNTEI 434
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 182
FVHRSGRTGRAGK+G+ IL+++ Q R +R +ER+VGC+F + VE
Sbjct: 435 FVHRSGRTGRAGKKGSVILIYSQDQTRAIRMIEREVGCRFNELPRITVE 483
>gi|449505807|ref|XP_004162573.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Cucumis
sativus]
Length = 611
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 102/169 (60%), Positives = 132/169 (78%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ D+KLA+GI L+++ + K +I+ LIT + KGGK I+FTQTKRDAD ++ A+
Sbjct: 315 VGDSDQKLADGISLFSVVSETYGKASIIGPLITEHGKGGKCIIFTQTKRDADRLAYAMGR 374
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ EALHGDISQ QRERTL+GFR G+F VLVATDVAARGLDIPNVDL+IH+ELPN+ E
Sbjct: 375 NLRCEALHGDISQSQRERTLSGFRDGRFNVLVATDVAARGLDIPNVDLVIHFELPNNTEI 434
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 182
FVHRSGRTGRAGK+G+ IL+++ Q R +R +ER+VGC+F + VE
Sbjct: 435 FVHRSGRTGRAGKKGSVILIYSQDQTRAIRMIEREVGCRFNELPRITVE 483
>gi|326534262|dbj|BAJ89481.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 218 bits (554), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 101/160 (63%), Positives = 127/160 (79%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ ++KL EGI LY+I + K +IL LI +A GGK IVFTQTKR+AD ++ A+
Sbjct: 294 VGDSEQKLPEGISLYSIVSENYGKSSILGPLIKEHADGGKCIVFTQTKREADRLAYAMGR 353
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
A +ALHGDISQ+QRERTL+GFR G+F +LVATDVAARGLDIPNVDL++HYE+PN E
Sbjct: 354 SYACQALHGDISQNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLVVHYEIPNSSEL 413
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
FVHRSGRT RAGK+G AILM+T Q RTV+ +E+D+GC+F
Sbjct: 414 FVHRSGRTARAGKKGIAILMYTYEQSRTVKGIEQDIGCRF 453
>gi|357111676|ref|XP_003557638.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like
[Brachypodium distachyon]
Length = 604
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/160 (62%), Positives = 127/160 (79%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG D+KL EGI LY+I++ K +IL LI +A GGK IVFTQTKR+AD ++ ++
Sbjct: 291 VGESDQKLPEGISLYSIASENYGKSSILGTLIKEHANGGKCIVFTQTKREADRLAYSMGR 350
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
A +ALHGDI+Q+QRERTL+GFR+G+F +LVATDVAARGLDIPNVDL++HYE+PN E
Sbjct: 351 SYACQALHGDITQNQRERTLSGFREGRFNILVATDVAARGLDIPNVDLVVHYEIPNSSEL 410
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
FVHRSGRT RAGK+G AILM+T Q R VR +E+D+GC+F
Sbjct: 411 FVHRSGRTARAGKKGIAILMYTYEQSRAVRVIEQDIGCRF 450
>gi|224089849|ref|XP_002308835.1| predicted protein [Populus trichocarpa]
gi|222854811|gb|EEE92358.1| predicted protein [Populus trichocarpa]
Length = 556
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 104/160 (65%), Positives = 127/160 (79%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ D KLA+GI LY+I++ +K +IL LIT +AKGGK IVFT+TKRDAD ++ A+
Sbjct: 275 VGDSDRKLADGITLYSIASDMYAKASILGPLITEHAKGGKCIVFTETKRDADRLAYAMAK 334
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
EALHGDISQ+ RERTL+GFR+G F +LVATDVAARGLD+PNVDLIIHY LP ET
Sbjct: 335 NHKCEALHGDISQNVRERTLSGFREGHFNILVATDVAARGLDVPNVDLIIHYALPRCSET 394
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
FVHRSGRTGRAGK+GTAIL++T R V+ +ERD GC+F
Sbjct: 395 FVHRSGRTGRAGKKGTAILIYTQDDARQVKLIERDTGCRF 434
>gi|242047398|ref|XP_002461445.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor]
gi|241924822|gb|EER97966.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor]
Length = 602
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 103/171 (60%), Positives = 132/171 (77%), Gaps = 1/171 (0%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ D+KL EGI LY+I++ K++IL LI +A GGK IVFTQTKRDAD ++ +
Sbjct: 293 VGDSDQKLPEGISLYSIASDNFGKQSILGPLIKEHANGGKCIVFTQTKRDADRLAYVMGR 352
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ALHGDISQ+QRERTL+GFR G+F +LVATDVAARGLDIPNVDL++HYE+PN E
Sbjct: 353 SYPCQALHGDISQNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLVVHYEIPNTSEL 412
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF-EFVSPPVVED 183
FVHRSGRT RAGK+G+AIL++T Q R VR +E+D+GC+F E PV ++
Sbjct: 413 FVHRSGRTARAGKKGSAILIYTYEQTRAVRVIEQDIGCRFTELPKMPVSDE 463
>gi|320335085|ref|YP_004171796.1| DEAD/DEAH box helicase [Deinococcus maricopensis DSM 21211]
gi|319756374|gb|ADV68131.1| DEAD/DEAH box helicase domain protein [Deinococcus maricopensis DSM
21211]
Length = 604
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 132/320 (41%), Positives = 185/320 (57%), Gaps = 14/320 (4%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG + A+ ++ + T R +L+D +T+Y + IVFT+TKR+ DE+++ L
Sbjct: 205 VGESRMQAAQTVQHLKVKVGRTRTR-VLADFLTIY-NPERAIVFTRTKREVDELAMELIH 262
Query: 74 I-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+ +EALHGD++Q QRER L FR G+ VLVATDVAARGLDIP +DL++ Y LP DPE
Sbjct: 263 RGLEAEALHGDLAQSQRERALGSFRAGRVRVLVATDVAARGLDIPEIDLVVQYHLPQDPE 322
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
++VHRSGRTGRAG+ GTAI+M+ + R +R+LE G KFE S P ++V E+SA
Sbjct: 323 SYVHRSGRTGRAGRTGTAIVMYGEREGRELRNLEYQTGVKFEERSIPTPKEVREASARAA 382
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 252
+ V E + F A+RL E G DALA ALA++SG ++P + SL++ E+G T+
Sbjct: 383 ADNVKKVDAEMAQPFMAEAERLFSELGLDALARALAKISGVTQPAVNASLLSGEEGMTTI 442
Query: 253 QLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELL 312
L + MS + ++ +GKI + GAV DLP E LL
Sbjct: 443 ILNAER------MSVARAVALIARSTDIDTRRLGKIRLWRG----GAVADLPNEAVAPLL 492
Query: 313 NKQ-IPPGNTISKITKLPAL 331
K I TI +LP L
Sbjct: 493 AKNPIDDEVTIEVAQELPEL 512
>gi|297830946|ref|XP_002883355.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
lyrata]
gi|297329195|gb|EFH59614.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
lyrata]
Length = 612
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 105/169 (62%), Positives = 130/169 (76%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ D+KLA+GI Y+I + + +I+ L+T +AKGGK IVFTQTKRDAD +S AL
Sbjct: 309 VGDSDQKLADGITTYSILADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALAR 368
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
EALHGDISQ QRERTL GFR G F +LVATDVAARGLD+PNVDLIIHYELPN+ ET
Sbjct: 369 SFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTET 428
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 182
FVHR+GRTGRAGK+G+AIL+++ Q R V+ +ER+VG +F + VE
Sbjct: 429 FVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVGSRFTELPSIAVE 477
>gi|222617461|gb|EEE53593.1| hypothetical protein OsJ_36838 [Oryza sativa Japonica Group]
Length = 676
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 102/160 (63%), Positives = 124/160 (77%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG D+KLAEGI LY+I++ +K +L +LI +AKGGK IVFTQTKRDAD +S +
Sbjct: 353 VGEDDQKLAEGISLYSIASEGHAKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSYTMGR 412
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ALHGDI+Q QRERTL GFR+G F +L+ATDVAARGLDIPNVDL+IH+ELPN E
Sbjct: 413 SFQCQALHGDITQAQRERTLKGFREGHFNILIATDVAARGLDIPNVDLVIHFELPNSSEL 472
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
FVHRSGRTGRAGK+G AI+M + Q R +R +E DVGCKF
Sbjct: 473 FVHRSGRTGRAGKKGKAIVMHSYQQSRAIRMVENDVGCKF 512
>gi|22331253|ref|NP_188872.2| DEAD-box ATP-dependent RNA helicase 53 [Arabidopsis thaliana]
gi|75335516|sp|Q9LUW5.1|RH53_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 53
gi|9293867|dbj|BAB01770.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|17064852|gb|AAL32580.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|20259816|gb|AAM13255.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|332643101|gb|AEE76622.1| DEAD-box ATP-dependent RNA helicase 53 [Arabidopsis thaliana]
Length = 616
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/169 (62%), Positives = 130/169 (76%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ D+KLA+GI Y+I + + +I+ L+T +AKGGK IVFTQTKRDAD +S AL
Sbjct: 312 VGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALAR 371
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
EALHGDISQ QRERTL GFR G F +LVATDVAARGLD+PNVDLIIHYELPN+ ET
Sbjct: 372 SFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTET 431
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 182
FVHR+GRTGRAGK+G+AIL+++ Q R V+ +ER+VG +F + VE
Sbjct: 432 FVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVGSRFTELPSIAVE 480
>gi|122227760|sp|Q0ILZ4.1|RH9_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 9
Length = 628
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 102/160 (63%), Positives = 124/160 (77%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG D+KLAEGI LY+I++ +K +L +LI +AKGGK IVFTQTKRDAD +S +
Sbjct: 305 VGEDDQKLAEGISLYSIASEGHAKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSYTMGR 364
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ALHGDI+Q QRERTL GFR+G F +L+ATDVAARGLDIPNVDL+IH+ELPN E
Sbjct: 365 SFQCQALHGDITQAQRERTLKGFREGHFNILIATDVAARGLDIPNVDLVIHFELPNSSEL 424
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
FVHRSGRTGRAGK+G AI+M + Q R +R +E DVGCKF
Sbjct: 425 FVHRSGRTGRAGKKGKAIVMHSYQQSRAIRMVENDVGCKF 464
>gi|414877991|tpg|DAA55122.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 472
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 104/160 (65%), Positives = 124/160 (77%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG D+KLAEGI L ++S+ K +L LI +AKGGK IVFTQTKRDAD +S ++
Sbjct: 173 VGEDDQKLAEGISLLSVSSENREKPAVLGKLIKEHAKGGKCIVFTQTKRDADRLSHNMSR 232
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
EALHGDISQ +RERTL GFR G+F +L+ATDVA+RGLDIPNVDL+IH+ELPN E
Sbjct: 233 SFQCEALHGDISQSERERTLAGFRDGRFNILIATDVASRGLDIPNVDLVIHFELPNSSEI 292
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
FVHRSGRTGRAGK+GTAI+M+ Q R VR +ERDVGCKF
Sbjct: 293 FVHRSGRTGRAGKKGTAIVMYNYEQSRAVRVIERDVGCKF 332
>gi|125537372|gb|EAY83860.1| hypothetical protein OsI_39082 [Oryza sativa Indica Group]
Length = 630
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 102/160 (63%), Positives = 124/160 (77%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG D+KLAEGI LY+I++ +K +L +LI +AKGGK IVFTQTKRDAD +S +
Sbjct: 305 VGEDDQKLAEGISLYSIASEGHAKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSYTMGR 364
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ALHGDI+Q QRERTL GFR+G F +L+ATDVAARGLDIPNVDL+IH+ELPN E
Sbjct: 365 SFQCQALHGDITQAQRERTLKGFREGHFNILIATDVAARGLDIPNVDLVIHFELPNSSEL 424
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
FVHRSGRTGRAGK+G AI+M + Q R +R +E DVGCKF
Sbjct: 425 FVHRSGRTGRAGKKGKAIVMHSYQQSRAIRMVENDVGCKF 464
>gi|429220700|ref|YP_007182344.1| DNA/RNA helicase [Deinococcus peraridilitoris DSM 19664]
gi|429131563|gb|AFZ68578.1| DNA/RNA helicase, superfamily II [Deinococcus peraridilitoris DSM
19664]
Length = 570
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 143/365 (39%), Positives = 204/365 (55%), Gaps = 20/365 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG + + ++ + AI R +L+DL+TVY + IVFT+TKR+ADE+SL L
Sbjct: 205 VGERASQASQTVTHLAIKVGRVRTR-VLADLLTVY-NPERAIVFTRTKREADELSLELIH 262
Query: 74 I-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
I +EALHGD++Q QRER L FR G+ VLVATDVAARGLDIP VDL++ Y +PND E
Sbjct: 263 RGIEAEALHGDLAQSQRERALGAFRAGRVRVLVATDVAARGLDIPEVDLVVQYHMPNDTE 322
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+VHRSGRTGRAG+EGTAI+++ + R + +LER G +F + P ++V E+SA
Sbjct: 323 AYVHRSGRTGRAGREGTAIVLYGDREGRELSNLERATGVRFTPRAVPTAKEVREASARTA 382
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 252
+ + + F A++L E G DALA ALA+++G + P +S SL++ E+ T+
Sbjct: 383 ADAVRHIENDLGASFKEEAEKLFAELGVDALARALAKIAGVTAPATSASLLSGEENMTTV 442
Query: 253 QLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELL 312
L + MS + ++ + +GK+ + GAV D+P LL
Sbjct: 443 ILHAER------MSVARAVALIARGLDIESRSLGKVRLWRG----GAVADIPAANIPTLL 492
Query: 313 NKQIPPGNTISKIT-KLPALQDDGPSSDNYGRFSSRD-----RFSRGGGSRFSRGG-ARG 365
K G ++ +LP L D GR+ RD SRG G SR G +RG
Sbjct: 493 EKSPLEGEVRVEVADELPELFDMPERESRGGRYGDRDGRGARSDSRGRGGYASRDGESRG 552
Query: 366 GARGG 370
G+R G
Sbjct: 553 GSRDG 557
>gi|326527477|dbj|BAK08013.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 614
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 103/161 (63%), Positives = 127/161 (78%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG D+KLAEGI L +I+T +K +L+ LI +AKGGK IVFTQTKRDAD +S +
Sbjct: 312 VGEDDQKLAEGISLLSIATENHAKPAVLAQLIQDHAKGGKCIVFTQTKRDADRLSYTMGR 371
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ +ALHGDI+Q QRERTL GFR+G+F+ L+ATDVAARGLDIPNVDL+IHYELPN+ E
Sbjct: 372 TVQCQALHGDITQGQRERTLQGFREGRFSTLIATDVAARGLDIPNVDLVIHYELPNNSEI 431
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 174
FVHRSGRTGRAGK+G AI+M+ +Q R VR +E DVG KF+
Sbjct: 432 FVHRSGRTGRAGKKGIAIVMYGYNQSRAVRGIENDVGGKFQ 472
>gi|357156628|ref|XP_003577522.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Brachypodium
distachyon]
Length = 613
Score = 211 bits (536), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 103/161 (63%), Positives = 125/161 (77%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG D+KLAEGI L +I+T +K +L+ LI + KGGK IVFTQTKRDAD ++ +
Sbjct: 306 VGEDDQKLAEGISLLSIATENHAKPAVLAQLIQDHGKGGKCIVFTQTKRDADRLAFTMGR 365
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
I + LHGDISQ QRERTL GFR G+F+ L+ATDVAARGLDIPNVDL+IHYELPN E
Sbjct: 366 SIQCQPLHGDISQVQRERTLAGFRDGRFSTLIATDVAARGLDIPNVDLVIHYELPNSSEI 425
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 174
FVHRSGRTGRAGK+GTAI+M + Q R+VR +E+DVG KF+
Sbjct: 426 FVHRSGRTGRAGKKGTAIVMHSYQQSRSVRGIEQDVGGKFK 466
>gi|297830944|ref|XP_002883354.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp.
lyrata]
gi|297329194|gb|EFH59613.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp.
lyrata]
Length = 615
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 99/169 (58%), Positives = 127/169 (75%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ D+KLA+GI +Y+I+ + + +I+ L+ + KGGK IVFTQTKRDAD ++ L
Sbjct: 328 VGDSDQKLADGITMYSIAADSYGRASIIGPLVNEHGKGGKCIVFTQTKRDADRLAFGLAK 387
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
EALHGDISQ QRERTL GFR G F +LVATDVAARGLD+PNVDL+IHYELPN+ ET
Sbjct: 388 SFKCEALHGDISQAQRERTLAGFRDGNFNILVATDVAARGLDVPNVDLVIHYELPNNTET 447
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 182
FVHR+GRTGRAGK+G+AIL+ Q R V+ +E++VG +F + VE
Sbjct: 448 FVHRTGRTGRAGKKGSAILIHGQEQSRAVKMIEKEVGSRFNELPSIAVE 496
>gi|15228722|ref|NP_188870.1| DEAD-box ATP-dependent RNA helicase 9 [Arabidopsis thaliana]
gi|75335517|sp|Q9LUW6.1|RH9_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 9
gi|9293865|dbj|BAB01768.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|20268676|gb|AAM14042.1| putative RNA helicase [Arabidopsis thaliana]
gi|332643099|gb|AEE76620.1| DEAD-box ATP-dependent RNA helicase 9 [Arabidopsis thaliana]
Length = 610
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 99/169 (58%), Positives = 128/169 (75%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ D+KLA+GI +Y+I+ + + +I+ L+ + KGGK IVFTQTKRDAD ++ L
Sbjct: 324 VGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAK 383
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
EALHGDISQ QRERTL GFR G F++LVATDVAARGLD+PNVDL+IHYELPN+ ET
Sbjct: 384 SYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTET 443
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 182
FVHR+GRTGRAGK+G+AIL+ Q R V+ +E++VG +F + VE
Sbjct: 444 FVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEKEVGSRFNELPSIAVE 492
>gi|3775995|emb|CAA09200.1| RNA helicase [Arabidopsis thaliana]
Length = 363
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 99/169 (58%), Positives = 128/169 (75%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ D+KLA+GI +Y+I+ + + +I+ L+ + KGGK IVFTQTKRDAD ++ L
Sbjct: 77 VGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAK 136
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
EALHGDISQ QRERTL GFR G F++LVATDVAARGLD+PNVDL+IHYELPN+ ET
Sbjct: 137 SYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTET 196
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 182
FVHR+GRTGRAGK+G+AIL+ Q R V+ +E++VG +F + VE
Sbjct: 197 FVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEKEVGSRFNELPSIAVE 245
>gi|226510222|ref|NP_001147777.1| nucleolar RNA helicase 2 [Zea mays]
gi|195613718|gb|ACG28689.1| nucleolar RNA helicase 2 [Zea mays]
Length = 613
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 100/171 (58%), Positives = 130/171 (76%), Gaps = 1/171 (0%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ D+KL EGI LY+I++ K +I+ LI +A GK IVFTQTKR+AD ++ +
Sbjct: 302 VGDSDQKLPEGISLYSIASDNFGKPSIIGPLIKEHANVGKCIVFTQTKREADRLAYVMGR 361
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ALHGDISQ+QRERTL+GFR G+F +LVATDVAARGLDIPNVDL++HYE+PN E
Sbjct: 362 SYQCQALHGDISQNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLVVHYEIPNTSEL 421
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF-EFVSPPVVED 183
FVHRSGRT RAGK+G+AIL++T Q R VR +E+D+GC+F E PV ++
Sbjct: 422 FVHRSGRTARAGKKGSAILIYTYEQTRAVRVIEQDIGCRFTELPKMPVSDE 472
>gi|325283382|ref|YP_004255923.1| DEAD/DEAH box helicase domain protein [Deinococcus proteolyticus
MRP]
gi|324315191|gb|ADY26306.1| DEAD/DEAH box helicase domain protein [Deinococcus proteolyticus
MRP]
Length = 612
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 134/335 (40%), Positives = 186/335 (55%), Gaps = 28/335 (8%)
Query: 36 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLN 94
S+ +L+DL+TVY K IVFT+TKR+ DE++L L +EALHGD++Q+QRER L
Sbjct: 226 SRTRVLADLLTVY-NPEKAIVFTRTKRETDELALELIHRGFEAEALHGDLAQNQRERALG 284
Query: 95 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMF 154
FR G+ ++LVATDVAARGLDIP VDL++ Y LP DPE++VHRSGRTGRAG+ GTAI+M+
Sbjct: 285 SFRSGRTSILVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRAGTAIIMY 344
Query: 155 TSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRL 214
++R + LER G +F P +V E+SA L V E+ F A+ L
Sbjct: 345 GDREQRDINGLERVTGVRFTERPLPTPREVQEASAHASSEMLRRVDAEAAAGFMEQAEAL 404
Query: 215 IEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFL 274
+EE G +ALA ALA++SG + P + SL++ E+G TL L + +S + L
Sbjct: 405 LEEMGAEALARALAKISGVTEPQAPASLLSGEEGQTTLILHGER------LSIARAVALL 458
Query: 275 SDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNT-ISKITKLPALQD 333
+ + ++GK+ GAV D+P + L+ G + +LP L
Sbjct: 459 ARHSDVDSRKLGKVRQWRG----GAVADVPTQYVAALMKASPLDGEIGVEVAQELPEL-- 512
Query: 334 DGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGAR 368
F R R GG F G RGG R
Sbjct: 513 ----------FEQPTRERRDGGRSF---GDRGGRR 534
>gi|198285649|gb|ACH85363.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Salmo salar]
Length = 611
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 104/249 (41%), Positives = 163/249 (65%), Gaps = 3/249 (1%)
Query: 8 FSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADE 66
+ H +G + +K A ++ AI+ + + ++ D++ VY+ G+TIVF +TK+DA+E
Sbjct: 241 YEHVDLIGKKTQKAATTVEHLAIACHWSQRAAVIGDVVQVYSGSHGRTIVFCETKKDANE 300
Query: 67 VSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE 126
+S+ + +S++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++
Sbjct: 301 LSMNASIKQSSQSLHGDIPQKQREITLKGFRSGTFEVLVATNVAARGLDIPEVDLVVQCS 360
Query: 127 LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 186
P D E+++HRSGRTGRAG+ G I + + +R +E+ G F+ V P D+++
Sbjct: 361 PPKDVESYIHRSGRTGRAGRTGVCICFYQRKEEDQLRYVEQKAGITFKRVGVPTANDIIK 420
Query: 187 SSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINH 245
SS++ V L+ V P+++E+F +A +LIEE+G +AL+AALA +SG + RSL+N
Sbjct: 421 SSSKDAVRFLDSVPPQAIEYFRVSATKLIEERGAVEALSAALAHISG-ATALEQRSLLNS 479
Query: 246 EQGWVTLQL 254
+ G+ T+ +
Sbjct: 480 DTGYTTMTM 488
>gi|74211590|dbj|BAE26522.1| unnamed protein product [Mus musculus]
Length = 851
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 139/398 (34%), Positives = 212/398 (53%), Gaps = 45/398 (11%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK+DA E+S
Sbjct: 472 IGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTC 531
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E
Sbjct: 532 IKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVE 591
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + + +E+ G KF+ + P +++++S++
Sbjct: 592 SYIHRSGRTGRAGRTGVCICFYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDA 651
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT
Sbjct: 652 IRLLDSVPPTAISHFKQSAEKLIEEKGDVEALAAALAHISGATS-VDQRSLINSQAGFVT 710
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G V FD
Sbjct: 711 M-----------ILRCSIEMPNISYAWKELKEQLGE---SIDAKVKGMVFLKGKLGVCFD 756
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRD------RFSRGGG 355
+ E E+ K ++ T+ P L +GP GR RD R RGG
Sbjct: 757 VRTEAVTEIQEKWHDSRRWQLTVATEQPEL--EGPPDGYRGRMGQRDGSRGAFRGQRGGS 814
Query: 356 SRFSRGGARGGAR--------GGGSMDRRGFRSSRSWG 385
F G RGG+R GG +R F S+++G
Sbjct: 815 RNFRGQGQRGGSRNFRGQRPGGGNRGQKRSF--SKAFG 850
>gi|440791138|gb|ELR12392.1| DEAD/DEAH box helicase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 723
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 134/332 (40%), Positives = 199/332 (59%), Gaps = 23/332 (6%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VGN K A ++ AI + + ++D++ VYA G+TIVF TK + +E+++ +
Sbjct: 331 VGNSKLKAALTVRHLAICCPPPVRISTMADVVKVYAGTGRTIVFANTKAEVNELAMKSSI 390
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ LHGDI+Q QRE TL GFR+G+F+ LVATDVAARGLDI +VDL+I + P D ET
Sbjct: 391 SNVCQVLHGDIAQKQREITLQGFREGRFSCLVATDVAARGLDIDDVDLVIQTQAPKDKET 450
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRS-----LERDVGCKFEFVSPPVVEDVLESS 188
++HRSGRTGRAGK G + FT RR VR LE VG KFE + P D++ +
Sbjct: 451 YIHRSGRTGRAGKSGICVTFFT---RRDVRDGNLKWLESAVGAKFELIGTPQQPDLIRVA 507
Query: 189 AEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQ 247
+ V L VH E ++ F P+A++LI+EKG +ALAAALA +SG+++P RSL++ +
Sbjct: 508 TDAVEEKLEHVHDEMIKAFLPSAEKLIQEKGENEALAAALAVISGYTQPLQKRSLLSSTE 567
Query: 248 GWVTLQLTRDSAFSRG----FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDL 303
G+ T+ L ++S RG FM + FL D ++ I D+ AV +L
Sbjct: 568 GYSTV-LLKNSLPIRGVGWVFMIIKK---FLGD---EIEGQVKDIEFCQDEHC--AVAEL 618
Query: 304 PEEIAKELLNKQ-IPPGNTISKITKLPALQDD 334
P+ +A +L+ + IP G I+ ++P L+++
Sbjct: 619 PQALAVKLVESRGIPNGLEITIPNEIPPLKEN 650
>gi|94984710|ref|YP_604074.1| DEAD/DEAH box helicase [Deinococcus geothermalis DSM 11300]
gi|94554991|gb|ABF44905.1| ATP-dependent RNA helicase DbpA [Deinococcus geothermalis DSM
11300]
Length = 591
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 144/375 (38%), Positives = 199/375 (53%), Gaps = 20/375 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG + A+ ++ + T R +L+DL+TVY K IVFT+TKR+ADE++ L
Sbjct: 210 VGEGKSQAAQSVEHLKVKVGRTRTR-VLADLLTVY-NPEKAIVFTRTKREADELANELIH 267
Query: 74 I-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
I SEALHGD++Q QRER L FR G+ VLVATDVAARGLDIP VDL++ Y LP DPE
Sbjct: 268 RGIESEALHGDLAQSQRERALGAFRSGRVGVLVATDVAARGLDIPEVDLVVQYHLPQDPE 327
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
++VHRSGRTGRAG+ GTAI+M+ + R +R+LE G +F+ P ++V +SA
Sbjct: 328 SYVHRSGRTGRAGRTGTAIVMYGDRENRELRNLEYRTGVQFKERPLPTPKEVQAASARAS 387
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 252
+ V F A+RL E G +ALA ALA++SG + P + SL++ E+G TL
Sbjct: 388 ADLVRKVDSGVAATFQAEAERLFSELGLEALARALAKISGVTEPVQAASLLSGEEGLTTL 447
Query: 253 QLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELL 312
L + +S + L+ +GK+ G V D+P E ++LL
Sbjct: 448 ILRGER------LSVPRTVALLARSGDVDTRRLGKVRQWRG----GTVADVPSEYVEKLL 497
Query: 313 NKQIPPGNTISKITK-LPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARG-GARGG 370
G ++ + LP L + G + R GSR RG G G R G
Sbjct: 498 AASPLEGEVHLEVAQELPELFEAPTREGRQGSYGPRTGSRDESGSRNFRGSRGGYGNREG 557
Query: 371 GSMDRRGFRSSRSWG 385
GS +G WG
Sbjct: 558 GSRGSQG-----RWG 567
>gi|15807648|ref|NP_295347.1| RNA helicase [Deinococcus radiodurans R1]
Length = 560
Score = 204 bits (519), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 119/278 (42%), Positives = 168/278 (60%), Gaps = 12/278 (4%)
Query: 36 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLN 94
S+ +L+DL+TVY K IVFT+TKR+ADE++ L + SEALHGD++Q QRER L
Sbjct: 107 SRTRVLADLLTVY-NPEKAIVFTRTKREADELANELIHRGLESEALHGDLAQTQRERALG 165
Query: 95 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMF 154
FR G+ VLVATDVAARGLDIP VDL++ Y LP DPE++VHRSGRTGRAG+ GTAI+M+
Sbjct: 166 AFRSGRVGVLVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIIMY 225
Query: 155 TSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRL 214
+ R V LER G +F+ P +V ++SA + V PE+ + F A++L
Sbjct: 226 GDRENREVMGLERITGVRFKERPLPTPSEVAQASARASSEMVRRVDPEAAQGFQAEAEQL 285
Query: 215 IEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFL 274
E G +ALA ALA++SG + P + SL++ E+G TL L + +S + +
Sbjct: 286 FSELGLEALARALAKISGVTEPAKAASLLSGEEGLTTLILHGER------LSVPRTVALI 339
Query: 275 SDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELL 312
+ +GK+ G V D+P E ++L+
Sbjct: 340 ARAVDVDTRRLGKVR----QWRGGTVADVPSEFVEKLM 373
>gi|355782883|gb|EHH64804.1| hypothetical protein EGM_18115 [Macaca fascicularis]
Length = 783
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 143/406 (35%), Positives = 215/406 (52%), Gaps = 45/406 (11%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 400 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSA 459
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 460 IKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVE 519
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 520 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDA 579
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAA LA +SG + RSLIN G+VT
Sbjct: 580 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAATLAHISG-AMSVDQRSLINSNVGFVT 638
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G V FD
Sbjct: 639 M-----------ILQCSIEMPNISYAWKELKEQLGE---EIDSKVKGMVFLKGKLGVCFD 684
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRG------GG 355
+P E+ K +S T+ P L +GP + YG F + SRG G
Sbjct: 685 VPTASVTEIQEKWHDSRRWQLSVATEQPEL--EGP-REGYGGFRGQREGSRGFRGQRDGN 741
Query: 356 SRF--SRGGARG--GARGGGSMDRRGFRSSRSWGSDDEDGFSSSRG 397
RF R G+RG G R GG G +S+RS + FS + G
Sbjct: 742 RRFRGQREGSRGPRGQRSGG-----GNKSNRSQNKGQKRSFSKAFG 782
>gi|326429375|gb|EGD74945.1| DEAD box polypeptide 47 isoform 1 [Salpingoeca sp. ATCC 50818]
Length = 711
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 130/325 (40%), Positives = 191/325 (58%), Gaps = 10/325 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALT 72
VG + + + G++ A+ ++ T+++D++ VY+ G+T++FTQTKRDA+E++L T
Sbjct: 327 VGKEMNRTSTGVQHLALRCPWQARNTVIADVVQVYSGAHGRTMIFTQTKRDANELALNDT 386
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+ LHGDI+Q QRE +L FR GK LVATDVAARG+DIP VDL++ E P D E
Sbjct: 387 LKQEVQVLHGDIAQKQRELSLQCFRDGKVRCLVATDVAARGIDIPEVDLVVQCEPPKDVE 446
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG++GT I + +Q + +R +ER G F + P D++++SA
Sbjct: 447 SYIHRSGRTGRAGRKGTCICFYKPNQEQQLREVERRAGISFTRIGAPQPADIIKASARDA 506
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG--TDALAAALAQLSGFSRPPSSRSLINHEQGWV 250
L+ V + + +F AQ IEEKG DALAAALA +SG S RSL++ +G+
Sbjct: 507 TRFLDSVTNDVLVYFQEAAQAFIEEKGNAVDALAAALAHISG-STTIKGRSLLSSLEGFT 565
Query: 251 TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKE 310
LT D+ RG SV+G P E + + DR+ GAVFDLP + K
Sbjct: 566 AFHLTTDTEI-RGKAFVFSVLGHH---LPREVREAVRGIRLQKDRM-GAVFDLPSSMMKT 620
Query: 311 LL-NKQIPPGNTISKITKLPALQDD 334
+ N P ++ KLP LQ++
Sbjct: 621 IKDNWSDTPNLRLTVAEKLPELQEE 645
>gi|118092587|ref|XP_001232052.1| PREDICTED: nucleolar RNA helicase 2 [Gallus gallus]
Length = 713
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/243 (43%), Positives = 156/243 (64%), Gaps = 3/243 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI + + ++ D+I VY+ G+TIVF +TK+DA+E++L +
Sbjct: 347 IGRKTQKAATTVEHLAIECHWSQRAAVIGDVIQVYSGSYGRTIVFCETKKDANELALNAS 406
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E
Sbjct: 407 IKQDCQSLHGDIPQKQREITLKGFRNGAFKVLVATNVAARGLDIPEVDLVVQSSPPKDVE 466
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + +R +E G F+ V P D++++S++
Sbjct: 467 SYIHRSGRTGRAGRTGICICFYQRKEENQLRYVEVKAGITFKRVGVPTATDIIKASSKDA 526
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V ++E+F +AQ LIEEKG +ALAAALA +SG + RSL+N + G+VT
Sbjct: 527 IRCLDSVPQTAIEYFKESAQLLIEEKGPVNALAAALAHISGAT-SIEQRSLLNSDVGFVT 585
Query: 252 LQL 254
+ L
Sbjct: 586 MVL 588
>gi|326923424|ref|XP_003207936.1| PREDICTED: hypothetical protein LOC100542017, partial [Meleagris
gallopavo]
Length = 1461
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/243 (42%), Positives = 157/243 (64%), Gaps = 3/243 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI + + ++ D+I VY+ G+TIVF +TK+DA+E++L +
Sbjct: 1084 IGRRTQKAATTVEHLAIECHWSQRAAVIGDVIQVYSGSHGRTIVFCETKKDANELALNAS 1143
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E
Sbjct: 1144 IKQDCQSLHGDIPQKQREITLKGFRNGAFKVLVATNVAARGLDIPEVDLVVQSSPPKDVE 1203
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + +R +E+ G F+ V P D++++S++
Sbjct: 1204 SYIHRSGRTGRAGRTGICICFYQRKEENQLRYVEQKAGITFKRVGVPTATDIIKASSKDA 1263
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V ++++F +AQ LIEEKG +ALAAALA +SG + RSL+N + G+VT
Sbjct: 1264 IRCLDSVPQSAIDYFKESAQLLIEEKGPVNALAAALAHISGAT-SIEQRSLLNSDVGFVT 1322
Query: 252 LQL 254
+ L
Sbjct: 1323 MIL 1325
>gi|226356665|ref|YP_002786405.1| DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti VCD115]
gi|226318655|gb|ACO46651.1| putative DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti
VCD115]
Length = 602
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 126/319 (39%), Positives = 176/319 (55%), Gaps = 13/319 (4%)
Query: 36 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLN 94
S+ +L+DL+T+Y K IVFT+TKR+ADE++ L + +EALHGD++Q QRER L
Sbjct: 226 SRTRVLADLLTIY-NPEKAIVFTRTKREADELANELIHRGLEAEALHGDLAQSQRERALG 284
Query: 95 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMF 154
FR G+ VLVATDVAARGLDIP VDL++ Y LP DPE++VHRSGRTGRAG+ GTAI+M+
Sbjct: 285 AFRSGRVGVLVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIIMY 344
Query: 155 TSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRL 214
+ R V LER G +F P ++V +SA+ + V F A+RL
Sbjct: 345 GDRENREVMGLERITGVRFIERPLPTPKEVQAASAKTSADMVRKVDSGVAATFQAEAERL 404
Query: 215 IEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFL 274
E G +AL ALA++SG + P + SL++ E+G TL L + MS + L
Sbjct: 405 FSELGLEALTRALAKISGVTEPTKAASLLSGEEGLTTLILHGER------MSIARTVALL 458
Query: 275 SDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNT-ISKITKLPALQD 333
+ +GK+ G V D+P E ++LL G I +LP L +
Sbjct: 459 ARAGDVDTRRLGKVRQWRG----GTVADVPSEYLQKLLAANPLEGEVQIEVAQELPELFE 514
Query: 334 DGPSSDNYGRFSSRDRFSR 352
G + +R +R
Sbjct: 515 QAVRERREGGYQGGNRGTR 533
>gi|357159473|ref|XP_003578458.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Brachypodium
distachyon]
Length = 694
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 124/328 (37%), Positives = 186/328 (56%), Gaps = 21/328 (6%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VGN+ K + +K A+ ++ I+ D+I Y++GG+TI+FT+TK A E+S
Sbjct: 335 VGNEKMKASSSVKHLALPCNRAARSQIIPDIIKCYSRGGRTIIFTETKESASELS---GL 391
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
I S ALHGDI+Q QRE + GFR GKF VLVAT+VAARGLDI +V LII E P D E
Sbjct: 392 IPGSRALHGDIAQAQREVVIAGFRSGKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEA 451
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG G A+++F + +V +ER+ G KFE +S P DV +S+ +
Sbjct: 452 YIHRSGRTGRAGNTGVAVMLFEPRYKYSVTRIERESGVKFEHISAPQPTDVAQSAGNEAA 511
Query: 194 ATLNGVHPESVEFFTPTAQRLI---EEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWV 250
+ V + F A+ L+ D LA ALA+ G++ RSL++ + +
Sbjct: 512 DAIASVSDSVIPVFRQQAEELLSSSSMSAVDLLAKALAKAVGYTD-IKKRSLLSSMENYT 570
Query: 251 TLQL-TRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIH---IIADDRVQGAVFDLPE- 305
TLQL T ++ GF + ++ F+ + D++ +H + AD GAVFD+P
Sbjct: 571 TLQLQTGRPMYTPGF-ALTTLKRFMPE------DKLSDVHGITLTADG--TGAVFDVPSA 621
Query: 306 EIAKELLNKQIPPGNTISKITKLPALQD 333
E+ +L + T+ ++ +LP LQ+
Sbjct: 622 EVQDYILGSENAAMVTLDEVKQLPPLQE 649
>gi|302848249|ref|XP_002955657.1| hypothetical protein VOLCADRAFT_66087 [Volvox carteri f.
nagariensis]
gi|300259066|gb|EFJ43297.1| hypothetical protein VOLCADRAFT_66087 [Volvox carteri f.
nagariensis]
Length = 727
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 115/306 (37%), Positives = 177/306 (57%), Gaps = 12/306 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ + A ++ + + + +L DLIT Y GG+TI+FT +K++A E+S+ L
Sbjct: 321 VGDDKMQAAVTVRHLMLPCSYPQRAGLLKDLITSYGAGGRTIIFTDSKKEAAELSVVLGD 380
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ ++ALHGD++Q RE+TL+GFR+G+F VL+ATDVAARGLD+ ++L++ + P D ET
Sbjct: 381 SLGAQALHGDLAQSMREQTLDGFRKGRFPVLIATDVAARGLDVSGIELVLMVDPPADWET 440
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG GT I + T V +E G KFE + P D+ +AE+ +
Sbjct: 441 YIHRSGRTGRAGSSGTCITLVTKKMEYMVAIIEGRAGMKFERIGAPQPADMARIAAERSL 500
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTD------ALAAALAQLSGFSRPPSSRSLINHEQ 247
A L+ V P VE F A R +EE+ D ALA ALA+++G+ + +RSL+
Sbjct: 501 ALLSEVDPAVVEHFRDAANRHLEEQAADGRDPAEALARALAKITGY-KEMKARSLLTAHD 559
Query: 248 GWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEI 307
TL T + S + F P ++ ++ + AD + GAVFD+P E+
Sbjct: 560 DCTTLLFTCEDHTIESPSSVSVCLCFSVVCNP---QQVKRMTVTADSK--GAVFDVPSEL 614
Query: 308 AKELLN 313
A+ L+
Sbjct: 615 AQTFLD 620
>gi|307109393|gb|EFN57631.1| hypothetical protein CHLNCDRAFT_20835, partial [Chlorella
variabilis]
Length = 608
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 174/313 (55%), Gaps = 15/313 (4%)
Query: 8 FSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEV 67
F+ VG+Q K + ++ + + + I+ DL+ Y G+TI+FT+TK DA+E+
Sbjct: 213 FTTVDLVGSQKMKASTSVRHLLLPCHWSQRSQIVPDLVKCYGVCGRTIIFTETKNDANEL 272
Query: 68 SLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 127
S L + ALHGDI Q QRE TL GFR GKF+VLVATDVAARGLDI V+L+I E
Sbjct: 273 SGTLAESFGARALHGDIPQGQREVTLAGFRSGKFSVLVATDVAARGLDISGVELVIQLEP 332
Query: 128 PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 187
P DPET++HRSGRTGRAG+ G + + + + ++ G KFE V P D+ +
Sbjct: 333 PKDPETYIHRSGRTGRAGQTGICLTLVDRRKEGLIPYIQTKAGLKFERVGAPQPSDMAQL 392
Query: 188 SAEQVVATLNGVHPESVEFFTPTAQRLIEEKGT--DALAAALAQLSGF--SRPPSSRSLI 243
+ E+ + + V + FF AQ+L+E G+ DA+A ALA+++G RP RSL+
Sbjct: 393 AGERALEAVQAVDVSVLPFFRAAAQKLLESVGSPEDAVALALAKITGHVEMRP---RSLL 449
Query: 244 NHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVY--PTAADEIGKIHIIADDRVQGAVF 301
+ + TL+ + V GFL +E ++ + AD GAVF
Sbjct: 450 TAHEDFTTLRFVSPWPVEK----PGQVFGFLRKHMHEEETVEEAKRMTLTADGL--GAVF 503
Query: 302 DLPEEIAKELLNK 314
D+P +AKE L K
Sbjct: 504 DVPTSLAKEFLAK 516
>gi|115470561|ref|NP_001058879.1| Os07g0143700 [Oryza sativa Japonica Group]
gi|113610415|dbj|BAF20793.1| Os07g0143700, partial [Oryza sativa Japonica Group]
Length = 292
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 95/150 (63%), Positives = 118/150 (78%), Gaps = 2/150 (1%)
Query: 39 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQ 98
T+ S L +A GGK IVFTQTKR+AD ++ A+ A +ALHGDISQ+QRERTL+GFR
Sbjct: 6 TLFSTLPQEHANGGKCIVFTQTKREADRLAYAMGRSYACQALHGDISQNQRERTLSGFRD 65
Query: 99 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 158
G+F +LVATDVAARGLDIPNVDL+IHYELPN E FVHRSGRT RAGK+G+AIL++T+ Q
Sbjct: 66 GRFNILVATDVAARGLDIPNVDLVIHYELPNTSELFVHRSGRTARAGKKGSAILIYTNDQ 125
Query: 159 RRTVRSLERDVGCKFEFVSPPVVEDVLESS 188
R VR +E+D+GCKF + P +E E+S
Sbjct: 126 ARAVRIIEQDIGCKFTEL--PKIEVADEAS 153
>gi|168023701|ref|XP_001764376.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684528|gb|EDQ70930.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 689
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 122/322 (37%), Positives = 181/322 (56%), Gaps = 10/322 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG++ K + ++ + + + ++ D+I+ Y GG+ IVFT+TK DA E++ AL S
Sbjct: 325 VGDEKMKASNSVRHLLLPGHYSMRTQLVQDVISCYGSGGRIIVFTETKNDASELAGALKS 384
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
A ALHGDI Q+QRE TL GFR GKF+VLVATDVAARGLDI +V L+I E P D ET
Sbjct: 385 GTA-RALHGDIPQNQREVTLQGFRTGKFSVLVATDVAARGLDINDVQLVIQCEPPRDAET 443
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG G ++L F + V +ER G KFE ++ P D+ ++S
Sbjct: 444 YIHRSGRTGRAGNTGVSVLFFDRKKEYMVPQIERKAGFKFERIAAPQPLDIAKASGNTAT 503
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWV 250
++ V V F A+ L+E G D LA A+A++SG + RSL+
Sbjct: 504 DSVLAVSDTVVPLFRQAAKDLVESSGLPILDILAKAIAKISGQTE-LKRRSLLTSHDDST 562
Query: 251 TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKE 310
TL L +++ + + FL + T +E+ ++++ D + GAVFD+P + E
Sbjct: 563 TLILKANTSMYSPTYAFNCLRKFLPE---TIINEVRRMNLTVDGK--GAVFDVPSKNVDE 617
Query: 311 LLNKQIPPGNTISKITKLPALQ 332
+ +Q T+ + LP LQ
Sbjct: 618 FIAEQEGENFTVEVLDALPELQ 639
>gi|449504709|ref|XP_002190981.2| PREDICTED: nucleolar RNA helicase 2-like [Taeniopygia guttata]
Length = 716
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 115/304 (37%), Positives = 176/304 (57%), Gaps = 16/304 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI + + ++ D+I VY+ G+TIVF +TK++A+E++L +
Sbjct: 350 IGKKTQKAATTVEHLAIECHWSQRAAVIGDVIQVYSGSQGRTIVFCETKKEANELALNAS 409
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E
Sbjct: 410 IKQDCQSLHGDIPQKQREITLKGFRNGSFKVLVATNVAARGLDIPEVDLVVQSSPPKDVE 469
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + +R +E+ G F+ V P D++++S++
Sbjct: 470 SYIHRSGRTGRAGRTGICICFYQRKEEYQLRHVEQKAGITFKRVGVPTATDIIKASSKDA 529
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V ++E+F +AQ LI+EKG +ALAAALA +SG + RSL+N + G+VT
Sbjct: 530 MRCLDSVPQTAIEYFRESAQLLIKEKGPVNALAAALAHISG-ATSIEQRSLLNSDVGFVT 588
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEI----GKIHIIADDRVQGAVFDLPEEI 307
+ L S + R + L D + + GK+ G FD+P
Sbjct: 589 MILRCSEEMSNMSYAWRRLREVLGDDIDRKVNRMCFLKGKM---------GVCFDVPVAD 639
Query: 308 AKEL 311
KE+
Sbjct: 640 QKEI 643
>gi|167386672|ref|XP_001737862.1| ATP-dependent RNA helicase DDX50 [Entamoeba dispar SAW760]
gi|165899191|gb|EDR25838.1| ATP-dependent RNA helicase DDX50, putative [Entamoeba dispar
SAW760]
Length = 689
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 135/376 (35%), Positives = 194/376 (51%), Gaps = 19/376 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VGN ++ + K A SK ++DLI VY + G+TIVF TK + + ++A+
Sbjct: 282 VGNT--QVPKNAKHLACRIFYQSKTQTIADLIRVYGRTGRTIVFCDTKAECTDCAIAINP 339
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
I + LHGDI Q QRE+TLNGFR+ KF VLVATDVAARGLDI VDLII +P D
Sbjct: 340 IFECQQLHGDIQQKQREQTLNGFRENKFNVLVATDVAARGLDISGVDLIIMTHVPKDIPQ 399
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
+VHR+GRT RAGKEGT I +FT + ++ +E + F+ + P + E + +
Sbjct: 400 YVHRAGRTARAGKEGTTITLFTRKELPQLQLIENRIKIHFQRIGTPQKAQIAEVTCGNLP 459
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTD-ALAAALAQLSGFSRPPSSRSLINHEQGWVTL 252
+ V + E F +++L+E + L +A LS S S RSL+ E G TL
Sbjct: 460 EEIKEVPDATAELFRDISKKLLETGDAETVLCKVIASLSTVSNDDSDRSLLQGEPGVKTL 519
Query: 253 QLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELL 312
+ GF + ++G D P+ D++G++++ D V FDLP +IA +LL
Sbjct: 520 -FMETKGTTTGFSGTKFLLGKTLD--PSEIDKLGEVYVYKDHFV---FFDLPTKIANKLL 573
Query: 313 NKQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGAR--GGARGG 370
+ I IT +PA D+ G +S+D G R G R GG R G
Sbjct: 574 KSKSKWSKAIVNIT-VPAY-----FPDDVGIGNSKDPNEERG--RKDSGSLRKDGGDRKG 625
Query: 371 GSMDRRGFRSSRSWGS 386
DRR + +G+
Sbjct: 626 YGNDRRDGGDRKKYGN 641
>gi|403335713|gb|EJY67037.1| DEAD/DEAH box helicase family protein [Oxytricha trifallax]
Length = 972
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/245 (43%), Positives = 155/245 (63%), Gaps = 8/245 (3%)
Query: 16 NQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII 75
N K A+ ++ +I +K + L+DL+ Y G+ IVFTQTK DA+ +L LT I
Sbjct: 370 NLTNKTAKSVQHLSICCPEQNKMSTLADLLICYGGDGRAIVFTQTKVDAN--ALILTDKI 427
Query: 76 AS--EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
E +HGDI Q+QRE TL FR GKF+VLVATDVA+RGLDIPNVDL+I E PN+ ET
Sbjct: 428 KQDIEVMHGDIPQNQREVTLKRFRDGKFSVLVATDVASRGLDIPNVDLVIQVEPPNEVET 487
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRT RAGK G I +T + ++ +E G KF+ + P +DV+ +S++ ++
Sbjct: 488 YIHRSGRTARAGKMGVCITFYTKKSQYMIQQIESQAGIKFKNIGIPSAQDVIRASSKLML 547
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTD---ALAAALAQLSGFSRPP-SSRSLINHEQGW 249
L+ V+ + + +FT A+ LI+ G + AL ALA +SG+ + +RSLI ++
Sbjct: 548 KNLDQVNDQVIPYFTEAAKDLIDMCGGNQEKALCKALAYISGYYKTAFQTRSLITGQERQ 607
Query: 250 VTLQL 254
+TL+L
Sbjct: 608 ITLEL 612
>gi|149511215|ref|XP_001519332.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Ornithorhynchus
anatinus]
Length = 790
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 139/401 (34%), Positives = 212/401 (52%), Gaps = 24/401 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G +K A ++ AI + ++ D+I VY+ G+ IVF +TK+DA E++L
Sbjct: 396 IGKLTQKAATTVEHLAIQCRENQRAAVIGDVIQVYSGNQGRAIVFCETKKDATEMALNSN 455
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ALHGDI+Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 456 IKQEAQALHGDIAQSQREITLKGFRNGVFKVLVATNVAARGLDIPEVDLVIQSSPPKDVE 515
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I F +R +R +E+ G F+ V+ P + D++++S++
Sbjct: 516 SYIHRSGRTGRAGRTGICICFFQPRERCQLRYVEQKSGITFKHVNIPSLVDIIQASSKDA 575
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 252
+++L V E++E F A+ LIEEKG AA + RSLI+ ++G+VT+
Sbjct: 576 ISSLASVPLEALEKFRTYAKTLIEEKGAVEALAAALAHIAGASSFQQRSLISSDKGFVTV 635
Query: 253 QLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLP----EEIA 308
L + + L+ A ++ ++ ++ R G FD+P ++I
Sbjct: 636 ALKCSEELKHTSAAQTELRAKLT---ADLAAQVTRMCLLKGKR--GVCFDVPSAQVDQIK 690
Query: 309 KELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS-RDRFSRG---GGSRFSRGGAR 364
E + + +S +LP L+ D D+ GRFS+ R R G G R +R G R
Sbjct: 691 AEWKDSE---KWKLSLPQQLPELERD---YDDGGRFSNFRQRVQHGNRLGAFRGNRQGNR 744
Query: 365 GGARGG----GSMDRRGFRSSRSWGSDDEDGFSSSRGGRSF 401
G R G G +R GF + +GF + R+F
Sbjct: 745 QGNRMGNHPRGGFNRGGFNRGGFNRGGNRNGFQNGGQKRNF 785
>gi|432852515|ref|XP_004067286.1| PREDICTED: nucleolar RNA helicase 2-like [Oryzias latipes]
Length = 775
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 193/327 (59%), Gaps = 9/327 (2%)
Query: 10 HSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVS 68
H +G + ++ A ++ AI+ + + ++ D+I VY+ G+TI+F +TK++A+E+S
Sbjct: 392 HVDLIGKKTQRAATTVEHLAIACHWSQRAAVIGDVIQVYSGSHGRTIIFCETKKEANELS 451
Query: 69 LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP 128
+ + +S+ LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P
Sbjct: 452 MNASIKQSSQTLHGDIPQKQREITLKGFRNGAFEVLVATNVAARGLDIPEVDLVVQSSPP 511
Query: 129 NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS 188
D E+++HRSGRTGRAG+ G I + + +R +E G F V P D++++S
Sbjct: 512 KDVESYIHRSGRTGRAGRTGVCICFYQRKEEEQLRYVENKAGITFRRVGVPTANDIIKAS 571
Query: 189 AEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQ 247
++ V L+ V ++E+F +A++LIEE+G +ALAAALA +SG + RSL+N +
Sbjct: 572 SKDAVRFLDSVPVTAIEYFKESAEKLIEERGAVEALAAALAHISG-ATSLEQRSLLNSDA 630
Query: 248 GWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEI 307
G+ T+Q+T + R++ L D + + I ++ + G FD+P +
Sbjct: 631 GYTTIQMTCSQEMHNLGYAWRTIKEQLGDEF---ENHIHRMTFLKGK--NGVCFDVPSDK 685
Query: 308 AKELL-NKQIPPGNTISKITKLPALQD 333
KE++ N Q ++ T+LP L++
Sbjct: 686 VKEMMSNWQDGRRWQLTVATELPELEE 712
>gi|301111464|ref|XP_002904811.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262095141|gb|EEY53193.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 681
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 126/343 (36%), Positives = 195/343 (56%), Gaps = 24/343 (6%)
Query: 4 YFVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKR 62
Y + V + D++ + ++ AI + T+L++L+ VYAK +TI+F +TK+
Sbjct: 311 YMKKAEYVNLVKDSDDQASTDVQHIAIPCHWQGRPTLLANLLGVYAKKDSRTIIFAETKK 370
Query: 63 DADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 122
D +E+++ + LHGDI+Q QRE T+ FR+G+ +L+ATDVAARGLD+ NVDL+
Sbjct: 371 DCNELAVHPEIKTDCQVLHGDIAQEQRETTMKAFREGRLRLLIATDVAARGLDM-NVDLV 429
Query: 123 IHYELPN------DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV 176
I+ E P D +T+VHRSGRTGRAGK+G I ++T+ QR + +ER +G KF
Sbjct: 430 INSEPPRKMSGMADVDTYVHRSGRTGRAGKKGICITLYTNRQRDQLNQIERKIGNKFIMK 489
Query: 177 SPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD-ALAAALAQLSGFSR 235
PP ED++++SA + + ++ V P +E F A+ L+E + LAAALA ++G ++
Sbjct: 490 GPPDQEDLIKASAAKALKEIDNVDPSMIEIFQEKARELLETMEPEKCLAAALACITGHTK 549
Query: 236 PPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVM--GFLSDVYPTAADEIGKIHIIAD 293
PP SL++ +VT+ T S F+ A+ + D+ + +I ++ + D
Sbjct: 550 PPRRTSLMSGVPDYVTVLFT-----SSNFIRAKGYVWNAVNRDIPEEISKDIKQMTLTED 604
Query: 294 DRVQGAVFDLPEEIA-KELLNKQIPPG--NTISKITK-LPALQ 332
GA FDLP IA ELL Q+ N I K LP LQ
Sbjct: 605 --AMGACFDLP--IAGLELLETQMEESGMNCPYSIPKTLPKLQ 643
>gi|449667535|ref|XP_002167654.2| PREDICTED: nucleolar RNA helicase 2-like [Hydra magnipapillata]
Length = 685
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 130/404 (32%), Positives = 214/404 (52%), Gaps = 27/404 (6%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G K A ++ I + + ++ D++ +Y+ K GKTI+FT TK++A+E+S+ +
Sbjct: 268 IGEDKNKGATPVQHKVIKCSYWERPLLIKDIMQLYSGKFGKTIIFTTTKQEANELSVE-S 326
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
SI S+ LHGDISQ QRE TL GFR GKF L+ATDVAARGLDIP VDL+I E PND +
Sbjct: 327 SIPDSQVLHGDISQSQREITLQGFRNGKFNCLIATDVAARGLDIPEVDLVIQTEPPNDID 386
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
++HR+GRTGRAG+ G ++ + Q + ++E+ G FE ++PP E+++ S A+
Sbjct: 387 FYIHRAGRTGRAGRSGVCVVFYKPGQESEIAAVEKRTGVTFEKITPPNPEEIVSSCADDA 446
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 252
+ +L V+ + + FF A+ LIE+KG + AA + ++RSL+ +G+ T
Sbjct: 447 IRSLEKVNSDVISFFIKPARELIEKKGAEEALAAALAYVSGTTELANRSLLTSRKGYTTY 506
Query: 253 QLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELL 312
+ + + + + D + + + D++ G VFD+P E K +
Sbjct: 507 LMKQPVQLRNPTLIWNILRRYFDDEFIAGIKGMR----MCQDKL-GCVFDVPTE--KISV 559
Query: 313 NKQIPPGN---TISKITKLPAL-QDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGAR 368
K++ G+ T+ K++KLP L + P + S + R G + +G +
Sbjct: 560 IKEVWKGDRYATLEKLSKLPDLIEYSAPKEYSSETMSLKKNVFRNYGGNY-KGRENNSYQ 618
Query: 369 GGGSM-----------DRRGFRSSRSWGS--DDEDGFSSSRGGR 399
G S + RG +SR S +D + ++ S GG+
Sbjct: 619 HGDSYKGRENSSYQQNNYRGNYNSREIYSKRNDRNSYTKSSGGK 662
>gi|291236621|ref|XP_002738237.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 21-like
[Saccoglossus kowalevskii]
Length = 700
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 123/329 (37%), Positives = 195/329 (59%), Gaps = 25/329 (7%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G Q K A ++ AI + +SD++ VY+ K G+ ++FT+TK+DA+E+ L+ +
Sbjct: 331 IGQQKLKTATTVEHLAIRCHYRQRAATISDVVQVYSGKHGRCMIFTETKKDANEMGLSSS 390
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+ LHGDI+Q+QRE TL GFR GKF LVATDVAARGLDIP VDLI+ E P D E
Sbjct: 391 IRQDVQVLHGDIAQNQREITLKGFRDGKFRCLVATDVAARGLDIPEVDLIVMCEPPKDAE 450
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
++HRSGRTGRAG+ G ++ + ++ ++ +ER G KF V P ED++++SA+
Sbjct: 451 NYIHRSGRTGRAGRTGVSVCFYKPNEEHVLKLIERRAGIKFRRVGAPQPEDIIKTSADDA 510
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L+ V +++ F A++LIEEKG +ALAAALA +SG + +SRSL+N ++G+ T
Sbjct: 511 LKSLDAVPESAIKLFHEAAEKLIEEKGPVEALAAALALVSG-ATDVTSRSLLNSDEGYTT 569
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGK--------IHIIADDRVQGAVFDL 303
S ++ M LS V+ ++I + + + + + AVFD+
Sbjct: 570 Y-----------IFSCQTEMRALSYVWRALGNQIPEDVKEKFRGMRMCTN--TKSAVFDV 616
Query: 304 PEEIAKELLNKQIPP-GNTISKITKLPAL 331
P ++ +L + + G T+ + LP +
Sbjct: 617 PNDVIPKLESHWVNRWGCTLEQAQHLPDI 645
>gi|297787958|ref|XP_002862173.1| hypothetical protein ARALYDRAFT_333427 [Arabidopsis lyrata subsp.
lyrata]
gi|297307387|gb|EFH38431.1| hypothetical protein ARALYDRAFT_333427 [Arabidopsis lyrata subsp.
lyrata]
Length = 283
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 93/142 (65%), Positives = 112/142 (78%)
Query: 41 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGK 100
++ L+ +AKGGK IVFTQTKRDAD +S AL EALHGDISQ QRERTL GFR G
Sbjct: 1 MTFLVQEHAKGGKCIVFTQTKRDADRLSYALARSFKCEALHGDISQSQRERTLAGFRDGH 60
Query: 101 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 160
F +LVATDVAARGLD+PNVDLIIHYELPN+ ETFVHR+GRTGRAGK+G+AIL+++ Q R
Sbjct: 61 FKILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSR 120
Query: 161 TVRSLERDVGCKFEFVSPPVVE 182
V+ +ER+VG +F + VE
Sbjct: 121 AVKIIEREVGSRFTELPSIAVE 142
>gi|345798963|ref|XP_851746.2| PREDICTED: nucleolar RNA helicase 2 [Canis lupus familiaris]
Length = 785
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 144/402 (35%), Positives = 217/402 (53%), Gaps = 38/402 (9%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S ++
Sbjct: 402 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNVS 461
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 462 IRQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVE 521
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 522 SYIHRSGRTGRAGRTGICICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDA 581
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT
Sbjct: 582 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSDAGFVT 640
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRV---------QGAVFD 302
+ + M +S + +++G+ D +V QG FD
Sbjct: 641 M-----------ILRCSIEMPNISYAWKELKEQLGE---DIDSKVKGMVFLKGKQGVCFD 686
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRG 361
+P E+ K +S T+ P L +GP + Y F + SR GSR R
Sbjct: 687 VPTAALTEIQEKWHDSRRWQLSVATEQPEL--EGP-REGYRNFRGQREGSR--GSRGQRE 741
Query: 362 GARG--GARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSF 401
G+RG G R G R FR RS G + + F + RSF
Sbjct: 742 GSRGFRGQREGN----RSFRGQRSRGGNKNNRFQNKGQKRSF 779
>gi|428186550|gb|EKX55400.1| hypothetical protein GUITHDRAFT_57670, partial [Guillardia theta
CCMP2712]
Length = 513
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 115/302 (38%), Positives = 174/302 (57%), Gaps = 11/302 (3%)
Query: 15 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 73
G Q ++ A I+ I S+ + D++ YA GKTI+FT+TK++A+E LAL
Sbjct: 217 GQQGQETATRIEHLCIPCPWNSRARTIGDIVLCYAGSHGKTIIFTETKKEANE--LALDD 274
Query: 74 IIASEA--LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 131
I + LHGDI+Q QRE T FR GKF LVATDVAARGLDIP VDL+I D
Sbjct: 275 AIKQDCAVLHGDIAQAQRETTFQAFRDGKFRCLVATDVAARGLDIPEVDLVIMCHPTKDA 334
Query: 132 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 191
+T+VHRSGRTGRAG+ G A+ FT + +R++E + K +S P E++++++A
Sbjct: 335 DTYVHRSGRTGRAGRSGVAVTFFTPREMHQLRAIEWRIKTKMRQISAPQPEEIVKANARD 394
Query: 192 VVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWV 250
+ ++ VH + + F TA+ +I++ G T AL AALA ++G ++P +RSL++ +G+
Sbjct: 395 IKLSVEEVHSDVLPLFEKTAEEMIQDMGATKALCAALAVIAGQTKPLPARSLLSSLEGFK 454
Query: 251 TLQLTRDSAFSRGFMSARSVMGFLSDVYPT-AADEIGKIHIIADDRVQGAVFDLPEEIAK 309
T + ++ +R V L V P I I + + V GA FD+P++ +
Sbjct: 455 TFVIKT----TQPMAESRMVFVLLRKVLPQELVSSIKGIRLFKEQPVMGAAFDVPQDKVE 510
Query: 310 EL 311
E
Sbjct: 511 EF 512
>gi|348685693|gb|EGZ25508.1| hypothetical protein PHYSODRAFT_326516 [Phytophthora sojae]
Length = 962
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 186/316 (58%), Gaps = 19/316 (6%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALT 72
V + D++ + ++ AI + T+L++L+ VYAK +TI+F +TK+D +E+++
Sbjct: 316 VKDSDDQASTDVQHIAIPCHWQGRPTLLANLLGVYAKKDSRTIIFAETKKDCNELAVHPE 375
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN--- 129
+ LHGDI+Q QRE T+ FR+G+ +L+ATDVAARGLD+ NVDL+I+ E P
Sbjct: 376 IKTDCQVLHGDIAQEQRETTMKAFREGRLRLLIATDVAARGLDM-NVDLVINSEPPRKMS 434
Query: 130 ---DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 186
D +T+VHRSGRTGRAGK+G I ++T+ QR + +ER +G KF PP ED+++
Sbjct: 435 GMADVDTYVHRSGRTGRAGKKGICITLYTNRQRDQLTQIERKIGNKFIMKGPPDQEDLIK 494
Query: 187 SSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD-ALAAALAQLSGFSRPPSSRSLINH 245
+SA + + +N V P +E F A L+ + + LAAALA ++G ++PP SL++
Sbjct: 495 ASAAKALTEINNVDPSMIEIFQEKAAELLGQMDPEKCLAAALACITGHTKPPRRTSLMSG 554
Query: 246 EQGWVTLQLTRDSAFSRGFMSARSVM--GFLSDVYPTAADEIGKIHIIADDRVQGAVFDL 303
+VT+ T S F+ A+ + D+ A++I ++ + D GA FDL
Sbjct: 555 VPDYVTVLFT-----SSNFIRAKGYVWNAVNRDIPENFANDIKQLTLTEDS--MGACFDL 607
Query: 304 PEEIAKELLNKQIPPG 319
P A E++ K I G
Sbjct: 608 PIG-ALEIVEKLIEEG 622
>gi|386857046|ref|YP_006261223.1| DEAD/DEAH box helicase [Deinococcus gobiensis I-0]
gi|380000575|gb|AFD25765.1| DEAD/DEAH box helicase-like protein [Deinococcus gobiensis I-0]
Length = 599
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 123/298 (41%), Positives = 171/298 (57%), Gaps = 13/298 (4%)
Query: 36 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLN 94
S+ +L+DL+TVY K IVFT+TKR+ADE++ L I SEALHGD++Q QRER L
Sbjct: 226 SRTRVLADLLTVY-NPEKAIVFTRTKREADELANELIHRGIESEALHGDLAQTQRERALG 284
Query: 95 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMF 154
FR G+ VLVATDVAARGLDIP VDL++ Y LP DPE++VHRSGRTGRAG+ GTAI+M+
Sbjct: 285 AFRSGRVGVLVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIIMY 344
Query: 155 TSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRL 214
R + LER G +F P ++V +SA + V + + F A+RL
Sbjct: 345 GDRDGREMSGLERITGVRFTERPLPTPKEVASASARSSADLVRRVDSGAAQGFQEEAERL 404
Query: 215 IEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFL 274
E G +AL ALA++SG + P + SL++ E+G TL L + +S + L
Sbjct: 405 FSELGLEALTRALAKISGVTEPAKAASLLSGEEGLTTLILHGER------LSVPRTVAVL 458
Query: 275 SDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITK-LPAL 331
+ +GK+ G V D+P E ++LL G+ ++ + LP L
Sbjct: 459 ARGSDVDTRRLGKVRQWRG----GTVADVPSEYVEKLLAANPLEGDIQVEVAQELPEL 512
>gi|154332025|ref|XP_001561829.1| putative nucleolar RNA helicase II [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134059150|emb|CAM36848.1| putative nucleolar RNA helicase II [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 689
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/320 (35%), Positives = 178/320 (55%), Gaps = 10/320 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALT 72
VG + + A IK Y + ++L+DLI VY+ G+T+VFT TK+D ++S+ T
Sbjct: 303 VGKEAVRTASTIKFYRRKCNFSEISSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINNT 362
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+ S+ LHGD+ Q QRE T+ FR KF+VL+ATDVAARGLD+P VDL+I P+D +
Sbjct: 363 KL-DSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDID 421
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
F+HR+GRTGRAG++G +L++ + V +ER KF+ + P E++L++ A
Sbjct: 422 AFIHRAGRTGRAGRKGVCVLLYQPREEYVVERIERHAKMKFDVLPAPTREEILKAVARDA 481
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
L V + F A L+++ + LA+ALA +SG++ ++R LI G+VT
Sbjct: 482 AEDLARVERRATNLFMEQAAELLKDADPVEILASALAVMSGYTSNITTRGLITGTPGYVT 541
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+Q+T D + D + D I ++ DD G VFD+ E+ A+ +
Sbjct: 542 VQMTSDRPLPIPVYCSILRNNLGDDTFMRCRD----ITLLQDD--PGCVFDVLEQFAESV 595
Query: 312 LNKQIPPGNTISKITKLPAL 331
+N + G T +I LP +
Sbjct: 596 MNTPM-RGITFQRIESLPPI 614
>gi|37748194|gb|AAH59237.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Mus musculus]
Length = 851
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 139/398 (34%), Positives = 213/398 (53%), Gaps = 45/398 (11%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK+DA E+S
Sbjct: 472 IGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTC 531
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E
Sbjct: 532 IKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVE 591
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + + +E+ G KF+ + P +++++S++
Sbjct: 592 SYIHRSGRTGRAGRTGVCICFYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDA 651
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT
Sbjct: 652 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSQAGFVT 710
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G V FD
Sbjct: 711 M-----------ILRCSIEMPNISYAWKELKEQLGE---SIDAKVKGMVFLKGKLGVCFD 756
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRD------RFSRGGG 355
+ E E+ K + ++ T+ P L +GP GR RD R RGG
Sbjct: 757 VRTEAVTEIQEKWHDSRHWQLTVATEQPEL--EGPPDGYRGRMGQRDGSRGAFRGQRGGS 814
Query: 356 SRFSRGGARGGAR--------GGGSMDRRGFRSSRSWG 385
F G RGG+R GG +R F S+++G
Sbjct: 815 RNFRGQGQRGGSRNFRGQRPGGGNRGQKRSF--SKAFG 850
>gi|187960121|ref|NP_001120807.1| nucleolar RNA helicase 2 [Danio rerio]
gi|169642686|gb|AAI60629.1| Ddx21 protein [Danio rerio]
Length = 759
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 127/334 (38%), Positives = 192/334 (57%), Gaps = 21/334 (6%)
Query: 8 FSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADE 66
F H +G + +K A ++ AI+ + + +++ D+I VY+ G+TIVF +TK++A E
Sbjct: 374 FIHVDLIGKKTQKAATTVEHLAIACHWSQRASVIGDVIQVYSGSHGRTIVFCETKKEATE 433
Query: 67 VSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE 126
+SL + ++++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I
Sbjct: 434 LSLNTSIKQSAQSLHGDIPQKQREVTLKGFRNGSFEVLVATNVAARGLDIPEVDLVIQSS 493
Query: 127 LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 186
PND E+++HRSGRTGRAG+ G I + + ++ +E+ G F+ V P D+++
Sbjct: 494 PPNDVESYIHRSGRTGRAGRTGICICFYQRKEESQLKFVEQKAGITFKRVGVPTAYDIIQ 553
Query: 187 SSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINH 245
SS++ V L+ V +V +F AQ LI+++G +ALAAALA +SG + RSLIN
Sbjct: 554 SSSKDAVRFLDSVPAVAVGYFREAAQELIQQRGAVEALAAALAHISG-ATSLEQRSLINS 612
Query: 246 EQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGK------IHIIADDRVQGA 299
E G FS +S M +S + +++G+ H++ +G
Sbjct: 613 EPG-----------FSSMILSCSQEMHSISFAWRGLKEQLGEEIDQHISHMVFIKGKKGV 661
Query: 300 VFDLPEEIAKELLNK-QIPPGNTISKITKLPALQ 332
FD+P KE+ K Q T+S T+LP L+
Sbjct: 662 CFDVPVSKLKEVQEKWQDSRRWTLSTATQLPELE 695
>gi|125606362|gb|EAZ45398.1| hypothetical protein OsJ_30047 [Oryza sativa Japonica Group]
Length = 685
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 182/327 (55%), Gaps = 19/327 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG++ K + ++ A+ ++ ++ D+I Y++GG+TI+FT+TK A ++S
Sbjct: 321 VGDEKLKASASVRHLALPCNRAARAQVIPDIIRCYSRGGRTIIFTETKESASDLS---GL 377
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
I S ALHGD++Q QRE L GFR GKF VLVAT+VAARGLDI +V LII E P D E
Sbjct: 378 IAGSRALHGDVAQAQREVILAGFRSGKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEA 437
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG G A+++F + V +ER+ G KFE +S P DV +S+ +
Sbjct: 438 YIHRSGRTGRAGNTGVAVMLFEPRYKFNVNRIERESGVKFEHISAPQPTDVAQSAGTEAA 497
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWV 250
++ V + F A++L+ G D LA ALA+ G++ RSL++
Sbjct: 498 EAISSVSDSVIPVFREQAEQLLNSSGMSAVDLLAKALAKAVGYT-DIKKRSLLSSMDNHT 556
Query: 251 TLQL-TRDSAFSRGFMSARSVMGFLSDVYPT--AADEIGKIHIIADDRVQGAVFDLPE-E 306
TL L T S ++ GF V+ L P AD G I I AD GAVFD+P E
Sbjct: 557 TLLLQTGRSVYAAGF-----VLSTLKRFMPEERLADVKG-ITITADG--TGAVFDVPSAE 608
Query: 307 IAKELLNKQIPPGNTISKITKLPALQD 333
+ + Q T+ ++ +LP LQ+
Sbjct: 609 VEDYIQGAQNAAMVTVEEVKQLPPLQE 635
>gi|16975510|gb|AAD43959.3|AF159131_1 nucleolar RNA helicase II/Gu [Mus musculus]
Length = 851
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 139/398 (34%), Positives = 212/398 (53%), Gaps = 45/398 (11%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK+DA E+S
Sbjct: 472 IGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTC 531
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E
Sbjct: 532 IKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVE 591
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + + +E+ G KF+ + P +++++S++
Sbjct: 592 SYIHRSGRTGRAGRTGVCICFYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDA 651
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT
Sbjct: 652 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSQAGFVT 710
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G V FD
Sbjct: 711 M-----------ILRCSIEMPNISYAWKELKEQLGE---SIDAKVKGMVFLKGKLGVCFD 756
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRD------RFSRGGG 355
+ E E+ K ++ T+ P L +GP GR RD R RGG
Sbjct: 757 VRTEAVTEIQEKWHDSRRWQLTVATEQPEL--EGPQDGYRGRMGQRDGSRGAFRGQRGGS 814
Query: 356 SRFSRGGARGGAR--------GGGSMDRRGFRSSRSWG 385
F G RGG+R GG +R F S+++G
Sbjct: 815 RNFRGQGQRGGSRNFRGQRPGGGNRGQKRSF--SKAFG 850
>gi|7385089|gb|AAF61690.1|AF220365_1 nucleolar RNA helicase II/Gu [Mus musculus]
gi|148700138|gb|EDL32085.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_a [Mus
musculus]
Length = 805
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 139/398 (34%), Positives = 212/398 (53%), Gaps = 45/398 (11%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK+DA E+S
Sbjct: 426 IGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTC 485
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E
Sbjct: 486 IKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVE 545
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + + +E+ G KF+ + P +++++S++
Sbjct: 546 SYIHRSGRTGRAGRTGVCICFYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDA 605
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT
Sbjct: 606 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSQAGFVT 664
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G V FD
Sbjct: 665 M-----------ILRCSIEMPNISYAWKELKEQLGE---SIDAKVKGMVFLKGKLGVCFD 710
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRD------RFSRGGG 355
+ E E+ K ++ T+ P L +GP GR RD R RGG
Sbjct: 711 VRTEAVTEIQEKWHDSRRWQLTVATEQPEL--EGPPDGYRGRMGQRDGSRGAFRGQRGGS 768
Query: 356 SRFSRGGARGGAR--------GGGSMDRRGFRSSRSWG 385
F G RGG+R GG +R F S+++G
Sbjct: 769 RNFRGQGQRGGSRNFRGQRPGGGNRGQKRSF--SKAFG 804
>gi|21410145|gb|AAH30895.1| Ddx21 protein, partial [Mus musculus]
Length = 689
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 139/398 (34%), Positives = 212/398 (53%), Gaps = 45/398 (11%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK+DA E+S
Sbjct: 310 IGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTC 369
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E
Sbjct: 370 IKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVE 429
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + + +E+ G KF+ + P +++++S++
Sbjct: 430 SYIHRSGRTGRAGRTGVCICFYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDA 489
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT
Sbjct: 490 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSQAGFVT 548
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G V FD
Sbjct: 549 M-----------ILRCSIEMPNISYAWKELKEQLGE---SIDAKVKGMVFLKGKLGVCFD 594
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRD------RFSRGGG 355
+ E E+ K ++ T+ P L +GP GR RD R RGG
Sbjct: 595 VRTEAVTEIQEKWHDSRRWQLTVATEQPEL--EGPPDGYRGRMGQRDGSRGAFRGQRGGS 652
Query: 356 SRFSRGGARGGAR--------GGGSMDRRGFRSSRSWG 385
F G RGG+R GG +R F S+++G
Sbjct: 653 RNFRGQGQRGGSRNFRGQRPGGGNRGQKRSF--SKAFG 688
>gi|167515852|ref|XP_001742267.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778891|gb|EDQ92505.1| predicted protein [Monosiga brevicollis MX1]
Length = 591
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 121/336 (36%), Positives = 188/336 (55%), Gaps = 15/336 (4%)
Query: 3 NYFVMFSHST--QVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQ 59
NY M +H T VG+ + ++G+ AI T +R +++D++ +Y+ G+TI+FTQ
Sbjct: 199 NY--MPNHVTVDTVGSSRNRTSKGVDHLAIKCPWTERRAVIADVVQMYSGAHGRTIIFTQ 256
Query: 60 TKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 119
TK+DA+E++L + LHGDI Q QRE +L FR GK LVATDVAARGLDIP V
Sbjct: 257 TKKDANELALETDLRQEVQVLHGDIPQKQREMSLQAFRDGKVRCLVATDVAARGLDIPEV 316
Query: 120 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 179
DL++ E P D E+++HRSGRTGRAG+ GT I + +Q +R +ER G F + P
Sbjct: 317 DLVVQCEPPKDVESYIHRSGRTGRAGRTGTCICFYKPNQEDAMRYVERRAGISFRRIGAP 376
Query: 180 VVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
EDV+++SA +L ++ + F A+ LIEE+G +A AA + +
Sbjct: 377 QPEDVIKASARDAFRSLEAINDSVLAHFKDAARELIEERGAEAALAAALAHISGATEIKT 436
Query: 240 RSLINHEQGWVTLQLTRDSAF-SRGFMSARSVMGFLSDVYPT-AADEIGKIHIIADDRVQ 297
RSL++ + TL + ++ ++GF V + +P A +EI + + D Q
Sbjct: 437 RSLLSSMADYTTLHIKVETEIRTKGF-----VWTLIRKYFPEDAHNEIKGLRLQKDK--Q 489
Query: 298 GAVFDLPEEIAKELLNK-QIPPGNTISKITKLPALQ 332
G+VFD+P ++ ++ P T+ +LP L+
Sbjct: 490 GSVFDVPTKMVDGIMAAWNDSPTVTMEVCKELPELE 525
>gi|115480217|ref|NP_001063702.1| Os09g0520700 [Oryza sativa Japonica Group]
gi|75322251|sp|Q650T9.1|RH7_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 7
gi|52076165|dbj|BAD46678.1| putative RNA helicase [Oryza sativa Japonica Group]
gi|113631935|dbj|BAF25616.1| Os09g0520700 [Oryza sativa Japonica Group]
Length = 696
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 127/328 (38%), Positives = 184/328 (56%), Gaps = 21/328 (6%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG++ K + ++ A+ ++ ++ D+I Y++GG+TI+FT+TK A + L+
Sbjct: 332 VGDEKLKASASVRHLALPCNRAARAQVIPDIIRCYSRGGRTIIFTETKESASD----LSG 387
Query: 74 IIA-SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+IA S ALHGD++Q QRE L GFR GKF VLVAT+VAARGLDI +V LII E P D E
Sbjct: 388 LIAGSRALHGDVAQAQREVILAGFRSGKFLVLVATNVAARGLDINDVQLIIQCEPPRDVE 447
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
++HRSGRTGRAG G A+++F + V +ER+ G KFE +S P DV +S+ +
Sbjct: 448 AYIHRSGRTGRAGNTGVAVMLFEPRYKFNVNRIERESGVKFEHISAPQPTDVAQSAGTEA 507
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGW 249
++ V + F A++L+ G D LA ALA+ G++ RSL++
Sbjct: 508 AEAISSVSDSVIPVFREQAEQLLNSSGMSAVDLLAKALAKAVGYTD-IKKRSLLSSMDNH 566
Query: 250 VTLQL-TRDSAFSRGFMSARSVMGFLSDVYPT--AADEIGKIHIIADDRVQGAVFDLPE- 305
TL L T S ++ GF V+ L P AD G I I AD GAVFD+P
Sbjct: 567 TTLLLQTGRSVYAAGF-----VLSTLKRFMPEERLADVKG-ITITADG--TGAVFDVPSA 618
Query: 306 EIAKELLNKQIPPGNTISKITKLPALQD 333
E+ + Q T+ ++ +LP LQ+
Sbjct: 619 EVEDYIQGAQNAAMVTVEEVKQLPPLQE 646
>gi|157863878|ref|XP_001687490.1| putative nucleolar RNA helicase II [Leishmania major strain
Friedlin]
gi|68223701|emb|CAJ01930.1| putative nucleolar RNA helicase II [Leishmania major strain
Friedlin]
Length = 674
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 113/321 (35%), Positives = 179/321 (55%), Gaps = 10/321 (3%)
Query: 13 QVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLAL 71
VG + + A IK Y + ++L+DLI VY+ G+T+VFT TK+D ++S+
Sbjct: 302 MVGKEAVRTASTIKFYRRKCNFSEISSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINN 361
Query: 72 TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 131
T + S+ LHGD+ Q QRE T+ FR KF+VL+ATDVAARGLD+P VDL+I P+D
Sbjct: 362 TKL-DSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDI 420
Query: 132 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 191
+ F+HR+GRTGRAG++G +L++ + V +ER KF+ + P E++L++ A
Sbjct: 421 DAFIHRAGRTGRAGRKGVCVLLYQPREEYVVERIERHAKMKFDVLPAPTREEILKAVARD 480
Query: 192 VVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWV 250
L V + + F A L+++ + LA+ALA +SG++ ++R LI G+V
Sbjct: 481 AAEDLARVERRATDLFMEQAAELLKDADPVEILASALAVMSGYTSNITARGLITGTPGYV 540
Query: 251 TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKE 310
T+Q+T D + D + D I ++ DD G VFD+ E+ A+
Sbjct: 541 TVQMTSDRPLPVPVYCSILRNNLGDDTFMRCRD----ITLLQDD--PGCVFDVLEQFAER 594
Query: 311 LLNKQIPPGNTISKITKLPAL 331
+++ + G T +I LP +
Sbjct: 595 VMSTPM-RGITFQRIEALPPI 614
>gi|72384374|ref|NP_062426.2| nucleolar RNA helicase 2 [Mus musculus]
gi|341940509|sp|Q9JIK5.3|DDX21_MOUSE RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
protein 21; AltName: Full=Gu-alpha; AltName:
Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
RNA helicase II; AltName: Full=RH II/Gu
gi|74213643|dbj|BAE35625.1| unnamed protein product [Mus musculus]
gi|112180476|gb|AAH43655.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Mus musculus]
gi|148700139|gb|EDL32086.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Mus
musculus]
Length = 851
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 139/398 (34%), Positives = 212/398 (53%), Gaps = 45/398 (11%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK+DA E+S
Sbjct: 472 IGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTC 531
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E
Sbjct: 532 IKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVE 591
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + + +E+ G KF+ + P +++++S++
Sbjct: 592 SYIHRSGRTGRAGRTGVCICFYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDA 651
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT
Sbjct: 652 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSQAGFVT 710
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G V FD
Sbjct: 711 M-----------ILRCSIEMPNISYAWKELKEQLGE---SIDAKVKGMVFLKGKLGVCFD 756
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRD------RFSRGGG 355
+ E E+ K ++ T+ P L +GP GR RD R RGG
Sbjct: 757 VRTEAVTEIQEKWHDSRRWQLTVATEQPEL--EGPPDGYRGRMGQRDGSRGAFRGQRGGS 814
Query: 356 SRFSRGGARGGAR--------GGGSMDRRGFRSSRSWG 385
F G RGG+R GG +R F S+++G
Sbjct: 815 RNFRGQGQRGGSRNFRGQRPGGGNRGQKRSF--SKAFG 850
>gi|301108607|ref|XP_002903385.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262097757|gb|EEY55809.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 666
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 132/401 (32%), Positives = 204/401 (50%), Gaps = 21/401 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ D + + AI + + +L +++ ++A G+T+VFT+TK++ADE++ +L
Sbjct: 266 VGDNDNHVPATVAHKAILAPSRDRIQVLENVLRLHAHDGQTLVFTETKQEADEIANSLPG 325
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
A ALHGD+SQ R T+NGFR G LV TD+AARGLDI NV+L++ Y LP+D E+
Sbjct: 326 QDA-RALHGDLSQGMRTSTMNGFRNGHVKTLVCTDIAARGLDIANVELVVQYRLPSDKES 384
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHR+GRTGRAG+ GT I+ F + V ER KF +PP E ++ + E V
Sbjct: 385 FVHRAGRTGRAGRSGTNIVFFDRNDTSDVLDFERRYKFKFAHAAPPRPEQMMTGALEDVN 444
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGF-SRPPSSRSLINHEQGWVTL 252
L+ + + + F AQ +IE++G L+AALA L GF S+ +S S++ T+
Sbjct: 445 KQLSSLPKANAQLFDEAAQAMIEQQGPGVLSAALALLCGFDSKKLTSLSMLTGRHRMQTV 504
Query: 253 QLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPE---EIAK 309
++ G +AR + L+ D IH + ++ VFD+P+ E +
Sbjct: 505 EV-------EGVQNARDLNRLLASFMDDRVD----IHPVEGGKL---VFDIPQGKIEALQ 550
Query: 310 ELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSR-FSRGGARGGA 367
L P +++ + P L D +N + SR FS
Sbjct: 551 AHLTASSPDEEVSVTTAVEFPRLVVDRAGRNNNNFGGRFGQRGGRNNSRGFSNNRFGNNR 610
Query: 368 RGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNNRG 408
R GG+ G + +W +D DG + GGR F S ++G
Sbjct: 611 REGGNNRFGGNKGDNNWKRNDRDGGNRRNGGRDFDSSFSKG 651
>gi|26368308|dbj|BAB26817.2| unnamed protein product [Mus musculus]
Length = 832
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 139/398 (34%), Positives = 212/398 (53%), Gaps = 45/398 (11%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK+DA E+S
Sbjct: 453 IGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTC 512
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E
Sbjct: 513 IKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVE 572
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + + +E+ G KF+ + P +++++S++
Sbjct: 573 SYIHRSGRTGRAGRTGVCICFYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDA 632
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT
Sbjct: 633 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSQAGFVT 691
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G V FD
Sbjct: 692 M-----------ILRCSIEMPNISYAWKELKEQLGE---SIDAKVKGMVFLKGKLGVCFD 737
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRD------RFSRGGG 355
+ E E+ K ++ T+ P L +GP GR RD R RGG
Sbjct: 738 VRTEAVTEIQEKWHDSRRWQLTVATEQPEL--EGPPDGYRGRMGQRDGSRGAFRGQRGGS 795
Query: 356 SRFSRGGARGGAR--------GGGSMDRRGFRSSRSWG 385
F G RGG+R GG +R F S+++G
Sbjct: 796 RNFRGQGQRGGSRNFRGQRPGGGNRGQKRSF--SKAFG 831
>gi|125564407|gb|EAZ09787.1| hypothetical protein OsI_32075 [Oryza sativa Indica Group]
Length = 685
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 182/327 (55%), Gaps = 19/327 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG++ K + ++ A+ ++ ++ D+I Y++GG+TI+FT+TK A ++S
Sbjct: 321 VGDEKLKASASVRHLALPCNRAARAQVIPDIIRCYSRGGRTIIFTETKESASDLS---GL 377
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
I S ALHGD++Q QRE L GFR GKF VLVAT+VAARGLDI +V LII E P D E
Sbjct: 378 IAGSRALHGDVAQAQREVILAGFRSGKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEA 437
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG G A+++F + V +ER+ G KFE +S P DV +S+ +
Sbjct: 438 YIHRSGRTGRAGNTGVAVMLFEPRYKFNVNRIERESGVKFEHISAPQPTDVAQSAGTEAA 497
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWV 250
++ V + F A++L+ G D LA ALA+ G++ RSL++
Sbjct: 498 EAISSVSDSVIPVFREQAEQLLNSSGMSAVDLLAKALAKAVGYT-DIKKRSLLSSMDNHT 556
Query: 251 T-LQLTRDSAFSRGFMSARSVMGFLSDVYPT--AADEIGKIHIIADDRVQGAVFDLPE-E 306
T L LT S ++ GF V+ L P AD G I I AD GAVFD+P E
Sbjct: 557 TLLLLTGRSVYAAGF-----VLSTLKRFMPEERLADVKG-ITITADG--TGAVFDVPSAE 608
Query: 307 IAKELLNKQIPPGNTISKITKLPALQD 333
+ + Q T+ ++ +LP LQ+
Sbjct: 609 VEDYIQGAQNAAMVTVEEVKQLPPLQE 635
>gi|401414811|ref|XP_003871902.1| putative nucleolar RNA helicase II [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488123|emb|CBZ23369.1| putative nucleolar RNA helicase II [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 684
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 113/321 (35%), Positives = 178/321 (55%), Gaps = 10/321 (3%)
Query: 13 QVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLAL 71
VG + + A IK Y + ++L+DLI VY+ G+T+VFT TK+D ++S+
Sbjct: 302 MVGKEAVRTASTIKFYRRKCNFSEISSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINN 361
Query: 72 TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 131
T + S+ LHGD+ Q QRE T+ FR KF+VL+ATDVAARGLD+P VDL+I P D
Sbjct: 362 TKL-DSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDI 420
Query: 132 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 191
+ F+HR+GRTGRAG++G +L++ + V +ER KF+ + P E++L++ A
Sbjct: 421 DAFIHRAGRTGRAGRKGVCVLLYQPREEYVVERIERHAKMKFDVLPAPTREEILKAVARD 480
Query: 192 VVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWV 250
L V + F A L+++ + LA+ALA +SG++ ++R LI G+V
Sbjct: 481 AAEDLARVERRATNLFMDQAAELLKDADPVEILASALAVMSGYTSNITTRGLITGTPGYV 540
Query: 251 TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKE 310
T+Q+T D + D++ D I ++ DD G VFD+ E+ A+
Sbjct: 541 TVQMTSDRPLPVPVYCSILRNNLGDDMFMRCRD----ITLLQDD--PGCVFDVLEQFAER 594
Query: 311 LLNKQIPPGNTISKITKLPAL 331
+++ + G T +I LP +
Sbjct: 595 VMSTPM-RGITFQRIETLPPI 614
>gi|194376400|dbj|BAG62959.1| unnamed protein product [Homo sapiens]
Length = 711
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 132/359 (36%), Positives = 200/359 (55%), Gaps = 25/359 (6%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 351 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 410
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 411 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 470
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 471 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 530
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 531 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 589
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS A +I ++ ++ + G FD+P ++ L
Sbjct: 590 MTLESLEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERL 644
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGAR 368
+ +S KLP +++ DG +S N SR SR G+R G+R
Sbjct: 645 QAEWHDSDWILSVPAKLPEIEEYYDGNTSSN---------------SRQSRQGSRSGSR 688
>gi|291404256|ref|XP_002718616.1| PREDICTED: nucleolar protein GU2-like [Oryctolagus cuniculus]
Length = 780
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 139/388 (35%), Positives = 213/388 (54%), Gaps = 38/388 (9%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI + + ++ D+I VY+ G+TIVF +TK++A E+S +
Sbjct: 398 IGKKTQKTAITVEHLAIKCHWSQRAAVIGDVIRVYSGHQGRTIVFCETKKEAQELSQNSS 457
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E
Sbjct: 458 IKQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSCPPKDVE 517
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 518 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDA 577
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT
Sbjct: 578 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSDAGFVT 636
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +++G V FD
Sbjct: 637 M-----------ILRCSIEMPNISYAWKELKEQLGE---DVDSKIKGMVFLKGKLGVCFD 682
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRG 361
+P E+ K +S T+ P L +GP + YG F + SR G R RG
Sbjct: 683 VPTAAVTEIQEKWHDSRRWQLSVATEQPEL--EGP-REGYGAFRGQRDGSR--GFRGQRG 737
Query: 362 GARG--GARGGGSMDRRGFRSSRSWGSD 387
G+RG G R G RGFR R+ G +
Sbjct: 738 GSRGFRGQRDGS----RGFRGQRAGGGN 761
>gi|398010006|ref|XP_003858201.1| nucleolar RNA helicase II, putative [Leishmania donovani]
gi|322496407|emb|CBZ31477.1| nucleolar RNA helicase II, putative [Leishmania donovani]
Length = 678
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/325 (35%), Positives = 181/325 (55%), Gaps = 18/325 (5%)
Query: 13 QVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLAL 71
VG + + A IK Y + ++L+DLI VY+ G+T+VFT TK+D ++S+
Sbjct: 302 MVGKEAVRTASTIKFYRRKCNFSEISSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINN 361
Query: 72 TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 131
T + S+ LHGD+ Q QRE T+ FR KF+VL+ATDVAARGLD+P VDL+I P+D
Sbjct: 362 TKL-DSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDI 420
Query: 132 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 191
+ F+HR+GRTGRAG++G +L++ + V +ER KF+ + P E++L++ A
Sbjct: 421 DAFIHRAGRTGRAGRKGVCVLLYQPREEYVVERIERHAKMKFDVLPAPTREEILKAVARD 480
Query: 192 VVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWV 250
L V + + F A L+++ + LA+ALA +SG++ ++R LI G+V
Sbjct: 481 AAEDLARVERRATDLFMDQAAELLKDADPVEILASALAVMSGYTSNITTRGLITGTPGYV 540
Query: 251 TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEE 306
T+Q+T D V + S + DE I ++ DD G VFD+ E+
Sbjct: 541 TVQMTSDRPL--------PVPVYCSILRNNLGDETFMRCRDITLLQDD--PGCVFDVLEQ 590
Query: 307 IAKELLNKQIPPGNTISKITKLPAL 331
A+ +++ + G T +I LP +
Sbjct: 591 FAERVMSTPM-RGITFQRIETLPPI 614
>gi|339896857|ref|XP_001462984.2| putative nucleolar RNA helicase II [Leishmania infantum JPCM5]
gi|321398908|emb|CAM65330.2| putative nucleolar RNA helicase II [Leishmania infantum JPCM5]
Length = 678
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/325 (35%), Positives = 181/325 (55%), Gaps = 18/325 (5%)
Query: 13 QVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLAL 71
VG + + A IK Y + ++L+DLI VY+ G+T+VFT TK+D ++S+
Sbjct: 302 MVGKEAVRTASTIKFYRRKCNFSEISSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINN 361
Query: 72 TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 131
T + S+ LHGD+ Q QRE T+ FR KF+VL+ATDVAARGLD+P VDL+I P+D
Sbjct: 362 TKL-DSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDI 420
Query: 132 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 191
+ F+HR+GRTGRAG++G +L++ + V +ER KF+ + P E++L++ A
Sbjct: 421 DAFIHRAGRTGRAGRKGVCVLLYQPREEYVVERIERHAKMKFDVLPAPTREEILKAVARD 480
Query: 192 VVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWV 250
L V + + F A L+++ + LA+ALA +SG++ ++R LI G+V
Sbjct: 481 AAEDLARVERRATDLFMDQAAELLKDADPVEILASALAVMSGYTSNITTRGLITGTPGYV 540
Query: 251 TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEE 306
T+Q+T D V + S + DE I ++ DD G VFD+ E+
Sbjct: 541 TVQMTSDRPL--------PVPVYCSILRNNLGDETFMRCRDITLLQDD--PGCVFDVLEQ 590
Query: 307 IAKELLNKQIPPGNTISKITKLPAL 331
A+ +++ + G T +I LP +
Sbjct: 591 FAERVMSTPM-RGITFQRIETLPPI 614
>gi|407042825|gb|EKE41557.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
Length = 667
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 136/399 (34%), Positives = 200/399 (50%), Gaps = 24/399 (6%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VGN ++ + K A SK ++DLI VY + G+TIVF TK + + ++A+
Sbjct: 282 VGNT--QVPKNAKHLACRIFYQSKTQTIADLIRVYGRTGRTIVFCDTKAECTDCAIAINP 339
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
I + LHGDI Q QRE+TLNGFR+ KF VLVATDVAARGLDI VDLII +P D
Sbjct: 340 IFECQQLHGDIQQKQREQTLNGFRENKFNVLVATDVAARGLDISGVDLIIMTHVPKDIPQ 399
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
+VHR+GRT RAGKEGT I +FT + ++ +E + F+ + P + E + +
Sbjct: 400 YVHRAGRTARAGKEGTTITLFTRKELPQLQLIESRIKIHFQRIGTPQKAQIAEVTCGNLP 459
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTD-ALAAALAQLSGFSRPPSSRSLINHEQGWVTL 252
+ + + E F +++L+E + L +A LS S S RSL+ E G TL
Sbjct: 460 EEIKEIPDATAELFRDISKKLLETGDAETVLCKVIASLSTVSNDDSDRSLLQGEPGVKTL 519
Query: 253 QLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELL 312
+ GF + ++G + P+ D++G++++ D V FDLP +IA +LL
Sbjct: 520 -FMETKGTTTGFSGTKFLLG--KTLEPSEIDKLGEVYVYKDHFV---FFDLPTKIANKLL 573
Query: 313 NKQIPPGNTISKITKLPALQDD---GPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARG 369
+ I IT DD G S D + +R +G G+ GG R
Sbjct: 574 KSKSKWSKAIVNITVPAYFPDDVGIGNSKD-----PNEERGRKGSGNDRRDGGERRRDGN 628
Query: 370 GGSMDRRGFRSSRS-------WGSDDEDGFSSSRGGRSF 401
D + S S +G++ DG SS +G +F
Sbjct: 629 DRRRDGNDRKKSESDKKDRKRYGNNKSDGNSSRKGHITF 667
>gi|449703528|gb|EMD43965.1| ATP-dependent RNA helicase, putative [Entamoeba histolytica KU27]
Length = 695
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/322 (36%), Positives = 171/322 (53%), Gaps = 9/322 (2%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VGN ++ + K A SK ++DLI VY + G+TIVF TK + + ++A+
Sbjct: 282 VGNT--QVPKNAKHLACRIFYQSKTQTIADLIRVYGRTGRTIVFCDTKAECTDCAIAINP 339
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
I + LHGDI Q QRE+TLNGFR+ KF VLVATDVAARGLDI VDLII +P D
Sbjct: 340 IFECQQLHGDIQQKQREQTLNGFRENKFNVLVATDVAARGLDISGVDLIIMTHVPKDIPQ 399
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
+VHR+GRT RAGKEGT I +FT + ++ +E + F+ + P + E + +
Sbjct: 400 YVHRAGRTARAGKEGTTITLFTRKELPQLQLIESRIKIHFQRIGTPQKAQIAEVTCGNLP 459
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTD-ALAAALAQLSGFSRPPSSRSLINHEQGWVTL 252
+ + + E F +++L+E + L +A LS S S RSL+ E G TL
Sbjct: 460 EEIKEIPDATAELFRDISKKLLETGDAETVLCKVIASLSTVSNDDSDRSLLQGEPGVKTL 519
Query: 253 QLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELL 312
+ GF + ++G + P+ D++G++++ D V FDLP +IA +LL
Sbjct: 520 -FMETKGTTTGFSGTKFLLG--KTLEPSEIDKLGEVYVYKDHFV---FFDLPTKIANKLL 573
Query: 313 NKQIPPGNTISKITKLPALQDD 334
+ I IT DD
Sbjct: 574 KSKSKWSKAIVNITVPAYFPDD 595
>gi|183234688|ref|XP_649929.2| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|169800959|gb|EAL44543.2| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
Length = 723
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/322 (36%), Positives = 171/322 (53%), Gaps = 9/322 (2%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VGN ++ + K A SK ++DLI VY + G+TIVF TK + + ++A+
Sbjct: 282 VGNT--QVPKNAKHLACRIFYQSKTQTIADLIRVYGRTGRTIVFCDTKAECTDCAIAINP 339
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
I + LHGDI Q QRE+TLNGFR+ KF VLVATDVAARGLDI VDLII +P D
Sbjct: 340 IFECQQLHGDIQQKQREQTLNGFRENKFNVLVATDVAARGLDISGVDLIIMTHVPKDIPQ 399
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
+VHR+GRT RAGKEGT I +FT + ++ +E + F+ + P + E + +
Sbjct: 400 YVHRAGRTARAGKEGTTITLFTRKELPQLQLIESRIKIHFQRIGTPQKAQIAEVTCGNLP 459
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTD-ALAAALAQLSGFSRPPSSRSLINHEQGWVTL 252
+ + + E F +++L+E + L +A LS S S RSL+ E G TL
Sbjct: 460 EEIKEIPDATAELFRDISKKLLETGDAETVLCKVIASLSTVSNDDSDRSLLQGEPGVKTL 519
Query: 253 QLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELL 312
+ GF + ++G + P+ D++G++++ D V FDLP +IA +LL
Sbjct: 520 -FMETKGTTTGFSGTKFLLG--KTLEPSEIDKLGEVYVYKDHFV---FFDLPTKIANKLL 573
Query: 313 NKQIPPGNTISKITKLPALQDD 334
+ I IT DD
Sbjct: 574 KSKSKWSKAIVNITVPAYFPDD 595
>gi|390472670|ref|XP_002756342.2| PREDICTED: nucleolar RNA helicase 2 [Callithrix jacchus]
Length = 797
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 146/406 (35%), Positives = 215/406 (52%), Gaps = 45/406 (11%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 414 IGKKTQKTAITVEHLAIQCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSA 473
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 474 IKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVE 533
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 534 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDA 593
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT
Sbjct: 594 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVT 652
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G V FD
Sbjct: 653 M-----------ILQCSIEMPNISYAWKELKEQLGE---EIDSKVKGMVFLKGKLGVCFD 698
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRF------SSRDRFSRGGG 355
+P E+ K +S T+ P L +GP + YG F S R R G
Sbjct: 699 VPTASVTEIQEKWRDSRRWQLSVATEQPEL--EGP-REGYGGFRGQREGSRSFRGQRDGN 755
Query: 356 SRF--SRGGARG--GARGGGSMDRRGFRSSRSWGSDDEDGFSSSRG 397
RF RGG RG G R GG G RS+RS + FS + G
Sbjct: 756 RRFRGQRGGNRGPRGQRSGG-----GNRSNRSQDKGQKRSFSKAFG 796
>gi|431904163|gb|ELK09585.1| Nucleolar RNA helicase 2 [Pteropus alecto]
Length = 784
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 147/415 (35%), Positives = 217/415 (52%), Gaps = 50/415 (12%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S ++
Sbjct: 401 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNVS 460
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 461 IKQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVE 520
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 521 SYIHRSGRTGRAGRTGICICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDA 580
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT
Sbjct: 581 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSDAGFVT 639
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRV---------QGAVFD 302
+ + M +S + +++G+ D +V QG FD
Sbjct: 640 M-----------ILQCSIEMPNISYAWKELKEQLGE---DIDSKVKGMVFLKGKQGVCFD 685
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRG 361
+P E+ K +S T+ P L +GP G S R + G R R
Sbjct: 686 VPTAAVTEIQEKWHDSRRWQLSVATEQPDL--EGPRE---GYRSYRGQREGNRGFRGQRE 740
Query: 362 GARG--GARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTS 414
G RG G R G R FR RS GGRS R NN+G + S S
Sbjct: 741 GNRGFRGQREGN----RNFRGQRSG------------GGRSNRFQNNKGQKRSFS 779
>gi|410925948|ref|XP_003976441.1| PREDICTED: nucleolar RNA helicase 2-like [Takifugu rubripes]
Length = 713
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 116/304 (38%), Positives = 180/304 (59%), Gaps = 8/304 (2%)
Query: 10 HSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVS 68
H +G + +K A ++ AI+ + + ++ D+I VY+ G+TIVF +TK++A+E+S
Sbjct: 340 HVDLIGKKTQKAATTVEHLAIACHWSQRAAVIGDVIQVYSGSHGRTIVFCETKKEANELS 399
Query: 69 LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP 128
+ + ++++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P
Sbjct: 400 MNASIKQSTQSLHGDIPQKQRETTLKGFRNGSFEVLVATNVAARGLDIPEVDLVVQCSPP 459
Query: 129 NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS 188
D E+++HRSGRTGRAG+ G I + + +R +E G F V P D+++SS
Sbjct: 460 KDVESYIHRSGRTGRAGRTGVCICFYQRKEEDQLRYVENKAGITFRRVGVPTANDIIKSS 519
Query: 189 AEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQ 247
++ V L+ + ++ +F +A++LIEE+G DALAAALA +SG + RSL+N +
Sbjct: 520 SKDAVRFLDSIPVAAIGYFRASAEKLIEERGAVDALAAALAHISG-ATALEQRSLLNSDA 578
Query: 248 GWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEI 307
G+ TLQLT + +S+ L + T I ++ + G FD+P +
Sbjct: 579 GYTTLQLTCSLEMHNIGYAWKSLKEQLGEEIET---HIHRMTFLKGR--MGVCFDVPADK 633
Query: 308 AKEL 311
KE+
Sbjct: 634 VKEI 637
>gi|451172075|ref|NP_001263383.1| nucleolar RNA helicase 2 [Ovis aries]
Length = 783
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 144/402 (35%), Positives = 215/402 (53%), Gaps = 38/402 (9%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S +
Sbjct: 400 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFQGRTIIFCETKKEAQELSQNVA 459
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E
Sbjct: 460 IRQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVE 519
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 520 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSPTEIIKASSKDA 579
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN E G+VT
Sbjct: 580 IRLLDSVPPTAIGHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSEAGFVT 638
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRV---------QGAVFD 302
+ + M +S + +++G+ D +V QG FD
Sbjct: 639 M-----------ILRCSIEMPNISYAWKELKEQLGE---DIDSKVKGMVFLKGKQGVCFD 684
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRG 361
+P E+ K +S T+ P L +GP + Y F R R G F
Sbjct: 685 IPTASVTEVQGKWHDSRRWQLSVATEQPEL--EGP-REGYRNF----RGQREGNRGFR-- 735
Query: 362 GARGGARGG-GSMDR-RGFRSSRSWGSDDEDGFSSSRGGRSF 401
G R G RGG G +R R FR RS G + + F + RSF
Sbjct: 736 GQREGNRGGRGQRERSRSFRGQRSGGGNKSNRFQNKGQKRSF 777
>gi|134085663|ref|NP_001076996.1| nucleolar RNA helicase 2 [Bos taurus]
gi|133778115|gb|AAI23649.1| DDX21 protein [Bos taurus]
gi|296472163|tpg|DAA14278.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Bos taurus]
Length = 784
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 143/402 (35%), Positives = 214/402 (53%), Gaps = 38/402 (9%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S +
Sbjct: 401 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFQGRTIIFCETKKEAQELSQNVA 460
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E
Sbjct: 461 VRQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVE 520
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 521 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSPTEIIKASSKDA 580
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN E G+VT
Sbjct: 581 IRLLDSVPPTAIGHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSEAGFVT 639
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRV---------QGAVFD 302
+ + M +S + +++G+ D +V QG FD
Sbjct: 640 M-----------ILRCSIEMPNISYAWKELKEQLGE---DIDSKVKGMVFLKGKQGVCFD 685
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRG 361
+P E+ K +S T+ P L +GP + Y F R R G F
Sbjct: 686 IPTASVTEVQEKWHDSRRWQLSVATEQPEL--EGP-REGYRNF----RGQREGNRGFR-- 736
Query: 362 GARGGARGG-GSMDR-RGFRSSRSWGSDDEDGFSSSRGGRSF 401
G R G RG G +R R FR RS G + + F + RSF
Sbjct: 737 GQREGNRGARGQRERSRSFRGQRSGGGNKSNRFQNKGQKRSF 778
>gi|403350666|gb|EJY74800.1| DEAD/DEAH box helicase family protein [Oxytricha trifallax]
Length = 795
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 102/252 (40%), Positives = 158/252 (62%), Gaps = 8/252 (3%)
Query: 16 NQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII 75
N K ++ + +I+ ++ + L+D++ Y G+TIVF TK +A+ SL L+ I
Sbjct: 317 NLKNKTSKTVNHLSINCPYQNRMSALADILICYGGLGQTIVFCSTKAEAN--SLLLSDKI 374
Query: 76 AS--EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
E +HGDI+Q+QRE TL F++ KF+VLVATDVA+RGLDIPNVDL+I E PND E+
Sbjct: 375 KQDIEVMHGDIAQNQREVTLKRFKENKFSVLVATDVASRGLDIPNVDLVIQVEPPNDVES 434
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HR+GRT RAG+ GT I + + + +E+ G KF+ + P EDV+++S+ V+
Sbjct: 435 YIHRAGRTARAGRTGTCITFYGKKHQYMINMIEQKAGIKFQKIGVPQPEDVIKASSRDVI 494
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTD---ALAAALAQLSG-FSRPPSSRSLINHEQGW 249
L+ V+ E + F TA LI++ G D AL A LA LSG + SRS++ ++ +
Sbjct: 495 KNLDQVNDEVLPLFDDTADGLIQKYGGDAKKALTATLAYLSGHYKNVLGSRSVLTGQENY 554
Query: 250 VTLQLTRDSAFS 261
VT+++ D+ F+
Sbjct: 555 VTIEMKFDNPFN 566
>gi|75773731|gb|AAI04622.1| DDX50 protein [Bos taurus]
Length = 446
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 190/331 (57%), Gaps = 10/331 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 60 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 119
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 120 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 179
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 180 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 239
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 240 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 298
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS A +I ++ ++ + G FD+P ++ L
Sbjct: 299 MTLESPEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERL 353
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSDN 340
+ +S KLP +++ DG +S N
Sbjct: 354 QAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 384
>gi|196004420|ref|XP_002112077.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens]
gi|190585976|gb|EDV26044.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens]
Length = 633
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 132/385 (34%), Positives = 207/385 (53%), Gaps = 33/385 (8%)
Query: 18 DEKLAEGIKLYAISTTATSKRTILS-----------DLITVYA-KGGKTIVFTQTKRDAD 65
D+K+ + I A+ T+ T + ++S DL+ VY +TI+F+ TK++A+
Sbjct: 257 DKKIVDLIGKDALRTSTTVEHKVISCPYHERAATIGDLVKVYGGDHARTIIFSPTKKEAN 316
Query: 66 EVSLALTSIIASEA--LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 123
E LAL+S++ E LHGDI Q QRE TL GFR+G F LVATDVAARGLDIP VDL+I
Sbjct: 317 E--LALSSVLKQEVQVLHGDIQQAQREVTLKGFREGNFPCLVATDVAARGLDIPEVDLVI 374
Query: 124 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED 183
E P D +T++HRSGRTGRA + G I + + + ++S+E + G F + P + D
Sbjct: 375 QCEPPKDADTYIHRSGRTGRANRTGICITFYKPTHQDRIKSIESEAGINFCRIGAPQLGD 434
Query: 184 VLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSL 242
++++++ +L+ V E + F A +IE KG AL+AALA +SG++ ++RSL
Sbjct: 435 IIQATSRDAAKSLDSVPAEVLVHFESIASEIIETKGAVKALSAALAHISGYT-SITNRSL 493
Query: 243 INHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAA--DEIGKIHIIADDRVQGAV 300
++ +G+ T + F + S M + +V ++A E+ + + D + G V
Sbjct: 494 LSSREGFTTYVMRSQWEF-----RSVSYMWKVIEVELSSAIKAEVRGMRMCKDKK--GVV 546
Query: 301 FDLPEEIAKELLNKQIPPGNTISKIT-KLPALQDDGPSSDNYGRFSSRDRF----SRGGG 355
FDLP + + N I LP L D S + F++ RF +R
Sbjct: 547 FDLPSNLCDTVKENWKNARNIELDIADALPELLDTSSSFEKPSHFNNNSRFGNNYNRHER 606
Query: 356 SRFSRGGARGGARGGGSMDRRGFRS 380
F++ +R G G+ + RGFR+
Sbjct: 607 RPFNQMASRNYTNGRGN-NPRGFRA 630
>gi|299115354|emb|CBN74178.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 923
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 113/307 (36%), Positives = 175/307 (57%), Gaps = 13/307 (4%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT- 72
VG KLA +K +I ++ + ++L D+IT Y KG IVFT +K + DE++ T
Sbjct: 472 VGKHVNKLATTVKHLSIEVSSRHRSSMLEDIITYYGKGSHAIVFTNSKAECDELADGQTF 531
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+ S+ LHGDISQHQR++T+ FR F VLVATDVAARG+D+ ++DL++ Y P DP+
Sbjct: 532 KTLTSQVLHGDISQHQRDQTIKAFRAKGFQVLVATDVAARGIDVSDIDLVVQYRPPRDPD 591
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV--SPPVVEDVLESSAE 190
++VHRSGRTGRAG+ G A+ ++ ++ R +R +E+ VG F F + P E V+ +
Sbjct: 592 SYVHRSGRTGRAGRPGVAVTLYAENEIRDIRKIEQGVGQGFRFERGAVPSAEQVMSLAGT 651
Query: 191 QVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ-LSGFSRPP--SSRSLINHEQ 247
+ GV + V+FF +AQ L+ E+ ++ LA+ L+ +R + RS++ E
Sbjct: 652 VAREQIKGVSDDMVDFFRESAQELLAEEESEDKELLLAKCLAAIARKTHVTRRSMLTGEP 711
Query: 248 GWVTLQLTRDSAFSRG-FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEE 306
VT+Q+ + G M A +G + P +G+I I D AVFD+ E
Sbjct: 712 DKVTVQMVAPRQLTSGDVMFAVGKLGRAAGFEPM----VGRIAIAKDPTT--AVFDMSTE 765
Query: 307 IAKELLN 313
A +L+
Sbjct: 766 AADQLVK 772
>gi|39644658|gb|AAH18637.2| DDX50 protein, partial [Homo sapiens]
Length = 423
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 190/331 (57%), Gaps = 10/331 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 37 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 96
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 97 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 156
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 157 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 216
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 217 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 275
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS A +I ++ ++ + G FD+P ++ L
Sbjct: 276 MTLESLEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERL 330
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSDN 340
+ +S KLP +++ DG +S N
Sbjct: 331 QAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 361
>gi|380817914|gb|AFE80831.1| nucleolar RNA helicase 2 [Macaca mulatta]
gi|383414353|gb|AFH30390.1| nucleolar RNA helicase 2 [Macaca mulatta]
gi|384943498|gb|AFI35354.1| nucleolar RNA helicase 2 [Macaca mulatta]
Length = 783
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 144/406 (35%), Positives = 216/406 (53%), Gaps = 45/406 (11%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 400 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSA 459
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 460 IKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVE 519
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 520 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDA 579
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT
Sbjct: 580 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVT 638
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G V FD
Sbjct: 639 M-----------ILQCSIEMPNISYAWKELKEQLGE---EIDSKVKGMVFLKGKLGVCFD 684
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRG------GG 355
+P E+ K +S T+ P L +GP + YG F + SRG G
Sbjct: 685 VPTASVTEIQEKWHDSRRWQLSVATEQPEL--EGP-REGYGGFRGQREGSRGFRGQRDGN 741
Query: 356 SRF--SRGGARG--GARGGGSMDRRGFRSSRSWGSDDEDGFSSSRG 397
RF R G+RG G R GG G +S+RS + FS + G
Sbjct: 742 RRFRGQREGSRGPRGQRSGG-----GNKSNRSQNKGQKRSFSKAFG 782
>gi|6807980|emb|CAB70733.1| hypothetical protein [Homo sapiens]
Length = 399
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 190/331 (57%), Gaps = 10/331 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 13 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 72
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 73 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 132
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 133 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 192
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 193 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 251
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS A +I ++ ++ + G FD+P ++ L
Sbjct: 252 MTLESLEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERL 306
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSDN 340
+ +S KLP +++ DG +S N
Sbjct: 307 QAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 337
>gi|332218194|ref|XP_003258244.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Nomascus leucogenys]
Length = 715
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 144/406 (35%), Positives = 216/406 (53%), Gaps = 45/406 (11%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 332 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSA 391
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 392 IKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVE 451
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 452 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDA 511
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT
Sbjct: 512 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSNVGFVT 570
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G V FD
Sbjct: 571 M-----------ILQCSIEMPNISYAWKELKEQLGE---EIDSKVKGMVFLKGKLGVCFD 616
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRG------GG 355
+P E+ K +S T+ P L +GP + YG F + SRG G
Sbjct: 617 VPTASVTEIQEKWHDSRRWQLSVATEQPEL--EGP-REGYGGFRGQREGSRGFRGQRDGN 673
Query: 356 SRF--SRGGARG--GARGGGSMDRRGFRSSRSWGSDDEDGFSSSRG 397
RF R G+RG G R GG G +S+RS + FS + G
Sbjct: 674 RRFRGQREGSRGPRGQRSGG-----GNKSNRSQNKGQKRSFSKAFG 714
>gi|332834196|ref|XP_003312635.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Pan troglodytes]
Length = 715
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 144/406 (35%), Positives = 216/406 (53%), Gaps = 45/406 (11%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 332 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSA 391
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 392 IKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVE 451
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 452 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDA 511
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT
Sbjct: 512 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSNVGFVT 570
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G V FD
Sbjct: 571 M-----------ILQCSIEMPNISYAWKELKEQLGE---EIDSKVKGMVFLKGKLGVCFD 616
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRG------GG 355
+P E+ K +S T+ P L +GP + YG F + SRG G
Sbjct: 617 VPTASVTEIQEKWHDSRRWQLSVATEQPEL--EGP-REGYGGFRGQREGSRGFRGQRDGN 673
Query: 356 SRF--SRGGARG--GARGGGSMDRRGFRSSRSWGSDDEDGFSSSRG 397
RF R G+RG G R GG G +S+RS + FS + G
Sbjct: 674 RRFRGQREGSRGPRGQRSGG-----GNKSNRSQNKGQKRSFSKAFG 714
>gi|109089499|ref|XP_001110939.1| PREDICTED: nucleolar RNA helicase 2-like isoform 3 [Macaca mulatta]
Length = 783
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 144/406 (35%), Positives = 216/406 (53%), Gaps = 45/406 (11%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 400 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSA 459
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 460 IKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVE 519
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 520 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDA 579
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT
Sbjct: 580 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVT 638
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G V FD
Sbjct: 639 M-----------ILQCSIEMPNISYAWKELKEQLGE---EIDSKVKGMVFLKGKLGVCFD 684
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRG------GG 355
+P E+ K +S T+ P L +GP + YG F + SRG G
Sbjct: 685 VPTASVTEIQEKWHDSRRWQLSVATEQPEL--EGP-REGYGGFRGQREGSRGFRGQRDGN 741
Query: 356 SRF--SRGGARG--GARGGGSMDRRGFRSSRSWGSDDEDGFSSSRG 397
RF R G+RG G R GG G +S+RS + FS + G
Sbjct: 742 RRFRGQREGSRGPRGQRSGG-----GNKSNRSQNKGQKRSFSKAFG 782
>gi|397489924|ref|XP_003815961.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Pan paniscus]
Length = 715
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 144/406 (35%), Positives = 216/406 (53%), Gaps = 45/406 (11%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 332 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSA 391
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 392 IKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVE 451
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 452 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDA 511
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT
Sbjct: 512 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSNVGFVT 570
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G V FD
Sbjct: 571 M-----------ILQCSIEMPNISYAWKELKEQLGE---EIDSKVKGMVFLKGKLGVCFD 616
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRG------GG 355
+P E+ K +S T+ P L +GP + YG F + SRG G
Sbjct: 617 VPTASVTEIQEKWHDSRRWQLSVATEQPEL--EGP-REGYGGFRGQREGSRGFRGQRDGN 673
Query: 356 SRF--SRGGARG--GARGGGSMDRRGFRSSRSWGSDDEDGFSSSRG 397
RF R G+RG G R GG G +S+RS + FS + G
Sbjct: 674 RRFRGQREGSRGPRGQRSGG-----GNKSNRSQNKGQKRSFSKAFG 714
>gi|397489922|ref|XP_003815960.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Pan paniscus]
Length = 783
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 144/406 (35%), Positives = 216/406 (53%), Gaps = 45/406 (11%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 400 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSA 459
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 460 IKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVE 519
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 520 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDA 579
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT
Sbjct: 580 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVT 638
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G V FD
Sbjct: 639 M-----------ILQCSIEMPNISYAWKELKEQLGE---EIDSKVKGMVFLKGKLGVCFD 684
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRG------GG 355
+P E+ K +S T+ P L +GP + YG F + SRG G
Sbjct: 685 VPTASVTEIQEKWHDSRRWQLSVATEQPEL--EGP-REGYGGFRGQREGSRGFRGQRDGN 741
Query: 356 SRF--SRGGARG--GARGGGSMDRRGFRSSRSWGSDDEDGFSSSRG 397
RF R G+RG G R GG G +S+RS + FS + G
Sbjct: 742 RRFRGQREGSRGPRGQRSGG-----GNKSNRSQNKGQKRSFSKAFG 782
>gi|114630811|ref|XP_507825.2| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Pan troglodytes]
gi|410222082|gb|JAA08260.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410252906|gb|JAA14420.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410252908|gb|JAA14421.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410252910|gb|JAA14422.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410292262|gb|JAA24731.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
Length = 783
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 144/406 (35%), Positives = 216/406 (53%), Gaps = 45/406 (11%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 400 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSA 459
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 460 IKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVE 519
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 520 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDA 579
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT
Sbjct: 580 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVT 638
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G V FD
Sbjct: 639 M-----------ILQCSIEMPNISYAWKELKEQLGE---EIDSKVKGMVFLKGKLGVCFD 684
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRG------GG 355
+P E+ K +S T+ P L +GP + YG F + SRG G
Sbjct: 685 VPTASVTEIQEKWHDSRRWQLSVATEQPEL--EGP-REGYGGFRGQREGSRGFRGQRDGN 741
Query: 356 SRF--SRGGARG--GARGGGSMDRRGFRSSRSWGSDDEDGFSSSRG 397
RF R G+RG G R GG G +S+RS + FS + G
Sbjct: 742 RRFRGQREGSRGPRGQRSGG-----GNKSNRSQNKGQKRSFSKAFG 782
>gi|11890755|gb|AAF78930.2|AAF78930 RNA helicase II/Gu protein [Homo sapiens]
Length = 715
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 144/406 (35%), Positives = 216/406 (53%), Gaps = 45/406 (11%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 332 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSA 391
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 392 IKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVE 451
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 452 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDA 511
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT
Sbjct: 512 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSNVGFVT 570
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G V FD
Sbjct: 571 M-----------ILQCSIEMPNISYAWKELKEQLGE---EIDSKVKGMVFLKGKLGVCFD 616
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRG------GG 355
+P E+ K +S T+ P L +GP + YG F + SRG G
Sbjct: 617 VPTASVTEIQEKWHDSRRWQLSVATEQPEL--EGP-REGYGGFRGQREGSRGFRGQRDGN 673
Query: 356 SRF--SRGGARG--GARGGGSMDRRGFRSSRSWGSDDEDGFSSSRG 397
RF R G+RG G R GG G +S+RS + FS + G
Sbjct: 674 RRFRGQREGSRGPRGQRSGG-----GNKSNRSQNKGQKRSFSKAFG 714
>gi|379317177|ref|NP_001243839.1| nucleolar RNA helicase 2 isoform 2 [Homo sapiens]
gi|51476855|emb|CAH18395.1| hypothetical protein [Homo sapiens]
gi|119574692|gb|EAW54307.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_c [Homo
sapiens]
gi|123993911|gb|ABM84557.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
gi|124000685|gb|ABM87851.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
gi|189054973|dbj|BAG37957.1| unnamed protein product [Homo sapiens]
Length = 715
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 144/406 (35%), Positives = 216/406 (53%), Gaps = 45/406 (11%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 332 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSA 391
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 392 IKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVE 451
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 452 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDA 511
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT
Sbjct: 512 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSNVGFVT 570
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G V FD
Sbjct: 571 M-----------ILQCSIEMPNISYAWKELKEQLGE---EIDSKVKGMVFLKGKLGVCFD 616
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRG------GG 355
+P E+ K +S T+ P L +GP + YG F + SRG G
Sbjct: 617 VPTASVTEIQEKWHDSRRWQLSVATEQPEL--EGP-REGYGGFRGQREGSRGFRGQRDGN 673
Query: 356 SRF--SRGGARG--GARGGGSMDRRGFRSSRSWGSDDEDGFSSSRG 397
RF R G+RG G R GG G +S+RS + FS + G
Sbjct: 674 RRFRGQREGSRGPRGQRSGG-----GNKSNRSQNKGQKRSFSKAFG 714
>gi|345798960|ref|XP_850174.2| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Canis lupus
familiaris]
Length = 739
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 190/331 (57%), Gaps = 10/331 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 353 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 412
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 413 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 472
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 473 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 532
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 533 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 591
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS A +I ++ ++ + G FD+P ++ L
Sbjct: 592 MTLESPEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERL 646
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSDN 340
+ +S KLP +++ DG +S N
Sbjct: 647 QAEWHDSDWILSLPAKLPEIEEYYDGNTSSN 677
>gi|297686801|ref|XP_002820927.1| PREDICTED: nucleolar RNA helicase 2 [Pongo abelii]
Length = 783
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 144/406 (35%), Positives = 216/406 (53%), Gaps = 45/406 (11%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 400 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSA 459
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 460 IKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVE 519
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 520 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDA 579
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT
Sbjct: 580 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSNVGFVT 638
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G V FD
Sbjct: 639 M-----------ILQCSIEMPNISYAWKELKEQLGE---EIDSKVKGMVFLKGKLGVCFD 684
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRG------GG 355
+P E+ K +S T+ P L +GP + YG F + SRG G
Sbjct: 685 VPTASVTEIQEKWHDSRRWQLSVATEQPEL--EGP-REGYGGFRGQREGSRGFRGQRDGN 741
Query: 356 SRF--SRGGARG--GARGGGSMDRRGFRSSRSWGSDDEDGFSSSRG 397
RF R G+RG G R GG G +S+RS + FS + G
Sbjct: 742 RRFRGQREGSRGPRGQRSGG-----GNKSNRSQNKGQKRSFSKAFG 782
>gi|50659095|ref|NP_004719.2| nucleolar RNA helicase 2 isoform 1 [Homo sapiens]
gi|76803555|sp|Q9NR30.5|DDX21_HUMAN RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
protein 21; AltName: Full=Gu-alpha; AltName:
Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
RNA helicase II; AltName: Full=RH II/Gu
gi|31455230|gb|AAH08071.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapiens]
gi|119574691|gb|EAW54306.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Homo
sapiens]
gi|261858100|dbj|BAI45572.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
Length = 783
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 144/406 (35%), Positives = 216/406 (53%), Gaps = 45/406 (11%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 400 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSA 459
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 460 IKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVE 519
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 520 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDA 579
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT
Sbjct: 580 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVT 638
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G V FD
Sbjct: 639 M-----------ILQCSIEMPNISYAWKELKEQLGE---EIDSKVKGMVFLKGKLGVCFD 684
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRG------GG 355
+P E+ K +S T+ P L +GP + YG F + SRG G
Sbjct: 685 VPTASVTEIQEKWHDSRRWQLSVATEQPEL--EGP-REGYGGFRGQREGSRGFRGQRDGN 741
Query: 356 SRF--SRGGARG--GARGGGSMDRRGFRSSRSWGSDDEDGFSSSRG 397
RF R G+RG G R GG G +S+RS + FS + G
Sbjct: 742 RRFRGQREGSRGPRGQRSGG-----GNKSNRSQNKGQKRSFSKAFG 782
>gi|332218192|ref|XP_003258243.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Nomascus leucogenys]
Length = 783
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 144/406 (35%), Positives = 216/406 (53%), Gaps = 45/406 (11%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 400 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSA 459
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 460 IKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVE 519
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 520 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDA 579
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT
Sbjct: 580 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVT 638
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G V FD
Sbjct: 639 M-----------ILQCSIEMPNISYAWKELKEQLGE---EIDSKVKGMVFLKGKLGVCFD 684
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRG------GG 355
+P E+ K +S T+ P L +GP + YG F + SRG G
Sbjct: 685 VPTASVTEIQEKWHDSRRWQLSVATEQPEL--EGP-REGYGGFRGQREGSRGFRGQRDGN 741
Query: 356 SRF--SRGGARG--GARGGGSMDRRGFRSSRSWGSDDEDGFSSSRG 397
RF R G+RG G R GG G +S+RS + FS + G
Sbjct: 742 RRFRGQREGSRGPRGQRSGG-----GNKSNRSQNKGQKRSFSKAFG 782
>gi|1230564|gb|AAB02546.1| Gu protein, partial [Homo sapiens]
Length = 801
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 144/406 (35%), Positives = 216/406 (53%), Gaps = 45/406 (11%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 418 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSA 477
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 478 IKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVE 537
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 538 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDA 597
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT
Sbjct: 598 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVT 656
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G V FD
Sbjct: 657 M-----------ILQCSIEMPNISYAWKELKEQLGE---EIDSKVKGMVFLKGKLGVCFD 702
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRG------GG 355
+P E+ K +S T+ P L +GP + YG F + SRG G
Sbjct: 703 VPTASVTEIQEKWHDSRRWQLSVATEQPEL--EGP-REGYGGFRGQREGSRGFRGQRDGN 759
Query: 356 SRF--SRGGARG--GARGGGSMDRRGFRSSRSWGSDDEDGFSSSRG 397
RF R G+RG G R GG G +S+RS + FS + G
Sbjct: 760 RRFRGQREGSRGPRGQRSGG-----GNKSNRSQNKGQKRSFSKAFG 800
>gi|329663131|ref|NP_001192982.1| ATP-dependent RNA helicase DDX50 [Bos taurus]
gi|296472173|tpg|DAA14288.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Bos taurus]
gi|440895816|gb|ELR47910.1| ATP-dependent RNA helicase DDX50 [Bos grunniens mutus]
Length = 737
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 190/331 (57%), Gaps = 10/331 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 351 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 410
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 411 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 470
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 471 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 530
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 531 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 589
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS A +I ++ ++ + G FD+P ++ L
Sbjct: 590 MTLESPEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERL 644
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSDN 340
+ +S KLP +++ DG +S N
Sbjct: 645 QAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 675
>gi|426364958|ref|XP_004049558.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Gorilla gorilla
gorilla]
Length = 715
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 143/406 (35%), Positives = 216/406 (53%), Gaps = 45/406 (11%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 332 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSA 391
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 392 IKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVE 451
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 452 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDA 511
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT
Sbjct: 512 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSNVGFVT 570
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G + FD
Sbjct: 571 M-----------ILQCSIEMPNISYAWKELKEQLGE---EIDSKVKGMIFLKGKLGVCFD 616
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRG------GG 355
+P E+ K +S T+ P L +GP + YG F + SRG G
Sbjct: 617 VPTASVTEIQEKWHDSRRWQLSVATEQPEL--EGP-REGYGGFRGQREGSRGFRGQRDGN 673
Query: 356 SRF--SRGGARG--GARGGGSMDRRGFRSSRSWGSDDEDGFSSSRG 397
RF R G+RG G R GG G +S+RS + FS + G
Sbjct: 674 RRFRGQREGSRGPRGQRSGG-----GNKSNRSQNKGQKRSFSKAFG 714
>gi|410975241|ref|XP_003994042.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Felis catus]
Length = 739
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 190/331 (57%), Gaps = 10/331 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 353 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 412
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 413 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 472
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 473 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 532
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 533 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 591
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS A +I ++ ++ + G FD+P ++ L
Sbjct: 592 MTLESPEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERL 646
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSDN 340
+ +S KLP +++ DG +S N
Sbjct: 647 QAEWHDSDWILSLPAKLPEIEEYYDGNTSSN 677
>gi|301755880|ref|XP_002913778.1| PREDICTED: nucleolar RNA helicase 2-like [Ailuropoda melanoleuca]
Length = 794
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 143/398 (35%), Positives = 213/398 (53%), Gaps = 21/398 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S ++
Sbjct: 402 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNVS 461
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E
Sbjct: 462 IKQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVE 521
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 522 SYIHRSGRTGRAGRTGICICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDA 581
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P +V F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT
Sbjct: 582 IRLLDSVPPTAVSHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSDAGFVT 640
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS+ + G + + QG FD+P E+
Sbjct: 641 MILRCSIEMPNISYAWKELKEQLSEDIDSKVK--GMVFLKGK---QGVCFDVPTAAVTEI 695
Query: 312 LNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRG-----GGSRFSRGGARG 365
K +S T+ P L +GP G F + SRG GSRF G R
Sbjct: 696 QEKWHDSRRWQLSVATEQPEL--EGPREGFRG-FRGQREGSRGFRGQREGSRFR--GQRE 750
Query: 366 GARG--GGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSF 401
G R G RGFR RS G + + + RSF
Sbjct: 751 GNRSFRGQREGNRGFRGQRSGGGNKSNRSQNKGQKRSF 788
>gi|426364956|ref|XP_004049557.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Gorilla gorilla
gorilla]
Length = 783
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 143/406 (35%), Positives = 216/406 (53%), Gaps = 45/406 (11%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 400 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSA 459
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 460 IKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVE 519
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 520 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDA 579
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT
Sbjct: 580 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVT 638
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G + FD
Sbjct: 639 M-----------ILQCSIEMPNISYAWKELKEQLGE---EIDSKVKGMIFLKGKLGVCFD 684
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRG------GG 355
+P E+ K +S T+ P L +GP + YG F + SRG G
Sbjct: 685 VPTASVTEIQEKWHDSRRWQLSVATEQPEL--EGP-REGYGGFRGQREGSRGFRGQRDGN 741
Query: 356 SRF--SRGGARG--GARGGGSMDRRGFRSSRSWGSDDEDGFSSSRG 397
RF R G+RG G R GG G +S+RS + FS + G
Sbjct: 742 RRFRGQREGSRGPRGQRSGG-----GNKSNRSQNKGQKRSFSKAFG 782
>gi|281346962|gb|EFB22546.1| hypothetical protein PANDA_001615 [Ailuropoda melanoleuca]
Length = 710
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 190/331 (57%), Gaps = 10/331 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 324 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 383
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 384 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 443
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 444 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 503
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 504 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 562
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS A +I ++ ++ + G FD+P ++ L
Sbjct: 563 MTLESPEEIQDISCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERL 617
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSDN 340
+ +S KLP +++ DG +S N
Sbjct: 618 QAEWHDSDWILSLPAKLPEIEEYYDGNTSSN 648
>gi|351702494|gb|EHB05413.1| ATP-dependent RNA helicase DDX50 [Heterocephalus glaber]
Length = 737
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 125/331 (37%), Positives = 190/331 (57%), Gaps = 10/331 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 351 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 410
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 411 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 470
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 471 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 530
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 531 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITCDKGFVT 589
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS AA +I ++ ++ G FD+P ++ L
Sbjct: 590 MTLESPEEIQDVSCAWKELNRKLSS---NAASQITRMCLLKGK--MGVCFDVPTTESERL 644
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSDN 340
+ +S KLP +++ DG +S N
Sbjct: 645 QAEWHDSDWILSVPAKLPEIEEYYDGNTSAN 675
>gi|344275095|ref|XP_003409349.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Loxodonta africana]
Length = 734
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 190/331 (57%), Gaps = 10/331 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 351 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 410
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 411 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 470
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 471 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 530
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 531 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 589
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS A +I ++ ++ + G FD+P ++ L
Sbjct: 590 MTLESPEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTDSERL 644
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSDN 340
+ +S KLP +++ DG +S N
Sbjct: 645 QAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 675
>gi|301755882|ref|XP_002913779.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Ailuropoda
melanoleuca]
Length = 739
Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 190/331 (57%), Gaps = 10/331 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 353 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 412
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 413 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 472
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 473 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 532
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 533 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 591
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS A +I ++ ++ + G FD+P ++ L
Sbjct: 592 MTLESPEEIQDISCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERL 646
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSDN 340
+ +S KLP +++ DG +S N
Sbjct: 647 QAEWHDSDWILSLPAKLPEIEEYYDGNTSSN 677
>gi|149038677|gb|EDL92966.1| rCG22008, isoform CRA_c [Rattus norvegicus]
Length = 638
Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 140/403 (34%), Positives = 212/403 (52%), Gaps = 36/403 (8%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK+DA E+S
Sbjct: 252 IGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTC 311
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E
Sbjct: 312 IKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVE 371
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 372 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDA 431
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT
Sbjct: 432 IRLLDSVPPTAIGHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSQAGFVT 490
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G V FD
Sbjct: 491 M-----------ILRCSVEMPNISYAWKELKEQLGE---SIDAKVKGMVFLKGKLGVCFD 536
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRD------RFSRGGG 355
+ E E+ K ++ T+ P L +GP G RD R RGG
Sbjct: 537 VRTEAVTEIKEKWHDSRRWQLTVATEQPEL--EGPPEGYRGGRGQRDGSRGSFRGQRGGS 594
Query: 356 SRFSRGGARGGARG-GGSMDRRGFRSSRSWGSDDEDGFSSSRG 397
F G RGG+R G G +S+RS + FS + G
Sbjct: 595 RNFRGQGQRGGSRNFRGQRPGGGNKSNRSPNKGQKRSFSKAFG 637
>gi|281346961|gb|EFB22545.1| hypothetical protein PANDA_001614 [Ailuropoda melanoleuca]
Length = 765
Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 143/398 (35%), Positives = 213/398 (53%), Gaps = 21/398 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S ++
Sbjct: 373 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNVS 432
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E
Sbjct: 433 IKQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVE 492
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 493 SYIHRSGRTGRAGRTGICICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDA 552
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P +V F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT
Sbjct: 553 IRLLDSVPPTAVSHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSDAGFVT 611
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS+ + G + + QG FD+P E+
Sbjct: 612 MILRCSIEMPNISYAWKELKEQLSEDIDSKVK--GMVFLKGK---QGVCFDVPTAAVTEI 666
Query: 312 LNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRG-----GGSRFSRGGARG 365
K +S T+ P L +GP G F + SRG GSRF G R
Sbjct: 667 QEKWHDSRRWQLSVATEQPEL--EGPREGFRG-FRGQREGSRGFRGQREGSRFR--GQRE 721
Query: 366 GARG--GGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSF 401
G R G RGFR RS G + + + RSF
Sbjct: 722 GNRSFRGQREGNRGFRGQRSGGGNKSNRSQNKGQKRSF 759
>gi|327277992|ref|XP_003223747.1| PREDICTED: nucleolar RNA helicase 2-like [Anolis carolinensis]
Length = 628
Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 130/370 (35%), Positives = 203/370 (54%), Gaps = 13/370 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI + + ++ D++ VY+ G+TI+F +TK++A E++L +
Sbjct: 262 IGKKTKKTAMTVEHLAIECHWSQRAAVIGDVLQVYSGSHGRTIIFCETKKEATELALNAS 321
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 322 IKQDAQSLHGDIPQKQREVTLKGFRNGAFGVLVATNVAARGLDIPEVDLVIQSSPPKDVE 381
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + ++ +E+ G F+ V P D++++S++
Sbjct: 382 SYIHRSGRTGRAGRTGMCICFYQRKEDYQLKQVEQKAGITFKRVGVPTATDIIKASSKDA 441
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L+ V P ++++F +A+RLIEEKG +ALAAALA +SG + RSL+N + G+VT
Sbjct: 442 IKSLDSVPPSAIDYFRQSAERLIEEKGAVEALAAALAHISG-ATSIEQRSLLNSDAGYVT 500
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLP-EEIAKE 310
+ L + R G + ++ ++ + G FD+P E+ K
Sbjct: 501 MMLQCSVEMQSIGYAWR---GLKEQLGEDIDSKVFRMRFLKGK--TGVCFDIPVAELPKL 555
Query: 311 LLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGG 370
Q +S T+LP L++ S GR + F R R G RGG
Sbjct: 556 QQTWQDSRRWQLSVATELPELEE---SLKEPGRGGGKPDF-RNRRGGGGGSHFRNGRRGG 611
Query: 371 GSMDRRGFRS 380
S R FR+
Sbjct: 612 DSNRRDRFRN 621
>gi|297797185|ref|XP_002866477.1| hypothetical protein ARALYDRAFT_496396 [Arabidopsis lyrata subsp.
lyrata]
gi|297312312|gb|EFH42736.1| hypothetical protein ARALYDRAFT_496396 [Arabidopsis lyrata subsp.
lyrata]
Length = 669
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 185/337 (54%), Gaps = 18/337 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VGN K + ++ AI + ++ D+I+ Y+ GG+TI+F + K + E+S L
Sbjct: 313 VGNDKMKASNSVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAEKKNEVSELSGLLA- 371
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
S ALHG+I Q QRE TL GFR GKF+ LVAT+VAARGLDI +V LII E P + E
Sbjct: 372 --GSRALHGEIPQAQREVTLAGFRNGKFSTLVATNVAARGLDINDVQLIIQCEPPREVEA 429
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG G A+ ++ S++ +V +E++ G KFE++S P +D+ + +
Sbjct: 430 YIHRSGRTGRAGNTGVAVTLY-ESRKSSVSRIEKEAGIKFEYISAPQPDDIARAVGMEAA 488
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDA---LAAALAQLSGFSRPPSSRSLINHEQGWV 250
+ V V F A+ L+E G A LA ALA+ +GF+ RSL+ + V
Sbjct: 489 ENIKKVCDSVVPAFLGAAKELLESSGLSAEVLLAKALAKTAGFTE-IKKRSLLTSMENHV 547
Query: 251 TLQLTRDSAFSRGFMSARSVMGFLSDVYP-TAADEIGKIHIIADDRVQGAVFDLPE-EIA 308
TLQL + S V G L V P ++I + + AD GAVFD+ + ++A
Sbjct: 548 TLQLEA----GKPMYSPSYVYGLLRRVLPDDKVEQIEGLSLTADK--SGAVFDVKQSDLA 601
Query: 309 KELLNKQIPPGN-TISKITKLPALQDDGP-SSDNYGR 343
L Q G+ ++ + ++P LQ+ P YGR
Sbjct: 602 LFLAAGQKSAGSMSLEVVKEMPKLQEREPLPQKRYGR 638
>gi|355683371|gb|AER97085.1| DEAD box polypeptide 50 [Mustela putorius furo]
Length = 736
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 190/331 (57%), Gaps = 10/331 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 351 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 410
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 411 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 470
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 471 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 530
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 531 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 589
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS A +I ++ ++ + G FD+P ++ L
Sbjct: 590 MTLESPEEIEDISCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERL 644
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSDN 340
+ +S KLP +++ DG +S N
Sbjct: 645 QAEWHDSDWILSLPAKLPEIEEYYDGNTSSN 675
>gi|426255664|ref|XP_004021468.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Ovis aries]
Length = 738
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 190/331 (57%), Gaps = 10/331 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 352 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 411
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 412 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 471
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 472 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 531
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 532 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 590
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS A +I ++ ++ + G FD+P ++ L
Sbjct: 591 MTLESPEEIQDVSSAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERL 645
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSDN 340
+ +S KLP +++ DG +S N
Sbjct: 646 QAEWRDSDWILSVPAKLPEIEEYYDGNTSSN 676
>gi|402880683|ref|XP_003903927.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Papio anubis]
Length = 680
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 190/331 (57%), Gaps = 10/331 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 294 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 353
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 354 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 413
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 414 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 473
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 474 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 532
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS A +I ++ ++ + G FD+P ++ L
Sbjct: 533 MTLESLEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERL 587
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSDN 340
+ +S KLP +++ DG +S N
Sbjct: 588 QAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 618
>gi|12652909|gb|AAH00210.1| DDX50 protein, partial [Homo sapiens]
Length = 467
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 190/331 (57%), Gaps = 10/331 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 81 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 140
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 141 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 200
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 201 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 260
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 261 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 319
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS A +I ++ ++ + G FD+P ++ L
Sbjct: 320 MTLESLEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERL 374
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSDN 340
+ +S KLP +++ DG +S N
Sbjct: 375 QAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 405
>gi|81295381|ref|NP_001032278.1| nucleolar RNA helicase 2 [Rattus norvegicus]
gi|123780397|sp|Q3B8Q1.1|DDX21_RAT RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
protein 21; AltName: Full=Gu-alpha; AltName:
Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
RNA helicase II; AltName: Full=RH II/Gu
gi|77748254|gb|AAI05879.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Rattus norvegicus]
gi|149038676|gb|EDL92965.1| rCG22008, isoform CRA_b [Rattus norvegicus]
Length = 782
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 140/403 (34%), Positives = 212/403 (52%), Gaps = 36/403 (8%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK+DA E+S
Sbjct: 396 IGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTC 455
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E
Sbjct: 456 IKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVE 515
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 516 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDA 575
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT
Sbjct: 576 IRLLDSVPPTAIGHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSQAGFVT 634
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G V FD
Sbjct: 635 M-----------ILRCSVEMPNISYAWKELKEQLGE---SIDAKVKGMVFLKGKLGVCFD 680
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRD------RFSRGGG 355
+ E E+ K ++ T+ P L +GP G RD R RGG
Sbjct: 681 VRTEAVTEIKEKWHDSRRWQLTVATEQPEL--EGPPEGYRGGRGQRDGSRGSFRGQRGGS 738
Query: 356 SRFSRGGARGGARG-GGSMDRRGFRSSRSWGSDDEDGFSSSRG 397
F G RGG+R G G +S+RS + FS + G
Sbjct: 739 RNFRGQGQRGGSRNFRGQRPGGGNKSNRSPNKGQKRSFSKAFG 781
>gi|359490274|ref|XP_002269873.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Vitis
vinifera]
Length = 711
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 123/325 (37%), Positives = 176/325 (54%), Gaps = 16/325 (4%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VGN+ K + ++ + +++++ ++ D+I Y+ GG+TI+FT+TK A E++ L
Sbjct: 336 VGNEKMKASTNVRHIVLPCSSSARSQVIPDVIRCYSSGGRTIIFTETKDSASELAGLLP- 394
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ ALHGDI Q QRE TL+GFR GKF LVAT+VAARGLDI +V LII E P D E
Sbjct: 395 --GARALHGDIQQSQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEA 452
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG G A+++F +R + +ER+ G KFE VS P D+ +S+ +
Sbjct: 453 YIHRSGRTGRAGNSGVAVMLF-DPRRSNISKIERESGVKFEHVSAPQPADIAKSAGVEAA 511
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDA---LAAALAQLSGFSRPPSSRSLINHEQGWV 250
T+ V + F A+ L+ G A LA ALA+ SG++ SRSL+ V
Sbjct: 512 GTITQVSDSVIPAFKSAAEELLNTSGLSAVELLAKALAKASGYTE-IKSRSLLASLDNHV 570
Query: 251 TLQLTRDSAFSRGFMSARSVMGFLSDVYPT-AADEIGKIHIIADDRVQGAVFDLPEEIAK 309
T+ L + + G L P D I + + AD GAVFD+ E
Sbjct: 571 TVLLEA----GKPIYTPSFAYGVLRRFLPEDKVDSIKGLALTADG--NGAVFDVATEDLD 624
Query: 310 ELLNKQIPPGNTISKITK-LPALQD 333
L Q N ++ K LP LQ+
Sbjct: 625 AFLAGQENAANVSLEVLKALPRLQE 649
>gi|395820612|ref|XP_003783657.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Otolemur garnettii]
Length = 737
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 190/331 (57%), Gaps = 10/331 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 351 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 410
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 411 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 470
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 471 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 530
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 531 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGASN-FEPRSLITSDKGFVT 589
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS A +I ++ ++ + G FD+P ++ L
Sbjct: 590 MTLESLEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTAESERL 644
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSDN 340
+ +S KLP +++ DG +S N
Sbjct: 645 QAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 675
>gi|410349717|gb|JAA41462.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
Length = 737
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 190/331 (57%), Gaps = 10/331 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 351 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 410
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 411 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 470
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 471 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 530
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 531 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 589
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS A +I ++ ++ + G FD+P ++ L
Sbjct: 590 MTLESLEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERL 644
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSDN 340
+ +S KLP +++ DG +S N
Sbjct: 645 QAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 675
>gi|410975245|ref|XP_003994044.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Felis catus]
gi|410975247|ref|XP_003994045.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Felis catus]
Length = 712
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 141/395 (35%), Positives = 215/395 (54%), Gaps = 24/395 (6%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S ++
Sbjct: 329 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNVS 388
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E
Sbjct: 389 IKQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVE 448
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 449 SYIHRSGRTGRAGRTGICICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDA 508
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT
Sbjct: 509 IRLLDSVPPTAIGHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSDAGFVT 567
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEI-GKIH-IIADDRVQGAVFDLPEEIAK 309
+ L R + ++ ++ +EI K+ ++ QG FD+P
Sbjct: 568 MIL-------RCSIEMPNISYAWKELKEQLGEEIDSKVKGMVFLKGKQGVCFDVPTAAVT 620
Query: 310 ELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARG--G 366
E+ K +S T+ P L +GP + Y F + SR G R R G R G
Sbjct: 621 EIQEKWHDSRRWQLSVATEQPEL--EGP-REGYRGFRGQREGSR--GFRGQREGNRSFRG 675
Query: 367 ARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSF 401
R G R FR RS G + + F + RSF
Sbjct: 676 QREGN----RSFRGQRSGGGNKSNRFQNKGQKRSF 706
>gi|402880640|ref|XP_003903906.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Papio anubis]
Length = 715
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 142/403 (35%), Positives = 214/403 (53%), Gaps = 39/403 (9%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 332 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSA 391
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 392 IKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVE 451
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 452 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDA 511
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT
Sbjct: 512 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVT 570
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G V FD
Sbjct: 571 M-----------ILQCSIEMPNISYAWKELKEQLGE---EIDSKVKGMVFLKGKLGVCFD 616
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRG------GG 355
+P E+ K +S T+ P L +GP + YG F + SRG G
Sbjct: 617 VPTASVTEIQEKWHDSRRWQLSVATEQPEL--EGP-REGYGGFRGQREGSRGFRGQRDGN 673
Query: 356 SRFSRGGARGGARGG-GSMDRRGFRSSRSWGSDDEDGFSSSRG 397
RF G R G+RG G G +S+RS + FS + G
Sbjct: 674 RRFR--GQREGSRGPRGQQSGGGNKSNRSQNKGQKRSFSKAFG 714
>gi|402880638|ref|XP_003903905.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Papio anubis]
Length = 783
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 142/403 (35%), Positives = 214/403 (53%), Gaps = 39/403 (9%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 400 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSA 459
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 460 IKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVE 519
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 520 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDA 579
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT
Sbjct: 580 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVT 638
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G V FD
Sbjct: 639 M-----------ILQCSIEMPNISYAWKELKEQLGE---EIDSKVKGMVFLKGKLGVCFD 684
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRG------GG 355
+P E+ K +S T+ P L +GP + YG F + SRG G
Sbjct: 685 VPTASVTEIQEKWHDSRRWQLSVATEQPEL--EGP-REGYGGFRGQREGSRGFRGQRDGN 741
Query: 356 SRFSRGGARGGARGG-GSMDRRGFRSSRSWGSDDEDGFSSSRG 397
RF G R G+RG G G +S+RS + FS + G
Sbjct: 742 RRFR--GQREGSRGPRGQQSGGGNKSNRSQNKGQKRSFSKAFG 782
>gi|384475931|ref|NP_001245111.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
gi|296220521|ref|XP_002756344.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Callithrix
jacchus]
gi|380816428|gb|AFE80088.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
gi|383421495|gb|AFH33961.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
gi|384949360|gb|AFI38285.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
Length = 737
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 190/331 (57%), Gaps = 10/331 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 351 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 410
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 411 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 470
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 471 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 530
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 531 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 589
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS A +I ++ ++ + G FD+P ++ L
Sbjct: 590 MTLESLEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERL 644
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSDN 340
+ +S KLP +++ DG +S N
Sbjct: 645 QAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 675
>gi|348509639|ref|XP_003442355.1| PREDICTED: nucleolar RNA helicase 2-like [Oreochromis niloticus]
Length = 755
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/304 (37%), Positives = 179/304 (58%), Gaps = 8/304 (2%)
Query: 10 HSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVS 68
H +G + +K A ++ AI+ + + ++ D+I VY+ G+TIVF +TK++A+E+S
Sbjct: 368 HIDLIGKKTQKAATTVEHLAITCHWSQRAAVIGDVIQVYSGSHGRTIVFCETKKEANELS 427
Query: 69 LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP 128
+ + ++++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P
Sbjct: 428 MNASIKQSTQSLHGDIPQKQREMTLKGFRNGAFEVLVATNVAARGLDIPEVDLVVQCSPP 487
Query: 129 NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS 188
D E+++HRSGRTGRAG+ G I + + +R +E G F V P D+++SS
Sbjct: 488 KDVESYIHRSGRTGRAGRTGVCICFYQRKEEDQLRYVENKAGITFRRVGVPTANDIIKSS 547
Query: 189 AEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQ 247
++ V L+ V ++ +F +A++LIEE+G DALAAALA +SG + RSL+N +
Sbjct: 548 SKDAVRFLDSVPVAAIGYFRASAEKLIEERGAVDALAAALAHISG-ATSLEQRSLLNSDA 606
Query: 248 GWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEI 307
G+ T+QL + R++ L + + I ++ + G FD+P +
Sbjct: 607 GFSTMQLVCSQEMHNLGYAWRTIKEQLGE---QIENHIHRMTFLKGR--TGVCFDVPADK 661
Query: 308 AKEL 311
KE+
Sbjct: 662 VKEI 665
>gi|168015062|ref|XP_001760070.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688820|gb|EDQ75195.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 657
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 174/322 (54%), Gaps = 10/322 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG++ K + +K + + + ++ D+I Y GG+ IVFT+TK DA E++ L S
Sbjct: 296 VGDEKMKASNNVKHLLLPGHYSMRTQLVQDVIQCYGSGGRIIVFTETKNDASELAGVLKS 355
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
A ALHGDI Q+QRE TL GFR KF+VLVATDVAARGLDI +V L+I E P D ET
Sbjct: 356 GTA-RALHGDIPQNQREVTLQGFRTSKFSVLVATDVAARGLDINDVQLVIQCEPPRDAET 414
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG G ++L + + + +ER G KFE ++ P D+ ++S
Sbjct: 415 YIHRSGRTGRAGNTGISVLFYDRKKEYMIPQIERKAGFKFERIAAPQPADIAKASGNTAT 474
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWV 250
+ V + F A+ L++ G D LA A+A++SG + RSL+
Sbjct: 475 DGVLAVSDTVIPLFRQAAEDLVKSSGLPVLDVLAKAIAKISGQTE-LKRRSLLTSHDDAT 533
Query: 251 TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKE 310
TL L ++ + + +L + +E+ ++++ D GAVFD+P +E
Sbjct: 534 TLMLKANTKMYSPTYAFNCLRKYLPE---ETVNEVRRMNLTTD--CTGAVFDVPSRSVEE 588
Query: 311 LLNKQIPPGNTISKITKLPALQ 332
+ +Q T+ + LP LQ
Sbjct: 589 FIAEQEGENFTVEVLDALPELQ 610
>gi|114630813|ref|XP_507824.2| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pan
troglodytes]
gi|397489926|ref|XP_003815962.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pan
paniscus]
gi|410227544|gb|JAA10991.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
gi|410259742|gb|JAA17837.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
gi|410288618|gb|JAA22909.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
Length = 737
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 190/331 (57%), Gaps = 10/331 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 351 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 410
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 411 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 470
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 471 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 530
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 531 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 589
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS A +I ++ ++ + G FD+P ++ L
Sbjct: 590 MTLESLEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERL 644
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSDN 340
+ +S KLP +++ DG +S N
Sbjct: 645 QAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 675
>gi|431904164|gb|ELK09586.1| ATP-dependent RNA helicase DDX50 [Pteropus alecto]
Length = 738
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 123/331 (37%), Positives = 190/331 (57%), Gaps = 10/331 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 352 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 411
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 412 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 471
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 472 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 531
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 532 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 590
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + L+ A +I ++ ++ + G FD+P ++ L
Sbjct: 591 MTLESPEEIQDVSCAWKELNRKLNS---NAVSQITRMFLLKGN--MGVCFDVPTTESESL 645
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSDN 340
+ +S KLP +++ DG +S N
Sbjct: 646 QAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 676
>gi|332218196|ref|XP_003258245.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Nomascus
leucogenys]
Length = 737
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 190/331 (57%), Gaps = 10/331 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 351 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 410
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 411 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 470
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 471 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 530
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 531 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 589
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS A +I ++ ++ + G FD+P ++ L
Sbjct: 590 MTLESLEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERL 644
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSDN 340
+ +S KLP +++ DG +S N
Sbjct: 645 QAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 675
>gi|13129006|ref|NP_076950.1| ATP-dependent RNA helicase DDX50 [Homo sapiens]
gi|297686803|ref|XP_002820928.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pongo
abelii]
gi|55976580|sp|Q9BQ39.1|DDX50_HUMAN RecName: Full=ATP-dependent RNA helicase DDX50; AltName: Full=DEAD
box protein 50; AltName: Full=Gu-beta; AltName:
Full=Nucleolar protein Gu2
gi|13540304|gb|AAK29402.1|AF334103_1 nucleolar protein GU2 [Homo sapiens]
gi|12653021|gb|AAH00272.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
gi|119574689|gb|EAW54304.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
gi|123983644|gb|ABM83473.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [synthetic construct]
gi|123998165|gb|ABM86684.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [synthetic construct]
Length = 737
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 190/331 (57%), Gaps = 10/331 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 351 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 410
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 411 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 470
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 471 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 530
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 531 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 589
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS A +I ++ ++ + G FD+P ++ L
Sbjct: 590 MTLESLEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERL 644
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSDN 340
+ +S KLP +++ DG +S N
Sbjct: 645 QAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 675
>gi|126343381|ref|XP_001380653.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Monodelphis domestica]
Length = 744
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/243 (45%), Positives = 156/243 (64%), Gaps = 3/243 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D+I VY+ G+ I+F +TK++ E++L
Sbjct: 356 VGKMTQKTATTVEHLAIQCHWSQRAAVIGDVIQVYSGNDGRAIIFCETKKNVAEMALNPH 415
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 416 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 475
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + ++R ++ +E G F+ V P D+++S +
Sbjct: 476 SYIHRSGRTGRAGRTGICICFYQPNERGQLKYVEGKAGITFKRVGVPTTMDLVKSRSMDA 535
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +VEFF P+AQRLIEEKG DALAAALA +SG S RSLIN ++G+VT
Sbjct: 536 IRSLASVSFVAVEFFRPSAQRLIEEKGAVDALAAALAHISGASS-FEPRSLINSDKGFVT 594
Query: 252 LQL 254
+ L
Sbjct: 595 MTL 597
>gi|199561314|ref|NP_001013216.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Rattus norvegicus]
Length = 734
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 122/331 (36%), Positives = 190/331 (57%), Gaps = 10/331 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 348 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 407
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 408 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 467
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G + + +R +R +E+ G F+ V P D+++S +
Sbjct: 468 SYIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 527
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 528 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 586
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS A ++ ++ ++ + G FD+P ++ L
Sbjct: 587 MTLESPEEIQDVSCAWKELNRKLSS---NAVSQVTRMCLLKGN--MGVCFDVPTSESERL 641
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSDN 340
+ +S KLP +++ DG +S N
Sbjct: 642 QAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 672
>gi|395501398|ref|XP_003755082.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Sarcophilus harrisii]
Length = 736
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/243 (45%), Positives = 156/243 (64%), Gaps = 3/243 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D+I VY+ G+ I+F +TK++ E++L
Sbjct: 348 VGKMTQKTATTVEHLAIQCHWSQRAAVIGDVIQVYSGNDGRAIIFCETKKNVAEMALNPH 407
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 408 IKQNAQCLHGDIAQSQREITLKGFREGNFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 467
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + ++R ++ +E G F+ V P D+++S +
Sbjct: 468 SYIHRSGRTGRAGRTGICICFYQPNERGQLKYVEGKAGITFKRVGVPTTMDLVKSRSMDA 527
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +VEFF P+AQRLIEEKG DALAAALA +SG S RSLIN ++G+VT
Sbjct: 528 IRSLASVSFVAVEFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLINSDKGFVT 586
Query: 252 LQL 254
+ L
Sbjct: 587 MTL 589
>gi|344237687|gb|EGV93790.1| ATP-dependent RNA helicase DDX50 [Cricetulus griseus]
Length = 670
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 122/331 (36%), Positives = 190/331 (57%), Gaps = 10/331 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 340 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 399
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 400 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 459
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G + + +R +R +E+ G F+ V P D+++S +
Sbjct: 460 SYIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 519
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 520 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 578
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS A ++ ++ ++ + G FD+P ++ L
Sbjct: 579 MTLESPEEIQDVSCAWKELNRKLSS---NAVSQVTRMCLLKGN--MGVCFDVPTSESERL 633
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSDN 340
+ +S KLP +++ DG +S N
Sbjct: 634 QAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 664
>gi|302791703|ref|XP_002977618.1| hypothetical protein SELMODRAFT_107027 [Selaginella moellendorffii]
gi|300154988|gb|EFJ21622.1| hypothetical protein SELMODRAFT_107027 [Selaginella moellendorffii]
Length = 663
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 112/303 (36%), Positives = 171/303 (56%), Gaps = 11/303 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG++ K + +K + +++ +++D+I VY GG+ IVFT+TK DA E++ +L +
Sbjct: 294 VGDEKMKASNNVKHLLLQCAYSARSQMIADVIKVYGSGGRVIVFTETKNDASELAGSLGT 353
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY-ELPNDPE 132
+A LHGDI Q QRE TL GFR KF VLVATDVAARGLDI +V LII E P D E
Sbjct: 354 NVA-RPLHGDIPQAQREHTLAGFRSAKFLVLVATDVAARGLDINDVQLIIQQCEPPKDVE 412
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
T++HRSGRTGRAG G A++MF + + +E G KFE ++PP + + S+
Sbjct: 413 TYIHRSGRTGRAGNTGIAVMMFDRKKEYMIPMIEAKAGFKFEKITPPQPSTIAKESSFTA 472
Query: 193 VATLNGVHPESVEFFTPTAQRLIEE---KGTDALAAALAQLSGFSRPPSSRSLINHEQGW 249
+ ++ V V FF A++L+ + + LA ALA+++G + +H+
Sbjct: 473 IKAVSAVSDSVVPFFKEAAEQLVSDCKRPAVELLAKALAKIAGCTEVKRRSLQTSHDDAT 532
Query: 250 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAK 309
L S G++ ++ GFLS+ + I ++++ AD + AVFD+P +
Sbjct: 533 TLLFEVSKPIHSVGYI-FNALRGFLSE---ECSSSIRRMNLTADGK--AAVFDVPSAMVD 586
Query: 310 ELL 312
E L
Sbjct: 587 EFL 589
>gi|159488923|ref|XP_001702450.1| RNA helicase [Chlamydomonas reinhardtii]
gi|158271118|gb|EDO96945.1| RNA helicase [Chlamydomonas reinhardtii]
Length = 737
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 115/329 (34%), Positives = 181/329 (55%), Gaps = 16/329 (4%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+ + A +K + + + +L DLIT Y GG+TI+FT +K++A E+S+ L
Sbjct: 323 VGDDRMQAAVTVKHLMLPCSYPQRAGLLKDLITSYGAGGRTIIFTDSKKEAAELSVVLGD 382
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ ++ALHGD++Q RE+TL+GFR+G+F +L+ATDVAARGLD+ ++L++ + P D ET
Sbjct: 383 SLGAQALHGDLAQSMREQTLDGFRKGRFAILIATDVAARGLDVTGIELVLMVDPPADWET 442
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG G + + T V +E+ G KFE + P D+ +AE+ +
Sbjct: 443 YIHRSGRTGRAGSSGVCVTLVTKKMEYMVPIIEKRAGMKFERIGAPQPADMARIAAERTL 502
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTD------ALAAALAQLSGFSRPPSSRSLINHEQ 247
+ L V P V F A+R + E D ALA ALA+++G+ + +RSL+
Sbjct: 503 SLLGEVDPAVVGHFREAAERYLSESAADGRDPAEALARALAKITGY-KVMKARSLLTAHD 561
Query: 248 GWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPT---AADEIGKIHIIADDRVQGAVFDLP 304
TL + SV G L D++ ++ + AD + GAVFD+P
Sbjct: 562 DCTTLLF---ECADHTIENPGSVWGHLRKTCRLDEGLLDQVKRMTVTADGK--GAVFDVP 616
Query: 305 EEIAKELLN-KQIPPGNTISKITKLPALQ 332
E + L + G T++ + LP L+
Sbjct: 617 SEHVQAFLEAAEEKRGITLTLPSSLPELK 645
>gi|296084100|emb|CBI24488.3| unnamed protein product [Vitis vinifera]
Length = 547
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 123/325 (37%), Positives = 176/325 (54%), Gaps = 16/325 (4%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VGN+ K + ++ + +++++ ++ D+I Y+ GG+TI+FT+TK A E++ L
Sbjct: 189 VGNEKMKASTNVRHIVLPCSSSARSQVIPDVIRCYSSGGRTIIFTETKDSASELAGLLP- 247
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ ALHGDI Q QRE TL+GFR GKF LVAT+VAARGLDI +V LII E P D E
Sbjct: 248 --GARALHGDIQQSQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEA 305
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG G A+++F +R + +ER+ G KFE VS P D+ +S+ +
Sbjct: 306 YIHRSGRTGRAGNSGVAVMLF-DPRRSNISKIERESGVKFEHVSAPQPADIAKSAGVEAA 364
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDA---LAAALAQLSGFSRPPSSRSLINHEQGWV 250
T+ V + F A+ L+ G A LA ALA+ SG++ SRSL+ V
Sbjct: 365 GTITQVSDSVIPAFKSAAEELLNTSGLSAVELLAKALAKASGYTE-IKSRSLLASLDNHV 423
Query: 251 TLQLTRDSAFSRGFMSARSVMGFLSDVYPT-AADEIGKIHIIADDRVQGAVFDLPEEIAK 309
T+ L + + G L P D I + + AD GAVFD+ E
Sbjct: 424 TVLLEA----GKPIYTPSFAYGVLRRFLPEDKVDSIKGLALTADG--NGAVFDVATEDLD 477
Query: 310 ELLNKQIPPGNTISKITK-LPALQD 333
L Q N ++ K LP LQ+
Sbjct: 478 AFLAGQENAANVSLEVLKALPRLQE 502
>gi|407835252|gb|EKF99205.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
Length = 642
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 127/384 (33%), Positives = 196/384 (51%), Gaps = 23/384 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG + A IK Y + +L+DL+ VY+ + G+T+VFT TK++ ++S+ T
Sbjct: 269 VGQGTMRAANTIKFYRRKCHFSEVSCMLADLVKVYSGRHGRTLVFTNTKKECHDLSINNT 328
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+ S+ LHGD+ Q QRE T+ FR KF+VL+ATDVAARGLD+P VDL+I P D +
Sbjct: 329 KL-DSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDID 387
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
F+HR+GRTGRAG++G +L+ V +ER KFE + P +++L + A
Sbjct: 388 AFIHRAGRTGRAGRKGVCVLLHQPKDEYIVERIERHAKIKFEVLPAPTRDEILRAVARDA 447
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEK-GTDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
L V + F A L+++ T+ LA+A+A +SG++ + R LI +G VT
Sbjct: 448 AEDLARVERSATNLFMDQAAELLKDADATEILASAIAVMSGYTSSITRRGLITGAKGSVT 507
Query: 252 LQLTRDSAFSRGFMSA--RSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAK 309
+Q+ + R+ +G +++ D I ++ + G VFD+PEE+A
Sbjct: 508 IQMLGQRTLPIPVFCSILRNSLG--DNLFTRCRD----ITLLQES--PGCVFDVPEEVAD 559
Query: 310 ELLNKQIPPGNTISKITKLPALQDDGPSSDNY---------GRFSSRDRFSRGGGSRFSR 360
++L+ I G + I LP + +S N GR S + GGGS +
Sbjct: 560 QILSAPI-RGMQLDVIETLPPIIARELNSGNRGGGGQGYFNGRGGSNGYYRNGGGSGYRS 618
Query: 361 GGARGGARGGGSMDRRGFRSSRSW 384
G G R G G R R +
Sbjct: 619 NGYGSGYRSNGYGSGGGRRVQRRY 642
>gi|302786878|ref|XP_002975210.1| hypothetical protein SELMODRAFT_150370 [Selaginella moellendorffii]
gi|300157369|gb|EFJ23995.1| hypothetical protein SELMODRAFT_150370 [Selaginella moellendorffii]
Length = 626
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 112/303 (36%), Positives = 171/303 (56%), Gaps = 11/303 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG++ K + +K + +++ +++D+I VY GG+ IVFT+TK DA E++ +L +
Sbjct: 257 VGDEKMKASNNVKHLLLQCAYSARSQMIADVIKVYGSGGRVIVFTETKNDASELAGSLGT 316
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH-YELPNDPE 132
+A LHGDI Q QRE TL GFR KF VLVATDVAARGLDI +V LII E P D E
Sbjct: 317 NVA-RPLHGDIPQAQREHTLAGFRSAKFLVLVATDVAARGLDINDVQLIIQQCEPPKDVE 375
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
T++HRSGRTGRAG G A++MF + + +E G KFE ++PP + + S+
Sbjct: 376 TYIHRSGRTGRAGNTGIAVMMFDRKKEYMIPMIEAKAGFKFEKITPPQPSTIAKESSFTA 435
Query: 193 VATLNGVHPESVEFFTPTAQRLIEE---KGTDALAAALAQLSGFSRPPSSRSLINHEQGW 249
+ ++ V V FF A++L+ + + LA ALA+++G + +H+
Sbjct: 436 IKAVSAVSDSVVPFFKEAAEQLVSDCKRPAMELLAKALAKIAGCTEVKRRSLQTSHDDAT 495
Query: 250 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAK 309
L S G++ ++ GFLS+ + I ++++ AD + AVFD+P +
Sbjct: 496 TLLFEVSKPIHSVGYIF-NALRGFLSE---ECSSSIRRMNLTADGK--AAVFDVPSAMVD 549
Query: 310 ELL 312
E L
Sbjct: 550 EFL 552
>gi|348575872|ref|XP_003473712.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Cavia porcellus]
Length = 735
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 190/330 (57%), Gaps = 10/330 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 350 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 409
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 410 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 469
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 470 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 529
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 530 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 588
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS +I ++ ++ + G FD+P +++L
Sbjct: 589 MTLESSEEIQDVSCAWKELNRKLSS---NTVSQITRMCLLKGN--MGVCFDVPTTESEKL 643
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSD 339
+ +S KLP +++ DG +S+
Sbjct: 644 QAEWHDSDWILSVPAKLPEIEEYYDGNTSN 673
>gi|291404258|ref|XP_002718495.1| PREDICTED: nucleolar protein GU2 [Oryctolagus cuniculus]
Length = 735
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 125/332 (37%), Positives = 191/332 (57%), Gaps = 12/332 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 349 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 408
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 409 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 468
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 469 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 528
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 529 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 587
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS A ++ ++ ++ + G FD+P I E
Sbjct: 588 MTLESPEEIQDVSSAWKELNRKLSS---NAVSQVTRMCLLKGN--MGVCFDVP-TIESES 641
Query: 312 LNKQIPPGNTISKI-TKLPALQD--DGPSSDN 340
L + + I + KLP +++ DG +S N
Sbjct: 642 LQAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 673
>gi|26334341|dbj|BAC30888.1| unnamed protein product [Mus musculus]
Length = 669
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 122/331 (36%), Positives = 189/331 (57%), Gaps = 10/331 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 283 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 342
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 343 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 402
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G + + +R +R +E+ G F+ V P D+++S +
Sbjct: 403 SYIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 462
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 463 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 521
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS A + ++ ++ + G FD+P ++ L
Sbjct: 522 MTLESPEEIQDVSCAWKELNRKLSS---NAVSHVTRMCLLKGN--MGVCFDVPTSESERL 576
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSDN 340
+ +S KLP +++ DG +S N
Sbjct: 577 QAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 607
>gi|71406310|ref|XP_805705.1| nucleolar RNA helicase II [Trypanosoma cruzi strain CL Brener]
gi|70869212|gb|EAN83854.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
Length = 660
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 122/360 (33%), Positives = 190/360 (52%), Gaps = 26/360 (7%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG + A IK Y + +L+DL+ VY+ + G+T+VFT TK++ ++S+ T
Sbjct: 269 VGQGTMRAANTIKFYRRKCHFSEVSCMLADLVKVYSGRHGRTLVFTNTKKECHDLSINNT 328
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+ S+ LHGD+ Q QRE T+ FR KF+VL+ATDVAARGLD+P VDL+I P D +
Sbjct: 329 KL-DSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDID 387
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
F+HR+GRTGRAG++G +L+ V +ER KFE + P +++L + A
Sbjct: 388 AFIHRAGRTGRAGRKGVCVLLHQPKDEYIVERIERHAKIKFEVLPAPTRDEILRAVARDA 447
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEK-GTDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
L V + F A L+++ T+ LA+A+A +SG++ + R LI +G VT
Sbjct: 448 AEDLARVERSATNLFMEQAAELLKDADATEILASAIAVMSGYTSSITRRGLITGAKGSVT 507
Query: 252 LQLTRDSAFSRGFMSA--RSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAK 309
+Q+ + R+ +G +++ D I ++ + G VFD+PEE+A
Sbjct: 508 IQMLGQRTLPIPVFCSILRNSLG--DNLFTRCRD----ITLLQES--PGCVFDVPEEVAD 559
Query: 310 ELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARG 369
++L+ I G + I LP + +S N G GGG + G RGG+ G
Sbjct: 560 QILSAPI-RGMQLGVIETLPPIIARELNSGNRG----------GGGQSYFNG--RGGSNG 606
>gi|338716828|ref|XP_001503679.3| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Equus
caballus]
Length = 739
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 189/331 (57%), Gaps = 10/331 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 352 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 411
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 412 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 471
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 472 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 531
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 532 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 590
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS A +I ++ ++ + G FD+P ++ L
Sbjct: 591 MTLESPEEIQDVNSAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERL 645
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSDN 340
+ +S KLP +++ DG S N
Sbjct: 646 QAEWHDSDWILSVPAKLPEIEEYYDGNISSN 676
>gi|47218719|emb|CAG05691.1| unnamed protein product [Tetraodon nigroviridis]
Length = 727
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 105/248 (42%), Positives = 158/248 (63%), Gaps = 3/248 (1%)
Query: 10 HSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVS 68
H +G + +K A ++ AI+ + + ++ D+I VY+ G+ IVF +TK++A+E++
Sbjct: 364 HVDLIGKKTQKAATTVEHLAIACHWSQRAAVIGDVIRVYSGSHGRAIVFCETKKEANELA 423
Query: 69 LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP 128
L + +++LHGDI Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL++ P
Sbjct: 424 LNASIKQNAQSLHGDIPQKQRETTLKGFRKGSFEVLVATNVAARGLDIPEVDLVVQCSPP 483
Query: 129 NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS 188
D E+++HRSGRTGRAG+ G I + + +R +E G F V P D+++SS
Sbjct: 484 KDVESYIHRSGRTGRAGRTGICICFYQRKEEDQLRYVENKAGITFRRVGVPTANDIIKSS 543
Query: 189 AEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQ 247
++ V L+ + ++ +F A++LIEEKG DALAAALA +SG + RSL++ +
Sbjct: 544 SKDAVRFLDSISVAAIGYFREAAEKLIEEKGAVDALAAALAHISG-ATALEQRSLLSSDA 602
Query: 248 GWVTLQLT 255
G+ TLQLT
Sbjct: 603 GYTTLQLT 610
>gi|219119937|ref|XP_002180719.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408192|gb|EEC48127.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 822
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 114/294 (38%), Positives = 170/294 (57%), Gaps = 13/294 (4%)
Query: 52 GKTIVFTQTKRDADE-VSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 110
GKTIVFT+TKR+ADE VS + + ++ALHGD+ Q QR+ TL FR G F VLVATDVA
Sbjct: 436 GKTIVFTETKREADELVSGGVFKSLTAQALHGDVGQKQRDSTLAAFRSGAFNVLVATDVA 495
Query: 111 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV- 169
ARG+DI +VDL+I ++ P D +T+VHRSGRTGRAGK+G ++L+F Q R + +ERD+
Sbjct: 496 ARGIDIQDVDLVIQFDPPRDVDTYVHRSGRTGRAGKKGVSVLLFNQRQSRDIVRIERDLG 555
Query: 170 -GCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAAL 227
G KF+ V PP E L ++A+ + E+ EFF +A +L+E + D +A L
Sbjct: 556 HGFKFDLVGPPSAEATLNAAAKTSAIATQSIPEETAEFFKESAAKLLESQDPVDVVARCL 615
Query: 228 AQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD---- 283
A +S + SRSL+ + G+ T+++ + +G LS + D
Sbjct: 616 AAVSRRASEVQSRSLLTGQVGFATVEMVNERGRPVAANDVMFTIGKLSRMSNQEGDLAFD 675
Query: 284 -EIGKIHIIADDRVQGAVFDLPEEIAKELL--NKQIPPGNTISKITKLPALQDD 334
++G+I + VFD+ E AK L+ +K + G ++ K A++ D
Sbjct: 676 SQVGRIQ--TNSESGSVVFDMNVEDAKNLVKFSKTVDAGGAAFQLLKALAVERD 727
>gi|363735177|ref|XP_421574.3| PREDICTED: nucleolar RNA helicase 2-like [Gallus gallus]
Length = 760
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 132/364 (36%), Positives = 201/364 (55%), Gaps = 28/364 (7%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + ++ A ++ AI ++ + +L D+I VY+ G+TIVF +TK++A+E LAL
Sbjct: 409 IGKKTQRTATTVEHLAIQCRSSQRAEVLGDIIQVYSGSHGRTIVFCETKKEANE--LALN 466
Query: 73 SIIASEA--LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPND 130
S + EA LHGDI Q QRE TL GFR G F VL+AT+VAARGLDIP VDL+I P D
Sbjct: 467 SALKQEAQSLHGDIPQKQREVTLKGFRNGVFEVLIATNVAARGLDIPEVDLVIQCSPPKD 526
Query: 131 PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE 190
++++HRSGRTGRAG+ G I + + ++ +E+ G F + P D++++S++
Sbjct: 527 VDSYIHRSGRTGRAGRTGICICFYQRKEEDLLKQVEQKAGITFRRIGVPSATDIIKASSD 586
Query: 191 QVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGW 249
L+ V P ++++F +A+ LIEEKG DALAAALA +SG S RSL+N G+
Sbjct: 587 DAKKCLDAVPPSAIDYFRQSARELIEEKGAVDALAAALAHISGASS-IQQRSLLNSTAGF 645
Query: 250 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEI-GKIHIIADDRVQ-GAVFDLP--- 304
VT+ L + + RS+ + +EI GKI + + + G FD+P
Sbjct: 646 VTMVL-------QCSIEMRSMSYAWRGLKEQLGEEIDGKISAMRFLKGKTGVCFDIPVDE 698
Query: 305 ----EEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSR 360
+E ++ Q+ + ++ + P GP +G F RF GG + R
Sbjct: 699 LSHIQEQWRDTRRWQLAVAKELPELEEQPQDASRGPP--RFGGFKKNGRF---GGWKQGR 753
Query: 361 GGAR 364
AR
Sbjct: 754 PPAR 757
>gi|118358020|ref|XP_001012258.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
gi|89294025|gb|EAR92013.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
SB210]
Length = 744
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 179/339 (52%), Gaps = 18/339 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGG--KTIVFTQTKRDADEVSLAL 71
V N K ++ + AI+ + + D+I Y G + I+F +TK +A+E+ L
Sbjct: 287 VKNLGNKTSQDVTHLAINCPYFQRTEAIGDVILCYGGGAHSRVIIFCETKNEANEIMLKA 346
Query: 72 TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 131
+ LHGDI Q QRE T GFR+GKF LVAT+VAARGLDIP VDLI+ E P +
Sbjct: 347 NIKQDVQVLHGDIPQKQREITFQGFREGKFKCLVATNVAARGLDIPEVDLIVQLEPPKEL 406
Query: 132 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 191
+ ++HRSGRTGRAGK+G I +T Q+ + +E+ K + V P D++ +S
Sbjct: 407 DAYIHRSGRTGRAGKKGVCITFYTKKQQSLIERIEKKCHIKMQKVGAPQPADLIRASQND 466
Query: 192 VVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWV 250
+ L V+ + F + LI+E G +AL A+A +SGF+ RSL+ +G+V
Sbjct: 467 IKKNLMSVNRTVLGIFKEVSVDLIQEFGPEEALERAIAFISGFTEKMKQRSLLCCLEGYV 526
Query: 251 TLQLTRDSAFSRGFMSARSVMGFLSDVYPT-AADEIGKIHIIADDRVQGAVFDLPEEIAK 309
T + S F RG + G++ + +P D I + AD++ GAVFD+ EE K
Sbjct: 527 TYIVRTPSEF-RGL---GYIWGWVKNNFPAECTDRIKGMKKFADNK--GAVFDVAEE-DK 579
Query: 310 ELLNKQI-------PPGNTISKITKLPALQDDGPSSDNY 341
E+ + I G + T +P ++++G S Y
Sbjct: 580 EVFDAYINELAEGTKQGLELEVATTIPEIEEEGGYSQGY 618
>gi|16716475|ref|NP_444413.1| ATP-dependent RNA helicase DDX50 [Mus musculus]
gi|55976576|sp|Q99MJ9.1|DDX50_MOUSE RecName: Full=ATP-dependent RNA helicase DDX50; AltName: Full=DEAD
box protein 50; AltName: Full=Gu-beta; AltName:
Full=Nucleolar protein Gu2
gi|13540306|gb|AAK29403.1|AF334104_1 nucleolar protein GU2 [Mus musculus]
Length = 734
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 122/331 (36%), Positives = 189/331 (57%), Gaps = 10/331 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 348 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 407
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 408 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 467
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G + + +R +R +E+ G F+ V P D+++S +
Sbjct: 468 SYIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 527
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 528 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 586
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS A + ++ ++ + G FD+P ++ L
Sbjct: 587 MTLESPEEIQDVSCAWKELNRKLSS---NAVSHVTRMCLLKGN--MGVCFDVPTSESERL 641
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSDN 340
+ +S KLP +++ DG +S N
Sbjct: 642 QAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 672
>gi|60551791|gb|AAH90996.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Mus musculus]
Length = 734
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 122/331 (36%), Positives = 189/331 (57%), Gaps = 10/331 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 348 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 407
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 408 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 467
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G + + +R +R +E+ G F+ V P D+++S +
Sbjct: 468 SYIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 527
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 528 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 586
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + + + LS A + ++ ++ + G FD+P ++ L
Sbjct: 587 MTLESPEEIQDVSCAWKELNRKLSS---NAVSHVTRMCLLKGN--MGVCFDVPTSESERL 641
Query: 312 LNKQIPPGNTISKITKLPALQD--DGPSSDN 340
+ +S KLP +++ DG +S N
Sbjct: 642 QAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 672
>gi|449667537|ref|XP_002167666.2| PREDICTED: nucleolar RNA helicase 2-like [Hydra magnipapillata]
Length = 543
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 116/326 (35%), Positives = 180/326 (55%), Gaps = 15/326 (4%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G K A ++ AI T + + + D+I Y+ K GKTI+FT TK++A+E LAL
Sbjct: 171 IGRDKNKGATTVEHKAIKCTYWDRPSTIKDIIQQYSGKFGKTIIFTSTKQEANE--LALN 228
Query: 73 SIIA--SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPND 130
S+I S+ LHGDI Q QRE TL FR GKF L+ATDVAARGLDIP VDL+I E P D
Sbjct: 229 SVINMDSQVLHGDIQQKQRELTLQSFRNGKFNCLIATDVAARGLDIPEVDLVIQTEPPKD 288
Query: 131 PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE 190
++++HR+GRTGRAG++G I+ + Q V ++E G F + P +D++ +SAE
Sbjct: 289 VDSYIHRAGRTGRAGRKGVCIIFYKPGQEYGVAAVEHKAGISFTRIGAPQQKDLIAASAE 348
Query: 191 QVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWV 250
V +L+ V + + +F A+ LIE++G + AA + +RS++ + G+
Sbjct: 349 DAVRSLDEVKEDVISYFLDCARDLIEKRGAEKALAAALAYISGTTEIVNRSMLTSQPGYT 408
Query: 251 TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKE 310
T + ++ + ++ + + D I + I D G VFD+P E K
Sbjct: 409 TYLMKQNLELRSTGLIWHTLRRYFDQTF---IDSIKGMRICKDKL--GCVFDVPTESIKV 463
Query: 311 LLNKQIPPGN---TISKITKLPALQD 333
+ ++ G+ T+ IT+LP L +
Sbjct: 464 I--EECWKGDKFSTLEPITELPELME 487
>gi|417412883|gb|JAA52800.1| Putative nucleolar rna helicase 2, partial [Desmodus rotundus]
Length = 840
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 140/402 (34%), Positives = 211/402 (52%), Gaps = 38/402 (9%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S +
Sbjct: 457 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNAS 516
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E
Sbjct: 517 IRQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVE 576
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 577 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDA 636
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN E G+VT
Sbjct: 637 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSESGFVT 695
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRV---------QGAVFD 302
+ + M +S + +++G+ D +V QG FD
Sbjct: 696 M-----------ILKCSIEMPNISYAWKELKEQLGE---EIDSKVKGMVFLKGKQGVCFD 741
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRG 361
+ E+ K +S T+ P L +GP + Y F + +R G R R
Sbjct: 742 VRTAAVTEIQEKWHDSRRWQLSVATEQPEL--EGP-REGYRNFRGQREGNR--GHRGQRE 796
Query: 362 GARG--GARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSF 401
G R G R G R FR RS G + F + RSF
Sbjct: 797 GNRNFRGQREGS----RNFRGQRSGGGSRNNRFQNKGQKRSF 834
>gi|407397666|gb|EKF27840.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi marinkellei]
Length = 634
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 113/323 (34%), Positives = 177/323 (54%), Gaps = 14/323 (4%)
Query: 13 QVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLAL 71
VG + A IK Y + +L+DL+ VY+ + G+T+VFT TK+D ++S+
Sbjct: 268 MVGQGTMRAAHTIKFYRRKCHFSEVSCMLADLVKVYSGRHGRTLVFTNTKKDCHDLSINN 327
Query: 72 TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 131
T + S+ LHGD+ Q QRE T+ FR KF+VL+ATDVAARGLD+P VDL+I P D
Sbjct: 328 TKL-DSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDI 386
Query: 132 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 191
+ F+HR+GRTGRAG++G +L+ V +ER KFE + P +++L + A
Sbjct: 387 DAFIHRAGRTGRAGRKGVCVLLHQPKDEYIVERIERHAKIKFEVLPAPTRDEILRAVARD 446
Query: 192 VVATLNGVHPESVEFFTPTAQRLIEEK-GTDALAAALAQLSGFSRPPSSRSLINHEQGWV 250
L V + F A L+++ T+ LA+A+A +SG++ + R LI +G V
Sbjct: 447 AAEDLARVERSATNLFMEQAAELLKDADATEILASAIAVMSGYTSSITRRGLITGAKGSV 506
Query: 251 TLQLTRDSAFSRGFMSA--RSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIA 308
T+Q+ + R+ +G +++ D I ++ + G VFD+PEE+A
Sbjct: 507 TIQMLGQRTLPIPVFCSILRNSLG--DNLFTRCRD----ITLLQES--PGCVFDVPEEVA 558
Query: 309 KELLNKQIPPGNTISKITKLPAL 331
++L+ I G +S I LP +
Sbjct: 559 DQILSTPI-RGMELSVIETLPPI 580
>gi|417404608|gb|JAA49048.1| Putative nucleolar rna helicase 2 [Desmodus rotundus]
Length = 785
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 140/402 (34%), Positives = 211/402 (52%), Gaps = 38/402 (9%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S +
Sbjct: 402 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNAS 461
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E
Sbjct: 462 IRQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVE 521
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 522 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDA 581
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN E G+VT
Sbjct: 582 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSESGFVT 640
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRV---------QGAVFD 302
+ + M +S + +++G+ D +V QG FD
Sbjct: 641 M-----------ILKCSIEMPNISYAWKELKEQLGE---EIDSKVKGMVFLKGKQGVCFD 686
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRG 361
+ E+ K +S T+ P L +GP + Y F + +R G R R
Sbjct: 687 VRTAAVTEIQEKWHDSRRWQLSVATEQPEL--EGP-REGYRNFRGQREGNR--GHRGQRE 741
Query: 362 GARG--GARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSF 401
G R G R G R FR RS G + F + RSF
Sbjct: 742 GNRNFRGQREGS----RNFRGQRSGGGSRNNRFQNKGQKRSF 779
>gi|395501396|ref|XP_003755081.1| PREDICTED: nucleolar RNA helicase 2 [Sarcophilus harrisii]
Length = 798
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 106/243 (43%), Positives = 159/243 (65%), Gaps = 3/243 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI+ + + ++ D+I VY+ G+TI+F +TK++A E+SL +
Sbjct: 366 IGKKTQKAAVTVEHLAINCHWSQRAAVIGDVIQVYSGSHGRTIIFCETKKEAQELSLNES 425
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR GKF VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 426 IKQDAQSLHGDIPQKQREITLQGFRNGKFGVLVATNVAARGLDIPEVDLVIQSSPPKDVE 485
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + ++ + +ER G F+ V P +++++S++
Sbjct: 486 SYIHRSGRTGRAGRTGICICFYQKKEQHQLAQVERQAGITFKRVGVPSASEIIKASSKDA 545
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F TAQ+LI+EKG +ALAAALA +SG + RSLIN + G+VT
Sbjct: 546 IRFLDSVPPAAINNFRQTAQKLIDEKGAVEALAAALAHISGATT-VEQRSLINSDVGFVT 604
Query: 252 LQL 254
+ L
Sbjct: 605 MVL 607
>gi|224000281|ref|XP_002289813.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
gi|220975021|gb|EED93350.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
Length = 466
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 100/227 (44%), Positives = 148/227 (65%), Gaps = 8/227 (3%)
Query: 34 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADE-VSLALTSIIASEALHGDISQHQRERT 92
A +K+ IL D+I ++ GKTIVFT+TK++ADE VS ++ ++++A+HGDI Q QR+ T
Sbjct: 236 ADAKKAILEDIIALF---GKTIVFTETKKEADELVSGSVFKTLSAQAIHGDIGQKQRDAT 292
Query: 93 LNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 152
L FR G F VLVATDVAARG+DI +VDL+I +E P D +T+VHRSGRTGRAG G ++L
Sbjct: 293 LAAFRAGAFNVLVATDVAARGIDIKDVDLVIQFEPPRDVDTYVHRSGRTGRAGASGISVL 352
Query: 153 MFTSSQRRTVRSLERDV--GCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPT 210
+F +Q R + +E+ + G KFE + PP E L ++A+ GV E+ F
Sbjct: 353 LFQQNQARDIVRIEKSLGHGFKFELLGPPSTEAALNAAAKTSALACRGVADETAAHFKDA 412
Query: 211 AQRLIEEKGT--DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 255
A L+ G+ D +A LA ++ + +SRSL+ E+G+ T+++T
Sbjct: 413 AVSLLASSGSPEDVVARCLAAIARRTVQVNSRSLLTGEEGYATVEMT 459
>gi|326923426|ref|XP_003207937.1| PREDICTED: nucleolar RNA helicase 2-like [Meleagris gallopavo]
Length = 602
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 127/350 (36%), Positives = 196/350 (56%), Gaps = 25/350 (7%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + ++ A ++ AI ++ + +L D+I VY+ G+TIVF +TK++A+E LAL
Sbjct: 251 IGKKTQRTATTVEHLAIQCRSSQRVEVLGDIIQVYSGSHGRTIVFCETKKEANE--LALN 308
Query: 73 SIIASEA--LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPND 130
S + EA LHGDI Q QRE TL GFR G F VL+AT+VAARGLDIP VDL+I P D
Sbjct: 309 SALKQEAQSLHGDIPQKQREITLKGFRNGVFEVLIATNVAARGLDIPEVDLVIQCSPPKD 368
Query: 131 PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE 190
++++HRSGRTGRAG+ G I + + ++ +E+ G F + P +++++S++
Sbjct: 369 VDSYIHRSGRTGRAGRAGICICFYQRKEEDLLKQVEQKAGITFRRIGVPSATEIIKASSD 428
Query: 191 QVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGW 249
L+ V P ++++F +A+ LIEEKG DALAAALA +SG S RSL+N G+
Sbjct: 429 DAKKCLDAVPPSAIDYFRQSARELIEEKGAVDALAAALAHISGAS-SIQQRSLLNSTAGF 487
Query: 250 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEI-GKIHIIADDR-VQGAVFDLP--- 304
VT+ L + + RS+ + +EI GKI + + G FD+P
Sbjct: 488 VTMVL-------KCSIEMRSMSYAWRGLKEQLGEEIDGKISAMRFLKGKMGVCFDIPVDE 540
Query: 305 ----EEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRF 350
+E ++ Q+ + ++ + P + GPS +G F RF
Sbjct: 541 LSHIQEQWRDTRRWQLAVAKELPELEEQPQDANRGPS--RFGSFKKNGRF 588
>gi|410975243|ref|XP_003994043.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Felis catus]
Length = 645
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 115/293 (39%), Positives = 173/293 (59%), Gaps = 8/293 (2%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 353 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 412
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 413 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 472
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 473 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 532
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 533 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 591
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLP 304
+ L + + + LS A +I ++ ++ + G FD+P
Sbjct: 592 MTLESPEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVP 639
>gi|311271292|ref|XP_003133100.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Sus scrofa]
Length = 738
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 155/243 (63%), Gaps = 3/243 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 352 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 411
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 412 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 471
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 472 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 531
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 532 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 590
Query: 252 LQL 254
+ L
Sbjct: 591 MTL 593
>gi|75319612|sp|Q41382.1|RH7_SPIOL RecName: Full=DEAD-box ATP-dependent RNA helicase 7
gi|1488647|emb|CAA68193.1| RNA helicase [Spinacia oleracea]
Length = 685
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 119/324 (36%), Positives = 180/324 (55%), Gaps = 14/324 (4%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
V +Q K + ++ I +A+++ ++ D+I Y GG++I+FT+TK A +++ LT
Sbjct: 324 VSDQKMKASISVRHIVIPCSASARPDLIPDIIRCYGSGGRSIIFTETKESASQLAGLLT- 382
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ LHGDI Q QRE TL GFR GKF LVAT+VAARGLDI +V LII E P D E
Sbjct: 383 --GARPLHGDIQQTQREVTLKGFRTGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVED 440
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG G A++++ +R +V +ER+ G KFE +S P DV ++ +
Sbjct: 441 YIHRSGRTGRAGNTGVAVMLY-DPKRSSVTKIERESGVKFEHLSAPQPVDVAKAVGIEAA 499
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWV 250
A + + + F A+ L+ G D L+ ALA+ +G+S RSL+ +G+V
Sbjct: 500 AAILQISDSVIPAFKDAAEELLSTSGLSAVDILSKALAKAAGYSD-IKERSLLTGMEGYV 558
Query: 251 TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLP-EEIAK 309
TL L F + + FL T AD I + + AD GAVFD+P +++
Sbjct: 559 TLLLDAGRPFYGQSFAYTVLKRFLP---ATKADSIMGVALTADK--SGAVFDVPVDDLET 613
Query: 310 ELLNKQIPPGNTISKITKLPALQD 333
L+ + G + + LP L++
Sbjct: 614 FLVGAENAAGVNLDVVKALPPLEE 637
>gi|296220525|ref|XP_002756346.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 3 [Callithrix
jacchus]
Length = 643
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 155/243 (63%), Gaps = 3/243 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 351 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 410
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 411 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 470
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 471 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 530
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 531 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 589
Query: 252 LQL 254
+ L
Sbjct: 590 MTL 592
>gi|325183265|emb|CCA17723.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
gi|325183911|emb|CCA18369.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 660
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 123/342 (35%), Positives = 189/342 (55%), Gaps = 23/342 (6%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALT 72
V + D++ + ++ AI S+ T+L+ L+ VY K +TI+F +TK+D +E+S+
Sbjct: 307 VQDSDDQASLDVQHVAIPCHWQSRPTLLASLLGVYGKQNARTIIFAETKKDCNELSVHPE 366
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN--- 129
LHGDI+Q QRE T+ FR G+ +L+ATDVAARGLD+ NVDL+I+ E P
Sbjct: 367 IKQDCHVLHGDIAQAQRETTMKAFRDGQIRLLIATDVAARGLDM-NVDLVINSEPPRKAS 425
Query: 130 ---DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 186
D +T+VHRSGRTGRAGK+G I ++T Q+ + +ER +G KF P E++++
Sbjct: 426 GYADVDTYVHRSGRTGRAGKKGVCITLYTPRQKELLDLIERKIGNKFIMRDQPSQEELIK 485
Query: 187 SSAEQVVATLNGVHPESVEFFTPTAQRLIE-EKGTDALAAALAQLSGFSRPPSSRSLINH 245
SAE+ +++ V P + F A+ +E + ALA ALA ++G + PP SL++
Sbjct: 486 VSAEKAFKSMDQVDPVMIAIFEEKAEEYLENHEPKKALAVALACITGHATPPRPHSLMSG 545
Query: 246 EQGWVTLQLTRDSAF-SRGFMSARSVMGFLS-DVYPTAADEIGKIHIIADDRVQGAVFDL 303
+VT+ T ++G+ V L+ D P A+ I ++ I D GA FDL
Sbjct: 546 TPDYVTVLFTSSKEIRAKGY-----VWNALNRDFDPEVANNIKQLTITQDSY--GACFDL 598
Query: 304 P----EEIAKELLNKQIPPGNTISKI-TKLPALQDDGPSSDN 340
P E++ + + + Q N I T LP LQ S+ N
Sbjct: 599 PMSAREKLQEIMSSSQQDRYNCPYSIPTTLPKLQQSQYSNQN 640
>gi|332834199|ref|XP_003312636.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pan
troglodytes]
gi|397489928|ref|XP_003815963.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pan
paniscus]
Length = 643
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 155/243 (63%), Gaps = 3/243 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 351 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 410
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 411 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 470
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 471 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 530
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 531 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 589
Query: 252 LQL 254
+ L
Sbjct: 590 MTL 592
>gi|332218198|ref|XP_003258246.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Nomascus
leucogenys]
Length = 643
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 155/243 (63%), Gaps = 3/243 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 351 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 410
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 411 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 470
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 471 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 530
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 531 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 589
Query: 252 LQL 254
+ L
Sbjct: 590 MTL 592
>gi|395741709|ref|XP_003777630.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pongo
abelii]
gi|194374303|dbj|BAG57047.1| unnamed protein product [Homo sapiens]
Length = 643
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 155/243 (63%), Gaps = 3/243 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 351 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 410
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 411 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 470
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 471 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 530
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 531 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 589
Query: 252 LQL 254
+ L
Sbjct: 590 MTL 592
>gi|432106714|gb|ELK32366.1| ATP-dependent RNA helicase DDX50 [Myotis davidii]
Length = 721
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 155/243 (63%), Gaps = 3/243 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 350 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 409
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 410 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 469
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 470 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 529
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 530 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 588
Query: 252 LQL 254
+ L
Sbjct: 589 MTL 591
>gi|426255666|ref|XP_004021469.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Ovis aries]
Length = 644
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 155/243 (63%), Gaps = 3/243 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 352 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 411
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 412 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 471
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 472 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 531
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 532 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 590
Query: 252 LQL 254
+ L
Sbjct: 591 MTL 593
>gi|417515609|gb|JAA53623.1| DEAD (Asp-Glu-Ala-Asp) box helicase 21 [Sus scrofa]
Length = 784
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 140/401 (34%), Positives = 211/401 (52%), Gaps = 36/401 (8%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 401 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGYQGRTIIFCETKKEAQELSQNAA 460
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E
Sbjct: 461 VRQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSCPPKDVE 520
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 521 SYIHRSGRTGRAGRTGICICFYQHKEEYQLTLVEQKAGIKFKRIGVPSPTEIIKASSKDA 580
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT
Sbjct: 581 IRLLDSVPPTAIGHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSDAGFVT 639
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRV---------QGAVFD 302
+ + M +S + +++G+ D +V QG FD
Sbjct: 640 M-----------ILRCSIEMPNISYAWKELKEQLGE---DIDSKVKGMVFLKGKQGVCFD 685
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRG 361
+P E+ K +S T+ P L +GP + Y F R R GG F RG
Sbjct: 686 IPTAAVTEVQEKWHDSRRWQLSVATEQPEL--EGP-REGYRSF----RGQREGGRGF-RG 737
Query: 362 GARGGARGGGSMD-RRGFRSSRSWGSDDEDGFSSSRGGRSF 401
+G G + R FR RS G + F + RSF
Sbjct: 738 QQKGNRSFRGQREGNRNFRGQRSGGGSRSNRFQNKGQKRSF 778
>gi|338716830|ref|XP_003363525.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Equus
caballus]
Length = 644
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 155/243 (63%), Gaps = 3/243 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 352 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 411
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 412 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 471
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S +
Sbjct: 472 SYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 531
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT
Sbjct: 532 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVT 590
Query: 252 LQL 254
+ L
Sbjct: 591 MTL 593
>gi|328774195|gb|EGF84232.1| hypothetical protein BATDEDRAFT_84954 [Batrachochytrium
dendrobatidis JAM81]
Length = 764
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 158/254 (62%), Gaps = 7/254 (2%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGG--KTIVFTQTKRDADEVSLAL 71
+G +K + +K YAI++ ++ +L D++ +Y +GG +TI+F +TK +A+E+++
Sbjct: 365 IGTDKQKTSATVKHYAIASHWQNRSALLGDIVAIYGRGGAGRTIIFVETKGEANELAMND 424
Query: 72 TSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPND 130
+ + ++ LHGDI Q QRE T+ GFR+GKFT L+ T+V ARG+DIP VDL+I+ E P+D
Sbjct: 425 KLVTMGTQVLHGDIQQKQREVTMQGFREGKFTSLITTNVCARGVDIPEVDLVINCEPPSD 484
Query: 131 PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE 190
E+++HRSGRTGRAGK G + + +Q ++++ R G F + P +D++ + A
Sbjct: 485 VESYIHRSGRTGRAGKSGICVTFYKPNQEYALQNIARHAGVNFIKIGAPQPKDIVAARAS 544
Query: 191 QVVATLNGVHPESV-EFFTPTAQRLIEE---KGTDALAAALAQLSGFSRPPSSRSLINHE 246
+ T+ E V E+FT A ++E AL+A LA L ++P ++RS+++
Sbjct: 545 DTLETVKTDLDERVLEYFTNCAGDILEHFQGDAIKALSATLAVLCNTTKPLATRSILSAN 604
Query: 247 QGWVTLQLTRDSAF 260
+G++TL T DS
Sbjct: 605 EGFITLLFTVDSPI 618
>gi|350592792|ref|XP_001928807.4| PREDICTED: LOW QUALITY PROTEIN: nucleolar RNA helicase 2 [Sus
scrofa]
Length = 844
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 140/401 (34%), Positives = 211/401 (52%), Gaps = 36/401 (8%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 461 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGYQGRTIIFCETKKEAQELSQNAA 520
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E
Sbjct: 521 VRQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSCPPKDVE 580
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 581 SYIHRSGRTGRAGRTGICICFYQHKEEYQLTLVEQKAGIKFKRIGVPSPTEIIKASSKDA 640
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT
Sbjct: 641 IRLLDSVPPTAIGHFKQSAEKLIEEKGAVEALAAALAHISGAT-SVDQRSLINSDAGFVT 699
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRV---------QGAVFD 302
+ + M +S + +++G+ D +V QG FD
Sbjct: 700 M-----------ILRCSIEMPNISYAWKELKEQLGE---DIDSKVKGMVFLKGKQGVCFD 745
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRG 361
+P E+ K +S T+ P L +GP + Y F R R GG F RG
Sbjct: 746 IPTAAVTEVQEKWHDSRRWQLSVATEQPEL--EGP-REGYRSF----RGQREGGRGF-RG 797
Query: 362 GARGGARGGGSMD-RRGFRSSRSWGSDDEDGFSSSRGGRSF 401
+G G + R FR RS G + F + RSF
Sbjct: 798 QQKGNRSFRGQREGNRNFRGQRSGGGSRSNRFQNKGQKRSF 838
>gi|291297189|ref|YP_003508587.1| DEAD/DEAH box helicase [Meiothermus ruber DSM 1279]
gi|290472148|gb|ADD29567.1| DEAD/DEAH box helicase domain protein [Meiothermus ruber DSM 1279]
Length = 556
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 130/354 (36%), Positives = 202/354 (57%), Gaps = 32/354 (9%)
Query: 29 AISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHGDISQH 87
AI ++ ++LSDL+ YA +TIVFT TK + ++++L L S S A +HGD+ Q
Sbjct: 217 AIQAPIHNRLSVLSDLLFAYAPE-RTIVFTSTKAECNDLALGLESRAHSAAPIHGDMGQI 275
Query: 88 QRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE 147
RER + FR G +VLVATDVAARGLDIP VDL++HY LP+ E+++HRSGRTGRAG+
Sbjct: 276 DRERVMERFRSGAVSVLVATDVAARGLDIPEVDLVVHYRLPDQNESYLHRSGRTGRAGRS 335
Query: 148 GTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES-VEF 206
G ++++ ++R + +LER++ F+ V+PP E+V+ ++ ++A PE+ +
Sbjct: 336 GKVVILYGPREKRELETLERELKRNFKRVNPPTPEEVM-AAKWAMLARRIAKQPEADKKL 394
Query: 207 FTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMS 266
+ A+RLI E G DA+A LA + G + P+ +SL+ E+ WVT++L A SR +S
Sbjct: 395 WREQAERLIAEGGVDAVAGMLALILGGA--PTPKSLMTGEENWVTVKL----AGSR--IS 446
Query: 267 ARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKIT 326
+ L A EIG+I + D V V PE++++ L+ ++K +
Sbjct: 447 VNRAVAVLKS---AGAGEIGRIRL--DGDVAAYVDIRPEDLSR--LDHTALRDLRLTKAS 499
Query: 327 KLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRS 380
++PA + S+ G+ F+RG G R + G R G S R F S
Sbjct: 500 EVPA---ETRQSERQGQG-----FARGQGKRQGQ-----GRREGSSQRERPFES 540
>gi|432106715|gb|ELK32367.1| Nucleolar RNA helicase 2 [Myotis davidii]
Length = 799
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 140/402 (34%), Positives = 212/402 (52%), Gaps = 38/402 (9%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S +
Sbjct: 417 IGKRTQKAAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNTS 476
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F V+VAT+VAARGLDIP VDL+I P D E
Sbjct: 477 MKQDAQSLHGDIPQKQREITLKGFRNGDFGVMVATNVAARGLDIPEVDLVIQCSPPKDVE 536
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 537 SYIHRSGRTGRAGRTGICICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDA 596
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN E G+VT
Sbjct: 597 IRFLDSVPPTAINHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSEAGFVT 655
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FD 302
+ + M +S + +++G+ D +V+G V FD
Sbjct: 656 M-----------ILKCSIEMPNISYAWKELKEQLGE---DIDSKVKGMVFLKGKEGVCFD 701
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRG 361
+ E + K +S T+ P L +GP G S R + G R R
Sbjct: 702 VRTEAVTGIQEKWHDSRRWQLSVATEQPEL--EGPRE---GFRSFRGQREGNRGFRGQRD 756
Query: 362 GARG--GARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSF 401
G+R G R G R FR RS G + + F + RSF
Sbjct: 757 GSRNFRGQRDGN----RNFRGQRSGGGNRNNRFQNKGQKRSF 794
>gi|194205947|ref|XP_001917975.1| PREDICTED: nucleolar RNA helicase 2 [Equus caballus]
Length = 785
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 131/370 (35%), Positives = 203/370 (54%), Gaps = 37/370 (10%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ +TI+F +TK++A E+S +++
Sbjct: 402 IGKKTQKTAMTVEHLAIKCHWTQRAAVIGDVIRVYSGYQRRTIIFCETKKEAQELSQSVS 461
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+ +++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 462 IKLDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVE 521
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 522 SYIHRSGRTGRAGRTGICICFYQHKEEHQLAQVEQKAGIKFKRIGVPSATEIIKASSKDA 581
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT
Sbjct: 582 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSDAGFVT 640
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRV---------QGAVFD 302
+ + M +S + +++G+ D +V QG FD
Sbjct: 641 M-----------ILRCSIEMHNISYAWKELKEQLGE---DIDSKVKGMVFLKGKQGVCFD 686
Query: 303 LPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRG 361
+P A ++ K +S T+ P L +GP + G RD GSR RG
Sbjct: 687 VPTAAAADVQEKWHDSRRWQLSVATEQPEL--EGPREGSRGFRGQRD------GSRGFRG 738
Query: 362 GARG--GARG 369
G G+RG
Sbjct: 739 RREGNRGSRG 748
>gi|449016019|dbj|BAM79421.1| nucleolar RNA helicase II/Gu [Cyanidioschyzon merolae strain 10D]
Length = 748
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 123/330 (37%), Positives = 180/330 (54%), Gaps = 37/330 (11%)
Query: 14 VGNQDEKLAEGIKLYAISTTAT--SKRTILSDLITVYAKGG--KTIVFTQTKRDADEVSL 69
VG + + A+ ++ A+ ++ +L D++ +A+ G + IVFT TKR+ADE+++
Sbjct: 319 VGRTETRAAKNVRHVAVRVPDADFARFAMLEDIVFAHAETGNQRCIVFTDTKREADEIAM 378
Query: 70 ALTSIIAS--EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 127
+ +S + LHGD+SQ QRE TL FR G+F++LVATDVAARGLDI VD+I+
Sbjct: 379 TASIFRSSVAQVLHGDVSQRQRELTLQQFRDGRFSILVATDVAARGLDIHEVDVIVQMRP 438
Query: 128 PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 187
P D +T++HR+GRTGRAG+ GTA++M++ S+R +R+LER +FE PP +E VL+
Sbjct: 439 PRDVDTYIHRAGRTGRAGRSGTAVIMYSDSERGLLRALERGASIRFEQAGPPTLERVLDV 498
Query: 188 SAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ-------------LSGFS 234
+A+ V S P QR D LAAA + +SG +
Sbjct: 499 AAQNAA---RAVGEASTNRVVPYFQR-----AADELAAAQFEGDARRALAAALAVISGRT 550
Query: 235 RPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGF---LSDVYPTAADEIGKIHII 291
RSL+ E G TL LT +R ++ R V+G LS D+IGK+ +
Sbjct: 551 H-IEHRSLLTGEAGLRTLLLT----MNRAGVTPRDVLGIVRRLSQSGKLFTDDIGKVRLC 605
Query: 292 ADDRVQGAVFDLPEEIAKELLNKQIPPGNT 321
D R AVFD+ E A E+L P T
Sbjct: 606 RDPR--QAVFDVSVEAADEILRCMEPQSTT 633
>gi|356535937|ref|XP_003536498.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Glycine max]
Length = 697
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 124/338 (36%), Positives = 182/338 (53%), Gaps = 21/338 (6%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VGN K + ++ + T++++ ++ D+I Y+ GG+TIVFT+TK A +++ L
Sbjct: 335 VGNTKMKASTNVRHIVLPCTSSARAQLIPDIIRCYSSGGRTIVFTETKECASQLAGILN- 393
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
++ALHGDI Q RE TL+GFR GKF LVAT+VAARGLDI +V LII E P D E
Sbjct: 394 --GAKALHGDIQQSTREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEA 451
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG G A++++ +R + +ER+ G KFE VS P +D+ ++ + +
Sbjct: 452 YIHRSGRTGRAGNTGVAVMLY-DPKRSNIPRIERESGVKFEHVSAPQPDDIAKAVSGEAA 510
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWV 250
+ V V F A+ L+ G + LA ALA+ G++ RSL+ + +V
Sbjct: 511 EMIIQVSDSVVPAFKSAAEELLNSSGLPVIELLAKALAKAVGYTD-VKQRSLLTSMENYV 569
Query: 251 TLQLTRDSAF---SRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEI 307
TL L S G+ R FL + + + + + AD G VFD+P +
Sbjct: 570 TLVLETGKPIYTQSYGYSILRR---FLPE---EKVEAVKGLSLTADG--NGVVFDVPAKD 621
Query: 308 AKELLNKQIPPGNTISKITK-LPALQDDGPSSDNYGRF 344
LN Q N ++ K LP LQ P S GRF
Sbjct: 622 LDIYLNGQENASNVCLEVVKTLPQLQQKEPQSRG-GRF 658
>gi|71409597|ref|XP_807135.1| nucleolar RNA helicase II [Trypanosoma cruzi strain CL Brener]
gi|70871069|gb|EAN85284.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
Length = 633
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 111/322 (34%), Positives = 176/322 (54%), Gaps = 14/322 (4%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG + A IK Y + +L+DL+ VY+ + G+T+VFT TK++ ++S+ T
Sbjct: 269 VGQGTMRAANTIKFYRRKCHFSEVSCMLADLVKVYSGRHGRTLVFTNTKKECHDLSINNT 328
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+ S+ LHGD+ Q QRE T+ FR KF+VL+ATDVAARGLD+P VDL+I P D +
Sbjct: 329 KL-DSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDID 387
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
F+HR+GRTGRAG++G +L+ V +ER KFE + P +++L + A
Sbjct: 388 AFIHRAGRTGRAGRKGVCVLLHQPKDEYIVERIERHAKIKFEVLPAPTRDEILRAVARDA 447
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEK-GTDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
L V + F A L+++ T+ LA+A+A +SG++ + R LI +G VT
Sbjct: 448 AEDLARVERSATNLFMEQAAELLKDADATEILASAIAVMSGYTSSITRRGLITGAKGSVT 507
Query: 252 LQLTRDSAFSRGFMSA--RSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAK 309
+Q+ + R+ +G +++ D I ++ + G VFD+PEE+A
Sbjct: 508 IQMLGQRTLPIPVFCSILRNSLG--DNLFTRCRD----ITLLQES--PGCVFDVPEEVAD 559
Query: 310 ELLNKQIPPGNTISKITKLPAL 331
++L+ I G + I LP +
Sbjct: 560 QILSAPI-RGMQLGVIETLPPI 580
>gi|60551600|gb|AAH91427.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Rattus norvegicus]
Length = 380
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 183/316 (57%), Gaps = 10/316 (3%)
Query: 29 AISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQH 87
AI + + ++ D++ VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q
Sbjct: 9 AIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQS 68
Query: 88 QRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE 147
QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+
Sbjct: 69 QREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRT 128
Query: 148 GTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFF 207
G + + +R +R +E+ G F+ V P D+++S + + +L V +V+FF
Sbjct: 129 GICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFF 188
Query: 208 TPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMS 266
P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+ L +
Sbjct: 189 RPSAQRLIEEKGAVDALAAALAHISGASS-FEPRSLITSDKGFVTMTLESPEEIQDVSCA 247
Query: 267 ARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKIT 326
+ + LS A ++ ++ ++ + G FD+P ++ L + +S
Sbjct: 248 WKELNRKLSS---NAVSQVTRMCLLKGN--MGVCFDVPTSESERLQAEWHDSDWILSVPA 302
Query: 327 KLPALQD--DGPSSDN 340
KLP +++ DG +S N
Sbjct: 303 KLPEIEEYYDGNTSSN 318
>gi|348672301|gb|EGZ12121.1| hypothetical protein PHYSODRAFT_547952 [Phytophthora sojae]
Length = 654
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 178/332 (53%), Gaps = 33/332 (9%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG++D ++ + AI+ + +L +++ ++A G+T+VFT+TK++ADE++ +L
Sbjct: 260 VGDEDNQVPATVAHKAINAPVRDRIQVLENVLRLHAHDGQTLVFTETKQEADEIANSLPG 319
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
A ALHGD+SQ R T++GFR G LV TD+AARGLDI NV+L++ Y LP+D E+
Sbjct: 320 QDA-RALHGDLSQGMRTSTMSGFRNGHVKTLVCTDIAARGLDIANVELVVQYRLPSDKES 378
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHR+GRTGRAG+ GT I+ F V ER KF +PP E ++E + E V
Sbjct: 379 FVHRAGRTGRAGRSGTNIVFFDGRDASDVLDFERRYKFKFAHAAPPHPEQMIEGALEDVN 438
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGF-SRPPSSRSLINHEQGWVTL 252
L + + + F AQ +IE++G L+AALA L GF S+ ++ S++ T+
Sbjct: 439 KQLTSLPKANAQLFDEAAQAMIEQQGPGVLSAALALLCGFDSKKLTTLSMLTGRFRMQTV 498
Query: 253 QLTRDSAFSRGFMSARSVMGFLS-------DVYPTAADEIGKIHIIADDRVQGAVFDLPE 305
Q+ G +AR + LS D+YP GK+ VFD+P+
Sbjct: 499 QV-------EGVQNARELNRLLSSFMDDRVDIYPVDG---GKL-----------VFDIPQ 537
Query: 306 ---EIAKELLNKQIPPGNTISKITKLPALQDD 334
E +E L T++ + P L D
Sbjct: 538 GKLESLQEHLTASSDDEVTVTAAVEFPRLLMD 569
>gi|417404458|gb|JAA48981.1| Putative nucleolar rna helicase 2 [Desmodus rotundus]
Length = 765
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 110/290 (37%), Positives = 172/290 (59%), Gaps = 17/290 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S +
Sbjct: 402 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNAS 461
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E
Sbjct: 462 IRQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVE 521
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 522 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDA 581
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN E G+VT
Sbjct: 582 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSESGFVT 640
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVF 301
+ + M +S + +++G+ D +V+G VF
Sbjct: 641 M-----------ILKCSIEMPNISYAWKELKEQLGE---EIDSKVKGMVF 676
>gi|110430646|gb|ABG73436.1| DEAD/DEAH box helicase family protein [Oryza brachyantha]
Length = 688
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 127/340 (37%), Positives = 183/340 (53%), Gaps = 21/340 (6%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG++ K + ++ A+ ++ ++ D+I Y++GG+TI+FT+TK A E+S
Sbjct: 322 VGDEKLKASASVRHLALPCNRAARAQVIPDIIRCYSRGGRTIIFTETKESASELS---GL 378
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
I S ALHGD++Q QRE L GFR GKF VLVAT+VAARGLDI +V LII E P D E
Sbjct: 379 IAGSRALHGDVAQAQREVILAGFRSGKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEA 438
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG G A+++F + V +ER+ G KFE +S P DV +S+ +
Sbjct: 439 YIHRSGRTGRAGNTGVAVMLFDPRHKFNVNRIERESGVKFEHISAPQPTDVAQSAGSEAA 498
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS---GFSRPPSSRSLINHEQGWV 250
+ V + F A++L+ G A L+ G++ RSL++ +
Sbjct: 499 EAIASVSDSVIPVFREQAEQLLSSSGMSAADLLAKALAKAVGYTDI-KKRSLLSSMENHT 557
Query: 251 TLQL-TRDSAFSRGFMSARSVMGFLSDVYPTA--ADEIGKIHIIADDRVQGAVFDLPE-E 306
TL L T S ++ GF V+ L P AD G I + AD GAVFD+P E
Sbjct: 558 TLLLQTGRSVYAPGF-----VLSTLKRFMPEERLADVKG-ITLTADG--TGAVFDVPSAE 609
Query: 307 IAKELLNKQIPPGNTISKITKLPALQ--DDGPSSDNYGRF 344
+ + + TI ++ +LP LQ D S+ GRF
Sbjct: 610 VEDYIQGSENAAMVTIEEVKQLPPLQERDQSRGSNGGGRF 649
>gi|72389634|ref|XP_845112.1| nucleolar RNA helicase II [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62176655|gb|AAX70758.1| nucleolar RNA helicase II, putative [Trypanosoma brucei]
gi|62360172|gb|AAX80591.1| nucleolar RNA helicase II, putative [Trypanosoma brucei]
gi|70801646|gb|AAZ11553.1| nucleolar RNA helicase II, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261328479|emb|CBH11456.1| nucleolar RNA helicase Gu, putative [Trypanosoma brucei gambiense
DAL972]
Length = 632
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 180/322 (55%), Gaps = 14/322 (4%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG + A I+ Y ++L+DL+ VY+ + G+T++FT TK+D ++S+ T
Sbjct: 261 VGQGAMRAANTIRFYRRKCGFAEVSSMLADLVKVYSGRHGRTLIFTNTKKDCHDLSINNT 320
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+ S+ LHGD+ Q QRE T+ FR KF+VL+ATDVAARGLD+P VDL+I P D +
Sbjct: 321 KL-DSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDID 379
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
F+HR+GRTGRAG++G +L+ V +ER KFE + P E++L++ A
Sbjct: 380 AFIHRAGRTGRAGRKGVCVLLHQPKDEYVVERIERHAKIKFEVLPAPTREEILKAVARDA 439
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ V + F A L+++ T+ LA+A+A +SG++ + R LI+ +G T
Sbjct: 440 AEDMARVERSATNLFMDQAAELLKDADPTEILASAIAVMSGYTSSITKRGLISGARGSAT 499
Query: 252 LQ-LTRDSAFSRGFMSA-RSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAK 309
+Q L + S + F S R+ +G +++ D I ++ D G VFD+PE++
Sbjct: 500 VQMLGQRSLPTHVFCSILRNNLG--DELFMRCRD----ITLLQD--APGCVFDVPEDVVD 551
Query: 310 ELLNKQIPPGNTISKITKLPAL 331
+LN + G +S I LP +
Sbjct: 552 RILNTPV-QGMELSVIETLPPI 572
>gi|390333037|ref|XP_786504.3| PREDICTED: nucleolar RNA helicase 2-like [Strongylocentrotus
purpuratus]
Length = 751
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/248 (40%), Positives = 143/248 (57%), Gaps = 1/248 (0%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG K A ++ AI+ + + ++SD+I VY G+ +VF +TKRDA+E++++
Sbjct: 335 VGRDRMKTATTVQHLAINCSYFDRPQVISDVIKVYGGLDGRCMVFCETKRDANELAMSSD 394
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ +HGDI Q QRE TL GFR+GKF LV TDVAARGLDIP VDL+I P D +
Sbjct: 395 VKQETQVMHGDIPQTQREVTLKGFREGKFQCLVTTDVAARGLDIPEVDLVIQCNPPRDVD 454
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G + + + R ++ +E G KF+ VS P D+++SS + V
Sbjct: 455 SYIHRSGRTGRAGRNGVCVCFYKRQEERDLQKVEYKAGIKFKRVSAPQPSDIIKSSVKDV 514
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 252
L V PE V F A+ +I EKG A AA S +RSL+ E+G T
Sbjct: 515 TDLLGAVQPEMVAMFKSAAEAIIAEKGAVAALAAALAHITGSTAMKTRSLLTAEEGKTTF 574
Query: 253 QLTRDSAF 260
L S
Sbjct: 575 LLETQSQL 582
>gi|356575902|ref|XP_003556075.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Glycine max]
Length = 693
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 123/325 (37%), Positives = 178/325 (54%), Gaps = 18/325 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VGN K + ++ + T++++ ++ D+I Y+ GG+TIVFT+TK A +++ LT
Sbjct: 330 VGNTKMKASINVRHIVLPCTSSARAQLIPDIIRCYSSGGRTIVFTETKESASQLAGILT- 388
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
++ALHGDI Q RE TL+GFR GKF LVAT+VAARGLDI +V LII E P D E
Sbjct: 389 --GAKALHGDIQQSTREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEA 446
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG G A++++ +R + +ER+ G KFE VS P +D+ ++ + +
Sbjct: 447 YIHRSGRTGRAGNTGVAVMLY-DPKRSNISRIERESGVKFEHVSAPQPDDIAKAVSGEAA 505
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWV 250
+ V V F A+ L+ G + LA ALA+ G++ RSL+ + +V
Sbjct: 506 EMIIQVSDSVVPAFKSAAEDLLNNSGLPVIELLAKALAKAVGYTE-VKQRSLLTSMENYV 564
Query: 251 TLQL-TRDSAFSRGFMSARSVMGFLSDVYPTAADEIGK-IHIIADDRVQGAVFDLPEEIA 308
TL L T +++ F G L P E K + I AD G VFD+ +
Sbjct: 565 TLLLETGKPIYTQSF-----AYGVLRRFLPEEKVEAVKGLSITADG--NGVVFDVAAKDL 617
Query: 309 KELLNKQIPPGNTISKITK-LPALQ 332
LN Q N +I K LP LQ
Sbjct: 618 DIYLNGQENASNVSLEIVKTLPQLQ 642
>gi|343470250|emb|CCD17000.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 633
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/325 (33%), Positives = 176/325 (54%), Gaps = 18/325 (5%)
Query: 13 QVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLAL 71
VG + + A IK + + ++L+DL+ VY+ + G+T++FT TK+D ++S+
Sbjct: 261 MVGQGEMRAANTIKFFRRKCGFSEVSSMLADLVKVYSGRHGRTLIFTNTKKDCHDLSINN 320
Query: 72 TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 131
T + S+ LHGD+ Q QRE T+ FR+ F+VL+ATDVAARGLD+P VDL+I P+D
Sbjct: 321 TKL-DSQCLHGDMQQDQRESTMKSFRENMFSVLIATDVAARGLDLPMVDLVIQCAPPSDI 379
Query: 132 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 191
+ F+HR+GRTGRAG++G +L+ V +ER KFE + P E++L++ A
Sbjct: 380 DAFIHRAGRTGRAGRKGVCVLLHQPRDEHIVERIERHANIKFEVLPAPTREEILKAVARD 439
Query: 192 VVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWV 250
+ V + F A L+++ T+ LA+A+A +SG++ + R LI +G
Sbjct: 440 AAEDMARVERSATNLFMEQAAELLKDADPTEILASAIAVMSGYTSSITKRGLITGAKGSA 499
Query: 251 TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEI----GKIHIIADDRVQGAVFDLPEE 306
T+Q+ + + F S + DE+ I ++ D G VFD+PEE
Sbjct: 500 TIQMLGQRSL--------PIPVFCSILRNNLGDELFTRCRDITLLQD--APGCVFDVPEE 549
Query: 307 IAKELLNKQIPPGNTISKITKLPAL 331
+ +L + G +S I LP +
Sbjct: 550 FVERILATPV-RGMELSVIESLPPI 573
>gi|342181264|emb|CCC90744.1| putative nucleolar RNA helicase II [Trypanosoma congolense IL3000]
Length = 633
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/325 (33%), Positives = 176/325 (54%), Gaps = 18/325 (5%)
Query: 13 QVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLAL 71
VG + + A IK + + ++L+DL+ VY+ + G+T++FT TK+D ++S+
Sbjct: 261 MVGQGEMRAANTIKFFRRKCGFSEVSSMLADLVKVYSGRHGRTLIFTNTKKDCHDLSINN 320
Query: 72 TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 131
T + S+ LHGD+ Q QRE T+ FR+ F+VL+ATDVAARGLD+P VDL+I P+D
Sbjct: 321 TKL-DSQCLHGDMQQDQRESTMKSFRENMFSVLIATDVAARGLDLPMVDLVIQCAPPSDI 379
Query: 132 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 191
+ F+HR+GRTGRAG++G +L+ V +ER KFE + P E++L++ A
Sbjct: 380 DAFIHRAGRTGRAGRKGVCVLLHQPRDEHIVERIERHANIKFEVLPAPTREEILKAVARD 439
Query: 192 VVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWV 250
+ V + F A L+++ T+ LA+A+A +SG++ + R LI +G
Sbjct: 440 AAEDMARVERSATNLFMEQAAELLKDADPTEILASAIAVMSGYTSSITKRGLITGAKGSA 499
Query: 251 TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEI----GKIHIIADDRVQGAVFDLPEE 306
T+Q+ + + F S + DE+ I ++ D G VFD+PEE
Sbjct: 500 TIQMLGQRSL--------PIPVFCSILRNNLGDELFTRCRDITLLQD--APGCVFDVPEE 549
Query: 307 IAKELLNKQIPPGNTISKITKLPAL 331
+ +L + G +S I LP +
Sbjct: 550 FVERILATPV-RGMELSVIESLPPI 573
>gi|354475482|ref|XP_003499957.1| PREDICTED: nucleolar RNA helicase 2-like [Cricetulus griseus]
Length = 806
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 155/243 (63%), Gaps = 3/243 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI + + ++ D+I VY+ G+TI+F +TKR+A E+S
Sbjct: 429 IGKKTQKAAITVEHLAIKCHWSERAAVIGDVIRVYSGHQGRTIIFCETKREAQELSQNTC 488
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E
Sbjct: 489 IKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVVQSCPPKDVE 548
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + +E+ G KF+ + P +++++S++
Sbjct: 549 SYIHRSGRTGRAGRTGVCICFYQHKDEYQLAQVEQKAGIKFKRIGVPSAAEIIKASSKDA 608
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P +++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT
Sbjct: 609 IRLLDSVPPTAIDHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSQAGFVT 667
Query: 252 LQL 254
+ L
Sbjct: 668 MIL 670
>gi|351702495|gb|EHB05414.1| Nucleolar RNA helicase 2 [Heterocephalus glaber]
Length = 777
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/250 (41%), Positives = 158/250 (63%), Gaps = 3/250 (1%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDAD 65
++ +G + +K A ++ AI T + ++ D+I VY+ G+TIVF +TK++A
Sbjct: 387 IYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIVFCETKKEAQ 446
Query: 66 EVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
E+S + +++LHGDI Q QRE TL GFR G F V+VAT+VAARGLDIP VDL++
Sbjct: 447 ELSQNASIKQDAQSLHGDIPQKQREITLKGFRNGDFGVMVATNVAARGLDIPEVDLVVQS 506
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 185
P D E+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++
Sbjct: 507 CPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSPTEII 566
Query: 186 ESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLIN 244
++S++ + L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN
Sbjct: 567 KASSKDAIRLLDSVPPTAIGHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLIN 625
Query: 245 HEQGWVTLQL 254
E G+VT+ L
Sbjct: 626 SEAGFVTMIL 635
>gi|395820929|ref|XP_003783808.1| PREDICTED: nucleolar RNA helicase 2 [Otolemur garnettii]
Length = 769
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 155/243 (63%), Gaps = 3/243 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK+DA E+S
Sbjct: 396 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTA 455
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E
Sbjct: 456 IKQDAQSLHGDIPQKQREITLKGFRNGAFGVLVATNVAARGLDIPEVDLVVQSCPPKDVE 515
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 516 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSPTEIIKASSKDA 575
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT
Sbjct: 576 IRLLDSVPPTAINHFKESAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSDVGFVT 634
Query: 252 LQL 254
+ L
Sbjct: 635 MIL 637
>gi|384496820|gb|EIE87311.1| hypothetical protein RO3G_12022 [Rhizopus delemar RA 99-880]
Length = 665
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 176/330 (53%), Gaps = 16/330 (4%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
+GN + I+ A+ ++ ++ I+ D++ VY + G T++F TK DA+E+
Sbjct: 286 IGNAKNRTNTNIRHIAMPSSYHTRADIIGDVVNVYGRSGLTVIFCATKADANELGAHDKI 345
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ LHGDI+Q RE T+ FR+GK+ +V TDV ARGLDIP VDL+I+ + P DPET
Sbjct: 346 KQDAAVLHGDIAQASREATMKAFREGKYKCIVCTDVLARGLDIPQVDLVINCQPPKDPET 405
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
+VHRSGRTGRAG+ G + + ++ + + + G +FE +S P ED++E++ E
Sbjct: 406 YVHRSGRTGRAGRSGVCVTFYKPAEEGLLSYISKRTGVQFEQLSAPRPEDIIEATTEDAF 465
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ-LSGFSRPPSSRSLINHEQGWVTL 252
+++ V P+ + FF AQ LI++ G AA ++G+ + SRSL+ ++G TL
Sbjct: 466 KSIDLVKPDVLPFFEKPAQELIDKHGALNAVAAALAFMTGYHQGVPSRSLLTSQEGQTTL 525
Query: 253 QLTRDSAFSRGFMSARSVMGFLSDVYPTAA-DEIGKIHIIADDRVQGAVFDLPE---EIA 308
L S V +S YP D++ + D G VFD+ E+
Sbjct: 526 LL----QLSYTIQHPGYVRNIISREYPELGYDDVKGWRMTEDS--MGVVFDIKSSRCEVK 579
Query: 309 KE----LLNKQIPPGN-TISKITKLPALQD 333
++ L+ + N T+S LP LQD
Sbjct: 580 EDGEVLLVGRPWTAHNITLSAPKSLPTLQD 609
>gi|340502033|gb|EGR28753.1| hypothetical protein IMG5_169500 [Ichthyophthirius multifiliis]
Length = 727
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/330 (35%), Positives = 174/330 (52%), Gaps = 14/330 (4%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGG--KTIVFTQTKRDADEVSLAL 71
V N D K ++G+ AI+ + + D+I Y G + I+F +TK +A+E+ L
Sbjct: 286 VRNNDNKTSQGVTHLAINCPFYQRTEAIGDVILCYGGGAHSRVIIFCETKNEANEIMLKA 345
Query: 72 TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 131
+ LHGDI Q QRE T GFR+GKF LVAT+VA+RGLDIP VDLI+ E P +
Sbjct: 346 NIKQDLQVLHGDIPQKQREITFQGFREGKFKCLVATNVASRGLDIPEVDLIVQLEPPKEL 405
Query: 132 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 191
+T++HR+GRTGRAGK G I FT Q + +E+ K + V P D++++S
Sbjct: 406 DTYIHRAGRTGRAGKTGVCITFFTKKQVGLIERIEKKCHIKMKIVGAPQPGDIVKASQTD 465
Query: 192 VVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWV 250
+ L V+ E V F ++ LI+E G +AL+ ALA +SG+ RSL+ +G+
Sbjct: 466 IKKNLKTVNQEVVSMFQQVSEDLIQEFGPQEALSRALAYISGYIEGVKQRSLLCCLEGYC 525
Query: 251 TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPE-EIAK 309
T + + RG + + D+ D + + AD GAVFD+ E +I K
Sbjct: 526 TY-IVKAPHEIRGLGYIWNWLKSNFDI--EVVDRVKGMKKCADSL--GAVFDVAESDIVK 580
Query: 310 -ELLNKQIPPGNT----ISKITKLPALQDD 334
E + I G + K T +P L+DD
Sbjct: 581 FEEYIQNIADGAKKGLLLEKATVMPKLEDD 610
>gi|7211427|gb|AAF40306.1|AF156667_1 RNA helicase [Vigna radiata]
Length = 713
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/324 (36%), Positives = 174/324 (53%), Gaps = 16/324 (4%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VGN K + ++ + +A ++ ++ D+I Y+ GG+TI+FT+TK A +++ L
Sbjct: 346 VGNTKMKASTNVRHIVLPCSAPARSQLIPDIIRCYSSGGRTIIFTETKESASQLAGLLP- 404
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ ALHGDI Q QRE TL GFR GKF LVAT+VAARGLDI +V LII E P + E+
Sbjct: 405 --GARALHGDIQQAQREVTLFGFRSGKFMTLVATNVAARGLDINDVQLIIQCEFPREVES 462
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG G A ++ +R + +ER+ G KFE +S P +D+ ++ +
Sbjct: 463 YIHRSGRTGRAGNTGVAGTLY-DPKRSNISKIERESGVKFEHISAPRPDDIAKAVGGEAA 521
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWV 250
+ V + F TA+ L++ G + LA ALA+ G++ RSL+ + +V
Sbjct: 522 EMITQVSDSVIPAFKETAEELLKSSGLTVVELLAKALAKAVGYTE-IKQRSLLTSMENYV 580
Query: 251 TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGK-IHIIADDRVQGAVFDLPEEIAK 309
TL L + + G L P E K + + AD GAVFD+P E
Sbjct: 581 TLLL----EIGKPIFTPSFAYGILRRFLPEEKVEAVKGLSLTADG--NGAVFDVPAEDLN 634
Query: 310 ELLNKQIPPGNTISKITK-LPALQ 332
L+ Q N ++ K LP LQ
Sbjct: 635 TYLSGQENAANVSLEVLKALPRLQ 658
>gi|405978792|gb|EKC43154.1| Nucleolar RNA helicase 2 [Crassostrea gigas]
Length = 671
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/259 (38%), Positives = 162/259 (62%), Gaps = 3/259 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
V +Q+ + + ++ AI ++ + +++ D++ VY+ K G+ I+F +TK++AD +S +
Sbjct: 345 VNSQENRTSTTVQHLAIRSSFWDRPSVIGDVLQVYSGKNGRAIIFNETKKEADNLSCSEY 404
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+ LHGDI Q +RE L FR+GKF VL+ TDVAARGLDIP VDL+I P D +
Sbjct: 405 IKQDAHVLHGDIPQEKRETVLKSFREGKFNVLLTTDVAARGLDIPEVDLVIQCNPPEDVD 464
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAGK G I + + + ++E KF+ VS P ED++ +S E
Sbjct: 465 SYIHRSGRTGRAGKNGVCICFYKPEEEMKLANVEYRAKIKFKKVSGPTKEDIISASVEDA 524
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
V ++ GV E++++F +A+ LI E+G DALAAALA +SG S +SRS+++ ++G+ T
Sbjct: 525 VRSIEGVQSETLDYFRSSAKELIAERGAEDALAAALALISG-STKITSRSMLSSKEGFTT 583
Query: 252 LQLTRDSAFSRGFMSARSV 270
L ++ R R++
Sbjct: 584 FYLKTNTEIQRNNYVYRAL 602
>gi|387018184|gb|AFJ51210.1| Nucleolar RNA helicase 2-like [Crotalus adamanteus]
Length = 701
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/232 (42%), Positives = 154/232 (66%), Gaps = 3/232 (1%)
Query: 25 IKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 83
++ AI + + ++ D+I VY+ G+TI+F +TK++A E++L + +++LHGD
Sbjct: 355 VEHLAIECHWSQRAAVIGDVIQVYSGSHGRTIIFCETKKEATELALNASIKQDAQSLHGD 414
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
I Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E+++HRSGRTGR
Sbjct: 415 IPQKQREVTLKGFRNGAFEVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGR 474
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 203
AG+ G I + + ++ +E+ G F+ V P D++++S++ + +L+ V P +
Sbjct: 475 AGRTGLCICFYQRREDYQLKQVEQKAGITFKRVGVPTATDIIKASSKDAIRSLDSVPPSA 534
Query: 204 VEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 254
+++F +A++LIEEKG +ALAAALA +SG + RSL+N + G+VT+ L
Sbjct: 535 IDYFRQSAEQLIEEKGAVEALAAALAHISG-ATSIEQRSLLNSDVGYVTMIL 585
>gi|124088759|ref|XP_001347224.1| Nucleolar RNA helicase II [Paramecium tetraurelia strain d4-2]
gi|50057613|emb|CAH03597.1| Nucleolar RNA helicase II, putative [Paramecium tetraurelia]
Length = 664
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 111/344 (32%), Positives = 178/344 (51%), Gaps = 17/344 (4%)
Query: 9 SHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEV 67
H + + + + +K YA+ + D+++VY + +TI+F +TKR+ +E+
Sbjct: 231 KHINLIKRHETQTSTTVKHYALQCARNQLSGAIGDVVSVYGGRHARTIIFCETKRECNEI 290
Query: 68 SLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 127
L ++ LHGDI Q QR T GF+ GKF LVAT+VAARGLD P VDLII
Sbjct: 291 ILHSKLPAETQPLHGDIPQQQRTVTFEGFKNGKFKCLVATNVAARGLDFPQVDLIIQCNP 350
Query: 128 PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 187
P D E+++HRSGRTGRAGK+G I ++ + +ER KF +S P +D++++
Sbjct: 351 PKDIESYIHRSGRTGRAGKDGVCITFYSKKDMGLIERVERVAKIKFIKISAPQHQDIIKA 410
Query: 188 SAEQVVATLNGVHPESVEFFTPTAQRLIEE-KGTDALAAALAQLSGFSRPPSSRSLINHE 246
S+ + +L V E V+ F P AQ +I +ALA ALA +SG+ +RS++
Sbjct: 411 SSRDLQTSLQVVSKEIVDMFQPVAQEIISRCDPVEALARALACVSGYKDKLQNRSMLGSF 470
Query: 247 QGWVTLQLTRDSAFSRGFMSARSVMGFLSDVY-PTAADEIGKIHIIADDRVQGAVFDLPE 305
+G++T L + F + + FL + + + I + I ++ G FD+ E
Sbjct: 471 EGYITYVLRSSTPFQ----ACGYIWKFLKNNFSEQICNSIKGMKKIRNE--NGVAFDISE 524
Query: 306 EIAKELLNKQ-------IPPGNTISKITKLP-ALQDDGPSSDNY 341
++ +E N+ G I + T LP +++ S NY
Sbjct: 525 DVKEEFENQYQEISQNGYCRGIEIEQATSLPDIIEEQFQSHQNY 568
>gi|334349455|ref|XP_001380649.2| PREDICTED: nucleolar RNA helicase 2-like [Monodelphis domestica]
Length = 887
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 154/237 (64%), Gaps = 3/237 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI+ + + ++ D+I VY+ G+TI+F +TK++A E+SL +
Sbjct: 553 IGKKTQKAAVTVEHLAINCHWSQRAAVIGDVIQVYSGSHGRTIIFCETKKEAQELSLNES 612
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR GKF VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 613 IKQDAQSLHGDIPQKQREITLQGFRNGKFGVLVATNVAARGLDIPEVDLVIQSSPPKDVE 672
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + ++ + +ER G F+ V P +++++S++
Sbjct: 673 SYIHRSGRTGRAGRTGICICFYQKKEQHQLAQVERQAGITFKRVGVPSASEIIKASSKDA 732
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQG 248
+ L+ V P ++ F TAQ+LI+EKG +ALAAALA +SG + RSLIN + G
Sbjct: 733 IRFLDSVPPAAINNFRQTAQKLIDEKGAVEALAAALAHISGATT-VEQRSLINSDVG 788
>gi|224136846|ref|XP_002322430.1| predicted protein [Populus trichocarpa]
gi|222869426|gb|EEF06557.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 115/325 (35%), Positives = 177/325 (54%), Gaps = 16/325 (4%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VGN+ K + ++ + + ++ ++ D+I YA GG+TI+FT+ + A+E+S L
Sbjct: 296 VGNEKMKASTNVRHIVLPCSTSAIPQVIPDIIRCYASGGRTIIFTEKRESANELSGLLP- 354
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ ALHG+I Q QRE TL+GFR GKF LVAT+VAARGLDI +V LII E PND E
Sbjct: 355 --GARALHGEIQQSQREVTLSGFRSGKFLTLVATNVAARGLDINDVQLIIQCEPPNDVEA 412
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG G A++++ +R + ++R+ G KFE ++ P ED+ ++ +
Sbjct: 413 YIHRSGRTGRAGNSGVAVMLY-DPRRSNISKIQRESGVKFEHITAPKAEDIAKAVGVEAA 471
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDA---LAAALAQLSGFSRPPSSRSLINHEQGWV 250
T+ V + F A+ L+ G A LA ALA+ +G++ SRSL++ + V
Sbjct: 472 ETIIQVSDSVIPAFKSAAEDLLNTSGLSAVELLAKALAKATGYTE-IKSRSLLSSMENHV 530
Query: 251 TLQLTRDSAFSRGFMSARSVMGFLSDVYPT-AADEIGKIHIIADDRVQGAVFDLPEEIAK 309
TL L + + L + P + + + + D GAVFD+ +E
Sbjct: 531 TLLLES----GKPIYTPSFAFSVLRRILPEDKVESVTGMTLTTDG--NGAVFDVKKEDVD 584
Query: 310 ELLNKQIP-PGNTISKITKLPALQD 333
L Q G I + LP+LQ+
Sbjct: 585 AFLAAQENGAGVNIEVVKTLPSLQE 609
>gi|344237686|gb|EGV93789.1| Nucleolar RNA helicase 2 [Cricetulus griseus]
Length = 729
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 155/243 (63%), Gaps = 3/243 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI + + ++ D+I VY+ G+TI+F +TKR+A E+S
Sbjct: 352 IGKKTQKAAITVEHLAIKCHWSERAAVIGDVIRVYSGHQGRTIIFCETKREAQELSQNTC 411
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E
Sbjct: 412 IKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVVQSCPPKDVE 471
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + +E+ G KF+ + P +++++S++
Sbjct: 472 SYIHRSGRTGRAGRTGVCICFYQHKDEYQLAQVEQKAGIKFKRIGVPSAAEIIKASSKDA 531
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P +++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT
Sbjct: 532 IRLLDSVPPTAIDHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSQAGFVT 590
Query: 252 LQL 254
+ L
Sbjct: 591 MIL 593
>gi|440895815|gb|ELR47909.1| Nucleolar RNA helicase 2, partial [Bos grunniens mutus]
Length = 680
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 156/243 (64%), Gaps = 3/243 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S +
Sbjct: 401 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFQGRTIIFCETKKEAQELSQNVA 460
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E
Sbjct: 461 VRQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVE 520
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 521 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSPTEIIKASSKDA 580
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN E G+VT
Sbjct: 581 IRLLDSVPPTAIGHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSEAGFVT 639
Query: 252 LQL 254
+ L
Sbjct: 640 MIL 642
>gi|344275097|ref|XP_003409350.1| PREDICTED: nucleolar RNA helicase 2 [Loxodonta africana]
Length = 787
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 173/290 (59%), Gaps = 17/290 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + T++ D+I VY+ G+TI+F +TK++A E+S +
Sbjct: 402 IGKKTQKTAITVEHLAIKCHWTHRATVIGDVIRVYSGYHGRTIIFCETKKEAQELSQNAS 461
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E
Sbjct: 462 IKQDAQSLHGDIPQKQREITLKGFRNGAFGVLVATNVAARGLDIPEVDLVVQSSPPKDVE 521
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 522 SYIHRSGRTGRAGRTGVCICFYQYKEEYQLAQVEQKAGIKFKRIGVPSATEIVKASSKDA 581
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ +F +A++LIEEKG +ALAAALA +SG + RSLI+ + G VT
Sbjct: 582 IRYLDSVPPTAISYFKQSAEKLIEEKGAVEALAAALAHISG-ATAVDQRSLISLDVGLVT 640
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVF 301
+ + M +S + +++G+ D +V+G VF
Sbjct: 641 M-----------ILKCSIEMSNISYAWKELKEQLGE---DIDSKVKGMVF 676
>gi|224122544|ref|XP_002318863.1| predicted protein [Populus trichocarpa]
gi|222859536|gb|EEE97083.1| predicted protein [Populus trichocarpa]
Length = 652
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 117/326 (35%), Positives = 180/326 (55%), Gaps = 18/326 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VGN+ K + ++ + + + ++ D+I+ Y GG+TI+FT+ + A+E++ L
Sbjct: 280 VGNEKMKASTNVRHIVLPCSTAAMPQVIPDVISCYGSGGRTIIFTEKRESANELAGLLP- 338
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ ALHG+I Q +RE TL+GFR GKF LVAT+VAARGLDI +V LII E PND E
Sbjct: 339 --GARALHGEIQQSKREVTLSGFRSGKFLTLVATNVAARGLDINDVQLIIQCEPPNDVEA 396
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG G A++++ +R + ++R+ G KFE ++ P ED+ +++
Sbjct: 397 YIHRSGRTGRAGNSGVAVMLY-DPRRSNISKIQRESGVKFEHITAPRAEDIAKAAGVGAA 455
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDA---LAAALAQLSGFSRPPSSRSLINHEQGWV 250
T+ V + F A+ L+ G A LA ALA+ +G++ SRSL+ V
Sbjct: 456 ETITQVSDSVIPAFKSAAENLLSTSGLSAVELLAKALAKATGYTE-IKSRSLLTSMDNHV 514
Query: 251 TLQL-TRDSAFSRGFMSARSVMGFLSDVYPT-AADEIGKIHIIADDRVQGAVFDLPEEIA 308
TL L + ++ F A SVM + P + + + + AD GAVFD+ +E
Sbjct: 515 TLLLESGKPIYTPSF--AFSVM---RRILPEDKVESVTGMSLTADG--NGAVFDVKKEDV 567
Query: 309 KELLNKQ-IPPGNTISKITKLPALQD 333
L Q G I + LP+LQ+
Sbjct: 568 DTFLAAQENAAGVNIEVVKALPSLQE 593
>gi|49119283|gb|AAH73332.1| LOC398189 protein [Xenopus laevis]
Length = 727
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 116/326 (35%), Positives = 178/326 (54%), Gaps = 14/326 (4%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G++ +K A ++ AI T + K +L DL+ VY+ GKTI+F +K +A ++ +
Sbjct: 361 IGHRSQKAATTVEHLAIECTRSQKAAVLGDLVQVYSGSHGKTIIFCDSKLEAHTLATSCG 420
Query: 73 SIIAS-EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 131
S+ S ++LHGD+ Q +RE L GFRQG F VL+AT+VAARGLDIP VDL++ Y P +
Sbjct: 421 SLKQSAKSLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEA 480
Query: 132 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 191
+ +VHRSGRTGRAG+ G I ++ +R +R++ER G F+ V P + +V +SS+
Sbjct: 481 DAYVHRSGRTGRAGRTGVCISLYEPWERHYLRNVERSTGITFKRVGVPSLLNVAKSSSAD 540
Query: 192 VVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L+ V + +E F AQ LIE+KG AA + RSL+N E G VT
Sbjct: 541 AIKSLDTVPADVIEHFKEYAQELIEQKGALTAIAAALAHISGATSIKQRSLLNMEAGCVT 600
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIH---IIADDRVQGAVFDLPEEIA 308
+ L + +S+ L D D KIH ++ D G FD+ E
Sbjct: 601 ITLKSSVPIHSLSYAWQSIKEQLGD------DVDSKIHRMCLLKDS--MGVCFDVRSENL 652
Query: 309 KELLNKQIPPGN-TISKITKLPALQD 333
+ + + + T+LPA+Q+
Sbjct: 653 ESMQERWTDTKQWQFTVATELPAIQE 678
>gi|449451928|ref|XP_004143712.1| PREDICTED: uncharacterized protein LOC101209696 [Cucumis sativus]
Length = 1247
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 114/324 (35%), Positives = 171/324 (52%), Gaps = 13/324 (4%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VGN+ K ++ ++ I + T + ++ D+I Y+ GG+TI+FT+TK A E++ L
Sbjct: 873 VGNEKMKASKDVRHIVIPCSDTERSRLIPDIIRCYSSGGRTIIFTETKESASELAGLLP- 931
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ LHGDI Q QR T++GFR GKF +LVAT+VAARGLDI +V LII E P D E
Sbjct: 932 --GARPLHGDIQQSQRSVTISGFRSGKFLILVATNVAARGLDINDVQLIIQCEAPKDIEA 989
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG G A+ ++ + + +ERD G KFE +S P D+ S+
Sbjct: 990 YIHRSGRTGRAGNTGVAVTLYDPRKSGRIARIERDSGVKFEHLSAPQPIDIARSAGASAA 1049
Query: 194 ATLNGVHPESVEFFTPTAQRLIEE---KGTDALAAALAQLSGFSRPPSSRSLINHEQGWV 250
++ V + F A+ ++ + LA ALA+LSG++ SRSL+ + +V
Sbjct: 1050 ESVTQVSDSVIPPFKSAAEEMVNSSTLSAVELLAKALAKLSGYTE-IKSRSLLTSMENYV 1108
Query: 251 TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKE 310
TL L + + FL + + + + + AD AVFD+ E
Sbjct: 1109 TLILEPGKPMYSPSFAYSILRRFLPE---EKVESVKGMSLTADG--SSAVFDVQTEDLDA 1163
Query: 311 LLNKQIPPGN-TISKITKLPALQD 333
L Q + +I + LP LQD
Sbjct: 1164 FLTGQANAADVSIEVLKSLPKLQD 1187
>gi|163916596|gb|AAI57756.1| LOC734085 protein [Xenopus (Silurana) tropicalis]
Length = 758
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 149/249 (59%), Gaps = 2/249 (0%)
Query: 8 FSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADE 66
F VG++ +K A ++ AI T + K +L D++ VY+ GK+I+F +K +A E
Sbjct: 387 FEKIDLVGHRSQKAAITVEHLAIECTRSQKAAVLGDIVQVYSGSHGKSIIFCDSKLEAHE 446
Query: 67 VSLALTSIIAS-EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
++ S+ S + LHGD+ Q +RE L GFRQG F VLVAT+VAARGLDIP VDL++ Y
Sbjct: 447 LATNCGSLKQSAKPLHGDLQQKEREVILKGFRQGSFEVLVATNVAARGLDIPEVDLVVLY 506
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 185
P + + +VHRSGRTGRAG+ G I ++ +R +R++ER G F+ V P + +V
Sbjct: 507 SAPKEADAYVHRSGRTGRAGRTGICISLYEPRERHYLRNVERSTGITFKRVGIPSLLNVA 566
Query: 186 ESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINH 245
+SS+ + +L+ V + +E F AQ LIE+KG AA + RSL+N
Sbjct: 567 KSSSADAIKSLDSVPADVIEHFKEYAQELIEKKGALTALAAALAHISGATSIKQRSLLNM 626
Query: 246 EQGWVTLQL 254
E G+VT+ L
Sbjct: 627 EAGYVTITL 635
>gi|224052119|ref|XP_002191015.1| PREDICTED: nucleolar RNA helicase 2-like [Taeniopygia guttata]
Length = 589
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 148/242 (61%), Gaps = 1/242 (0%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALT 72
+G + ++ A ++ AI ++ + +L D+I VY+ G+TIVF +TK++A+E+++ +
Sbjct: 236 IGKKAQRTATTVEHLAIQCRSSQRAGVLGDIIQVYSGSRGRTIVFCETKKEANELAMNAS 295
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VL+AT+VAARGLDIP VDL+I P D +
Sbjct: 296 LKQDAQSLHGDIPQKQREITLKGFRNGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDVD 355
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I +F + ++ +E G F+ V P DV+++S+
Sbjct: 356 SYIHRSGRTGRAGRTGICICLFQRREEDLLKQVEHKAGITFKRVGVPSATDVIKASSSDA 415
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 252
L V P +V++F +A+ LI+EKG A AA + RSL+N G+VT+
Sbjct: 416 KKLLEAVPPAAVDYFRKSAEELIDEKGAVAALAAALAHISGAAHIQQRSLLNSTAGFVTM 475
Query: 253 QL 254
L
Sbjct: 476 VL 477
>gi|113931550|ref|NP_001039224.1| nucleolar RNA helicase 2 [Xenopus (Silurana) tropicalis]
gi|89272468|emb|CAJ82454.1| novel GUCT (NUC152) domain containing DEAD/DEAH box helicase
[Xenopus (Silurana) tropicalis]
Length = 755
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 149/249 (59%), Gaps = 2/249 (0%)
Query: 8 FSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADE 66
F VG++ +K A ++ AI T + K +L D++ VY+ GK+I+F +K +A E
Sbjct: 387 FEKIDLVGHRSQKAAITVEHLAIECTRSQKAAVLGDIVQVYSGSHGKSIIFCDSKLEAHE 446
Query: 67 VSLALTSIIAS-EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
++ S+ S + LHGD+ Q +RE L GFRQG F VLVAT+VAARGLDIP VDL++ Y
Sbjct: 447 LATNCGSLKQSAKPLHGDLQQKEREVILKGFRQGSFEVLVATNVAARGLDIPEVDLVVLY 506
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 185
P + + +VHRSGRTGRAG+ G I ++ +R +R++ER G F+ V P + +V
Sbjct: 507 SAPKEADAYVHRSGRTGRAGRTGICISLYEPRERHYLRNVERSTGITFKRVGIPSLLNVA 566
Query: 186 ESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINH 245
+SS+ + +L+ V + +E F AQ LIE+KG AA + RSL+N
Sbjct: 567 KSSSADAIKSLDSVPADVIEHFKEYAQELIEKKGALTALAAALAHISGATSIKQRSLLNM 626
Query: 246 EQGWVTLQL 254
E G+VT+ L
Sbjct: 627 EAGYVTITL 635
>gi|80477520|gb|AAI08449.1| LOC398188 protein [Xenopus laevis]
Length = 768
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 118/340 (34%), Positives = 185/340 (54%), Gaps = 19/340 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG++ +K A ++ AI + K +L D++ VY+ GKTI+F +K A E+S
Sbjct: 403 VGHRSQKAAITVEHLAIECNRSQKAAVLGDIVQVYSGSHGKTIIFCDSKLQAHELSTNCG 462
Query: 73 SIIAS-EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 131
S+ S + LHGD+ Q +RE L GFRQG F VL+AT+VAARGLDIP VDL++ Y P +
Sbjct: 463 SLKQSAKPLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEA 522
Query: 132 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 191
+ +VHRSGRTGRAG+ G I ++ ++ +R++ER G F+ V P + +V +SS+
Sbjct: 523 DAYVHRSGRTGRAGRTGVCISLYEPWEKHYLRNVERSTGITFKRVGIPSLMNVAKSSSAD 582
Query: 192 VVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L+ V + +E F AQ LIE+KG AA + RSL+N E G++T
Sbjct: 583 AIKSLDTVPADVIEHFKEYAQELIEKKGALTALAAALAHISGATSIKQRSLLNMEAGYMT 642
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + RS+ L + +I ++ ++ D G FD+ E +L
Sbjct: 643 ITLKSSVPIHNLSYAWRSIKEQLGE---DVDSKIHRMCLLKDS--MGVCFDVRSE---DL 694
Query: 312 LNKQIPPGNT----ISKITKLPALQD-----DGPSSDNYG 342
+ Q +T + T+LP +Q+ DGP + ++G
Sbjct: 695 QSMQESWSDTRRWQFTITTELPEIQESERSFDGPRNRSFG 734
>gi|357444227|ref|XP_003592391.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355481439|gb|AES62642.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 641
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 112/323 (34%), Positives = 173/323 (53%), Gaps = 14/323 (4%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VGN K + ++ Y + T ++ ++ D+I Y+ G+TI+FT+TK A +++ L
Sbjct: 276 VGNTKMKASTSVRHYILPCTGAARSQLIPDIIRCYSSEGRTIIFTETKESASQLAELLP- 334
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ ALHGDI Q QRE TL+GFR GKF LVAT+VAARGLDI +V LII E P D E
Sbjct: 335 --GARALHGDIQQAQREVTLSGFRYGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEA 392
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG G A++++ +R + +ER+ G KFE +S P D+ ++ +
Sbjct: 393 YIHRSGRTGRAGNTGVAVMLY-DPRRSNIPKIERESGVKFEHISAPQANDIAKAVGREAA 451
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWV 250
+ V + F A+ L+ G D A ALA+ G++ RSL++ + +V
Sbjct: 452 EMIMQVSDSVIPAFKSAAEELLNNSGLSVVDLFAKALAKAVGYTE-IKKRSLLSSMENYV 510
Query: 251 TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDL-PEEIAK 309
TL L + + + + FL + + + + I AD G VFD+ E++
Sbjct: 511 TLLLENEKPIFTPTFAYKILRRFLPE---EKVEAVKGLTITADG--NGVVFDVAAEDLDT 565
Query: 310 ELLNKQIPPGNTISKITKLPALQ 332
L K+ + + +LP LQ
Sbjct: 566 YLAGKENVSDVRLEVLKELPRLQ 588
>gi|403257506|ref|XP_003921357.1| PREDICTED: nucleolar RNA helicase 2-like [Saimiri boliviensis
boliviensis]
Length = 648
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 132/402 (32%), Positives = 201/402 (50%), Gaps = 37/402 (9%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 265 IGKKTQKTAITVEHLAIKCHWTQRAEVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSA 324
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VA LDIP VDL+I P D E
Sbjct: 325 IKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAEHPLDIPEVDLVIQSSPPKDVE 384
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 385 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGIPSATEIIKASSKDA 444
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 252
+ L+ V P ++ F +A++LIEEKG AA + RSLIN G+VT+
Sbjct: 445 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAAPARISGATSVDQRSLINSNVGFVTM 504
Query: 253 QLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FDL 303
+ M +S + +++G+ D +V+G V FD+
Sbjct: 505 -----------ILRCSIEMPDISYAWKELKEQLGE---EIDSKVKGMVFLKGKLGVCFDV 550
Query: 304 PEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRG------GGS 356
P E+ K +S T+ P L +GP + YG F + SRG G
Sbjct: 551 PPASITEIQEKWHDSRRWQLSVATEQPEL--EGP-REGYGGFRGQREGSRGFRGQRDGNR 607
Query: 357 RFSRGGARGGARGG-GSMDRRGFRSSRSWGSDDEDGFSSSRG 397
RF G R G RG G G +S+RS + FS + G
Sbjct: 608 RFR--GQREGNRGPRGQRSGSGNKSNRSQDKGQKQSFSKAFG 647
>gi|148224339|ref|NP_001082033.1| nucleolar RNA helicase 2 [Xenopus laevis]
gi|10764780|gb|AAG22818.1|AF302422_1 RNA helicase II/Gu [Xenopus laevis]
Length = 800
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 118/340 (34%), Positives = 185/340 (54%), Gaps = 19/340 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG++ +K A ++ AI + K +L D++ VY+ GKTI+F +K A E+S
Sbjct: 435 VGHRSQKAAITVEHLAIECNRSQKAAVLGDIVQVYSGSHGKTIIFCDSKLQAHELSTNCG 494
Query: 73 SIIAS-EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 131
S+ S + LHGD+ Q +RE L GFRQG F VL+AT+VAARGLDIP VDL++ Y P +
Sbjct: 495 SLKQSAKPLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEA 554
Query: 132 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 191
+ +VHRSGRTGRAG+ G I ++ ++ +R++ER G F+ V P + +V +SS+
Sbjct: 555 DAYVHRSGRTGRAGRTGVCISLYEPWEKHYLRNVERSTGITFKRVGIPSLMNVAKSSSAD 614
Query: 192 VVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L+ V + +E F AQ LIE+KG AA + RSL+N E G++T
Sbjct: 615 AIKSLDTVPADVIEHFKEYAQELIEKKGALTALAAALAHISGATSIKQRSLLNMEAGYMT 674
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ L + RS+ L + +I ++ ++ D G FD+ E +L
Sbjct: 675 ITLKSSVPIHNLSYAWRSIKEQLGE---DVDSKIHRMCLLKDS--MGVCFDVRSE---DL 726
Query: 312 LNKQIPPGNT----ISKITKLPALQD-----DGPSSDNYG 342
+ Q +T + T+LP +Q+ DGP + ++G
Sbjct: 727 QSMQESWSDTRRWQFTITTELPEIQESERSFDGPRNRSFG 766
>gi|449530205|ref|XP_004172086.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Cucumis
sativus]
Length = 696
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 118/326 (36%), Positives = 176/326 (53%), Gaps = 17/326 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VGN+ K ++ ++ I + T + ++ D+I Y+ GG+TI+FT+TK A E++ L
Sbjct: 322 VGNEKMKASKDVRHIVIPCSDTERSRLIPDIIRCYSSGGRTIIFTETKESASELAGLLP- 380
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ LHGDI Q QR T++GFR GKF +LVAT+VAARGLDI +V LII E P D E
Sbjct: 381 --GARPLHGDIQQSQRSVTISGFRSGKFLILVATNVAARGLDINDVQLIIQCEAPKDIEA 438
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG G A+ ++ + + +ERD G KFE +S P D+ S+
Sbjct: 439 YIHRSGRTGRAGNTGVAVTLYDPRKSGRIARIERDSGVKFEHLSAPQPIDIARSAGASAA 498
Query: 194 ATLNGVHPESVEFFTPTAQRLIEE---KGTDALAAALAQLSGFSRPPSSRSLINHEQGWV 250
++ V + F A+ ++ + LA ALA+LSG++ SRSL+ + +V
Sbjct: 499 ESVTQVSDSVIPPFKSAAEEMVNSSTLSAVELLAKALAKLSGYTE-IKSRSLLTSMENYV 557
Query: 251 TLQLTR-DSAFSRGFMSARSVM-GFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIA 308
TL L +S F A S++ FL + + + + + AD AVFD+ E
Sbjct: 558 TLILEPGKPMYSPSF--AYSILRRFLPE---EKVESVKGMSLTADG--SSAVFDVQTEDL 610
Query: 309 KELLNKQIPPGN-TISKITKLPALQD 333
L Q + +I + LP LQD
Sbjct: 611 DAFLTGQANAADVSIEVLKSLPKLQD 636
>gi|403274099|ref|XP_003928826.1| PREDICTED: nucleolar RNA helicase 2 [Saimiri boliviensis
boliviensis]
Length = 840
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 112/290 (38%), Positives = 169/290 (58%), Gaps = 17/290 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G + +K A ++ AI T + ++ D+I VY G+TI+F +TK++A E+S
Sbjct: 478 IGKKTQKTAITVEHLAIKCHWTQRSGVIGDVIRVYGGHQGRTIIFCETKKEAQELSQNSA 537
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 538 IKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVE 597
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++
Sbjct: 598 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGIPSATEIIKASSKDA 657
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT
Sbjct: 658 IRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVT 716
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVF 301
+ L R + ++ +V +EI D +V+G VF
Sbjct: 717 MIL-------RCSIEMPNISYAWKEVKEQLGEEI-------DSKVKGMVF 752
>gi|412985798|emb|CCO16998.1| predicted protein [Bathycoccus prasinos]
Length = 689
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 115/306 (37%), Positives = 166/306 (54%), Gaps = 17/306 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALT 72
VGN+ +K + ++ + + +++ DLI A GG+ I+F TKRD E+ AL
Sbjct: 297 VGNEKQKASGQVQHLLLPCQWQERVSLIPDLIRAKAPTGGRCILFCDTKRDCTELCDALQ 356
Query: 73 SII--ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPND 130
S + ++ALHGDI+Q+ RE L GFR KF VLVATDVAARGLDI V+L+I E P D
Sbjct: 357 SSLEKGAKALHGDIAQNNREVVLQGFRDNKFQVLVATDVAARGLDISGVELVIQCEPPKD 416
Query: 131 PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE 190
PET++HRSGRTGRAG G + + T + ++ER G +F + PP ++ +++A+
Sbjct: 417 PETYIHRSGRTGRAGATGICVTLLTPRNEWAIPNIERKGGFRFVRIGPPQPAEMAKAAAK 476
Query: 191 QVVATLNGVHPESVEFFTPTAQRLIEE-----KGTDA---LAAALAQLSGFSRPPSSRSL 242
V + VH + + F A+ L+EE +G DA LA ALA G RSL
Sbjct: 477 IVCEKVRAVHKGAAKLFMQAARDLLEEGDDHDEGRDAVEVLAMALAHACGHGE-LRQRSL 535
Query: 243 INHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFD 302
+ G TL L SA + V FL P +I ++ + D+ AVFD
Sbjct: 536 LTSTAGSTTLIL---SAGGTEIRTPTYVWNFLKQRLPEDEVQINRLTLSQDNL--KAVFD 590
Query: 303 LPEEIA 308
+P ++A
Sbjct: 591 VPAKLA 596
>gi|387191793|gb|AFJ68623.1| hypothetical protein NGATSA_3007300, partial [Nannochloropsis
gaditana CCMP526]
Length = 800
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 179/316 (56%), Gaps = 23/316 (7%)
Query: 30 ISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASE---ALHGDISQ 86
+ + ++++ +L D+I ++ GG+ +VFTQTK +ADE L+ +S A+E LHGDI+Q
Sbjct: 412 VPDSYSARKNVLEDVIAAHSCGGRVMVFTQTKSEADE--LSTSSPYAAENTRVLHGDITQ 469
Query: 87 HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 146
QRE TL FR G F VL+ATDVAARG+DIP VDL+I Y +D +++VHRSGRTGRAG+
Sbjct: 470 RQRELTLRQFRDGFFKVLIATDVAARGIDIPEVDLVIQYRPCDDSDSYVHRSGRTGRAGR 529
Query: 147 EGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEF 206
EGT++++++ + +R LE D+ KF+ V P +EDV+ L V E V +
Sbjct: 530 EGTSVIIYSEPEWFKLRRLENDINIKFDKVGMPSIEDVVSGLCLAQTDKLKNVDAEVVPY 589
Query: 207 FTPTAQRLIEEKGTDA-----LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFS 261
F A L+ G+DA LA LA ++G + SRSL+ + G T+ D
Sbjct: 590 FKAYAAELV--AGSDAPVEEMLARCLAAMTG-RKLTVSRSLLTGQHGMTTVVAEAD---- 642
Query: 262 RGFMSARSVMGFLSDVYP-TAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNK---QIP 317
G + V+ F+ +Y T I ++ + +R AVFDL AK ++ K
Sbjct: 643 -GPLREWDVLDFVKGLYEGTDRLFIPEVKFLW-NRPNAAVFDLDTAKAKIVMAKFAEAEA 700
Query: 318 PGNTISKITKLPALQD 333
P ++S +P L++
Sbjct: 701 PVMSLSLCKDMPRLEN 716
>gi|149511217|ref|XP_001519340.1| PREDICTED: nucleolar RNA helicase 2 [Ornithorhynchus anatinus]
Length = 757
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/336 (33%), Positives = 180/336 (53%), Gaps = 19/336 (5%)
Query: 6 VMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDA 64
V + +G + +K A ++ AI + ++ +I VY+ G+TIVF +TK++A
Sbjct: 378 VKYEQVDLIGKKTQKTAMTVEHLAIKCHWAQRAAVIGTVIQVYSGTHGRTIVFCRTKKEA 437
Query: 65 DEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 124
E+SL+ +++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++
Sbjct: 438 TELSLSPAIKQDAQSLHGDIPQKQREITLKGFRSGAFGVLVATNVAARGLDIPEVDLVVQ 497
Query: 125 YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 184
P D E+++HRSGRTGRAG+ G + + + + + +E+ G F+ + P +V
Sbjct: 498 SSPPEDVESYIHRSGRTGRAGRTGICVCFYQAKEEYQLSQVEQKAGITFKRIGVPTTSEV 557
Query: 185 LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLIN 244
+++S++ V+ +L+ + ++ +F A+ LIEEKG AA + RSLIN
Sbjct: 558 VKASSKDVLRSLDSIPLHAINYFKQPARELIEEKGAVDALAAAIAVISGVTSVEQRSLIN 617
Query: 245 HEQGWVTLQL---TRDSAFSRGFMSARSVMGFLSDVYPTAADEI-GKI-HIIADDRVQGA 299
G+VT+ L S + S + +G +EI GK+ H+ G
Sbjct: 618 SAVGFVTMTLQCSVEMHTLSYAWRSLKEQLG----------EEIEGKVNHMCLLKGKMGV 667
Query: 300 VFDLPEEIAKELLNKQIPPGN--TISKITKLPALQD 333
FD+P+ EL+ Q +S T+LP L++
Sbjct: 668 CFDVPKATV-ELIQDQWKDTRRWQLSVATELPELEE 702
>gi|149038672|gb|EDL92961.1| rCG22084, isoform CRA_a [Rattus norvegicus]
gi|149038673|gb|EDL92962.1| rCG22084, isoform CRA_a [Rattus norvegicus]
Length = 398
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 150/237 (63%), Gaps = 3/237 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 57 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 116
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 117 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 176
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G + + +R +R +E+ G F+ V P D+++S +
Sbjct: 177 SYIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 236
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQG 248
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G
Sbjct: 237 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGASS-FEPRSLITSDKG 292
>gi|148700136|gb|EDL32083.1| mCG141508, isoform CRA_b [Mus musculus]
Length = 398
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 150/237 (63%), Gaps = 3/237 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 57 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 116
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 117 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 176
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G + + +R +R +E+ G F+ V P D+++S +
Sbjct: 177 SYIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 236
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQG 248
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G
Sbjct: 237 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGASS-FEPRSLITSDKG 292
>gi|148700135|gb|EDL32082.1| mCG141508, isoform CRA_a [Mus musculus]
Length = 624
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 150/237 (63%), Gaps = 3/237 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 283 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 342
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 343 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 402
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G + + +R +R +E+ G F+ V P D+++S +
Sbjct: 403 SYIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 462
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQG 248
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G
Sbjct: 463 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKG 518
>gi|15241726|ref|NP_201025.1| DEAD-box ATP-dependent RNA helicase 7 [Arabidopsis thaliana]
gi|108861902|sp|Q39189.2|RH7_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 7
gi|8809632|dbj|BAA97183.1| RNA helicase [Arabidopsis thaliana]
gi|15810145|gb|AAL07216.1| putative RNA helicase [Arabidopsis thaliana]
gi|30793911|gb|AAP40408.1| putative DEAD/DEAH box RNA helicase PRH75 [Arabidopsis thaliana]
gi|332010196|gb|AED97579.1| DEAD-box ATP-dependent RNA helicase 7 [Arabidopsis thaliana]
Length = 671
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 120/329 (36%), Positives = 177/329 (53%), Gaps = 17/329 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VGN K + ++ AI + ++ D+I+ Y+ GG+TI+F +TK E+S L
Sbjct: 313 VGNDKMKASNSVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLD- 371
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
S ALHG+I Q QRE TL GFR GKF LVAT+VAARGLDI +V LII E P + E
Sbjct: 372 --GSRALHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEA 429
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG G A+ ++ S++ +V +E++ G KFE ++ P +++ S +
Sbjct: 430 YIHRSGRTGRAGNTGVAVTLY-DSRKSSVSRIEKEAGIKFEHLAAPQPDEIARSGGMEAA 488
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDA---LAAALAQLSGFSRPPSSRSLINHEQGWV 250
+ V V F A+ L+E G A LA ALA+ +GF+ RSL+ + +V
Sbjct: 489 EKVKQVCDSVVPAFLEAAKELLETSGLSAEVLLAKALAKTAGFTE-IKKRSLLTSMENYV 547
Query: 251 TLQLTRDSAFSRGFMSARSVMGFLSDVYP-TAADEIGKIHIIADDRVQGAVFDLPE-EIA 308
TL L + S V G L V P + I + + AD GAVFD+ + ++
Sbjct: 548 TLHLEA----GKPIYSPSFVYGLLRRVLPDDKVEMIEGLSLTADK--TGAVFDVKQSDLD 601
Query: 309 KELLNKQIPPGNTISKITK-LPALQDDGP 336
+ Q G+ ++ K +P LQ+ P
Sbjct: 602 LFIAGAQKSAGSMSLEVVKVMPKLQEREP 630
>gi|149038674|gb|EDL92963.1| rCG22084, isoform CRA_b [Rattus norvegicus]
Length = 689
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 150/237 (63%), Gaps = 3/237 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 348 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 407
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 408 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 467
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G + + +R +R +E+ G F+ V P D+++S +
Sbjct: 468 SYIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 527
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQG 248
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G
Sbjct: 528 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKG 583
>gi|148700137|gb|EDL32084.1| mCG141508, isoform CRA_c [Mus musculus]
Length = 689
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 150/237 (63%), Gaps = 3/237 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 348 VGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPH 407
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E
Sbjct: 408 IKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVE 467
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG+ G + + +R +R +E+ G F+ V P D+++S +
Sbjct: 468 SYIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDA 527
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQG 248
+ +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G
Sbjct: 528 IRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKG 583
>gi|14517482|gb|AAK62631.1| AT5g62190/mmi9_10 [Arabidopsis thaliana]
Length = 671
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 120/329 (36%), Positives = 177/329 (53%), Gaps = 17/329 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VGN K + ++ AI + ++ D+I+ Y+ GG+TI+F +TK E+S L
Sbjct: 313 VGNDKMKASNSVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLD- 371
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
S ALHG+I Q QRE TL GFR GKF LVAT+VAARGLDI +V LII E P + E
Sbjct: 372 --GSRALHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEA 429
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG G A+ ++ S++ +V +E++ G KFE ++ P +++ S +
Sbjct: 430 YIHRSGRTGRAGNTGVAVTLY-DSRKSSVSRIEKEAGIKFEHLAAPQPDEIARSGGMEAA 488
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDA---LAAALAQLSGFSRPPSSRSLINHEQGWV 250
+ V V F A+ L+E G A LA ALA+ +GF+ RSL+ + +V
Sbjct: 489 EKVKQVCDSVVPAFLEAAKELLETSGLSAEVLLAKALAKTAGFTE-IKKRSLLTSMENYV 547
Query: 251 TLQLTRDSAFSRGFMSARSVMGFLSDVYP-TAADEIGKIHIIADDRVQGAVFDLPE-EIA 308
TL L + S V G L V P + I + + AD GAVFD+ + ++
Sbjct: 548 TLHLEA----GKPIYSPSFVYGLLRRVLPDDKVEMIEGLSLTADK--TGAVFDVKQSDLD 601
Query: 309 KELLNKQIPPGNTISKITK-LPALQDDGP 336
+ Q G+ ++ K +P LQ+ P
Sbjct: 602 LFIAGAQKSAGSMSLEVVKVMPKLQEREP 630
>gi|320164192|gb|EFW41091.1| nucleolar RNA helicase 2 [Capsaspora owczarzaki ATCC 30864]
Length = 793
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 134/355 (37%), Positives = 188/355 (52%), Gaps = 22/355 (6%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
V D++ + I+ AI + + D++ VY+ G+ +VF TK +A++ LAL
Sbjct: 406 VSGTDQQTSTTIQHLAIRCPWQERANAIGDVVRVYSGSHGRCMVFASTKEEAND--LALN 463
Query: 73 SIIASE--ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPND 130
IA E LHGDI+Q QRE TL GFR GKF LVATDVAARGLDIP V+L+I E P D
Sbjct: 464 GRIAGETHVLHGDIAQKQREITLAGFRSGKFRCLVATDVAARGLDIPEVELVIQTEPPID 523
Query: 131 PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE 190
ET++HR+GRTGRAGK GT IL + Q VR +E F+ + PP +D++ +SA
Sbjct: 524 VETYIHRAGRTGRAGKSGTCILFYKPQQESLVRRIEGKARMAFKRIGPPQPQDIVSASAN 583
Query: 191 QVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGW 249
+L V P F A+ +I G DAL+AALA +SG +RSL++ +G+
Sbjct: 584 DAARSLAKVSPAVYPLFHQAAEEVIARAGAVDALSAALAVISGVFEI-KTRSLLSSMEGY 642
Query: 250 VT--LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEI 307
VT +QLT D RG S++ + P + + + D GA FD P ++
Sbjct: 643 VTFCIQLTYDV---RGPSFFWSIID--RHLPPNVRPALRGMRLFKDH--TGAAFDCPSDV 695
Query: 308 AKELLNKQI-PPGNTISKITKLPALQDDGPSSDNYGRFSS-RDRFSRGGGSRFSR 360
+ + P I T LP L + +D G SS R + G +RFS+
Sbjct: 696 VDTIKEHWVDQPTTKIYVATTLPDLVE----TDGGGNASSFAGRGNAGAAARFSQ 746
>gi|147899364|ref|NP_001082035.1| RNA helicase II/Gu [Xenopus laevis]
gi|16975508|gb|AAG22819.2|AF302423_1 RNA helicase II/Gu [Xenopus laevis]
Length = 759
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 115/326 (35%), Positives = 177/326 (54%), Gaps = 14/326 (4%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
+G++ +K A ++ AI T + K +L DL+ VY+ GKTI+F +K +A ++ +
Sbjct: 393 IGHRSQKAATTVEHLAIECTRSQKAAVLGDLVQVYSGSHGKTIIFCDSKLEAHTLATSCG 452
Query: 73 SIIAS-EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 131
S+ S ++LHGD+ Q +RE L GFRQG F VL+AT+VAARGLDIP VDL++ Y P +
Sbjct: 453 SLKQSAKSLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEA 512
Query: 132 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 191
+ +VHRSGRTGRAG+ G I ++ +R +R++ER G F+ V P + +V +SS+
Sbjct: 513 DAYVHRSGRTGRAGRTGVCISLYEPWERHYLRNVERSTGITFKRVGVPSLLNVAKSSSAD 572
Query: 192 VVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+ +L+ V + +E F AQ LIE+KG AA + RSL+N E G T
Sbjct: 573 AIKSLDTVPADVIEHFKEYAQELIEQKGALTAIAAALAHISGATSIKQRSLLNMEAGCDT 632
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIH---IIADDRVQGAVFDLPEEIA 308
+ L + +S+ L D D KIH ++ D G FD+ E
Sbjct: 633 ITLKSSVPIHSLSYAWQSIKEQLGD------DVDSKIHRMCLLKDS--MGVCFDVRSENL 684
Query: 309 KELLNKQIPPGN-TISKITKLPALQD 333
+ + + + T+LPA+Q+
Sbjct: 685 ESMQERWTDTKQWQFTVATELPAIQE 710
>gi|145544585|ref|XP_001457977.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425796|emb|CAK90580.1| unnamed protein product [Paramecium tetraurelia]
Length = 647
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 143/255 (56%), Gaps = 2/255 (0%)
Query: 9 SHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEV 67
H + + + + +K YA+ + D+++VY + +TI+F +TKR+ +E+
Sbjct: 231 KHINLIKRHETQTSTTVKHYALQCAKNQLTGAIGDVVSVYGGRHARTIIFCETKRECNEI 290
Query: 68 SLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 127
L ++ LHGDI Q QR T GF+ GKF LVAT+VAARGLD P VDLII
Sbjct: 291 ILHSKLPAETQPLHGDIPQQQRTVTFEGFKNGKFKCLVATNVAARGLDFPQVDLIIQCNP 350
Query: 128 PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 187
P D E+++HRSGRTGRAGK+G I ++ + +ER KF +S P +D++++
Sbjct: 351 PKDIESYIHRSGRTGRAGKDGICITFYSKKDMSLIERVERVAKIKFIKISAPQHQDIIKA 410
Query: 188 SAEQVVATLNGVHPESVEFFTPTAQRLIEE-KGTDALAAALAQLSGFSRPPSSRSLINHE 246
S+ + +L V E V+ F P AQ ++ +ALA ALA +SG+ +RS++
Sbjct: 411 SSRDLQTSLQVVSKEIVDLFQPVAQEILSRCDPVEALARALACVSGYKDKLQNRSMLGSF 470
Query: 247 QGWVTLQLTRDSAFS 261
+G++T L + F
Sbjct: 471 EGYITYVLRSSTPFQ 485
>gi|1488521|emb|CAA68194.1| RNA helicase [Arabidopsis thaliana]
Length = 671
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 176/329 (53%), Gaps = 17/329 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VGN K + ++ AI + ++ D+I+ Y+ GG+TI+F +TK E+S L
Sbjct: 313 VGNDKMKASNSVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLD- 371
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
S ALHG+I Q QRE TL GFR GKF LVAT+VAARGLDI +V LII E P + E
Sbjct: 372 --GSRALHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEA 429
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG G + ++ S++ +V +E++ G KFE ++ P +++ S +
Sbjct: 430 YIHRSGRTGRAGNTGVPVTLY-DSRKSSVSRIEKEAGIKFEHLAAPQPDEIARSGGMEAA 488
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDA---LAAALAQLSGFSRPPSSRSLINHEQGWV 250
+ V V F A+ L+E G A LA ALA+ +GF+ RSL+ + +V
Sbjct: 489 EKVKQVCDSVVPAFLEAAKELLETSGLSAEVLLAKALAKTAGFTE-IKKRSLLTSMENYV 547
Query: 251 TLQLTRDSAFSRGFMSARSVMGFLSDVYP-TAADEIGKIHIIADDRVQGAVFDLPE-EIA 308
TL L + S V G L V P + I + + AD GAVFD+ + ++
Sbjct: 548 TLHLEA----GKPIYSPSFVYGLLRRVLPDDKVEMIEGLSLTADK--TGAVFDVKQSDLD 601
Query: 309 KELLNKQIPPGNTISKITK-LPALQDDGP 336
+ Q G+ ++ K +P LQ+ P
Sbjct: 602 LFIAGAQKSAGSMSLEVVKVMPKLQEREP 630
>gi|407954645|dbj|BAM48570.1| malignant cell derived RNA helicase [Homo sapiens]
Length = 731
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 121/337 (35%), Positives = 187/337 (55%), Gaps = 15/337 (4%)
Query: 8 FSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADE 66
+ VG +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E
Sbjct: 345 YEQVALVGKMTQKAATPVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTE 404
Query: 67 VSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE 126
+++ ++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLD P VDL+I
Sbjct: 405 MAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDNPEVDLVIQSS 464
Query: 127 LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 186
P D E+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++
Sbjct: 465 PPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVK 524
Query: 187 SSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINH 245
S + + +L SV + +AQRLIEEKG DALAAALA +SG S RSLI
Sbjct: 525 SKSMDAIRSL-----ASVSYAAVSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITS 578
Query: 246 EQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPE 305
++G+VT+ L + MSA + + A +I ++ ++ + G FD+P
Sbjct: 579 DKGFVTMTL---ESLEEYRMSAVAWKELNRKLSSNAVSQITRMCLLKG--IWGVCFDVPT 633
Query: 306 EIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 340
++ L + +S KLP +++ DG +S N
Sbjct: 634 TESERLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 670
>gi|384247126|gb|EIE20614.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 698
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 162/303 (53%), Gaps = 8/303 (2%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG K + +K + + + T+ +DL+ Y G+TI+F TK+D +E+ +L
Sbjct: 319 VGTDKMKASTSVKHMVLPCHWSQRATVAADLVRCYGALGRTIIFCDTKKDCNELVASLGE 378
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ ++ LHGDI Q QRE TL FR KF +LVATDVAARGLDI V+L+I E P DPET
Sbjct: 379 GMRAQPLHGDIPQQQREVTLKAFRAAKFDILVATDVAARGLDINGVELVIQIEPPKDPET 438
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRA G ++ + + + + + G FE + P ++ + E+
Sbjct: 439 YIHRSGRTGRASSTGVSVTLVDRKKEGLIPFIAKRAGVTFERIGAPQPSEMARIAGERAS 498
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKG--TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 251
+L V V +F A +L+E G +ALA ALA+++GFS +RSL+ + + T
Sbjct: 499 ESLVEVDKTVVPWFRAAAAQLLETVGDPEEALAMALAKVTGFSS-IRARSLLTAHEDYTT 557
Query: 252 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
LQ R S+ LSD ++I I + D + A+FD+P IA+
Sbjct: 558 LQFHAGQEIQRPGFVFTSLRRHLSD---EVVEQIKGITLTTDGK--SAIFDVPSGIAQPY 612
Query: 312 LNK 314
L +
Sbjct: 613 LTQ 615
>gi|297624335|ref|YP_003705769.1| DEAD/DEAH box helicase [Truepera radiovictrix DSM 17093]
gi|297165515|gb|ADI15226.1| DEAD/DEAH box helicase domain protein [Truepera radiovictrix DSM
17093]
Length = 526
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/228 (44%), Positives = 141/228 (61%), Gaps = 4/228 (1%)
Query: 29 AISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQH 87
AI S+ +LSD++ V+ G +IVFT+TK + DE++ ALTS+ +EA+HGD++Q
Sbjct: 216 AIEAPLASRLGVLSDVLHVHGTGA-SIVFTRTKAEVDELAKALTSLGHLAEAVHGDLNQV 274
Query: 88 QRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE 147
QRER L FR + TVLVATDVAARGLDIP VDL++HY P PE + HRSGRTGRAG+
Sbjct: 275 QRERVLERFRASQVTVLVATDVAARGLDIPEVDLVVHYRFPEQPERYQHRSGRTGRAGRA 334
Query: 148 GTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFF 207
GT +L+++ +RR + LER + + E P +DV + + L + +
Sbjct: 335 GTVVLLYSPRERRELALLERAIARRIERAGAPRPQDVQRAKLAGLQRNLAAQRDDDRSAW 394
Query: 208 TPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 255
AQ I+ K DALA LA G + P+ RSL+ E+GW TL+LT
Sbjct: 395 RAVAQAWIDAKDVDALAGLLALTLGGA--PAPRSLLTGEEGWTTLKLT 440
>gi|422294259|gb|EKU21559.1| dead deah box rna [Nannochloropsis gaditana CCMP526]
Length = 737
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 116/331 (35%), Positives = 179/331 (54%), Gaps = 21/331 (6%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLAL 71
V +D K + ++ AI +S + ++D + VY + +TIVF +TK++ +E L +
Sbjct: 355 VQGEDAKASTDVRHVAIPCHWSSMPSTVADCLAVYGGSNKARTIVFCETKKECNE--LVV 412
Query: 72 TSIIASE--ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP- 128
+I +E ALHGDI Q QRE TL FR+G+ VLVATDVAARGLD+ VDL++ + P
Sbjct: 413 NPVIKTECAALHGDIPQAQRETTLKAFREGRVRVLVATDVAARGLDM-TVDLVVQNKPPV 471
Query: 129 -----NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED 183
D ET+VHRSGRTGRAG++G + +F+ R V+ +E VG KFE+ P D
Sbjct: 472 TASGRTDVETYVHRSGRTGRAGRKGICVTLFSPKYRFAVKEIEGAVGNKFEWAGAPQPAD 531
Query: 184 VLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ-LSGFSRPPSSRSL 242
++ +SA + + V + F A +L+EE G + AA L+G ++ SRSL
Sbjct: 532 IVAASALAAMEDVANVDDKVFPLFQAAAAKLVEEMGAEEALAAALACLTGHTKELRSRSL 591
Query: 243 INHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE-IGKIHIIADDRVQGAVF 301
+++ +VT Q D + MS V L + P E I + + AD+ GAVF
Sbjct: 592 LSNSDDYVTCQFQAD----QPIMSTGYVWTALRNALPQEVTEDIRGMQLTADN--TGAVF 645
Query: 302 DLPEEIAKELLNKQIPPGNTISKITKLPALQ 332
D+P + K + + + ++ LP ++
Sbjct: 646 DVPSKYMKTSMKRAVEENPFLTVCKTLPEIK 676
>gi|298712936|emb|CBJ26838.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 694
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/296 (37%), Positives = 170/296 (57%), Gaps = 15/296 (5%)
Query: 20 KLAEGIKLYAISTTATSKRTILSDLITVYAKGG--KTIVFTQTKRDADEVSLALTSIIAS 77
K ++ ++ I TS+ + ++D+++VY GG +TIVF TKRD +E+ +
Sbjct: 367 KASKDVEHIGIPCHWTSRSSTINDIVSVYGAGGNKRTIVFCTTKRDCNELCMDPKMTYDC 426
Query: 78 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN------DP 131
+ALHGDI+Q RE TL GF++G F VLVATDVAARGLD+ VDL+++ E P D
Sbjct: 427 QALHGDITQANRESTLAGFKKGSFKVLVATDVAARGLDM-IVDLVLNAEPPTHQSGRVDT 485
Query: 132 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 191
E++VHRSGRTGRAG++G I ++T QR + +ER +G F + P +D++ +SA
Sbjct: 486 ESYVHRSGRTGRAGRKGMCITLYTPRQRGGLGEIERHIGNDFAWRGAPQPDDIVNASAGA 545
Query: 192 VVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWV 250
+ + V ++ + A++LI+EKG +AL AALA ++G + RSL+++ +G V
Sbjct: 546 AIDDIRAVDDSVIDLYKTAAEQLIDEKGALNALCAALACMTGRTEAMPVRSLLSNSEGHV 605
Query: 251 TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEE 306
T+ D ++ LS AAD I + + D VFD+PEE
Sbjct: 606 TIIFRSDHPIEYMAYCWTAIRKVLSS---AAADNIRGMQLSEDG--LACVFDVPEE 656
>gi|313679216|ref|YP_004056955.1| ATP-dependent RNA helicase dbpa [Oceanithermus profundus DSM 14977]
gi|313151931|gb|ADR35782.1| ATP-dependent RNA helicase DbpA [Oceanithermus profundus DSM 14977]
Length = 528
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 146/239 (61%), Gaps = 6/239 (2%)
Query: 17 QDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-I 75
QDE+++ + AI + +++ + LSDL+ + + IVFT+TK++ADEV+ ALT+
Sbjct: 215 QDEEVS--YREIAIEASPSARMSALSDLLHAHGPE-RAIVFTRTKKEADEVARALTARGH 271
Query: 76 ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 135
A+EA+HGD++Q QRER++ FR G+ VLVATDVAARGLDIP VDL++H LP E++
Sbjct: 272 AAEAVHGDLNQTQRERSVGRFRSGQVGVLVATDVAARGLDIPEVDLVVHLRLPERAESYQ 331
Query: 136 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT 195
HRSGRTGRAG+ GT I+ +S +RR + LER VG KFE P E+V ++ ++
Sbjct: 332 HRSGRTGRAGRSGTVIIFHSSRERRELGQLERAVGRKFEHGRAPAPEEVQQAKIAGLLRR 391
Query: 196 LNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 254
E + AQ IE + D + A P RSL+ ++GW TL+L
Sbjct: 392 AAAQSEEDRAVWREVAQAWIERE--DVESLAGLLAMLLGGAPKPRSLLTGDEGWRTLEL 448
>gi|414590005|tpg|DAA40576.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 704
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 171/327 (52%), Gaps = 19/327 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VGN+ K + +K A+ ++ ++ D+I Y+ GG+TI+FT+TK A E+S
Sbjct: 340 VGNEKLKASASVKHLALPCNKAARAQLIPDIIRCYSHGGRTIIFTETKDSASELS---GL 396
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
I S ALHGD+ Q QRE L GFR GKF VLVAT+VAARGLDI +V LII E P D E
Sbjct: 397 IPGSRALHGDVVQAQREVILAGFRSGKFQVLVATNVAARGLDINDVQLIIQCEPPRDVEA 456
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG G A++++ + +V LER+ G KFE +S P DV +S+ +
Sbjct: 457 YIHRSGRTGRAGNTGVAVMLYEPRYKYSVSRLERESGVKFEHISAPQPTDVAQSAGSEAA 516
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS---GFSRPPSSRSLINHEQGWV 250
+ V + F A++L+ A L+ G++ RSL++ + +
Sbjct: 517 DAIASVSDSVIPVFRQQAEQLLSSSTLSAADLLAKALAKAVGYTD-IKKRSLLSSMEDYA 575
Query: 251 TLQL-TRDSAFSRGFMSARSVMGFLSDVYP--TAADEIGKIHIIADDRVQGAVFDLPEEI 307
TL L T +S GF L P AD G + AD G VFD+P
Sbjct: 576 TLHLQTGRQMWSPGF-----AFTILKRFMPEEKLADVKGAT-LTADG--TGVVFDVPAAD 627
Query: 308 AKELLNKQIPPGN-TISKITKLPALQD 333
++ + TI ++ +LP LQ+
Sbjct: 628 VEDYIQASENAAQVTIDEVQQLPPLQE 654
>gi|414590004|tpg|DAA40575.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 671
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 171/327 (52%), Gaps = 19/327 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VGN+ K + +K A+ ++ ++ D+I Y+ GG+TI+FT+TK A E+S
Sbjct: 340 VGNEKLKASASVKHLALPCNKAARAQLIPDIIRCYSHGGRTIIFTETKDSASELS---GL 396
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
I S ALHGD+ Q QRE L GFR GKF VLVAT+VAARGLDI +V LII E P D E
Sbjct: 397 IPGSRALHGDVVQAQREVILAGFRSGKFQVLVATNVAARGLDINDVQLIIQCEPPRDVEA 456
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG G A++++ + +V LER+ G KFE +S P DV +S+ +
Sbjct: 457 YIHRSGRTGRAGNTGVAVMLYEPRYKYSVSRLERESGVKFEHISAPQPTDVAQSAGSEAA 516
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS---GFSRPPSSRSLINHEQGWV 250
+ V + F A++L+ A L+ G++ RSL++ + +
Sbjct: 517 DAIASVSDSVIPVFRQQAEQLLSSSTLSAADLLAKALAKAVGYTD-IKKRSLLSSMEDYA 575
Query: 251 TLQL-TRDSAFSRGFMSARSVMGFLSDVYP--TAADEIGKIHIIADDRVQGAVFDLPEEI 307
TL L T +S GF L P AD G + AD G VFD+P
Sbjct: 576 TLHLQTGRQMWSPGF-----AFTILKRFMPEEKLADVKGAT-LTADG--TGVVFDVPAAD 627
Query: 308 AKELLNKQIPPGN-TISKITKLPALQD 333
++ + TI ++ +LP LQ+
Sbjct: 628 VEDYIQASENAAQVTIDEVQQLPPLQE 654
>gi|414886328|tpg|DAA62342.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 707
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 119/335 (35%), Positives = 175/335 (52%), Gaps = 21/335 (6%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VGN+ K + +K A+ ++ ++ D+I Y+ GG+TI+FT+TK A E+S
Sbjct: 338 VGNEKLKASASVKHLALPCNKAARAQVIPDIIRCYSHGGRTIIFTETKDSASELS---GL 394
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
I S ALHGD++Q QRE L GFR GKF VLVAT+VAARGLDI +V LII E P D E
Sbjct: 395 IHGSRALHGDVAQAQREVILAGFRSGKFQVLVATNVAARGLDINDVQLIIQCEPPRDVEA 454
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG G A++++ + +V LER+ G KFE +S P DV +S+ +
Sbjct: 455 YIHRSGRTGRAGNTGVAVMLYEPRYKHSVSRLERESGVKFEHISAPQPTDVAQSAGSEAA 514
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS---GFSRPPSSRSLINHEQGWV 250
+ V + F A++L+ A L+ G++ RSL++ + +
Sbjct: 515 DAIASVSDSVIPIFRQQAEQLLSSSSLSAADLLAKALAKAVGYTD-IKKRSLLSSLEDYS 573
Query: 251 TLQL-TRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIH---IIADDRVQGAVFDLPEE 306
TL L T +S GF L P D++ + + AD G VFD+P
Sbjct: 574 TLHLQTGRPMWSPGF-----AFTILKRFMPE--DKLADVKGATLTADG--TGVVFDVPAA 624
Query: 307 IAKELLNKQIPPGN-TISKITKLPALQDDGPSSDN 340
++ + TI ++ +LP LQ+ S N
Sbjct: 625 DVEDYIQASESAAQVTIDEVKQLPPLQEKDQSRGN 659
>gi|397573970|gb|EJK48957.1| hypothetical protein THAOC_32204 [Thalassiosira oceanica]
Length = 900
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 113/290 (38%), Positives = 166/290 (57%), Gaps = 18/290 (6%)
Query: 52 GKTIVFTQTKRDADE-VSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 110
GKTIVFT+TK + D+ VS ++ + ++ +HGDI Q QR+ TL FR G F VLVATDVA
Sbjct: 517 GKTIVFTETKAECDQLVSGSVFKTLTAQTIHGDIGQKQRDATLAAFRAGSFNVLVATDVA 576
Query: 111 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV- 169
ARG+DI +VDL+I + P D +T+VHRSGRTGRAG +G ++++F +Q R + +ER +
Sbjct: 577 ARGIDIKDVDLVIQFHPPRDTDTYVHRSGRTGRAGAKGISVVLFQQNQARDIVRMERSLG 636
Query: 170 -GCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIE-EKGTDALAAAL 227
G KFE + PP E L ++A+ V E+ E F A L+ + D +A L
Sbjct: 637 HGFKFELLGPPSTEAALIAAAKTSAIACKSVADETAEHFREAAGILLATDDAEDVVARCL 696
Query: 228 AQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGF-MSARSVMGFLSDVYPTAADEIG 286
A +S + SRSL+ E G+ T+++T SRG +S VM +S + + E G
Sbjct: 697 AAISRRAVQVESRSLLTGEAGFSTVEMTN----SRGRPVSPGDVMFTVSKLSRMSQKEGG 752
Query: 287 KIHI------IADDRVQG-AVFDLPEEIAKELL--NKQIPPGNTISKITK 327
+ I +R G AVFD+ E AK+L+ + +I G + + K
Sbjct: 753 DLSFDGDVGKIQTNRETGNAVFDMGVEDAKKLVEFSAEIEAGGAVFSLMK 802
>gi|260830758|ref|XP_002610327.1| hypothetical protein BRAFLDRAFT_144535 [Branchiostoma floridae]
gi|229295692|gb|EEN66337.1| hypothetical protein BRAFLDRAFT_144535 [Branchiostoma floridae]
Length = 655
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 149/251 (59%), Gaps = 5/251 (1%)
Query: 10 HSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVS 68
H +G + + A ++ AI ++ +++D+IT+Y+ + G+ +VF +TK++A++
Sbjct: 301 HVDMIGTEQNRSATTVEHLAIRCGWQARAPVIADIITMYSGQHGRAMVFCETKKEANQ-- 358
Query: 69 LALTSIIASEA--LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE 126
L L ++ EA LHGDI Q QRE TL FR G VLVATDVAARGLDIP VDL++ E
Sbjct: 359 LVLEGVLKQEAQVLHGDIPQAQRELTLKSFRDGNIQVLVATDVAARGLDIPEVDLVVQCE 418
Query: 127 LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 186
P+D ++++HRSGRTGRAG+ G + + ++ + +R +ER G KF ++ P +D+++
Sbjct: 419 PPSDVDSYIHRSGRTGRAGRTGVCVCFYKPNREQDLRFVERRAGIKFRQINAPQPDDIVK 478
Query: 187 SSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHE 246
++A + V + + F A++LI EKG AA + S RSL+N +
Sbjct: 479 AAANDSARAIEEVPDKMLTHFQEAAEKLIAEKGAVNAVAAALAVMSGSSEIKKRSLLNAD 538
Query: 247 QGWVTLQLTRD 257
+G+ T+ D
Sbjct: 539 EGFTTMLFHTD 549
>gi|146197863|dbj|BAF57642.1| nucleolar RNA helicase II/Gu protein [Dugesia japonica]
Length = 627
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 117/373 (31%), Positives = 195/373 (52%), Gaps = 35/373 (9%)
Query: 20 KLAEGIKLYAISTTATSKRTILSDLITVYAKG--GKTIVFTQTKRDADEVSLALTSIIAS 77
K A ++ AI + + D+I V+ G + I+F + K+DADE LA S + S
Sbjct: 267 KAASTVEHLAIQCPWRERAGTIPDIIRVHGGGNQARCIIFCERKKDADE--LASHSAMKS 324
Query: 78 EA--LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 135
+ LHGD+ Q +RE L FR+GK++VLV T+VAARGLD+P++DL+I P D E ++
Sbjct: 325 DCHVLHGDVPQEKRELVLKKFREGKYSVLVTTNVAARGLDVPDIDLVIQCHPPKDVEDYI 384
Query: 136 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT 195
HRSGRTGRAG++G I + ++ ++ +E+ G F+ + PP ++E++ +
Sbjct: 385 HRSGRTGRAGRKGVCICFYEPKEKYDLQKVEKLAGFTFKRIFPPSAASIIEANLNDTIEA 444
Query: 196 LNGVHPESV-EFFTPTAQRLIEEKGTD-ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
+ PE+V E F +A +LIE+ G + A+A ALA++SG +RSL++ +G+ T
Sbjct: 445 FKSI-PETVCESFKESAIKLIEQFGAEKAMALALAKISGKVEELKNRSLLSSMEGFTTYM 503
Query: 254 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
LT + + ++ ++S +++ + + + VFDL E + +
Sbjct: 504 LTTNDEIKFKGYAYSALKKYIS---TEIVEQVKSLQFVKGRK--SLVFDLASEHDESIST 558
Query: 314 KQIPPG-NTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGS 372
+ N ++K+++LP ++ R GG F GG G R GG
Sbjct: 559 NWVDSNFNKLTKLSELPEIEKSE---------------ERNGG--FRNGGQ--GRRPGGF 599
Query: 373 MDRRGFRSSRSWG 385
DR+ F RS+G
Sbjct: 600 NDRK-FGMKRSFG 611
>gi|221057271|ref|XP_002259773.1| ATP-dependent helicase [Plasmodium knowlesi strain H]
gi|193809845|emb|CAQ40549.1| ATP-dependent helicase, putative [Plasmodium knowlesi strain H]
Length = 722
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 118/333 (35%), Positives = 175/333 (52%), Gaps = 38/333 (11%)
Query: 14 VGNQDEKLAEGIKLYAISTT--ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL 71
V + K ++ IK AI T K +L D+I V + GG+ I+FT+TK +AD
Sbjct: 362 VVDSSNKTSKNIKHIAIKTPYDIKEKALLLEDIILVKSNGGQVIIFTRTKLEAD------ 415
Query: 72 TSIIASE---------ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 122
I+ SE LHG+I+Q RE T+ FRQG F +L+ATD+AARGLDI NVDL+
Sbjct: 416 --ILCSEGSFKSLSFAVLHGNIAQTTREHTMQRFRQGMFQILIATDIAARGLDISNVDLV 473
Query: 123 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 182
I PN E ++HR+GRTGRA K+G ++++F+S ++ + +E++ G KF P E
Sbjct: 474 IQCFPPNYAEIYIHRAGRTGRANKKGVSVVLFSSEDKQDLIKIEKNCGIKFSIEQLPNNE 533
Query: 183 DVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEE------KGTDALAAALAQLSGFSRP 236
DV S++ + V+P + FF TA LIE+ T+ +A LA +S
Sbjct: 534 DVFTSASTMASKKIENVNPSVLPFFHKTASELIEKCTQLQMDQTELVARCLALISK-KEQ 592
Query: 237 PSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFL----SDVYPTAADEIGKIHIIA 292
RSLIN +TL SR + + ++ ++ +D+ ++I +I I
Sbjct: 593 IKKRSLINGLSETLTLSFINK---SRKWKNEDDIIYWVNRISNDLNVNTFNKILQIKIDT 649
Query: 293 DDRVQGAVFDLPEEIAKELLNKQIPPGNTISKI 325
DR + FDL E IA EL I N +SK+
Sbjct: 650 KDRF-SSYFDLNENIA-ELF---IQNFNNMSKV 677
>gi|297565173|ref|YP_003684145.1| DEAD/DEAH box helicase [Meiothermus silvanus DSM 9946]
gi|296849622|gb|ADH62637.1| DEAD/DEAH box helicase domain protein [Meiothermus silvanus DSM
9946]
Length = 538
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 143/228 (62%), Gaps = 6/228 (2%)
Query: 29 AISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQH 87
A+ ++ L+D+I YA +TIVFT+TK + DE++ L + I + +HGD+SQ
Sbjct: 226 ALQAPLQTRLNTLTDVIFAYAPE-RTIVFTRTKAEVDELATGLQARGIGAAPIHGDMSQR 284
Query: 88 QRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE 147
+RER L FR+G TVLVATDVAARGLDIP VDL++H+ LP E + HRSGRTGRAG+
Sbjct: 285 ERERVLGRFREGTDTVLVATDVAARGLDIPEVDLVVHFRLPEKAEPYQHRSGRTGRAGRS 344
Query: 148 GTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFF 207
G IL + +RR + +LE V +F+ V+PP E+V E+ ++++A L P +
Sbjct: 345 GRVILFYGPRERRELENLEYAVKRRFKRVNPPTPEEVQEAKWQRLLARLAKQPPHERAPW 404
Query: 208 TPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 255
A RL+ ++ +A+A LA + G P +SLI E+G VT++L+
Sbjct: 405 RELADRLVNDR--EAIAGLLAFMLGTVSAP--KSLITGEEGLVTVKLS 448
>gi|218295270|ref|ZP_03496106.1| DEAD/DEAH box helicase domain protein [Thermus aquaticus Y51MC23]
gi|218244473|gb|EED10998.1| DEAD/DEAH box helicase domain protein [Thermus aquaticus Y51MC23]
Length = 513
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 113/277 (40%), Positives = 167/277 (60%), Gaps = 19/277 (6%)
Query: 35 TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTL 93
T + +LSDL+ V A + IVFT+TK + +EV+ L + A+ A+HGD+SQ RER +
Sbjct: 222 TDRLALLSDLLYVKAPK-RAIVFTKTKAETEEVATGLLRLGHAARAIHGDLSQADRERVM 280
Query: 94 NGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 153
FR+G+ VLVATDVAARGLDIP VDL++HY LP+ PET+ HRSGRTGRAG+ G +++
Sbjct: 281 RAFREGEVRVLVATDVAARGLDIPEVDLVVHYRLPDKPETYQHRSGRTGRAGRGGEVVIL 340
Query: 154 FTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQR 213
+ ++R + LER VG F+ V+PP E+VLE+ + ++A L V + + + A R
Sbjct: 341 YGPREKRELAELERAVGRPFKRVNPPTPEEVLEAKWQHLLARLARVPEKDYKLYLDFAGR 400
Query: 214 LIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGF 273
L E + +AA +A + G + P RSL+ E+GW+TL+ T AR +
Sbjct: 401 LFAEGRVEVVAALMALILGGA--PKERSLLTGEEGWITLKAT----------GARLTLPR 448
Query: 274 LSDVYPTAADEIGKIHIIADDRVQGAVFDL-PEEIAK 309
L + E+GKI + +G DL P+++AK
Sbjct: 449 LVALLKERGLEVGKIA----EAEEGFYLDLRPQDLAK 481
>gi|452824703|gb|EME31704.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 758
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/317 (34%), Positives = 171/317 (53%), Gaps = 26/317 (8%)
Query: 14 VGNQDEKLAEGIKLYAIST--TATSKRTILSDLITVYA---KGGKTIVFTQTKRDADEVS 68
+GN+D K + ++ A+ T S++ IL +I+VY+ + IVF +TK + D S
Sbjct: 404 IGNKDTKTSTTVEHIALRVPPTELSRKLILESVISVYSAEMTNFRCIVFARTKAEVD--S 461
Query: 69 LALTSII---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
L + I A++ALHGDI+Q QRE TL+ FR+G F VL+ATDVAARGLDI VDL+I Y
Sbjct: 462 LVSSGRIHNGAAQALHGDITQKQREITLSKFREGSFQVLIATDVAARGLDINGVDLVIQY 521
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 185
+P D + ++HR+GRTGRAG++GT I+++T +R + +E +F SPP ++ V+
Sbjct: 522 RVPEDIDMYIHRAGRTGRAGRQGTCIILYTDEERNKLTLMENVCKIRFRLESPPSIQQVI 581
Query: 186 ESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD----------ALAAALAQLSGFSR 235
E+ A + V + VE P + IE + LA+ LA G
Sbjct: 582 ETKANGFLRASQAVEGKWVEPLIPVVKEYIESLHIEGEEREKQFPFVLASLLAVAMGQLN 641
Query: 236 PPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDR 295
P S+++ E+ + + + + ++ R V L D +G + I AD +
Sbjct: 642 MPQV-SILSGEENMCPILVKSKTVLTVSYI-VRIVSRLLED--KGFESRVGLVSICADTK 697
Query: 296 VQGAVFDLPEEIAKELL 312
+ AVFDL +IA+ +
Sbjct: 698 M--AVFDLKNDIAERFV 712
>gi|156094360|ref|XP_001613217.1| ATP-dependent helicase [Plasmodium vivax Sal-1]
gi|148802091|gb|EDL43490.1| ATP-dependent helicase, putative [Plasmodium vivax]
Length = 720
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 175/333 (52%), Gaps = 38/333 (11%)
Query: 14 VGNQDEKLAEGIKLYAISTT--ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL 71
V + K ++ IK AI T K +L D+I V + GG+ I+FT+TK +AD
Sbjct: 360 VVDSSNKTSKNIKHIAIKTPYDIKEKALLLEDIILVKSNGGQVIIFTRTKLEAD------ 413
Query: 72 TSIIASE---------ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 122
I+ SE LHG+I+Q RE T+ FRQG F +L+ATD+AARGLDI NVDL+
Sbjct: 414 --ILCSEGSFKSLSFAVLHGNIAQTTREHTMQRFRQGMFQILIATDIAARGLDISNVDLV 471
Query: 123 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 182
I PN E ++HR+GRTGRA K+G ++++F++ ++ + +E++ G KF P E
Sbjct: 472 IQCFPPNYAEIYIHRAGRTGRANKKGISVVLFSTEDKQDLVKIEKNCGIKFSIEQLPNNE 531
Query: 183 DVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEE------KGTDALAAALAQLSGFSRP 236
DV S++ + V+P + FF TA LIE+ T+ +A LA +S
Sbjct: 532 DVFTSASTMASKKIQNVNPSVLPFFHKTASELIEKCTQLQMDQTELVARCLAIISK-KEH 590
Query: 237 PSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFL----SDVYPTAADEIGKIHIIA 292
RSLIN +TL SR + + ++ ++ +D+ ++I +I I
Sbjct: 591 IKKRSLINGLSETLTLSFVNK---SRKWKNEDDIIYWVNKISNDLNVNTFNKILQIKIDT 647
Query: 293 DDRVQGAVFDLPEEIAKELLNKQIPPGNTISKI 325
DR + FDL E IA EL I N +SK+
Sbjct: 648 RDRF-SSYFDLNENIA-ELF---IQNFNNMSKV 675
>gi|198419625|ref|XP_002130533.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
[Ciona intestinalis]
Length = 672
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/335 (33%), Positives = 183/335 (54%), Gaps = 22/335 (6%)
Query: 10 HSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADE-- 66
H +G + A ++ AI + + + +++ +Y+ + G+ ++FT TK+DA+E
Sbjct: 300 HVDTIGKSLVRTATTVEHLAIRCQYSDRAECIGNVVQMYSGQHGRAMIFTDTKKDANELV 359
Query: 67 VSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE 126
V AL A + LHGDI Q QRE TL +R G LVAT+VAARGLDIP +DL+I
Sbjct: 360 VCEALQQQKA-QVLHGDIEQRQREITLKAYRDGTVRCLVATNVAARGLDIPEIDLVIQTS 418
Query: 127 LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 186
P+D ++++HRSGRTGRAG+ G + + + ++ +ER G KF+ V PP +D+++
Sbjct: 419 PPSDIDSYIHRSGRTGRAGRTGVCVCFYKPREDMMIKKVERVAGIKFKMVGPPQPKDIVK 478
Query: 187 SSAEQVVATLNGVHPESVEFFTPTAQRLIEEK---GTDALAAALAQLSGFSRPPSSRSLI 243
+S +A+L+ V + F A+++ +ALA+ALA ++G S SRSL+
Sbjct: 479 ASVNDAIASLDLVDKKITAEFMKHAEQVASNHAGGAMEALASALAYMAGASD-LKSRSLL 537
Query: 244 NHEQGWVT--LQLTRDSAFSRGFM--SARSVMGFLSDVYPTAADEIGKIHIIADDRVQGA 299
N + + T LQ + F+ GF+ + ++G D+I + + AD GA
Sbjct: 538 NAQADFTTWHLQTQYEIRFA-GFVFSTMEQILG------KHIRDKIVGMRLTADKL--GA 588
Query: 300 VFDLPEEIAKEL-LNKQIPPGNTISKITKLPALQD 333
VFDLP E +E+ + + P T+ LP L +
Sbjct: 589 VFDLPNECTEEIDQSWEDSPTLTLKPCDDLPELTE 623
>gi|242045340|ref|XP_002460541.1| hypothetical protein SORBIDRAFT_02g030210 [Sorghum bicolor]
gi|241923918|gb|EER97062.1| hypothetical protein SORBIDRAFT_02g030210 [Sorghum bicolor]
Length = 711
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 172/327 (52%), Gaps = 19/327 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VGN+ K + +K A+ ++ ++ D+I Y+ GG+TI+FT+TK A E+S
Sbjct: 339 VGNEKLKASASVKHLALPCNKAARAQVIPDIIRCYSHGGRTIIFTETKDSASELS---GL 395
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
I S ALHGD+ Q QRE L GFR GKF VLVAT+VAARGLDI +V LII E P D E
Sbjct: 396 IPGSRALHGDVVQAQREVILAGFRGGKFQVLVATNVAARGLDINDVQLIIQCEPPRDVEA 455
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG G A++++ + +V LER+ G KFE +S P DV +S+ +
Sbjct: 456 YIHRSGRTGRAGNTGVAVMLYEPRYKYSVNRLERESGVKFEHISAPQPTDVAQSAGSEAA 515
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS---GFSRPPSSRSLINHEQGWV 250
++ V + F A++L+ A L+ G++ RSL++ + +
Sbjct: 516 DAISSVSDSVIPVFRQQAEQLLSSSSLSAADLLAKALAKAVGYTD-IKKRSLLSSMEDYT 574
Query: 251 TLQL-TRDSAFSRGFMSARSVMGFLSDVYP--TAADEIGKIHIIADDRVQGAVFDLPEEI 307
TL L T +S GF L P AD G + AD G VFD+P
Sbjct: 575 TLHLQTGRPMWSPGF-----AFTILKRFMPEEKLADVKGAT-LTADG--TGVVFDVPAAD 626
Query: 308 AKELLNKQIPPGN-TISKITKLPALQD 333
++ + TI ++ +LP LQ+
Sbjct: 627 VEDYIQASENAAQVTIDEVKQLPPLQE 653
>gi|302846090|ref|XP_002954582.1| hypothetical protein VOLCADRAFT_82854 [Volvox carteri f.
nagariensis]
gi|300260001|gb|EFJ44223.1| hypothetical protein VOLCADRAFT_82854 [Volvox carteri f.
nagariensis]
Length = 424
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/184 (47%), Positives = 118/184 (64%), Gaps = 4/184 (2%)
Query: 20 KLAEGIKLYAISTTATSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSIIA 76
KLA+ I+L K + L L+ +Y A GGK I+F TK ADEV++A+ +
Sbjct: 208 KLADTIRLLVQQVDGAQKMSALQGLLAMYGNTAGGGKAIIFVNTKAKADEVNMAVNEFAS 267
Query: 77 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 136
+ALHGDISQ QRE+ L FR GK+ LVATDVAARGLDIP+VDL+ H++LP D E F+H
Sbjct: 268 CDALHGDISQAQREKALALFRDGKYNCLVATDVAARGLDIPSVDLVAHFDLPQDNEAFLH 327
Query: 137 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC-KFEFVSPPVVEDVLESSAEQVVAT 195
RSGRTGRAGK GTA+++FT + R++ + R E V P DV+ +++ V+
Sbjct: 328 RSGRTGRAGKTGTAVVLFTEREARSLALILRATKVTNAELVGAPDPGDVMRTASRSVLGK 387
Query: 196 LNGV 199
L+ V
Sbjct: 388 LDKV 391
>gi|414886327|tpg|DAA62341.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 317
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 122/200 (61%), Gaps = 3/200 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VGN+ K + +K A+ ++ ++ D+I Y+ GG+TI+FT+TK A E+S
Sbjct: 14 VGNEKLKASASVKHLALPCNKAARAQVIPDIIRCYSHGGRTIIFTETKDSASELS---GL 70
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
I S ALHGD++Q QRE L GFR GKF VLVAT+VAARGLDI +V LII E P D E
Sbjct: 71 IHGSRALHGDVAQAQREVILAGFRSGKFQVLVATNVAARGLDINDVQLIIQCEPPRDVEA 130
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG G A++++ + +V LER+ G KFE +S P DV +S+ +
Sbjct: 131 YIHRSGRTGRAGNTGVAVMLYEPRYKHSVSRLERESGVKFEHISAPQPTDVAQSAGSEAA 190
Query: 194 ATLNGVHPESVEFFTPTAQR 213
+ V + F A++
Sbjct: 191 DAIASVSDSVIPIFRQQAEQ 210
>gi|308802996|ref|XP_003078811.1| putative RNA helicase (ISS) [Ostreococcus tauri]
gi|116057264|emb|CAL51691.1| putative RNA helicase (ISS) [Ostreococcus tauri]
Length = 693
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 116/341 (34%), Positives = 179/341 (52%), Gaps = 23/341 (6%)
Query: 8 FSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGG-KTIVFTQTKRDADE 66
+S VG++ +K + ++ + + + ++ D+I A GG + IVF TKRD E
Sbjct: 290 YSTVDLVGDEKQKASGAVQHMLLPCQWSDRVDLVCDVIRSKAPGGGRVIVFCDTKRDCGE 349
Query: 67 VSLALTSII--ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 124
+ L I ++ALHGD+SQ QRE L+ FR+ KF VLVATDVAARGLDI V+L+I
Sbjct: 350 LCDNLQKEIPKGAKALHGDVSQSQREVVLSLFREDKFQVLVATDVAARGLDITGVELVIQ 409
Query: 125 YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 184
E P D ET++HRSGRTGRAG G ++ + T V ++ER G KF + PP ++
Sbjct: 410 CEPPKDAETYIHRSGRTGRAGATGISVTLCTPRNEWAVPNIERKGGFKFIRIGPPQPAEM 469
Query: 185 LESSAEQVVATLNGVHPESVEFFTPTAQRLIE------EKGTD---ALAAALAQLSGFSR 235
+++ + + VH + + F A+ L+E E+G D LA A+A+L+G
Sbjct: 470 AKAAGKIAGEQIRKVHKGAAKLFMDVARDLLEGEDSDSEEGRDPVEVLAMAIAKLAGHGE 529
Query: 236 PPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDR 295
RSL+ G TL T + R + V FL + ++ ++ + D++
Sbjct: 530 -LRQRSLLTSHSGQTTLLFTANGVDIR---TPTYVWNFLRQRMDESELQLRRLTLSMDNK 585
Query: 296 VQGAVFDLPEEIAKELLNKQIPPGN-----TISKITKLPAL 331
AVFD+P E+A + + P + TI + +LP L
Sbjct: 586 --AAVFDVPSELADKFVALSEPATSGKTAVTIIECAELPEL 624
>gi|443708232|gb|ELU03439.1| hypothetical protein CAPTEDRAFT_52524, partial [Capitella teleta]
Length = 707
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/323 (32%), Positives = 175/323 (54%), Gaps = 9/323 (2%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT 72
VG + + + ++ A+ + + D++ VY+ G+ +VF +TKRDAD+++++
Sbjct: 332 VGRERVRTSITVQHLALQCNYQDRAATVGDVLRVYSGSQGRAMVFCETKRDADDLAVSPC 391
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
I + LHGDI Q +R+ L FR+G++ L+ TDVAARGLDIP VDL++ P D +
Sbjct: 392 IGIETHVLHGDIPQEKRQLVLQKFREGRYKCLITTDVAARGLDIPEVDLVVQCCPPKDVD 451
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+++HRSGRTGRAG++GT +L + V+ +ER G KF V P ++++++A
Sbjct: 452 SYIHRSGRTGRAGRQGTCVLFYKYGSEYEVQRVERTAGFKFRRVGAPSRNEIIDAAARDA 511
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 252
L V E++ F +A+ LIEEKG AA + + SRSL+ ++G+ T
Sbjct: 512 RLVLATVPEETLGHFRESAKLLIEEKGGVDAVAAALAVITGNTEMKSRSLLTSKEGFTTY 571
Query: 253 QLTRDSAF-SRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
T + S G+ + S++ D++ + D G VFDLP ++ +
Sbjct: 572 VFTSTNEIKSMGYFWSAMERQLPSEI----KDKVRAPRMQKDQ--MGCVFDLPSDVDALV 625
Query: 312 LNK-QIPPGNTISKITKLPALQD 333
N Q +T++ T+LP ++D
Sbjct: 626 ENYWQDSEYHTLNVATELPEMED 648
>gi|145345534|ref|XP_001417262.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577489|gb|ABO95555.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 654
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 116/335 (34%), Positives = 173/335 (51%), Gaps = 23/335 (6%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGG-KTIVFTQTKRDADEVSLALT 72
VG+Q +K + ++ + + + ++ D+I A GG + IVF TKRD E+ L
Sbjct: 298 VGDQKQKASGAVQHMLLPCQWSDRVDLVCDVIRSKAPGGGRVIVFCDTKRDCGELCDNLQ 357
Query: 73 SII--ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPND 130
I ++ALHGD+SQ QRE L GFR+ KF VLVATDVAARGLDI V+L+I E P D
Sbjct: 358 KEIPKGAKALHGDVSQGQREVVLAGFREDKFQVLVATDVAARGLDITGVELVIQCEPPKD 417
Query: 131 PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE 190
ET++HRSGRTGRAG G ++ + T V ++ER G KF + PP ++ +++ +
Sbjct: 418 AETYIHRSGRTGRAGATGISVTLCTPRSEWAVPNIERKGGFKFVRIGPPQPAEMAKAAGK 477
Query: 191 QVVATLNGVHPESVEFFTPTAQRLIE------EKGTD---ALAAALAQLSGFSRPPSSRS 241
+ VH + + F A+ L+E E+G D LA A+A+L+G RS
Sbjct: 478 IAGEQIRKVHKGAAKLFMDVARDLLEGEDSDSEEGRDPVEVLAMAIAKLAGHGE-LRQRS 536
Query: 242 LINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVF 301
L+ G TL T A + V FL ++ ++ + D+ AVF
Sbjct: 537 LLTSHSGQTTLLFT---AGETQIRTPTYVWNFLRQRMDENDLQLRRLTLSVDN--MAAVF 591
Query: 302 DLPEEIAKELLNKQIPPGN-----TISKITKLPAL 331
D+P E+A + P + +I+ +LP L
Sbjct: 592 DVPSELADKFCALSEPASSGKSAVSITACEELPEL 626
>gi|159478160|ref|XP_001697172.1| hypothetical protein CHLREDRAFT_119793 [Chlamydomonas reinhardtii]
gi|158274646|gb|EDP00427.1| predicted protein [Chlamydomonas reinhardtii]
Length = 384
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 104/146 (71%), Gaps = 3/146 (2%)
Query: 20 KLAEGIKLYAISTTATSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSIIA 76
+LA+ I+L K + L ++++Y A GGK I+F TK ADEV+LA+
Sbjct: 239 RLADTIRLLVQQVEGAQKMSALQGVLSMYGNTAGGGKAIIFVNTKAKADEVNLAVNEFAP 298
Query: 77 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 136
+ALHGDISQ QRE+ L+ FR+GK+ LVATDVAARGLDIPNVDL++HY++P D E F+H
Sbjct: 299 CDALHGDISQAQREKALSLFREGKYAALVATDVAARGLDIPNVDLVVHYDVPQDNEAFLH 358
Query: 137 RSGRTGRAGKEGTAILMFTSSQRRTV 162
RSGRTGRAGK GTA+++FT + R +
Sbjct: 359 RSGRTGRAGKTGTAVVLFTDRESRAL 384
>gi|325188903|emb|CCA23433.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 684
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 126/403 (31%), Positives = 196/403 (48%), Gaps = 41/403 (10%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+++ + + AI+ + + L ++ YA G+++VFT+TK +A+E++ L
Sbjct: 286 VGSEEAHVPTTVSHKAINVPSNYRVVALQRILEKYASQGQSLVFTETKHEANEIANGLEG 345
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ALHGD+SQ R T+ FR+G L TD+AARGLDI NVDL++HY LPND E
Sbjct: 346 CNV-QALHGDLSQGVRASTMQNFRKGLVKTLACTDIAARGLDIANVDLVVHYRLPNDREN 404
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
FVHR+GRTGRAGK GT+I+ F + + R ++ LE +F + P +D ++ ++V
Sbjct: 405 FVHRAGRTGRAGKTGTSIVFFENQEYRDIKDLENRFKIQFAHAATPDADDFRDTKVKEVT 464
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPS-SRSLINHEQGWVTL 252
L V +S +F + A +L E G +AAL L GF + + S S++ + +T+
Sbjct: 465 KRLQKVSDKSSDFLSEEATKLYEAHGIRIFSAALNLLCGFEKGNTLSVSMLTGKSNMLTV 524
Query: 253 QLTRDSAFSRGFMSARSVMGFL-SDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
Q+ G S V L S + +A +I ++ + + D+P +L
Sbjct: 525 QID-------GLTSVSQVSELLQSAIGNSAQRDIMSVN-------KKFIVDIPYSSYAQL 570
Query: 312 ---LNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGAR 368
L G T+S++T+LP + + GS S GG R G
Sbjct: 571 QEALQSNNVDGVTVSRVTELPHI-------------------TLPLGSERSFGGGRYG-- 609
Query: 369 GGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRF 411
S G + G S R R SG++R SRF
Sbjct: 610 DNSSGYGGGRYGGGNSGYGGGGRGSKDRNFRRNDSGDSRNSRF 652
>gi|145347049|ref|XP_001417991.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578219|gb|ABO96284.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 346
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/127 (60%), Positives = 96/127 (75%)
Query: 53 KTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
K I FTQTKR ADE++ AL +ASE LHGDI+Q QRERTL FR +F+VL+ATDVAAR
Sbjct: 211 KAICFTQTKRAADELTAALGRRVASEVLHGDIAQAQRERTLQRFRDNRFSVLIATDVAAR 270
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLDI +VDL+IHYELPND E+FVHR GRTGRAG+ G AI M T + +R ++++ GC+
Sbjct: 271 GLDISDVDLVIHYELPNDVESFVHRCGRTGRAGQLGAAIAMHTDRESYMIRRIKKETGCE 330
Query: 173 FEFVSPP 179
F + P
Sbjct: 331 FRTIGIP 337
>gi|255539651|ref|XP_002510890.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223550005|gb|EEF51492.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 690
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 115/325 (35%), Positives = 173/325 (53%), Gaps = 16/325 (4%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VGN+ K + ++ + +A++ ++ D+I Y+ GG+TI+FT+ + A+E++ L
Sbjct: 322 VGNEKMKASTNVRHIILPCSASAIPQVIPDIIRCYSSGGRTIIFTEKRESANELAGLLH- 380
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ ALHG+I Q QRE TL+GFR GKF LVAT+VAARGLDI +V LII E P D E
Sbjct: 381 --GARALHGEIQQSQREVTLSGFRSGKFLTLVATNVAARGLDINDVQLIIQCEPPRDVEA 438
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
++HRSGRTGRAG G A++++ +R + +ER+ G KFE ++ P D+ ++
Sbjct: 439 YIHRSGRTGRAGNTGVAVMLY-DPRRSNISKIERESGVKFEHITAPQPADIAQAVGAVAA 497
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDAL---AAALAQLSGFSRPPSSRSLINHEQGWV 250
+ V V F A+ L+ G A+ A ALA +G++ SRSL++ + V
Sbjct: 498 EKITQVSDSIVPAFKSAAEDLLNSSGLSAVELLAKALANAAGYTE-IKSRSLLSSMENHV 556
Query: 251 TLQLTRDSAFSRGFMSARSVMGFLSDVYPT-AADEIGKIHIIADDRVQGAVFDLPEEIAK 309
TL L R + G L P + + + + AD + GAVFD+
Sbjct: 557 TLLLEA----GRPIYTPSFAFGVLRRFLPEDKVESVKGMTLTADGK--GAVFDVAAADID 610
Query: 310 ELLNKQIPPGNTISKITK-LPALQD 333
L Q N +I K LP LQ+
Sbjct: 611 TFLAGQDNAANVSLEILKALPPLQE 635
>gi|145474053|ref|XP_001423049.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124390109|emb|CAK55651.1| unnamed protein product [Paramecium tetraurelia]
Length = 651
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 111/346 (32%), Positives = 177/346 (51%), Gaps = 34/346 (9%)
Query: 9 SHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEV 67
H + + + + +K YA+ + D+++VY + +TI+F +TKR+ +E+
Sbjct: 231 KHINLIKRHETQTSTTVKHYALQCARNQLSGAIGDVVSVYGGRHARTIIFCETKRECNEI 290
Query: 68 SLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 127
L ++ LHGDI Q QR T GF+ GKF LVAT+VAARGLD P VDLII
Sbjct: 291 ILHSKLPAETQPLHGDIPQQQRTVTFEGFKNGKFKCLVATNVAARGLDFPQVDLIIQCNP 350
Query: 128 PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 187
P D E+++HRSGRTGRAGK+G + + + +ER KF +S P +D++++
Sbjct: 351 PKDIESYIHRSGRTGRAGKDGKDMGL--------IERVERVAKIKFIKISAPQHQDIIKA 402
Query: 188 SAE--QVVATLNGVHPESVEFFTPTAQRLIEE-KGTDALAAALAQLSGFSRPPSSRSLIN 244
S+ Q + L V+ F P AQ +I +ALA ALA +SG+ +RS++
Sbjct: 403 SSRDLQTIKRL-------VDMFQPVAQEIISRCDPVEALARALACVSGYKDKLQNRSMLG 455
Query: 245 HEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVY-PTAADEIGKIHIIADDRVQGAVFDL 303
+G++T Q+ R S F + + FL + + + I + I ++ G FD+
Sbjct: 456 SFEGYIT-QVLRSST---PFQACGYIWKFLKNNFSEQICNSIKGMKKIRNE--NGVAFDI 509
Query: 304 PEEIAKELLNKQ-------IPPGNTISKITKLP-ALQDDGPSSDNY 341
E++ +E N+ G I + T LP +++ S NY
Sbjct: 510 SEDVKEEFENQYQEISQNGYCRGIEIEQATSLPDIIEEQFQSHQNY 555
>gi|410697698|gb|AFV76766.1| DNA/RNA helicase, superfamily II [Thermus oshimai JL-2]
Length = 508
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/235 (43%), Positives = 144/235 (61%), Gaps = 5/235 (2%)
Query: 23 EGIKLYAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 80
EG+ + A + R +LSDL+ V A + IVFT TKR+ +EV+ L + A+
Sbjct: 209 EGVTYQEEAILAPTDRLGLLSDLLFVKAPK-RAIVFTSTKRETEEVAAGLLQAGHPARAI 267
Query: 81 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 140
HGD+SQ RER L FR+G+ VLVATDVAARGLDIP VDL++HY LP PE + HRSGR
Sbjct: 268 HGDLSQSDRERVLKAFREGEVRVLVATDVAARGLDIPEVDLVVHYRLPQSPEAYQHRSGR 327
Query: 141 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 200
TGRAG+ G + + ++R + +LE+ VG F V+PP E+VLE+ + ++A L GV
Sbjct: 328 TGRAGRGGEVVAFYGPREKRELMALEKAVGRTFRRVNPPTPEEVLEAKWQHLLARLAGVP 387
Query: 201 PESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 255
+ + AQRL E + +AA +A L G + P +SL+ E+GW T + T
Sbjct: 388 ERDYKLYLDFAQRLFAEGRVEVVAALMALLLGGA--PKEKSLLTGEEGWRTFKAT 440
>gi|452819914|gb|EME26964.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 671
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 172/330 (52%), Gaps = 35/330 (10%)
Query: 16 NQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII 75
++D K+ + +K YAI +K ++ D+++V+ G K I+FT TKR+AD + +
Sbjct: 294 DKDAKIPKDVKHYAIEVPPFAKEAVIGDILSVFG-GEKCIIFTPTKREADMLGSSEYIRD 352
Query: 76 ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN-DPET- 133
S +HGDI Q RE +NGFR+GKF L+ATDVAARG+DIPNVD ++ P PE+
Sbjct: 353 ESTVIHGDIPQDGRELAINGFRKGKFRNLIATDVAARGIDIPNVDFVLMTYTPTPTPESI 412
Query: 134 --FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE- 190
+VHRSGRTGRAG +G ++L+++ +++ + LER +G +FE + PP E +L S E
Sbjct: 413 DMYVHRSGRTGRAGNKGKSMLIYSQAEKDKLLRLERALGIRFERLHPPSSEQLLMVSLER 472
Query: 191 --------------QVVATL----NGVHPESVEFFT-------PTAQRLIEEKGTDALAA 225
QV+ L +H + T + +E+K L A
Sbjct: 473 SWKKVLGTPDSLVSQVLPILEDKIKNIHHQQYNSVTNGSVLDAIMNETKLEKKLQILLGA 532
Query: 226 ALAQLSGFSRPPSSRSLINHEQGWVTLQL--TRDSAFSRGFMSARSVMGFLSDVYPTAAD 283
ALA+L GF RSL+ + G+ T + R A +GF + LS+ P
Sbjct: 533 ALARLGGFHSTVQHRSLLTSKHGFATFHIQDNRPIAKRKGF-GVHFLRRILSESLPDLVK 591
Query: 284 EIGKI-HIIADDRVQGAVFDLPEEIAKELL 312
+ I ++ A+FD+ E++A L+
Sbjct: 592 DTEAISKVVVYPSGYEALFDVSEKVASSLV 621
>gi|360044772|emb|CCD82320.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 710
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 119/398 (29%), Positives = 182/398 (45%), Gaps = 51/398 (12%)
Query: 10 HSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG--GKTIVFTQTKRDADEV 67
H + + Q+ K + + A+ S+ LSD+I VY KG + IVF + K+DADE+
Sbjct: 305 HLSLIDEQETKTSTNVTHLALLCPYESRAATLSDVIKVYCKGRESRCIVFCERKKDADEL 364
Query: 68 SLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 127
S + LHG + Q +RE L FR GK+ L+ T+VAARGLD+PNVDL+I
Sbjct: 365 SASDAMSGDCHVLHGSVPQDKRELVLQRFRDGKYRTLLTTNVAARGLDVPNVDLVIQCHP 424
Query: 128 PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 187
P D E ++HRSGRTGRA + GT+I +T +R + +E G F +S P + D+ +
Sbjct: 425 PRDIEDYIHRSGRTGRADRSGTSICFYTYKERSMLSRIENMAGITFRRISAPTINDITTA 484
Query: 188 SAEQVVATLNGVHPESVEFFTPTAQRL-----------------IEEKGTD--------- 221
E+++ T + V + F P A + ++ G D
Sbjct: 485 WGEEILKTFSNVPKSTWSTFVPLALSIANQLAQNSKTGKVKKDSCDDLGVDDDKTPGRKP 544
Query: 222 -------ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFL 274
L ALA LSG SRS + + G +L + F++ + F
Sbjct: 545 KSKDILRVLCCALACLSGKEGAFESRSALTAQIGKTAYKLELN------FIARSKGLAFA 598
Query: 275 SDVYPTAADEIGKIHIIADDR-VQGAVFDLPEEIAKELLNKQIP--PGNTISKITKLPAL 331
+ + + +H ++ R G VFDLP E E + P +S ++K+P L
Sbjct: 599 TLRNHLPENIVNSVHSLSFIRGKMGYVFDLPSE-HDEFVKSTWPNDAQAKLSLLSKIPEL 657
Query: 332 QDD----GPSSDNYGRFSSRDRFSRGGGSRFSRGGARG 365
+++ S NYG + S RF+ G F R G
Sbjct: 658 EEEEFFNQGRSGNYGSWQS--RFNGGSRQSFKRSYNSG 693
>gi|255559124|ref|XP_002520584.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223540244|gb|EEF41817.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 254
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/105 (70%), Positives = 86/105 (81%)
Query: 78 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
EALHGDISQ QRERTL+GFR G F +LVATDVAARGLD+PNVDL+IHY LPN ETFVHR
Sbjct: 8 EALHGDISQSQRERTLSGFRSGSFNILVATDVAARGLDVPNVDLVIHYALPNCSETFVHR 67
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 182
SGRTGRAGK+GTAIL++T Q R V+ ER++GC+F + VE
Sbjct: 68 SGRTGRAGKKGTAILVYTPDQTRQVKIYEREIGCRFTELPRITVE 112
>gi|328949667|ref|YP_004367002.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis
DSM 14884]
gi|328449991|gb|AEB10892.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis
DSM 14884]
Length = 517
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 107/278 (38%), Positives = 157/278 (56%), Gaps = 13/278 (4%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
V N + A + AI ++ +LSD++ Y G+ IVFT+TK + D ++ AL
Sbjct: 202 VANLVKDEAVTYRELAIEAPTATRIAVLSDVLHAYG-AGRAIVFTRTKAETDALATALAG 260
Query: 74 I-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
A+EA+HGD+SQ RER + FR+G VLVATDVAARGLD+P V+L++HY LP E
Sbjct: 261 RRHAAEAVHGDLSQAARERVVARFRKGLVRVLVATDVAARGLDVPEVELVVHYRLPERVE 320
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+ HRSGRTGRAG+ GT +L++ +RRTV LER + +FE ++PP +V + +
Sbjct: 321 VYQHRSGRTGRAGRTGTVVLLYGPRERRTVADLERALRRRFERLAPPTPGEVQRAQLAAL 380
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 252
+ + A+ + T++LA LA L G + P RSL+ E+GWVTL
Sbjct: 381 LQRAAAQPEADRAVWREVARDWVARGDTESLAGLLAMLLGGA--PPQRSLLTGEEGWVTL 438
Query: 253 QLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHI 290
+L R +AR V+G L A E+G++ +
Sbjct: 439 ELK-----GRNLTTAR-VVGALRH---AGAGEVGRVSV 467
>gi|194706694|gb|ACF87431.1| unknown [Zea mays]
Length = 255
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 72/110 (65%), Positives = 91/110 (82%), Gaps = 1/110 (0%)
Query: 78 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
+ALHGDISQ+QRERTL+GFR G+F +LVATDVAARGLDIPNVDL++HYE+PN E FVHR
Sbjct: 8 QALHGDISQNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLVVHYEIPNTSELFVHR 67
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF-EFVSPPVVEDVLE 186
SGRT RAGK+G+AIL++T Q R VR +E+D+GC+F E PV ++ +
Sbjct: 68 SGRTARAGKKGSAILIYTYEQTRAVRVIEQDIGCRFTELPKMPVSDEAAD 117
>gi|403331283|gb|EJY64580.1| DEAD/DEAH box helicase family protein [Oxytricha trifallax]
Length = 1264
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 113/174 (64%), Gaps = 15/174 (8%)
Query: 20 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIAS-- 77
K A+ ++ AI+ ++ DL+ +Y GG++IVFT+TK DA+ S+I+S
Sbjct: 650 KTAKRVRHIAINCPFYKTEQVILDLLMMYGTGGRSIVFTKTKSDAN-------SLISSDR 702
Query: 78 ------EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 131
+ +HGDI QH RE TL F++G+ VLVATDVA+RGLDIPNV+LI+ E P DP
Sbjct: 703 FSKNDIQVMHGDIPQHSREMTLRAFKEGRLKVLVATDVASRGLDIPNVELIVQTEPPQDP 762
Query: 132 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 185
ET++HR+GRT RAGKEGT I+++ + + + +E+ G +FE +S P +V+
Sbjct: 763 ETYIHRAGRTARAGKEGTCIVLYQNKTQYMMEQIEQRAGIQFEQMSAPSPSEVM 816
>gi|256083212|ref|XP_002577843.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 794
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 118/393 (30%), Positives = 181/393 (46%), Gaps = 51/393 (12%)
Query: 10 HSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG--GKTIVFTQTKRDADEV 67
H + + Q+ K + + A+ S+ LSD+I VY KG + IVF + K+DADE+
Sbjct: 389 HLSLIDEQETKTSTNVTHLALLCPYESRAATLSDVIKVYCKGRESRCIVFCERKKDADEL 448
Query: 68 SLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 127
S + LHG + Q +RE L FR GK+ L+ T+VAARGLD+PNVDL+I
Sbjct: 449 SASDAMSGDCHVLHGSVPQDKRELVLQRFRDGKYRTLLTTNVAARGLDVPNVDLVIQCHP 508
Query: 128 PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 187
P D E ++HRSGRTGRA + GT+I +T +R + +E G F +S P + D+ +
Sbjct: 509 PRDIEDYIHRSGRTGRADRSGTSICFYTYKERSMLSRIENMAGITFRRISAPTINDITTA 568
Query: 188 SAEQVVATLNGVHPESVEFFTPTAQRL-----------------IEEKGTD--------- 221
E+++ T + V + F P A + ++ G D
Sbjct: 569 WGEEILKTFSNVPKSTWSTFVPLALSIANQLAQNSKTGKVKKDSCDDLGVDDDKTPGRKP 628
Query: 222 -------ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFL 274
L ALA LSG SRS + + G +L + F++ + F
Sbjct: 629 KSKDILRVLCCALACLSGKEGAFESRSALTAQIGKTAYKLELN------FIARSKGLAFA 682
Query: 275 SDVYPTAADEIGKIHIIADDR-VQGAVFDLPEEIAKELLNKQIP--PGNTISKITKLPAL 331
+ + + +H ++ R G VFDLP E E + P +S ++K+P L
Sbjct: 683 TLRNHLPENIVNSVHSLSFIRGKMGYVFDLPSE-HDEFVKSTWPNDAQAKLSLLSKIPEL 741
Query: 332 QDD----GPSSDNYGRFSSRDRFSRGGGSRFSR 360
+++ S NYG + S RF+ G F R
Sbjct: 742 EEEEFFNQGRSGNYGSWQS--RFNGGSRQSFKR 772
>gi|384440186|ref|YP_005654910.1| ATP-dependent RNA helicase [Thermus sp. CCB_US3_UF1]
gi|359291319|gb|AEV16836.1| ATP-dependent RNA helicase [Thermus sp. CCB_US3_UF1]
Length = 512
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/236 (42%), Positives = 150/236 (63%), Gaps = 7/236 (2%)
Query: 23 EGIKLYAISTTATSKR-TILSDLITVYAKGGK-TIVFTQTKRDADEVSLALTSI-IASEA 79
EG+ + A S+R ++LSDL+ Y K K IVFT+TK + +EV+ L + + A
Sbjct: 209 EGVTYREEALLAPSERLSLLSDLL--YVKSPKRAIVFTRTKAETEEVATGLLRLGHPARA 266
Query: 80 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 139
+HGD+SQ RER + FR G+ +LVATDVAARGLDIP VDL++H+ LP+ PET+ HRSG
Sbjct: 267 IHGDLSQADRERVMRAFRDGEVRILVATDVAARGLDIPEVDLVVHFRLPDKPETYQHRSG 326
Query: 140 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV 199
RTGRAG+ G ++++ + ++R + LER VG F+ V+PP E+VLE+ ++A L V
Sbjct: 327 RTGRAGRGGEVVILYGNREKRELAELERAVGRTFKRVNPPTPEEVLEAKWHHLLARLARV 386
Query: 200 HPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 255
+ + + A RL E + +AA +A L G + P +SL+ E+GW+T + T
Sbjct: 387 PEKDYKLYLDFAGRLFAEGRVEVVAALMALLLGGA--PREKSLLTGEEGWLTFKAT 440
>gi|320451062|ref|YP_004203158.1| DEAD/DEAH box helicase [Thermus scotoductus SA-01]
gi|320151231|gb|ADW22609.1| DEAD-box ATP-dependent RNA helicase [Thermus scotoductus SA-01]
Length = 521
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 107/268 (39%), Positives = 155/268 (57%), Gaps = 15/268 (5%)
Query: 23 EGIKLYAISTTATSKR-TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 80
EGI + A R ++LSD++ V A + IVFT+TK + +EV+ L + + A+
Sbjct: 209 EGITYQEEAIPAPGDRLSLLSDVLFVKAPK-RAIVFTRTKAETEEVATGLLRLGHPARAI 267
Query: 81 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 140
HGD+SQ RER + FR+G+ VLVATDVAARGLDIP VDL++HY P+ PET+ HRSGR
Sbjct: 268 HGDLSQTDRERVMRAFREGEVRVLVATDVAARGLDIPEVDLVVHYRFPDKPETYQHRSGR 327
Query: 141 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 200
TGRAG+ G ++++ +RR + LER VG + V+PP E+VLE+ ++A L V
Sbjct: 328 TGRAGRGGEVVILYGPRERRELSELERAVGRTLKRVNPPTPEEVLEAKWHHLLARLARVP 387
Query: 201 PESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAF 260
+ + A RL E + +AA +A L G + P +SL+ E+GW+T + T
Sbjct: 388 ERDYKLYQDFASRLFAEGRVEVVAALMALLLGGA--PKEKSLLTGEEGWLTFKAT----- 440
Query: 261 SRGFMSARSVMGFLSDVYPTAADEIGKI 288
R + L + A E+GKI
Sbjct: 441 -----GPRLTLPRLVALLKEAGLEVGKI 463
>gi|46200197|ref|YP_005864.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB27]
gi|46197825|gb|AAS82237.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB27]
Length = 517
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 168/289 (58%), Gaps = 17/289 (5%)
Query: 29 AISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQH 87
A+ + +LSDL+ V A + +VFT+TK + +E++ L + ++ALHGD+SQ
Sbjct: 224 AVPAPVRGRLEVLSDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQG 282
Query: 88 QRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE 147
+RER L FRQG+ VLVATDVAARGLDIP VDL++HY LP+ E + HRSGRTGRAG+
Sbjct: 283 ERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRG 342
Query: 148 GTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFF 207
G +L++ +RR V +LER VG +F+ V+PP E+VLE+ ++A L V + +
Sbjct: 343 GRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLY 402
Query: 208 TPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT-------LQLTRDSAF 260
A RL E + +AA LA L G + + RSL+ E+GW T L L R A
Sbjct: 403 QDFAGRLFAEGRVEVVAALLALLLGGAP--AERSLLTGEEGWRTYKATGPRLSLPRLVAL 460
Query: 261 SRGF-----MSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLP 304
+G A + GF D+ P A E+ + + RV+G + ++P
Sbjct: 461 LKGQGLEVGKVAEAEGGFYVDLRPEARPEVAGLRLEPARRVEG-LLEIP 508
>gi|259090291|pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 168/289 (58%), Gaps = 17/289 (5%)
Query: 29 AISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQH 87
A+ + +LSDL+ V A + +VFT+TK + +E++ L + ++ALHGD+SQ
Sbjct: 7 AVPAPVRGRLEVLSDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQG 65
Query: 88 QRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE 147
+RER + FRQG+ VLVATDVAARGLDIP VDL++HY +P+ E + HRSGRTGRAG+
Sbjct: 66 ERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRG 125
Query: 148 GTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFF 207
G +L++ +RR V +LER VG +F+ V+PP E+VLE+ ++A L V + +
Sbjct: 126 GRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLY 185
Query: 208 TPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT-------LQLTRDSAF 260
A RL E + +AA LA L G + + RSL+ E+GW T L L R A
Sbjct: 186 QDFAGRLFAEGRVEVVAALLALLLGGAP--AERSLLTGEEGWRTYKATGPRLSLPRLVAL 243
Query: 261 SRGF-----MSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLP 304
+G A + GF D+ P A E+ + + RV+G + ++P
Sbjct: 244 LKGQGLEVGKVAEAEGGFYVDLRPEARPEVAGLRLEPARRVEG-LLEIP 291
>gi|82539303|ref|XP_724049.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23478563|gb|EAA15614.1| Unknown protein [Plasmodium yoelii yoelii]
Length = 635
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 125/215 (58%), Gaps = 19/215 (8%)
Query: 14 VGNQDEKLAEGIKLYAISTT--ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL 71
V N K ++ I+ AI T K +L D+I V + GG+ I+FT+TK +AD
Sbjct: 343 VINTINKTSKTIQHIAIKTPYDIKEKAMLLEDIILVKSNGGQVIIFTRTKLEAD------ 396
Query: 72 TSIIASE---------ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 122
I+ASE LHG+I+Q RE T+ FR G F VL+ATD+AARGLDI NVDLI
Sbjct: 397 --ILASEGSFNYLNFSVLHGNIAQSTREHTMQRFRNGMFQVLIATDIAARGLDISNVDLI 454
Query: 123 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 182
I P P ++HRSGRTGRA K+G +I++F++ + V +E++ G KF S P E
Sbjct: 455 IQCYPPTYPAIYIHRSGRTGRANKKGISIVLFSNEDKNDVIKIEKNCGIKFLTESLPSNE 514
Query: 183 DVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEE 217
V S ++ ++ + V+ E + FF +A LIE+
Sbjct: 515 QVFHSVSKIILKKIENVNSEVLPFFYKSANELIEK 549
>gi|55980078|ref|YP_143375.1| ATP-dependent RNA helicase [Thermus thermophilus HB8]
gi|55771491|dbj|BAD69932.1| ATP-dependent RNA helicase [Thermus thermophilus HB8]
Length = 517
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 166/289 (57%), Gaps = 17/289 (5%)
Query: 29 AISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQH 87
A+ + +LSDL+ V A + +VFT+TK + +E++ L + ++ALHGD+SQ
Sbjct: 224 AVPAPVRGRLEVLSDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLGHLAQALHGDLSQG 282
Query: 88 QRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE 147
+RER L FRQG+ VLVATDVAARGLDIP VDL++HY LP+ E + HRSGRTGRAG+
Sbjct: 283 ERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRG 342
Query: 148 GTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFF 207
G +L++ +RR V +LER VG +F+ V+PP E+VLE+ ++A L V +
Sbjct: 343 GRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLH 402
Query: 208 TPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT-------LQLTRDSAF 260
A RL E + +AA LA L G + P +SL+ E+GW T L L R A
Sbjct: 403 LDFAGRLFSEGRVEVVAALLALLLGGA--PKEKSLLTGEEGWRTYKATGPRLSLPRLVAL 460
Query: 261 SRGF-----MSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLP 304
+G A + G D+ P A E+ + + RV+G + ++P
Sbjct: 461 LKGQGLEVGKIAEAEGGLYVDLRPEARPEVAGLRLEPARRVEG-LLEIP 508
>gi|2231116|emb|CAA65745.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB8]
Length = 510
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 166/289 (57%), Gaps = 17/289 (5%)
Query: 29 AISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQH 87
A+ + +LSDL+ V A + +VFT+TK + +E++ L + ++ALHGD+SQ
Sbjct: 217 AVPAPVRGRLEVLSDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLGHLAQALHGDLSQG 275
Query: 88 QRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE 147
+RER L FRQG+ VLVATDVAARGLDIP VDL++HY LP+ E + HRSGRTGRAG+
Sbjct: 276 ERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRG 335
Query: 148 GTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFF 207
G +L++ +RR V +LER VG +F+ V+PP E+VLE+ ++A L V +
Sbjct: 336 GRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLH 395
Query: 208 TPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT-------LQLTRDSAF 260
A RL E + +AA LA L G + P +SL+ E+GW T L L R A
Sbjct: 396 LDFAGRLFSEGRVEVVAALLALLLGGA--PKEKSLLTGEEGWRTYKATGPRLSLPRLVAL 453
Query: 261 SRGF-----MSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLP 304
+G A + G D+ P A E+ + + RV+G + ++P
Sbjct: 454 LKGQGLEVGKIAEAEGGLYVDLRPEARPEVAGLRLEPARRVEG-LLEIP 501
>gi|124506009|ref|XP_001351602.1| ATP-dependent helicase, putative [Plasmodium falciparum 3D7]
gi|23504529|emb|CAD51409.1| ATP-dependent helicase, putative [Plasmodium falciparum 3D7]
gi|156072126|gb|ABU45414.1| DEAD-box helicase 5 [Plasmodium falciparum]
Length = 755
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/314 (32%), Positives = 166/314 (52%), Gaps = 34/314 (10%)
Query: 20 KLAEGIKLYAIST--TATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIAS 77
K A+ IK AI T K +L D+I V + GG+ I+FT+TK +AD I+ S
Sbjct: 399 KTAKNIKHIAIKTPYDIKEKALLLEDIILVKSNGGQVIIFTRTKLEAD--------ILCS 450
Query: 78 E---------ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP 128
E LHG+I+Q RE T+ FRQG F +L+ATD+A+RGLDI NVDL+I P
Sbjct: 451 EGSFKSLSFAVLHGNIAQSTREYTMQRFRQGMFQILIATDIASRGLDISNVDLVIQCFPP 510
Query: 129 NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS 188
N ++HR+GRTGRA K+GT+++++++ ++ + +E++ G KF + P E V +
Sbjct: 511 NYSAVYIHRAGRTGRANKKGTSLVLYSNEDKQDLIKIEKNCGIKFNMETLPNNEQVFHCA 570
Query: 189 AEQVVATLNGVHPESVEFFTPTAQRLIEEKGT------DALAAALAQLSGFSRPPSSRSL 242
+ + V+ E + FF TA+ LI + + + ++ LA ++ RSL
Sbjct: 571 SAIASKKVENVNKEILPFFHDTAKELINKSNSLKIDQIELISRCLAIIAK-KEHIKKRSL 629
Query: 243 INHEQGWVTLQLTRDSAFSRGFMSARSVMGFL----SDVYPTAADEIGKIHIIADDRVQG 298
IN VTL +R + S ++ ++ +++ ++I +I I DR
Sbjct: 630 INGLSETVTLNFINK---NRKWSSEADIVYWVNKLSNELNVNTFNKILQIKIDNKDRA-S 685
Query: 299 AVFDLPEEIAKELL 312
+ FD+ E +A+ L
Sbjct: 686 SFFDINENLAELFL 699
>gi|323650132|gb|ADX97152.1| DEAD (asp-glu-ala-asp) box polypeptide 21 [Perca flavescens]
Length = 256
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 138/237 (58%), Gaps = 7/237 (2%)
Query: 76 ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 135
++ ALHGDI Q QRE TL FR G F VLVAT+VAARGLDIP VDL++ P D E+++
Sbjct: 2 STRALHGDIPQKQREITLKSFRNGGFEVLVATNVAARGLDIPEVDLVVQCSPPKDVESYI 61
Query: 136 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT 195
HRSGRTGRAG+ G I + + +R +E G F V P D+++SS++ V
Sbjct: 62 HRSGRTGRAGRTGVCICFYQRKEEDQLRYVENKAGITFRRVGVPTANDIIKSSSKDAVRF 121
Query: 196 LNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 254
L+ V ++ +F +A++LIEE+G DALAAALA +SG + RSL+N + G+ T+Q+
Sbjct: 122 LDSVPAAAIGYFRSSAEKLIEERGAVDALAAALAHISG-ATSLEQRSLLNSDAGYTTVQM 180
Query: 255 TRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 311
+ +S+ L + + + I ++ + G FD+P + KE+
Sbjct: 181 VCSQEMHNLGYAWKSIKEQLGEEF---ENHIQRMTFLKGK--TGVCFDVPADKVKEI 232
>gi|226468796|emb|CAX76426.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Schistosoma japonicum]
gi|226468798|emb|CAX76427.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Schistosoma japonicum]
Length = 622
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 102/333 (30%), Positives = 158/333 (47%), Gaps = 43/333 (12%)
Query: 10 HSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG--GKTIVFTQTKRDADEV 67
H + + Q+ K + + A+ S+ LSD+I VY K + IVF + K+DADE
Sbjct: 218 HLSLIDEQETKASTNVTHLALLCPYESRAATLSDVIKVYCKSRESRCIVFCERKKDADE- 276
Query: 68 SLALTSIIASEA--LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
LA +S++ ++ LHGD+ Q +RE L FR GK+ L+ T+VAARGLD+P+VDL+I
Sbjct: 277 -LAASSVMPTDCHVLHGDVPQDKREFVLQKFRDGKYRTLLTTNVAARGLDVPHVDLVIQC 335
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 185
P D E ++HRSGRTGRA + GT+I +T +R + +E G F +S P + D+
Sbjct: 336 HPPRDVEDYIHRSGRTGRADRSGTSICFYTYKERSMLSKIENMAGITFRRISAPTIHDIT 395
Query: 186 ESSAEQVVATLNGVHPESVEFFTPTAQRLIEE----------------------KGTD-- 221
+ E++ T + + + F P A + ++ K D
Sbjct: 396 AAWGEEISKTFSTIPKSTWSTFMPLAFSVADQLSQNSNSKKIKTNSLDDLKAGSKACDRK 455
Query: 222 --------ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGF 273
AL ALA LSG +RS + + G +L + ++ S+ +
Sbjct: 456 PKSKDVLHALCCALACLSGKEGAIENRSALTAQNGKTAYKLELNFIARSKALAFASLRNY 515
Query: 274 LSDVYPTAADEIGKIHIIADDRVQGAVFDLPEE 306
L + + I + I G VFDLP E
Sbjct: 516 LPE---NVVNSINSLSFIRGK--MGYVFDLPSE 543
>gi|68063293|ref|XP_673656.1| ATP-dependent helicase [Plasmodium berghei strain ANKA]
gi|56491666|emb|CAH95329.1| ATP-dependent helicase, putative [Plasmodium berghei]
Length = 525
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 138/256 (53%), Gaps = 26/256 (10%)
Query: 14 VGNQDEKLAEGIKLYAISTT--ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL 71
V N K ++ I+ AI T K +L D+I V + GG+ I+FT+TK +AD
Sbjct: 237 VINTINKTSKTIQHIAIKTPYDIKEKAMLLEDIILVKSNGGQVIIFTRTKLEAD------ 290
Query: 72 TSIIASE---------ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 122
I+ SE LHG+I+Q RE T+ FR G F VL+ATD+AARGLDI NVDL+
Sbjct: 291 --ILCSEGSFNYLTFSVLHGNIAQSTREHTMQRFRSGMFQVLIATDIAARGLDISNVDLV 348
Query: 123 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 182
I P P ++HRSGRTGRA K+G +I++F++ + V +E++ G KF S P E
Sbjct: 349 IQCYPPTYPAIYIHRSGRTGRANKKGMSIVLFSNEDKNDVIKIEKNCGIKFTTESLPNNE 408
Query: 183 DVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG------TDALAAALAQLSGFSRP 236
V S ++ + + V+ E + FF +A LIE+ D ++ LA +S
Sbjct: 409 QVFHSVSKITLKKIENVNTEVLPFFHKSANELIEKSNLLNINQIDLISRCLAIISK-KEY 467
Query: 237 PSSRSLINHEQGWVTL 252
RSLI+ +TL
Sbjct: 468 IKKRSLISGLSDTITL 483
>gi|449268996|gb|EMC79808.1| Nucleolar RNA helicase 2, partial [Columba livia]
Length = 297
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 85/179 (47%), Positives = 116/179 (64%), Gaps = 2/179 (1%)
Query: 77 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 136
+++LHGDI Q QRE TL GFR G F VL+AT+VAARGLDIP VDL+I P D ++++H
Sbjct: 3 AQSLHGDIPQQQREVTLKGFRTGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDVDSYIH 62
Query: 137 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 196
RSGRTGRAG+ G I +F + ++ +E G F+ V P DV+++S+ L
Sbjct: 63 RSGRTGRAGRTGVCICLFQRREEDLLKQVEHKAGITFKRVGVPSATDVIKASSNDAKKLL 122
Query: 197 NGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 254
+ P +V++F +AQ LI+EKG ALAAALA +SG S RSL+N G+VT+ L
Sbjct: 123 EAIPPSAVDYFKKSAQELIDEKGAVAALAAALAHISGASY-IQQRSLLNSTAGFVTMVL 180
>gi|313219322|emb|CBY16445.1| unnamed protein product [Oikopleura dioica]
Length = 557
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 152/270 (56%), Gaps = 14/270 (5%)
Query: 52 GKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111
G+ ++F TKRD +++L+ +I ++ +HGDI Q RE+TL FR GK VLV TDVAA
Sbjct: 284 GRAMIFASTKRDTSDLALS-DNISDAQMIHGDIEQATREQTLQAFRDGKMRVLVCTDVAA 342
Query: 112 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 171
RGLD+P VDL+I E P+D ++++HRSGRTGRAG+ G I ++ Q ++ +E G
Sbjct: 343 RGLDVPEVDLVIQTEPPSDIDSYIHRSGRTGRAGRSGVCICLYKPKQAYQLKQVENVAGF 402
Query: 172 KFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA-------LA 224
KFE P ++ E++A+ V + + +S F A+ +I E + LA
Sbjct: 403 KFEHRGPVSAVELEEAAAKDVKRQIAKLPEKSSARFLEIAREMIAEAEEEEESSTEKLLA 462
Query: 225 AALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE 284
+A+A +SG + +SRSLI+ ++G+ T Q++ + ++ + + +S+ A E
Sbjct: 463 SAIAIMSGVT-DSTSRSLISGKKGFQTWQMSVSFEMNNQYLIFKLLEKGISE---KARVE 518
Query: 285 IGKIHIIADDRVQGAVFDLPEEIAKELLNK 314
+ + D GA FDLP + E+ K
Sbjct: 519 ARNVRVFMDR--MGAAFDLPTTMTNEVSEK 546
>gi|323450835|gb|EGB06714.1| hypothetical protein AURANDRAFT_28650, partial [Aureococcus
anophagefferens]
Length = 482
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 98/139 (70%), Gaps = 1/139 (0%)
Query: 36 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLN 94
++ ++L D+I GG+ IVFT TK++ DE++ +A++ LHGDI Q QRE TL
Sbjct: 344 ARASLLEDIIAAAQGGGRVIVFTSTKKECDELAGGPAFQRLAAQVLHGDIGQAQRETTLA 403
Query: 95 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMF 154
FR+G FTVLVATDVAARG+D+ VDL++ Y P D E +VHRSGRTGRAG++GTA++++
Sbjct: 404 QFRRGAFTVLVATDVAARGIDVKGVDLVVQYRTPRDAEGYVHRSGRTGRAGRDGTAVVLY 463
Query: 155 TSSQRRTVRSLERDVGCKF 173
+ R VRSLER G F
Sbjct: 464 DEREERDVRSLERLTGVTF 482
>gi|384430474|ref|YP_005639834.1| DEAD/DEAH box helicase [Thermus thermophilus SG0.5JP17-16]
gi|333965942|gb|AEG32707.1| DEAD/DEAH box helicase domain protein [Thermus thermophilus
SG0.5JP17-16]
Length = 510
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 112/283 (39%), Positives = 161/283 (56%), Gaps = 16/283 (5%)
Query: 29 AISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQH 87
A+ + +LSDL+ V A + +VFT+TK + +E++ L + ++A+HGD+SQ
Sbjct: 217 AVPAPVRGRLEVLSDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQAIHGDLSQG 275
Query: 88 QRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE 147
+RER L FRQG+ VLVATDVAARGLDIP VDL++HY LP+ E + HRSGRTGRAG+
Sbjct: 276 ERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRG 335
Query: 148 GTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFF 207
G +L++ +RR V +LER VG +F+ V+PP E+VLE+ ++A L V +
Sbjct: 336 GRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLH 395
Query: 208 TPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT-------LQLTRDSAF 260
A RL E + +AA LA L G + + RSL+ E+GW T L L R A
Sbjct: 396 LDFAGRLFSEGRVEVVAALLALLLGGAP--AERSLLTGEEGWRTYKATGPRLSLPRLVAL 453
Query: 261 SRGF-----MSARSVMGFLSDVYPTAADEIGKIHIIADDRVQG 298
+G A + G D+ P A E+ + +V+G
Sbjct: 454 LKGQGLEVGKIAEAEGGLYVDLRPGARPEVQDFRLEPTRKVEG 496
>gi|386361220|ref|YP_006059465.1| DNA/RNA helicase [Thermus thermophilus JL-18]
gi|383510247|gb|AFH39679.1| DNA/RNA helicase, superfamily II [Thermus thermophilus JL-18]
Length = 510
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 112/283 (39%), Positives = 161/283 (56%), Gaps = 16/283 (5%)
Query: 29 AISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQH 87
A+ + +LSDL+ V A + +VFT+TK + +E++ L + ++A+HGD+SQ
Sbjct: 217 AVPAPVRGRLEVLSDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQAIHGDLSQG 275
Query: 88 QRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE 147
+RER L FRQG+ VLVATDVAARGLDIP VDL++HY LP+ E + HRSGRTGRAG+
Sbjct: 276 ERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRG 335
Query: 148 GTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFF 207
G +L++ +RR V +LER VG +F+ V+PP E+VLE+ ++A L V +
Sbjct: 336 GRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLH 395
Query: 208 TPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT-------LQLTRDSAF 260
A RL E + +AA LA L G + + RSL+ E+GW T L L R A
Sbjct: 396 LDFAGRLFSEGRVEVVAALLALLLGGAP--AERSLLTGEEGWRTYKATGPRLSLPRLVAL 453
Query: 261 SRGF-----MSARSVMGFLSDVYPTAADEIGKIHIIADDRVQG 298
+G A + G D+ P A E+ + +V+G
Sbjct: 454 LKGQGLEVGKIAEAEGGLYVDLRPGARPEVQDFRLEPTRKVEG 496
>gi|323140806|ref|ZP_08075722.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium
succinatutens YIT 12067]
gi|322414722|gb|EFY05525.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium
succinatutens YIT 12067]
Length = 529
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 117/181 (64%), Gaps = 2/181 (1%)
Query: 52 GKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 110
GK I+F +TK+ D++S+AL+S +E LHGD+SQ+QR+R + FR+G VL+ATDVA
Sbjct: 242 GKLIIFCRTKKGVDDLSIALSSRGYMAEGLHGDLSQNQRDRVMKKFREGAVDVLIATDVA 301
Query: 111 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 170
ARG+D+ N+ +I++++P DPE++VHR GRTGRAG G A+ T + R ++ +ER V
Sbjct: 302 ARGIDVDNITHVINFDIPQDPESYVHRIGRTGRAGNTGVAMTFITPREFRQLKLIERTVK 361
Query: 171 CKFEFVSPPVVEDVLESSAEQVVATLNGV-HPESVEFFTPTAQRLIEEKGTDALAAALAQ 229
K + P +V+E +Q+++ + V + + P A+ L+++ + +AAA +
Sbjct: 362 TKIQRRQLPTAANVIERQRDQIISKMQTVLELNAYHDYMPIAESLLDDYSAEEVAAAALK 421
Query: 230 L 230
L
Sbjct: 422 L 422
>gi|255081336|ref|XP_002507890.1| predicted protein [Micromonas sp. RCC299]
gi|226523166|gb|ACO69148.1| predicted protein [Micromonas sp. RCC299]
Length = 631
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 179/333 (53%), Gaps = 20/333 (6%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALT 72
VG++ +K + ++ I+ + + ++ DLI G G+ IVF TKRD E+ AL
Sbjct: 244 VGDEKQKASGSVQHMLINCQWSERTDLVCDLIRAKVPGDGRVIVFCDTKRDCGELQEALQ 303
Query: 73 SII--ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPND 130
+ ++ALHGD++Q QRE L+GFR+ KF LVATDVAARGLDI V+L++ E P +
Sbjct: 304 KELEKGAKALHGDVNQSQREVVLDGFRKNKFQTLVATDVAARGLDISGVELVVQCEPPKE 363
Query: 131 PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE 190
ET++HRSGRTGR G G + + T + ++ER G KF + PP +++ ++A+
Sbjct: 364 AETYIHRSGRTGRGGATGICVTLCTPRNEWAIPNIERKGGFKFVRIGPPQPAEMVAAAAK 423
Query: 191 QVVATLNGVHPESVEFFTPTAQRLIEEKG---------TDALAAALAQLSGFSRPPSSRS 241
V+ + VH + + F A+ L+ E T+ LAAALA+L+G RS
Sbjct: 424 IVIQQVRAVHKGAAKMFMDAARELLAEGAGEHDEGADPTEMLAAALAKLAGHGE-LRQRS 482
Query: 242 LINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVF 301
L+ G TL T + + + V FL ++ ++ + AD + GAVF
Sbjct: 483 LLTSHTGQTTLLFT--AGNNTEIRTPTYVWNFLKQRMDEKDIQLRRLTLQADSK--GAVF 538
Query: 302 DLPEEIAKELL---NKQIPPGNTISKITKLPAL 331
D+P E+ ++ L + + P TIS +LP L
Sbjct: 539 DVPSELQEKFLALSDTKGPTPITISVCEELPEL 571
>gi|440297912|gb|ELP90553.1| ATP-dependent RNA helicase DDX50, putative [Entamoeba invadens IP1]
Length = 759
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 178/360 (49%), Gaps = 18/360 (5%)
Query: 20 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA 79
++ K YA +K + LI Y G+TIVF TK++ ++ + + ++++
Sbjct: 342 QMPSNAKHYACMCFPYNKVETIVPLIKTYNPNGRTIVFCDTKKECGDICIKIGEHLSAQM 401
Query: 80 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 139
+HGDI+Q R +T+ GF++ +F+VL+ATDV ARG+DI VDLII +P D +VHR+G
Sbjct: 402 IHGDINQTLRTQTIKGFKEDRFSVLIATDVVARGIDISGVDLIIMTRVPKDIPQYVHRAG 461
Query: 140 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV 199
RT RAGKEG + ++T ++ + +E+ V KFE + P E + + + + V
Sbjct: 462 RTARAGKEGITVTLYTMAEISALGMIEKSVNFKFERIGVPQPETLARFAVLGLSGDMKDV 521
Query: 200 HPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPS---SRSLINHEQGWVTLQLTR 256
TAQ++++E+ + A+A+L PS SL+ + +T+
Sbjct: 522 KKSLYNVHMDTAQQVLDEEKDPKI--AVAKLITLLYKPSRGTDYSLLCGKSELLTVFFNT 579
Query: 257 DSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQI 316
++ S V +S V + K II++D FD EIA++ ++
Sbjct: 580 ----TKEIKSTNYVKTLVSTVVGVGCMDKIKEVIISED--HNIYFDAFPEIARKFVDMAT 633
Query: 317 PPGNTISKI---TKLP---ALQDDGPSSDNYGRFSSR-DRFSRGGGSRFSRGGARGGARG 369
+I++ KLP + + S D+YG + + DR +R GG S G + + G
Sbjct: 634 DNDRSITECYLAQKLPEKLEIHNRFGSRDSYGSYGRQNDRQTRFGGYGSSNYGDKNNSYG 693
>gi|428169310|gb|EKX38245.1| hypothetical protein GUITHDRAFT_158516 [Guillardia theta CCMP2712]
Length = 397
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 104/163 (63%)
Query: 13 QVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT 72
VGN + + I+ AI+ S +S ++ Y KGG+ +VF +TK + D ++ +
Sbjct: 207 MVGNDSTRTSITIEHIAIACGYDSHANAISRVVKKYGKGGRVLVFCRTKLEVDRLANHPS 266
Query: 73 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+ +HGD+SQ QRERTL FR GKF +LVATDVAARG+D+P V+L+I +P D
Sbjct: 267 LKTTARVIHGDVSQLQRERTLQDFRSGKFLILVATDVAARGIDVPEVELVIQTCVPEDSN 326
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 175
TFVHRSGRTGRAG++G +++ ++ + R + +E ++G +F
Sbjct: 327 TFVHRSGRTGRAGRKGVSVVFYSGGEERDLLEIEEELGIQFHL 369
>gi|217035426|pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
gi|217035427|pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
gi|217035428|pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
gi|217035429|pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
gi|217035430|pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
gi|217035431|pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 87/190 (45%), Positives = 123/190 (64%), Gaps = 2/190 (1%)
Query: 29 AISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQH 87
A+ + +LSDL+ V A + +VFT+TK + +E++ L + ++ALHGD+SQ
Sbjct: 10 AVPAPVRGRLEVLSDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQG 68
Query: 88 QRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE 147
+RER L FRQG+ VLVATDVAARGLDIP VDL++HY LP+ E + HRSGRTGRAG+
Sbjct: 69 ERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRG 128
Query: 148 GTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFF 207
G +L++ +RR V +LER VG +F+ V+PP E+VLE+ ++A L V + +
Sbjct: 129 GRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLY 188
Query: 208 TPTAQRLIEE 217
A RL E
Sbjct: 189 QDFAGRLFAE 198
>gi|300120547|emb|CBK20101.2| unnamed protein product [Blastocystis hominis]
Length = 553
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 104/319 (32%), Positives = 165/319 (51%), Gaps = 21/319 (6%)
Query: 1 MLNYFVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQ 59
M Y + + + EK + ++ + ++ +++DLI VY G+ IVF
Sbjct: 224 MTKYMHPDKVTVDLVTEKEKASVDVRHLVLRCPWEARAKVIADLIEVYCGVDGRAIVFCD 283
Query: 60 TKRDADEVS--LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 117
K+ +E++ L SI + LHGDI Q RE+TL F+ GKF LVATDVAARGLDI
Sbjct: 284 MKKSCNELAGEECLRSI--AGVLHGDIPQKTREQTLKDFKDGKFRCLVATDVAARGLDIQ 341
Query: 118 NVDLIIHYELP------NDPETFVHRSGRTGRAGKEGTAILMFTS-SQRRTVRSLERDVG 170
+ L+I+ E P D ET++HRSGRTGRAG++G I + T +Q ++S+E+ VG
Sbjct: 342 GITLVINREPPATRSGVADVETYIHRSGRTGRAGRKGVCITLSTGFAQEAVLQSIEKAVG 401
Query: 171 CKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD---ALAAAL 227
F + P D+L++ AE++V + + + + A+ ++ K +D A+A L
Sbjct: 402 NAFTRIGAPQPSDLLKARAERLVERIGDLDEQLITKMDSLAEEVL-AKTSDPRAAVARCL 460
Query: 228 AQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGK 287
G +RS++ +G+VT+ + F + V G L +P K
Sbjct: 461 CLAVGAFGKMKTRSILTSNEGFVTVMYQSLNPFR----TVSYVWGALRRYFPEDVVTSIK 516
Query: 288 IHIIADDRVQGAVFDLPEE 306
+ + D +GAVFD+PEE
Sbjct: 517 ANTMTKDE-RGAVFDVPEE 534
>gi|376297958|ref|YP_005169188.1| DEAD/DEAH box helicase [Desulfovibrio desulfuricans ND132]
gi|323460520|gb|EGB16385.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
ND132]
Length = 551
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 112/175 (64%), Gaps = 2/175 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VF +T+ DAD V+ LT +E +HGD++Q QRE+ L+GFR+ K T+LVATDVAARG
Sbjct: 245 LVFVRTRADADLVAARLTQRGYPAEPIHGDLNQAQREKILSGFRERKATILVATDVAARG 304
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+P++ ++++ LP DP+TFVHR+GRTGRAGK+G AI + T ++ R + + + G
Sbjct: 305 IDVPDLTHVVNFALPQDPQTFVHRTGRTGRAGKQGVAITLITPNEFRKLMYIAKSTGIDI 364
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGV-HPESVEFFTPTAQRLIEEKGTDALAAAL 227
P +EDV+ S +VV LN + E + A L+ ++ + + AAL
Sbjct: 365 AKEPLPRIEDVIHSKKRKVVDELNAILEAEGHGAYLAMAGELLHDRPAEEVVAAL 419
>gi|383786573|ref|YP_005471142.1| DNA/RNA helicase [Fervidobacterium pennivorans DSM 9078]
gi|383109420|gb|AFG35023.1| DNA/RNA helicase, superfamily II [Fervidobacterium pennivorans DSM
9078]
Length = 548
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 106/178 (59%), Gaps = 2/178 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF QTK + DE++ L+ + ++ LHGD SQ QRER L+ F++ + +LV TDVAARG
Sbjct: 258 IVFCQTKAEVDEIARKLSDLGYNADGLHGDYSQSQRERVLDKFKKKQLNILVTTDVAARG 317
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+DI + +I+Y +P DPE +VHR GRTGRAGK+G AI T S ++R K
Sbjct: 318 IDIEGLTHVINYSVPRDPEYYVHRIGRTGRAGKKGLAITFVTRSDYYHFTRVKRFTKAKI 377
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQL 230
P+VED+L E VV T+ S E F AQ+LIEE G T+A+ L L
Sbjct: 378 AKDKIPMVEDILNRQLENVVNTIKKESYVSNELFRQVAQKLIEEMGPTEAVEMLLHTL 435
>gi|354557785|ref|ZP_08977043.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
gi|353550579|gb|EHC20016.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
Length = 530
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 115/185 (62%), Gaps = 8/185 (4%)
Query: 52 GKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 110
G+ I+F +TKR DE+ +L + ++ALHGD+SQ QR+R + FR GK +LVATDVA
Sbjct: 246 GQAIIFCRTKRGVDELVASLEARGYFADALHGDLSQQQRDRVMKRFRDGKIELLVATDVA 305
Query: 111 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 170
ARGLDI NV +I++++P DPE++VHR GRTGRAG++G AI + +S + R +R +ER +
Sbjct: 306 ARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLISSKEYRQLRLIERLIK 365
Query: 171 CKFEFVSPPVVEDVLESSA----EQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 226
+ P + DV E A EQ++ L H + + P L+EE + +AAA
Sbjct: 366 TRIIRKELPSLADVSERQADNLKEQLIKLLQKDHLAT---YRPIVSALVEEYDSIDVAAA 422
Query: 227 LAQLS 231
Q +
Sbjct: 423 ALQFA 427
>gi|212721126|ref|NP_001132058.1| uncharacterized protein LOC100193470 [Zea mays]
gi|194693318|gb|ACF80743.1| unknown [Zea mays]
Length = 506
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 71/139 (51%), Positives = 93/139 (66%), Gaps = 3/139 (2%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VGN+ K + +K A+ ++ ++ D+I Y+ GG+TI+FT+TK A E+S
Sbjct: 338 VGNEKLKASASVKHLALPCNKAARAQVIPDIIRCYSHGGRTIIFTETKDSASELS---GL 394
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
I S ALHGD++Q QRE L GFR GKF VLVAT+VAARGLDI +V LII E P D E
Sbjct: 395 IHGSRALHGDVAQAQREVILAGFRSGKFQVLVATNVAARGLDINDVQLIIQCEPPRDVEA 454
Query: 134 FVHRSGRTGRAGKEGTAIL 152
++HRSGRTGRAG G A++
Sbjct: 455 YIHRSGRTGRAGNTGVAVI 473
>gi|168180793|ref|ZP_02615457.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum NCTC 2916]
gi|226950212|ref|YP_002805303.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
botulinum A2 str. Kyoto]
gi|182668220|gb|EDT80199.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum NCTC 2916]
gi|226841562|gb|ACO84228.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A2 str. Kyoto]
Length = 524
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 132/239 (55%), Gaps = 4/239 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TKR DE+ A+ S E +HGD+SQ+QR TL F++ LVATDVAARG
Sbjct: 249 IIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATDVAARG 308
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ N+ +I+Y++P D E++VHR GRTGRA KEGTA + T + ++R +ER K
Sbjct: 309 IDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERITKSKI 368
Query: 174 EFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ P +ED+LE + ++ + + E F P + L + ++AAL ++
Sbjct: 369 KKKELPTLEDILEKKYDNLLNDITSKIEENKYEKFMPMVKTLEQNFDLSQVSAALMEML- 427
Query: 233 FSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHII 291
FS+ S N + V ++L S + ++ +S++ F+ D EIG I I+
Sbjct: 428 FSKEMSFDYTNNKLEAEVPVRLFL-SVGRKDSINVKSLLTFIQDAASVKNHEIGDIDIL 485
>gi|433653854|ref|YP_007297562.1| DNA/RNA helicase, superfamily II [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433292043|gb|AGB17865.1| DNA/RNA helicase, superfamily II [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 514
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 129/246 (52%), Gaps = 23/246 (9%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
TI+F +TK++ DE++ + S E +HGD+SQ+QR TL F++G LVATDVAAR
Sbjct: 243 TIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGILDFLVATDVAAR 302
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+DI NV +I+Y LP D E++VHR GRTGRA + G A + TS + ++ +E+ CK
Sbjct: 303 GIDIENVTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYPALKRIEKATRCK 362
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQL- 230
+ P V+D+LE +++A + + + F P A L EE +AAAL +
Sbjct: 363 IKRKELPTVDDILEVKYNKMIAEIKKTLEKNDYKRFVPLAMELDEEYNLVDVAAALMDMY 422
Query: 231 ------SGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE 284
P R IN L R ++ R+++ L D+ + ++
Sbjct: 423 YGKELYYNDDEPKYVRLFIN---------LGRKDKLNK-----RTLLKLLMDIGDISKED 468
Query: 285 IGKIHI 290
IG I I
Sbjct: 469 IGNIDI 474
>gi|168183134|ref|ZP_02617798.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Bf]
gi|182673701|gb|EDT85662.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Bf]
Length = 524
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 133/239 (55%), Gaps = 4/239 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TKR DE+ A+ S E +HGD+SQ+QR TL F++ LVATDVAARG
Sbjct: 249 IIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATDVAARG 308
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ N+ +I+Y++P D E++VHR GRTGRA KEGTA + T + ++R +ER K
Sbjct: 309 IDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERITKSKI 368
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ P +ED+LE + ++ + + + E F P + L + ++AAL ++
Sbjct: 369 KKKELPTLEDILEKKYDNLLNDIASKIEENKYEKFMPMVKTLEQNFDLSQVSAALMEML- 427
Query: 233 FSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHII 291
FS+ S N + V ++L S + ++ +S++ F+ D EIG I I+
Sbjct: 428 FSKEMSFDYTNNKLEAEVPVRLFL-SVGRKDSINVKSLLTFIQDAASVKNHEIGDIDIL 485
>gi|237796237|ref|YP_002863789.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
botulinum Ba4 str. 657]
gi|229263626|gb|ACQ54659.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Ba4 str. 657]
Length = 524
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 133/239 (55%), Gaps = 4/239 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TKR DE+ A+ S E +HGD+SQ+QR TL F++ LVATDVAARG
Sbjct: 249 IIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATDVAARG 308
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ N+ +I+Y++P D E++VHR GRTGRA KEGTA + T + ++R +ER K
Sbjct: 309 IDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERITKSKI 368
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ P +ED+LE + ++ + + + E F P + L + ++AAL ++
Sbjct: 369 KKKELPTLEDILEKKYDNLLNDIASKIEENKYEKFMPMVKTLEQNFDLSQVSAALMEML- 427
Query: 233 FSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHII 291
FS+ S N + V ++L S + ++ +S++ F+ D EIG I I+
Sbjct: 428 FSKEMSFDYTNNKLEAEVPVRLFL-SVGRKDSINVKSLLTFIQDAASVKNHEIGDIDIL 485
>gi|170754257|ref|YP_001782408.1| DEAD/DEAH box helicase [Clostridium botulinum B1 str. Okra]
gi|429244877|ref|ZP_19208296.1| DEAD/DEAH box helicase [Clostridium botulinum CFSAN001628]
gi|169119469|gb|ACA43305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum B1 str. Okra]
gi|428758067|gb|EKX80520.1| DEAD/DEAH box helicase [Clostridium botulinum CFSAN001628]
Length = 524
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 132/239 (55%), Gaps = 4/239 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TKR DE+ A+ S E +HGD+SQ+QR TL F++ LVATDVAARG
Sbjct: 249 IIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATDVAARG 308
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ N+ +I+Y++P D E++VHR GRTGRA KEGTA + T + ++R +ER + K
Sbjct: 309 IDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERIIKSKI 368
Query: 174 EFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
P +ED+LE + ++ + + E F P + L + ++AAL ++
Sbjct: 369 TKKELPTLEDILEKKYDNLLNDITSKIEENKYEKFMPMVKTLEQNFDLSEVSAALMEML- 427
Query: 233 FSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHII 291
FS+ S N + V ++L S + ++ +S++ F+ D EIG I I+
Sbjct: 428 FSKEMSFDYTNNKLEAEVPVRLFL-SVGRKDSINVKSLLTFIQDSSSVKNHEIGDIDIL 485
>gi|300742137|ref|ZP_07072158.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
gi|300381322|gb|EFJ77884.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
Length = 719
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 126/396 (31%), Positives = 187/396 (47%), Gaps = 92/396 (23%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK++ +EV+ L + + A++GDI Q RERT++ R G+ +LVATDVAARG
Sbjct: 377 IVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRIDILVATDVAARG 436
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + L+++Y++P+D E++VHR GRTGRAG++G AIL T ++ +R +E+ K
Sbjct: 437 LDVERISLVVNYDIPHDTESYVHRIGRTGRAGRDGEAILFVTPREKYMLRQIEKATRQKV 496
Query: 174 EFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA--LAAAL 227
E + P +DV S AEQ+ T + E + FF + E T A +AAAL
Sbjct: 497 EPMHMPTAQDVNSSRKQRFAEQITET---IETEDLNFFRKIIEDYENEHDTTAEDIAAAL 553
Query: 228 AQLSGFSR----------------------------PPSSRSLINH-EQGWVTLQLTRDS 258
A ++ R P R NH ++G V +L
Sbjct: 554 AVIAQQGRAFFLDENDDIARKSRAFADDTKDRGKRGPKKGR---NHSDEGMVNYKLNVGR 610
Query: 259 AFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPP 318
A SR + A +++G L++ +IG I I R + LPE++ K ++
Sbjct: 611 A-SR--VKASAIVGALANEGGIKGSQIGSIDI----RQHFTIVGLPEDLPKGFFDR---- 659
Query: 319 GNTISKITKLPALQDDGPSSDNYGRFSS--RDRFSRGGGSR-FSRGGARGGARGGGSMDR 375
+ TK+ G F + +DR +GGG R F R R G
Sbjct: 660 ----LRDTKIA------------GEFINIRKDRGPQGGGGRSFRRNDRRDG--------- 694
Query: 376 RGFRSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRF 411
GFRS R DD RGGR R G + G R+
Sbjct: 695 -GFRSRR----DDH------RGGRDDRRGKSHGKRY 719
>gi|399888651|ref|ZP_10774528.1| RNA helicase [Clostridium arbusti SL206]
Length = 523
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 111/181 (61%), Gaps = 10/181 (5%)
Query: 55 IVFTQTKRDADEVSLALTSIIAS-----EALHGDISQHQRERTLNGFRQGKFTVLVATDV 109
I+F +TK++ DE L S + S E +HGD+ Q QR TL+ F+ GK T L ATDV
Sbjct: 247 IIFCKTKKNVDE----LVSTMGSKGYNIEGMHGDMKQSQRLSTLSKFKHGKLTFLAATDV 302
Query: 110 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 169
AARG+D+ N+ +I+YELP D E++VHR GRTGRA K GTAI + T + ++ +ERD+
Sbjct: 303 AARGIDVENITHVINYELPQDTESYVHRIGRTGRANKSGTAISLITKKEFSKLKQIERDI 362
Query: 170 GCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALA 228
K + P V+D++ ++ +VA + N ++ + + F P + L + + +AAAL
Sbjct: 363 KSKITKKAVPSVDDIINIKSKNIVAKITNILNDDEYKKFEPIIEDLSSQYSLNQIAAALL 422
Query: 229 Q 229
+
Sbjct: 423 K 423
>gi|154249323|ref|YP_001410148.1| DEAD/DEAH box helicase domain-containing protein [Fervidobacterium
nodosum Rt17-B1]
gi|154153259|gb|ABS60491.1| DEAD/DEAH box helicase domain protein [Fervidobacterium nodosum
Rt17-B1]
Length = 571
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 106/178 (59%), Gaps = 2/178 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF QTK + DE+S L + ++ LHGD SQ+QRER L+ FR+ + +LV TDVAARG
Sbjct: 262 IVFCQTKLEVDEISKKLLDLGYNADGLHGDYSQYQRERVLDKFRKKQLRILVTTDVAARG 321
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+DI + +I+Y +P DPE +VHR GRTGRAGK+G AI T ++R K
Sbjct: 322 IDIDGLTHVINYSVPRDPEYYVHRIGRTGRAGKKGFAITFVTRDDYFHFARVKRFAKAKI 381
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQL 230
S P VED+L E+++ TL S E + AQ++IEE G T+A+ L L
Sbjct: 382 IKDSIPQVEDILNRQLEKLLDTLKNAPKVSNELYKRAAQQIIEEMGPTEAVEMLLHTL 439
>gi|304315659|ref|YP_003850804.1| DEAD/DEAH box helicase [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
gi|302777161|gb|ADL67720.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 514
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 128/246 (52%), Gaps = 23/246 (9%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
TI+F +TK++ DE++ + S E +HGD+SQ+QR TL F++G LVATDVAAR
Sbjct: 243 TIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGNLDFLVATDVAAR 302
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+DI N+ +I+Y LP D E++VHR GRTGRA + G A + TS + ++ +ER+ CK
Sbjct: 303 GIDIENLTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYPALKRIERETKCK 362
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGV-HPESVEFFTPTAQRLIEEKGTDALAAALAQL- 230
P ++D+ + +++ + V + + F P A L EE +AAAL +
Sbjct: 363 IRRKELPTIDDIFQVKYNKMIKDIKRVLENDGYKRFVPLAMELDEEYNLVDVAAALMDMY 422
Query: 231 ------SGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE 284
P R IN L R +R R+++ L D+ + ++
Sbjct: 423 YGKELYYNDDEPKYVRLFIN---------LGRKDKLNR-----RTLLKLLMDIGDISKED 468
Query: 285 IGKIHI 290
IG I I
Sbjct: 469 IGTIDI 474
>gi|153938870|ref|YP_001392080.1| DEAD/DEAH box helicase [Clostridium botulinum F str. Langeland]
gi|384463072|ref|YP_005675667.1| ATP-dependent RNA helicase [Clostridium botulinum F str. 230613]
gi|152934766|gb|ABS40264.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum F str. Langeland]
gi|295320089|gb|ADG00467.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum F str. 230613]
Length = 524
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 131/239 (54%), Gaps = 4/239 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TKR DE+ A+ S E +HGD+SQ+QR TL F++ LVATDVAARG
Sbjct: 249 IIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATDVAARG 308
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ N+ +I+Y++P D E++VHR GRTGRA KEGTA + T + ++R +ER K
Sbjct: 309 IDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERITKSKI 368
Query: 174 EFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
P +ED+LE + ++ + + E F P + L + ++AAL ++
Sbjct: 369 TKKELPTLEDILEKKYDNLLNDITSKIEENKYEKFMPMVKTLEQNFDLSEVSAALMEML- 427
Query: 233 FSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHII 291
FS+ S N + V ++L S + ++ +S++ F+ D EIG I I+
Sbjct: 428 FSKEMSFDYTNNKLEAEVPVRLFL-SVGRKDSINVKSLLTFIQDSSSVKNHEIGDIDIL 485
>gi|148380762|ref|YP_001255303.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. ATCC 3502]
gi|153932415|ref|YP_001385046.1| DEAD/DEAH box helicase [Clostridium botulinum A str. ATCC 19397]
gi|153936759|ref|YP_001388516.1| DEAD/DEAH box helicase [Clostridium botulinum A str. Hall]
gi|148290246|emb|CAL84365.1| ATP-dependent RNA helicase (cold-shock dead-box protein)
[Clostridium botulinum A str. ATCC 3502]
gi|152928459|gb|ABS33959.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. ATCC 19397]
gi|152932673|gb|ABS38172.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. Hall]
Length = 524
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 142/262 (54%), Gaps = 8/262 (3%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TKR DE+ A+ S E +HGD+SQ+QR TL F++ LVATDVAARG
Sbjct: 249 IIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATDVAARG 308
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ N+ +I+Y++P D E++VHR GRTGRA KEGTA + T + ++R +ER + K
Sbjct: 309 IDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERIIKSKI 368
Query: 174 EFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
P +ED+LE + ++ + + E F P + L + ++AAL ++
Sbjct: 369 TKKELPTLEDILEKKYDNLLNDITSKIEENKYEKFMPMVKTLEQNFDLSQVSAALMEML- 427
Query: 233 FSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIA 292
FS+ S + + V ++L S + ++ +S++ F+ D EIG I I+
Sbjct: 428 FSKEMSFDYTNDKLEAEVPVRLFL-SVGRKDSINVKSLLTFIQDEASVKNHEIGDIDILD 486
Query: 293 DDRVQGAVFDLPEEIAKELLNK 314
+ D+ A++++NK
Sbjct: 487 ----KFTFMDVSSSTAEKIINK 504
>gi|239825779|ref|YP_002948403.1| DEAD/DEAH box helicase [Geobacillus sp. WCH70]
gi|239806072|gb|ACS23137.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. WCH70]
Length = 466
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 132/231 (57%), Gaps = 10/231 (4%)
Query: 5 FVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDA 64
F+ H +V + E I+ Y + K IL+ L+ + A IVF +TKR
Sbjct: 196 FMNEPHIVKVKAK-EMTVPNIQQYYLEVQEKKKFDILTRLLDIQA-PELAIVFGRTKRRV 253
Query: 65 DEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 123
DE++ AL A+E +HGD+SQ +R L F++G +LVATDVAARGLDI V +
Sbjct: 254 DELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVATDVAARGLDISGVTHVY 313
Query: 124 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED 183
++++P DPE++VHR GRTGRAGK G A+ T + + ++ER K E + PP +++
Sbjct: 314 NFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHNIERTTKRKMERMKPPTLDE 373
Query: 184 VLES----SAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQL 230
LE + E++VAT V E++ F+ A+ L+EE + +L AA ++
Sbjct: 374 ALEGQQRIAVEKLVAT---VESENLSFYKRAAEELLEEHDSVSLVAACIKM 421
>gi|89894700|ref|YP_518187.1| hypothetical protein DSY1954 [Desulfitobacterium hafniense Y51]
gi|89334148|dbj|BAE83743.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 537
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/182 (43%), Positives = 112/182 (61%), Gaps = 9/182 (4%)
Query: 52 GKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 110
G+ I+F +TKR DE+ AL + ++ALHGD+SQ QR+R + FR GK +LVATDVA
Sbjct: 254 GQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELLVATDVA 313
Query: 111 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 170
ARGLDI NV +I++++P DPE++VHR GRTGRAG++G AI + +S + R +R +ER +
Sbjct: 314 ARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLVSSREYRQLRLIERLIK 373
Query: 171 CKFEFVSPPVVEDVLESSAE----QVVATLNGVHPESVEFFTPTAQRLIEE-KGTDALAA 225
+ P + DV E AE Q+V L H + + L+EE D AA
Sbjct: 374 TRIVRKELPTLADVSERQAENLKNQLVKILQRSHLGT---YRSIVGSLLEEYDSMDVAAA 430
Query: 226 AL 227
AL
Sbjct: 431 AL 432
>gi|424835106|ref|ZP_18259776.1| DEAD-box ATP dependent DNA helicase [Clostridium sporogenes PA
3679]
gi|365978233|gb|EHN14325.1| DEAD-box ATP dependent DNA helicase [Clostridium sporogenes PA
3679]
Length = 525
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 142/262 (54%), Gaps = 8/262 (3%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TKR DE+ A+ S E +HGD+SQ+QR TL F++ LVATDVAARG
Sbjct: 250 IIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATDVAARG 309
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ N+ +I+Y++P D E++VHR GRTGRA KEGTA + T + ++R +ER + K
Sbjct: 310 IDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERIIKSKI 369
Query: 174 EFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
P +ED+LE + ++ + + E F P + L + ++AAL ++
Sbjct: 370 TKKELPTLEDILEKKYDNLLNDITSKIEENKYEKFMPMVKTLEQNFDLSEVSAALMEML- 428
Query: 233 FSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIA 292
FS+ S + + V ++L S + ++ +S++ F+ D EIG I I+
Sbjct: 429 FSKEMSFDYTNDKLEAEVPVRLFL-SVGRKDSINVKSLLTFIQDEASVRNHEIGDIDILD 487
Query: 293 DDRVQGAVFDLPEEIAKELLNK 314
+ D+ A++++NK
Sbjct: 488 ----KFTFMDVSSNTAEKIINK 505
>gi|187778617|ref|ZP_02995090.1| hypothetical protein CLOSPO_02212 [Clostridium sporogenes ATCC
15579]
gi|387819068|ref|YP_005679415.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
gi|187772242|gb|EDU36044.1| DEAD/DEAH box helicase [Clostridium sporogenes ATCC 15579]
gi|322807112|emb|CBZ04686.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
Length = 524
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 142/262 (54%), Gaps = 8/262 (3%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TKR DE+ A+ S E +HGD+SQ+QR TL F++ LVATDVAARG
Sbjct: 249 IIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATDVAARG 308
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ N+ +I+Y++P D E++VHR GRTGRA KEGTA + T + ++R +ER + K
Sbjct: 309 IDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERIIKSKI 368
Query: 174 EFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
P +ED+LE + ++ + + E F P + L + ++AAL ++
Sbjct: 369 TKKELPTLEDILEKKYDNLLNDITSKIEENKYEKFMPMVKTLEQNFDLSEVSAALMEML- 427
Query: 233 FSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIA 292
FS+ S + + V ++L S + ++ +S++ F+ D EIG I I+
Sbjct: 428 FSKEMSFDYTNDKLEAEVPVRLFL-SVGRKDSINVKSLLTFIQDEASVRNHEIGDIDILD 486
Query: 293 DDRVQGAVFDLPEEIAKELLNK 314
+ D+ A++++NK
Sbjct: 487 ----KFTFMDVSSNTAEKIINK 504
>gi|423074659|ref|ZP_17063384.1| DEAD-box ATP-dependent RNA helicase CshA [Desulfitobacterium
hafniense DP7]
gi|361854479|gb|EHL06545.1| DEAD-box ATP-dependent RNA helicase CshA [Desulfitobacterium
hafniense DP7]
Length = 537
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/182 (43%), Positives = 112/182 (61%), Gaps = 9/182 (4%)
Query: 52 GKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 110
G+ I+F +TKR DE+ AL + ++ALHGD+SQ QR+R + FR GK +LVATDVA
Sbjct: 254 GQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELLVATDVA 313
Query: 111 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 170
ARGLDI NV +I++++P DPE++VHR GRTGRAG++G AI + +S + R +R +ER +
Sbjct: 314 ARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLVSSREYRQLRLIERLIK 373
Query: 171 CKFEFVSPPVVEDVLESSAE----QVVATLNGVHPESVEFFTPTAQRLIEE-KGTDALAA 225
+ P + DV E AE Q+V L H + + L+EE D AA
Sbjct: 374 TRIVRKELPTLADVSERQAENLKNQLVKILQRSHLGT---YRSIVGSLLEEYDSMDVAAA 430
Query: 226 AL 227
AL
Sbjct: 431 AL 432
>gi|66475994|ref|XP_627813.1| nucleolar protein GU2. eIF4A-1-family. RNA SFII helicase
[Cryptosporidium parvum Iowa II]
gi|46229325|gb|EAK90174.1| nucleolar protein GU2. eIF4A-1-family. RNA SFII helicase
[Cryptosporidium parvum Iowa II]
Length = 738
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 110/178 (61%), Gaps = 2/178 (1%)
Query: 17 QDEKLAEG-IKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSI 74
+DE A I+ AI + +L D+IT+YA GK I+FT+TK+ A+E+++
Sbjct: 298 EDEAAARSRIRHLAIQCAYPQRTGLLGDIITMYAGINGKCIIFTETKQTANEIAMRSEIS 357
Query: 75 IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETF 134
+ LHGDI Q+QRE L F++G++ LVATDVAARGL I +V ++I P D +T+
Sbjct: 358 KMCQVLHGDIQQNQREIALQAFKEGRYRCLVATDVAARGLHIDDVAVVIQLAPPRDIDTY 417
Query: 135 VHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+HRSGRTGRAGK GTAI+ S + S+E+ F+ + P E++L+ +A+ +
Sbjct: 418 IHRSGRTGRAGKFGTAIMFCNMSDYPFLSSIEKASKISFQRIGVPQYEEILQKTADSI 475
>gi|390933807|ref|YP_006391312.1| DEAD/DEAH box helicase [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389569308|gb|AFK85713.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 513
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 125/225 (55%), Gaps = 9/225 (4%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
TI+F +TK++ DE++ + S E +HGD+SQ+QR TL F++G LVATDVAAR
Sbjct: 243 TIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGILDFLVATDVAAR 302
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+DI NV +I+Y LP D E++VHR GRTGRA + G A + TS + ++ +E+ CK
Sbjct: 303 GIDIENVTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYPALKRIEKATRCK 362
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 231
+ P V+D+LE +++A + + + F P A L EE +AAAL +
Sbjct: 363 IKRKELPTVDDILEVKYNKMIAEIKKTLEKNDYKRFVPLAMELDEEYNLVDVAAALMDM- 421
Query: 232 GFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSD 276
+ R+ I + + + L R F++ R+ + L+D
Sbjct: 422 -YYGEDVYRNDIERDYLRLFINLGRKDKFNK-----RTAIKLLAD 460
>gi|255326780|ref|ZP_05367856.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
gi|255295997|gb|EET75338.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
Length = 744
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 116/189 (61%), Gaps = 10/189 (5%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK++ +EV+ L + A+ A++GDI Q RERT++ R G+ +LVATDVAARG
Sbjct: 315 IVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDILVATDVAARG 374
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + L+++Y++P+D E++VHR GRTGRAG+EG AIL T ++ +R +E+ K
Sbjct: 375 LDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKYMLRQIEKATRQKV 434
Query: 174 EFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA--LAAAL 227
E + P E V E+ A+Q+ T + E + FF + E T A +AAAL
Sbjct: 435 EPMHMPTAEAVNETRKQRFAQQITET---IESEDLSFFRQIIEDYENEHDTTAEDIAAAL 491
Query: 228 AQLSGFSRP 236
A ++ RP
Sbjct: 492 AVIAQQGRP 500
>gi|170760570|ref|YP_001788120.1| DEAD/DEAH box helicase [Clostridium botulinum A3 str. Loch Maree]
gi|169407559|gb|ACA55970.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A3 str. Loch Maree]
Length = 524
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 131/239 (54%), Gaps = 4/239 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TKR DE+ A+ S E +HGD+SQ+QR TL F++ LVATDVAARG
Sbjct: 249 IIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATDVAARG 308
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ N+ +I+Y++P D E++VHR GRTGRA KEGTA + T + ++R +ER K
Sbjct: 309 IDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERITKSKI 368
Query: 174 EFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
P +ED+LE + ++ + + E F P + L + ++AAL ++
Sbjct: 369 TKKELPTLEDILEKKYDNLLNDITSKIEENKYEKFMPMVKTLEQNFDLSQVSAALMEML- 427
Query: 233 FSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHII 291
FS+ S N + V ++L S + ++ +S++ F+ D EIG I I+
Sbjct: 428 FSKEMSFDYTNNKLEAEVPVRLFL-SVGRKDSINVKSLLTFIQDEASVRNHEIGDIDIL 485
>gi|32399063|emb|CAD98303.1| DEAD/DEAH box helicase, possible [Cryptosporidium parvum]
gi|323508801|dbj|BAJ77294.1| cgd6_4860 [Cryptosporidium parvum]
Length = 688
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 110/178 (61%), Gaps = 2/178 (1%)
Query: 17 QDEKLAEG-IKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSI 74
+DE A I+ AI + +L D+IT+YA GK I+FT+TK+ A+E+++
Sbjct: 248 EDEAAARSRIRHLAIQCAYPQRTGLLGDIITMYAGINGKCIIFTETKQTANEIAMRSEIS 307
Query: 75 IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETF 134
+ LHGDI Q+QRE L F++G++ LVATDVAARGL I +V ++I P D +T+
Sbjct: 308 KMCQVLHGDIQQNQREIALQAFKEGRYRCLVATDVAARGLHIDDVAVVIQLAPPRDIDTY 367
Query: 135 VHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+HRSGRTGRAGK GTAI+ S + S+E+ F+ + P E++L+ +A+ +
Sbjct: 368 IHRSGRTGRAGKFGTAIMFCNMSDYPFLSSIEKASKISFQRIGVPQYEEILQKTADSI 425
>gi|67605637|ref|XP_666695.1| DEAD/DEAH box helicase [Cryptosporidium hominis TU502]
gi|54657739|gb|EAL36467.1| DEAD/DEAH box helicase [Cryptosporidium hominis]
Length = 678
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 110/178 (61%), Gaps = 2/178 (1%)
Query: 17 QDEKLAEG-IKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSI 74
+DE A I+ AI + +L D+IT+YA GK I+FT+TK+ A+E+++
Sbjct: 248 EDEAAARSRIRHLAIQCAYPQRTGLLGDIITMYAGINGKCIIFTETKQTANEIAMRSEIS 307
Query: 75 IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETF 134
+ LHGDI Q+QRE L F++G++ LVATDVAARGL I +V ++I P D +T+
Sbjct: 308 KMCQVLHGDIQQNQREIALQAFKEGRYRCLVATDVAARGLHIDDVAVVIQLAPPRDIDTY 367
Query: 135 VHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+HRSGRTGRAGK GTAI+ S + S+E+ F+ + P E++L+ +A+ +
Sbjct: 368 IHRSGRTGRAGKFGTAIMFCNMSDYPFLSSIEKASKISFQRIGVPQYEEILQKTADSI 425
>gi|336322978|ref|YP_004602945.1| DEAD/DEAH box helicase [Flexistipes sinusarabici DSM 4947]
gi|336106559|gb|AEI14377.1| DEAD/DEAH box helicase domain protein [Flexistipes sinusarabici DSM
4947]
Length = 527
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 107/179 (59%), Gaps = 2/179 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK D D+++ L +EALHGDISQHQRER L FR + +LVATDVAARG
Sbjct: 248 IIFCRTKVDVDKLANRLIDRGYNAEALHGDISQHQRERILKKFRNKQVNMLVATDVAARG 307
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+DI ++ +I+Y LP DPE ++HR GRTGRAGKEGTAI T + R + + R
Sbjct: 308 IDIQDLTHVINYALPQDPEAYIHRIGRTGRAGKEGTAITFVTPEEYRKLLFIMRKAKTDI 367
Query: 174 EFVSPPVVEDVLESSAEQVV-ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 231
S P V +++E+ E + L ++ + + + A+ L+E D L +AL ++
Sbjct: 368 RKESLPGVGEIIEAKKENIKEEILEALNSDELRNYKDIAEDLLENAEPDKLVSALLNIA 426
>gi|219669142|ref|YP_002459577.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
gi|219539402|gb|ACL21141.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
DCB-2]
Length = 530
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/182 (43%), Positives = 112/182 (61%), Gaps = 9/182 (4%)
Query: 52 GKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 110
G+ I+F +TKR DE+ AL + ++ALHGD+SQ QR+R + FR GK +LVATDVA
Sbjct: 247 GQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELLVATDVA 306
Query: 111 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 170
ARGLDI NV +I++++P DPE++VHR GRTGRAG++G AI + +S + R +R +ER +
Sbjct: 307 ARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLVSSREYRQLRLIERLIK 366
Query: 171 CKFEFVSPPVVEDVLESSAE----QVVATLNGVHPESVEFFTPTAQRLIEE-KGTDALAA 225
+ P + DV E AE Q+V L H + + L+EE D AA
Sbjct: 367 TRIIRKELPTLADVSERQAENLKNQLVKILQRSHLGT---YRSIVGSLLEEYDSMDVAAA 423
Query: 226 AL 227
AL
Sbjct: 424 AL 425
>gi|452851771|ref|YP_007493455.1| DEAD/DEAH box helicase domain protein [Desulfovibrio piezophilus]
gi|451895425|emb|CCH48304.1| DEAD/DEAH box helicase domain protein [Desulfovibrio piezophilus]
Length = 581
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 111/175 (63%), Gaps = 2/175 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VFT+T+ DAD V+ L +E +HG+ISQ++RE LN FR+ + T+LVATDVAARG
Sbjct: 275 LVFTRTRADADTVAERLNERGYPAEPIHGEISQNRREDILNRFRRRRATILVATDVAARG 334
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+P++ ++++ LP DP TFVHR+GRTGRAGKEG AI + T ++ R + + + G +
Sbjct: 335 IDVPDLTHVVNFALPQDPPTFVHRTGRTGRAGKEGIAITLITPNEFRRLMYITKSSGIEI 394
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPESVE-FFTPTAQRLIEEKGTDALAAAL 227
P ++DV+ S ++V L + E + P A+ L+ E+ + AAL
Sbjct: 395 SKEKLPRIQDVIYSKKSRMVTKLESIMAEDDHSAYQPMAKELMSEQDPAEIIAAL 449
>gi|312112527|ref|YP_003990843.1| DEAD/DEAH box helicase [Geobacillus sp. Y4.1MC1]
gi|336236996|ref|YP_004589612.1| DEAD/DEAH box helicase [Geobacillus thermoglucosidasius C56-YS93]
gi|311217628|gb|ADP76232.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y4.1MC1]
gi|335363851|gb|AEH49531.1| DEAD/DEAH box helicase domain protein [Geobacillus
thermoglucosidasius C56-YS93]
Length = 465
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 126/217 (58%), Gaps = 9/217 (4%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 77
E I+ Y + K IL+ L+ + A IVF +TKR DE++ AL A+
Sbjct: 209 EMTVPNIQQYYLEVQEKKKFDILTRLLDIQAPE-LAIVFGRTKRRVDELAEALNLRGYAA 267
Query: 78 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
E +HGD+SQ +R L F++G +LVATDVAARGLDI V + ++++P DPE++VHR
Sbjct: 268 EGIHGDLSQAKRLSVLRKFKEGSIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHR 327
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES----SAEQVV 193
GRTGRAGK G A+ T + + ++ER K E + PP +++ LE + E+++
Sbjct: 328 IGRTGRAGKTGVAMTFVTPREIGQLHNIERTTKRKMERMKPPTLDEALEGQQRIAVEKLI 387
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQL 230
AT V E++ F+ A+ L+EE + +L AA ++
Sbjct: 388 AT---VETENLSFYKRAAEELLEEHDSVSLVAACIKM 421
>gi|423721477|ref|ZP_17695659.1| DEAD/DEAH box helicase family protein [Geobacillus
thermoglucosidans TNO-09.020]
gi|383365528|gb|EID42823.1| DEAD/DEAH box helicase family protein [Geobacillus
thermoglucosidans TNO-09.020]
Length = 465
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 126/217 (58%), Gaps = 9/217 (4%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 77
E I+ Y + K IL+ L+ + A IVF +TKR DE++ AL A+
Sbjct: 209 EMTVPNIQQYYLEVQEKKKFDILTRLLDIQAPE-LAIVFGRTKRRVDELAEALNLRGYAA 267
Query: 78 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
E +HGD+SQ +R L F++G +LVATDVAARGLDI V + ++++P DPE++VHR
Sbjct: 268 EGIHGDLSQAKRLSVLRKFKEGSIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHR 327
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES----SAEQVV 193
GRTGRAGK G A+ T + + ++ER K E + PP +++ LE + E+++
Sbjct: 328 IGRTGRAGKTGVAMTFVTPREIGQLHNIERTTKRKMERMKPPTLDEALEGQQRIAVEKLI 387
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQL 230
AT V E++ F+ A+ L+EE + +L AA ++
Sbjct: 388 AT---VETENLSFYKRAAEELLEEHDSVSLVAACIKM 421
>gi|209882562|ref|XP_002142717.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
gi|209558323|gb|EEA08368.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
Length = 667
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 108/175 (61%), Gaps = 1/175 (0%)
Query: 25 IKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 83
I+ AI + +L D+IT+YA GK I+FT+TK+ A+E+S+ T + LHGD
Sbjct: 256 IRHLAIQCAYPQRTALLKDIITMYAGIHGKCIIFTETKQTANEISMRSTISDMCQVLHGD 315
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
I Q QRE L F++G++ LVATDVAARGL I +V ++I P D +T++HR+GRTGR
Sbjct: 316 IQQSQREIALQAFKEGRYRCLVATDVAARGLHIDDVAVVIQLAPPRDIDTYIHRAGRTGR 375
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG 198
AGK GTAIL + + ++E+ F+ + P E++L+ +A+ V L G
Sbjct: 376 AGKFGTAILFCNMNDYPFLLNIEKIGNINFQRIGAPQFEEILQKTADSVGEYLVG 430
>gi|333895980|ref|YP_004469854.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333111245|gb|AEF16182.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 513
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 107/179 (59%), Gaps = 2/179 (1%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
TI+F +TK++ DE++ + S E +HGD+SQ+QR TL F++G LVATDVAAR
Sbjct: 243 TIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGILDFLVATDVAAR 302
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+DI NV +I+Y LP D E++VHR GRTGRA + G A + TS + ++ +E+ CK
Sbjct: 303 GIDIENVTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYPALKRIEKATRCK 362
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQL 230
+ P V+D+LE +++A + + + F P A L EE +AAAL +
Sbjct: 363 IKRKELPTVDDILEVKYNKMIAEIKKTLEKNDYKRFVPLAMELDEEYNLVDVAAALMDM 421
>gi|392394099|ref|YP_006430701.1| DNA/RNA helicase [Desulfitobacterium dehalogenans ATCC 51507]
gi|390525177|gb|AFM00908.1| DNA/RNA helicase, superfamily II [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 530
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/142 (47%), Positives = 97/142 (68%), Gaps = 1/142 (0%)
Query: 52 GKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 110
G+ I+F +TKR DE+ AL + ++ALHGD+SQ QR+R + FR GK +LVATDVA
Sbjct: 247 GQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELLVATDVA 306
Query: 111 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 170
ARGLDI NV +I++++P DPE++VHR GRTGRAG++G AI + +S + R +R +ER +
Sbjct: 307 ARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLISSREYRQLRLIERLIK 366
Query: 171 CKFEFVSPPVVEDVLESSAEQV 192
+ P + DV E AE +
Sbjct: 367 TRIVRKELPTLADVSERQAENL 388
>gi|164687595|ref|ZP_02211623.1| hypothetical protein CLOBAR_01236 [Clostridium bartlettii DSM
16795]
gi|164603369|gb|EDQ96834.1| DEAD/DEAH box helicase [Clostridium bartlettii DSM 16795]
Length = 541
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 131/239 (54%), Gaps = 11/239 (4%)
Query: 1 MLNYFVMFSHSTQVGN--QDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFT 58
+L ++ H ++ + E IK + I T +K +L LI VY ++VF
Sbjct: 192 ILELTKLYQHEPEIIKVVRKELTVPNIKQFYIETRRANKLEVLCRLIDVY-NPKLSVVFC 250
Query: 59 QTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 117
TKR +DE+ L + ++ALHGD+ Q QR+ ++ FRQG +LVATDVAARG+D+
Sbjct: 251 NTKRGSDELVSELQARGYFADALHGDLKQTQRDIVMDKFRQGTIDILVATDVAARGIDVD 310
Query: 118 NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 177
+VD++ +Y+LP D E +VHR GRTGRAG+EG + + R +R +ER CK S
Sbjct: 311 DVDMVFNYDLPQDEEYYVHRIGRTGRAGREGVSFSFVYGKEMRKMRDIERYTKCKLVKHS 370
Query: 178 PPVVEDVLESSA----EQVVATLNGVH-PESVEFFTPTAQRLIEEKGTDALAAALAQLS 231
P + DV E +QV T+N + + + + + +E T +AAAL +L+
Sbjct: 371 IPTIADVEEKKVAAFFKQVKDTVNESNLAKQINWVEALCEE--QELSTLEVAAALVKLA 427
>gi|311740664|ref|ZP_07714491.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311304184|gb|EFQ80260.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 619
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 115/180 (63%), Gaps = 4/180 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK + +EV+ L ++ A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 298 IVFCRTKHETEEVAETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 357
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + ++++++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER +
Sbjct: 358 LDVERITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERVTNARL 417
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEK--GTDALAAALAQL 230
E + P V++V E E+ ++ N + + +FF ++ E+ D +AAALA +
Sbjct: 418 EEMDLPSVDEVNEKRKEKFAQSITNSMDNKQADFFRTLVRKYSEDNNAAMDDIAAALAVM 477
>gi|431794108|ref|YP_007221013.1| DNA/RNA helicase [Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430784334|gb|AGA69617.1| DNA/RNA helicase, superfamily II [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 531
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 112/182 (61%), Gaps = 9/182 (4%)
Query: 52 GKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 110
G+ I+F +TKR DE+ AL + ++ALHGD+SQ QR+R + FR GK +LVATDVA
Sbjct: 247 GQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELLVATDVA 306
Query: 111 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 170
ARGLDI NV +I++++P DPE++VHR GRTGRAG++G AI + +S + R +R +ER +
Sbjct: 307 ARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLVSSREYRQLRLIERLIK 366
Query: 171 CKFEFVSPPVVEDVLESSAE----QVVATLNGVHPESVEFFTPTAQRLIEE-KGTDALAA 225
+ P + DV E AE Q+V + H + + L+EE D AA
Sbjct: 367 TRIVRKELPTLADVSERQAENLKNQLVKIIQRSHLGT---YRSIVGSLLEEYDSVDVAAA 423
Query: 226 AL 227
AL
Sbjct: 424 AL 425
>gi|237755972|ref|ZP_04584559.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237691876|gb|EEP60897.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 405
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 108/174 (62%), Gaps = 2/174 (1%)
Query: 5 FVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDA 64
F+ ++ T DE E IK K L+++++ + K I+FTQTK +A
Sbjct: 201 FLNENYETIKVKPDEVTVEKIKQIIYRVNPRDKFKKLTEVLS-QNEAEKVIIFTQTKIEA 259
Query: 65 DEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 123
DE++ L + A+HGD SQ +RE L+ FR GK +LVATDVAARGLDI VDL+I
Sbjct: 260 DELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKILVATDVAARGLDIKGVDLVI 319
Query: 124 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 177
+Y LP D E+++HR GRTGRAG+EGTAI + TSS+ + ++++++ E ++
Sbjct: 320 NYGLPRDAESYIHRIGRTGRAGREGTAISIMTSSEDKQLQNIQKKTKANIEVIN 373
>gi|255324480|ref|ZP_05365597.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
SK141]
gi|255298386|gb|EET77686.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
SK141]
Length = 619
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 115/180 (63%), Gaps = 4/180 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK + +EV+ L ++ A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 298 IVFCRTKHETEEVAETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 357
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + ++++++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER +
Sbjct: 358 LDVERITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERVTNARL 417
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEK--GTDALAAALAQL 230
E + P V++V E E+ ++ N + + +FF ++ E+ D +AAALA +
Sbjct: 418 EEMDLPSVDEVNEKRKEKFAQSITNSMDNKQADFFRTLVRKYSEDNNAAMDDIAAALAVM 477
>gi|343087345|ref|YP_004776640.1| DEAD/DEAH box helicase [Cyclobacterium marinum DSM 745]
gi|342355879|gb|AEL28409.1| DEAD/DEAH box helicase domain protein [Cyclobacterium marinum DSM
745]
Length = 565
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 116/181 (64%), Gaps = 14/181 (7%)
Query: 37 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNG 95
K ++S LI ++ + +++F TKR DEV+ LT+ I +EALHGD+SQ QR + +N
Sbjct: 231 KTDLISRLINLH-QYKLSVIFCNTKRVTDEVTEELTAKGIPAEALHGDLSQAQRTKVMNK 289
Query: 96 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 155
FR+G +VLVATDVAARG+D+ NV+ + +Y+LP D E +VHR GRTGRAG+ GTAI F
Sbjct: 290 FRKGHCSVLVATDVAARGIDVENVEAVFNYDLPLDEENYVHRIGRTGRAGRSGTAI-SFV 348
Query: 156 SSQRRT--VRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL---------NGVHPESV 204
S +R + +R LER + E +PP V+ +++ +Q+ + N ++ ++V
Sbjct: 349 SGRRDSGRLRDLERFIKTTIEKAAPPSVDQLIQMKKDQLTKDIHRQLAKEEDNSIYEQAV 408
Query: 205 E 205
E
Sbjct: 409 E 409
>gi|375007039|ref|YP_004980670.1| DEAD-box ATP-dependent RNA helicase cshA [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|359285886|gb|AEV17570.1| DEAD-box ATP-dependent RNA helicase cshA [Geobacillus
thermoleovorans CCB_US3_UF5]
Length = 467
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 123/223 (55%), Gaps = 5/223 (2%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 77
E I+ Y + K IL+ L+ + A IVF +TKR DE++ AL A+
Sbjct: 209 EMTVPNIQQYYLEVHEKKKFDILTRLLDIQAPE-LAIVFGRTKRRVDELAEALNLRGYAA 267
Query: 78 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
E +HGD+SQ +R L F++G +LVATDVAARGLDI V + ++++P DPE++VHR
Sbjct: 268 EGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHR 327
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV-ATL 196
GRTGRAGK G A+ T + + +ER K E + PP +++ LE + L
Sbjct: 328 IGRTGRAGKTGVAMTFVTPREIGQLHHIERTTKRKMERMKPPTLDEALEGQQRIAIEKLL 387
Query: 197 NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
N V E++ F+ A+ L+EE D++ A L +R P +
Sbjct: 388 NVVETENLSFYKRAAEELLEEH--DSVTIVAACLKMLTREPDT 428
>gi|261418549|ref|YP_003252231.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC61]
gi|297528577|ref|YP_003669852.1| DEAD/DEAH box helicase [Geobacillus sp. C56-T3]
gi|319765363|ref|YP_004130864.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC52]
gi|448236523|ref|YP_007400581.1| DEAD-box ATP-dependent RNA helicase [Geobacillus sp. GHH01]
gi|261375006|gb|ACX77749.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC61]
gi|297251829|gb|ADI25275.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. C56-T3]
gi|317110229|gb|ADU92721.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC52]
gi|445205365|gb|AGE20830.1| DEAD-box ATP-dependent RNA helicase [Geobacillus sp. GHH01]
Length = 467
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 123/223 (55%), Gaps = 5/223 (2%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 77
E I+ Y + K IL+ L+ + A IVF +TKR DE++ AL A+
Sbjct: 209 EMTVPNIQQYYLEVHEKKKFDILTRLLDIQAPE-LAIVFGRTKRRVDELAEALNLRGYAA 267
Query: 78 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
E +HGD+SQ +R L F++G +LVATDVAARGLDI V + ++++P DPE++VHR
Sbjct: 268 EGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHR 327
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV-ATL 196
GRTGRAGK G A+ T + + +ER K E + PP +++ LE + L
Sbjct: 328 IGRTGRAGKTGVAMTFVTPREIGQLHHIERTTKRKMERMKPPTLDEALEGQQRIAIEKLL 387
Query: 197 NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
N V E++ F+ A+ L+EE D++ A L +R P +
Sbjct: 388 NVVETENLSFYKRAAEELLEEH--DSVTIVAACLKMLTREPDT 428
>gi|333911306|ref|YP_004485039.1| DEAD/DEAH box helicase [Methanotorris igneus Kol 5]
gi|333751895|gb|AEF96974.1| DEAD/DEAH box helicase domain protein [Methanotorris igneus Kol 5]
Length = 434
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 111/176 (63%), Gaps = 3/176 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VF +T+ D +EV+ L ++ALHGDI+Q QRER LN F++ + +LVATDVAARG
Sbjct: 246 LVFCKTRADVNEVANKLIEKGYEADALHGDIAQKQRERILNRFKKKRINILVATDVAARG 305
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+DI N+ +I+Y LP +PE++VHR GRTGRAGK+GTAI T ++ R ++ +++
Sbjct: 306 IDINNLTHVINYSLPQNPESYVHRIGRTGRAGKKGTAISFVTPNEYRKLKYIKKIAKVNI 365
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTD-ALAAAL 227
P ++DV+ + +++ + + E + + +Q LI E G + ALAA L
Sbjct: 366 RKEKLPEIDDVINAKKSKILNNIVEIIKSEDYQEYVEISQELINEFGAERALAALL 421
>gi|56418761|ref|YP_146079.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
gi|81675946|sp|Q5L3G9.1|CSHA_GEOKA RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|56378603|dbj|BAD74511.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
Length = 467
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 123/223 (55%), Gaps = 5/223 (2%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 77
E I+ Y + K IL+ L+ + A IVF +TKR DE++ AL A+
Sbjct: 209 EMTVPNIQQYYLEVHEKKKFDILTRLLDIQAPE-LAIVFGRTKRRVDELAEALNLRGYAA 267
Query: 78 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
E +HGD+SQ +R L F++G +LVATDVAARGLDI V + ++++P DPE++VHR
Sbjct: 268 EGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHR 327
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV-ATL 196
GRTGRAGK G A+ T + + +ER K E + PP +++ LE + L
Sbjct: 328 IGRTGRAGKTGVAMTFVTPREIGQLHHIERTTKRKMERMKPPTLDEALEGQQRIAIEKLL 387
Query: 197 NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
N V E++ F+ A+ L+EE D++ A L +R P +
Sbjct: 388 NVVETENLSFYKRAAEELLEEH--DSVTIVAACLKMLTREPDT 428
>gi|227501650|ref|ZP_03931699.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
gi|306835824|ref|ZP_07468821.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
gi|227077675|gb|EEI15638.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
gi|304568298|gb|EFM43866.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
Length = 623
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 114/180 (63%), Gaps = 4/180 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK + +EV+ AL ++ A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 298 IVFCRTKHETEEVAEALRDRGYSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 357
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + ++++++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER +
Sbjct: 358 LDVERITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERVTNARL 417
Query: 174 EFVSPPVVEDVLESSAEQVV-ATLNGVHPESVEFFTPTAQRLIEEKGT--DALAAALAQL 230
E + P V++V E E+ A + + +FF ++ E+ D +AAALA +
Sbjct: 418 EEMDLPSVDEVNEKRKEKFAQAITQSMDNKQADFFRNLVRKYSEDNNVAMDDIAAALAVM 477
>gi|317152644|ref|YP_004120692.1| DEAD/DEAH box helicase [Desulfovibrio aespoeensis Aspo-2]
gi|316942895|gb|ADU61946.1| DEAD/DEAH box helicase domain protein [Desulfovibrio aespoeensis
Aspo-2]
Length = 551
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 111/177 (62%), Gaps = 2/177 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VFT+T+ DAD V+ LT +E +HGD+SQ +RE L F++ T+LVATDVAARG
Sbjct: 245 LVFTRTRADADRVASRLTERGYPAEPIHGDLSQARREEILGRFKKRLVTILVATDVAARG 304
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+P++ ++++ LP DP+TFVHR+GRTGRAGKEG AI + S+ R + + + G
Sbjct: 305 IDVPDLTHVVNFALPQDPQTFVHRTGRTGRAGKEGVAISLIAPSEFRRLMFITKSSGIDI 364
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPESVEF-FTPTAQRLIEEKGTDALAAALAQ 229
P + DV+ S ++V L+G+ E + P A+ L+E + + + AAL +
Sbjct: 365 TKAKLPCIHDVIYSKKSRMVDGLDGIIQEEAHTPYLPMARDLLEGREPEDVVAALLK 421
>gi|258597452|ref|XP_001350429.2| ATP-dependent RNA Helicase, putative [Plasmodium falciparum 3D7]
gi|254945351|gb|AAN36109.2| ATP-dependent RNA Helicase, putative [Plasmodium falciparum 3D7]
Length = 841
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 117/213 (54%), Gaps = 5/213 (2%)
Query: 50 KGGKTIVFTQTKRDADEVSLALTSIIASEA--LHGDISQHQRERTLNGFRQGKFTVLVAT 107
K K I+F TK + ++ L S++ A +H ++ Q+ +N F+ GK VL+ T
Sbjct: 505 KINKCIIFANTKEEVEK--LYEISLLKPHAVMMHSELLTIQKNENINLFKVGKKNVLITT 562
Query: 108 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 167
D+ +RGLDI NV I++Y P P ++HRSGRTGR ++G + M+ + R V + +
Sbjct: 563 DIISRGLDIDNVIFILNYSPPTSPNDYIHRSGRTGRGKEKGICLTMYHKYEYRNVDKIMK 622
Query: 168 DVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAAL 227
KFE + P VEDV + S +++V + + PE EFF ++ L+++ T +A L
Sbjct: 623 YTKNKFEVILCPKVEDVYKFSVDKLVENVMKIAPEKYEFFNEKSKELLKKHNTKIIAQIL 682
Query: 228 AQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAF 260
+ L F + SL++ ++ +V + L +D F
Sbjct: 683 SILLKFDKKSFDVSLLSGKKNYVAV-LIKDPFF 714
>gi|428186513|gb|EKX55363.1| hypothetical protein GUITHDRAFT_83766 [Guillardia theta CCMP2712]
Length = 650
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 149/265 (56%), Gaps = 23/265 (8%)
Query: 13 QVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT 72
+V ++E+ GI AI A S+ +++DL+ + + + IVF TK +A E++ LT
Sbjct: 357 KVAKEEEEETSGISHVAIRAAAGSRAEVITDLL-LTSGPRRAIVFANTKLEAVELANELT 415
Query: 73 SIIAS---EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP- 128
S + LHGD+ Q QR R + R+G +VLVATDVA+RG+D+ ++DL++ +P
Sbjct: 416 KSSTSTNVDVLHGDLPQFQRNRVMRMLREGDVSVLVATDVASRGIDVADLDLVVQCGVPL 475
Query: 129 ----------------NDPETFVHRSGRTGRAGKEGTAILMF--TSSQRRTVRSLERDVG 170
+ E FVHRSGRTGR G+ GT++L++ T+ + + V++LER
Sbjct: 476 SASGAMRRKTKTLAEVVNTEVFVHRSGRTGRMGRSGTSVLLWDPTAGEEKLVQALERSAK 535
Query: 171 CKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQL 230
KF++ P E+ + + + + + V V F A+ L E G ALA ALA +
Sbjct: 536 VKFDYRDAPGPEEKMSAMSRRTRRRMEEVDEAVVRLFMKEAESLYESSGLSALARALALV 595
Query: 231 SGFSRPPSSRSLINHEQGWVTLQLT 255
+G + PPS RSL+++ + ++T++ T
Sbjct: 596 NGVTSPPSPRSLLDNRRDFLTVKAT 620
>gi|162453584|ref|YP_001615951.1| hypothetical protein sce5308 [Sorangium cellulosum So ce56]
gi|161164166|emb|CAN95471.1| deaD3 [Sorangium cellulosum So ce56]
Length = 632
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 99/159 (62%), Gaps = 1/159 (0%)
Query: 45 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 103
+ + A G +T+VF +T+ A E++ LT++ + + AL GD+ Q +R RTL+ FR G T
Sbjct: 251 LLLLAPGERTLVFVRTREGAAELADKLTALGLPARALSGDLEQRERTRTLDAFRSGAITT 310
Query: 104 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 163
LVATDVAARG+D+P V +IH + P DPE F HRSGRTGRAG++GT++L+ R
Sbjct: 311 LVATDVAARGIDVPEVGRVIHADPPGDPEIFTHRSGRTGRAGRKGTSVLLVAPFAREHAL 370
Query: 164 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 202
L R + F P +DVL ++ E++ A L V E
Sbjct: 371 RLLRRARVEATFRPAPSPDDVLRAADERLAAELAAVRLE 409
>gi|188996905|ref|YP_001931156.1| DEAD/DEAH box helicase domain-containing protein
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188931972|gb|ACD66602.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 405
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 102/161 (63%), Gaps = 2/161 (1%)
Query: 18 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IA 76
DE E IK K L+++++ + K I+FTQTK +ADE++ L
Sbjct: 214 DEVTVEKIKQIIYRVNPRDKFKKLTEVLS-QNEAEKVIIFTQTKIEADELAERLNEEGFN 272
Query: 77 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 136
+ A+HGD SQ +RE L+ FR GK +LVATDVAARGLDI VDL+I+Y LP D E+++H
Sbjct: 273 ASAIHGDFSQKKRETVLHNFRTGKLKILVATDVAARGLDIKGVDLVINYGLPRDAESYIH 332
Query: 137 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 177
R GRTGRAG+EGTAI + T S+ + ++++++ E ++
Sbjct: 333 RIGRTGRAGREGTAISIMTPSEDKQLQNIQKKTKANIEVIN 373
>gi|300856701|ref|YP_003781685.1| RNA helicase [Clostridium ljungdahlii DSM 13528]
gi|300436816|gb|ADK16583.1| predicted RNA helicase [Clostridium ljungdahlii DSM 13528]
Length = 525
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 141/270 (52%), Gaps = 23/270 (8%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TKR DE+ L + E +HGD+ Q+QR TL F++G LVATDVAARG
Sbjct: 247 IIFCKTKRGVDELVEGLQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLEFLVATDVAARG 306
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ NV +I+Y+LP D E++VHR GRTGRA KEG A + T + ++ +E+ K
Sbjct: 307 IDVENVSHVINYDLPQDTESYVHRIGRTGRANKEGIAYSLVTPREYILLKQIEKFTKSKI 366
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
P V+D+ E+ + + + + E + + F P A L EE +AAAL ++
Sbjct: 367 RRKEIPTVDDIYEAKYKNIEEQVKSIISEDNYKNFIPIATELDEEYNLVDVAAALMKII- 425
Query: 233 FSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSA--------RSVMGFLSDVYPTAADE 284
F + S ++++ LT D R F+S R ++ F+S+ A E
Sbjct: 426 FDKELS----FDYKEN----SLTVDEKDVRLFLSIGRMDNLTPRKLLKFISETSSVEAYE 477
Query: 285 IGKIHIIADDRVQGAVFDLPEEIAKELLNK 314
IG I I+ + ++PE ++ +L K
Sbjct: 478 IGDIDILN----KFTFINVPERVSSIILKK 503
>gi|311747453|ref|ZP_07721238.1| ATP-dependent RNA helicase, DEAD/DEAH family [Algoriphagus sp. PR1]
gi|126574812|gb|EAZ79183.1| ATP-dependent RNA helicase, DEAD/DEAH family [Algoriphagus sp. PR1]
Length = 580
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/184 (44%), Positives = 111/184 (60%), Gaps = 7/184 (3%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
++VF TKR DE + AL S I +EALHGD+SQ QR++ +N FR+G TVLVATDVAAR
Sbjct: 247 SVVFCNTKRMTDEATEALGSRGILAEALHGDLSQAQRDKVMNKFRKGLCTVLVATDVAAR 306
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR--TVRSLERDVG 170
G+D+ NV+ + +++LP D E++VHR GRTGRAGK G AI F + +R +R LER
Sbjct: 307 GIDVDNVEAVFNFDLPLDDESYVHRIGRTGRAGKSGKAI-NFVTGRRDFGKIRDLERFTK 365
Query: 171 CKFEFVSPPVVEDVLESSAEQVVATLNGV--HPESVEFFTPTA-QRLIEEKGTDALAAAL 227
+ PP V D++E Q V ++ V E + F T Q L E + +A L
Sbjct: 366 ASIAKMDPPSVSDLIELKKAQFVKDVHTVISKEEDNQIFEETVGQLLTEGLSIEQIALGL 425
Query: 228 AQLS 231
+L
Sbjct: 426 MKLQ 429
>gi|196250549|ref|ZP_03149239.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
gi|196209898|gb|EDY04667.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
Length = 467
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 121/223 (54%), Gaps = 5/223 (2%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 77
E I+ Y + K IL+ L+ + A IVF +TKR DE++ AL A+
Sbjct: 209 EMTVPNIQQYYLEVHEKKKFDILTRLLDIQAPE-LAIVFGRTKRRVDELAEALNLRGYAA 267
Query: 78 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
E +HGD+SQ +R L F++G +LVATDVAARGLDI V + ++++P DPE++VHR
Sbjct: 268 EGIHGDLSQAKRLSVLRKFKEGSIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHR 327
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV-ATL 196
GRTGRAGK G A+ T + + +ER K E + PP + + LE + L
Sbjct: 328 IGRTGRAGKTGVAMTFVTPREIGQLHHIERTTKRKMERMKPPTLNEALEGQQRIAIEKLL 387
Query: 197 NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
N E++ F+ A+ L+EE D++ A L +R P +
Sbjct: 388 NVAEAENLSFYKRAAEELLEEH--DSVTIVAACLKMLTREPDT 428
>gi|375092115|ref|ZP_09738400.1| hypothetical protein HMPREF9709_01262 [Helcococcus kunzii ATCC
51366]
gi|374561881|gb|EHR33218.1| hypothetical protein HMPREF9709_01262 [Helcococcus kunzii ATCC
51366]
Length = 540
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 102/177 (57%), Gaps = 2/177 (1%)
Query: 17 QDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-I 75
Q E E IK Y + + K+ IL+ L+ +Y +IVF TKR D++ LT +
Sbjct: 206 QKELTVEKIKQYYLEMDSKMKKEILNRLLGMY-NPNLSIVFCNTKRMVDQLVTDLTKLGY 264
Query: 76 ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 135
+ALHGD+ Q QR+ + FR +L+ATD+AARGLD+ NVDL+++Y+LP + +V
Sbjct: 265 NVDALHGDMKQSQRDNVMKRFRASTIEILIATDIAARGLDVENVDLVVNYDLPQQNDYYV 324
Query: 136 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
HR GRT RAGK+G + TS R + +ER K E + P + DV +S Q+
Sbjct: 325 HRIGRTARAGKKGISFTFVTSRDRNKLGEIERYTNSKMEKMELPTIYDVRNNSRNQL 381
>gi|227825056|ref|ZP_03989888.1| DEAD/DEAH helicase [Acidaminococcus sp. D21]
gi|226905555|gb|EEH91473.1| DEAD/DEAH helicase [Acidaminococcus sp. D21]
Length = 532
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 108/176 (61%), Gaps = 2/176 (1%)
Query: 53 KTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111
K I+F +TK+ DE+ +AL T +E LHGD+SQ QR+R + FRQ + +LVATDVAA
Sbjct: 245 KMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQTQRDRVMKKFRQDQVDILVATDVAA 304
Query: 112 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 171
RG+DI N+ ++++++P DPE++VHR GRTGRAG G A+ T + R ++ +ER V
Sbjct: 305 RGIDIDNITHVVNFDVPQDPESYVHRIGRTGRAGNTGVALTFITPREFRQLKLIERSVKT 364
Query: 172 KFEFVSPPVVEDVLESSAEQVVATLNGVHPES-VEFFTPTAQRLIEEKGTDALAAA 226
K P +VLE EQ+++ + + ++ + P A+ L + +AAA
Sbjct: 365 KIIRGQLPTDANVLEKQREQIISKMQSILEQNQYHDYLPIAEALENDYDIHDIAAA 420
>gi|138893877|ref|YP_001124330.1| DEAD/DEAH box helicase [Geobacillus thermodenitrificans NG80-2]
gi|134265390|gb|ABO65585.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Geobacillus
thermodenitrificans NG80-2]
Length = 467
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 121/223 (54%), Gaps = 5/223 (2%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 77
E I+ Y + K IL+ L+ + A IVF +TKR DE++ AL A+
Sbjct: 209 EMTVPNIQQYYLEVHEKKKFDILTRLLDIQAPE-LAIVFGRTKRRVDELAEALNLRGYAA 267
Query: 78 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
E +HGD+SQ +R L F++G +LVATDVAARGLDI V + ++++P DPE++VHR
Sbjct: 268 EGIHGDLSQAKRLSVLRKFKEGSIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHR 327
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV-ATL 196
GRTGRAGK G A+ T + + +ER K E + PP + + LE + L
Sbjct: 328 IGRTGRAGKTGVAMTFVTPREIGQLHHIERTTKRKMERMKPPTLNEALEGQQRIAIEKLL 387
Query: 197 NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
N E++ F+ A+ L+EE D++ A L +R P +
Sbjct: 388 NVAEAENLSFYKRAAEELLEEH--DSVTIVAACLKMLTREPDT 428
>gi|402828050|ref|ZP_10876941.1| putative ATP-dependent RNA helicase RhlE [Slackia sp. CM382]
gi|402286651|gb|EJU35113.1| putative ATP-dependent RNA helicase RhlE [Slackia sp. CM382]
Length = 721
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 104/172 (60%), Gaps = 4/172 (2%)
Query: 21 LAEGIKLYAISTTATSKRTILSDLITVYAKGG-KTIVFTQTKRDADEVSLALTSI-IASE 78
+A+ I Y I T K +L+ V +GG + IVFT+TK AD + L I IA+E
Sbjct: 235 VADLIDQYVIKTDRRLKPALLNSF--VRERGGFRVIVFTRTKGGADNCTKRLRKIGIATE 292
Query: 79 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS 138
A+H D SQ QR R L+ FR+GK VLVATDV +RG+D+P VD +I+Y+LP PE +VHR
Sbjct: 293 AIHADRSQAQRARALDNFREGKTHVLVATDVLSRGIDVPEVDYVINYDLPMMPEDYVHRI 352
Query: 139 GRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE 190
GRTGRAG G A+ T R ++S+++ + E + V +D +E E
Sbjct: 353 GRTGRAGARGYAVSFVTPDTRNLLKSIQKFIDQTIEVLDFAVSDDAMEPVGE 404
>gi|269217166|ref|ZP_06161020.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC
700122]
gi|269129303|gb|EEZ60388.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC
700122]
Length = 721
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 104/172 (60%), Gaps = 4/172 (2%)
Query: 21 LAEGIKLYAISTTATSKRTILSDLITVYAKGG-KTIVFTQTKRDADEVSLALTSI-IASE 78
+A+ I Y I T K +L+ V +GG + IVFT+TK AD + L I IA+E
Sbjct: 235 VADLIDQYVIKTDRRLKPALLNSF--VRERGGFRVIVFTRTKGGADNCTKRLRKIGIATE 292
Query: 79 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS 138
A+H D SQ QR R L+ FR+GK VLVATDV +RG+D+P VD +I+Y+LP PE +VHR
Sbjct: 293 AIHADRSQAQRARALDNFREGKTHVLVATDVLSRGIDVPEVDYVINYDLPMMPEDYVHRI 352
Query: 139 GRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE 190
GRTGRAG G A+ T R ++S+++ + E + V +D +E E
Sbjct: 353 GRTGRAGARGYAVSFVTPDTRNLLKSIQKFIDQTIEVLDFAVSDDAMEPVGE 404
>gi|403387074|ref|ZP_10929131.1| ATP-dependent RNA helicase (superfamily II) [Clostridium sp. JC122]
Length = 546
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 89/267 (33%), Positives = 138/267 (51%), Gaps = 37/267 (13%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TKR DE+ AL S E +HGD+ Q QR TL F+ G L+ATDVAARG
Sbjct: 247 ILFCKTKRGVDELVSALQSKGYIVEGMHGDMKQLQRLNTLKKFKTGNLNYLIATDVAARG 306
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ ++ +I+Y+LP D E++VHR GRTGRA KEGTA + + +R +E K
Sbjct: 307 IDVEDITHVINYDLPQDTESYVHRIGRTGRANKEGTAYSFASRREMSMIRQIENVTKSKM 366
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
E P + D+ S +E ++ ++ E S E F T++ LI+E G + + A+L ++
Sbjct: 367 EKKQLPTLNDIYASKSESILESVKATLEENSYESFIQTSKDLIDEFGAEDVTASLMKIL- 425
Query: 233 FSRPPSSRSLINHEQGWVTLQ----LTRDSA--------FSRGF---------------- 264
F + +N+E TL+ +RDS F+R F
Sbjct: 426 FDKE------LNYEYTQDTLKCEESFSRDSNRRDSNRRDFNRDFNKDTARLFLSVGRLDK 479
Query: 265 MSARSVMGFLSDVYPTAADEIGKIHII 291
+SA ++ FL + + E+G+I I+
Sbjct: 480 VSAIDLVKFLDNTAGVKSKELGRIDIL 506
>gi|452910044|ref|ZP_21958727.1| Cold-shock DEAD-box protein A [Kocuria palustris PEL]
gi|452835004|gb|EME37802.1| Cold-shock DEAD-box protein A [Kocuria palustris PEL]
Length = 606
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 124/396 (31%), Positives = 185/396 (46%), Gaps = 47/396 (11%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 80
A I+ + K ++ L+ V G IVF +TK +EV+ L + A+ A+
Sbjct: 232 ATNIRQRYLQVMGAHKLEAMTRLLEVEEHDG-IIVFVRTKAATEEVAEKLRARGHAATAI 290
Query: 81 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 140
+GDI Q RE+++ R GK +LVATDVAARGLD+ + L+++Y++P+D E++VHR GR
Sbjct: 291 NGDIPQQAREKSVEQLRSGKIDILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGR 350
Query: 141 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGV 199
TGRAG+ G AIL T ++ +R++E+ E + P VEDV + +Q ++ + +
Sbjct: 351 TGRAGRSGDAILFMTPREKYLLRAIEKTTRQPVEQMPMPSVEDVNRTRVDQFGQSITDTI 410
Query: 200 HPESVEFFTPTAQRLIEEKGTDAL--AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRD 257
+ + F +E+ D L AAALA +S +P ++ L ++ + R
Sbjct: 411 ETQDLSAFREMVTAYVEDHDVDPLEVAAALAVISQGDQPFFAQELPEPKRK----ERDRG 466
Query: 258 SAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 317
RG + RS G Y A +G H LP I L N+
Sbjct: 467 ERSERGGRTPRSEEG--KATYWMA---VGHKH-----------RALPGSIVGALTNEGGL 510
Query: 318 PGNTISKITKLPA-----LQDDGPSSD---------NYGRFSSR-DRFSRGGGSRFSRGG 362
G+ I I P+ L DD +D N R R DR + G+R RGG
Sbjct: 511 KGSDIGAIEIKPSFTLIGLPDDLSRADLDRLGAIEINGQRLDIRQDRGPKSSGARSDRGG 570
Query: 363 ARGGARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGG 398
RG DRRG RS+R S F+ R G
Sbjct: 571 YRGD-------DRRGGRSARPEHSGGHKKFTGGRKG 599
>gi|319790474|ref|YP_004152107.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
HB-1]
gi|317114976|gb|ADU97466.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
HB-1]
Length = 417
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 122/218 (55%), Gaps = 11/218 (5%)
Query: 11 STQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLA 70
+ +VG Q + +K I + K L L+ + +G TIVF +TKRDA ++
Sbjct: 203 NVKVGKQ--LITPKVKQRIILVRSEDKIKALEKLLKEH-EGVSTIVFVKTKRDAADIEKE 259
Query: 71 LTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN 129
L I + A+HGD+SQ QRE + FR+GK VLVATDVAARG+DI +V L+I+YELP
Sbjct: 260 LQRRGINARAIHGDLSQRQREFVMRAFREGKVKVLVATDVAARGIDIKDVGLVINYELPE 319
Query: 130 DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA 189
+PE++VHR GRTGRAG+EG AI + ++R + ++ G + E V V E
Sbjct: 320 NPESYVHRIGRTGRAGREGLAISLVAEPEKRRLYRIKGLKGVRPERFR---VNTVKELKK 376
Query: 190 EQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAAL 227
E + A N + P + A L+ E+ + L A L
Sbjct: 377 ELLEADANSLPP----YVKRLASELLSERSPEELVAVL 410
>gi|352684524|ref|YP_004896509.1| DEAD/DEAH box helicase [Acidaminococcus intestini RyC-MR95]
gi|350279179|gb|AEQ22369.1| DEAD/DEAH helicase [Acidaminococcus intestini RyC-MR95]
Length = 537
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 108/176 (61%), Gaps = 2/176 (1%)
Query: 53 KTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111
K I+F +TK+ DE+ +AL T +E LHGD+SQ QR+R + FRQ + +LVATDVAA
Sbjct: 250 KMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQTQRDRVMKKFRQDQVDILVATDVAA 309
Query: 112 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 171
RG+DI N+ ++++++P DPE++VHR GRTGRAG G A+ T + R ++ +ER V
Sbjct: 310 RGIDIDNITHVVNFDVPQDPESYVHRIGRTGRAGNTGVALTFITPREFRQLKLIERSVKT 369
Query: 172 KFEFVSPPVVEDVLESSAEQVVATLNGVHPES-VEFFTPTAQRLIEEKGTDALAAA 226
K P +VLE EQ+++ + + ++ + P A+ L + +AAA
Sbjct: 370 KIIRGQLPTDANVLEKQREQIISKMQSILEQNQYHDYLPIAEALENDYDIHDIAAA 425
>gi|167630436|ref|YP_001680935.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
gi|167593176|gb|ABZ84924.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
Length = 540
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 100/154 (64%), Gaps = 5/154 (3%)
Query: 52 GKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 110
G +I+F +TKR DE+ AL T +E LHGD++Q QR+R + FR GK +L+ATDVA
Sbjct: 257 GSSIIFCRTKRGVDELVAALETRGYFAEGLHGDLTQAQRDRVMKKFRDGKAELLIATDVA 316
Query: 111 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 170
ARGLD+ NV +I+Y++P DPE++VHR GRTGRAG++G AI + + R ++ +ER
Sbjct: 317 ARGLDVENVTHVINYDIPQDPESYVHRIGRTGRAGRKGIAITLINYREYRQLKLIERVTK 376
Query: 171 CKFEFVSPPVVEDVLESSAE----QVVATLNGVH 200
+ + P + D++E E ++V L+G H
Sbjct: 377 ARIQRRDLPSMADIVERQKEAHKMKIVKLLDGGH 410
>gi|310779133|ref|YP_003967466.1| DEAD/DEAH box helicase [Ilyobacter polytropus DSM 2926]
gi|309748456|gb|ADO83118.1| DEAD/DEAH box helicase domain protein [Ilyobacter polytropus DSM
2926]
Length = 526
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 108/178 (60%), Gaps = 3/178 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK D + + L SE LHGDISQ+ RE TL F++ K VL+ATDVAARG
Sbjct: 248 IVFCRTKNDVNVLVGKLQDRGYDSEGLHGDISQNHREITLKRFKEKKINVLIATDVAARG 307
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ ++ +I+Y +P DPE++VHR GRTGRAGKEGTAI T S+ R + ++R V +
Sbjct: 308 IDVNDLSHVINYAIPQDPESYVHRIGRTGRAGKEGTAITFITPSEYRKILQIQRIVKTEI 367
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIE-EKGTDALAAALAQ 229
P V++V+++ ++ LN + E E F A+ L+E E D +AA L
Sbjct: 368 RKEKVPGVKEVIQAKKNRMREELNEILDERKYEGFQEMAEELLEGESPADVVAALLTH 425
>gi|440781688|ref|ZP_20959916.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
pasteurianum DSM 525]
gi|440220406|gb|ELP59613.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
pasteurianum DSM 525]
Length = 522
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 133/242 (54%), Gaps = 10/242 (4%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK+ DE+ ++S E +HGD+ Q R TLN F+ G T L ATDVAARG
Sbjct: 247 IIFCRTKKSVDELVSTMSSKGYNIEGMHGDMKQKNRLSTLNKFKNGNLTFLAATDVAARG 306
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ N+ +I+YELP D E++VHR GRTGRA + GTAI + T ++ +E+D+ K
Sbjct: 307 IDVENITHVINYELPQDTESYVHRIGRTGRANRSGTAISLITRKDFTKLKQIEKDIKSKI 366
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
P +++++ ++ +V+ + N + E + F P + L +E + +AAAL + +
Sbjct: 367 TKQKIPTMQEIINIKSKNIVSKVSNILSTEEYKKFEPIIENLGKEYSLNQIAAALLK-NA 425
Query: 233 FSRPPSSR---SLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIH 289
+ S+ L N E V L + S R ++ +S++ F+ ++ IG I
Sbjct: 426 LDKEISTEYNDDLFNQENS-VRLFM---SIGRRDGINIKSLLEFIDTTSTVNSNYIGSID 481
Query: 290 II 291
I+
Sbjct: 482 IL 483
>gi|20092752|ref|NP_618827.1| ATP-dependent RNA helicase [Methanosarcina acetivorans C2A]
gi|19918045|gb|AAM07307.1| ATP-dependent RNA helicase [Methanosarcina acetivorans C2A]
Length = 555
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 114/179 (63%), Gaps = 2/179 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VF +TK D +++ L+ ++ALHGD+SQ +RE+ LN FR+ K VLVATDVAARG
Sbjct: 248 LVFCRTKTDTGQLAQKLSDRGYEADALHGDLSQQEREKILNKFRKQKINVLVATDVAARG 307
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+DI ++ +I+Y LP DPE++VHR GRTGRAGK+GTAI TS++ R + +++ +
Sbjct: 308 IDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEFRRLTYIKKTSKSEM 367
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 231
+ P ++DV+++ +V A L + E ++RL+EE + + AAL + +
Sbjct: 368 KKGRIPEIKDVIKAKRARVKAELEETIKTEEYGDCLEMSERLLEEYPAEKILAALLKYT 426
>gi|410028951|ref|ZP_11278787.1| DNA/RNA helicase [Marinilabilia sp. AK2]
Length = 570
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 67/142 (47%), Positives = 96/142 (67%), Gaps = 2/142 (1%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
++VF TKR DEV+ L + I +EALHGD+SQ QR + +N FR+G +VLVATDVAAR
Sbjct: 247 SVVFCNTKRVTDEVTEELIARGITAEALHGDLSQAQRTKVMNKFRKGHVSVLVATDVAAR 306
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR-TVRSLERDVGC 171
G+D+ NV+ + +++LP D E +VHR GRTGRAGK GTAI T + ++ LE+ +
Sbjct: 307 GIDVDNVEAVFNFDLPLDEENYVHRIGRTGRAGKSGTAISFVTGRKDMFRIKDLEKFIKT 366
Query: 172 KFEFVSPPVVEDVLESSAEQVV 193
++PP V D++E EQ++
Sbjct: 367 SIAKMAPPSVADLIELKKEQLI 388
>gi|374635240|ref|ZP_09706843.1| DEAD/DEAH box helicase domain protein [Methanotorris formicicus
Mc-S-70]
gi|373562963|gb|EHP89166.1| DEAD/DEAH box helicase domain protein [Methanotorris formicicus
Mc-S-70]
Length = 449
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 107/177 (60%), Gaps = 2/177 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VF +T+ D +EV+ L ++ALHGDI+Q QRER LN F++ + +LVATDVAARG
Sbjct: 244 LVFCKTRADVNEVANKLVENGYEADALHGDIAQKQRERILNKFKKKRINILVATDVAARG 303
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+DI N+ +I+Y LP +PE++VHR GRTGRAGK+GTAI + + R + +++
Sbjct: 304 IDINNLTHVINYSLPQNPESYVHRIGRTGRAGKKGTAITFISPDEYRKLNYIKKIAKANI 363
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 229
P ED+ + +++ + + E+ + +Q+LIEE G + A L +
Sbjct: 364 RKEKLPEKEDITNAKKSKILNKIAEIIKSENYLEYVELSQKLIEEFGAEKALAGLLK 420
>gi|325295336|ref|YP_004281850.1| DEAD/DEAH box helicase [Desulfurobacterium thermolithotrophum DSM
11699]
gi|325065784|gb|ADY73791.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 425
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 50 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 108
+G TIVF +TKRDA E+ L I + A+HGD+SQ QRE + F++GK LVATD
Sbjct: 249 QGTSTIVFVKTKRDAAEIEKELQKRSINARAIHGDLSQRQRENVMKAFKEGKVKTLVATD 308
Query: 109 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 162
VAARG+DI +V L+I+YELP +PE++VHR GRTGRAG+EGTAI + +++R +
Sbjct: 309 VAARGIDIKDVGLVINYELPENPESYVHRIGRTGRAGREGTAISLVADNEKRRI 362
>gi|423473254|ref|ZP_17449996.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6O-2]
gi|402426406|gb|EJV58531.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6O-2]
Length = 535
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HGD
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGK+G A+L T + ++++ER K + + P +++ LE + L + E
Sbjct: 334 AGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNE 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 394 NLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|403238270|ref|ZP_10916856.1| DEAD/DEAH box helicase domain-containing protein [Bacillus sp.
10403023]
Length = 496
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 136/240 (56%), Gaps = 11/240 (4%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 77
E I+ Y + K +L+ L+ + + I+F +TKR DE+S ALT A+
Sbjct: 209 EMTVPNIQQYYLEVQEKKKFDVLTRLLDIQSPE-LAIIFGRTKRRVDELSEALTLRGYAA 267
Query: 78 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
E +HGD+SQ +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR
Sbjct: 268 EGIHGDLSQAKRISVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHR 327
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES----SAEQVV 193
GRTGRAGK G A+ T + ++++E K + + PP +++ LE + E++V
Sbjct: 328 IGRTGRAGKTGMAMTFVTPREIGQLKNVENTTKRKMDKMKPPTLDEALEGQQKITMEKIV 387
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 253
+ + ++ ++T A+ L+EE + ++ AA +L ++ P S + E+ V ++
Sbjct: 388 SMIES---NNLSYYTRIAEELLEEHDSVSVVAAAIKL--MTKEPDSTPVKLTEEAPVRVK 442
>gi|431798400|ref|YP_007225304.1| DNA/RNA helicase [Echinicola vietnamensis DSM 17526]
gi|430789165|gb|AGA79294.1| DNA/RNA helicase, superfamily II [Echinicola vietnamensis DSM
17526]
Length = 567
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 119/202 (58%), Gaps = 10/202 (4%)
Query: 37 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNG 95
K +++ LI ++ + +VF TKR DEV+ L + I +EALHGD+SQ QR++ +N
Sbjct: 231 KMELITRLINIH-QFNLGVVFCNTKRATDEVTEGLIARGIMAEALHGDLSQAQRDKVMNK 289
Query: 96 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 155
FR+G TVLVATDVAARG+D+ NV+++ +Y+LP D E +VHR GRTGRAG+ G AI T
Sbjct: 290 FRKGHCTVLVATDVAARGIDVDNVEVVFNYDLPLDEEYYVHRIGRTGRAGRSGMAISFIT 349
Query: 156 SSQRRTV---RSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN---GVHPESVEFFTP 209
R+ + + LER + ++PP V ++++ +Q+V + ++ F
Sbjct: 350 G--RKDIFRLKDLERYIKTTLTKMNPPSVAEMIDQKKDQLVKEVTTSLSKEEDNQVFEAA 407
Query: 210 TAQRLIEEKGTDALAAALAQLS 231
Q L E D +A L +L
Sbjct: 408 LGQMLAEGLSMDQIALGLVKLQ 429
>gi|344343809|ref|ZP_08774676.1| DEAD/DEAH box helicase domain protein [Marichromatium purpuratum
984]
gi|343804793|gb|EGV22692.1| DEAD/DEAH box helicase domain protein [Marichromatium purpuratum
984]
Length = 625
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 4/222 (1%)
Query: 18 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IA 76
D + + I + T K +L+ ++ + G +VF +TK E++ L + A
Sbjct: 215 DSETVDTIDQHHCVVTRFHKLDVLTRILEIEEFDG-MVVFVRTKHGTTELADKLKAHGFA 273
Query: 77 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 136
+EAL+GD++Q RERT++ +QG+ +LVATDVAARGLD+ + ++++++P DP +VH
Sbjct: 274 AEALNGDMNQEMRERTIDRLKQGQLDILVATDVAARGLDVERISHVVNFDIPTDPSAYVH 333
Query: 137 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 196
R GRTGRAG+ G A+L+ +R +R++ER + + PP D+ ES ++ A +
Sbjct: 334 RIGRTGRAGRAGRALLLVEPRERGLLRAIERTIRRSVPAMEPPSAADLSESRIDRFTAEI 393
Query: 197 NGVHPESVEFFTPTAQRLIEEKGTDA--LAAALAQLSGFSRP 236
+ ++FF RL E + LAAALA L+ RP
Sbjct: 394 KEALGQDLDFFYRLLSRLNTELEVEMHDLAAALAYLNQRERP 435
>gi|423553834|ref|ZP_17530161.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus ISP3191]
gi|401182654|gb|EJQ89786.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus ISP3191]
Length = 528
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HGD
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGK+G A+L T + ++++ER K + + P +++ LE + L + E
Sbjct: 334 AGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENE 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 394 NLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|340374345|ref|XP_003385698.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Amphimedon queenslandica]
Length = 588
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 125/208 (60%), Gaps = 12/208 (5%)
Query: 39 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFR 97
TIL DLI VY+ + IVFT TK A ++ L+ + +++ +LHGD+SQ RE L FR
Sbjct: 287 TIL-DLINVYSPQ-RAIVFTTTKIQASDLGSFLSRNGVSATSLHGDLSQQMRETCLERFR 344
Query: 98 QGKFTVLVATDVAARGLDIPNVDLIIHYE-LPNDPETFVHRSGRTGRAGKEGTAILMFTS 156
GK ++ ATDVAARG+DIP +D ++ E P+ +++VHRSGRTGR G GT+IL+ +S
Sbjct: 345 SGKIKIIAATDVAARGIDIPEIDFVLQIEPPPSGIDSYVHRSGRTGRKGLPGTSILLLSS 404
Query: 157 SQ--RRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES-VEFFTPTAQR 213
SQ + +R L+R V + E + P ++V+ S + V ++ E + P A+
Sbjct: 405 SQDSQYFLRELKRVV--QVEEIKRPSRDEVITRSLDSAVKSIKAKKDEKLINAALPLAEE 462
Query: 214 LIEEKGTDALAAALAQLSG---FSRPPS 238
LI E G ALA+A+ + G + RP S
Sbjct: 463 LISEDGAKALASAIISICGIRVYDRPES 490
>gi|311112058|ref|YP_003983280.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
gi|310943552|gb|ADP39846.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
Length = 695
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 113/184 (61%), Gaps = 10/184 (5%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK++ +EV+ L + + A++GDI Q RERT++ R G+ +LVATDVAARG
Sbjct: 353 IVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRIDILVATDVAARG 412
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + L+++Y++P+D E++VHR GRTGRAG++G AIL T ++ +R +E+ K
Sbjct: 413 LDVERISLVVNYDIPHDTESYVHRIGRTGRAGRDGEAILFVTPREKYMLRQIEKATRQKV 472
Query: 174 EFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA--LAAAL 227
E + P +DV S AEQ+ T + E + FF + E T A +AAAL
Sbjct: 473 EPMHMPTAQDVNSSRKQRFAEQITET---IETEDLNFFRKIIEDYENEHDTTAEDIAAAL 529
Query: 228 AQLS 231
A ++
Sbjct: 530 AVIA 533
>gi|269838391|ref|YP_003320619.1| DEAD/DEAH box helicase [Sphaerobacter thermophilus DSM 20745]
gi|269787654|gb|ACZ39797.1| DEAD/DEAH box helicase domain protein [Sphaerobacter thermophilus
DSM 20745]
Length = 526
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 91/131 (69%), Gaps = 1/131 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TKR DE++ L S+ A+EALHGD+SQ QR+R + FR G+ +L+ATDVAARG
Sbjct: 244 IIFCRTKRGVDELTQQLQSLGYAAEALHGDLSQVQRDRVMARFRSGQAELLIATDVAARG 303
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + +I+Y++P DPE++VHR GRTGRAG+ G AI + T +RR +R +ER G +
Sbjct: 304 LDVEGITHVINYDIPGDPESYVHRIGRTGRAGRAGAAITLVTPRERRLLREIERATGVRM 363
Query: 174 EFVSPPVVEDV 184
P E+V
Sbjct: 364 TRRGVPTPEEV 374
>gi|423556774|ref|ZP_17533077.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MC67]
gi|401194089|gb|EJR01081.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MC67]
Length = 535
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 125/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + +K +L+ L+ + + I+F +TKR DE+S AL A+E +HGD
Sbjct: 215 IQQFYLEVQEKNKFDVLTRLLDIQSPE-LAIIFGRTKRRVDELSEALNLRGYAAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGK+G A+L T + ++++ER K + + P +++ LE + L + E
Sbjct: 334 AGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNE 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 394 NLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|406663218|ref|ZP_11071284.1| DEAD-box ATP-dependent RNA helicase CshA [Cecembia lonarensis LW9]
gi|405552735|gb|EKB48086.1| DEAD-box ATP-dependent RNA helicase CshA [Cecembia lonarensis LW9]
Length = 570
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/142 (47%), Positives = 95/142 (66%), Gaps = 2/142 (1%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
++VF TKR DEV+ L + I +EALHGD+SQ QR + +N FR+G +VLVATDVAAR
Sbjct: 247 SVVFCNTKRVTDEVTEELIARGITAEALHGDLSQAQRTKVMNKFRKGHVSVLVATDVAAR 306
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR-TVRSLERDVGC 171
G+D+ NV+ + +++LP D E +VHR GRTGRAGK G AI T + +R LE+ +
Sbjct: 307 GIDVDNVEAVFNFDLPLDEENYVHRIGRTGRAGKSGAAISFVTGRKDMFRIRDLEKFIKT 366
Query: 172 KFEFVSPPVVEDVLESSAEQVV 193
++PP V D++E EQ++
Sbjct: 367 SISKMAPPSVADLIELKKEQLI 388
>gi|42779348|ref|NP_976595.1| DEAD/DEAH box helicase [Bacillus cereus ATCC 10987]
gi|206977074|ref|ZP_03237974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
H3081.97]
gi|217957807|ref|YP_002336351.1| DEAD/DEAH box family ATP-dependent RNA helicase [Bacillus cereus
AH187]
gi|222094007|ref|YP_002528058.1| dead/deah box helicase [Bacillus cereus Q1]
gi|229137077|ref|ZP_04265701.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST26]
gi|229194624|ref|ZP_04321421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293]
gi|375282337|ref|YP_005102772.1| ATP-dependent RNA helicase [Bacillus cereus NC7401]
gi|384178162|ref|YP_005563924.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|402554174|ref|YP_006595445.1| DEAD/DEAH box helicase [Bacillus cereus FRI-35]
gi|423357187|ref|ZP_17334786.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus IS075]
gi|423376168|ref|ZP_17353482.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus AND1407]
gi|423572348|ref|ZP_17548555.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-A12]
gi|423577914|ref|ZP_17554033.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-D12]
gi|423607941|ref|ZP_17583834.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD102]
gi|81700027|sp|Q73EU1.1|CSHA_BACC1 RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|42735263|gb|AAS39203.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
ATCC 10987]
gi|206744723|gb|EDZ56130.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
H3081.97]
gi|217064501|gb|ACJ78751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH187]
gi|221238056|gb|ACM10766.1| DEAD/DEAH box helicase [Bacillus cereus Q1]
gi|228588845|gb|EEK46866.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293]
gi|228646384|gb|EEL02594.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST26]
gi|324324246|gb|ADY19506.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|358350860|dbj|BAL16032.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
NC7401]
gi|401075815|gb|EJP84184.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus IS075]
gi|401089159|gb|EJP97331.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus AND1407]
gi|401197715|gb|EJR04643.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-A12]
gi|401203960|gb|EJR10791.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-D12]
gi|401239515|gb|EJR45942.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD102]
gi|401795384|gb|AFQ09243.1| DEAD/DEAH box helicase [Bacillus cereus FRI-35]
Length = 525
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 125/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HGD
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPE 202
AGK+G A+L T + ++++ER K + + P +++ LE + L N + E
Sbjct: 334 AGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQNTIENE 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 394 NLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|443325427|ref|ZP_21054123.1| DNA/RNA helicase, superfamily II [Xenococcus sp. PCC 7305]
gi|442794981|gb|ELS04372.1| DNA/RNA helicase, superfamily II [Xenococcus sp. PCC 7305]
Length = 494
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 109/178 (61%), Gaps = 2/178 (1%)
Query: 55 IVFTQTKRDADEVSLALTSIIAS-EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TKR A E+++ L S + HG++SQ QRER + FR GK ++VATD+AARG
Sbjct: 246 IIFVRTKRTASELTIKLQEAGHSVDEYHGNLSQIQRERLVKRFRDGKVKMIVATDIAARG 305
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ N+ +I+Y+LP++ ET++HR GRTGRAGK GTAI + RR ++ +ER + +
Sbjct: 306 LDVENLTHVINYDLPDNAETYIHRIGRTGRAGKTGTAIALIQPMDRRMLKQIERRLRVRL 365
Query: 174 EFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQL 230
E P V +++ AT+ + E + F P + L +E A+AAA+ Q+
Sbjct: 366 ETAKIPNRAQVEAKRIDKLQATVKATLAGERMASFLPLVRELSDEYDPQAIAAAVLQM 423
>gi|323453440|gb|EGB09312.1| hypothetical protein AURANDRAFT_895, partial [Aureococcus
anophagefferens]
Length = 591
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 157/294 (53%), Gaps = 28/294 (9%)
Query: 40 ILSDLITVYAKGG--KTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFR 97
+++D++ Y G + ++F +TK + ++V + ALHGDI Q RE+T+ FR
Sbjct: 254 VINDVVGAYGLNGAARCVLFCETKAECNDVVDSKEITYERRALHGDIPQALREKTMAAFR 313
Query: 98 QGKFTVLVATDVAARGLDIPNVDLIIHYELPN------DPETFVHRSGRTGRAGKEGTAI 151
G+F +LVATDVAARGLD+ V+L+++ + P D ET+VHRSGRTGRAG++GT +
Sbjct: 314 AGQFKILVATDVAARGLDM-VVELVVNNKPPATRSGWADAETYVHRSGRTGRAGRKGTCV 372
Query: 152 LMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFF---- 207
++ + R T+ +ER F++V P DVL ++A+ + + V P ++ F
Sbjct: 373 TLYQTKHRATLEEIERKTKNAFDWVGAPRARDVLSAAADAALRAVEDVAPSALPCFEDRA 432
Query: 208 TPTAQRLIEEKGTDA-------LAAALAQLSGFSR-PPSSRSLINHEQGWVTLQLTRDSA 259
A G+ A L AALA+L+G+ R P+ RSL+ + + +VT A
Sbjct: 433 AALAATFAGRHGSSATGGYAEALRAALAKLAGYERGKPADRSLLTNSEHYVTCHY----A 488
Query: 260 FSRGFMSARSVMGFL-SDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELL 312
S V FL ++ P D + + ++A+ GAVFD P +L+
Sbjct: 489 AGLPIHSISYVWNFLRRELKPEVCDALKAMQLVAEG--DGAVFDAPASAKADLV 540
>gi|383808644|ref|ZP_09964182.1| DEAD/DEAH box helicase / helicase C-terminal domain / DbpA RNA
binding domain multi-domain protein [Rothia aeria F0474]
gi|383448538|gb|EID51497.1| DEAD/DEAH box helicase / helicase C-terminal domain / DbpA RNA
binding domain multi-domain protein [Rothia aeria F0474]
Length = 699
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 113/184 (61%), Gaps = 10/184 (5%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK++ +EV+ L + + A++GDI Q RERT++ R G+ +LVATDVAARG
Sbjct: 347 IVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRIDILVATDVAARG 406
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + L+++Y++P+D E++VHR GRTGRAG++G AIL T +R +R +E+ K
Sbjct: 407 LDVERISLVVNYDIPHDTESYVHRIGRTGRAGRDGEAILFVTPRERYMLRQIEKATRQKV 466
Query: 174 EFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA--LAAAL 227
E + P +DV + AEQ+ T + E ++FF Q E A +AAAL
Sbjct: 467 EPMRMPTAQDVNANRKQRFAEQITTT---IETEDLDFFRQIIQDYENEHDITAEDIAAAL 523
Query: 228 AQLS 231
A ++
Sbjct: 524 AVIA 527
>gi|283798617|ref|ZP_06347770.1| ATP-dependent RNA helicase [Clostridium sp. M62/1]
gi|291073603|gb|EFE10967.1| DEAD/DEAH box helicase [Clostridium sp. M62/1]
gi|295115719|emb|CBL36566.1| Superfamily II DNA and RNA helicases [butyrate-producing bacterium
SM4/1]
Length = 553
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 106/170 (62%), Gaps = 6/170 (3%)
Query: 28 YAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQ 86
Y +K ++ L+ +YA ++VF TK+ DE+ LAL +E LHGD+ Q
Sbjct: 221 YYYDVKPKNKLEVMCRLLDMYAPK-LSVVFCNTKKQVDELVLALQGRGYFAEGLHGDLKQ 279
Query: 87 HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 146
QR+R +NGFR+G+ +LVATDVAARG+D+ +V+ + +Y++P D E +VHR GRTGRAG+
Sbjct: 280 VQRDRVMNGFRKGRTDILVATDVAARGIDVDDVEAVFNYDIPQDEEYYVHRIGRTGRAGR 339
Query: 147 EGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV--VEDVLESSAEQVVA 194
EG A + + +R ++R CK + V P+ ++DV E A++++
Sbjct: 340 EGKAFSLVVGKEVYKLRDIQR--YCKTKIVPQPIPSIDDVTEIKADKILC 387
>gi|390566282|ref|ZP_10246715.1| DEAD-box ATP-dependent RNA helicase cshA [Nitrolancetus hollandicus
Lb]
gi|390170465|emb|CCF86060.1| DEAD-box ATP-dependent RNA helicase cshA [Nitrolancetus hollandicus
Lb]
Length = 528
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 107/167 (64%), Gaps = 4/167 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TKR+ D+++ L S+ +EALHGD+SQ QR+R + FR G+ +L+ATDVA+RG
Sbjct: 244 IIFCRTKREVDDLTQKLESLGYPAEALHGDLSQVQRDRVMGRFRSGQTELLIATDVASRG 303
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V +I+Y++P DPE++VHR GRTGRAG+ G AI + T + R +R++ER G +
Sbjct: 304 LDIEQVSHVINYDIPLDPESYVHRIGRTGRAGRPGVAITLVTPRESRLLRAIERATGGRI 363
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGT 220
E S P E++ E + +L V + E TP ++EE T
Sbjct: 364 ERRSVPTAEEIAARQRELLGESLATVIQQD-ELGTPMM--IVEELST 407
>gi|73667695|ref|YP_303710.1| ATP-dependent RNA helicase [Methanosarcina barkeri str. Fusaro]
gi|72394857|gb|AAZ69130.1| ATP-dependent RNA helicase [Methanosarcina barkeri str. Fusaro]
Length = 579
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 112/179 (62%), Gaps = 2/179 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VF +TK D +++ L A++ALHGD+SQ +RE+ LN FR+ K +LVATDVAARG
Sbjct: 248 LVFCRTKTDTSQLAQKLGDRGYAADALHGDLSQREREKILNRFRKQKINILVATDVAARG 307
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+DI ++ +I+Y LP DPE++VHR GRTGRAGK+GTAI TS++ R + +++
Sbjct: 308 IDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEYRRLTYIKKTSKSAM 367
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 231
+ P ++DV+++ +V A L + E +++ +EE + + AAL + S
Sbjct: 368 KRGRIPEIKDVIKAKRARVKAELEETIKNEEYGDCLEMSEKFLEEYPAEKILAALLKYS 426
>gi|295090645|emb|CBK76752.1| Superfamily II DNA and RNA helicases [Clostridium cf.
saccharolyticum K10]
Length = 553
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 106/170 (62%), Gaps = 6/170 (3%)
Query: 28 YAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQ 86
Y +K ++ L+ +YA ++VF TK+ DE+ LAL +E LHGD+ Q
Sbjct: 221 YYYDVKPKNKLEVMCRLLDMYAPK-LSVVFCNTKKQVDELVLALQGRGYFAEGLHGDLKQ 279
Query: 87 HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 146
QR+R +NGFR+G+ +LVATDVAARG+D+ +V+ + +Y++P D E +VHR GRTGRAG+
Sbjct: 280 VQRDRVMNGFRKGRTDILVATDVAARGIDVDDVEAVFNYDIPQDEEYYVHRIGRTGRAGR 339
Query: 147 EGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV--VEDVLESSAEQVVA 194
EG A + + +R ++R CK + V P+ ++DV E A++++
Sbjct: 340 EGKAFSLVVGKEVYKLRDIQR--YCKTKIVPQPIPSIDDVTEIKADKILC 387
>gi|423525845|ref|ZP_17502297.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA4-10]
gi|401165636|gb|EJQ72953.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA4-10]
Length = 533
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 125/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + +K +L+ L+ + + I+F +TKR DE+S AL A+E +HGD
Sbjct: 215 IQQFYLEVQEKNKFDVLTRLLDIQSPE-LAIIFGRTKRRVDELSEALNLRGYAAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQAKRMSVLRKFKEGTIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGK+G A+L T + ++++ER K + + P +++ LE + L + E
Sbjct: 334 AGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNE 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 394 NLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|227503818|ref|ZP_03933867.1| superfamily II helicase [Corynebacterium striatum ATCC 6940]
gi|227199642|gb|EEI79690.1| superfamily II helicase [Corynebacterium striatum ATCC 6940]
Length = 678
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 112/183 (61%), Gaps = 5/183 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK + +EV+ +L + A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 297 IVFCRTKHETEEVADSLRDAGYNAAAINGDIAQQQRERTVDQLKDGRLDILVATDVAARG 356
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + +++Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER +
Sbjct: 357 LDVDRITHVVNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNARL 416
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRL--IEEKGTDALAAALA-Q 229
E + P + V E E+ +A + + + EFF + D +AAALA Q
Sbjct: 417 EEMDLPSADAVNEKRKEKFLAKIGESLGDKQFEFFRDMVREYSAANNVAMDDIAAALAVQ 476
Query: 230 LSG 232
L G
Sbjct: 477 LQG 479
>gi|390944989|ref|YP_006408750.1| DNA/RNA helicase [Belliella baltica DSM 15883]
gi|390418417|gb|AFL85995.1| DNA/RNA helicase, superfamily II [Belliella baltica DSM 15883]
Length = 591
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 109/171 (63%), Gaps = 10/171 (5%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
++VF TKR DEV+ +L S I +EALHGD+SQ QR + +N FR+G +VLVATDVAAR
Sbjct: 247 SVVFCNTKRSTDEVTESLISKGIMAEALHGDLSQAQRTKVMNKFRKGTCSVLVATDVAAR 306
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT--VRSLERDVG 170
G+D+ +V+ + +Y+LP D E +VHR GRTGRAGK G A L F + ++ T +R LE+ +
Sbjct: 307 GIDVDDVEAVFNYDLPLDEENYVHRIGRTGRAGKSGMA-LSFVTGRKDTYRLRDLEKFIK 365
Query: 171 CKFEFVSPPVVEDVLE----SSAEQVVATLNGVHPESVEFFTPTAQRLIEE 217
+ PP V D++E S + V A++N V E + F T ++ E
Sbjct: 366 TTIHKMDPPSVTDLVELKKASLVKDVNASINKV--EDNQLFEETIGMMLAE 414
>gi|300781459|ref|ZP_07091313.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
33030]
gi|300533166|gb|EFK54227.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
33030]
Length = 675
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 95/131 (72%), Gaps = 1/131 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK++ +E++ L + ++ A++GDI+Q QRERT++ R G+ +LVATDVAARG
Sbjct: 313 IVFVRTKQETEEIAEKLRARGFSAAAINGDIAQQQRERTVDMLRDGRLDILVATDVAARG 372
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + +++Y++PND E++VHR GRTGRAG+ G A+L T +RR +RS+E+ G K
Sbjct: 373 LDVERISHVLNYDIPNDTESYVHRIGRTGRAGRTGEALLFVTPRERRMLRSIEKVTGAKI 432
Query: 174 EFVSPPVVEDV 184
E + P V++V
Sbjct: 433 EEMDLPTVDEV 443
>gi|373859820|ref|ZP_09602543.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
gi|372450463|gb|EHP23951.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
Length = 487
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 107/178 (60%), Gaps = 2/178 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE++ AL +E +HGD+SQ +R L F++G VLVATDVAARG
Sbjct: 244 IVFGRTKRRVDELAEALNLRGYMAEGIHGDLSQAKRLSVLKKFKEGSIDVLVATDVAARG 303
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ + +ER K
Sbjct: 304 LDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVALTFVTHREKSYLSVVERTTKRKM 363
Query: 174 EFVSPPVVEDVLESSAEQVV-ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQL 230
E + PP V+ LE + VV L + +++++ A L++++ + AA+ ++
Sbjct: 364 EKMVPPTVDQALEGQQKAVVEKILQTIEANNLQYYKEAADELLDQQDPSTVVAAMLKM 421
>gi|330836276|ref|YP_004410917.1| DEAD/DEAH box helicase [Sphaerochaeta coccoides DSM 17374]
gi|329748179|gb|AEC01535.1| DEAD/DEAH box helicase domain protein [Sphaerochaeta coccoides DSM
17374]
Length = 634
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 113/183 (61%), Gaps = 4/183 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VF +TK DEV+ L + ++ALHGD+SQ QRE LN FR+ + +VLVATDVAARG
Sbjct: 248 LVFCRTKLQCDEVTEKLVARGQDADALHGDLSQKQREAILNRFRRRQLSVLVATDVAARG 307
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+DIP++ +I+Y +P +PE ++HR GRTGRAG+ GTA+ T + ++ ++R +
Sbjct: 308 IDIPDLTHVINYSIPQNPEAYIHRIGRTGRAGRSGTAVTFITPREYSKLKYIQRIAHTEI 367
Query: 174 EFVSPPVVEDVLESSAEQVVA-TLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ P + D++E+ ++ T + + + F P A+ L+E + + AAL L+G
Sbjct: 368 HRETVPAISDIMEAKRNRIATETESLLTVAESDQFRPLARHLLESHAAEDVVAAL--LTG 425
Query: 233 FSR 235
++
Sbjct: 426 LNK 428
>gi|423456146|ref|ZP_17432999.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5X1-1]
gi|401131812|gb|EJQ39461.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5X1-1]
Length = 520
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HGD
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGK+G A+L T + ++++ER K + + P +++ LE + L + E
Sbjct: 334 AGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNE 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 394 NLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|152974078|ref|YP_001373595.1| DEAD/DEAH box helicase [Bacillus cytotoxicus NVH 391-98]
gi|152022830|gb|ABS20600.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
391-98]
Length = 511
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HGD
Sbjct: 227 IQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGD 285
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 286 LTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 345
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN-GVHPE 202
AGK G A+L T + ++++ER K + + P +++ LE + L + +
Sbjct: 346 AGKTGLAMLFVTPREMGQLKNIERTTKRKMDRMKAPTLDEALEGQQRLIAEKLQSAIEND 405
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++A A L ++ P +
Sbjct: 406 NLSYYKRIAEEMLEE--NDSVAVVAAALKMMTKEPDT 440
>gi|411008888|ref|ZP_11385217.1| ATP-dependent RNA helicase [Aeromonas aquariorum AAK1]
Length = 589
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 123/231 (53%), Gaps = 19/231 (8%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKT-----------I 55
M +V + K + IK+ + + TAT+ R + ++ T +
Sbjct: 150 MPEQIRRVAQKHLKQPKEIKIASKTATATTIRQRYWQVTGLHKLDAMTRLLEVEPYEALL 209
Query: 56 VFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 114
VF +TK A+E++ L + A EALHGDI Q RERT++ RQG+ +L+ATDV ARGL
Sbjct: 210 VFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIATDVVARGL 269
Query: 115 DIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 174
D+ + +++Y++P D E++VHR GRTGRAG++G AIL +RR +R++E E
Sbjct: 270 DVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAIEHATRQAIE 329
Query: 175 FVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 221
+ P ED+ L E++ T+ G E +E + LIEE D
Sbjct: 330 PMKMPSTEDINQHRLAKFKERIRETMMG---EELEIYVNLVNELIEEDSAD 377
>gi|434399810|ref|YP_007133814.1| DEAD/DEAH box helicase domain protein [Stanieria cyanosphaera PCC
7437]
gi|428270907|gb|AFZ36848.1| DEAD/DEAH box helicase domain protein [Stanieria cyanosphaera PCC
7437]
Length = 485
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 108/181 (59%), Gaps = 8/181 (4%)
Query: 55 IVFTQTKRDADEVSLALTSIIAS-EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK+ A E++ L S + HGD+SQ QRER + FR GK ++VATD+AARG
Sbjct: 246 IIFVRTKKTASELTSKLQEAGHSVDEYHGDLSQIQRERLVQRFRDGKIKMIVATDIAARG 305
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ N+ +I+Y+LP++ ET++HR GRTGRAGK GTAI + RRT+R +E + +
Sbjct: 306 LDVENLTHVINYDLPDNAETYIHRIGRTGRAGKHGTAIALVQPIDRRTLRQIEHRLRQRL 365
Query: 174 EFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 229
E P +V L QV TL+G E + F P + L +E A+AAA Q
Sbjct: 366 EINKIPSRTEVEAKRLAKLQAQVQETLSG---ERMASFLPLVRELSDEYDPQAIAAAALQ 422
Query: 230 L 230
+
Sbjct: 423 M 423
>gi|374340782|ref|YP_005097518.1| DNA/RNA helicase [Marinitoga piezophila KA3]
gi|372102316|gb|AEX86220.1| DNA/RNA helicase, superfamily II [Marinitoga piezophila KA3]
Length = 533
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 110/177 (62%), Gaps = 2/177 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VF +TK D D VS L ++EALHGD+SQ+QRER L F+ + +LVATDVAARG
Sbjct: 247 LVFCRTKVDVDTVSNRLIDRGYSAEALHGDLSQYQRERILRKFKTKRANILVATDVAARG 306
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+DI ++ +I+Y LP +PE++VHR GRTGRAGKEGTAI T + R + ++R
Sbjct: 307 IDISDLTHVINYSLPQNPESYVHRIGRTGRAGKEGTAITFVTPEEYRKLLFIKRISKSDI 366
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGV-HPESVEFFTPTAQRLIEEKGTDALAAALAQ 229
+ P ++DV+ES ++ +N + E+ E + A ++E + + + AA+ +
Sbjct: 367 KKKRIPKIKDVIESKKNRIKTEINNILESETYENYLELANEMLENRNANEVLAAVLK 423
>gi|336122353|ref|YP_004577128.1| DEAD/DEAH box helicase domain-containing protein
[Methanothermococcus okinawensis IH1]
gi|334856874|gb|AEH07350.1| DEAD/DEAH box helicase domain protein [Methanothermococcus
okinawensis IH1]
Length = 535
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 111/183 (60%), Gaps = 4/183 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VF +T+ D ++++ L + +E +HGDI Q+QRER L+ F+ + +LVATDVAARG
Sbjct: 247 LVFCKTRADVNDIANKLANRGYKAEGIHGDIVQNQRERILSRFKNKRSNILVATDVAARG 306
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+DI N+ +I+Y LP +PE++VHR GRTGRAGK+GTAI + R ++ +++
Sbjct: 307 IDINNLTHVINYSLPQNPESYVHRIGRTGRAGKKGTAITFVQPDEFRKLKYIKKIAKTDI 366
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHP--ESVEFFTPTAQRLIEEKGTDALAAALAQLS 231
E P VED++ + V+ ++ + E + + A++L+EE DA +A L
Sbjct: 367 EKRELPTVEDIIHAKKSSVIENISKIVSSGEVSQEYLDIAKKLLEENNNDA-EKVIASLL 425
Query: 232 GFS 234
+S
Sbjct: 426 KYS 428
>gi|404450977|ref|ZP_11015952.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
gi|403763394|gb|EJZ24353.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
Length = 578
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/142 (47%), Positives = 96/142 (67%), Gaps = 2/142 (1%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
++VF TKR DEV+ L + I +EALHGD+SQ QR + +N FR+G +VLVATDVAAR
Sbjct: 247 SVVFCNTKRVTDEVTEELVARGIMAEALHGDLSQAQRTKVMNKFRKGHVSVLVATDVAAR 306
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR-TVRSLERDVGC 171
G+D+ NV+ + +++LP D E +VHR GRTGRAGK GTAI T + +R +E+ +
Sbjct: 307 GIDVDNVEAVFNFDLPLDEENYVHRIGRTGRAGKSGTAINFVTGRKDMFRIRDIEKFIKT 366
Query: 172 KFEFVSPPVVEDVLESSAEQVV 193
++PP V D++E +Q+V
Sbjct: 367 TISKMAPPSVSDLIELKKQQLV 388
>gi|269468408|gb|EEZ80073.1| hypothetical protein Sup05_1317 [uncultured SUP05 cluster
bacterium]
Length = 614
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 151/286 (52%), Gaps = 34/286 (11%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK E+S L++ ++EA++GDI Q QRE+ +N F++G +LVATDVAARG
Sbjct: 256 IIFARTKTLTIELSEKLSARGFSAEAINGDIQQSQREKIINKFKKGGIDILVATDVAARG 315
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+P + +++Y++P D ET+VHR GRTGRAG+EG AIL + +RR + ++ER K
Sbjct: 316 LDVPRISHVVNYDIPQDAETYVHRIGRTGRAGREGEAILFVSHRERRMLNNIERVTRQKI 375
Query: 174 EFVSPP----VVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 229
E + P + E +++ +++ T+N E Q EE +AAALA
Sbjct: 376 EPLELPTAKIINEKRIDTFKKRITETINNQDLSVFEKLVTEFQEANEEIAHLKVAAALAH 435
Query: 230 LS-------------GFSR----------PPSSRSLINHEQGWVTLQLTRDSAFSRGFMS 266
++ F R P + SL +H + + ++ + + +
Sbjct: 436 IAQGNEPLLLSEKEPSFGRDQKPGEEKVVPVEANSLKDHPK--IPMRRYKLEVGNNNNIK 493
Query: 267 ARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELL 312
+++G +++ ++ IG I I + + DLP+E+ +E+L
Sbjct: 494 PGNILGAIANEADMDSEYIGSIQIFDN----FSTVDLPDEMPEEVL 535
>gi|260063169|ref|YP_003196249.1| ATP-dependent RNA helicase [Robiginitalea biformata HTCC2501]
gi|88783263|gb|EAR14435.1| ATP-dependent RNA helicase [Robiginitalea biformata HTCC2501]
Length = 579
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 112/184 (60%), Gaps = 3/184 (1%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+++F +TKRD +V+ L + ALHGD+SQ QR+ +N FR+ + +LVATDVAAR
Sbjct: 232 SVIFCRTKRDTQKVAEKLIEDGYNAGALHGDLSQQQRDLVMNAFRKRQLQLLVATDVAAR 291
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+D+ +V +IHY+LP++ ET+ HRSGRTGRAGK G ++++ T S++R +R++E+ +G
Sbjct: 292 GIDVDDVTHVIHYQLPDETETYTHRSGRTGRAGKSGVSMVILTRSEQRRIRAIEKIIGRP 351
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALAAALAQLS 231
FE P ++ E + + V S+E + P + + + D L + +
Sbjct: 352 FEQKKLPDGMEICEIQLYHLANKIRSVEVNPSIEAYLPAIEDVFKGMDRDTLIRKMISVE 411
Query: 232 GFSR 235
FSR
Sbjct: 412 -FSR 414
>gi|397905196|ref|ZP_10506067.1| Cold-shock DEAD-box protein A [Caloramator australicus RC3]
gi|397161845|emb|CCJ33401.1| Cold-shock DEAD-box protein A [Caloramator australicus RC3]
Length = 526
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/295 (31%), Positives = 156/295 (52%), Gaps = 18/295 (6%)
Query: 37 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNG 95
K ILS L+ +Y +VF TK+ DEV +L + ++ALHGD+ Q+QR+R +
Sbjct: 230 KIEILSRLLDIY-NPKLALVFCNTKKKVDEVVSSLQARGYLADALHGDMKQNQRDRVMAK 288
Query: 96 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 155
FR G VLVATDVAARG+D+ +V+++ +Y++P D E +VHR GRTGRAG+EG A +
Sbjct: 289 FRSGTIDVLVATDVAARGIDVEDVEIVFNYDVPQDEEYYVHRIGRTGRAGREGKAFTFVS 348
Query: 156 SSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN-GVHPESVEFFTPTAQRL 214
+R ++R K + P + DV ES +++ + ++ ++E ++ +R+
Sbjct: 349 GKDIYKLRDIQRYTKTKIKLQKIPTLHDVEESRTSKIIDRIKESINEGNLEKYSDIIERI 408
Query: 215 IEEKGTDA-LAAALAQL-----SGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSAR 268
I+++ T +AAAL ++ + + E G V L + +S R
Sbjct: 409 IDDEYTSLDVAAALLKIVMSEDKRYDEIEDAFEGTGAEPGMVRLFVNVGKNHK---ISPR 465
Query: 269 SVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 323
++G ++D D IG+I I + + ++P + A E+L+ I NTI
Sbjct: 466 DIVGAIADKVKLPGDLIGRIDIFD----KFSFVEVPTDYANEVLD--IMKNNTIK 514
>gi|67920440|ref|ZP_00513960.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Crocosphaera watsonii WH 8501]
gi|416377119|ref|ZP_11683540.1| Cold-shock DEAD-box protein A [Crocosphaera watsonii WH 0003]
gi|67857924|gb|EAM53163.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Crocosphaera watsonii WH 8501]
gi|357266298|gb|EHJ14951.1| Cold-shock DEAD-box protein A [Crocosphaera watsonii WH 0003]
Length = 480
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 108/181 (59%), Gaps = 8/181 (4%)
Query: 55 IVFTQTKRDADEVSLALTSIIAS-EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK+ A E++ L I S + HG++SQ QRER + FR GK ++VATD+AARG
Sbjct: 246 IIFVRTKQTASELTTRLQEIGHSVDEYHGNLSQSQRERLVYRFRDGKIKLVVATDIAARG 305
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ N+ +I+Y+LP++ ET++HR GRTGRAGK GTAI + RR VR +ER + K
Sbjct: 306 LDVENLSHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLIEPVDRRMVRQIERKLRQKL 365
Query: 174 EFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 229
E P V +E ++ +L G E + F P + L +E A+AAA Q
Sbjct: 366 ETCKIPSRSQVEAKRIEKLQNEIKESLAG---ERMASFLPLVRELSDEYDPQAIAAAALQ 422
Query: 230 L 230
+
Sbjct: 423 M 423
>gi|390941377|ref|YP_006405114.1| DNA/RNA helicase [Sulfurospirillum barnesii SES-3]
gi|390194484|gb|AFL69539.1| DNA/RNA helicase, superfamily II [Sulfurospirillum barnesii SES-3]
Length = 590
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 111/184 (60%), Gaps = 9/184 (4%)
Query: 53 KTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111
K+IVF +TK++ D +S L ++ A++ LHGD+ Q+QRE + FR + +LVATDVAA
Sbjct: 249 KSIVFCRTKKEVDRLSTQLMAVGYAAKGLHGDMEQNQRESVIKAFRSSQIEILVATDVAA 308
Query: 112 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 171
RGL++ ++ + +Y +P DPE++VHR GRTGRAGK+GTAI + T + +++ + + VG
Sbjct: 309 RGLNVADISHVFNYHMPFDPESYVHRIGRTGRAGKKGTAITLVTPIEFHSMQRIGKKVGS 368
Query: 172 KFEFVSPPVVEDVLESSAEQVVATLNG--VHPESVEFFTPTAQRLIEEKGTDALAAALAQ 229
K E P + DV E+ ++ + +H +V+ L+EE+ D AL
Sbjct: 369 KIEHRIVPSLRDVKENKLVKIADDIKNADIHESAVKLLA-----LLEEE-MDMSQIALKL 422
Query: 230 LSGF 233
LS
Sbjct: 423 LSNL 426
>gi|405980982|ref|ZP_11039311.1| hypothetical protein HMPREF9240_00317 [Actinomyces neuii BVS029A5]
gi|404393001|gb|EJZ88058.1| hypothetical protein HMPREF9240_00317 [Actinomyces neuii BVS029A5]
Length = 576
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 106/170 (62%), Gaps = 2/170 (1%)
Query: 52 GKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 110
G TIVF +T+ DA+EV+ +T+ + A+ GD++Q +RER + R G VLVATDVA
Sbjct: 242 GATIVFVRTRLDAEEVANDMTARGFRTAAISGDVAQAERERIVERLRNGTLDVLVATDVA 301
Query: 111 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 170
ARGLD+ ++L++++++P E +VHR GRTGRAG+EGTA+ FT +R +R +E+ G
Sbjct: 302 ARGLDVERIELVVNFDVPRQDEAYVHRIGRTGRAGREGTALSFFTPRERGKLRQIEKLTG 361
Query: 171 CKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKG 219
K E V P + V A Q++ L + + +E + + L EE+G
Sbjct: 362 TKMEAVRVPSPQQVRTHKAHQILDKLPERIASKGLELYFGLIEELAEEQG 411
>gi|117621384|ref|YP_857155.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|117562791|gb|ABK39739.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 642
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 123/231 (53%), Gaps = 19/231 (8%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKT-----------I 55
M +V + K + IK+ + + TAT+ R + ++ T +
Sbjct: 203 MPEQIRRVAQKHLKQPKEIKIASKTATATTIRQRYWQVTGLHKLDAMTRLLEVEPYEALL 262
Query: 56 VFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 114
VF +TK A+E++ L + A EALHGDI Q RERT++ RQG+ +L+ATDV ARGL
Sbjct: 263 VFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIATDVVARGL 322
Query: 115 DIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 174
D+ + +++Y++P D E++VHR GRTGRAG++G AIL +RR +R++E E
Sbjct: 323 DVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAIEHATRQAIE 382
Query: 175 FVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 221
+ P ED+ L E++ T+ G E +E + LIEE D
Sbjct: 383 PMKMPSTEDINQHRLAKFKERIRETMMG---EELEIYVNLVNELIEEDSAD 430
>gi|423197144|ref|ZP_17183727.1| hypothetical protein HMPREF1171_01759 [Aeromonas hydrophila SSU]
gi|404631894|gb|EKB28525.1| hypothetical protein HMPREF1171_01759 [Aeromonas hydrophila SSU]
Length = 631
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 123/231 (53%), Gaps = 19/231 (8%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKT-----------I 55
M +V + K + IK+ + + TAT+ R + ++ T +
Sbjct: 192 MPEQIRRVAQKHLKQPKEIKIASKTATATTIRQRYWQVTGLHKLDAMTRLLEVEPYEALL 251
Query: 56 VFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 114
VF +TK A+E++ L + A EALHGDI Q RERT++ RQG+ +L+ATDV ARGL
Sbjct: 252 VFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIATDVVARGL 311
Query: 115 DIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 174
D+ + +++Y++P D E++VHR GRTGRAG++G AIL +RR +R++E E
Sbjct: 312 DVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAIEHATRQAIE 371
Query: 175 FVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 221
+ P ED+ L E++ T+ G E +E + LIEE D
Sbjct: 372 PMKMPSTEDINQHRLAKFKERIRETMMG---EELEIYVNLVNELIEEDSAD 419
>gi|126659493|ref|ZP_01730626.1| ATP-dependent RNA helicase; DeaD [Cyanothece sp. CCY0110]
gi|126619227|gb|EAZ89963.1| ATP-dependent RNA helicase; DeaD [Cyanothece sp. CCY0110]
Length = 478
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 116/200 (58%), Gaps = 9/200 (4%)
Query: 36 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIAS-EALHGDISQHQRERTLN 94
SKR L ++ + I+F +TK+ A +++ L I S + HG++SQ QRER ++
Sbjct: 228 SKRKALQPILEI-EDPESAIIFVRTKQTASDLTSKLQEIGHSVDEYHGNLSQSQRERLVH 286
Query: 95 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMF 154
FR GK ++VATD+AARGLD+ N+ +I+Y+LP++ ET++HR GRTGRAGK GTAI +
Sbjct: 287 RFRDGKIKLVVATDIAARGLDVENLSHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLI 346
Query: 155 TSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPT 210
RR VR +E+ + K E P V LE Q+ +L G E + F P
Sbjct: 347 EPIDRRMVRQIEKRLRQKLETCKLPSRSQVEAKRLEKLQNQIKESLAG---ERMASFLPL 403
Query: 211 AQRLIEEKGTDALAAALAQL 230
+ L +E A+AAA Q+
Sbjct: 404 VRELSDEYDPQAIAAAALQM 423
>gi|284048361|ref|YP_003398700.1| DEAD/DEAH box helicase [Acidaminococcus fermentans DSM 20731]
gi|283952582|gb|ADB47385.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
DSM 20731]
Length = 544
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 109/176 (61%), Gaps = 2/176 (1%)
Query: 53 KTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111
K I+F +TK+ DE+ +AL T +E LHGD+SQ+QR+R + FR G+ +LVATDVAA
Sbjct: 257 KMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMKKFRSGQVDILVATDVAA 316
Query: 112 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 171
RGLDI N+ ++++++P+D E++VHR GRTGRAG G A+ T + R ++ +ER +
Sbjct: 317 RGLDIDNITHVVNFDVPSDSESYVHRIGRTGRAGNTGVALTFITPREFRQLKLIERSIKT 376
Query: 172 KFEFVSPPVVEDVLESSAEQVVATLNGV-HPESVEFFTPTAQRLIEEKGTDALAAA 226
K + P VLE EQ+V+ + + + + + P + L ++ +AAA
Sbjct: 377 KIIRGTLPTDASVLERQREQIVSKMQTILEQDRYQDYLPIVETLEKDYDVQDIAAA 432
>gi|149194827|ref|ZP_01871921.1| DEAD/DEAH box helicase-like protein [Caminibacter mediatlanticus
TB-2]
gi|149134986|gb|EDM23468.1| DEAD/DEAH box helicase-like protein [Caminibacter mediatlanticus
TB-2]
Length = 460
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 112/196 (57%), Gaps = 10/196 (5%)
Query: 23 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 81
E IK Y ++ L LI Y K+IVF +TK+D D+++ L+ ++ LH
Sbjct: 207 ENIKEYFYVIDEFERKDALIRLID-YKNPTKSIVFCRTKKDVDDIAEFLSGAGFDAKGLH 265
Query: 82 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 141
GD+ Q +RE + GF+ + +LVATDVAARGLD+ NV + +Y LP DPE++VHR GRT
Sbjct: 266 GDMDQRKREEVIRGFKSDRIEILVATDVAARGLDVNNVSHVFNYHLPLDPESYVHRIGRT 325
Query: 142 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP 201
GRAGKEG AI + T + R + +++ K P + DV + ++++ L+ + P
Sbjct: 326 GRAGKEGMAISLVTPHEFRALNRIQK--ISKIILKEIPTLADVKDKEIQKIIDKLSNIDP 383
Query: 202 ESVEFFTPTAQRLIEE 217
TP + +IEE
Sbjct: 384 ------TPKSIEIIEE 393
>gi|291522717|emb|CBK81010.1| Superfamily II DNA and RNA helicases [Coprococcus catus GD/7]
Length = 526
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 117/214 (54%), Gaps = 11/214 (5%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ Y +K +LS L+ +Y ++VF TKR DE+ L +E LHGD
Sbjct: 218 IEQYYYEVRPKNKEEVLSRLLDIY-NPALSVVFCNTKRQVDELVEGLKGRGYFAEGLHGD 276
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
+ Q QR+R +NGFR G+ +LVATDVAARG+D+ +VD + +Y+LP D E +VHR GRTGR
Sbjct: 277 MKQQQRDRVMNGFRNGRTEILVATDVAARGIDVDDVDAVFNYDLPQDDEYYVHRIGRTGR 336
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 203
AGK G A T + ++ ++R K P + DV A+++ + G+ E
Sbjct: 337 AGKNGKAFTFITGREFYKLKDIQRYCRTKIIAKQVPSLNDVANVKADKIFEKVAGMIDE- 395
Query: 204 VEFFTPTAQRLIEEK------GTDALAAALAQLS 231
+ P R+IEEK T LAAA +++
Sbjct: 396 -DNLKPYI-RMIEEKLEKEDYTTLDLAAAFLRMA 427
>gi|227832855|ref|YP_002834562.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
700975]
gi|262182657|ref|ZP_06042078.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
700975]
gi|227453871|gb|ACP32624.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
700975]
Length = 669
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 111/183 (60%), Gaps = 5/183 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK ++V+ +L + A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 306 IVFCRTKHATEDVADSLKEAGYNAAAINGDIAQQQRERTVDQLKDGRLDILVATDVAARG 365
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + +++Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER +
Sbjct: 366 LDVDRITHVVNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNARL 425
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRL--IEEKGTDALAAALA-Q 229
E + P ++V E+ A++ + +FF + E D +AAALA Q
Sbjct: 426 EEMDLPTADEVNAKRKEKFFASIGASQQDKQFDFFRDMVREYSAAENVAMDDIAAALAVQ 485
Query: 230 LSG 232
L G
Sbjct: 486 LQG 488
>gi|221633115|ref|YP_002522340.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
gi|221156880|gb|ACM06007.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
Length = 534
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 100/153 (65%), Gaps = 1/153 (0%)
Query: 48 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 106
Y I+F +TK ADE++ L S+ A+EA+HGD+SQ R+R + FR G+ +L+A
Sbjct: 247 YEAPTSAIIFVRTKSGADELAHKLQSLGYAAEAIHGDLSQAMRDRAMQRFRAGQVDLLIA 306
Query: 107 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 166
TDVAARGLDIP V +I++++P+DPE++VHR GRTGRAG GTAI + +R +R++E
Sbjct: 307 TDVAARGLDIPAVSHVINFDIPSDPESYVHRIGRTGRAGATGTAITLIEPRERWLLRTIE 366
Query: 167 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV 199
R +G + P E++ E + A+L+ V
Sbjct: 367 RAIGQRLIPKRIPTREEIARRQRELLGASLSEV 399
>gi|296119482|ref|ZP_06838040.1| putative cold shock DEAD-box protein A [Corynebacterium
ammoniagenes DSM 20306]
gi|295967365|gb|EFG80632.1| putative cold shock DEAD-box protein A [Corynebacterium
ammoniagenes DSM 20306]
Length = 658
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 110/178 (61%), Gaps = 4/178 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK + +EV+ L + A++GDI+Q+QRERT++ + G+ +LVATDVAARG
Sbjct: 303 IVFCRTKHETEEVAEKLRDAGYNAAAINGDIAQNQRERTVDQLKDGRLDILVATDVAARG 362
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + ++++++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER +
Sbjct: 363 LDVDRITHVVNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNARL 422
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGT--DALAAALA 228
E + P V++V E + + V + +E F ++ E D +AAALA
Sbjct: 423 EEMELPTVDEVNAKRKENFASQITEVLGDGQMELFRGLVRKYSENNNVAMDDIAAALA 480
>gi|120600329|ref|YP_964903.1| DEAD/DEAH box helicase [Shewanella sp. W3-18-1]
gi|146291742|ref|YP_001182166.1| DEAD/DEAH box helicase [Shewanella putrefaciens CN-32]
gi|120560422|gb|ABM26349.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
gi|145563432|gb|ABP74367.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
CN-32]
Length = 640
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 121/222 (54%), Gaps = 12/222 (5%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 80
E I+ + + +K L ++ V G I+F +T+ E++ L + AS L
Sbjct: 216 VESIEQRFVQVSQHNKLEALVRVLEVENTEG-VIIFVRTRNSCVELAEKLEARGYASSPL 274
Query: 81 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 140
HGD++Q RER ++ ++GK +L+ATDVAARGLD+ + +++Y++P D E +VHR GR
Sbjct: 275 HGDMNQQARERAVDQLKRGKLDILIATDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGR 334
Query: 141 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATL 196
TGRAG+ G AIL TS + R +R++ER + + P E V E EQ+ T+
Sbjct: 335 TGRAGRTGMAILFVTSREMRMLRTIERSTNSRISPMKIPSPETVAERRLSRLGEQLAETI 394
Query: 197 NGVHPESVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 236
NG ++F +L + E TD LAAAL Q RP
Sbjct: 395 NG----DLDFMKEAVAQLCQQLEVDTDLLAAALLQQVQQERP 432
>gi|386312353|ref|YP_006008518.1| DEAD/DEAH box helicase [Shewanella putrefaciens 200]
gi|319424978|gb|ADV53052.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
Length = 635
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 121/222 (54%), Gaps = 12/222 (5%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 80
E I+ + + +K L ++ V G I+F +T+ E++ L + AS L
Sbjct: 216 VESIEQRFVQVSQHNKLEALVRVLEVENTEG-VIIFVRTRNSCVELAEKLEARGYASSPL 274
Query: 81 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 140
HGD++Q RER ++ ++GK +L+ATDVAARGLD+ + +++Y++P D E +VHR GR
Sbjct: 275 HGDMNQQARERAVDQLKRGKLDILIATDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGR 334
Query: 141 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATL 196
TGRAG+ G AIL TS + R +R++ER + + P E V E EQ+ T+
Sbjct: 335 TGRAGRTGMAILFVTSREMRMLRTIERSTNSRISPMKIPSPETVAERRLSRLGEQLAETI 394
Query: 197 NGVHPESVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 236
NG ++F +L + E TD LAAAL Q RP
Sbjct: 395 NG----DLDFMKEAVAQLCQQLEVDTDLLAAALLQQVQQERP 432
>gi|423206263|ref|ZP_17192819.1| hypothetical protein HMPREF1168_02454 [Aeromonas veronii AMC34]
gi|404621815|gb|EKB18680.1| hypothetical protein HMPREF1168_02454 [Aeromonas veronii AMC34]
Length = 633
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 123/231 (53%), Gaps = 19/231 (8%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKT-----------I 55
M +V + K + IK+ + + TAT+ R + ++ T +
Sbjct: 192 MPEQIRRVAQKHLKQPKEIKIASKTATATTIRQRYWQVTGLHKLDAMTRLLEVESYEALL 251
Query: 56 VFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 114
VF +TK A+E++ L + A EALHGDI Q RERT++ RQG+ +L+ATDV ARGL
Sbjct: 252 VFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIATDVVARGL 311
Query: 115 DIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 174
D+ + +++Y++P D E++VHR GRTGRAG++G AIL +RR +R++E E
Sbjct: 312 DVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAIEHATRQAIE 371
Query: 175 FVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 221
+ P ED+ L E++ T+ G E +E + LIEE D
Sbjct: 372 PMKMPSTEDINQHRLAKFKERIRETMMG---EELEIYHNLVNELIEEDSAD 419
>gi|334705332|ref|ZP_08521198.1| ATP-dependent RNA helicase [Aeromonas caviae Ae398]
Length = 613
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 123/231 (53%), Gaps = 19/231 (8%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKT-----------I 55
M +V + K + IK+ + + TAT+ R + ++ T +
Sbjct: 173 MPEQIRRVAQKHLKQPKEIKIASKTATATTIRQRYWQVTGLHKLDAMTRLLEVESYEALL 232
Query: 56 VFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 114
VF +TK A+E++ L + A EALHGDI Q RERT++ RQG+ +L+ATDV ARGL
Sbjct: 233 VFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIATDVVARGL 292
Query: 115 DIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 174
D+ + +++Y++P D E++VHR GRTGRAG++G AIL +RR +R++E E
Sbjct: 293 DVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAIEHATRQAIE 352
Query: 175 FVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 221
+ P ED+ L E++ T+ G E +E + LIEE D
Sbjct: 353 PMKMPSTEDINQHRLAKFKERIRETMMG---EELEIYHNLVNELIEEDSAD 400
>gi|32475237|ref|NP_868231.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
gi|32445778|emb|CAD78509.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
Length = 931
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 125/219 (57%), Gaps = 5/219 (2%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 80
A ++ A+ + K L+ ++ V G IVFT+TK V+ L+ ++ AL
Sbjct: 515 AASVRQRALFVSPRDKIDALTRILEVEETDG-VIVFTKTKDSTLSVAEKLSQQGFSAIAL 573
Query: 81 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 140
+GD+ Q RERT++ ++G+ VLVATDVAARGLD+P + + +++LP+D E++VHR GR
Sbjct: 574 NGDMPQKVRERTIDQLKRGQLDVLVATDVAARGLDVPRISHVFNFDLPHDSESYVHRIGR 633
Query: 141 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 200
TGRAG+ G AI+ T++QRR +R +E E + P V D+ E+ + + V
Sbjct: 634 TGRAGRSGQAIIFLTNAQRRQLRFIENTTKQPIEIIDIPTVADINEARVRRFKQRITDVS 693
Query: 201 P-ESVEFFTPTAQRLIEEKG--TDALAAALAQLSGFSRP 236
+ + + + EE G + +AAALA++S RP
Sbjct: 694 ADQDLTVYKDMIAQYAEESGKPMEMIAAALAEMSQNGRP 732
>gi|126175951|ref|YP_001052100.1| DEAD/DEAH box helicase [Shewanella baltica OS155]
gi|152999102|ref|YP_001364783.1| DEAD/DEAH box helicase [Shewanella baltica OS185]
gi|217971789|ref|YP_002356540.1| DEAD/DEAH box helicase [Shewanella baltica OS223]
gi|386342704|ref|YP_006039070.1| DEAD/DEAH box helicase [Shewanella baltica OS117]
gi|125999156|gb|ABN63231.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
gi|151363720|gb|ABS06720.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
gi|217496924|gb|ACK45117.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
gi|334865105|gb|AEH15576.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS117]
Length = 640
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 121/222 (54%), Gaps = 12/222 (5%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 80
E I+ + + +K L ++ V G I+F +T+ E++ L + AS L
Sbjct: 216 VESIEQRFVQVSQHNKLEALVRVLEVENTEG-VIIFVRTRNSCVELAEKLEARGYASSPL 274
Query: 81 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 140
HGD++Q RER ++ ++GK +L+ATDVAARGLD+ + +++Y++P D E +VHR GR
Sbjct: 275 HGDMNQQARERAVDQLKRGKLDILIATDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGR 334
Query: 141 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATL 196
TGRAG+ G AIL TS + R +R++ER + + P E V E EQ+ T+
Sbjct: 335 TGRAGRTGMAILFVTSREMRMLRTIERSTNSRISPMKIPSPETVAERRLSRLGEQLAETI 394
Query: 197 NGVHPESVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 236
NG ++F +L + E TD LAAAL Q RP
Sbjct: 395 NG----DLDFMKEAVAQLCQQLEVDTDLLAAALLQQVQQERP 432
>gi|429725994|ref|ZP_19260805.1| DEAD/DEAH box helicase [Prevotella sp. oral taxon 473 str. F0040]
gi|429148326|gb|EKX91335.1| DEAD/DEAH box helicase [Prevotella sp. oral taxon 473 str. F0040]
Length = 712
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 129/463 (27%), Positives = 207/463 (44%), Gaps = 86/463 (18%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+++E AE + A K L ++ Y + I+F +T+ + EV+ L
Sbjct: 275 VGSRNEG-AEHVNHTYYLVKAQDKYAALKRIVDYYPRI-YGIIFCRTRLETQEVANQLIK 332
Query: 74 I-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++EALHGD++Q QR+ T+ FRQ + +LVATDVAARGLD+ + +I+Y LP+D E
Sbjct: 333 DGYSAEALHGDLAQAQRDLTMQKFRQHRTQLLVATDVAARGLDVNELTHVINYGLPDDVE 392
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+ HRSGRTGRAGK GT+I + ++ VR +ER +G KFE P +++ +V
Sbjct: 393 NYTHRSGRTGRAGKRGTSISIIHIREKGKVRLIERVIGKKFEVGILPEPQEICSKQLYKV 452
Query: 193 VATLNG--VHPESVEFFTPTAQRLIEEKGTDALAAALAQ------LSGFSRPP------- 237
+ L V E + F +E + L L Q LS ++ P
Sbjct: 453 IDELEHTEVDEEQIAPFLLEVMHKLEWLSKEELVKRLVQNEFGRFLSYYANAPEIVQPTD 512
Query: 238 ---------SSR------------SLINHEQGWVTLQLT---RDSAFSRGFMSARSVMGF 273
+ R S E+G+ L L +D+ F+R ++
Sbjct: 513 RPDKKGEAAAERRAQRKERAKQGGSTQEAEEGYKRLFLNFGKKDNFFAREIIN------- 565
Query: 274 LSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD 333
L + Y EIG+I ++ + F++PEE A EL+ ++ +K+ + + D
Sbjct: 566 LVNRYVKGKVEIGRIDLLP----TCSFFEVPEEDA-ELVKAKMAK----AKVGERRVVVD 616
Query: 334 DG------PSSDNYGR----------FSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRG 377
D PS GR + DR +R R+S G + +G DR G
Sbjct: 617 DADRSDADPSQRLRGREGKRGKSERSYEKSDR-NRDKSDRYSDRGTKSYGKGSRKSDRGG 675
Query: 378 FRSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWL 420
+ + S+ + G+ S S N + S++ DDW+
Sbjct: 676 YDAKPSYKKGKKGGYDS--------SSNRQDSQYKK---DDWM 707
>gi|307243618|ref|ZP_07525761.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
stomatis DSM 17678]
gi|306492987|gb|EFM64997.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
stomatis DSM 17678]
Length = 538
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 24 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 82
IK Y I T ++K +L+ L+ VY T+VFT TK+ ADE+ +L + +++LHG
Sbjct: 217 NIKQYYIETRKSNKLEVLTRLLDVY-NPKLTVVFTNTKKGADELVSSLQARGYGADSLHG 275
Query: 83 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 142
D+ Q QR+ ++ FR G +LVATDVAARG+DI +V+ +I+YELP D E +VHR GRTG
Sbjct: 276 DLKQVQRDIVMDKFRAGTIDILVATDVAARGIDIDDVECVINYELPQDDEYYVHRIGRTG 335
Query: 143 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 191
RAG+EG A + R ++ +ER K P V DV E Q
Sbjct: 336 RAGREGIAFSFAFGREMRKLKDIERYTKSKIVKHDIPSVNDVEEKKVSQ 384
>gi|160873699|ref|YP_001553015.1| DEAD/DEAH box helicase [Shewanella baltica OS195]
gi|373951054|ref|ZP_09611015.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
gi|378706943|ref|YP_005271837.1| DEAD/DEAH box helicase [Shewanella baltica OS678]
gi|386323127|ref|YP_006019244.1| DEAD/DEAH box helicase [Shewanella baltica BA175]
gi|418025621|ref|ZP_12664598.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|160859221|gb|ABX47755.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
gi|315265932|gb|ADT92785.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
gi|333817272|gb|AEG09938.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
gi|353534882|gb|EHC04447.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|373887654|gb|EHQ16546.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
Length = 640
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 121/222 (54%), Gaps = 12/222 (5%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 80
E I+ + + +K L ++ V G I+F +T+ E++ L + AS L
Sbjct: 216 VESIEQRFVQVSQHNKLEALVRVLEVENTEG-VIIFVRTRNSCVELAEKLEARGYASSPL 274
Query: 81 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 140
HGD++Q RER ++ ++GK +L+ATDVAARGLD+ + +++Y++P D E +VHR GR
Sbjct: 275 HGDMNQQARERAVDQLKRGKLDILIATDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGR 334
Query: 141 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATL 196
TGRAG+ G AIL TS + R +R++ER + + P E V E EQ+ T+
Sbjct: 335 TGRAGRTGMAILFVTSREMRMLRTIERSTNSRISPMKIPSPETVAERRLSRLGEQLAETI 394
Query: 197 NGVHPESVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 236
NG ++F +L + E TD LAAAL Q RP
Sbjct: 395 NG----DLDFMKEAVAQLCQQLEVDTDLLAAALLQQVQQERP 432
>gi|21226849|ref|NP_632771.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
gi|20905151|gb|AAM30443.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
Length = 587
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 112/179 (62%), Gaps = 2/179 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VF +TK D +++ L+ ++ALHGD+SQ +RE+ LN FR+ K +L ATDVAARG
Sbjct: 248 LVFCRTKTDTSQLAQKLSDRGYLADALHGDLSQQEREKILNKFRKQKINILAATDVAARG 307
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+DI ++ +I+Y LP DPE++VHR GRTGRAGK+GTAI TS++ R + +++ +
Sbjct: 308 IDIMDLTHVINYALPQDPESYVHRIGRTGRAGKQGTAITFVTSTEFRRLTYIKKTSKSEM 367
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 231
+ P ++DV+++ +V L + E +Q+L+EE + + AAL + +
Sbjct: 368 KKGHIPEIKDVIKAKRARVRTELEETIKTEEYGDCLEMSQKLLEEYPAEKILAALLKFT 426
>gi|376260079|ref|YP_005146799.1| DNA/RNA helicase [Clostridium sp. BNL1100]
gi|373944073|gb|AEY64994.1| DNA/RNA helicase, superfamily II [Clostridium sp. BNL1100]
Length = 564
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 125/222 (56%), Gaps = 15/222 (6%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ Y + ++K +LS LI ++VF TK+ DE++ +L S ++EALHGD
Sbjct: 218 IEQYYLEVKESAKLEVLSRLIDT-NDIKLSLVFCNTKKRVDELTASLQSRGFSAEALHGD 276
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
+ Q R++ ++ FR+G F +L+ATDVAARG+D+ +V+ + +Y+LPND E +VHR GRTGR
Sbjct: 277 MRQEHRDKVMSLFRKGNFDILIATDVAARGIDVDDVEAVFNYDLPNDEEYYVHRIGRTGR 336
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN-GVHPE 202
AG+ G A + + +R ++R + PP + +V E ++ TL + E
Sbjct: 337 AGRTGKAFTFISGREMYKLRDIQRYTKSTIVPMKPPSLNEVEEKKMLNILKTLKENLKDE 396
Query: 203 SVEFFTPTAQRLI-------EEKGTD-----ALAAALAQLSG 232
S+ F +R I EE+G + +AAAL ++ G
Sbjct: 397 SISKFVSHIERFIDTINNESEEQGENFVTSLDIAAALLKMYG 438
>gi|172039349|ref|YP_001805850.1| ATP-dependent RNA helicase [Cyanothece sp. ATCC 51142]
gi|354552384|ref|ZP_08971692.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. ATCC 51472]
gi|171700803|gb|ACB53784.1| ATP-dependent RNA helicase [Cyanothece sp. ATCC 51142]
gi|353555706|gb|EHC25094.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. ATCC 51472]
Length = 480
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 117/200 (58%), Gaps = 9/200 (4%)
Query: 36 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIAS-EALHGDISQHQRERTLN 94
SKR L ++ + I+F +TK+ A +++ L I S + HG++SQ QRER ++
Sbjct: 228 SKRKALQPILEI-EDPESAIIFVRTKQTASDLTSKLQEIGHSVDEYHGNLSQSQRERLVH 286
Query: 95 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMF 154
FR+GK ++VATD+AARGLD+ N+ +I+Y+LP++ ET++HR GRTGRAGK GTAI +
Sbjct: 287 RFREGKIKLVVATDIAARGLDVENLSHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLV 346
Query: 155 TSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPT 210
RR VR +E+ + K E P V LE ++ +L G E + F P
Sbjct: 347 EPIDRRMVRQIEKRLRQKLETCKLPSRSQVEAKRLEKLQNEIKESLAG---ERMASFLPL 403
Query: 211 AQRLIEEKGTDALAAALAQL 230
+ L +E A+AAA Q+
Sbjct: 404 VRELSDEYDPQAIAAAALQM 423
>gi|406677544|ref|ZP_11084726.1| hypothetical protein HMPREF1170_02934 [Aeromonas veronii AMC35]
gi|404624557|gb|EKB21391.1| hypothetical protein HMPREF1170_02934 [Aeromonas veronii AMC35]
Length = 633
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 123/231 (53%), Gaps = 19/231 (8%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKT-----------I 55
M +V + K + IK+ + + TAT+ R + ++ T +
Sbjct: 192 MPEQIRRVAQKHLKQPKEIKIASKTATATTIRQRYWQVTGLHKLDAMTRLLEVESYEALL 251
Query: 56 VFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 114
VF +TK A+E++ L + A EALHGDI Q RERT++ RQG+ +L+ATDV ARGL
Sbjct: 252 VFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIATDVVARGL 311
Query: 115 DIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 174
D+ + +++Y++P D E++VHR GRTGRAG++G AIL +RR +R++E E
Sbjct: 312 DVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAIEHATRQAIE 371
Query: 175 FVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 221
+ P ED+ L E++ T+ G E +E + LIEE D
Sbjct: 372 PMKMPSTEDINQHRLAKFKERIRETMMG---EELEIYHNLVNELIEEDSAD 419
>gi|229028084|ref|ZP_04184235.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271]
gi|228733237|gb|EEL84068.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271]
Length = 527
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HGD
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGK+G A+L T + ++++ER K + + P +++ LE + L + E
Sbjct: 334 AGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNE 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 394 NLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|347529383|ref|YP_004836131.1| putative helicase [Sphingobium sp. SYK-6]
gi|345138065|dbj|BAK67674.1| putative helicase [Sphingobium sp. SYK-6]
Length = 588
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 131/250 (52%), Gaps = 27/250 (10%)
Query: 79 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS 138
AL G+ SQ++R + L R + V VATDVAARG+D+PN+ L+IH ++P D ET HRS
Sbjct: 272 ALSGEHSQNERNQALQALRDRRARVCVATDVAARGIDLPNLSLVIHVDIPRDAETLQHRS 331
Query: 139 GRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG 198
GRTGRAGK+GTA+L+ +RR V S+ R E+VSPP +D+ + +E+++ TL
Sbjct: 332 GRTGRAGKKGTAVLIVPYQRRRRVESMLRGARIPAEWVSPPSADDIRRADSERLLTTL-- 389
Query: 199 VHP-ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHE----------- 246
+ P E E A RL+ E+ +AAAL + R P+ L+ +
Sbjct: 390 LAPVELDEQDHKLADRLLAERSAHDIAAALVH-AHRVRLPAPEDLLGSDAPQEARQPRAG 448
Query: 247 ---QGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDL 303
W L + R R AR ++ L + +EIG I I A + +F++
Sbjct: 449 FEGSAWFRLNIGR-----RQNAEARWILPLLCRRGHVSRNEIGAIRIAASE----TLFEV 499
Query: 304 PEEIAKELLN 313
P +A L+
Sbjct: 500 PGALASRFLD 509
>gi|440713990|ref|ZP_20894578.1| cold-shock DEAD box protein A [Rhodopirellula baltica SWK14]
gi|436441186|gb|ELP34452.1| cold-shock DEAD box protein A [Rhodopirellula baltica SWK14]
Length = 895
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 125/219 (57%), Gaps = 5/219 (2%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 80
A ++ A+ + K L+ ++ V G IVFT+TK V+ L+ ++ AL
Sbjct: 479 AASVRQRALFVSPRDKIDALTRILEVEETDG-VIVFTKTKDSTLSVAEKLSQQGFSAIAL 537
Query: 81 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 140
+GD+ Q RERT++ ++G+ VLVATDVAARGLD+P + + +++LP+D E++VHR GR
Sbjct: 538 NGDMPQKVRERTIDQLKRGQLDVLVATDVAARGLDVPRISHVFNFDLPHDSESYVHRIGR 597
Query: 141 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 200
TGRAG+ G AI+ T++QRR +R +E E + P V D+ E+ + + V
Sbjct: 598 TGRAGRSGQAIIFLTNAQRRQLRFIENTTKQPIEIIDIPTVADINEARVRRFKQRITDVS 657
Query: 201 P-ESVEFFTPTAQRLIEEKG--TDALAAALAQLSGFSRP 236
+ + + + EE G + +AAALA++S RP
Sbjct: 658 ADQDLTVYKDMIAQYAEESGKPMEMIAAALAEMSQNGRP 696
>gi|330829254|ref|YP_004392206.1| DEAD/DEAH box helicase domain-containing protein [Aeromonas veronii
B565]
gi|423201948|ref|ZP_17188527.1| hypothetical protein HMPREF1167_02110 [Aeromonas veronii AER39]
gi|423210052|ref|ZP_17196606.1| hypothetical protein HMPREF1169_02124 [Aeromonas veronii AER397]
gi|328804390|gb|AEB49589.1| DEAD/DEAH box helicase domain protein [Aeromonas veronii B565]
gi|404615658|gb|EKB12619.1| hypothetical protein HMPREF1167_02110 [Aeromonas veronii AER39]
gi|404615940|gb|EKB12898.1| hypothetical protein HMPREF1169_02124 [Aeromonas veronii AER397]
Length = 633
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 123/231 (53%), Gaps = 19/231 (8%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKT-----------I 55
M +V + K + IK+ + + TAT+ R + ++ T +
Sbjct: 192 MPEQIRRVAQKHLKQPKEIKIASKTATATTIRQRYWQVTGLHKLDAMTRLLEVESYEALL 251
Query: 56 VFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 114
VF +TK A+E++ L + A EALHGDI Q RERT++ RQG+ +L+ATDV ARGL
Sbjct: 252 VFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIATDVVARGL 311
Query: 115 DIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 174
D+ + +++Y++P D E++VHR GRTGRAG++G AIL +RR +R++E E
Sbjct: 312 DVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAIEHATRQAIE 371
Query: 175 FVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 221
+ P ED+ L E++ T+ G E +E + LIEE D
Sbjct: 372 PMKMPSTEDINQHRLAKFKERIRETMMG---EELEIYHNLVNELIEEDSAD 419
>gi|421641007|ref|ZP_16081575.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus anthracis str.
BF1]
gi|403391874|gb|EJY89142.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus anthracis str.
BF1]
Length = 492
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 124/218 (56%), Gaps = 5/218 (2%)
Query: 24 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 82
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 178 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 236
Query: 83 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 142
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 237 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 296
Query: 143 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 201
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 297 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIEN 356
Query: 202 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 357 ENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 392
>gi|421610904|ref|ZP_16052069.1| cold-shock deAd box protein a [Rhodopirellula baltica SH28]
gi|408498358|gb|EKK02852.1| cold-shock deAd box protein a [Rhodopirellula baltica SH28]
Length = 931
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 125/219 (57%), Gaps = 5/219 (2%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 80
A ++ A+ + K L+ ++ V G IVFT+TK V+ L+ ++ AL
Sbjct: 515 AASVRQRALFVSPRDKIDALTRILEVEETDG-VIVFTKTKDSTLSVAEKLSQQGFSAIAL 573
Query: 81 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 140
+GD+ Q RERT++ ++G+ VLVATDVAARGLD+P + + +++LP+D E++VHR GR
Sbjct: 574 NGDMPQKVRERTIDQLKRGQLDVLVATDVAARGLDVPRISHVFNFDLPHDSESYVHRIGR 633
Query: 141 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 200
TGRAG+ G AI+ T++QRR +R +E E + P V D+ E+ + + V
Sbjct: 634 TGRAGRSGQAIIFLTNAQRRQLRFIENTTKQPIEIIDIPTVADINEARVRRFKQRITDVS 693
Query: 201 P-ESVEFFTPTAQRLIEEKG--TDALAAALAQLSGFSRP 236
+ + + + EE G + +AAALA++S RP
Sbjct: 694 ADQDLTVYKDMIAQYAEESGKPMEMIAAALAEMSQNGRP 732
>gi|227542566|ref|ZP_03972615.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51866]
gi|227181764|gb|EEI62736.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51866]
Length = 718
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 97/138 (70%), Gaps = 1/138 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK + +E++ L + +++A++GDI+Q QRERT++ R G+ +LVATDVAARG
Sbjct: 353 IIFVRTKYETEELAEKLRARGFSAQAINGDIAQQQRERTVDQLRDGRLDILVATDVAARG 412
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + +++Y++P+D E+++HR GRTGRAG+ G AIL T +RR +RS+ER
Sbjct: 413 LDVDRISHVLNYDIPHDTESYIHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNATL 472
Query: 174 EFVSPPVVEDVLESSAEQ 191
E + P V++V ES E+
Sbjct: 473 EEMQLPTVDEVNESRKEK 490
>gi|227487924|ref|ZP_03918240.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51867]
gi|227092130|gb|EEI27442.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51867]
Length = 718
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 97/138 (70%), Gaps = 1/138 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK + +E++ L + +++A++GDI+Q QRERT++ R G+ +LVATDVAARG
Sbjct: 353 IIFVRTKYETEELAEKLRARGFSAQAINGDIAQQQRERTVDQLRDGRLDILVATDVAARG 412
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + +++Y++P+D E+++HR GRTGRAG+ G AIL T +RR +RS+ER
Sbjct: 413 LDVDRISHVLNYDIPHDTESYIHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNATL 472
Query: 174 EFVSPPVVEDVLESSAEQ 191
E + P V++V ES E+
Sbjct: 473 EEMQLPTVDEVNESRKEK 490
>gi|218290125|ref|ZP_03494287.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius LAA1]
gi|218239834|gb|EED07023.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius LAA1]
Length = 465
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 111/179 (62%), Gaps = 2/179 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TKR D++ AL + ++ LHGD+SQ QR+R + FR+ + +LVATDVAARG
Sbjct: 259 IIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIELLVATDVAARG 318
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ +V +I+Y++P DPE++VHR GRTGRAGK G AI + T + + ++ +ER++ K
Sbjct: 319 LDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYKLLKQIEREIKQKI 378
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALAAALAQLS 231
P +EDV E AE + + V E + + L++E +A+AL +L+
Sbjct: 379 TVREVPSLEDVAERQAEMWRSKIVDVIREGGLAPYRAILSGLVDEHDPIDIASALLKLA 437
>gi|229083524|ref|ZP_04215862.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44]
gi|228699778|gb|EEL52425.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44]
Length = 527
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 125/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HGD
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGK+G A+L T + ++++ER K + ++ P +++ LE + L + +
Sbjct: 334 AGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMNAPTLDEALEGQQRLIAEKLQSTIESD 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 394 NLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|51892785|ref|YP_075476.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
gi|51856474|dbj|BAD40632.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
Length = 526
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 110/185 (59%), Gaps = 3/185 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I F +TK+ DE+ AL + +E +HGD++Q QR R ++ F++G +LVATDVAARG
Sbjct: 248 ICFCRTKKGVDELVEALQARGYQAEGIHGDMNQAQRNRVMSRFKEGYIELLVATDVAARG 307
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI +V + +Y++P DPE++VHR GRTGRAG+ GTAI + T + +R +ER + +
Sbjct: 308 LDISDVTHVFNYDIPQDPESYVHRIGRTGRAGRTGTAITLVTPREFPQLRLIERVIKARL 367
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPESV--EFFTPTAQRLIEEKGTDALAAALAQLS 231
+ P + DV E EQ+ L + E EF L E +D +AAAL +S
Sbjct: 368 QRRPVPTLSDVAEKQREQLKERLIKILEEDKLGEFRELAEDLLAEYDPSDLVAAALKLVS 427
Query: 232 GFSRP 236
G +P
Sbjct: 428 GEGKP 432
>gi|163758551|ref|ZP_02165638.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
gi|162283841|gb|EDQ34125.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
Length = 508
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 86/131 (65%), Gaps = 1/131 (0%)
Query: 50 KGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATD 108
KG + IVFT+TKR AD+ + L I + A+HG+ SQ QRER L GFR G VL+ATD
Sbjct: 251 KGERVIVFTRTKRGADKAAKRLEGDGINAAAIHGNKSQGQRERALAGFRAGTVPVLIATD 310
Query: 109 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 168
+AARG+D+P V L+++YELPN PE +VHR GRT RAG EGTA+ +R +R +E+
Sbjct: 311 IAARGIDVPGVSLVVNYELPNVPEVYVHRIGRTARAGAEGTAVTFCAPDERSLLRDIEKM 370
Query: 169 VGCKFEFVSPP 179
+ + P
Sbjct: 371 LKVAIPVENAP 381
>gi|358446581|ref|ZP_09157126.1| putative ATP-dependent RNA helicase [Corynebacterium casei UCMA
3821]
gi|356607542|emb|CCE55468.1| putative ATP-dependent RNA helicase [Corynebacterium casei UCMA
3821]
Length = 675
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 110/178 (61%), Gaps = 4/178 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK + +EV+ L + A++GDI+Q+QRERT++ + G+ +LVATDVAARG
Sbjct: 303 IVFCRTKHETEEVAEKLRDAGYNAAAINGDIAQNQRERTVDQLKDGRLDILVATDVAARG 362
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + ++++++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER +
Sbjct: 363 LDVDRITHVVNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNARL 422
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGT--DALAAALA 228
E + P V++V E + + V + +E F ++ E D +AAALA
Sbjct: 423 EEMELPTVDEVNAKRKENFASQITEVLGDGQMELFRGLVRKYSETNNVAMDDIAAALA 480
>gi|393720957|ref|ZP_10340884.1| DEAD/DEAH box helicase [Sphingomonas echinoides ATCC 14820]
Length = 570
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/303 (30%), Positives = 153/303 (50%), Gaps = 25/303 (8%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I A++ + +L+ ++ + I+F T+ + + L A+ AL G+
Sbjct: 219 ISYQAVTVAPADIENAVVNLLRLH-EAETAILFCATRDNVRHLHAGLIERGFAAVALSGE 277
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
SQ++R + R + V VATDVAARGLD+P++ L+IH ELP D ET HRSGRTGR
Sbjct: 278 HSQNERNSAMQALRDKRARVCVATDVAARGLDLPSLSLVIHVELPRDAETLQHRSGRTGR 337
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 203
AGK+GTAIL+ ++R V + R E+ + P V+D+ ++ E+++A L E
Sbjct: 338 AGKKGTAILIVPYQRKRRVEMMLRGARIAVEWKNAPTVDDIRKADRERLLAMLM----EP 393
Query: 204 VEFFT---PTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLI-----------NHEQGW 249
VE A +L+E+K + +AAAL Q S S+ P+ ++ +H +G+
Sbjct: 394 VEIEDDDRELAAKLLEQKSPEEIAAALVQ-SLRSKMPAPEEMLSQSSEKPAGKEHHREGF 452
Query: 250 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAK 309
++ R R R ++ + +E+G I I A++ +F +P IA
Sbjct: 453 DDVKWFRMDIGRRQNADPRWILPLICRRGHITKNEVGAIRIAANE----TMFQVPSAIAA 508
Query: 310 ELL 312
+ +
Sbjct: 509 KFM 511
>gi|153955940|ref|YP_001396705.1| RNA helicase [Clostridium kluyveri DSM 555]
gi|219856282|ref|YP_002473404.1| hypothetical protein CKR_2939 [Clostridium kluyveri NBRC 12016]
gi|146348798|gb|EDK35334.1| Predicted RNA helicase [Clostridium kluyveri DSM 555]
gi|219570006|dbj|BAH07990.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 524
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 142/268 (52%), Gaps = 19/268 (7%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TKR DE+ ++ + E +HGD+ Q+QR TL F++G LVATDVAARG
Sbjct: 247 IIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLDFLVATDVAARG 306
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ NV +I+Y+LP D E++VHR GRTGRA KEG A + T + ++ +E+ K
Sbjct: 307 IDVENVSHVINYDLPQDTESYVHRIGRTGRANKEGIAYSLVTPREYILLKQIEKFTKSKI 366
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ P ++++ E+ + + + V E + + F P A L EE +AA+L ++
Sbjct: 367 KRKDIPTIDEIFEAKYKNIEEKIKKVISENNYKNFIPIATELDEEYNLVDVAASLMKII- 425
Query: 233 FSRPPS---SRSLINHEQGWVTLQLTRDSAFSRGFM---SARSVMGFLSDVYPTAADEIG 286
F + S + I E V L FS G M + R ++ F+++ A EIG
Sbjct: 426 FDKELSFDYKENSIGIEDNNVRL------FFSIGRMDNITPRKLIKFINETSSVEAYEIG 479
Query: 287 KIHIIADDRVQGAVFDLPEEIAKELLNK 314
I I+ + ++PE +A +L K
Sbjct: 480 DIDILN----KFTFINVPERVASIILKK 503
>gi|228950768|ref|ZP_04112897.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229067991|ref|ZP_04201304.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185]
gi|229077588|ref|ZP_04210230.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2]
gi|229176827|ref|ZP_04304229.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W]
gi|423422457|ref|ZP_17399488.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3X2-2]
gi|423433901|ref|ZP_17410882.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus
BAG4X12-1]
gi|423507747|ref|ZP_17484314.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HD73]
gi|449086891|ref|YP_007419332.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar kurstaki str. HD73]
gi|228606719|gb|EEK64138.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W]
gi|228705727|gb|EEL58071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2]
gi|228715129|gb|EEL66992.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185]
gi|228808908|gb|EEM55398.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|401119847|gb|EJQ27653.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3X2-2]
gi|401128051|gb|EJQ35755.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus
BAG4X12-1]
gi|402443146|gb|EJV75059.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HD73]
gi|449020648|gb|AGE75811.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar kurstaki str. HD73]
Length = 525
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 124/218 (56%), Gaps = 5/218 (2%)
Query: 24 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 82
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 83 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 142
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 143 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 201
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 202 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|206972279|ref|ZP_03233226.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH1134]
gi|218235804|ref|YP_002365074.1| DEAD/DEAH box helicase [Bacillus cereus B4264]
gi|228919172|ref|ZP_04082546.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|229148635|ref|ZP_04276889.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550]
gi|365163836|ref|ZP_09359936.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus sp.
7_6_55CFAA_CT2]
gi|423415878|ref|ZP_17392998.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3O-2]
gi|423428328|ref|ZP_17405332.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG4O-1]
gi|423578634|ref|ZP_17554745.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD014]
gi|423638228|ref|ZP_17613880.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD156]
gi|206732853|gb|EDZ50028.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH1134]
gi|218163761|gb|ACK63753.1| DEAD/DEAH box helicase [Bacillus cereus B4264]
gi|228634893|gb|EEK91468.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550]
gi|228840483|gb|EEM85750.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|363614642|gb|EHL66125.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus sp.
7_6_55CFAA_CT2]
gi|401094716|gb|EJQ02789.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3O-2]
gi|401126650|gb|EJQ34386.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG4O-1]
gi|401220492|gb|EJR27125.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD014]
gi|401271731|gb|EJR77736.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD156]
Length = 533
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 124/218 (56%), Gaps = 5/218 (2%)
Query: 24 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 82
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 83 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 142
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 143 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 201
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 202 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|390947284|ref|YP_006411044.1| DNA/RNA helicase [Alistipes finegoldii DSM 17242]
gi|390423853|gb|AFL78359.1| DNA/RNA helicase, superfamily II [Alistipes finegoldii DSM 17242]
Length = 653
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 109/179 (60%), Gaps = 2/179 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK ADE + L + A+E LHGD+SQ QRE+ L FR +LVATDVAARG
Sbjct: 248 IIFARTKIGADETASRLAARGYAAEVLHGDVSQAQREKILRKFRDRSVNILVATDVAARG 307
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ N+ +I+Y LP D E++VHR GRTGRAGK+GTAI + S+ R + +L RD+ +
Sbjct: 308 IDVGNLTHVINYSLPQDSESYVHRIGRTGRAGKQGTAITFVSPSEFRGLNNLMRDIKVEI 367
Query: 174 EFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 231
+ + P +D++E ++ + V ES + + A+ L+ E D AL +L+
Sbjct: 368 KRETLPSPQDIVEMKRLKIKDEMQEIVENESYDGYREFAEELLAEYTPDVALGALLRLA 426
>gi|258511452|ref|YP_003184886.1| DEAD/DEAH box helicase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257478178|gb|ACV58497.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 541
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 111/179 (62%), Gaps = 2/179 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TKR D++ AL + ++ LHGD+SQ QR+R + FR+ + +LVATDVAARG
Sbjct: 258 IIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIELLVATDVAARG 317
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ +V +I+Y++P DPE++VHR GRTGRAGK G AI + T + + ++ +ER++ K
Sbjct: 318 LDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYKLLKQIEREIKQKI 377
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALAAALAQLS 231
P +EDV E AE + + V E + + L++E +A+AL +L+
Sbjct: 378 TVREVPSLEDVAERQAEMWRSKIVDVIREGGLAPYRAILSGLVDEHDPIDIASALLKLA 436
>gi|423614480|ref|ZP_17590337.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD107]
gi|401237929|gb|EJR44375.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD107]
Length = 533
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HGD
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGK+G A+L T + ++++ER K + + P +++ LE + L + E
Sbjct: 334 AGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNE 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 394 NLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|375011356|ref|YP_004988344.1| DNA/RNA helicase [Owenweeksia hongkongensis DSM 17368]
gi|359347280|gb|AEV31699.1| DNA/RNA helicase, superfamily II [Owenweeksia hongkongensis DSM
17368]
Length = 610
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 89/131 (67%), Gaps = 1/131 (0%)
Query: 55 IVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VFT+TKRDA +V+ L S A+E LHGD+SQ QR+ + FR G +L+ATDVAARG
Sbjct: 272 VVFTRTKRDAQKVAEDLVESGYAAEPLHGDLSQAQRDAVMRRFRAGTLQMLIATDVAARG 331
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ N+ ++H+ LP+DPE + HRSGRT RAGK+G ++ + T R V+ LE +G KF
Sbjct: 332 IDVDNLTHVVHFALPDDPEYYTHRSGRTARAGKKGVSLSLITKGDMRRVKYLESKLGIKF 391
Query: 174 EFVSPPVVEDV 184
E P + ++
Sbjct: 392 EKALIPEIAEI 402
>gi|303277565|ref|XP_003058076.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460733|gb|EEH58027.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 748
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 112/346 (32%), Positives = 174/346 (50%), Gaps = 31/346 (8%)
Query: 5 FVMFSHST--QVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTK 61
F+ H T VG++ +K + + ++ + + ++ DLI G G+ IVF TK
Sbjct: 334 FLQPDHVTVDLVGDEKQKASAAVTHMLLNCQWSERTELVCDLIRAKVPGDGRVIVFCDTK 393
Query: 62 RDADEVSLALTSII--ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 119
RD E+ AL + ++ALHGD++Q QRE L GFR KF LVATDVAARGLDI V
Sbjct: 394 RDCGELQEALQKELEKGAKALHGDVNQAQREVVLAGFRANKFQTLVATDVAARGLDISGV 453
Query: 120 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 179
+L++ E P +PET++HRSGRTGR G G + + T + ++ER G KF+ ++PP
Sbjct: 454 ELVVQCEPPKEPETYIHRSGRTGRGGATGECVTLCTPRNEWAIPNIERKGGFKFQRIAPP 513
Query: 180 VVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIE------EKGTDA--LAAALAQLS 231
++ ++A+ V+A + V + + F A+ L+E ++G D + AA
Sbjct: 514 QPAEMAAAAAKIVIAQVRAVAKGAAKMFMDAAKELLEGGAGEHDEGADPTEMLAAALAKL 573
Query: 232 GFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHII 291
+RSL+ G TL + + + V FL + +I ++ +
Sbjct: 574 AGHGELRTRSLLTSHTGQTTLLFA--AGGTTEIRTPTYVWNFLRQRLDESDLQIRRLTLC 631
Query: 292 ADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPS 337
AD + GAVFD+P E+A K T L Q+ GP+
Sbjct: 632 ADSK--GAVFDVPSELA--------------DKFTALSENQESGPT 661
>gi|85057334|ref|YP_456250.1| superfamily II DNA/RNA helicase [Aster yellows witches'-broom
phytoplasma AYWB]
gi|84789439|gb|ABC65171.1| superfamily II DNA and RNA helicase [Aster yellows witches'-broom
phytoplasma AYWB]
Length = 547
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 111/179 (62%), Gaps = 3/179 (1%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
TI+F TK+D DE++ L ++A+HGD+ Q+QR+ +N FR+GK +L+ATDVAAR
Sbjct: 245 TILFANTKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILIATDVAAR 304
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLDI ++ ++I+Y+LP++ E +VHR GRTGRAGK+G A + + + ++ LE + K
Sbjct: 305 GLDISDIKMVINYDLPHEDEVYVHRIGRTGRAGKKGLAYSLISPRKVSQLKKLEYYLKEK 364
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPT--AQRLIEEKGTDALAAALAQ 229
+ P V+ + +A+ + + + ++ E TP AQ+L+E ++ + L +
Sbjct: 365 ITLLDIPSVQSIKLQNAKDLEKKILNIIEKNKEETTPNPLAQKLLENFSSEQIIQGLLK 423
>gi|254756954|ref|ZP_05208982.1| DEAD/DEAH box helicase [Bacillus anthracis str. Australia 94]
Length = 516
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HGD
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGK+G A+L T + ++++ER K + + P +++ LE + L + E
Sbjct: 334 AGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENE 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 394 NLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|449135622|ref|ZP_21771069.1| cold-shock deAd-box protein a [Rhodopirellula europaea 6C]
gi|448885676|gb|EMB16100.1| cold-shock deAd-box protein a [Rhodopirellula europaea 6C]
Length = 851
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 125/219 (57%), Gaps = 5/219 (2%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 80
A ++ A+ + K L+ ++ V G IVFT+TK V+ L+ ++ AL
Sbjct: 436 AASVRQRALFVSPRDKIDALTRILEVEETDG-VIVFTKTKDSTLSVAEKLSQQGFSAIAL 494
Query: 81 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 140
+GD+ Q RERT++ ++G+ VLVATDVAARGLD+P + + +++LP+D E++VHR GR
Sbjct: 495 NGDMPQKVRERTIDQLKRGQLDVLVATDVAARGLDVPRISHVFNFDLPHDSESYVHRIGR 554
Query: 141 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 200
TGRAG+ G AI+ T++QRR +R +E E + P V D+ E+ + + V
Sbjct: 555 TGRAGRSGQAIIFLTNAQRRQLRFIENTTKQPIEIIDIPTVADINEARVRRFKQRITDVS 614
Query: 201 P-ESVEFFTPTAQRLIEEKG--TDALAAALAQLSGFSRP 236
+ + + + EE G + +AAALA++S RP
Sbjct: 615 ADQDLTIYKDMIAQYAEESGKPMEMIAAALAEMSQNGRP 653
>gi|30260423|ref|NP_842800.1| DEAD/DEAH box helicase [Bacillus anthracis str. Ames]
gi|47525504|ref|YP_016853.1| DEAD/DEAH box helicase [Bacillus anthracis str. 'Ames Ancestor']
gi|47567484|ref|ZP_00238196.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
G9241]
gi|49183266|ref|YP_026518.1| DEAD/DEAH box helicase [Bacillus anthracis str. Sterne]
gi|49479130|ref|YP_034574.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|65317675|ref|ZP_00390634.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
str. A2012]
gi|118475995|ref|YP_893146.1| DEAD/DEAH box helicase [Bacillus thuringiensis str. Al Hakam]
gi|165871548|ref|ZP_02216194.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0488]
gi|167634144|ref|ZP_02392466.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0442]
gi|167640350|ref|ZP_02398615.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0193]
gi|170687759|ref|ZP_02878974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0465]
gi|170707898|ref|ZP_02898348.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0389]
gi|177653423|ref|ZP_02935633.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0174]
gi|190567376|ref|ZP_03020290.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Tsiankovskii-I]
gi|196035956|ref|ZP_03103357.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
W]
gi|196041156|ref|ZP_03108452.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
NVH0597-99]
gi|196046212|ref|ZP_03113439.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB108]
gi|218901440|ref|YP_002449274.1| ATP-dependent RNA helicase [Bacillus cereus AH820]
gi|225862289|ref|YP_002747667.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB102]
gi|227812915|ref|YP_002812924.1| ATP-dependent RNA helicase [Bacillus anthracis str. CDC 684]
gi|228912978|ref|ZP_04076622.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228925493|ref|ZP_04088587.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228931740|ref|ZP_04094641.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228983493|ref|ZP_04143703.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229089370|ref|ZP_04220646.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42]
gi|229119903|ref|ZP_04249162.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201]
gi|229154007|ref|ZP_04282136.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
4342]
gi|229182634|ref|ZP_04309880.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1]
gi|229604746|ref|YP_002864874.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0248]
gi|254686589|ref|ZP_05150448.1| DEAD/DEAH box helicase [Bacillus anthracis str. CNEVA-9066]
gi|254723571|ref|ZP_05185358.1| DEAD/DEAH box helicase [Bacillus anthracis str. A1055]
gi|254734933|ref|ZP_05192645.1| DEAD/DEAH box helicase [Bacillus anthracis str. Western North
America USA6153]
gi|254739718|ref|ZP_05197411.1| DEAD/DEAH box helicase [Bacillus anthracis str. Kruger B]
gi|254754911|ref|ZP_05206946.1| DEAD/DEAH box helicase [Bacillus anthracis str. Vollum]
gi|301051970|ref|YP_003790181.1| DEAD/DEAH box helicase [Bacillus cereus biovar anthracis str. CI]
gi|376264267|ref|YP_005116979.1| cold-shock DEAD-box protein A [Bacillus cereus F837/76]
gi|386734107|ref|YP_006207288.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus anthracis str.
H9401]
gi|81696998|sp|Q6HPE6.1|CSHA_BACHK RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|81715465|sp|Q81VG0.1|CSHA_BACAN RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|134039177|sp|A0R8U6.1|CSHA_BACAH RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|30253744|gb|AAP24286.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Ames]
gi|47500652|gb|AAT29328.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. 'Ames Ancestor']
gi|47555886|gb|EAL14225.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
G9241]
gi|49177193|gb|AAT52569.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Sterne]
gi|49330686|gb|AAT61332.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|118415220|gb|ABK83639.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
thuringiensis str. Al Hakam]
gi|164712652|gb|EDR18183.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0488]
gi|167511752|gb|EDR87133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0193]
gi|167530458|gb|EDR93173.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0442]
gi|170127256|gb|EDS96133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0389]
gi|170668286|gb|EDT19034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0465]
gi|172081463|gb|EDT66536.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0174]
gi|190561503|gb|EDV15474.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Tsiankovskii-I]
gi|195991325|gb|EDX55292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
W]
gi|196022957|gb|EDX61637.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB108]
gi|196028091|gb|EDX66702.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
NVH0597-99]
gi|218539043|gb|ACK91441.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH820]
gi|225790192|gb|ACO30409.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB102]
gi|227005398|gb|ACP15141.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. CDC 684]
gi|228600842|gb|EEK58416.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1]
gi|228629528|gb|EEK86226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
4342]
gi|228663560|gb|EEL19141.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201]
gi|228693970|gb|EEL47657.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42]
gi|228776237|gb|EEM24593.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228827920|gb|EEM73653.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228834238|gb|EEM79781.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228846673|gb|EEM91681.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|229269154|gb|ACQ50791.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0248]
gi|300374139|gb|ADK03043.1| DEAD/DEAH box helicase [Bacillus cereus biovar anthracis str. CI]
gi|364510067|gb|AEW53466.1| Cold-shock DEAD-box protein A [Bacillus cereus F837/76]
gi|384383959|gb|AFH81620.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus anthracis str.
H9401]
Length = 528
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 124/218 (56%), Gaps = 5/218 (2%)
Query: 24 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 82
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 83 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 142
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 143 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 201
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 202 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|417303385|ref|ZP_12090443.1| cold-shock deAd box protein a [Rhodopirellula baltica WH47]
gi|327540357|gb|EGF26943.1| cold-shock deAd box protein a [Rhodopirellula baltica WH47]
Length = 862
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 125/219 (57%), Gaps = 5/219 (2%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 80
A ++ A+ + K L+ ++ V G IVFT+TK V+ L+ ++ AL
Sbjct: 446 AASVRQRALFVSPRDKIDALTRILEVEETDG-VIVFTKTKDSTLSVAEKLSQQGFSAIAL 504
Query: 81 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 140
+GD+ Q RERT++ ++G+ VLVATDVAARGLD+P + + +++LP+D E++VHR GR
Sbjct: 505 NGDMPQKVRERTIDQLKRGQLDVLVATDVAARGLDVPRISHVFNFDLPHDSESYVHRIGR 564
Query: 141 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 200
TGRAG+ G AI+ T++QRR +R +E E + P V D+ E+ + + V
Sbjct: 565 TGRAGRSGQAIIFLTNAQRRQLRFIENTTKQPIEIIDIPTVADINEARVRRFKQRITDVS 624
Query: 201 P-ESVEFFTPTAQRLIEEKG--TDALAAALAQLSGFSRP 236
+ + + + EE G + +AAALA++S RP
Sbjct: 625 ADQDLTVYKDMIAQYAEESGKPMEMIAAALAEMSQNGRP 663
>gi|212638043|ref|YP_002314563.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
gi|212559523|gb|ACJ32578.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
Length = 471
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 124/217 (57%), Gaps = 9/217 (4%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 77
E I+ Y I K L+ L+ + + IVF +TKR DE++ AL A+
Sbjct: 212 EMTVPNIEQYYIEIQEKKKFDTLTRLLDIQS-PELAIVFGRTKRRVDELAEALNLRGYAA 270
Query: 78 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
E +HGD+SQ +R L F++G +LVATDVAARGLDI V + ++++P DPE++VHR
Sbjct: 271 EGIHGDLSQAKRLSVLRKFKEGSIDILVATDVAARGLDISGVTHVYNFDIPQDPESYVHR 330
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE----SSAEQVV 193
GRTGRAGK G AI T + + +E+ K E + PP +++ LE ++ E+++
Sbjct: 331 IGRTGRAGKTGMAITFVTPREIGQLHHIEKTTKRKMERMKPPTLDEALEGQQRAAIEKLL 390
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQL 230
AT+ ++ F+ A+ L+EE + +L AA ++
Sbjct: 391 ATIEH---NNLAFYKRAAEELLEEHDSVSLVAACIKM 424
>gi|384135153|ref|YP_005517867.1| DEAD/DEAH box helicase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339289238|gb|AEJ43348.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
Length = 526
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 111/179 (62%), Gaps = 2/179 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TKR D++ AL + ++ LHGD+SQ QR+R + FR+ + +LVATDVAARG
Sbjct: 243 IIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIELLVATDVAARG 302
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ +V +I+Y++P DPE++VHR GRTGRAGK G AI + T + + ++ +ER++ K
Sbjct: 303 LDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYKLLKQIEREIKQKI 362
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALAAALAQLS 231
P +EDV E AE + + V E + + L++E +A+AL +L+
Sbjct: 363 TVREVPSLEDVAERQAEMWRSKIVDVIREGGLAPYRAILSGLVDEHDPIDIASALLKLA 421
>gi|169628494|ref|YP_001702143.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
ATCC 19977]
gi|419716620|ref|ZP_14244016.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
M94]
gi|420863361|ref|ZP_15326754.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0303]
gi|420867758|ref|ZP_15331143.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0726-RA]
gi|420872190|ref|ZP_15335570.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0726-RB]
gi|420908973|ref|ZP_15372286.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0125-R]
gi|420915356|ref|ZP_15378661.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0125-S]
gi|420919746|ref|ZP_15383044.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0728-S]
gi|420926243|ref|ZP_15389528.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-1108]
gi|420965711|ref|ZP_15428925.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0810-R]
gi|420976589|ref|ZP_15439771.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0212]
gi|420981969|ref|ZP_15445139.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0728-R]
gi|420986517|ref|ZP_15449678.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0206]
gi|421006515|ref|ZP_15469630.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0119-R]
gi|421011836|ref|ZP_15474929.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0122-R]
gi|421016756|ref|ZP_15479823.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0122-S]
gi|421022668|ref|ZP_15485716.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0731]
gi|421028023|ref|ZP_15491060.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0930-R]
gi|421033882|ref|ZP_15496904.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0930-S]
gi|421039073|ref|ZP_15502084.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0116-R]
gi|421042545|ref|ZP_15505550.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0116-S]
gi|169240461|emb|CAM61489.1| Probable cold-shock DEAD box protein A homolog (ATP-dependent RNA
helicase DEAD homolog) [Mycobacterium abscessus]
gi|382940906|gb|EIC65228.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
M94]
gi|392073161|gb|EIT99001.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0726-RA]
gi|392073881|gb|EIT99719.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0303]
gi|392076379|gb|EIU02212.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0726-RB]
gi|392121347|gb|EIU47112.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0125-R]
gi|392123040|gb|EIU48802.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0125-S]
gi|392133751|gb|EIU59493.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0728-S]
gi|392138651|gb|EIU64384.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-1108]
gi|392170848|gb|EIU96525.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0212]
gi|392173987|gb|EIU99653.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0728-R]
gi|392187934|gb|EIV13573.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0206]
gi|392202267|gb|EIV27864.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0119-R]
gi|392210240|gb|EIV35810.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0122-R]
gi|392215365|gb|EIV40913.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0731]
gi|392215856|gb|EIV41403.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0122-S]
gi|392227287|gb|EIV52801.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0116-R]
gi|392230423|gb|EIV55933.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0930-S]
gi|392231929|gb|EIV57433.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0930-R]
gi|392241611|gb|EIV67099.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0116-S]
gi|392257699|gb|EIV83148.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0810-R]
Length = 598
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 122/209 (58%), Gaps = 22/209 (10%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK+ +EV+ L + A+ A++GDI+Q QRERT+N + G +LVATDVAARG
Sbjct: 266 IVFVRTKQATEEVADKLKARGFAAAAINGDINQSQRERTINALKAGTIDILVATDVAARG 325
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + +++Y++P+D E++VHR GRTGRAG+ GTA+L + +R ++++E+ G K
Sbjct: 326 LDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTAVLFVSPRERHLLKAIEKTTGAKL 385
Query: 174 EFVSPPVVEDVLESSAEQVV----ATLNGVHPESVEFFTPTAQRLIEEKGTDA------L 223
P VEDV +A++V A + VE F +RL+E+ D +
Sbjct: 386 AEEPLPSVEDV---NAQRVTKFRDAITAALAAPEVELF----RRLVEDYERDNNVPVADI 438
Query: 224 AAALAQLS----GFSRPPSSRSLINHEQG 248
AAALA LS F P HE+G
Sbjct: 439 AAALAVLSRDGEQFLLQPDPPREPRHERG 467
>gi|423515083|ref|ZP_17491564.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA2-4]
gi|401168046|gb|EJQ75314.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA2-4]
Length = 540
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + K +L+ L+ + + I+F +TKR DE+S AL A+E +HGD
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIIFGRTKRRVDELSEALNLRGYAAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGK+G A+L T + ++++ER K + + P +++ LE + L + +
Sbjct: 334 AGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIEND 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 394 NLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|423370478|ref|ZP_17347885.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD142]
gi|401073949|gb|EJP82358.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD142]
Length = 542
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + K +L+ L+ + + I+F +TKR DE+S AL A+E +HGD
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIIFGRTKRRVDELSEALNLRGYAAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGK+G A+L T + ++++ER K + + P +++ LE + L + +
Sbjct: 334 AGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIEND 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 394 NLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|163938237|ref|YP_001643121.1| DEAD/DEAH box helicase [Bacillus weihenstephanensis KBAB4]
gi|229131241|ref|ZP_04260147.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST196]
gi|423514499|ref|ZP_17491006.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA2-1]
gi|163860434|gb|ABY41493.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
KBAB4]
gi|228652232|gb|EEL08163.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST196]
gi|402442074|gb|EJV74016.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA2-1]
Length = 538
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + K +L+ L+ + + I+F +TKR DE+S AL A+E +HGD
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIIFGRTKRRVDELSEALNLRGYAAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGK+G A+L T + ++++ER K + + P +++ LE + L + +
Sbjct: 334 AGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIEND 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 394 NLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|397678974|ref|YP_006520509.1| cold-shock DEAD box protein A-like protein [Mycobacterium
massiliense str. GO 06]
gi|418249081|ref|ZP_12875403.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
47J26]
gi|419711589|ref|ZP_14239052.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
M93]
gi|420930546|ref|ZP_15393822.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-151-0930]
gi|420936028|ref|ZP_15399297.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-152-0914]
gi|420940798|ref|ZP_15404060.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-153-0915]
gi|420946105|ref|ZP_15409358.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-154-0310]
gi|420951063|ref|ZP_15414309.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0626]
gi|420955234|ref|ZP_15418473.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0107]
gi|420960958|ref|ZP_15424186.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-1231]
gi|420991202|ref|ZP_15454354.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0307]
gi|420997038|ref|ZP_15460178.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0912-R]
gi|421001472|ref|ZP_15464602.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0912-S]
gi|353450736|gb|EHB99130.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
47J26]
gi|382938911|gb|EIC63240.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
M93]
gi|392139564|gb|EIU65296.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-151-0930]
gi|392141543|gb|EIU67268.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-152-0914]
gi|392151585|gb|EIU77293.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-153-0915]
gi|392159313|gb|EIU85009.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-154-0310]
gi|392160840|gb|EIU86531.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0626]
gi|392189282|gb|EIV14916.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0912-R]
gi|392190213|gb|EIV15845.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0307]
gi|392200290|gb|EIV25896.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0912-S]
gi|392254023|gb|EIV79490.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-1231]
gi|392255762|gb|EIV81223.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0107]
gi|395457239|gb|AFN62902.1| Cold-shock DEAD box protein A-like protein [Mycobacterium
massiliense str. GO 06]
Length = 598
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 122/209 (58%), Gaps = 22/209 (10%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK+ +EV+ L + A+ A++GDI+Q QRERT+N + G +LVATDVAARG
Sbjct: 266 IVFVRTKQATEEVADKLKARGFAAAAINGDINQSQRERTINALKAGTIDILVATDVAARG 325
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + +++Y++P+D E++VHR GRTGRAG+ GTA+L + +R ++++E+ G K
Sbjct: 326 LDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTAVLFVSPRERHLLKAIEKTTGAKL 385
Query: 174 EFVSPPVVEDVLESSAEQVV----ATLNGVHPESVEFFTPTAQRLIEEKGTDA------L 223
P VEDV +A++V A + VE F +RL+E+ D +
Sbjct: 386 AEEPLPSVEDV---NAQRVTKFRDAITAALAAPEVELF----RRLVEDYERDNNVPVADI 438
Query: 224 AAALAQLS----GFSRPPSSRSLINHEQG 248
AAALA LS F P HE+G
Sbjct: 439 AAALAVLSRDGEQFLLQPDPPREPRHERG 467
>gi|326204124|ref|ZP_08193984.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
DSM 2782]
gi|325985635|gb|EGD46471.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
DSM 2782]
Length = 564
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 15/222 (6%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ Y + ++K +LS LI ++VF TK+ DE++ +L S ++EALHGD
Sbjct: 218 IEQYYLEVKESAKLEVLSRLIDT-NDIKLSLVFCNTKKRVDELTASLQSRGFSAEALHGD 276
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
+ Q R++ ++ FR+G F +L+ATDVAARG+D+ +V+ + +Y+LPND E +VHR GRTGR
Sbjct: 277 MRQEHRDKVMSLFRKGNFDILIATDVAARGIDVDDVEAVFNYDLPNDEEYYVHRIGRTGR 336
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPE 202
AG+ G A + + +R ++R + PP + +V E ++ TL + + +
Sbjct: 337 AGRTGKAFTFISGREMYKLRDIQRYTKSTIVAMKPPSLNEVEEKKMLNILKTLKDNLKDD 396
Query: 203 SVEFFTPTAQRLI-------EEKGTD-----ALAAALAQLSG 232
S+ F +R I EE+G + +AAAL ++ G
Sbjct: 397 SISKFVSHIERFIDTINNESEEQGENFVTSLDVAAALLKMYG 438
>gi|163848628|ref|YP_001636672.1| DEAD/DEAH box helicase [Chloroflexus aurantiacus J-10-fl]
gi|222526563|ref|YP_002571034.1| DEAD/DEAH box helicase [Chloroflexus sp. Y-400-fl]
gi|163669917|gb|ABY36283.1| DEAD/DEAH box helicase domain protein [Chloroflexus aurantiacus
J-10-fl]
gi|222450442|gb|ACM54708.1| DEAD/DEAH box helicase domain protein [Chloroflexus sp. Y-400-fl]
Length = 552
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 90/131 (68%), Gaps = 1/131 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +T+++AD++ L A+E+LHGD+SQ R+R + FR+G+ VLVATDVAARG
Sbjct: 243 IVFCRTRQEADDIGERLQGRGYAAESLHGDLSQAARDRVMRRFREGQLDVLVATDVAARG 302
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V +I+Y++P DPE++VHR GRTGRAG+EG AI T +RR ++ +ER +
Sbjct: 303 LDIAEVSHVINYDVPTDPESYVHRIGRTGRAGREGVAITFITPRERRMLQIIERVTRTRI 362
Query: 174 EFVSPPVVEDV 184
E P + DV
Sbjct: 363 ERCQMPTLADV 373
>gi|365869382|ref|ZP_09408929.1| cold-shock DEAD box protein A-like protein (ATP-dependent RNA
helicase DEAD-like protein) [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
gi|414582556|ref|ZP_11439696.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-1215]
gi|420876743|ref|ZP_15340115.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0304]
gi|420881759|ref|ZP_15345123.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0421]
gi|420888066|ref|ZP_15351420.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0422]
gi|420893793|ref|ZP_15357135.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0708]
gi|420898622|ref|ZP_15361958.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0817]
gi|420903935|ref|ZP_15367256.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-1212]
gi|420970934|ref|ZP_15434131.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0921]
gi|421048242|ref|ZP_15511238.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
gi|363998839|gb|EHM20045.1| cold-shock DEAD box protein A-like protein (ATP-dependent RNA
helicase DEAD-like protein) [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
gi|392090420|gb|EIU16233.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0304]
gi|392090814|gb|EIU16625.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0421]
gi|392092626|gb|EIU18431.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0422]
gi|392102383|gb|EIU28170.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0708]
gi|392107863|gb|EIU33645.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0817]
gi|392109193|gb|EIU34971.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-1212]
gi|392117708|gb|EIU43476.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-1215]
gi|392171906|gb|EIU97579.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0921]
gi|392242407|gb|EIV67894.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
CCUG 48898]
Length = 598
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 122/209 (58%), Gaps = 22/209 (10%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK+ +EV+ L + A+ A++GDI+Q QRERT+N + G +LVATDVAARG
Sbjct: 266 IVFVRTKQATEEVADKLKARGFAAAAINGDINQSQRERTINALKAGTIDILVATDVAARG 325
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + +++Y++P+D E++VHR GRTGRAG+ GTA+L + +R ++++E+ G K
Sbjct: 326 LDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTAVLFVSPRERHLLKAIEKTTGAKL 385
Query: 174 EFVSPPVVEDVLESSAEQVV----ATLNGVHPESVEFFTPTAQRLIEEKGTDA------L 223
P VEDV +A++V A + VE F +RL+E+ D +
Sbjct: 386 AEEPLPSVEDV---NAQRVTKFRDAITAALAAPEVELF----RRLVEDYERDNNVPVADI 438
Query: 224 AAALAQLS----GFSRPPSSRSLINHEQG 248
AAALA LS F P HE+G
Sbjct: 439 AAALAVLSRDGEQFLLQPDPPREPRHERG 467
>gi|218895359|ref|YP_002443770.1| DEAD/DEAH box helicase [Bacillus cereus G9842]
gi|228906018|ref|ZP_04069910.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
IBL 200]
gi|228937529|ref|ZP_04100171.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228970416|ref|ZP_04131071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228976986|ref|ZP_04137394.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
Bt407]
gi|384184309|ref|YP_005570205.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|402562678|ref|YP_006605402.1| ATP-dependent RNA helicase [Bacillus thuringiensis HD-771]
gi|410672597|ref|YP_006924968.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus thuringiensis
Bt407]
gi|423364241|ref|ZP_17341734.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD022]
gi|423526472|ref|ZP_17502917.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB1-1]
gi|423565415|ref|ZP_17541691.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-A1]
gi|452196603|ref|YP_007476684.1| Cold-shock DEAD-box protein A [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|218543277|gb|ACK95671.1| DEAD/DEAH box helicase [Bacillus cereus G9842]
gi|228782733|gb|EEM30903.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
Bt407]
gi|228789302|gb|EEM37226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228822140|gb|EEM68126.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228853621|gb|EEM98386.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
IBL 200]
gi|326938018|gb|AEA13914.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|401073132|gb|EJP81571.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD022]
gi|401193994|gb|EJR00992.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-A1]
gi|401791330|gb|AFQ17369.1| ATP-dependent RNA helicase [Bacillus thuringiensis HD-771]
gi|402456266|gb|EJV88042.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB1-1]
gi|409171726|gb|AFV16031.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus thuringiensis
Bt407]
gi|452101996|gb|AGF98935.1| Cold-shock DEAD-box protein A [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 529
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HGD
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGK+G A+L T + ++++ER K + + P +++ LE + L + E
Sbjct: 334 AGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNE 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 394 NLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|75760678|ref|ZP_00740704.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228898976|ref|ZP_04063254.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
IBL 4222]
gi|423387287|ref|ZP_17364541.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG1X1-2]
gi|434378873|ref|YP_006613517.1| DEAD/DEAH box helicase [Bacillus thuringiensis HD-789]
gi|74491828|gb|EAO55018.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228860669|gb|EEN05051.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
IBL 4222]
gi|401629250|gb|EJS47075.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG1X1-2]
gi|401877430|gb|AFQ29597.1| DEAD/DEAH box helicase [Bacillus thuringiensis HD-789]
Length = 521
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HGD
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGK+G A+L T + ++++ER K + + P +++ LE + L + E
Sbjct: 334 AGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNE 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 394 NLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|229009737|ref|ZP_04166960.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM
2048]
gi|229055077|ref|ZP_04195508.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603]
gi|423485535|ref|ZP_17462217.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BtB2-4]
gi|423491260|ref|ZP_17467904.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus CER057]
gi|423501944|ref|ZP_17478561.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus CER074]
gi|423596874|ref|ZP_17572899.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD048]
gi|423602239|ref|ZP_17578239.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD078]
gi|423665253|ref|ZP_17640392.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM022]
gi|423671681|ref|ZP_17646685.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM034]
gi|423672515|ref|ZP_17647454.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM062]
gi|228721261|gb|EEL72786.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603]
gi|228751532|gb|EEM01335.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM
2048]
gi|401151508|gb|EJQ58957.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus CER074]
gi|401161714|gb|EJQ69077.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus CER057]
gi|401218539|gb|EJR25216.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD048]
gi|401226140|gb|EJR32681.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD078]
gi|401290577|gb|EJR96269.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM022]
gi|401291502|gb|EJR97173.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM034]
gi|401311621|gb|EJS16907.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM062]
gi|402441494|gb|EJV73449.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BtB2-4]
Length = 538
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + K +L+ L+ + + I+F +TKR DE+S AL A+E +HGD
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIIFGRTKRRVDELSEALNLRGYAAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQAKRMSVLRKFKEGTIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGK+G A+L T + ++++ER K + + P +++ LE + L + +
Sbjct: 334 AGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMDAPTLDEALEGQQRLIAEKLQSTIEND 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 394 NLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|431931469|ref|YP_007244515.1| DNA/RNA helicase [Thioflavicoccus mobilis 8321]
gi|431829772|gb|AGA90885.1| DNA/RNA helicase, superfamily II [Thioflavicoccus mobilis 8321]
Length = 629
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 112/362 (30%), Positives = 173/362 (47%), Gaps = 48/362 (13%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
++F +TK + E++ L + A+EAL+GD++Q RERT+ FR G+ +LVATDVAARG
Sbjct: 267 LIFVRTKTETVELAERLCAHGFAAEALNGDMNQVMRERTVERFRDGRLDILVATDVAARG 326
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ V+L+++Y++PNDP +VHR GRTGRAG+ G A+L +R +R++ER +
Sbjct: 327 LDVERVNLVVNYDIPNDPAAYVHRIGRTGRAGRAGRAVLFVEPRERGLLRAIERTIRQSV 386
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDAL--AAALAQL 230
+ P E V ES + L + + ++FF R+ E+ + + AAALA L
Sbjct: 387 PAMDIPSAEAVSESRIGRFTEDLRTALADQDMDFFYRLVGRIAHEQELEVMDIAAALAYL 446
Query: 231 SGFSRP----------------------------------PSSRSLINHEQ-GWVTLQLT 255
RP P R Q G L
Sbjct: 447 VQRERPLVVAEVPQPRIDADRRGRRDRPDRAGRDPRAGHGPRERRGPRETQNGDAGLVAY 506
Query: 256 RDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQ 315
R R + R ++G +++ +IG+I I D ++ DLP E+ + L+ +Q
Sbjct: 507 RIEVGRRDGVGPREIVGAIANEAGIDGRQIGRIAIRDDH----SLVDLPAEMPRALV-QQ 561
Query: 316 IPPGNTISKITKL-PALQD-DGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSM 373
+ K +L PA + GP D++ R DRF + G RG +GG G +
Sbjct: 562 LQRVYVCGKALQLHPAERGARGPERDDW-RGGGNDRFGQQGRPE-GRGAGKGGRPGRFAG 619
Query: 374 DR 375
DR
Sbjct: 620 DR 621
>gi|418419638|ref|ZP_12992821.1| cold-shock DEAD box protein A-like protein (ATP-dependent RNA
helicase DEAD-like protein) [Mycobacterium abscessus
subsp. bolletii BD]
gi|364001268|gb|EHM22464.1| cold-shock DEAD box protein A-like protein (ATP-dependent RNA
helicase DEAD-like protein) [Mycobacterium abscessus
subsp. bolletii BD]
Length = 598
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 122/209 (58%), Gaps = 22/209 (10%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK+ +EV+ L + A+ A++GDI+Q QRERT+N + G +LVATDVAARG
Sbjct: 266 IVFVRTKQATEEVADKLKARGFAAAAINGDINQSQRERTINALKAGTIDILVATDVAARG 325
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + +++Y++P+D E++VHR GRTGRAG+ GTA+L + +R ++++E+ G K
Sbjct: 326 LDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTAVLFVSPRERHLLKAIEKTTGAKL 385
Query: 174 EFVSPPVVEDVLESSAEQVV----ATLNGVHPESVEFFTPTAQRLIEEKGTDA------L 223
P VEDV +A++V A + VE F +RL+E+ D +
Sbjct: 386 AEEPLPSVEDV---NAQRVTKFRDAITAALAAPEVELF----RRLVEDYERDNNVPVADI 438
Query: 224 AAALAQLS----GFSRPPSSRSLINHEQG 248
AAALA LS F P HE+G
Sbjct: 439 AAALAVLSRDGEQFLLQPDPPREPRHERG 467
>gi|52144993|ref|YP_081836.1| DEAD/DEAH box helicase [Bacillus cereus E33L]
gi|81689748|sp|Q63GX5.1|CSHA_BACCZ RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|51978462|gb|AAU20012.1| DEAD/DEAH box helicase [Bacillus cereus E33L]
Length = 528
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 124/218 (56%), Gaps = 5/218 (2%)
Query: 24 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 82
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 83 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 142
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 143 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 201
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 202 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|218248985|ref|YP_002374356.1| DEAD/DEAH box helicase [Cyanothece sp. PCC 8801]
gi|257062070|ref|YP_003139958.1| DEAD/DEAH box helicase [Cyanothece sp. PCC 8802]
gi|218169463|gb|ACK68200.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8801]
gi|256592236|gb|ACV03123.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8802]
Length = 485
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 107/181 (59%), Gaps = 8/181 (4%)
Query: 55 IVFTQTKRDADEVSLALTSIIAS-EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK+ A E++ L S + HG++SQ QRER + FR+GK ++VATD+AARG
Sbjct: 246 IIFVRTKQTAAELTCKLQEAGQSVDEYHGNLSQSQRERLVYRFREGKIKLVVATDIAARG 305
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ N+ +I+Y+LP++ ET++HR GRTGRAGK GTAI + RR ++ +ER + +
Sbjct: 306 LDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRMIKQIERKLRQQL 365
Query: 174 EFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 229
E P V LE Q+ +L G E + F P + L E A+AAA Q
Sbjct: 366 EICQIPSRSQVESKRLEKLQRQIQESLAG---ERMASFLPIVRELSAEYDPQAIAAAALQ 422
Query: 230 L 230
+
Sbjct: 423 M 423
>gi|452209335|ref|YP_007489449.1| Cold-shock DEAD-box protein A [Methanosarcina mazei Tuc01]
gi|452099237|gb|AGF96177.1| Cold-shock DEAD-box protein A [Methanosarcina mazei Tuc01]
Length = 610
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 112/179 (62%), Gaps = 2/179 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VF +TK D +++ L+ ++ALHGD+SQ +RE+ LN FR+ K +L ATDVAARG
Sbjct: 248 LVFCRTKTDTSQLAQKLSDRGYLADALHGDLSQQEREKILNKFRKQKINILAATDVAARG 307
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+DI ++ +I+Y LP DPE++VHR GRTGRAGK+GTAI TS++ R + +++ +
Sbjct: 308 IDIMDLTHVINYALPQDPESYVHRIGRTGRAGKQGTAITFVTSTEFRRLTYIKKTSKSEM 367
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 231
+ P ++DV+++ +V L + E +Q+L+EE + + AAL + +
Sbjct: 368 KKGHIPEIKDVIKAKRARVRTELEETIKTEEYGDCLEMSQKLLEEYPAEKILAALWKFT 426
>gi|421511440|ref|ZP_15958310.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus anthracis str.
UR-1]
gi|401818518|gb|EJT17718.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus anthracis str.
UR-1]
Length = 515
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 124/218 (56%), Gaps = 5/218 (2%)
Query: 24 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 82
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 178 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 236
Query: 83 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 142
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 237 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 296
Query: 143 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 201
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 297 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIEN 356
Query: 202 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 357 ENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 392
>gi|228956670|ref|ZP_04118461.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|423632143|ref|ZP_17607889.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD154]
gi|228803008|gb|EEM49835.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|401262038|gb|EJR68185.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD154]
Length = 517
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 124/218 (56%), Gaps = 5/218 (2%)
Query: 24 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 82
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 83 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 142
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 143 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 201
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 202 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|229041132|ref|ZP_04189892.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676]
gi|423646358|ref|ZP_17621928.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD169]
gi|228727214|gb|EEL78411.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676]
gi|401287656|gb|EJR93433.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD169]
Length = 525
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 124/218 (56%), Gaps = 5/218 (2%)
Query: 24 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 82
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 83 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 142
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 143 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 201
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 202 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|229107908|ref|ZP_04237540.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15]
gi|229125742|ref|ZP_04254771.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-Cer4]
gi|229143032|ref|ZP_04271470.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST24]
gi|296501059|ref|YP_003662759.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
gi|423590490|ref|ZP_17566552.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD045]
gi|423644958|ref|ZP_17620574.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD166]
gi|423653166|ref|ZP_17628465.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD200]
gi|146291075|sp|Q81IT9.2|CSHA_BACCR RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|228640440|gb|EEK96832.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST24]
gi|228657715|gb|EEL13524.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-Cer4]
gi|228675551|gb|EEL30763.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15]
gi|296322111|gb|ADH05039.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
gi|401220472|gb|EJR27106.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD045]
gi|401268292|gb|EJR74342.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD166]
gi|401302693|gb|EJS08265.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD200]
Length = 533
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 124/218 (56%), Gaps = 5/218 (2%)
Query: 24 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 82
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 83 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 142
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 143 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 201
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 202 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|334364237|ref|ZP_08513229.1| putative DEAD-box ATP-dependent RNA helicase CshA [Alistipes sp.
HGB5]
gi|313159432|gb|EFR58795.1| putative DEAD-box ATP-dependent RNA helicase CshA [Alistipes sp.
HGB5]
Length = 653
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 108/179 (60%), Gaps = 2/179 (1%)
Query: 55 IVFTQTKRDADE-VSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK ADE VS A+E LHGD+SQ QRE+ L FR +LVATDVAARG
Sbjct: 248 IIFARTKIGADETVSRLAARGYAAEVLHGDVSQAQREKILRKFRDRSVNILVATDVAARG 307
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ N+ +I+Y LP D E++VHR GRTGRAGK+GTAI + S+ R + +L RD+ +
Sbjct: 308 IDVGNLTHVINYSLPQDSESYVHRIGRTGRAGKQGTAITFVSPSEFRGLNNLMRDIKVEI 367
Query: 174 EFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 231
+ + P +D++E ++ + V ES + + A+ L+ E D AL +L+
Sbjct: 368 KRETLPSPQDIVEMKRLKIKDEMQEIVENESYDGYREFAEELLAEYTPDVALGALLRLA 426
>gi|226229135|ref|YP_002763241.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca
T-27]
gi|226092326|dbj|BAH40771.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca
T-27]
Length = 594
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 112/194 (57%), Gaps = 6/194 (3%)
Query: 8 FSHSTQVGNQDEKLAEG----IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRD 63
V + E +AEG ++ A + K L+ ++ + + IVF +T+ +
Sbjct: 213 LRQPVHVKVEREVVAEGESARVRQVAYVVSRAHKMPALARVLDIE-QPTSAIVFCRTRTE 271
Query: 64 ADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 122
DE+S LT+ + +EALHG +SQ QR+R + FR K +L+ATDVAARGLD+ +V +
Sbjct: 272 VDELSETLTARGLRAEALHGGLSQDQRDRVMQKFRARKVDLLIATDVAARGLDVKHVSHV 331
Query: 123 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 182
+++++P D ET+VHR GRTGRAG+EG A+ + R +R++ER G K E P V
Sbjct: 332 VNFDVPVDAETYVHRIGRTGRAGREGVAVTFAEPRENRLLRNIERQTGQKIEIAQVPTVA 391
Query: 183 DVLESSAEQVVATL 196
D+ E V ATL
Sbjct: 392 DLRAHRRELVRATL 405
>gi|30018496|ref|NP_830127.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
gi|29894036|gb|AAP07328.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
Length = 514
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HGD
Sbjct: 196 IQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGD 254
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 255 LTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 314
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGK+G A+L T + ++++ER K + + P +++ LE + L + E
Sbjct: 315 AGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENE 374
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 375 NLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 409
>gi|228963331|ref|ZP_04124496.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228796359|gb|EEM43802.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 510
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HGD
Sbjct: 196 IQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGD 254
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 255 LTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 314
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGK+G A+L T + ++++ER K + + P +++ LE + L + E
Sbjct: 315 AGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNE 374
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 375 NLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 409
>gi|229101040|ref|ZP_04231822.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-28]
gi|228682378|gb|EEL36473.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-28]
Length = 374
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 124/218 (56%), Gaps = 5/218 (2%)
Query: 24 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 82
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 59 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 117
Query: 83 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 142
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 118 DLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 177
Query: 143 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 201
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 178 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIEN 237
Query: 202 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
+++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 238 DNLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 273
>gi|229165218|ref|ZP_04293010.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621]
gi|228618250|gb|EEK75283.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621]
Length = 519
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + K +L+ L+ + + I+F +TKR DE+S AL A+E +HGD
Sbjct: 196 IQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIIFGRTKRRVDELSEALNLRGYAAEGIHGD 254
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 255 LTQAKRMSVLRKFKEGTIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 314
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGK+G A+L T + ++++ER K + + P +++ LE + L + +
Sbjct: 315 AGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMDAPTLDEALEGQQRLIAEKLQSTIEND 374
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 375 NLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 409
>gi|423462498|ref|ZP_17439292.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5X2-1]
gi|401131792|gb|EJQ39442.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5X2-1]
Length = 528
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HGD
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGK+G A+L T + ++++ER K + + P +++ LE + L + +
Sbjct: 334 AGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIEND 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 394 NLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|254425384|ref|ZP_05039102.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
gi|196192873|gb|EDX87837.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
Length = 570
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 77/180 (42%), Positives = 108/180 (60%), Gaps = 4/180 (2%)
Query: 55 IVFTQTKRDADEVSLALTSIIASEA-LHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK E+S L + + A L GD+ Q+QRERT+ RQGK +LVATDVAARG
Sbjct: 249 IVFVRTKVATVELSEKLEARGYNTAPLSGDVPQNQRERTVERLRQGKLDILVATDVAARG 308
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + +I+Y++P DPE +VHR GRTGRAG+EG AIL T ++R + S+ER +
Sbjct: 309 LDVERISHVINYDMPYDPEAYVHRIGRTGRAGREGEAILFVTPREKRLLSSIERSTRQRI 368
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDA--LAAALAQL 230
E + P E V + E+ + N + E FFT ++ +E A +A ALA+L
Sbjct: 369 ERMEMPSTEVVNDQRIERFKQKITNALAQEDSAFFTQILEQYEQEHDVPAIEIAGALAKL 428
>gi|423421599|ref|ZP_17398688.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3X2-1]
gi|401097261|gb|EJQ05289.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3X2-1]
Length = 532
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HGD
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGK+G A+L T + ++++ER K + + P +++ LE + L + +
Sbjct: 334 AGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIEND 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 394 NLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|229015638|ref|ZP_04172628.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273]
gi|229021830|ref|ZP_04178406.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272]
gi|423393316|ref|ZP_17370542.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG1X1-3]
gi|228739470|gb|EEL89890.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272]
gi|228745658|gb|EEL95670.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273]
gi|401630235|gb|EJS48042.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG1X1-3]
Length = 530
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HGD
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGK+G A+L T + ++++ER K + + P +++ LE + L + +
Sbjct: 334 AGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIEND 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 394 NLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|224373572|ref|YP_002607944.1| ATP-dependent RNA helicase DeaD [Nautilia profundicola AmH]
gi|223588451|gb|ACM92187.1| ATP-dependent RNA helicase DeaD [Nautilia profundicola AmH]
Length = 467
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 107/182 (58%), Gaps = 4/182 (2%)
Query: 23 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 81
E IK Y + L LI Y + K IVF +TK+D D V+ L+ + ++ LH
Sbjct: 207 ENIKEYFYVIDEHERNDALIRLID-YKQPNKAIVFCRTKKDVDTVADFLSGVGFDAKGLH 265
Query: 82 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 141
GD+ Q +RE + GF+ + +LVATDVAARGLD+ +V + +Y LP DPE++VHR GRT
Sbjct: 266 GDMDQRKREEVIKGFKGNRIEILVATDVAARGLDVNDVTHVFNYHLPLDPESYVHRIGRT 325
Query: 142 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP 201
GRAGKEG AI + T + R + +++ K E P ++DV + ++++ ++ + P
Sbjct: 326 GRAGKEGMAISLVTPHEFRALSKIQK--ISKIELKEVPTLQDVKNTEIQKIMEKISSIEP 383
Query: 202 ES 203
+
Sbjct: 384 NT 385
>gi|423398827|ref|ZP_17376028.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-1]
gi|423409729|ref|ZP_17386878.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-3]
gi|401646011|gb|EJS63645.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-1]
gi|401652844|gb|EJS70396.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-3]
Length = 531
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HGD
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGK+G A+L T + ++++ER K + + P +++ LE + L + +
Sbjct: 334 AGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIESD 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 394 NLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|227548399|ref|ZP_03978448.1| superfamily II helicase, partial [Corynebacterium lipophiloflavum
DSM 44291]
gi|227079443|gb|EEI17406.1| superfamily II helicase [Corynebacterium lipophiloflavum DSM 44291]
Length = 683
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 93/134 (69%), Gaps = 1/134 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK + +E++ L + ++ A++GDI+Q QRERT++ R G+ +LVATDVAARG
Sbjct: 347 IVFVRTKHETEELAEKLRARGFSAAAINGDIAQQQRERTVDQLRDGRLDILVATDVAARG 406
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER
Sbjct: 407 LDVERISHVFNYDIPNDIESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNATI 466
Query: 174 EFVSPPVVEDVLES 187
E + P V++V ES
Sbjct: 467 EEMELPTVDEVNES 480
>gi|313885567|ref|ZP_07819317.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619297|gb|EFR30736.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola
ACS-139-V-Col8]
Length = 526
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 122/208 (58%), Gaps = 3/208 (1%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 80
A+ I Y + + K IL+ ++ + + K I+F +TK+ DE+ L+ +E +
Sbjct: 212 ADLIDQYFVKCRDSEKFDILTRMLDIESPD-KAIIFARTKKRVDEIGRGLSLRGYDAELI 270
Query: 81 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 140
HGD++Q +R + +N F+QG+ +LVATDVAARG+D+ V + +Y++P DPE++VHR GR
Sbjct: 271 HGDVTQQKRTQVMNEFKQGRLELLVATDVAARGIDVSGVTHVYNYDIPQDPESYVHRIGR 330
Query: 141 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 200
TGRAG EG ++ S+ +R++E + + PP ++ S +Q++ LN
Sbjct: 331 TGRAGNEGQSVTFVMESELPYLRTIESLTKNQMTPMRPPTDQEAEASQVQQLIDRLNATI 390
Query: 201 PE-SVEFFTPTAQRLIEEKGTDALAAAL 227
+ +V+ + TA+ L+ ++AL A L
Sbjct: 391 ADGTVDPYRATAKLLLNHYESNALVAGL 418
>gi|229188506|ref|ZP_04315550.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
10876]
gi|228594969|gb|EEK52744.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
10876]
Length = 528
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 124/218 (56%), Gaps = 5/218 (2%)
Query: 24 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 82
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 83 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 142
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 143 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 201
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQN 392
Query: 202 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|421498106|ref|ZP_15945244.1| deaD [Aeromonas media WS]
gi|407182876|gb|EKE56795.1| deaD [Aeromonas media WS]
Length = 563
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 103/173 (59%), Gaps = 8/173 (4%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+VF +TK A+E++ L + A EALHGDI Q RERT++ RQG+ +L+ATDV AR
Sbjct: 187 VLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIATDVVAR 246
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+ + +++Y++P D E++VHR GRTGRAG++G AIL +RR +R++E
Sbjct: 247 GLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAIEHATRQA 306
Query: 173 FEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 221
E + P ED+ + E++ T+ G E +E + LIEE D
Sbjct: 307 IEPMKMPSTEDINQHRMTKFKERIRETMMG---EELEIYVNLVNELIEEDSAD 356
>gi|145299438|ref|YP_001142279.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418357190|ref|ZP_12959892.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142852210|gb|ABO90531.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356689580|gb|EHI54116.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 613
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 103/173 (59%), Gaps = 8/173 (4%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+VF +TK A+E++ L + A EALHGDI Q RERT++ RQG+ +L+ATDV AR
Sbjct: 250 VLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIATDVVAR 309
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+ + +++Y++P D E++VHR GRTGRAG++G AIL +RR +R++E
Sbjct: 310 GLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAIEHATRQA 369
Query: 173 FEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 221
E + P ED+ + E++ T+ G E +E + LIEE D
Sbjct: 370 IEPMKMPSTEDINQHRMTKFKERIRETMMG---EELELYLNLVNELIEEDSAD 419
>gi|228989414|ref|ZP_04149403.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides
DSM 12442]
gi|228770361|gb|EEM18936.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides
DSM 12442]
Length = 528
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 125/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HGD
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGK+G A+L T + ++++E+ K + ++ P +++ LE + L + +
Sbjct: 334 AGKKGIAMLFVTPRESGQLKNIEQTTKRKIDRMNAPTLDEALEGQQRLIAEKLQSTIESD 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 394 NLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|228995609|ref|ZP_04155275.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides
Rock3-17]
gi|228764181|gb|EEM13062.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides
Rock3-17]
Length = 536
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 125/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HGD
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGK+G A+L T + ++++E+ K + ++ P +++ LE + L + +
Sbjct: 334 AGKKGIAMLFVTPRESGQLKNIEQTTKRKIDRMNAPTLDEALEGQQRLIAEKLQSTIESD 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 394 NLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|415886177|ref|ZP_11548000.1| DEAD/DEAH box helicase domain protein [Bacillus methanolicus MGA3]
gi|387588830|gb|EIJ81151.1| DEAD/DEAH box helicase domain protein [Bacillus methanolicus MGA3]
Length = 485
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 112/187 (59%), Gaps = 4/187 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE+S AL +E +HGD+SQ +R L F++G VLVATDVAARG
Sbjct: 244 IVFGRTKRRVDELSEALNLRGYMAEGIHGDLSQAKRLSVLRKFKEGLIDVLVATDVAARG 303
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ ++ +E+ + +
Sbjct: 304 LDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGMAMTFVTPREKAYLKIVEKTIKRRM 363
Query: 174 EFVSPPVVEDVLESSAEQVV-ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ + PP +++ LE + + + + +++F+ A+ L+E+ DA+ A L
Sbjct: 364 DKMKPPTLDEALEGQQKATIDKIIQTIETNNLQFYKQAAEELLEQH--DAVTVVSAVLKM 421
Query: 233 FSRPPSS 239
++ P +
Sbjct: 422 LTKEPDT 428
>gi|160881936|ref|YP_001560904.1| DEAD/DEAH box helicase [Clostridium phytofermentans ISDg]
gi|160430602|gb|ABX44165.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
ISDg]
Length = 527
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 126/238 (52%), Gaps = 11/238 (4%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ Y +K +LS L+ +Y+ + +VF TKR DE+ AL+ +E LHGD
Sbjct: 217 IEQYYYEVRPKNKVDVLSRLLDMYSPK-RCLVFCNTKRQVDELVTALSGRGFFAEGLHGD 275
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
+ Q QR+R ++ FR GK +LVATDVAARG+D+ +V+ + +Y++P D E +VHR GRTGR
Sbjct: 276 LKQQQRDRVMSSFRTGKAEILVATDVAARGIDVDDVEAVFNYDVPQDEEYYVHRIGRTGR 335
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH-PE 202
AG+ G A + + +R ++R K + + P V DV AE+++ +N + E
Sbjct: 336 AGRTGRAFTLVVGKEVYKLRDIQRYCKTKIKVMPIPSVNDVTAVKAEKILDRINELMDAE 395
Query: 203 SVEFFTPTAQRLIEEKGTDAL---AAALAQLSGFSRPPSSRSLINH-----EQGWVTL 252
+ + I E AL AA L G P +++ + EQG V L
Sbjct: 396 DLTKMISIIEAKINESDYTALDVAAAFLKMAMGSDSQPEEQAVPDFGDTGAEQGMVRL 453
>gi|289422689|ref|ZP_06424529.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
gi|289156868|gb|EFD05493.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
Length = 547
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 77
E IK + I T ++K +L+ LI VY T+VFT TK+ ADE+ L + +
Sbjct: 212 ELTVNNIKQFYIETRKSNKLEVLTRLIDVY-NPKLTVVFTNTKKGADELVSDLQARGYGA 270
Query: 78 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
++LHGD+ Q QR+ ++ FR G +LVATDVAARG+D+ +V+ +I+YELP D E +VHR
Sbjct: 271 DSLHGDLKQVQRDIVMDKFRHGTIDILVATDVAARGIDVDDVECVINYELPQDEEYYVHR 330
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 184
GRTGRAG++G A + R ++ +ER K S P V DV
Sbjct: 331 IGRTGRAGRDGIAFSFVFGREMRKLKDIERYTKSKVMKHSIPTVNDV 377
>gi|387927977|ref|ZP_10130655.1| DEAD/DEAH box helicase domain protein [Bacillus methanolicus PB1]
gi|387587563|gb|EIJ79885.1| DEAD/DEAH box helicase domain protein [Bacillus methanolicus PB1]
Length = 485
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 116/190 (61%), Gaps = 10/190 (5%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE+S AL +E +HGD+SQ +R L F++G VLVATDVAARG
Sbjct: 244 IVFGRTKRRVDELSEALNLRGYMAEGIHGDLSQAKRLSVLRKFKEGSIDVLVATDVAARG 303
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ ++ +E+ + +
Sbjct: 304 LDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGMAMTFVTPREKAYLKIVEKTIKRRM 363
Query: 174 EFVSPPVVEDVLE----SSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 229
+ + PP +++ LE ++ E+++ T+ +++ + A+ L+E++ DA+ A
Sbjct: 364 DKMKPPTLDEALEGQQKATIEKIIQTIES---NNLQLYKQAAEDLLEQQ--DAVMVVSAA 418
Query: 230 LSGFSRPPSS 239
L ++ P +
Sbjct: 419 LKMMTKEPDT 428
>gi|225849264|ref|YP_002729428.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644065|gb|ACN99115.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 397
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 102/161 (63%), Gaps = 2/161 (1%)
Query: 18 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IA 76
DE E IK +K L ++++ + KTI+FTQTK +AD++S L+ +
Sbjct: 212 DEITVEKIKQIIYRVDPKNKFNKLIEVLS-QNQAEKTIIFTQTKLEADQLSEDLSKEGFS 270
Query: 77 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 136
A+HGD SQ +RE L+ FR GK +LVATDVAARGLDI V+L+I+Y LP + E++VH
Sbjct: 271 VSAIHGDFSQKKRETVLHNFRTGKLKILVATDVAARGLDIKGVELVINYGLPKNAESYVH 330
Query: 137 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 177
R GRTGRAGKEGTAI + T S+ + ++ + + E ++
Sbjct: 331 RIGRTGRAGKEGTAISIPTPSEDKYLQQILQKTKANIEVIN 371
>gi|423405051|ref|ZP_17382224.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-2]
gi|423479888|ref|ZP_17456602.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6X1-1]
gi|401645694|gb|EJS63344.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-2]
gi|402424280|gb|EJV56466.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6X1-1]
Length = 527
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HGD
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGK+G A+L T + ++++ER K + + P +++ LE + L + +
Sbjct: 334 AGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIEND 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 394 NLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|229171082|ref|ZP_04298680.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus MM3]
gi|228612412|gb|EEK69636.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus MM3]
Length = 530
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HGD
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGK+G A+L T + ++++ER K + + P +++ LE + L + +
Sbjct: 334 AGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIEND 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 394 NLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|329847732|ref|ZP_08262760.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
biprosthecum C19]
gi|328842795|gb|EGF92364.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
biprosthecum C19]
Length = 606
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 95/149 (63%), Gaps = 6/149 (4%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYAKG--GKTIVFTQTKRDADEVSLALTSI-IASE 78
AE + + A KR +LS++ YA +T+VFT+TKR AD V+ L + + +
Sbjct: 217 AERVSQQVLFIEAQRKRALLSEM---YADAVLERTLVFTRTKRSADRVAAYLQAGGVEAA 273
Query: 79 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS 138
A+HGD +Q QRER L FR GK LVATD+AARG+D+ NV +I+YELPN E +VHR
Sbjct: 274 AIHGDKNQSQRERALQAFRAGKVRALVATDIAARGIDVDNVSHVINYELPNVAEAYVHRI 333
Query: 139 GRTGRAGKEGTAILMFTSSQRRTVRSLER 167
GRT RAGK G +I + +RR ++ +ER
Sbjct: 334 GRTARAGKSGVSITLCADDERRLLKDIER 362
>gi|294497056|ref|YP_003560756.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
gi|294346993|gb|ADE67322.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
Length = 503
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 123/216 (56%), Gaps = 5/216 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I Y + K IL+ L+ + + I+F +TKR DE+S AL +++ +HGD
Sbjct: 215 ITQYYLEVQEKRKFDILTRLLDMQSPE-LAIIFGRTKRRVDELSEALNMRGYSAQGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQSKRLSVLRQFKEGSIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPE 202
AGK G A+ T + + ++ER K E ++PP +++ +E L V
Sbjct: 334 AGKMGAAMTFVTPRETGQLHNIERTTKRKMERLTPPTLDEAMEGQQRIAADKLTESVTQG 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPS 238
++ ++ A+ L+EE + +L AA +L F++ P+
Sbjct: 394 NLSYYKQLAEELLEEHDSVSLVAAAIKL--FTKEPN 427
>gi|386867208|ref|YP_006280202.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp.
animalis ATCC 25527]
gi|385701291|gb|AFI63239.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp.
animalis ATCC 25527]
Length = 646
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 97/146 (66%), Gaps = 5/146 (3%)
Query: 52 GKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 110
G+ I+FT+TK A +++ LT S I + LHG++SQHQR+R L F G+ VLVATDVA
Sbjct: 280 GRRILFTRTKFQAKKLAHTLTQSGIPAAELHGNLSQHQRDRNLQAFESGQVNVLVATDVA 339
Query: 111 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 170
ARG+D+ NV L++ E P DP++F HRSGRT RAG+ G + + T Q+R +R L ++V
Sbjct: 340 ARGIDVSNVGLVVQVEPPEDPKSFTHRSGRTARAGQSGDVVTLMTPDQKRKIRHLFKEVD 399
Query: 171 CKFE--FVSP--PVVEDVLESSAEQV 192
K + V+P P V++++ A+ V
Sbjct: 400 IKLKPVEVTPESPQVQELVGQKADPV 425
>gi|354604010|ref|ZP_09022003.1| hypothetical protein HMPREF9450_00918 [Alistipes indistinctus YIT
12060]
gi|353348442|gb|EHB92714.1| hypothetical protein HMPREF9450_00918 [Alistipes indistinctus YIT
12060]
Length = 645
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 107/179 (59%), Gaps = 2/179 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK DE+ LT A+E LHGD+SQ QRE+ L F+ + T+L ATDVAARG
Sbjct: 250 IVFCRTKVAVDELVTRLTQRGYAAEGLHGDVSQAQREKILKKFKNKQVTILAATDVAARG 309
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+DI N+ +I+Y LP D E++VHR GRTGRAG GTAI +SS+ R ++R++
Sbjct: 310 IDINNLTHVINYSLPQDSESYVHRIGRTGRAGNTGTAITFISSSEYRQFVMMQREIKVDI 369
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 231
+ V P ++V+E ++ L + E+ + A L++++ + AA+ +L+
Sbjct: 370 KKVPIPTAQNVVEIKKNRIKDELAEIIENENYTEYGEMAADLLKDQSPEVAMAAVLRLA 428
>gi|229074285|ref|ZP_04207329.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-18]
gi|229094946|ref|ZP_04225949.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-29]
gi|229113900|ref|ZP_04243333.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-3]
gi|423381728|ref|ZP_17359011.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG1O-2]
gi|423444415|ref|ZP_17421320.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG4X2-1]
gi|423450244|ref|ZP_17427122.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5O-1]
gi|423467853|ref|ZP_17444621.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6O-1]
gi|423537254|ref|ZP_17513672.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB2-9]
gi|423542981|ref|ZP_17519369.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB4-10]
gi|423543712|ref|ZP_17520070.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB5-5]
gi|423620164|ref|ZP_17595995.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD115]
gi|423626833|ref|ZP_17602608.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD148]
gi|228669561|gb|EEL24970.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-3]
gi|228688479|gb|EEL42354.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-29]
gi|228708837|gb|EEL60966.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-18]
gi|401126252|gb|EJQ33996.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5O-1]
gi|401167096|gb|EJQ74390.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB4-10]
gi|401186994|gb|EJQ94070.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB5-5]
gi|401248889|gb|EJR55208.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD115]
gi|401250188|gb|EJR56490.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD148]
gi|401628655|gb|EJS46489.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG1O-2]
gi|402411097|gb|EJV43473.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG4X2-1]
gi|402412290|gb|EJV44650.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6O-1]
gi|402459706|gb|EJV91442.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB2-9]
Length = 529
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HGD
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGK+G A+L T + ++++ER K + + P +++ LE + L + +
Sbjct: 334 AGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIEND 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 394 NLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|433447995|ref|ZP_20411254.1| DEAD-box ATP-dependent RNA helicase CshA [Anoxybacillus
flavithermus TNO-09.006]
gi|431999627|gb|ELK20547.1| DEAD-box ATP-dependent RNA helicase CshA [Anoxybacillus
flavithermus TNO-09.006]
Length = 471
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 118/214 (55%), Gaps = 3/214 (1%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 77
E I+ Y I K L+ L+ + + IVF +TKR DE++ AL +
Sbjct: 212 EMTVPNIEQYYIEIQEKKKFDTLTRLLDIQS-PELAIVFGRTKRRVDELAEALNLRGYTA 270
Query: 78 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
E +HGD+SQ +R L F++G +LVATDVAARGLDI V + ++++P DPE++VHR
Sbjct: 271 EGIHGDLSQAKRLSVLRKFKEGSIDILVATDVAARGLDISGVTHVYNFDIPQDPESYVHR 330
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV-ATL 196
GRTGRAGK G AI T + + +E+ K E + PP +++ LES + L
Sbjct: 331 IGRTGRAGKTGMAITFVTPREIGQLHHIEKTTKRKMERMKPPTLDEALESQQRAAIEKLL 390
Query: 197 NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQL 230
+ ++ F+ A+ L+EE + +L AA ++
Sbjct: 391 TTIEHNNLSFYKRAAEELLEEHDSVSLVAACIKM 424
>gi|344340391|ref|ZP_08771316.1| DEAD/DEAH box helicase domain protein [Thiocapsa marina 5811]
gi|343799561|gb|EGV17510.1| DEAD/DEAH box helicase domain protein [Thiocapsa marina 5811]
Length = 623
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 123/223 (55%), Gaps = 5/223 (2%)
Query: 18 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IA 76
D + + I + T K +L+ ++ + G +VF +TK E++ L + A
Sbjct: 215 DSETVDTIDQHHCVVTRFHKLDVLTRILELEPFDG-MLVFVRTKHATVELADKLKAHGFA 273
Query: 77 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 136
+E L+GD+SQ RERT+ +QG +LVATDVAARGLD+ + +++Y++P DP +VH
Sbjct: 274 AEPLNGDMSQEMRERTVERLKQGHLDILVATDVAARGLDVERLSHVVNYDIPTDPSAYVH 333
Query: 137 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 196
R GRTGRAG+ G AIL+ +R +R++ER + + PP + ES ++ A L
Sbjct: 334 RIGRTGRAGRAGRAILLVEPRERGLLRAIERTIRRSVPAMEPPSASQLSESRIDRFTAEL 393
Query: 197 NGVHPES-VEFFTPTAQRLIEEKGTDAL--AAALAQLSGFSRP 236
E ++FF RL E+ + + AAALA L+ RP
Sbjct: 394 RKTLTEQDLDFFYRLVARLATEQELEMMDIAAALAYLTQRERP 436
>gi|39939200|ref|NP_950966.1| superfamily II DNA and RNA helicase [Onion yellows phytoplasma
OY-M]
gi|39722309|dbj|BAD04799.1| superfamily II DNA and RNA helicase [Onion yellows phytoplasma
OY-M]
Length = 552
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 110/178 (61%), Gaps = 3/178 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F TK+D DE++ L ++A+HGD+ Q+QR+ +N FR+GK +L+ATDVAARG
Sbjct: 246 ILFANTKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILIATDVAARG 305
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI ++ ++I+Y+LP++ E +VHR GRTGRAGK+G A + + + ++ LE + K
Sbjct: 306 LDISDIKMVINYDLPHEDEVYVHRIGRTGRAGKKGLAYSLISPRKVSQLKKLEYYLKEKI 365
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPT--AQRLIEEKGTDALAAALAQ 229
+ P V+ + +A+ + L + ++ E TP AQ+L+E ++ + L +
Sbjct: 366 TLLDIPSVQSIKLQNAKDLEKKLLNIIEKNNEDATPNQLAQKLLETFSSEQIIQGLLK 423
>gi|384049181|ref|YP_005497198.1| DEAD/DEAH box helicase [Bacillus megaterium WSH-002]
gi|345446872|gb|AEN91889.1| DEAD/DEAH box helicase domain protein [Bacillus megaterium WSH-002]
Length = 484
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 123/216 (56%), Gaps = 5/216 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I Y + K IL+ L+ + + I+F +TKR DE+S AL +++ +HGD
Sbjct: 196 ITQYYLEVQEKRKFDILTRLLDMQSPE-LAIIFGRTKRRVDELSEALNMRGYSAQGIHGD 254
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 255 LTQSKRLSVLRQFKEGSIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 314
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPE 202
AGK G A+ T + + ++ER K E ++PP +++ +E L V
Sbjct: 315 AGKMGAAMTFVTPRETGQLHNIERTTKRKMERMTPPTLDEAMEGQQRIAADKLTESVTQG 374
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPS 238
++ ++ A+ L+EE + +L AA +L F++ P+
Sbjct: 375 NLSYYKQLAEELLEEHDSVSLVAAAIKL--FTKEPN 408
>gi|229159401|ref|ZP_04287421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803]
gi|228624068|gb|EEK80874.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803]
Length = 528
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 124/218 (56%), Gaps = 5/218 (2%)
Query: 24 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 82
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 83 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 142
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 143 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 201
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 202 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
+++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 DNLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|365156794|ref|ZP_09353090.1| hypothetical protein HMPREF1015_01991 [Bacillus smithii 7_3_47FAA]
gi|363626851|gb|EHL77816.1| hypothetical protein HMPREF1015_01991 [Bacillus smithii 7_3_47FAA]
Length = 473
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 122/213 (57%), Gaps = 10/213 (4%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ Y I K +LS L+ V + IVF +TKR DE++ ALT ++E +HGD
Sbjct: 215 IEQYFIKIQEREKFDVLSRLLDVQSPE-LAIVFGRTKRRVDELTRALTLRGYSAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
+SQ +R L F++GK VLVATDVAARGLDI V + +Y++P DPE++VHR GRTGR
Sbjct: 274 LSQMKRLNVLKKFKEGKVDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL----ESSAEQVVATLNGV 199
AGKEG AI + + +R +ER + + PP + L +++ ++ LN
Sbjct: 334 AGKEGIAITFVSPREMGYLREVERTTKKRMTPMQPPTWTEALIGQQKAAVNEIETCLNN- 392
Query: 200 HPESVEFFTPTAQRLIEE-KGTDALAAALAQLS 231
E++E + A L+ + + +AAAL L+
Sbjct: 393 --ENLEDYQELANELLAQFPPSQVVAAALKLLT 423
>gi|407708172|ref|YP_006831757.1| hypothetical protein MC28_4936 [Bacillus thuringiensis MC28]
gi|407385857|gb|AFU16358.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
MC28]
Length = 507
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HGD
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGK+G A+L T + ++++ER K + + P +++ LE + L + +
Sbjct: 334 AGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIEND 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 394 NLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|120601130|ref|YP_965530.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris DP4]
gi|120561359|gb|ABM27103.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4]
Length = 532
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 109/182 (59%), Gaps = 5/182 (2%)
Query: 53 KTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111
K IVF TK+ DE++ AL I ++ALHGD++Q QRER ++ FR G +VLVATDVAA
Sbjct: 246 KAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVLVATDVAA 305
Query: 112 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 171
RGLD+ +VD +I+++LPNDPET+VHR GRTGRAG+ G A +R ++R G
Sbjct: 306 RGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGQAFSFAAGRDVYKLRDIQRVTGS 365
Query: 172 KFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDA--LAAALA 228
+ + + P D + Q++ + G+ P ++LI E G D LAA L
Sbjct: 366 RIDRRAMPTAADASRARTGQLLEEVAAGLASAETSACLPVVEKLIAE-GADPTQLAATLL 424
Query: 229 QL 230
++
Sbjct: 425 RM 426
>gi|392417671|ref|YP_006454276.1| DNA/RNA helicase, superfamily II [Mycobacterium chubuense NBB4]
gi|390617447|gb|AFM18597.1| DNA/RNA helicase, superfamily II [Mycobacterium chubuense NBB4]
Length = 563
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 104/171 (60%), Gaps = 2/171 (1%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 80
AE I I + K L+ L+ V +G IVF +TK+ +EV+ L + A+ A+
Sbjct: 223 AENITQRYIQVSHQRKMDALTRLLEV-EQGDAMIVFVRTKQATEEVAEKLKARGFAAAAI 281
Query: 81 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 140
+GDI Q RERT+N + G +LVATDVAARGLD+ + +++Y++P+DPE++VHR GR
Sbjct: 282 NGDIPQAVRERTINQLKDGSIDILVATDVAARGLDVERISHVVNYDIPHDPESYVHRIGR 341
Query: 141 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 191
TGRAG+ GTA+L T +R + S+ER K P VEDV E ++
Sbjct: 342 TGRAGRSGTALLFVTPRERHLLNSIERVTRQKLVESELPSVEDVNERRVQK 392
>gi|220929887|ref|YP_002506796.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10]
gi|220000215|gb|ACL76816.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum
H10]
Length = 565
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 111/194 (57%), Gaps = 3/194 (1%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ Y + ++K +LS LI ++VF TK+ DE++ +L S ++EALHGD
Sbjct: 218 IEQYYLEVKESAKLEVLSRLIDT-NDIKLSLVFCNTKKRVDELTASLQSRGFSAEALHGD 276
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
+ Q R++ +N FR+G F +L+ATDVAARG+D+ +V+ + +Y+LPND E +VHR GRTGR
Sbjct: 277 MRQEHRDKVMNLFRKGNFDILIATDVAARGIDVDDVEAVFNYDLPNDDEYYVHRIGRTGR 336
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN-GVHPE 202
AG+ G A + +R ++R + PP + +V E ++ L + E
Sbjct: 337 AGRTGKAFTFIYGREMYKLRDIQRYTKSTIIPMKPPSLNEVEEKKMSNILKALKENLKDE 396
Query: 203 SVEFFTPTAQRLIE 216
SV F +R I+
Sbjct: 397 SVSKFASHIERFID 410
>gi|254284072|ref|ZP_04959040.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
gi|219680275|gb|EED36624.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
Length = 598
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 95/137 (69%), Gaps = 1/137 (0%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
I+F +T+ E++ L + A+ AL+GDI+Q+QRE+T++ F++G+ +LVATDVAAR
Sbjct: 250 VIIFVRTRIATQELADKLAARGFATAALNGDIAQNQREKTVDSFKRGQLDLLVATDVAAR 309
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+ V +I+Y++PNDPE ++HR GRTGRAG+ G AIL +RR + ++ER G K
Sbjct: 310 GLDVDRVSHVINYDIPNDPEAYIHRIGRTGRAGRTGEAILFAAKRERRLLHAIERTTGQK 369
Query: 173 FEFVSPPVVEDVLESSA 189
+ ++ P E V++ A
Sbjct: 370 IDQMTLPSAEQVVDKRA 386
>gi|443897680|dbj|GAC75020.1| vacuolar sorting protein VPS33/slp1, partial [Pseudozyma antarctica
T-34]
Length = 658
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 98/160 (61%), Gaps = 5/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + I+ KR++L D++ GG T++F +TKR AD
Sbjct: 473 VFLSVGRVGSTSENITQKIEY----VEDDDKRSVLLDVLASMPTGGLTLIFVETKRMADM 528
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S L S IA+ ++HGD +Q +RER L FR GK ++VAT VAARGLDIPNV +++Y
Sbjct: 529 LSDFLLRSNIAATSIHGDRTQRERERALELFRSGKTPIMVATAVAARGLDIPNVTHVVNY 588
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP+D + +VHR GRTGRAG G A F + VR L
Sbjct: 589 DLPSDVDDYVHRIGRTGRAGNTGHATAFFNRGNKNIVRDL 628
>gi|429728801|ref|ZP_19263505.1| putative DEAD-box ATP-dependent RNA helicase CshA
[Peptostreptococcus anaerobius VPI 4330]
gi|429147776|gb|EKX90798.1| putative DEAD-box ATP-dependent RNA helicase CshA
[Peptostreptococcus anaerobius VPI 4330]
Length = 547
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 77
E IK + I T ++K +L+ LI VY T+VFT TK+ ADE+ L + +
Sbjct: 212 ELTVNNIKQFYIETRKSNKLEVLTRLIDVY-NPKLTVVFTNTKKGADELVSDLQARGYGA 270
Query: 78 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
++LHGD+ Q QR+ ++ FR G +LVATDVAARG+D+ +V+ +I+YELP D E +VHR
Sbjct: 271 DSLHGDLKQVQRDIVMDKFRHGTIDILVATDVAARGIDVDDVECVINYELPQDEEYYVHR 330
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 184
GRTGRAG++G A + R ++ +ER K S P V DV
Sbjct: 331 IGRTGRAGRDGIAFSFVFGREMRKLKDIERYTKSKVMKHSIPTVNDV 377
>gi|343425171|emb|CBQ68708.1| probable DED1-ATP-dependent RNA helicase [Sporisorium reilianum
SRZ2]
Length = 674
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 98/160 (61%), Gaps = 5/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + I+ KR++L D++ GG T++F +TKR AD
Sbjct: 411 VFLSVGRVGSTSENITQKIEY----VEDDDKRSVLLDVLASMPSGGLTLIFVETKRMADM 466
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S L S IA+ ++HGD +Q +RER L FR GK ++VAT VAARGLDIPNV +++Y
Sbjct: 467 LSDFLLRSNIAATSIHGDRTQRERERALELFRSGKTPIMVATAVAARGLDIPNVTHVVNY 526
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP+D + +VHR GRTGRAG G A F + VR L
Sbjct: 527 DLPSDVDDYVHRIGRTGRAGNVGHATAFFNRGNKNIVRDL 566
>gi|209545470|ref|YP_002277699.1| DEAD/DEAH box helicase [Gluconacetobacter diazotrophicus PAl 5]
gi|209533147|gb|ACI53084.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 390
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 92/129 (71%), Gaps = 1/129 (0%)
Query: 51 GGKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 109
GG+T+VFT+TK+ AD ++ L T + + ALHGD Q +R+RTL+ FR+G+ VLVATDV
Sbjct: 261 GGRTMVFTRTKQAADALARTLNTGGVTAAALHGDHGQVRRDRTLDDFRRGRLLVLVATDV 320
Query: 110 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 169
ARG+D+ +V L++++++P PET++HR GRT RAG+ GTA+ + ++R +R +ER
Sbjct: 321 MARGIDVEDVALVVNFDIPEQPETYIHRIGRTARAGRRGTALSLCDPAERLKLRDIERQS 380
Query: 170 GCKFEFVSP 178
G + + P
Sbjct: 381 GARITVIDP 389
>gi|197294292|ref|YP_001798833.1| DEAD/DEAH box helicase-like [Candidatus Phytoplasma australiense]
gi|171853619|emb|CAM11490.1| DEAD/DEAH box helicase-like [Candidatus Phytoplasma australiense]
Length = 564
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 126/215 (58%), Gaps = 9/215 (4%)
Query: 19 EKLA-EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IA 76
+KLA I+ Y K +L L+ + + TI+F TK+D DE++ L
Sbjct: 210 KKLAVNAIEQYYFLVKEFDKNKLLVRLLDL-KRDYSTILFANTKKDVDEITSFLQDKGFL 268
Query: 77 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 136
++A+HGD+ Q+QR+ +N FR+GK +L+ATDVAARG+DI ++ ++++Y+LP++ E +VH
Sbjct: 269 ADAVHGDLKQNQRQYVMNNFRKGKIKILIATDVAARGIDISDIKMVVNYDLPHEDEVYVH 328
Query: 137 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED----VLESSAEQV 192
R GRTGRAGK+G A + + ++ LE + K +F+ P VE+ +LE+ ++V
Sbjct: 329 RIGRTGRAGKKGLAYSFISPRKFSQLKKLEYYLKEKVKFLEIPSVEEIKKQILENFEQKV 388
Query: 193 VATLNGVHPESVEFFTPTAQRLIEEKGTDALAAAL 227
+ + E+ P ++L+++ ++ + L
Sbjct: 389 IDIIEKNSQENAN--NPMIEKLLQKFSSEQIIQGL 421
>gi|46581710|ref|YP_012518.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris str. Hildenborough]
gi|387154902|ref|YP_005703838.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris RCH1]
gi|46451133|gb|AAS97778.1| ATP-dependent RNA helicase, DEAD/DEAH family [Desulfovibrio
vulgaris str. Hildenborough]
gi|311235346|gb|ADP88200.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris RCH1]
Length = 532
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 109/182 (59%), Gaps = 5/182 (2%)
Query: 53 KTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111
K IVF TK+ DE++ AL I ++ALHGD++Q QRER ++ FR G +VLVATDVAA
Sbjct: 246 KAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVLVATDVAA 305
Query: 112 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 171
RGLD+ +VD +I+++LPNDPET+VHR GRTGRAG+ G A +R ++R G
Sbjct: 306 RGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGRAFSFAAGRDVYKLRDIQRVTGS 365
Query: 172 KFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDA--LAAALA 228
+ + + P D + Q++ + G+ P ++LI E G D LAA L
Sbjct: 366 RIDRRAMPTAADASRARTGQLLEEVAAGLASAETSACLPVVEKLIAE-GADPTQLAATLL 424
Query: 229 QL 230
++
Sbjct: 425 RM 426
>gi|313672966|ref|YP_004051077.1| dead/deah box helicase domain-containing protein [Calditerrivibrio
nitroreducens DSM 19672]
gi|312939722|gb|ADR18914.1| DEAD/DEAH box helicase domain protein [Calditerrivibrio
nitroreducens DSM 19672]
Length = 528
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 111/180 (61%), Gaps = 4/180 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
++F +TK D D V L +EALHGDISQ+QRER L F+ + +LVATDVAARG
Sbjct: 248 LIFCRTKVDVDTVCNRLIDRGYNAEALHGDISQYQRERILKRFKAKQINMLVATDVAARG 307
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+DI ++ +I+Y LP DPE++VHR GRTGRAGKEGTAI T + R + + +
Sbjct: 308 IDISDLTHVINYSLPQDPESYVHRIGRTGRAGKEGTAITFVTPEEYRKLLYIMKIAKADI 367
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPESV--EFFTPTAQRLIEEKGTDALAAALAQLS 231
+ P V +V+++ E++ ++ + +++ ++F A +L+EE + AAL +++
Sbjct: 368 KKKKVPSVSEVIQAKKERIKDEVSDILSDNMSNDYFE-LANKLLEEYDPVKIVAALLKMN 426
>gi|407975260|ref|ZP_11156166.1| DEAD/DEAH box helicase [Nitratireductor indicus C115]
gi|407429345|gb|EKF42023.1| DEAD/DEAH box helicase [Nitratireductor indicus C115]
Length = 649
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 109/186 (58%), Gaps = 8/186 (4%)
Query: 48 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 106
+ + +VF T+ + V+ + + AL G++SQ++R L R G+ V VA
Sbjct: 241 FYEAKNALVFCNTRAMVNHVTARFNNRGFSVVALSGELSQNERTHALQAMRDGRARVCVA 300
Query: 107 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 166
TDVAARG+D+PN++L+IH +LP + ET +HRSGRTGRAG++G + L+ S RR L
Sbjct: 301 TDVAARGIDLPNLELVIHADLPTNAETLLHRSGRTGRAGRKGVSALIMPVSGRRRAERLL 360
Query: 167 RDVGCKFEFVSPPVVEDVLESSAEQVVATLN---GVHPESVEFFTPTAQRLIEEKGTDAL 223
RD + E+ +PP E VL+ E+++A N VH + +F +RL+ E G + +
Sbjct: 361 RDAKVQLEWDNPPSAEAVLQRDDERLLADPNLTESVHEDEADFV----RRLLAEHGAEQV 416
Query: 224 AAALAQ 229
AAA +
Sbjct: 417 AAAFVR 422
>gi|295702421|ref|YP_003595496.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
gi|294800080|gb|ADF37146.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
Length = 503
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 123/216 (56%), Gaps = 5/216 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I Y + K IL+ L+ + + I+F +TKR DE+S AL +++ +HGD
Sbjct: 215 ITQYYLEVQEKRKFDILTRLLDMQSPE-LAIIFGRTKRRVDELSEALNMRGYSAQGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQSKRLSVLRQFKEGSIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPE 202
AGK G A+ T + + ++ER K E ++PP +++ +E L V
Sbjct: 334 AGKMGAAMTFVTPRETGQLHNIERTTKRKMERLTPPTLDEAMEGQQRIAADKLTESVTQG 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPS 238
++ ++ A+ L+EE + +L AA +L F++ P+
Sbjct: 394 NLSYYKQLAEELLEEHDSVSLVAAAIKL--FTKEPN 427
>gi|291280174|ref|YP_003497009.1| ATP-dependent RNA helicase DEAD/DEAH box family [Deferribacter
desulfuricans SSM1]
gi|290754876|dbj|BAI81253.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Deferribacter
desulfuricans SSM1]
Length = 525
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 108/179 (60%), Gaps = 10/179 (5%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
++F +TK D D V+ L +E LHGD+SQ+QRER L+ F+ + +LVATDVAARG
Sbjct: 248 LIFCRTKVDVDTVANKLIDRGYNAEGLHGDLSQYQRERILHKFKTKRINMLVATDVAARG 307
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+DI N+ +I+Y LP +PE++VHR GRTGRAGK+G AI T S+ R + + R +
Sbjct: 308 IDIDNLTHVINYSLPQNPESYVHRIGRTGRAGKKGIAITFVTPSEYRNLLYIMRISNTEI 367
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGV-----HPESVEFFTPTAQRLIEEKGTDALAAAL 227
+ P VE+++E+ + ++ L V H + ++F A+ L+ + + AA+
Sbjct: 368 KKEKLPDVEEIIENKKKHIIDDLKAVVENKEHKDYLDF----AKELLSVGNPEDIVAAM 422
>gi|114564866|ref|YP_752380.1| DEAD/DEAH box helicase [Shewanella frigidimarina NCIMB 400]
gi|114336159|gb|ABI73541.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
NCIMB 400]
Length = 634
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 118/222 (53%), Gaps = 12/222 (5%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 80
E I + + +K L ++ V G I+F +T+ E++ L + AS L
Sbjct: 216 VESIDQRYVQVSQHNKLEALVRVLEVENTEG-IIIFVRTRNSCVELAEKLEARGYASSPL 274
Query: 81 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 140
HGD++Q RER + ++GK +L+ATDVAARGLD+ + +++Y++P D E +VHR GR
Sbjct: 275 HGDMNQQARERAVEQLKRGKLDILIATDVAARGLDVERIGHVVNYDIPYDSEAYVHRIGR 334
Query: 141 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATL 196
TGRAG+ G AIL T+ + R +R++ER + + P E V E EQ+ T+
Sbjct: 335 TGRAGRTGMAILFVTNREMRMLRTIERATNSRISPMKVPSPESVAERRLSRLGEQIQETI 394
Query: 197 NGVHPESVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 236
NG ++F L + E TD LAAAL Q RP
Sbjct: 395 NG----DLDFMKNAVAELCQQLEVDTDLLAAALLQQVQQERP 432
>gi|288942738|ref|YP_003444978.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
vinosum DSM 180]
gi|288898110|gb|ADC63946.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
180]
Length = 662
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 123/216 (56%), Gaps = 5/216 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + T K +L+ ++ + G ++F +TK E++ L + A+E L+GD
Sbjct: 223 IEQHHCIVTRFHKLDVLTRIMELEPFDG-LLIFVRTKNATTELADKLKAHGFAAEPLNGD 281
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q RERT+ +QG+ VLVATDVAARGLD+ + +++Y++P DP +VHR GRTGR
Sbjct: 282 MNQEMRERTVERLKQGQLDVLVATDVAARGLDVERISHVVNYDIPTDPSAYVHRIGRTGR 341
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 203
AG+ G AIL+ +R ++S+ER + + PP + ES ++ + + E
Sbjct: 342 AGRAGRAILLVEPRERGLLKSIERVIRRPIPSMEPPSAAALSESRIDRFIGEIRKAQSEQ 401
Query: 204 -VEFFTPTAQRLIEEKGTDAL--AAALAQLSGFSRP 236
++FF R+ +E+ + L AAALA L+ RP
Sbjct: 402 DLDFFYRLLARISQEQEIEMLDIAAALAYLNQRERP 437
>gi|228473039|ref|ZP_04057796.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Capnocytophaga
gingivalis ATCC 33624]
gi|228275621|gb|EEK14398.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Capnocytophaga
gingivalis ATCC 33624]
Length = 588
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 101/157 (64%), Gaps = 3/157 (1%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
++VF +TKRD V+ L + ALHGD+SQ+QR+ + GFR + +LVATDVAAR
Sbjct: 252 SVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKGFRAKQIQMLVATDVAAR 311
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+D+ ++ +IHY+LP++ ET+ HRSGRTGRAGK G ++++ T S+ + ++++E+ +
Sbjct: 312 GIDVDDITHVIHYQLPDEIETYTHRSGRTGRAGKSGVSMVILTKSEAKRIKTIEKIIQKT 371
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNG--VHPESVEFF 207
FE+ S P ++ E + T+ V+P E+
Sbjct: 372 FEYKSIPSGMEICEIQLYHLANTIKDTQVNPAVNEYL 408
>gi|89092720|ref|ZP_01165673.1| putative ATP-dependent RNA helicase [Neptuniibacter caesariensis]
gi|89083232|gb|EAR62451.1| putative ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
Length = 427
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 102/163 (62%), Gaps = 2/163 (1%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 80
A+ I+ +A K ILS LIT K G+T+VF +TK+ DE++ L I + A+
Sbjct: 218 AKQIRQFAYQVDYGQKADILSYLIT-EGKWGQTLVFVRTKKRVDELTQYLCKEGINAAAI 276
Query: 81 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 140
HG+ SQ +R R LN F G VLVATDVAARGLDI ++ +++Y+LPN PE +VHR GR
Sbjct: 277 HGEKSQRERVRMLNEFIAGDLHVLVATDVAARGLDIESLPYVVNYDLPNQPEAYVHRIGR 336
Query: 141 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED 183
TGRAG+ G A+ + ++R ++ +E+ + K + P +ED
Sbjct: 337 TGRAGETGEAVSLVAPAEREFLQRIEKLIKQKIKLRPVPRIED 379
>gi|423480372|ref|ZP_17457062.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6X1-2]
gi|401148764|gb|EJQ56249.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6X1-2]
Length = 534
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 124/218 (56%), Gaps = 5/218 (2%)
Query: 24 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 82
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 83 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 142
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 143 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 201
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 202 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
+++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 DNLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|225390528|ref|ZP_03760252.1| hypothetical protein CLOSTASPAR_04283 [Clostridium asparagiforme
DSM 15981]
gi|225043410|gb|EEG53656.1| hypothetical protein CLOSTASPAR_04283 [Clostridium asparagiforme
DSM 15981]
Length = 595
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 121/210 (57%), Gaps = 9/210 (4%)
Query: 28 YAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQ 86
Y +K ++ L+ +YA +IVF TK+ DE+ AL +E LHGD+ Q
Sbjct: 248 YYYEVKPKNKVEVMCRLLDLYAPK-LSIVFCNTKKQVDELVQALQGRGYFAEGLHGDLKQ 306
Query: 87 HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 146
QR+R +N FR G+ +LVATDVAARG+D+ +V+ + +Y++P D E +VHR GRTGRAG+
Sbjct: 307 MQRDRVMNSFRNGRTDILVATDVAARGIDVGDVEAVFNYDIPQDDEYYVHRIGRTGRAGR 366
Query: 147 EGTAILMFTSSQRRTVRSLERDVGCKFEFV--SPPVVEDVLESSAEQVVATLNGVHPES- 203
EG A + + +R ++R CK + + P + D+ E E+++ + V +S
Sbjct: 367 EGKAFSLVVGREVYKLRDIQR--YCKTRIIPQAIPSLNDITEIKVEKILDQVEEVMNDSD 424
Query: 204 -VEFFTPTAQRLIEEKGTDA-LAAALAQLS 231
+ ++L+EE+ T LAAAL +++
Sbjct: 425 LSKMVGIIEKKLMEEEYTSLDLAAALLKMN 454
>gi|451348181|ref|YP_007446812.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens IT-45]
gi|449851939|gb|AGF28931.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens IT-45]
Length = 494
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 110/187 (58%), Gaps = 4/187 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLVATDVAARG
Sbjct: 245 IVFGRTKRRVDELTEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARG 304
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++E+ K
Sbjct: 305 LDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKNMLRAIEQTTKRKM 364
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ + P +++ LE + V L + ++ F+ A L+E+ DA+ A +
Sbjct: 365 DCMKEPTLDEALEGQQQVTVDRLRTAISENNLNFYMTAAAELLEDH--DAVTVVAAAIKM 422
Query: 233 FSRPPSS 239
++ P S
Sbjct: 423 ATKEPDS 429
>gi|407780170|ref|ZP_11127416.1| DEAD/DEAH box helicase [Nitratireductor pacificus pht-3B]
gi|407298047|gb|EKF17193.1| DEAD/DEAH box helicase [Nitratireductor pacificus pht-3B]
Length = 629
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 110/187 (58%), Gaps = 8/187 (4%)
Query: 48 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 106
Y + +VF T+ + ++ + + AL G++SQ++R L R G+ V VA
Sbjct: 241 YYEAKNALVFCNTRATVNHMTARFNNRGFSVVALSGELSQNERTHALQAMRDGRARVCVA 300
Query: 107 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 166
TDVAARG+D+PN++L++H +LP + ET +HRSGRTGRAG++G + L+ + RR L
Sbjct: 301 TDVAARGIDLPNLELVVHADLPTNAETLLHRSGRTGRAGRKGVSALIVPQNGRRRAERLL 360
Query: 167 RDVGCKFEFVSPPVVEDVLESSAEQVVATLN---GVHPESVEFFTPTAQRLIEEKGTDAL 223
RD + E+ +PP E VL E+++A N VH + ++F +RL+ E G + +
Sbjct: 361 RDAKVRVEWGNPPSAEAVLLRDDERLLADPNLGEKVHEDEIDFV----RRLLGEYGAEQV 416
Query: 224 AAALAQL 230
AAA +L
Sbjct: 417 AAAFVRL 423
>gi|219847371|ref|YP_002461804.1| DEAD/DEAH box helicase [Chloroflexus aggregans DSM 9485]
gi|219541630|gb|ACL23368.1| DEAD/DEAH box helicase domain protein [Chloroflexus aggregans DSM
9485]
Length = 550
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 89/131 (67%), Gaps = 1/131 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +T+++ DE+ L A+E+LHGD+SQ R+R + FR+G+ VLVATDVAARG
Sbjct: 243 IVFCRTRQEVDEIGERLQGRGYAAESLHGDLSQAVRDRVMRRFREGQLDVLVATDVAARG 302
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V +I+Y++P DPE++VHR GRTGRAG+ G AI T +RR ++++ER +
Sbjct: 303 LDIAEVSHVINYDVPTDPESYVHRIGRTGRAGRAGVAITFITPRERRMLQTIERVTRTRI 362
Query: 174 EFVSPPVVEDV 184
E P + DV
Sbjct: 363 ERCQMPTLADV 373
>gi|333908310|ref|YP_004481896.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas
posidonica IVIA-Po-181]
gi|333478316|gb|AEF54977.1| DEAD/DEAH box helicase domain protein [Marinomonas posidonica
IVIA-Po-181]
Length = 616
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 138/249 (55%), Gaps = 23/249 (9%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATS------------KRTILSDLITVYAKGGKT 54
M S QV N+ + +K+ ++TAT+ K L+ ++ + G
Sbjct: 192 MPSVIRQVANRHLNNPKEVKIVTKTSTATTISQKYWQVSGLHKLDALTRILEMNEHDG-M 250
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK E++ LT+ A EAL+GDISQ+ RERT++ ++G+ +LVATDV ARG
Sbjct: 251 IIFVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVDRIKKGQIDILVATDVVARG 310
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ V +++Y++P D E++VHR GRTGRAG+ GTAIL +RR ++++ER
Sbjct: 311 LDVERVSHVVNYDIPYDTESYVHRIGRTGRAGRSGTAILFVAHRERRMLQAIERATRQPI 370
Query: 174 EFVSPPVVEDVLESSA----EQVVATLNGVHPESVEFFTPTAQRLIEEKGTDAL--AAAL 227
E ++ P D+ E +++ T++ E+++FF Q ++ D L AAAL
Sbjct: 371 EKMNLPTASDINEQRVSRFKQRITDTMDN---ENLDFFLELVQSYQKDNEVDPLKMAAAL 427
Query: 228 AQLSGFSRP 236
A ++ P
Sbjct: 428 AHMAQGKTP 436
>gi|225016981|ref|ZP_03706173.1| hypothetical protein CLOSTMETH_00902 [Clostridium methylpentosum
DSM 5476]
gi|224950247|gb|EEG31456.1| hypothetical protein CLOSTMETH_00902 [Clostridium methylpentosum
DSM 5476]
Length = 563
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 143/272 (52%), Gaps = 17/272 (6%)
Query: 44 LITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFT 102
+I Y +I+F TKR DEV+ L S ++E LHGD+ Q QR + ++ F++G+
Sbjct: 238 IILQYHDPALSIIFCNTKRMVDEVTAFLDRSGYSAEGLHGDMKQSQRTKVMDSFKRGRTK 297
Query: 103 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 162
+LVATDVAARG+D+ NVD +I+Y++P + E +VHR GRTGRAGKEG A+ + S RR V
Sbjct: 298 ILVATDVAARGIDVNNVDYVINYDVPQNQEYYVHRIGRTGRAGKEGKAVTI--CSGRRQV 355
Query: 163 RSLE---RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVE-FFTPTAQRLIEEK 218
L R + S P +D+ S E VVA + + E ++ A+ L+++
Sbjct: 356 DELYHIVRMTKSTIKRESLPSGQDIERRSNEGVVARMEQKLAAAEELYYKEVAEELVQKG 415
Query: 219 GTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSR--------GFMSARSV 270
AA+A F RP + I + LQ R S F + ++ +
Sbjct: 416 YNPTTIAAVALEMAFGRPKTDFPEIKQFRPKAGLQGPRGS-FRKIEINIGRENHIAPNHI 474
Query: 271 MGFLSDVYPTAADEIGKIHIIADDRVQGAVFD 302
+G +++ + +IGKI I DD+ A+ D
Sbjct: 475 VGAITERSDLSGRDIGKIEIY-DDKTIVAIPD 505
>gi|116333167|ref|YP_794694.1| superfamily II DNA/RNA helicase [Lactobacillus brevis ATCC 367]
gi|116098514|gb|ABJ63663.1| Superfamily II DNA and RNA helicase [Lactobacillus brevis ATCC 367]
Length = 523
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 110/178 (61%), Gaps = 6/178 (3%)
Query: 54 TIVFTQTKRDADEVSLALTSIIASEA-LHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
TIVFT+TKR DE++ L + + A +HGD++Q +R + +N FR GK +LVATDVAAR
Sbjct: 242 TIVFTRTKRRVDEIASGLEARGYNAAGIHGDLTQKRRTQIMNDFRHGKLDILVATDVAAR 301
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+DI +V + +Y++P DP+++VHR GRTGRAGK G ++ T ++ +R +E+ +
Sbjct: 302 GIDINDVTHVYNYDIPQDPDSYVHRVGRTGRAGKHGVSMTFVTPNEMDYLREIEKLTKVR 361
Query: 173 FEFVSPPVVEDVLES---SAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAAL 227
+ PP E+ S +A++ +A L V+ E + A+ L+ E + L AAL
Sbjct: 362 MLPLKPPSDEEAFVSQLGAAKETIADL--VNKADKEKYAKAAESLLNEYDAEDLVAAL 417
>gi|366166269|ref|ZP_09466024.1| DEAD/DEAH box helicase [Acetivibrio cellulolyticus CD2]
Length = 544
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 99/163 (60%), Gaps = 2/163 (1%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + + +SK ILS LI G ++VF TKR DE++ +L S ++EALHGD
Sbjct: 218 IEQFYLEVSQSSKLEILSRLIDA-NNIGLSLVFCNTKRQVDELTSSLQSRGYSTEALHGD 276
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
+ Q QR R + FR+G+ +L+ATDVAARG+D+ NV+ + +Y+LP+D E +VHR GRTGR
Sbjct: 277 MKQDQRNRVMTKFRKGQIDILIATDVAARGIDVDNVEAVFNYDLPSDEEYYVHRIGRTGR 336
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 186
AGK G + + ++ ++R + PP DV E
Sbjct: 337 AGKTGKSFTFVVGREIHKLKDIQRYTKSTIHLIKPPTAMDVEE 379
>gi|408492465|ref|YP_006868834.1| ATP-dependent RNA helicase DbpA-like protein [Psychroflexus torquis
ATCC 700755]
gi|408469740|gb|AFU70084.1| ATP-dependent RNA helicase DbpA-like protein [Psychroflexus torquis
ATCC 700755]
Length = 586
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 89/120 (74%), Gaps = 1/120 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VF +TKRDA +V+ L ++ ALHGD+SQ QR+ +N FR+ + +LVATDVAARG
Sbjct: 246 VVFCRTKRDAQKVAEKLIEDGYSASALHGDLSQAQRDMVMNSFRRKQIQMLVATDVAARG 305
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ ++ +I+Y+LP++ E + HRSGRTGRAGKEG ++++ T S+ R ++ +ER +G KF
Sbjct: 306 IDVDDITHVINYQLPDEIEIYTHRSGRTGRAGKEGKSLVIVTKSEVRKIKQVERMIGQKF 365
>gi|114567412|ref|YP_754566.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114338347|gb|ABI69195.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 530
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 112/178 (62%), Gaps = 1/178 (0%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+++F +TKR+ADE++ LTS ++ALHGD+SQ +R+ ++GFRQG +LVATD+AAR
Sbjct: 244 SLIFCRTKRNADELARVLTSRGYNADALHGDMSQRERDHVMHGFRQGNTKILVATDLAAR 303
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLDI V + ++++P D ++++HR GRTGRAG+ G AI + +Q R +R +ER G +
Sbjct: 304 GLDIELVTHVFNFDIPEDLDSYIHRVGRTGRAGRSGIAITLVEPTQIRLLRMIERHTGKR 363
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQL 230
E P + + +E + ++ + E + A++L+++ + + AA +L
Sbjct: 364 IERALLPTLAEAVEKRQDLLLERVRQASAEPGDVCLSLAEKLMQQGDPEKMLAAALKL 421
>gi|288556913|ref|YP_003428848.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
gi|288548073|gb|ADC51956.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
Length = 539
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 111/181 (61%), Gaps = 4/181 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK+ E++ AL + ++ LHGD++Q QR+ + FR L+ATDVAARG
Sbjct: 243 ILFCRTKKGVAELTEALQARGYLADGLHGDLTQSQRDAVMKKFRDSSIEFLIATDVAARG 302
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ NV +I+Y++P DPE++VHR GRTGRAG++G A+ + T + + +RS+E+++
Sbjct: 303 IDVDNVTHVINYDIPQDPESYVHRIGRTGRAGRKGLALTLVTPREMKHLRSIEQEIKMAI 362
Query: 174 EFVSPPVVEDVLE---SSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQL 230
P +EDV+E SS +++V + E F P Q ++ + + + AAL ++
Sbjct: 363 PSQDVPTIEDVVEKQQSSWKKLVHDTIDTGGKEFELFKPLVQEVLADHSPEDVVAALLKM 422
Query: 231 S 231
+
Sbjct: 423 N 423
>gi|184200206|ref|YP_001854413.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila
DC2201]
gi|183580436|dbj|BAG28907.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila
DC2201]
Length = 719
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 116/190 (61%), Gaps = 10/190 (5%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
IVF +TK +E++ L + + A++GDI Q+ RERT++ R+GK +LVATDVAAR
Sbjct: 324 VIVFVRTKAATEEIADKLKARGYTAAAINGDIPQNLRERTVDSLREGKIDILVATDVAAR 383
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+ + L+++Y++P+D E++VHR GRTGRAG++G AIL T ++ +R++E+
Sbjct: 384 GLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRKGEAILFMTPREKYLLRAIEKATRQP 443
Query: 173 FEFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA--LAAA 226
E + P ++V ++ A+Q+ T+ E + F +R E DA +AAA
Sbjct: 444 VEQMRVPTTDEVNQTRKDNFAQQIEETIES---EDLGLFRELVERYESEHDVDAVEIAAA 500
Query: 227 LAQLSGFSRP 236
LA ++ RP
Sbjct: 501 LAVIAQNGRP 510
>gi|317051368|ref|YP_004112484.1| DEAD/DEAH box helicase domain-containing protein
[Desulfurispirillum indicum S5]
gi|316946452|gb|ADU65928.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum
S5]
Length = 488
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 108/178 (60%), Gaps = 4/178 (2%)
Query: 55 IVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VF +TK DADE++ L +EALHGD+SQ+QRE+ L+ FR+ + +LVATDVAARG
Sbjct: 251 VVFCRTKVDADEITRRLQHRKYVTEALHGDVSQNQREKILDAFRRKRLNILVATDVAARG 310
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ N+ +I++ LP PE++VHR GRTGRAGKEGTAI + ++ R + +++
Sbjct: 311 IDVQNLTHVINFSLPQSPESYVHRVGRTGRAGKEGTAITFISPAEFRKLAFIQKITQTTI 370
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPESVEF--FTPTAQRLIEEKGTDALAAALAQ 229
P V V++ E + L + ES E+ AQ ++++ + AAL Q
Sbjct: 371 RRQELPDVNTVIKLKKESIAGALENL-IESGEYQQHGDFAQDILQKHSAQNIVAALIQ 427
>gi|91794665|ref|YP_564316.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
gi|91716667|gb|ABE56593.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
Length = 611
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 11/190 (5%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
I+F +T+ E++ L + AS LHGD++Q RER ++ ++GK +L+ATDVAAR
Sbjct: 248 VIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIATDVAAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+ + +++Y++P D E +VHR GRTGRAG+ G AIL TS + R +R++ER +
Sbjct: 308 GLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNSR 367
Query: 173 FEFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIE--EKGTDALAAA 226
+ P E V E E + TLNG ++F L + E TD LAAA
Sbjct: 368 IAPMKVPSPESVAERRLSRLGELIQETLNG----DLDFMKSAVAELCQQLEVDTDLLAAA 423
Query: 227 LAQLSGFSRP 236
L Q RP
Sbjct: 424 LLQQVQAERP 433
>gi|296132950|ref|YP_003640197.1| DEAD/DEAH box helicase [Thermincola potens JR]
gi|296031528|gb|ADG82296.1| DEAD/DEAH box helicase domain protein [Thermincola potens JR]
Length = 529
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 106/179 (59%), Gaps = 2/179 (1%)
Query: 55 IVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TKR DE+ +L T +E LHGD++Q QR + + F+ G+ LVATDVAARG
Sbjct: 247 IIFCKTKRGVDELVASLETRGYQAEGLHGDLTQAQRNKVMRKFKNGQVDYLVATDVAARG 306
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI NV +I+Y++P DPE +VHR GRTGRAG+ G AI + R +R +E+ +G +
Sbjct: 307 LDIENVSHVINYDIPQDPEVYVHRIGRTGRAGRSGKAITFIVPEEYRQLRLIEKIIGARI 366
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 231
+ P + D+ E Q++ + N ++ ++ + Q L + +A+A +L+
Sbjct: 367 ARKNLPSIADIFERQKVQMIDKVANTINGGQLDIYRDIVQELAADYNLIDIASAALKLA 425
>gi|375361121|ref|YP_005129160.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|371567115|emb|CCF03965.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
Length = 511
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 110/187 (58%), Gaps = 4/187 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLVATDVAARG
Sbjct: 262 IVFGRTKRRVDELTEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARG 321
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++E+ K
Sbjct: 322 LDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKNMLRAIEQTTKRKM 381
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ + P +++ LE + V L + ++ F+ A L+E+ DA+ A +
Sbjct: 382 DRMKEPTLDEALEGQQQVTVDRLRTAISENNLNFYMTAAAELLEDH--DAVTVVAAAIKM 439
Query: 233 FSRPPSS 239
++ P S
Sbjct: 440 ATKEPDS 446
>gi|302338831|ref|YP_003804037.1| DEAD/DEAH box helicase [Spirochaeta smaragdinae DSM 11293]
gi|301636016|gb|ADK81443.1| DEAD/DEAH box helicase domain protein [Spirochaeta smaragdinae DSM
11293]
Length = 542
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/267 (33%), Positives = 137/267 (51%), Gaps = 14/267 (5%)
Query: 55 IVFTQTKRDADEV-SLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VF +TK D D V + L + LHGDISQ QRERTL F++ +LVATDVAARG
Sbjct: 248 LVFCRTKNDVDTVVNHLLDRGYDAAPLHGDISQAQRERTLGKFKRQNINILVATDVAARG 307
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ N+ +I+Y LP DPE +VHR GRTGRAG EGTAI T S+ + + + +
Sbjct: 308 IDVNNLTHVINYSLPQDPEAYVHRIGRTGRAGNEGTAITFITPSEYKRLMFIRKITKTDI 367
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPESV-EFFTPTAQRLIEEKG---TDALAAALAQ 229
+ P V D++++ +++ L + + + + + A+R +EE G + LAA L+
Sbjct: 368 KKSQLPKVADIIDAKRKKIDEDLGAIFTKEIDQSYYDWAKRWLEESGKSPSQILAALLSL 427
Query: 230 LSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGF--------MSARSVMGFLSDVYPTA 281
P+S I +G Q+ +R F ++ R ++ L+ P
Sbjct: 428 SFNDDLNPNSYGEIAEVRGGDRSQIDHHGT-ARLFVALGKKDRITPRQLIDLLTSRSPVR 486
Query: 282 ADEIGKIHIIADDRVQGAVFDLPEEIA 308
+IG I I+ + F L E+I
Sbjct: 487 PKQIGDIQIMENFSFVTVPFFLAEKIV 513
>gi|56963965|ref|YP_175696.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
gi|56910208|dbj|BAD64735.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
Length = 537
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 108/180 (60%), Gaps = 4/180 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK+ E++ AL + + LHGD++Q QR+ + FR L+ATDVAARG
Sbjct: 243 ILFCRTKKGVAELTEALQARGYLVDGLHGDLTQSQRDVVMKKFRDSSIEFLIATDVAARG 302
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ NV +I+Y++P DPE++VHR GRTGRAG+ G AI + T + + +RS+E+++
Sbjct: 303 IDVENVTHVINYDIPQDPESYVHRIGRTGRAGRTGAAITLVTPREMKHLRSIEKEIKMHI 362
Query: 174 EFVSPPVVEDVLE---SSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQL 230
S P +E+V+E SS + ++ + +E F P ++ E+ + AAL +L
Sbjct: 363 PSASVPTIEEVVEKQQSSWKNLIQDTIEQGGKEMELFLPLVDEILAEQDPKQVVAALLKL 422
>gi|159901480|ref|YP_001547727.1| DEAD/DEAH box helicase [Herpetosiphon aurantiacus DSM 785]
gi|159894519|gb|ABX07599.1| DEAD/DEAH box helicase domain protein [Herpetosiphon aurantiacus
DSM 785]
Length = 584
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 108/185 (58%), Gaps = 7/185 (3%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK DE+ L + +E LHGD+SQ R+R + FR+ + +LVATDVAARG
Sbjct: 244 IIFCRTKAMVDELGEKLLARGYGAELLHGDLSQAMRDRVMKRFREEQVEILVATDVAARG 303
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI +V +I+Y++P DPE +VHR GRTGRAG+ G A+ + T +RR +R++ER G
Sbjct: 304 LDIEHVSHVINYDIPLDPEAYVHRIGRTGRAGRSGVAVTLVTPRERRQLRTIERMTGAPI 363
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGV---HPES--VEFFTPTAQRLIEEKG-TDALAAAL 227
+ + P + DV+ E L + H E +E + A+ L E+ TD AAA
Sbjct: 364 QRLRLPTIADVVARRREAFKDNLRELIEQHNEQGGLEQYLVLAEELAEQYSPTDLAAAAF 423
Query: 228 AQLSG 232
+ G
Sbjct: 424 KMMLG 428
>gi|402573181|ref|YP_006622524.1| DNA/RNA helicase [Desulfosporosinus meridiei DSM 13257]
gi|402254378|gb|AFQ44653.1| DNA/RNA helicase, superfamily II [Desulfosporosinus meridiei DSM
13257]
Length = 537
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 96/146 (65%), Gaps = 1/146 (0%)
Query: 52 GKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 110
G+ I+F +TKR DE+ +AL + ++ALHGD+SQ QR+R + FR GK +L+ATDVA
Sbjct: 247 GQGIIFCRTKRGVDELVVALEARGYFADALHGDLSQQQRDRVMKRFRDGKTELLIATDVA 306
Query: 111 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 170
ARGLDI NV +I++++P DP ++VHR GRTGR G++G AI + + + R +R +E +
Sbjct: 307 ARGLDINNVTHVINFDIPQDPVSYVHRIGRTGRIGRKGQAITLISPKEYRQLRLIENLIK 366
Query: 171 CKFEFVSPPVVEDVLESSAEQVVATL 196
+ + P + D+ E AE + L
Sbjct: 367 TRIKRQELPSLADISERQAENIKMQL 392
>gi|409041060|gb|EKM50546.1| hypothetical protein PHACADRAFT_263884 [Phanerochaete carnosa
HHB-10118-sp]
Length = 647
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 99/160 (61%), Gaps = 5/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + I+ KR++L D+++ +GG T+VF +TKR AD
Sbjct: 395 VFLSVGRVGSTSENITQKIEY----VEDPDKRSVLLDILSAQDEGGLTLVFVETKRMADM 450
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S T+ IA+ ++HGD SQ +RE L FR G+ VLVAT VAARGLDIPNV +I+Y
Sbjct: 451 LSDFLYTNRIAATSIHGDRSQRERETALQTFRTGRTPVLVATAVAARGLDIPNVTHVINY 510
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP+D + +VHR GRTGRAG G + F + VR L
Sbjct: 511 DLPSDIDDYVHRIGRTGRAGNVGISTAFFNRGNKNIVRDL 550
>gi|326335491|ref|ZP_08201678.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga sp.
oral taxon 338 str. F0234]
gi|325692257|gb|EGD34209.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga sp.
oral taxon 338 str. F0234]
Length = 572
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 101/157 (64%), Gaps = 3/157 (1%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
++VF +TKRD V+ L + ALHGD+SQ+QR+ + GFR + +LVATDVAAR
Sbjct: 245 SVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKGFRAKQIQMLVATDVAAR 304
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+D+ ++ +IHY+LP++ ET+ HRSGRTGRAGK G ++++ T S+ + ++++ER +
Sbjct: 305 GIDVDDITHVIHYQLPDEIETYTHRSGRTGRAGKSGVSMVILTKSETKRIKTIERIIQKT 364
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNG--VHPESVEFF 207
FE+ + P ++ E + T+ V+P E+
Sbjct: 365 FEYKTIPSGMEICEIQLYHLANTIKDTQVNPAVNEYL 401
>gi|424736339|ref|ZP_18164799.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZB2]
gi|422949942|gb|EKU44315.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZB2]
Length = 507
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 120/217 (55%), Gaps = 6/217 (2%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI--IA 76
E + I Y + + K +LS L+ V+ + I+F +TKR DE++ AL SI
Sbjct: 209 ELTVDNIDQYFVKSAEREKFDVLSRLLNVH-QPELAIIFGRTKRRVDELAQAL-SIRGYL 266
Query: 77 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 136
+E +HGD+SQ +R L F++ K +LVATDVAARGLDI V + ++++P DPE++VH
Sbjct: 267 AEGIHGDLSQAKRISVLRQFKENKIDILVATDVAARGLDISGVTHVYNFDIPQDPESYVH 326
Query: 137 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 196
R GRTGRAGK G A+ T + +R +E + + PP ++ LE V TL
Sbjct: 327 RIGRTGRAGKSGLAVTFVTPREMGYLRIVEETTKKRMTPLRPPTTDEALEGQQRLAVETL 386
Query: 197 NGVHPESV--EFFTPTAQRLIEEKGTDALAAALAQLS 231
G+ + ++ T A+ L D +AAAL L+
Sbjct: 387 EGLIANNNLGDYRTFAAELLENHDAVDVVAAALRSLT 423
>gi|374995988|ref|YP_004971487.1| DNA/RNA helicase [Desulfosporosinus orientis DSM 765]
gi|357214354|gb|AET68972.1| DNA/RNA helicase, superfamily II [Desulfosporosinus orientis DSM
765]
Length = 536
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 94/142 (66%), Gaps = 1/142 (0%)
Query: 52 GKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 110
G+ I+F +TKR DE+ +AL + ++ALHGD+SQ QR+R + FR GK +LVATDVA
Sbjct: 247 GQGIIFCRTKRGVDELVVALEARGYFADALHGDLSQQQRDRVMKRFRDGKSELLVATDVA 306
Query: 111 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 170
ARGLDI NV +I++++P DP ++VHR GRTGR G++G AI + + + R +R +E +
Sbjct: 307 ARGLDINNVTHVINFDIPQDPVSYVHRIGRTGRVGRKGQAITLISPKEYRQLRLIENLIK 366
Query: 171 CKFEFVSPPVVEDVLESSAEQV 192
+ P + D+ E AE +
Sbjct: 367 TRIRRQELPSMADISERQAENI 388
>gi|219683483|ref|YP_002469866.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
AD011]
gi|384191324|ref|YP_005577072.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
BB-12]
gi|384192469|ref|YP_005578216.1| Hydrolase acting on acid anhydrides in phosphorous-containing
anhydrides [Bifidobacterium animalis subsp. lactis CNCM
I-2494]
gi|219621133|gb|ACL29290.1| possible ATP-dependent RNA helicase [Bifidobacterium animalis
subsp. lactis AD011]
gi|289178816|gb|ADC86062.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
BB-12]
gi|340365206|gb|AEK30497.1| Hydrolase acting on acid anhydrides in phosphorous-containing
anhydrides [Bifidobacterium animalis subsp. lactis CNCM
I-2494]
Length = 658
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 97/146 (66%), Gaps = 5/146 (3%)
Query: 52 GKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 110
G+ I+FT+TK A +++ LT S I + LHG++SQHQR+R L F G+ VLVATDVA
Sbjct: 293 GRRILFTRTKFQAKKLAHTLTQSGIPAAELHGNLSQHQRDRNLQVFESGQVNVLVATDVA 352
Query: 111 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 170
ARG+D+ NV L++ E P DP++F HRSGRT RAG+ G + + T Q+R +R L ++V
Sbjct: 353 ARGIDVSNVGLVVQVEPPEDPKSFTHRSGRTARAGQSGDVVTLMTPDQKRKIRHLFKEVD 412
Query: 171 CKFE--FVSP--PVVEDVLESSAEQV 192
K + V+P P V++++ A+ V
Sbjct: 413 IKLKPVEVTPESPQVQELVGQKADPV 438
>gi|70994563|ref|XP_752059.1| ATP dependent RNA helicase (Dbp1) [Aspergillus fumigatus Af293]
gi|74671260|sp|Q4WP13.1|DED1_ASPFU RecName: Full=ATP-dependent RNA helicase ded1
gi|66849693|gb|EAL90021.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus fumigatus
Af293]
Length = 674
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 95/160 (59%), Gaps = 5/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + ++ KR++L D++ + G T++F +TKR AD
Sbjct: 410 VFLSVGRVGSTSENITQKVEY----VEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADA 465
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S L + A+HGD +Q +RER L FR G+ +LVAT VAARGLDIPNV +I+Y
Sbjct: 466 LSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINY 525
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP D + +VHR GRTGRAG G A F S R VR L
Sbjct: 526 DLPTDIDDYVHRIGRTGRAGNTGIATAFFNRSNRGVVREL 565
>gi|299538292|ref|ZP_07051577.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
gi|298726494|gb|EFI67084.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
Length = 507
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 120/217 (55%), Gaps = 6/217 (2%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI--IA 76
E + I Y + + K +LS L+ V+ + I+F +TKR DE++ AL SI
Sbjct: 209 ELTVDNIDQYFVKSAEREKFDVLSRLLNVH-QPELAIIFGRTKRRVDELAQAL-SIRGYL 266
Query: 77 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 136
+E +HGD+SQ +R L F++ K +LVATDVAARGLDI V + ++++P DPE++VH
Sbjct: 267 AEGIHGDLSQAKRISVLRQFKENKIDILVATDVAARGLDISGVTHVYNFDIPQDPESYVH 326
Query: 137 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 196
R GRTGRAGK G A+ T + +R +E + + PP ++ LE V TL
Sbjct: 327 RIGRTGRAGKSGLAVTFVTPREMGYLRIVEETTKKRMTPLRPPTTDEALEGQQRLAVETL 386
Query: 197 NGVHPESV--EFFTPTAQRLIEEKGTDALAAALAQLS 231
G+ + ++ T A+ L D +AAAL L+
Sbjct: 387 EGLIANNNLGDYRTFAAELLENHDAVDVVAAALRSLT 423
>gi|167752241|ref|ZP_02424368.1| hypothetical protein ALIPUT_00483 [Alistipes putredinis DSM 17216]
gi|167660482|gb|EDS04612.1| DEAD/DEAH box helicase [Alistipes putredinis DSM 17216]
Length = 650
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 109/346 (31%), Positives = 167/346 (48%), Gaps = 31/346 (8%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF++T+ AD++ L A+E LHGDISQ QRE+ L F++ + +LVATDVAARG
Sbjct: 247 IVFSRTRTGADDIVAKLLERGYAAEVLHGDISQAQREKILGKFKKKQVNILVATDVAARG 306
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ N+ +I+Y LP D +++VHR GRTGRAG +GTAI + S+ R L+R +
Sbjct: 307 IDVSNLTHVINYSLPQDSDSYVHRIGRTGRAGNQGTAITFISPSEMRKFGFLKRTIKADI 366
Query: 174 EFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLS- 231
+ P D++ + ++ L+ V ES T A L+E + +AL +L+
Sbjct: 367 KLEQLPTPADIIATKRNKIKEDLDAIVESESYGECTGMAAELLESYPPEVALSALLRLAF 426
Query: 232 ----GFSRPPSSRSLINHEQGWVTLQLTRDSAF-SRGFMSARSVMGFLSDVYPTAADEIG 286
S P RS+ +G + L AF +R R + L + +I
Sbjct: 427 KNELSESSYPEIRSIDVDRKGKARIFL----AFGARDGYDTRKTVRLLKQECGLSDHDID 482
Query: 287 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNY-GRFS 345
+ ++ D FD E++ + L ++ G I++I+K D PS+ GR S
Sbjct: 483 DVRVMEDFSFATVPFDQAEKVVRTL--NKLSHGRPIAEISK------DSPSARTSGGRQS 534
Query: 346 SRDRFS--RGGGSRFSRGGARGGARGGGSM--------DRRGFRSS 381
R R S R G + +R R S+ DR G R S
Sbjct: 535 HRRRESDTRSGRKTGRKPESRESYRQDSSVQEAFGAPDDRNGHRKS 580
>gi|183601427|ref|ZP_02962797.1| possible ATP-dependent RNA helicase [Bifidobacterium animalis
subsp. lactis HN019]
gi|241191073|ref|YP_002968467.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|241196479|ref|YP_002970034.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|384194065|ref|YP_005579811.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
BLC1]
gi|384195631|ref|YP_005581376.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
V9]
gi|387820940|ref|YP_006300983.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
B420]
gi|387822618|ref|YP_006302567.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
Bi-07]
gi|423679599|ref|ZP_17654475.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
BS 01]
gi|183219033|gb|EDT89674.1| possible ATP-dependent RNA helicase [Bifidobacterium animalis
subsp. lactis HN019]
gi|240249465|gb|ACS46405.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|240251033|gb|ACS47972.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|295794062|gb|ADG33597.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
V9]
gi|345282924|gb|AEN76778.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
BLC1]
gi|366041243|gb|EHN17747.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
BS 01]
gi|386653641|gb|AFJ16771.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
B420]
gi|386655226|gb|AFJ18355.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
Bi-07]
Length = 645
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 97/146 (66%), Gaps = 5/146 (3%)
Query: 52 GKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 110
G+ I+FT+TK A +++ LT S I + LHG++SQHQR+R L F G+ VLVATDVA
Sbjct: 280 GRRILFTRTKFQAKKLAHTLTQSGIPAAELHGNLSQHQRDRNLQVFESGQVNVLVATDVA 339
Query: 111 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 170
ARG+D+ NV L++ E P DP++F HRSGRT RAG+ G + + T Q+R +R L ++V
Sbjct: 340 ARGIDVSNVGLVVQVEPPEDPKSFTHRSGRTARAGQSGDVVTLMTPDQKRKIRHLFKEVD 399
Query: 171 CKFE--FVSP--PVVEDVLESSAEQV 192
K + V+P P V++++ A+ V
Sbjct: 400 IKLKPVEVTPESPQVQELVGQKADPV 425
>gi|257064977|ref|YP_003144649.1| DNA/RNA helicase [Slackia heliotrinireducens DSM 20476]
gi|256792630|gb|ACV23300.1| DNA/RNA helicase, superfamily II [Slackia heliotrinireducens DSM
20476]
Length = 657
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 100/167 (59%), Gaps = 4/167 (2%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYAKGG-KTIVFTQTKRDADEVSLALTSI-IASEA 79
A+ + Y I T K +L+ I KGG + IVFT+TK AD + L I I +EA
Sbjct: 219 ADLVDQYIIWTGRREKPALLNAFIR--EKGGFRVIVFTKTKGGADNCTRRLCKIGIGAEA 276
Query: 80 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 139
+H D SQ QR+R L FR+GK V+VATDV ARG+D+P VD +++Y+LP PE +VHR G
Sbjct: 277 IHADRSQAQRQRALERFREGKTHVIVATDVLARGIDVPEVDYVVNYDLPMMPEDYVHRIG 336
Query: 140 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 186
RTGRAG G A+ T + +RS+++ +G + + ED E
Sbjct: 337 RTGRAGVAGYAVSFVTPDTKNLLRSIQKFIGEDIQVMEFKAGEDAYE 383
>gi|56552313|ref|YP_163152.1| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis
subsp. mobilis ZM4]
gi|260753995|ref|YP_003226888.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|384412590|ref|YP_005621955.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|56543887|gb|AAV90041.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis ZM4]
gi|258553358|gb|ACV76304.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|335932964|gb|AEH63504.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 458
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 100/161 (62%), Gaps = 5/161 (3%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYAKGG--KTIVFTQTKRDADEVSLALTSI-IASE 78
AE ++ + I + K+ +L+ IT+ G + +VFT+TK AD V L + + +
Sbjct: 221 AERVEQFGIFVNQSEKQALLT--ITLKNTPGLDRALVFTRTKHGADRVVRHLEAAGLPAA 278
Query: 79 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS 138
A+HG+ SQ QRER LN FR G+ +LVATD+AARG+D+P V + +YELPN E +VHR
Sbjct: 279 AIHGNKSQPQRERALNAFRNGRLKILVATDIAARGIDVPGVSHVFNYELPNVAEQYVHRI 338
Query: 139 GRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 179
GRT RAG++G AI + +R +RS+ER K + + P
Sbjct: 339 GRTARAGRDGQAISFIANDERSYLRSIERLTRVKLQILPLP 379
>gi|421732891|ref|ZP_16172007.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|407073252|gb|EKE46249.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 494
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 110/187 (58%), Gaps = 4/187 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLVATDVAARG
Sbjct: 245 IVFGRTKRRVDELTEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARG 304
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++E+ K
Sbjct: 305 LDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKNMLRAIEQTTKRKM 364
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ + P +++ LE + V L + ++ F+ A L+E+ DA+ A +
Sbjct: 365 DRMKEPTLDEALEGQQQVTVDRLRTAISENNLNFYMTAAAELLEDH--DAVTVVAAAIKM 422
Query: 233 FSRPPSS 239
++ P S
Sbjct: 423 ATKEPDS 429
>gi|397677505|ref|YP_006519043.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis ATCC
29191]
gi|395398194|gb|AFN57521.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis ATCC 29191]
Length = 458
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 100/161 (62%), Gaps = 5/161 (3%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYAKGG--KTIVFTQTKRDADEVSLALTSI-IASE 78
AE ++ + I + K+ +L+ IT+ G + +VFT+TK AD V L + + +
Sbjct: 221 AERVEQFGIFVNQSEKQALLT--ITLKNTPGLDRALVFTRTKHGADRVVRHLEAAGLPAA 278
Query: 79 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS 138
A+HG+ SQ QRER LN FR G+ +LVATD+AARG+D+P V + +YELPN E +VHR
Sbjct: 279 AIHGNKSQPQRERALNAFRNGRLKILVATDIAARGIDVPGVSHVFNYELPNVAEQYVHRI 338
Query: 139 GRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 179
GRT RAG++G AI + +R +RS+ER K + + P
Sbjct: 339 GRTARAGRDGQAISFIANDERSYLRSIERLTRVKLQILPLP 379
>gi|402831197|ref|ZP_10879889.1| DEAD/DEAH box helicase [Capnocytophaga sp. CM59]
gi|402282894|gb|EJU31421.1| DEAD/DEAH box helicase [Capnocytophaga sp. CM59]
Length = 581
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 101/157 (64%), Gaps = 3/157 (1%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
++VF +TKRD ++ L + ALHGD+SQ+QR+ + GFR + +LVATDVAAR
Sbjct: 245 SVVFCRTKRDTQAIAEKLIEDGYNAAALHGDLSQNQRDLVMKGFRAKQIQMLVATDVAAR 304
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+D+ ++ +IHY+LP++ ET+ HRSGRTGRAGK G ++++ T S+ + ++++E+ +
Sbjct: 305 GIDVDDITHVIHYQLPDEIETYTHRSGRTGRAGKSGVSMVILTKSEAKRIKTIEKIIQKT 364
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNG--VHPESVEFF 207
FE+ S P ++ E + T+ V+P E+
Sbjct: 365 FEYKSIPSGMEICEIQLYHLANTIKDTQVNPAVNEYL 401
>gi|330994757|ref|ZP_08318679.1| Cold-shock DEAD box protein A-like protein [Gluconacetobacter sp.
SXCC-1]
gi|329758018|gb|EGG74540.1| Cold-shock DEAD box protein A-like protein [Gluconacetobacter sp.
SXCC-1]
Length = 376
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 90/127 (70%)
Query: 53 KTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+ +VF +T+++AD V+ A+++++ + A+HGD SQ +RER L FRQG+ VLVATDV AR
Sbjct: 249 RVMVFVRTRQEADGVARAISALVPAIAIHGDHSQARRERMLRDFRQGRVGVLVATDVMAR 308
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+DI +V L+I++++P PE++VHR GRT RAG+ G A+ + +R+ +R +ER G +
Sbjct: 309 GIDIDDVALVINHDIPPQPESYVHRIGRTARAGRRGVAVALCAPEERQALREIERLTGQR 368
Query: 173 FEFVSPP 179
S P
Sbjct: 369 IRIASLP 375
>gi|334144539|ref|YP_004537695.1| DEAD/DEAH box helicase domain-containing protein
[Thioalkalimicrobium cyclicum ALM1]
gi|333965450|gb|AEG32216.1| DEAD/DEAH box helicase domain protein [Thioalkalimicrobium cyclicum
ALM1]
Length = 599
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 112/181 (61%), Gaps = 4/181 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK E++ L + A+ AL+GDI+Q+ RER ++ ++GK +L+ATDV ARG
Sbjct: 251 IIFVRTKTATIELAEKLEARGYAAAALNGDIAQNHRERIVDQLKKGKIDILIATDVVARG 310
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + +++Y++P D E++VHR GRTGRAG+ G AIL +RR ++ +ER K
Sbjct: 311 LDVERITHVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFVAPRERRLLQQIERATNKKI 370
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDAL--AAALAQL 230
+ ++ P +D+ + E+ A + + + E +EF+ + L + AL AAALA+L
Sbjct: 371 DMLTLPSTQDINDQRVEKFKARITDALEQEGLEFYQQMIEDLQQSSNVPALEIAAALAKL 430
Query: 231 S 231
+
Sbjct: 431 A 431
>gi|374329697|ref|YP_005079881.1| DEAD/DEAH box helicase [Pseudovibrio sp. FO-BEG1]
gi|359342485|gb|AEV35859.1| DEAD/DEAH box helicase domain protein [Pseudovibrio sp. FO-BEG1]
Length = 483
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 103/156 (66%), Gaps = 6/156 (3%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 77
EK+ + ++ ++SKR L D+++ + IVFT+TKR AD VS L ++S
Sbjct: 218 EKIDQSVRFL----NSSSKRAALLDILS-EDDIERAIVFTRTKRGADRVSGHLEKAGLSS 272
Query: 78 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
A+HG+ SQ RE++L+GF+ G+ +LVATD+AARG+DI V +++YELPN PE +VHR
Sbjct: 273 AAIHGNKSQRNREKSLDGFKNGRIKILVATDIAARGIDIDGVSHVVNYELPNVPEAYVHR 332
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
GRT RAGK G A+ + ++++ +R +ER +G K
Sbjct: 333 IGRTARAGKSGVAVSLCDATEQPYLRDIERLIGRKI 368
>gi|268680741|ref|YP_003305172.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
gi|268618772|gb|ACZ13137.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
DSM 6946]
Length = 583
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 93/136 (68%), Gaps = 1/136 (0%)
Query: 53 KTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111
K+IVF +TK++ D +S L ++ A++ LHGD+ Q+QRE + FR + +LVATDVAA
Sbjct: 243 KSIVFCRTKKEVDRLSTQLMAVGYAAKGLHGDMEQNQRESVIKAFRSSQIEILVATDVAA 302
Query: 112 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 171
RGL++ ++ + +Y +P DPE++VHR GRTGRAGK+GTAI + T + +++ + + VG
Sbjct: 303 RGLNVADISHVFNYHMPFDPESYVHRIGRTGRAGKKGTAITLVTPIEFHSMQRIGKKVGS 362
Query: 172 KFEFVSPPVVEDVLES 187
K E P + DV E+
Sbjct: 363 KIEHRIVPNLRDVKEN 378
>gi|170077242|ref|YP_001733880.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
gi|12003026|gb|AAG43442.1|AF186181_2 ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
gi|169884911|gb|ACA98624.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
Length = 487
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 122/213 (57%), Gaps = 16/213 (7%)
Query: 26 KLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDI 84
++Y I + + +L I A I+F +TKR A E++ L +++ HGD+
Sbjct: 219 EVYMIPRGWSKTKALLP--ILEMANPESAIIFVRTKRTASELTNELVEAGQSADEYHGDL 276
Query: 85 SQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 144
+Q+QRE+ + F+ GK ++VATD+AARGLD+ N+ +I+++LP++ E+++HR GRTGRA
Sbjct: 277 NQNQREKLVRRFKDGKIKMIVATDIAARGLDVENLSHVINFDLPDNTESYIHRIGRTGRA 336
Query: 145 GKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV-------LESSAEQVVATLN 197
GK GTAI + S RR +R +ER V + + P +V LE+ + +A
Sbjct: 337 GKTGTAIALVEPSDRRLLRQIERRVKQSLKVSTIPSRTEVEAQRVTRLETQVREALAG-- 394
Query: 198 GVHPESVEFFTPTAQRLIEEKGTDALAAALAQL 230
E + F P +RL +E A+AAA+ Q+
Sbjct: 395 ----ERMASFLPIVKRLGDEYDPQAIAAAVLQM 423
>gi|388857567|emb|CCF48923.1| probable DED1-ATP-dependent RNA helicase [Ustilago hordei]
Length = 663
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 97/160 (60%), Gaps = 5/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + I+ KR++L D++ GG T++F +TKR AD
Sbjct: 402 VFLSVGRVGSTSENITQKIEY----VEDEDKRSVLLDVLASMPSGGLTLIFVETKRMADM 457
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S L S IA+ ++HGD +Q +RER L FR GK ++VAT VAARGLDIPNV +++Y
Sbjct: 458 LSDFLLRSNIAATSIHGDRTQRERERALELFRSGKTPIMVATAVAARGLDIPNVTHVVNY 517
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP+D + +VHR GRTGRAG G A F + R L
Sbjct: 518 DLPSDVDDYVHRIGRTGRAGNTGHATAFFNRGNKNITRDL 557
>gi|386757060|ref|YP_006230276.1| DEAD/DEAH box helicase [Bacillus sp. JS]
gi|384930342|gb|AFI27020.1| DEAD/DEAH box helicase [Bacillus sp. JS]
Length = 511
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 107/179 (59%), Gaps = 2/179 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLVATDVAARG
Sbjct: 262 IVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARG 321
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++E+ K
Sbjct: 322 LDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKM 381
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 231
+ + P +++ LE + V L + ++ F+ A L+E+ + AA ++S
Sbjct: 382 DRMKEPTLDEALEGQQQVTVERLRTAISENNLNFYMTAAAELLEDHDAVTVVAAAIKMS 440
>gi|162148769|ref|YP_001603230.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter diazotrophicus
PAl 5]
gi|161787346|emb|CAP56941.1| putative ATP-dependent RNA helicase rhlE [Gluconacetobacter
diazotrophicus PAl 5]
Length = 390
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 91/129 (70%), Gaps = 1/129 (0%)
Query: 51 GGKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 109
GG+T+VFT+TK+ AD ++ L T + + ALHGD Q +R+RTL+ FR+G+ VLVATDV
Sbjct: 261 GGRTMVFTRTKQAADALARTLNTGGVTAAALHGDHGQVRRDRTLDDFRRGRLLVLVATDV 320
Query: 110 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 169
ARG+D+ V L++++++P PET++HR GRT RAG+ GTA+ + ++R +R +ER
Sbjct: 321 MARGIDVEGVALVVNFDIPEQPETYIHRIGRTARAGRRGTALSLCDPAERLKLRDIERQS 380
Query: 170 GCKFEFVSP 178
G + + P
Sbjct: 381 GARITVIDP 389
>gi|428773406|ref|YP_007165194.1| DEAD/DEAH box helicase [Cyanobacterium stanieri PCC 7202]
gi|428687685|gb|AFZ47545.1| DEAD/DEAH box helicase domain protein [Cyanobacterium stanieri PCC
7202]
Length = 483
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 109/181 (60%), Gaps = 8/181 (4%)
Query: 55 IVFTQTKRDADEVSLALTSIIAS-EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TKR A E++ L S + HGD+SQ QRER + +R GK V+VATD+AARG
Sbjct: 246 IIFVRTKRTASELTSKLQEAGQSVDEYHGDLSQQQRERLIQRWRDGKIKVVVATDIAARG 305
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ ++ + +++LP++ ET++HR GRTGRAGKEG AI + S RR +R +ER +
Sbjct: 306 LDVSDLTHVFNFDLPDNTETYIHRIGRTGRAGKEGKAIALVEPSDRRLLRQIERRLKQSI 365
Query: 174 EFVSPP----VVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 229
+ P V + EQ+ +L+G E + F P + L +E + A+AAA+ Q
Sbjct: 366 TVETVPNRSTVEAKRMLKLKEQIQESLSG---ERLASFLPMVKELNDEYDSSAIAAAVLQ 422
Query: 230 L 230
+
Sbjct: 423 I 423
>gi|237785892|ref|YP_002906597.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
44385]
gi|237758804|gb|ACR18054.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
44385]
Length = 823
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 113/181 (62%), Gaps = 4/181 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK++ +E++ L + ++ A++GD++Q+QRERT++ R G+ +LVATDVAARG
Sbjct: 397 IMFARTKQNTEELAEKLRARGFSAAAINGDMAQNQRERTVDQLRDGRLDILVATDVAARG 456
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + +++Y++P+D E++VHR GRTGRAG+ G AIL T +RR +RS+ER
Sbjct: 457 LDVERISHVVNYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPRERRLLRSIERATKSSI 516
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDA--LAAALAQL 230
E + P V++V E+ + ++ + V+ F EE T +AAALA
Sbjct: 517 EEMQLPTVDEVNETRKAKFAQSITESLADPQVDLFRGLINSYAEEHETPLADIAAALATQ 576
Query: 231 S 231
S
Sbjct: 577 S 577
>gi|89099486|ref|ZP_01172362.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
gi|89085872|gb|EAR64997.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
Length = 479
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 119/210 (56%), Gaps = 4/210 (1%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + + +K +L+ L+ + + I+F +TKR DE++ AL +E +HGD
Sbjct: 196 IEQFYVEVQERTKFDVLTRLLNIQSPE-LAIIFGRTKRRVDELAEALNLRGFLAEGIHGD 254
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
+SQ +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 255 LSQAKRMSVLRKFKEGSIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 314
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPE 202
AGKEG A+ T ++ + +ER K + PP + + LE + V + +
Sbjct: 315 AGKEGMAMTFITPREKSYLAVVERTTKSKMGKMVPPTLAEALEGQQKAAVDKISQAISAN 374
Query: 203 SVEFFTPTAQRLIEEK-GTDALAAALAQLS 231
++E + A L+E+ +D +AA L L+
Sbjct: 375 NLENYKEAADELLEQHDASDVVAAVLKLLT 404
>gi|254473978|ref|ZP_05087371.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
gi|211956867|gb|EEA92074.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
Length = 483
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 103/156 (66%), Gaps = 6/156 (3%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 77
EK+ + ++ ++SKR L D+++ + IVFT+TKR AD VS L ++S
Sbjct: 218 EKIDQSVRFL----NSSSKRAALLDILS-EDDIERAIVFTRTKRGADRVSGHLEKAGLSS 272
Query: 78 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
A+HG+ SQ RE++L+GF+ G+ +LVATD+AARG+DI V +++YELPN PE +VHR
Sbjct: 273 AAIHGNKSQRNREKSLDGFKNGRIKILVATDIAARGIDIDGVSHVVNYELPNVPEAYVHR 332
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
GRT RAGK G A+ + ++++ +R +ER +G K
Sbjct: 333 IGRTARAGKSGVAVSLCDATEQPYLRDIERLIGRKI 368
>gi|367024527|ref|XP_003661548.1| hypothetical protein MYCTH_2301066 [Myceliophthora thermophila ATCC
42464]
gi|347008816|gb|AEO56303.1| hypothetical protein MYCTH_2301066 [Myceliophthora thermophila ATCC
42464]
Length = 657
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 99/166 (59%), Gaps = 7/166 (4%)
Query: 1 MLNYFVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQT 60
LN +V S +VG+ E + + I+ KR++L D++ +A GG T++F +T
Sbjct: 393 FLNDYVFLS-VGRVGSTSENITQKIEY----VEDVDKRSVLLDILHTHA-GGLTLIFVET 446
Query: 61 KRDADEVS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 119
KR AD +S + + ++HGD +Q +RER L FR GK +LVAT VAARGLDIPNV
Sbjct: 447 KRMADSLSDFLINQNFPATSIHGDRTQRERERALELFRNGKCPILVATAVAARGLDIPNV 506
Query: 120 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+I+Y+LP D + +VHR GRTGRAG G A F R VR L
Sbjct: 507 THVINYDLPTDVDDYVHRIGRTGRAGNTGIATAFFNRGNRGIVREL 552
>gi|398307568|ref|ZP_10511154.1| ATP-dependent RNA helicase; cold shock [Bacillus vallismortis
DV1-F-3]
Length = 494
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 107/179 (59%), Gaps = 2/179 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLVATDVAARG
Sbjct: 245 IVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARG 304
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++E+ K
Sbjct: 305 LDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKM 364
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 231
+ + P +++ LE + V L + ++ F+ A L+E+ + AA ++S
Sbjct: 365 DRMKEPTLDEALEGQQQVTVERLRTAISENNLNFYMTAAAELLEDHDAVTVVAAAIKMS 423
>gi|422324246|ref|ZP_16405283.1| hypothetical protein HMPREF0737_00393 [Rothia mucilaginosa M508]
gi|353344302|gb|EHB88614.1| hypothetical protein HMPREF0737_00393 [Rothia mucilaginosa M508]
Length = 752
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 134/432 (31%), Positives = 197/432 (45%), Gaps = 81/432 (18%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK++ +EV+ L + A+ A++GDI Q RERT++ R G+ +LVATDVAARG
Sbjct: 329 IVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDILVATDVAARG 388
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + L+++Y++P+D E++VHR GRTGRAG+EG AIL T ++ +R +E+ K
Sbjct: 389 LDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKYMLRQIEKATRQKV 448
Query: 174 EFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA--LAAAL 227
E + P E V E+ A+Q+ T + E + FF + E T A +AAAL
Sbjct: 449 EPMHMPTAEAVNETRKQRFAQQITET---IESEDLSFFRQIIEDYENEHDTTAEDIAAAL 505
Query: 228 AQLSG-------------------FSRPPSSR-----SLINHEQGWVTLQLTRDSAFSRG 263
A ++ FS S R ++++G V +L + SR
Sbjct: 506 AVIAQQGRPFFLDEEEDIARNSRPFSDDDSDRGGRKAKRAHNDEGMVNYKLNVGRS-SR- 563
Query: 264 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 323
++A +++G L++ +IG I I + G DLP + L + +I G I+
Sbjct: 564 -VTAGAIVGALANEGGIKGSQIGSIDIRQHFTIVGLPEDLPRDFFDRLRDTKIA-GEFIN 621
Query: 324 KITKLPALQDDGPSSDNYGRFSSR----------DRFSRGGGSRFSRGGARGGARGGGSM 373
+D+GP GR DR G RG GG GG
Sbjct: 622 ------IRKDNGPKGGGGGRSFGGGRREGGFRDFDRREGGRREGGYRGNREGGRDFGGDR 675
Query: 374 DRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSD----DDWLIGGSRSSRS 429
D + RGGR F G R R D D+ GG R +R
Sbjct: 676 DFK-------------------RGGRDF--GGKRNDRDFGGRDFGGRDNRRDGGYRGNRD 714
Query: 430 SSRD--SRSFGG 439
RD R FGG
Sbjct: 715 GGRDFGGRDFGG 726
>gi|350264711|ref|YP_004876018.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349597598|gb|AEP85386.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 494
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 107/179 (59%), Gaps = 2/179 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLVATDVAARG
Sbjct: 245 IVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARG 304
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++E+ K
Sbjct: 305 LDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKM 364
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 231
+ + P +++ LE + V L + ++ F+ A L+E+ + AA ++S
Sbjct: 365 DRMKEPTLDEALEGQQQVTVERLRTAISENNLNFYMTAAAELLEDHDAVTVVAAAIKMS 423
>gi|428770509|ref|YP_007162299.1| DEAD/DEAH box helicase [Cyanobacterium aponinum PCC 10605]
gi|428684788|gb|AFZ54255.1| DEAD/DEAH box helicase domain protein [Cyanobacterium aponinum PCC
10605]
Length = 491
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 107/181 (59%), Gaps = 8/181 (4%)
Query: 55 IVFTQTKRDADEVSLALTSIIAS-EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TKR A E++ L S + HGD+SQ QRER + +R GK ++VATD+AARG
Sbjct: 247 IIFVRTKRTASELTTKLQEAGQSVDEYHGDLSQSQRERLIQRWRDGKIKLVVATDIAARG 306
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ ++ + +++LP++ ET++HR GRTGRAGKEG AI + S RR +R +ER +
Sbjct: 307 LDVSDLTHVFNFDLPDNTETYIHRIGRTGRAGKEGKAIALVEPSDRRFLRQIERRLNQTI 366
Query: 174 EFVSPP----VVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 229
+ P V +E EQ+ +L G E + F P + L E+ A+AAA Q
Sbjct: 367 RVENVPNRSTVEAKRMEKLTEQIKESLAG---ERLASFLPLVKELHEDYDPTAIAAATLQ 423
Query: 230 L 230
+
Sbjct: 424 I 424
>gi|94501919|ref|ZP_01308429.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
gi|94425972|gb|EAT10970.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
Length = 614
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 114/187 (60%), Gaps = 5/187 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VF +TK+ +EV+ + S + EAL+GD++Q QRER ++ ++G+ +LVATDVAARG
Sbjct: 249 MVFVRTKQATEEVADYMRSHGLRCEALNGDVAQAQRERAVDRLKKGQVDMLVATDVAARG 308
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + +++Y++P D E++VHR GRTGRAG+ G AIL +RR + ++ER K
Sbjct: 309 LDVERISHVVNYDIPYDAESYVHRIGRTGRAGRSGEAILFVRPRERRMLSTIERVTRKKI 368
Query: 174 EFVSPPVVEDVLESSAEQV-VATLNGVHPESVEFFTPTAQRLI-EEKGTDA--LAAALAQ 229
+ + P ++V +Q V L + +E F A ++ E+ D LAAA AQ
Sbjct: 369 QQIELPTAKEVNAKRRDQFKVRALEHIEGRDIEIFKKIASEILAEQPALDPIELAAAFAQ 428
Query: 230 LSGFSRP 236
+S ++P
Sbjct: 429 MSQGNKP 435
>gi|299115952|emb|CBN75957.1| DEAD box helicase DEAD/DEAH box helicase-like protein (Partial)
[Ectocarpus siliculosus]
Length = 708
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 112/209 (53%), Gaps = 13/209 (6%)
Query: 53 KTIVFTQTKRDADEVSL-ALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111
K TK + DE+ S + +EALHG ++Q RE L FR G+ ++VATDVAA
Sbjct: 381 KQTTLWSTKAEVDELCTHPALSRLGAEALHGGLTQAAREACLGRFRSGRTKMIVATDVAA 440
Query: 112 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 171
RGLDIP VD++ HY LPN+ E+FVHRSGRTGRAGK G I++ ++ + R + +LE D
Sbjct: 441 RGLDIPGVDMVFHYRLPNEKESFVHRSGRTGRAGKAGLNIILCSNVEDRQLAALEGDYSF 500
Query: 172 KFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLI-----------EEKGT 220
K S P +E A ++ + V SV + P A L+ ++GT
Sbjct: 501 KSLRRSTPSGASNVEEMAGEIKQKILSVSAASVRMYEPQAADLLMKLGLSVAEQASQEGT 560
Query: 221 DALAA-ALAQLSGFSRPPSSRSLINHEQG 248
+AA + L G ++ SLI + G
Sbjct: 561 GGVAADRIVPLEGVQALSAAMSLIGGDSG 589
>gi|309792203|ref|ZP_07686675.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
DG-6]
gi|308225744|gb|EFO79500.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
DG6]
Length = 523
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 90/131 (68%), Gaps = 1/131 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +T+ +AD + +L SE LHGD+SQ QR+R + FR+G+ +LVATDVAARG
Sbjct: 243 IIFCRTRSEADALGESLQGRGYLSEVLHGDMSQAQRDRVMKRFREGQAELLVATDVAARG 302
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDIP+V +I+Y++PNDPE +VHR GRTGRAG+ G AI + T +RR ++ +ER +
Sbjct: 303 LDIPDVTHVINYDVPNDPEAYVHRIGRTGRAGRTGLAITLITPRERRMLQIIERASRSRI 362
Query: 174 EFVSPPVVEDV 184
+ P + DV
Sbjct: 363 QRQKLPSLADV 373
>gi|410458653|ref|ZP_11312411.1| DEAD/DEAH box helicase [Bacillus azotoformans LMG 9581]
gi|409931248|gb|EKN68234.1| DEAD/DEAH box helicase [Bacillus azotoformans LMG 9581]
Length = 501
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 121/217 (55%), Gaps = 9/217 (4%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL-TSIIAS 77
E I+ Y I K +L+ L+ + + IVF +TKR DE+S AL T A+
Sbjct: 209 EMTVPNIEQYYIEMQEKKKFDVLTRLLDMESPE-LAIVFGRTKRRVDELSEALNTRGYAA 267
Query: 78 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
E +HGD++Q +R L F+ G VLVATDVAARGLDI V + ++++P DPE++VHR
Sbjct: 268 EGIHGDLTQAKRSSVLKKFKAGTIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHR 327
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES----SAEQVV 193
GRTGRAGK G A T + ++++ER E P ++D LE +AE+++
Sbjct: 328 IGRTGRAGKTGLAYTFVTPREIGQLKNIERTTKRSMERKPVPSMDDALEGQKQITAEKIL 387
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQL 230
T+ E+ F+ A+ L++E + + AA +L
Sbjct: 388 YTIQN---ENFSFYKHMAEELLDEHDSVTVVAAAIKL 421
>gi|163755350|ref|ZP_02162470.1| putative RNA helicase dead-box protein [Kordia algicida OT-1]
gi|161324770|gb|EDP96099.1| putative RNA helicase dead-box protein [Kordia algicida OT-1]
Length = 591
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 110/187 (58%), Gaps = 9/187 (4%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
++VF +TKRD V+ L + A+HGD+SQ+QR+ + FR + +LVATDVAAR
Sbjct: 244 SVVFCRTKRDTQNVAEKLIEDGYNAAAIHGDLSQNQRDLVMKSFRTRQIQMLVATDVAAR 303
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+D+ ++ +I+Y+LP++ ET+ HRSGRTGRAGK G ++++ T S+ R ++S+ER + K
Sbjct: 304 GIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKNGVSMVIVTKSEMRKIKSIERKIQKK 363
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVH----PESVEFFTPTAQRLIEEKGTDALAAALA 228
FE P +E Q+ N +H + +E + P + E+ + L +
Sbjct: 364 FEQKPIPT---GIEICQVQLFHLANKIHNTEANDEIEDYLPAIMEIFEDTSKEELIKRMV 420
Query: 229 QLSGFSR 235
+ F+R
Sbjct: 421 SVE-FNR 426
>gi|416350513|ref|ZP_11680893.1| putative ATP-dependent RNA helicase [Clostridium botulinum C str.
Stockholm]
gi|338196239|gb|EGO88444.1| putative ATP-dependent RNA helicase [Clostridium botulinum C str.
Stockholm]
Length = 453
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 151/315 (47%), Gaps = 26/315 (8%)
Query: 30 ISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQ 88
+ +K +LS LI + +++F TK+ DEV L + +E LHGD+ Q Q
Sbjct: 148 LEVKENNKLEVLSRLIDM-RNPKLSVIFCNTKKRVDEVVSQLQARGYFAEGLHGDMKQPQ 206
Query: 89 RERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEG 148
R+R +N FR G +LVATDVAARG+D+ +V+ + +Y+LP D E +VHR GRTGRAG+ G
Sbjct: 207 RDRVMNKFRNGTIEILVATDVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRTGRAGRSG 266
Query: 149 TAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESV--EF 206
A R +R +ER K + P DV E + + G E ++
Sbjct: 267 IAFTFVAGKAIRKLRDIERYTKTKVKRAEIPSASDVEEFKVNAFLEKVKGTIEEGHLGKY 326
Query: 207 FTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQG---------WVTLQLTRD 257
L E+ T +AAAL ++S IN E G + + + R+
Sbjct: 327 IDYIENLLDEDYATIDIAAALLKMSLGEEKKEEILDINEEIGDTGAEPGMVRLFINIGRN 386
Query: 258 SAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 317
+ + AR V+G ++ A IGKI I + ++P+E A+E+L +I
Sbjct: 387 NK-----IQARDVIGAIAGETGIAGKVIGKIDIYD----KFTFVEVPKENAREVL--EIM 435
Query: 318 PGNTI--SKITKLPA 330
NTI KI PA
Sbjct: 436 KNNTIKGKKINIEPA 450
>gi|403217071|emb|CCK71566.1| hypothetical protein KNAG_0H01520 [Kazachstania naganishii CBS
8797]
Length = 621
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 103/166 (62%), Gaps = 7/166 (4%)
Query: 1 MLNYFVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQT 60
LN ++ S +VG+ E + + + LY K++ L DL++ KGG T++F +T
Sbjct: 351 FLNDYIFLSVG-RVGSTSENITQKV-LYV---DDMDKKSALLDLLSS-TKGGLTLIFVET 404
Query: 61 KRDADEVS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 119
KR AD+++ + I + A+HGD +Q +RER L F+ G VLVAT VAARGLDIPNV
Sbjct: 405 KRMADQLTDFLIMQNIRATAIHGDRTQMERERALGAFKSGTADVLVATAVAARGLDIPNV 464
Query: 120 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
L+I+Y+LP D + +VHR GRTGRAG GTAI F + V+ L
Sbjct: 465 TLVINYDLPGDIDDYVHRIGRTGRAGNTGTAISFFNYNNNNIVKGL 510
>gi|392396642|ref|YP_006433243.1| DNA/RNA helicase [Flexibacter litoralis DSM 6794]
gi|390527720|gb|AFM03450.1| DNA/RNA helicase, superfamily II [Flexibacter litoralis DSM 6794]
Length = 617
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 119/208 (57%), Gaps = 13/208 (6%)
Query: 44 LITVYAKGG--KTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGK 100
L+ + A G ++F TK+ DEV+ L A+EALHGD++QHQR +N FR G+
Sbjct: 261 LVRLLAYNGWESMLIFCNTKQRTDEVAETLIQKGYAAEALHGDLAQHQRNLVMNKFRHGR 320
Query: 101 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 160
+LVATDVAARG+D+ NV+ +I+Y++P DPE +VHR GRTGRAG +G +I F S +R
Sbjct: 321 VQILVATDVAARGIDVDNVEAVINYDVPLDPEYYVHRIGRTGRAGNKGVSI-TFISGRRE 379
Query: 161 TVR--SLERDVGCKFEFVSPPVVEDVLESS----AEQVVATLNG-VHPESVEFFTPTAQR 213
R +ER + + P ++VL E + AT+N E +E +T +
Sbjct: 380 VYRLNDIERYSKSRIPQGTIPTQQEVLAKKQLRFMENLKATINDEKKAEELESYTALIEM 439
Query: 214 L-IEEKGTDALAAALAQLSGFSRPPSSR 240
L IE + +AAA+ L S P+ R
Sbjct: 440 LEIEGITSKQVAAAVLSLQ-LSNKPTDR 466
>gi|332296357|ref|YP_004438280.1| DEAD/DEAH box helicase [Thermodesulfobium narugense DSM 14796]
gi|332179460|gb|AEE15149.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
DSM 14796]
Length = 531
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 94/141 (66%), Gaps = 1/141 (0%)
Query: 53 KTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111
KTI+F +TK+ DE+ +L T ++E LHGD++Q QR++ + FR+ VLVATDVAA
Sbjct: 243 KTIIFCRTKKGVDELVASLNTRGYSAEGLHGDLTQAQRDKVMKSFRERNLEVLVATDVAA 302
Query: 112 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 171
RGLDI +V +I++++P DPE++VHR GRTGRAGK G AI T + R +R +E+ +
Sbjct: 303 RGLDISDVSHVINFDIPQDPESYVHRIGRTGRAGKSGIAITFITPREFRQLRLIEKVIRT 362
Query: 172 KFEFVSPPVVEDVLESSAEQV 192
+ P + D+LE +++
Sbjct: 363 TIKRKEVPSISDLLEKQKDEL 383
>gi|154684961|ref|YP_001420122.1| hypothetical protein RBAM_004920 [Bacillus amyloliquefaciens FZB42]
gi|154350812|gb|ABS72891.1| YdbR [Bacillus amyloliquefaciens FZB42]
Length = 511
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 110/187 (58%), Gaps = 4/187 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLVATDVAARG
Sbjct: 262 IVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARG 321
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++E+ K
Sbjct: 322 LDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKM 381
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ + P +++ LE + V L + ++ F+ A L+E+ DA+ A +
Sbjct: 382 DRMKEPTLDEALEGQQQVTVDRLRTAISENNLNFYMTAAAELLEDH--DAVTVVAAAIKM 439
Query: 233 FSRPPSS 239
++ P S
Sbjct: 440 ATKEPDS 446
>gi|387896965|ref|YP_006327261.1| ATP-dependent RNA helicase [Bacillus amyloliquefaciens Y2]
gi|387171075|gb|AFJ60536.1| ATP-dependent RNA helicase [Bacillus amyloliquefaciens Y2]
Length = 517
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 110/187 (58%), Gaps = 4/187 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLVATDVAARG
Sbjct: 268 IVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARG 327
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++E+ K
Sbjct: 328 LDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKM 387
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ + P +++ LE + V L + ++ F+ A L+E+ DA+ A +
Sbjct: 388 DRMKEPTLDEALEGQQQVTVDRLRTAISENNLNFYMTAAAELLEDH--DAVTVVAAAIKM 445
Query: 233 FSRPPSS 239
++ P S
Sbjct: 446 ATKEPDS 452
>gi|340751823|ref|ZP_08688633.1| ATP-dependent RNA helicase [Fusobacterium mortiferum ATCC 9817]
gi|229420786|gb|EEO35833.1| ATP-dependent RNA helicase [Fusobacterium mortiferum ATCC 9817]
Length = 545
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 109/176 (61%), Gaps = 3/176 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK DA+++ L +E LHGDISQ+ RE TL F+ K VLVATDVAARG
Sbjct: 247 IVFCRTKNDANDLVGKLNDRGYDAEGLHGDISQNYREVTLKRFKAKKINVLVATDVAARG 306
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ ++ +I+Y +P + E++VHR GRTGRAGKEGTAI T + R + ++R V +
Sbjct: 307 IDVNDLSHVINYSIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQIQRIVKTEI 366
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIE-EKGTDALAAAL 227
P ++DV+++ +++ LN + E + + F A+ L+ E+ D +AA L
Sbjct: 367 RKERVPEIKDVIQAKKFRLMEELNNILAEGNYDNFKDFAKELLNGEQALDLVAALL 422
>gi|419860593|ref|ZP_14383234.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|387982987|gb|EIK56486.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 667
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 93/134 (69%), Gaps = 1/134 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 310 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 369
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER K
Sbjct: 370 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAKL 429
Query: 174 EFVSPPVVEDVLES 187
+ P V++V ES
Sbjct: 430 IEMDLPTVDEVNES 443
>gi|376290134|ref|YP_005162381.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae C7 (beta)]
gi|372103530|gb|AEX67127.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae C7 (beta)]
Length = 682
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 93/134 (69%), Gaps = 1/134 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 310 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 369
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER K
Sbjct: 370 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAKL 429
Query: 174 EFVSPPVVEDVLES 187
+ P V++V ES
Sbjct: 430 IEMDLPTVDEVNES 443
>gi|379715095|ref|YP_005303432.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 316]
gi|387140417|ref|YP_005696395.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 1/06-A]
gi|355392208|gb|AER68873.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 1/06-A]
gi|377653801|gb|AFB72150.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 316]
Length = 660
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 95/138 (68%), Gaps = 1/138 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 309 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 368
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER +
Sbjct: 369 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAEL 428
Query: 174 EFVSPPVVEDVLESSAEQ 191
+ P V++V ES E+
Sbjct: 429 IEMDLPTVDEVNESRKEK 446
>gi|376287519|ref|YP_005160085.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae BH8]
gi|371584853|gb|AEX48518.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae BH8]
Length = 680
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 93/134 (69%), Gaps = 1/134 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 310 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 369
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER K
Sbjct: 370 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAKL 429
Query: 174 EFVSPPVVEDVLES 187
+ P V++V ES
Sbjct: 430 IEMDLPTVDEVNES 443
>gi|376254085|ref|YP_005142544.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae PW8]
gi|372117169|gb|AEX69639.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae PW8]
Length = 705
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 93/134 (69%), Gaps = 1/134 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 310 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 369
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER K
Sbjct: 370 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAKL 429
Query: 174 EFVSPPVVEDVLES 187
+ P V++V ES
Sbjct: 430 IEMDLPTVDEVNES 443
>gi|376248300|ref|YP_005140244.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC04]
gi|376251090|ref|YP_005137971.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC03]
gi|376256907|ref|YP_005144798.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae VA01]
gi|372112594|gb|AEX78653.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC03]
gi|372114868|gb|AEX80926.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC04]
gi|372119424|gb|AEX83158.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae VA01]
Length = 682
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 93/134 (69%), Gaps = 1/134 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 310 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 369
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER K
Sbjct: 370 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAKL 429
Query: 174 EFVSPPVVEDVLES 187
+ P V++V ES
Sbjct: 430 IEMDLPTVDEVNES 443
>gi|375292864|ref|YP_005127403.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae INCA 402]
gi|371582535|gb|AEX46201.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae INCA 402]
Length = 676
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 93/134 (69%), Gaps = 1/134 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 310 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 369
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER K
Sbjct: 370 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAKL 429
Query: 174 EFVSPPVVEDVLES 187
+ P V++V ES
Sbjct: 430 IEMDLPTVDEVNES 443
>gi|38233613|ref|NP_939380.1| DEAD/DEAH box helicase [Corynebacterium diphtheriae NCTC 13129]
gi|376242613|ref|YP_005133465.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae CDCE 8392]
gi|38199873|emb|CAE49539.1| DEAD-box helicase [Corynebacterium diphtheriae]
gi|372105855|gb|AEX71917.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae CDCE 8392]
Length = 680
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 93/134 (69%), Gaps = 1/134 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 310 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 369
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER K
Sbjct: 370 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAKL 429
Query: 174 EFVSPPVVEDVLES 187
+ P V++V ES
Sbjct: 430 IEMDLPTVDEVNES 443
>gi|376293035|ref|YP_005164709.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC02]
gi|372110358|gb|AEX76418.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC02]
Length = 682
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 93/134 (69%), Gaps = 1/134 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 310 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 369
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER K
Sbjct: 370 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAKL 429
Query: 174 EFVSPPVVEDVLES 187
+ P V++V ES
Sbjct: 430 IEMDLPTVDEVNES 443
>gi|67528815|ref|XP_662070.1| hypothetical protein AN4466.2 [Aspergillus nidulans FGSC A4]
gi|40741041|gb|EAA60231.1| hypothetical protein AN4466.2 [Aspergillus nidulans FGSC A4]
Length = 1526
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 95/160 (59%), Gaps = 5/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + ++ KR++L D++ + G T++F +TKR AD
Sbjct: 406 VFLSVGRVGSTSENITQKVEY----VEDHDKRSVLLDILHTHGTTGLTLIFVETKRMADA 461
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S + + A+HGD +Q +RER L FR G++ +LVAT VAARGLDIPNV +I+Y
Sbjct: 462 LSEFLINQRFPATAIHGDRTQRERERALEMFRSGRYPILVATAVAARGLDIPNVTHVINY 521
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP D + +VHR GRTGRAG G A F R VR L
Sbjct: 522 DLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDL 561
>gi|407695316|ref|YP_006820104.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax dieselolei
B5]
gi|407252654|gb|AFT69761.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax dieselolei
B5]
Length = 559
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 5/157 (3%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
IVF +TK+ E++ L + +EAL+GDI Q QRE+T+ R+G+F +L+ATDV AR
Sbjct: 248 VIVFARTKQSTLELAEQLQRRGLRAEALNGDIPQAQREKTVARLREGRFDLLIATDVVAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P + +I+Y++P D E +VHR GRTGRAG+ G AIL + +R +R++ER G
Sbjct: 308 GLDVPRISHVINYDMPADTEAYVHRIGRTGRAGRNGEAILFVSHRERGMLRAIERATGQS 367
Query: 173 FEFVSPPVVEDV----LESSAEQVVATLNGVHPESVE 205
E + P V+ + L EQ+VA L H E E
Sbjct: 368 LESMDLPSVDALNSKRLAKLQEQLVAGLESKHREEAE 404
>gi|385263594|ref|ZP_10041681.1| DEAD/DEAH box helicase [Bacillus sp. 5B6]
gi|385148090|gb|EIF12027.1| DEAD/DEAH box helicase [Bacillus sp. 5B6]
Length = 517
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 110/187 (58%), Gaps = 4/187 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLVATDVAARG
Sbjct: 268 IVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARG 327
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++E+ K
Sbjct: 328 LDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKM 387
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ + P +++ LE + V L + ++ F+ A L+E+ DA+ A +
Sbjct: 388 DRMKEPTLDEALEGQQQVTVDRLRTAISENNLNFYMTAAAELLEDH--DAVTVVAAAIKM 445
Query: 233 FSRPPSS 239
++ P S
Sbjct: 446 ATKEPDS 452
>gi|384264053|ref|YP_005419760.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|452854495|ref|YP_007496178.1| ATP-dependent RNA helicase; cold shock [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|380497406|emb|CCG48444.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|452078755|emb|CCP20506.1| ATP-dependent RNA helicase; cold shock [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 494
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 110/187 (58%), Gaps = 4/187 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLVATDVAARG
Sbjct: 245 IVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARG 304
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++E+ K
Sbjct: 305 LDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKM 364
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ + P +++ LE + V L + ++ F+ A L+E+ DA+ A +
Sbjct: 365 DRMKEPTLDEALEGQQQVTVDRLRTAISENNLNFYMTAAAELLEDH--DAVTVVAAAIKM 422
Query: 233 FSRPPSS 239
++ P S
Sbjct: 423 ATKEPDS 429
>gi|376284519|ref|YP_005157729.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae 31A]
gi|371578034|gb|AEX41702.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae 31A]
Length = 680
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 93/134 (69%), Gaps = 1/134 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 310 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 369
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER K
Sbjct: 370 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAKL 429
Query: 174 EFVSPPVVEDVLES 187
+ P V++V ES
Sbjct: 430 IEMDLPTVDEVNES 443
>gi|350564547|ref|ZP_08933364.1| DEAD/DEAH box helicase domain protein [Thioalkalimicrobium
aerophilum AL3]
gi|349777566|gb|EGZ31929.1| DEAD/DEAH box helicase domain protein [Thioalkalimicrobium
aerophilum AL3]
Length = 609
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 111/180 (61%), Gaps = 4/180 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK E++ L + A+ AL+GDI+Q+ RER ++ ++GK +L+ATDV ARG
Sbjct: 251 IIFVRTKTATIELAEKLEARGYAAAALNGDIAQNHRERIVDQLKKGKIDILIATDVVARG 310
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + +++Y++P D E++VHR GRTGRAG+ G AIL +RR ++ +ER K
Sbjct: 311 LDVERITHVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFVAPRERRLLQQIERATNKKI 370
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDAL--AAALAQL 230
+ ++ P +D+ + E+ A + + + E +EF+ + L + AL AAALA+L
Sbjct: 371 DMLTLPSTQDINDQRVEKFKARITDALEQEGLEFYQQMIEDLQQASNVPALEIAAALAKL 430
>gi|171693513|ref|XP_001911681.1| hypothetical protein [Podospora anserina S mat+]
gi|170946705|emb|CAP73508.1| unnamed protein product [Podospora anserina S mat+]
Length = 694
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 99/166 (59%), Gaps = 7/166 (4%)
Query: 1 MLNYFVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQT 60
LN +V S +VG+ E + + ++ KR++L D++ +A GG T++F +T
Sbjct: 410 FLNDYVFLS-VGRVGSTSENITQKVEY----VEDVDKRSVLLDILHTHA-GGLTLIFVET 463
Query: 61 KRDADEVS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 119
KR AD +S + + ++HGD +Q +RER L FR GK +LVAT VAARGLDIPNV
Sbjct: 464 KRMADSLSDFLINQNFPATSIHGDRTQRERERALELFRNGKCPILVATAVAARGLDIPNV 523
Query: 120 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+I+Y+LP D + +VHR GRTGRAG G A F R VR L
Sbjct: 524 THVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVREL 569
>gi|389850156|ref|YP_006352391.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 258]
gi|388247462|gb|AFK16453.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 258]
Length = 660
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 95/138 (68%), Gaps = 1/138 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 309 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 368
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER +
Sbjct: 369 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAEL 428
Query: 174 EFVSPPVVEDVLESSAEQ 191
+ P V++V ES E+
Sbjct: 429 IEMDLPTVDEVNESRKEK 446
>gi|429503967|ref|YP_007185151.1| hypothetical protein B938_02225 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|429485557|gb|AFZ89481.1| hypothetical protein B938_02225 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 494
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 110/187 (58%), Gaps = 4/187 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLVATDVAARG
Sbjct: 245 IVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARG 304
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++E+ K
Sbjct: 305 LDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKM 364
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ + P +++ LE + V L + ++ F+ A L+E+ DA+ A +
Sbjct: 365 DRMKEPTLDEALEGQQQVTVDRLRTAISENNLNFYMTAAAELLEDH--DAVTVVAAAIKM 422
Query: 233 FSRPPSS 239
++ P S
Sbjct: 423 ATKEPDS 429
>gi|403170819|ref|XP_003330106.2| hypothetical protein PGTG_11016 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168903|gb|EFP85687.2| hypothetical protein PGTG_11016 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 640
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 98/160 (61%), Gaps = 5/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + I+ KR++L D+++ GG T+VF +TKR AD
Sbjct: 378 IFLSVGRVGSTSENITQKIEY----VEDADKRSVLLDVLSSMPTGGLTLVFVETKRMADM 433
Query: 67 V-SLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+ + + S A+ ++HGD SQ +RER L FR + V+VAT VAARGLDIPNV +++Y
Sbjct: 434 LENFLIQSNFAATSIHGDRSQRERERALETFRSSRTPVMVATAVAARGLDIPNVTHVVNY 493
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LPND + +VHR GRTGRAG G + F + + VR L
Sbjct: 494 DLPNDIDDYVHRIGRTGRAGNTGISTAFFNRNNKNIVREL 533
>gi|304403873|ref|ZP_07385535.1| DEAD/DEAH box helicase domain protein [Paenibacillus
curdlanolyticus YK9]
gi|304346851|gb|EFM12683.1| DEAD/DEAH box helicase domain protein [Paenibacillus
curdlanolyticus YK9]
Length = 500
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 103/166 (62%), Gaps = 3/166 (1%)
Query: 12 TQVGNQDEKL-AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLA 70
T V EK+ + I+ AI TT K L +LI Y + +VF +TK A +++ A
Sbjct: 204 TDVNITPEKVTVDKIRQVAIETTDRRKEDTLVELIGKY-QPYLAVVFCRTKVRAKKLNEA 262
Query: 71 LTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN 129
L I+S+ LHGD+SQ +RE+ + FRQ + VL+ATDVAARGLD+ V + +Y++P
Sbjct: 263 LQERGISSDELHGDLSQAKREQVMKRFRQARLQVLIATDVAARGLDVEGVSHVFNYDVPQ 322
Query: 130 DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 175
DPET+VHR GRTGRAG EG A+ + +S V ++++ +G K E
Sbjct: 323 DPETYVHRIGRTGRAGNEGMAVTLVSSHDIGAVANIQKTLGVKIEL 368
>gi|392400358|ref|YP_006436958.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis Cp162]
gi|390531436|gb|AFM07165.1| DEAD-box helicase [Corynebacterium pseudotuberculosis Cp162]
Length = 660
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 95/138 (68%), Gaps = 1/138 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 309 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 368
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER +
Sbjct: 369 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAEL 428
Query: 174 EFVSPPVVEDVLESSAEQ 191
+ P V++V ES E+
Sbjct: 429 IEMDLPTVDEVNESRKEK 446
>gi|386740147|ref|YP_006213327.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 31]
gi|384476841|gb|AFH90637.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 31]
Length = 660
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 95/138 (68%), Gaps = 1/138 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 309 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 368
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER +
Sbjct: 369 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAEL 428
Query: 174 EFVSPPVVEDVLESSAEQ 191
+ P V++V ES E+
Sbjct: 429 IEMDLPTVDEVNESRKEK 446
>gi|383313989|ref|YP_005374844.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis P54B96]
gi|380869490|gb|AFF21964.1| DEAD-box helicase [Corynebacterium pseudotuberculosis P54B96]
Length = 638
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 95/138 (68%), Gaps = 1/138 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 309 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 368
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER +
Sbjct: 369 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAEL 428
Query: 174 EFVSPPVVEDVLESSAEQ 191
+ P V++V ES E+
Sbjct: 429 IEMDLPTVDEVNESRKEK 446
>gi|387136343|ref|YP_005692323.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 42/02-A]
gi|348606788|gb|AEP70061.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 42/02-A]
Length = 659
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 95/138 (68%), Gaps = 1/138 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 309 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 368
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER +
Sbjct: 369 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAEL 428
Query: 174 EFVSPPVVEDVLESSAEQ 191
+ P V++V ES E+
Sbjct: 429 IEMDLPTVDEVNESRKEK 446
>gi|384506502|ref|YP_005683171.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis C231]
gi|302205951|gb|ADL10293.1| DEAD-box helicase [Corynebacterium pseudotuberculosis C231]
Length = 650
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 95/138 (68%), Gaps = 1/138 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 309 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 368
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER +
Sbjct: 369 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAEL 428
Query: 174 EFVSPPVVEDVLESSAEQ 191
+ P V++V ES E+
Sbjct: 429 IEMDLPTVDEVNESRKEK 446
>gi|300858229|ref|YP_003783212.1| hypothetical protein cpfrc_00811 [Corynebacterium
pseudotuberculosis FRC41]
gi|375288396|ref|YP_005122937.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 3/99-5]
gi|384504410|ref|YP_005681080.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 1002]
gi|384508590|ref|YP_005685258.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis I19]
gi|384510681|ref|YP_005690259.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis PAT10]
gi|300685683|gb|ADK28605.1| hypothetical protein cpfrc_00811 [Corynebacterium
pseudotuberculosis FRC41]
gi|302330505|gb|ADL20699.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 1002]
gi|308276186|gb|ADO26085.1| DEAD-box helicase [Corynebacterium pseudotuberculosis I19]
gi|341824620|gb|AEK92141.1| DEAD-box helicase [Corynebacterium pseudotuberculosis PAT10]
gi|371575685|gb|AEX39288.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 3/99-5]
Length = 660
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 95/138 (68%), Gaps = 1/138 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 309 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 368
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER +
Sbjct: 369 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAEL 428
Query: 174 EFVSPPVVEDVLESSAEQ 191
+ P V++V ES E+
Sbjct: 429 IEMDLPTVDEVNESRKEK 446
>gi|353558872|sp|C8V8H4.1|DED1_EMENI RecName: Full=ATP-dependent RNA helicase ded1
gi|259482717|tpe|CBF77461.1| TPA: ATP-dependent RNA helicase ded1 (EC 3.6.1.-)
[Source:UniProtKB/Swiss-Prot;Acc:P0C2M6] [Aspergillus
nidulans FGSC A4]
Length = 668
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 95/160 (59%), Gaps = 5/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + ++ KR++L D++ + G T++F +TKR AD
Sbjct: 406 VFLSVGRVGSTSENITQKVEY----VEDHDKRSVLLDILHTHGTTGLTLIFVETKRMADA 461
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S + + A+HGD +Q +RER L FR G++ +LVAT VAARGLDIPNV +I+Y
Sbjct: 462 LSEFLINQRFPATAIHGDRTQRERERALEMFRSGRYPILVATAVAARGLDIPNVTHVINY 521
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP D + +VHR GRTGRAG G A F R VR L
Sbjct: 522 DLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDL 561
>gi|451943907|ref|YP_007464543.1| hypothetical protein A605_05875 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
gi|451903294|gb|AGF72181.1| hypothetical protein A605_05875 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
Length = 697
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 94/134 (70%), Gaps = 1/134 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK + +E++ L + ++ A++GDI+Q+QRERT++ + G+ +LVATDVAARG
Sbjct: 326 IVFVRTKHETEEIAEKLRARGFSAAAINGDIAQNQRERTVDQLKNGRLDILVATDVAARG 385
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + +++Y++P+D E++VHR GRTGRAG+ G AIL T +RR + S+ER
Sbjct: 386 LDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLNSIERATNAPL 445
Query: 174 EFVSPPVVEDVLES 187
+ + P VEDV E+
Sbjct: 446 DEMELPSVEDVNEA 459
>gi|345873134|ref|ZP_08825053.1| DEAD/DEAH box helicase domain protein [Thiorhodococcus drewsii AZ1]
gi|343917536|gb|EGV28334.1| DEAD/DEAH box helicase domain protein [Thiorhodococcus drewsii AZ1]
Length = 635
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 115/417 (27%), Positives = 197/417 (47%), Gaps = 55/417 (13%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I + T K IL+ ++ + G ++F +TK E+S L + A+E L+GD
Sbjct: 222 IDQHHCIVTRFHKLDILTRILELEPFDG-MLIFVRTKNATTELSDKLKAHGFAAEPLNGD 280
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q RERT+ +QG+ +LVATDVAARGLD+ + +++Y++P DP +VHR GRTGR
Sbjct: 281 MNQEMRERTVERLKQGQLDILVATDVAARGLDVDRISHVVNYDIPTDPAAYVHRIGRTGR 340
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPE 202
AG+ G AIL+ +R ++++ER + + PP E + ES ++ +A + + +
Sbjct: 341 AGRSGRAILLVEPRERGLLKAIERTIRRSVPPMDPPSAEALSESRIDRFIADVRKTMSDQ 400
Query: 203 SVEFFTPTAQRLIEEKGTDAL--AAALAQLSGFSRP---------PSSRSLI-------- 243
++FF R+ +E+ + + AA+LA L RP P R
Sbjct: 401 DLDFFYRLLSRIGQEQEIEMIDVAASLAYLYQRERPLDVKEDLPRPQRRDWSDERSRRGE 460
Query: 244 --NH---------EQGWV-----TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGK 287
NH E+G L R + + R ++G +++ IG+
Sbjct: 461 GRNHSREGRPPRSERGPARRDNENLVSYRIEVGHQHGATPREIVGAIANESGLEGRFIGR 520
Query: 288 IHIIADDRVQGAVFDLPEEIAKELLN--KQIPPGNTISKITKLPALQDDGPSSDNYGRFS 345
I+I D ++ DLP+ + +E+ + K++ +I+ A +D P+ ++
Sbjct: 521 INIQNDH----SIVDLPDGMPREVFSHLKRVFVCGQALRISAAGATNEDSPARRSW---- 572
Query: 346 SRDRFSRGGGSRFSRGGARGGA---RGGGSMDRR--GFRSSRSWGSDDEDGFSSSRG 397
+ G SRF G +G R G++ R+ G +S+GS D GF G
Sbjct: 573 --EPRQDSGASRFKAGPGQGKPKTFRQSGNVRRQAEGAGPRKSFGSKDSKGFRGDHG 627
>gi|385807275|ref|YP_005843672.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 267]
gi|383804668|gb|AFH51747.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 267]
Length = 662
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 95/138 (68%), Gaps = 1/138 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 309 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 368
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER +
Sbjct: 369 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAEL 428
Query: 174 EFVSPPVVEDVLESSAEQ 191
+ P V++V ES E+
Sbjct: 429 IEMDLPTVDEVNESRKEK 446
>gi|375140808|ref|YP_005001457.1| DNA/RNA helicase [Mycobacterium rhodesiae NBB3]
gi|359821429|gb|AEV74242.1| DNA/RNA helicase, superfamily II [Mycobacterium rhodesiae NBB3]
Length = 562
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 103/164 (62%), Gaps = 2/164 (1%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 80
AE I I + K L+ L+ V +G IVF +TK+ +EV+ L + ++ A+
Sbjct: 223 AENITQRYIQVSYPRKMDALTRLLEV-EQGDAMIVFVRTKQATEEVAEKLRARGFSAAAI 281
Query: 81 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 140
+GDI Q RERT+N + G +LVATDVAARGLD+ + ++++++P+DPE++VHR GR
Sbjct: 282 NGDIPQAVRERTINSLKDGSLDILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGR 341
Query: 141 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 184
TGRAG+ GTA+L T +R ++S+ER K + P V+DV
Sbjct: 342 TGRAGRSGTALLFVTPRERHLLKSIERVTRQKLVEIELPSVDDV 385
>gi|85373802|ref|YP_457864.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
gi|84786885|gb|ABC63067.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
Length = 492
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 104/180 (57%), Gaps = 10/180 (5%)
Query: 22 AEGIKLYAISTTATSKRTILSDLI----TVYAKGGKTIVFTQTKRDADEVSLALTSI-IA 76
AE I Y K+ ++ ++ V K + +VFT+TK AD V L I
Sbjct: 219 AERIDQYLFMVQQDEKQALIEMILKGRHAVPGKQERILVFTRTKHGADRVVKKLRQAGIE 278
Query: 77 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 136
S A+HG+ SQ QR+R L+ F++ K +L+ATDVAARG+DIP V +I+YELPN PE +VH
Sbjct: 279 SNAIHGNKSQPQRQRALDEFKRAKTPILIATDVAARGIDIPGVSHVINYELPNVPEQYVH 338
Query: 137 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP-----VVEDVLESSAEQ 191
R GRT RAGK+G AI +R ++ ++++ +F+ + P VVE V + EQ
Sbjct: 339 RIGRTARAGKDGVAIAFCAEDERAYLKDIQKNTDAEFDRLPLPENFRAVVEGVGPTKREQ 398
>gi|427440715|ref|ZP_18924987.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus lolii
NGRI 0510Q]
gi|425787422|dbj|GAC45775.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus lolii
NGRI 0510Q]
Length = 511
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 119/213 (55%), Gaps = 7/213 (3%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASE 78
E A+ + Y I + K +L+ +I V + +VF +TKR DEV+ L + +
Sbjct: 208 ELTADLVDQYYIRSKEFEKFDMLTRIIDVQSPK-LAVVFGRTKRRVDEVAKGLVARGYNA 266
Query: 79 A-LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
A +HGD++Q +R L+ FR G+ +LVATDVAARGLDI V + +Y++P DPE++VHR
Sbjct: 267 AGIHGDLTQQRRMNILHQFRDGQLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHR 326
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL---ESSAEQVVA 194
GRTGRAG GT++ T+ + +R +ER + + PP E+ + AEQ V
Sbjct: 327 IGRTGRAGAHGTSVTFVTNWEMDYLRDVERLTKKRLLPLKPPTEEEAFIGRAAMAEQNVQ 386
Query: 195 TLNGVHPESVEFFTPTAQRLIEEKGTDALAAAL 227
L V V+ F A RL+E+ L AAL
Sbjct: 387 EL--VKKTDVDKFGEQADRLLEQYDARTLVAAL 417
>gi|403381239|ref|ZP_10923296.1| DEAD/DEAH box helicase [Paenibacillus sp. JC66]
Length = 522
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/187 (41%), Positives = 113/187 (60%), Gaps = 9/187 (4%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TKR DE+S AL ++E LHGD+SQ+QR+ + FR G VLVATDVAARG
Sbjct: 244 IIFGRTKRRVDELSEALQKRGYSAEGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAARG 303
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ V +++++LP DPE++VHR GRTGRAGKEGTA T + + +ER +
Sbjct: 304 LDVSGVSHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWTFVTPREIDHLHFIERVTRHRI 363
Query: 174 EFVSPPVVEDVLE----SSAEQVVATLNGVHPESVEFFTPTAQRLIEE-KGTDALAAALA 228
P + + +E +AE+++ +N E + F A +L+E+ + LAAA+
Sbjct: 364 TRKPLPSLAEAIEGKQRVTAERLLEVINN---EGAQPFKGVAIQLLEQYDSVNLLAAAIK 420
Query: 229 QLSGFSR 235
L+G SR
Sbjct: 421 LLTGESR 427
>gi|387138413|ref|YP_005694392.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis CIP
52.97]
gi|349734891|gb|AEQ06369.1| DEAD-box helicase [Corynebacterium pseudotuberculosis CIP 52.97]
Length = 829
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 95/138 (68%), Gaps = 1/138 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 309 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 368
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER +
Sbjct: 369 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAEL 428
Query: 174 EFVSPPVVEDVLESSAEQ 191
+ P V++V ES E+
Sbjct: 429 IEMDLPTVDEVNESRKEK 446
>gi|373488719|ref|ZP_09579383.1| DEAD/DEAH box helicase domain protein [Holophaga foetida DSM 6591]
gi|372005664|gb|EHP06300.1| DEAD/DEAH box helicase domain protein [Holophaga foetida DSM 6591]
Length = 515
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 105/178 (58%), Gaps = 4/178 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VFT+TK +EV+ L ++++ LHGD++Q R R LN F+ GK +LVATDVAARG
Sbjct: 244 LVFTKTKAQTEEVAQMLREAGLSADHLHGDLAQAARNRILNNFKTGKLHILVATDVAARG 303
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI + L++H +P E++VHRSGRTGRAG +GT++ + + R + + R VG +
Sbjct: 304 LDIEGLPLVVHLGIPTQVESYVHRSGRTGRAGAKGTSLALVGQKESRILMAWGRRVGLQL 363
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 231
+ P E++ E+ ++ L + ES A+RL+E L AAL L+
Sbjct: 364 AWRPVPTQEEIREAKETRLALRLKEIKAESHREL---AKRLLESTDPVELVAALVSLT 418
>gi|150390823|ref|YP_001320872.1| DEAD/DEAH box helicase [Alkaliphilus metalliredigens QYMF]
gi|149950685|gb|ABR49213.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
QYMF]
Length = 529
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 111/178 (62%), Gaps = 2/178 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TKR DE++ L + ++ A+HGD+ Q QR+R + FR +LVATDVAARG
Sbjct: 247 IIFCRTKRSVDELTEKLQNRGYSAAAIHGDLKQTQRDRVMKKFRNRTIDLLVATDVAARG 306
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ +V+++++Y++P D E +VHR GRTGRAGKEG A + T Q RT+++LE + K
Sbjct: 307 IDVNDVEMVMNYDIPEDFEYYVHRIGRTGRAGKEGVAYTLATGKQMRTLKALESYIKGKI 366
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALAAALAQL 230
P V DV+E + + ++ V + + +T ++L ++ + +AAAL ++
Sbjct: 367 VRRKIPTVNDVVEKQKDSIADQIHAVIEKGGLTEYTNFVEKLSDDHNSMDIAAALFKM 424
>gi|116206328|ref|XP_001228973.1| hypothetical protein CHGG_02457 [Chaetomium globosum CBS 148.51]
gi|121789113|sp|Q2HBE7.1|DED1_CHAGB RecName: Full=ATP-dependent RNA helicase DED1
gi|88183054|gb|EAQ90522.1| hypothetical protein CHGG_02457 [Chaetomium globosum CBS 148.51]
Length = 688
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 99/166 (59%), Gaps = 7/166 (4%)
Query: 1 MLNYFVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQT 60
LN +V S +VG+ E + + ++ KR++L D++ +A GG T++F +T
Sbjct: 412 FLNDYVFLS-VGRVGSTSENITQKVEY----VEDVDKRSVLLDILHTHA-GGLTLIFVET 465
Query: 61 KRDADEVS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 119
KR AD +S + + ++HGD +Q +RER L FR GK +LVAT VAARGLDIPNV
Sbjct: 466 KRMADSLSDFLINQNFPATSIHGDRTQRERERALELFRNGKCPILVATAVAARGLDIPNV 525
Query: 120 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+I+Y+LP D + +VHR GRTGRAG G A F R VR L
Sbjct: 526 THVINYDLPTDVDDYVHRIGRTGRAGNTGIATAFFNRGNRGIVREL 571
>gi|358065981|ref|ZP_09152515.1| hypothetical protein HMPREF9473_04578 [Clostridium hathewayi
WAL-18680]
gi|356695844|gb|EHI57469.1| hypothetical protein HMPREF9473_04578 [Clostridium hathewayi
WAL-18680]
Length = 563
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 117/212 (55%), Gaps = 13/212 (6%)
Query: 28 YAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQ 86
Y +K ++ L+ +YA ++ F TKR DE+ L +E LHGD+ Q
Sbjct: 221 YYYEVKPKTKLEVMCRLLDLYAPK-LSVAFCNTKRQVDELVQELQGRGYFAEGLHGDLKQ 279
Query: 87 HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 146
QR+R +N FR GK +LVATDVAARG+D+ +V+ + +Y++P D E +VHR GRTGRAG+
Sbjct: 280 IQRDRVMNSFRNGKTEILVATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGR 339
Query: 147 EGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV--VEDV----LESSAEQVVATLNGVH 200
EG A + +R ++R CK + V P+ + D+ ++ EQV +N
Sbjct: 340 EGIAFSFVVGKEVYKLRDIQR--YCKTKIVPQPIPSLNDITAIKVDKILEQVADIIN--D 395
Query: 201 PESVEFFTPTAQRLIEEKGTDA-LAAALAQLS 231
+ E ++L+EE T LAAAL ++S
Sbjct: 396 NDLSEMVNLIEKKLLEEDYTSMDLAAALLKMS 427
>gi|403669622|ref|ZP_10934813.1| ATP-dependent RNA helicase exp9 [Kurthia sp. JC8E]
Length = 518
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 120/217 (55%), Gaps = 6/217 (2%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI--IA 76
E + I Y + + K ILS L+ V K IVF +TKR DE+S AL SI
Sbjct: 209 ELTVDNIDQYFVKSQEREKFDILSRLLNV-QKPELAIVFGRTKRRVDELSHAL-SIRGYV 266
Query: 77 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 136
+E +HGD+SQ +R L F++ K VLVATDVAARGLDI V + ++++P DPE++VH
Sbjct: 267 AEGIHGDLSQAKRLSVLRQFKENKIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVH 326
Query: 137 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 196
R GRTGRAGK G A+ T + +R +E + + PP ++ L E V L
Sbjct: 327 RIGRTGRAGKSGVAVTFVTPREMNYLRIVEETTKKRMTPLQPPTADEALVGQQEVAVQQL 386
Query: 197 NGVHPES-VEFFTPTAQRLIEE-KGTDALAAALAQLS 231
+ ++ + + A+ L+++ D +AAAL L+
Sbjct: 387 KAIIEKNRLSNYRAMAEELLKDGDAVDFVAAALKSLT 423
>gi|304385542|ref|ZP_07367886.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus
acidilactici DSM 20284]
gi|418069818|ref|ZP_12707095.1| superfamily II DNA/RNA helicase [Pediococcus acidilactici MA18/5M]
gi|304328046|gb|EFL95268.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus
acidilactici DSM 20284]
gi|357536349|gb|EHJ20380.1| superfamily II DNA/RNA helicase [Pediococcus acidilactici MA18/5M]
Length = 511
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 119/213 (55%), Gaps = 7/213 (3%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASE 78
E A+ + Y I + K +L+ +I V + +VF +TKR DEV+ L + +
Sbjct: 208 ELTADLVDQYYIRSKEFEKFDMLTRIIDVQSPK-LAVVFGRTKRRVDEVAKGLVARGYNA 266
Query: 79 A-LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
A +HGD++Q +R L+ FR G+ +LVATDVAARGLDI V + +Y++P DPE++VHR
Sbjct: 267 AGIHGDLTQQRRMNILHQFRDGQLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHR 326
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL---ESSAEQVVA 194
GRTGRAG GT++ T+ + +R +ER + + PP E+ + AEQ V
Sbjct: 327 IGRTGRAGAHGTSVTFVTNWEMDYLRDVERLTKKRLLPLKPPTEEEAFIGRAAMAEQNVQ 386
Query: 195 TLNGVHPESVEFFTPTAQRLIEEKGTDALAAAL 227
L V V+ F A RL+E+ L AAL
Sbjct: 387 EL--VKKTDVDKFGEQADRLLEQYDARTLVAAL 417
>gi|254517068|ref|ZP_05129126.1| cold-shock deAd-box protein a [gamma proteobacterium NOR5-3]
gi|219674573|gb|EED30941.1| cold-shock deAd-box protein a [gamma proteobacterium NOR5-3]
Length = 609
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 96/145 (66%), Gaps = 1/145 (0%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
I+F +T+ E++ L++ A+ AL+GDI+Q+QRE+T+ ++G +L+ATDVAAR
Sbjct: 250 VIIFVRTRIATQELADKLSARGYATAALNGDIAQNQREKTVENLKKGGLDILIATDVAAR 309
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+ + +I+Y++PNDPE +VHR GRTGRAG+ G AIL + +RR +R++ER G K
Sbjct: 310 GLDVERISHVINYDIPNDPEAYVHRIGRTGRAGRTGEAILFAANRERRLLRTIERVTGQK 369
Query: 173 FEFVSPPVVEDVLESSAEQVVATLN 197
E + P E V + A + A +
Sbjct: 370 IESMELPTSEQVSDKRASRFKARIT 394
>gi|295397627|ref|ZP_06807702.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
gi|294974090|gb|EFG49842.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
Length = 509
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 105/188 (55%), Gaps = 4/188 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +TKR DEV+ L ++E +HGD+SQ +R L F+ GK +LVATDVAAR
Sbjct: 241 SIVFARTKRRVDEVARGLVERGYSAEGIHGDLSQDKRLGVLRNFKNGKLDILVATDVAAR 300
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLDI V + ++++P DPE++VHR GRTGRAGKEG ++ TS++ +R++E +
Sbjct: 301 GLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKEGMSVTFVTSNEMSYLRTIEDLTKKQ 360
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 231
+ PP ++ L VV + + E + L E D +A AL +
Sbjct: 361 MSALRPPTTQEALSGQLSNVVEVVKELIEVEDTGMYQEAITYLSENYTEDEIALALVR-- 418
Query: 232 GFSRPPSS 239
+ PSS
Sbjct: 419 SLVKDPSS 426
>gi|393236170|gb|EJD43720.1| DEAD-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 650
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 109/198 (55%), Gaps = 21/198 (10%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + I+ KR+IL D++ K G T++F +TKR AD
Sbjct: 399 IFLSVGRVGSTSENITQKIEY----VEDNEKRSILLDILHAEGKNGLTLIFVETKRMADI 454
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S + + ++HGD SQ +RE L FRQG+ ++VAT VAARGLDIPNV +I+Y
Sbjct: 455 LSDFLYANQFPATSIHGDRSQRERESALATFRQGRTPIMVATAVAARGLDIPNVTHVINY 514
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 185
+LP+D + +VHR GRTGRAG G A F + +R L D+L
Sbjct: 515 DLPSDIDDYVHRIGRTGRAGNTGIATAFFNRGNKNIIRDL----------------VDLL 558
Query: 186 ESSAEQVVATLNGVHPES 203
+ ++V A L+G+ ES
Sbjct: 559 REANQEVPAWLDGMMHES 576
>gi|365855526|ref|ZP_09395572.1| cold-shock DEAD-box protein A family protein, partial
[Acetobacteraceae bacterium AT-5844]
gi|363719030|gb|EHM02348.1| cold-shock DEAD-box protein A family protein, partial
[Acetobacteraceae bacterium AT-5844]
Length = 485
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 117/231 (50%), Gaps = 23/231 (9%)
Query: 79 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS 138
AL G+++Q +R R L G R GK V VATDVAARG+D+P++ L+IH ELP +PET +HRS
Sbjct: 207 ALSGELTQAERSRALQGLRDGKARVCVATDVAARGIDLPDLGLVIHAELPKEPETLLHRS 266
Query: 139 GRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG 198
GRTGRAGK+G ++L+ ++RRT L K E+ P VE++ +E++ A +
Sbjct: 267 GRTGRAGKKGVSVLVVPPNRRRTAERLLMAAKLKAEWGEAPTVEEIRAKDSERLAAQVKA 326
Query: 199 VHPESVEFFTPTAQRLI---------EEKGTDALAAALA---------QLSGFSRPPSSR 240
+ E E A R + L A L +LS +RP
Sbjct: 327 MISEEAEPEDLAAGRALLEEAGAEAVAAALLKVLRAPLPAPEELTPARELSRPARPQREL 386
Query: 241 SLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHII 291
+ E W + + RD G R ++ FL A +EIG+I I+
Sbjct: 387 APGGGEGAWFRMNVGRD-----GQADPRWILPFLCRRGHVAREEIGRIRIM 432
>gi|71019993|ref|XP_760227.1| hypothetical protein UM04080.1 [Ustilago maydis 521]
gi|74701057|sp|Q4P733.1|DED1_USTMA RecName: Full=ATP-dependent RNA helicase DED1
gi|46099796|gb|EAK85029.1| hypothetical protein UM04080.1 [Ustilago maydis 521]
Length = 672
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 97/160 (60%), Gaps = 5/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + I+ KR++L D++ GG T++F +TKR AD
Sbjct: 410 VFLSVGRVGSTSENITQKIEY----VEDDDKRSVLLDVLASMPSGGLTLIFVETKRMADM 465
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S L S I + ++HGD +Q +RER L FR GK ++VAT VAARGLDIPNV +++Y
Sbjct: 466 LSDFLLRSKIGATSIHGDRTQRERERALELFRSGKTPIMVATAVAARGLDIPNVTHVVNY 525
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP+D + +VHR GRTGRAG G A F + VR L
Sbjct: 526 DLPSDVDDYVHRIGRTGRAGNVGHATAFFNRGNKNIVRDL 565
>gi|427725149|ref|YP_007072426.1| DEAD/DEAH box helicase [Leptolyngbya sp. PCC 7376]
gi|427356869|gb|AFY39592.1| DEAD/DEAH box helicase domain protein [Leptolyngbya sp. PCC 7376]
Length = 494
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 111/183 (60%), Gaps = 10/183 (5%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TKR A E++ L +++ HGD+SQ QRE+ + F+ G+ ++VATD+AARG
Sbjct: 246 IIFVRTKRTASELTNELLEAGQSADEYHGDLSQAQREKLVRRFKDGRIKMIVATDIAARG 305
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG--- 170
LD+ N+ +++++LP++ E+++HR GRTGRAGK GTAI + S RR +R +ER V
Sbjct: 306 LDVANLSHVVNFDLPDNTESYIHRIGRTGRAGKTGTAIALVEPSDRRLLRQIERRVKQSL 365
Query: 171 --CKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALA 228
CK P V + + QV L G E + F P +RL +E A+AAA+
Sbjct: 366 TTCKIP-SRPEVEANRINRLETQVREALAG---ERMASFLPIVKRLGDEYDPQAIAAAVL 421
Query: 229 QLS 231
Q++
Sbjct: 422 QMT 424
>gi|239626754|ref|ZP_04669785.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47_FAA]
gi|239516900|gb|EEQ56766.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47FAA]
Length = 572
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 117/208 (56%), Gaps = 5/208 (2%)
Query: 28 YAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQ 86
Y +K ++ L+ +YA +IVF TKR DE+ AL +E LHGD+ Q
Sbjct: 221 YYYEVKPKNKVEVMCRLLDMYAPK-LSIVFCNTKRQVDELVQALQGRGYFAEGLHGDLKQ 279
Query: 87 HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 146
QR+R + FR G+ +LVATDVAARG+D+ +V+ + +Y++P D E +VHR GRTGRAG+
Sbjct: 280 VQRDRVMGSFRNGRTDILVATDVAARGIDVGDVEAVFNYDVPQDDEYYVHRIGRTGRAGR 339
Query: 147 EGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES--V 204
EG A + + +R ++R K + P + D+ E E+V+ + + ++
Sbjct: 340 EGKAFSLVVGKEVYKLRDIQRYCKTKIIPQAIPSLNDITEIKVEKVLDQVMDILNDNDLT 399
Query: 205 EFFTPTAQRLIEEKGTDA-LAAALAQLS 231
+ ++LIEE T LAAAL +++
Sbjct: 400 KMVNIIEKKLIEEDYTSMDLAAALLKMN 427
>gi|372270479|ref|ZP_09506527.1| ATP-dependent RNA helicase RhlE [Marinobacterium stanieri S30]
Length = 420
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 118/197 (59%), Gaps = 14/197 (7%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYAKGG---KTIVFTQTKRDADEVSLALTSI-IAS 77
++ +K A + T K +L LI +GG +T+VFT+TKR AD+V+ L I++
Sbjct: 204 SQQVKQSAYAVTNADKTDVLLYLI----RGGNWQQTLVFTRTKRRADQVAEELQQEGISA 259
Query: 78 EALHGDISQHQRER--TLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 135
A+HGD +HQR+R L F QG+ +VLVATDVAARGLDI + +++Y+LPN PE +V
Sbjct: 260 VAIHGD--RHQRDRLAALEAFTQGEASVLVATDVAARGLDIEALPQVVNYDLPNQPEAYV 317
Query: 136 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED--VLESSAEQVV 193
HR GRTGRAG +G A+ + +RR ++ + +G + P +E+ ++ES A+ V
Sbjct: 318 HRIGRTGRAGLKGWAVSLVAPEERRFLKGISDLIGKSLQVQPVPTLENGQLVESGAQAVT 377
Query: 194 ATLNGVHPESVEFFTPT 210
G P + + PT
Sbjct: 378 GKRKGTKPSARKTSKPT 394
>gi|152996400|ref|YP_001341235.1| DEAD/DEAH box helicase [Marinomonas sp. MWYL1]
gi|150837324|gb|ABR71300.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
Length = 632
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 112/186 (60%), Gaps = 4/186 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK E++ LT+ A EAL+GDISQ+ RERT++ ++G+ +LVATDV ARG
Sbjct: 251 IIFVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVDRIKKGQIDILVATDVVARG 310
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ V +++Y++P D E++VHR GRTGRAG+ GTAIL +RR ++++ER
Sbjct: 311 LDVERVSHVVNYDIPYDTESYVHRIGRTGRAGRSGTAILFVAHRERRMLQAIERATRQPI 370
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDAL--AAALAQL 230
E ++ P D+ + ++ + + E ++FF Q +E D L AAALA +
Sbjct: 371 ESMTLPTASDINAHRVNRFKQSITDAMDNEDLDFFLELVQSYQKENEVDPLKMAAALAHM 430
Query: 231 SGFSRP 236
+ P
Sbjct: 431 AQGKTP 436
>gi|269123479|ref|YP_003306056.1| DEAD/DEAH box helicase [Streptobacillus moniliformis DSM 12112]
gi|268314805|gb|ACZ01179.1| DEAD/DEAH box helicase domain protein [Streptobacillus moniliformis
DSM 12112]
Length = 543
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 110/175 (62%), Gaps = 2/175 (1%)
Query: 55 IVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK + DEV+ L + +EA+HGDI+Q RE+ L+ F+ +LVATDVAARG
Sbjct: 243 IVFCRTKSEVDEVTNKLKARNYDAEAIHGDITQGLREKALDLFKNKILNILVATDVAARG 302
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ N+ +I+Y +P + +++VHR GRTGRAG +G AI T + R + ++R+
Sbjct: 303 IDVSNLTHVINYSIPQESDSYVHRIGRTGRAGNKGIAITFVTPQESRKLAQIKRETKSDI 362
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPES-VEFFTPTAQRLIEEKGTDALAAAL 227
+ + P VED++ + E ++A++ + E+ + + A +L++ K T+A A+L
Sbjct: 363 KKENIPNVEDIINAKEELLIASVEEIMLENDYKLYLDLANKLLKGKNTEAAVASL 417
>gi|401411071|ref|XP_003884983.1| DEAD box RNA helicase, related [Neospora caninum Liverpool]
gi|325119402|emb|CBZ54955.1| DEAD box RNA helicase, related [Neospora caninum Liverpool]
Length = 853
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 98/166 (59%), Gaps = 3/166 (1%)
Query: 36 SKRTILSDLITVYAKGGK---TIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERT 92
S+ +L DL+++Y G+ I+F +TK++ + +++A LHGDI Q+QRE T
Sbjct: 384 SRAHVLGDLLSLYTPPGRASSVIIFAETKQEVNSIAVASNIRHLCAPLHGDIPQNQREAT 443
Query: 93 LNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 152
LN F++GKF LVATDVAARGL + ++ L+I P D +T++HR+GRTGRAG+ G I
Sbjct: 444 LNAFKKGKFACLVATDVAARGLHVDDLSLVIQISPPRDVDTYIHRAGRTGRAGRTGVCIT 503
Query: 153 MFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG 198
+ S + +R +ERD G F V P V Q + L G
Sbjct: 504 LAKLSDVQFLRRIERDGGFLFRRVGTPQPRAVRRQLLLQHIDKLQG 549
>gi|282890698|ref|ZP_06299218.1| hypothetical protein pah_c026o010 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175666|ref|YP_004652476.1| deAD-box ATP-dependent RNA helicase CshA [Parachlamydia
acanthamoebae UV-7]
gi|281499291|gb|EFB41590.1| hypothetical protein pah_c026o010 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336480024|emb|CCB86622.1| deAD-box ATP-dependent RNA helicase CshA [Parachlamydia
acanthamoebae UV-7]
Length = 538
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Query: 52 GKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 110
K+I+F +TK+D D VS LTS + LHGD+ Q QR+R ++GFRQ +F +L ATDVA
Sbjct: 287 AKSIIFCRTKKDVDRVSSFLTSRGYGARGLHGDMEQPQRQRVIDGFRQNEFQILAATDVA 346
Query: 111 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 170
ARGL++ +V + +Y LP + E++VHR GRTGRAG +G AI + + ++ + R+ G
Sbjct: 347 ARGLNVLDVTHVYNYHLPYETESYVHRIGRTGRAGNKGIAITLLNPREVSGLKHIFREHG 406
Query: 171 CKFEFVSPPVVEDVLESSAEQVVATLNGVH 200
E+ S P ++DV AE+ + + H
Sbjct: 407 GNIEYQSIPTLQDVKRKFAEKFLKKVQQRH 436
>gi|384262634|ref|YP_005417821.1| Superfamily II DNA and RNA helicase [Rhodospirillum photometricum
DSM 122]
gi|378403735|emb|CCG08851.1| Superfamily II DNA and RNA helicase [Rhodospirillum photometricum
DSM 122]
Length = 510
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 104/171 (60%), Gaps = 3/171 (1%)
Query: 1 MLNYFVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQT 60
+ N F+ Q+ Q + E I+ + +KR +L DL+ A+G ++I+FT+T
Sbjct: 199 LANDFLRDPCEVQIAPQSRPI-ERIEQSVMMVEGHAKRDVLVDLLRQNAEG-RSIIFTRT 256
Query: 61 KRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 119
KR AD V+ L S + +E++HG+ SQ QR+R L F+ +LVATD+AARG+D+ +
Sbjct: 257 KRGADRVTDHLRASGLPAESIHGNKSQVQRDRALAAFKGTMVRILVATDIAARGIDVDGI 316
Query: 120 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 170
+ +YELPN PE +VHR GRT RAG G AI + S+R +R +ER +G
Sbjct: 317 SFVYNYELPNVPEAYVHRIGRTARAGASGVAISLCDPSERPLLRDIERLIG 367
>gi|315635445|ref|ZP_07890711.1| ATP-dependent RNA helicase DeaD [Arcobacter butzleri JV22]
gi|315480203|gb|EFU70870.1| ATP-dependent RNA helicase DeaD [Arcobacter butzleri JV22]
Length = 516
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 84/123 (68%), Gaps = 1/123 (0%)
Query: 53 KTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111
K+I+F +TK+D D +S L S ++ALHGD+ Q QRE + F+ K +L+ATDVAA
Sbjct: 238 KSIIFCRTKKDVDRLSTFLVSQGFMAKALHGDMEQKQREEAIRAFKSSKLEILIATDVAA 297
Query: 112 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 171
RGLD+ +V + +Y LP D E++VHR GRTGRAGKEG AI + T + R ++ +E+ +G
Sbjct: 298 RGLDVNDVTHVFNYHLPFDSESYVHRIGRTGRAGKEGMAISIVTPHEFRMLQKIEKSIGT 357
Query: 172 KFE 174
K E
Sbjct: 358 KLE 360
>gi|229918086|ref|YP_002886732.1| DEAD/DEAH box helicase [Exiguobacterium sp. AT1b]
gi|229469515|gb|ACQ71287.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
Length = 509
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 112/189 (59%), Gaps = 6/189 (3%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+I+F +TK+ DEV+ AL ++ LHGD++Q +R++ + F+ G +LVATDVAAR
Sbjct: 243 SIIFARTKKRVDEVTEALIKRGYTADGLHGDLTQSKRDQVIRRFKNGTIDILVATDVAAR 302
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLDI V + ++++P DPE++VHR GRTGRAGK GTA+ T + V+++ER K
Sbjct: 303 GLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGTALTFITPREFGQVKAIERVTNKK 362
Query: 173 FEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEE-KGTDALAAALAQL 230
P + +VLE + +Q L V + +T A L+EE + + LAAA L
Sbjct: 363 MNRRHVPTIAEVLEGNQKQAAEELIERVQAGDFKAYTQLATELLEEYEAVEILAAA---L 419
Query: 231 SGFSRPPSS 239
G ++ P S
Sbjct: 420 RGLTKEPDS 428
>gi|157736313|ref|YP_001488996.1| DEAD/DEAH box helicase [Arcobacter butzleri RM4018]
gi|157698167|gb|ABV66327.1| ATP-dependent RNA helicase, DEAD box family [Arcobacter butzleri
RM4018]
Length = 516
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 84/123 (68%), Gaps = 1/123 (0%)
Query: 53 KTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111
K+I+F +TK+D D +S L S ++ALHGD+ Q QRE + F+ K +L+ATDVAA
Sbjct: 238 KSIIFCRTKKDVDRLSTFLVSQGFMAKALHGDMEQKQREEAIRAFKSSKLEILIATDVAA 297
Query: 112 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 171
RGLD+ +V + +Y LP D E++VHR GRTGRAGKEG AI + T + R ++ +E+ +G
Sbjct: 298 RGLDVNDVTHVFNYHLPFDSESYVHRIGRTGRAGKEGMAISIVTPHEFRMLQKIEKSIGT 357
Query: 172 KFE 174
K E
Sbjct: 358 KLE 360
>gi|169831556|ref|YP_001717538.1| DEAD/DEAH box helicase [Candidatus Desulforudis audaxviator MP104C]
gi|169638400|gb|ACA59906.1| DEAD/DEAH box helicase domain protein [Candidatus Desulforudis
audaxviator MP104C]
Length = 533
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 94/139 (67%), Gaps = 1/139 (0%)
Query: 53 KTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111
+ I+F +TKR DE++ AL S +++ +HGD+ Q+QR R + FR+G+ +LVATDVAA
Sbjct: 248 RAIIFCRTKRRVDELAEALRSRGYSADHIHGDLEQNQRNRVMGAFREGEIDLLVATDVAA 307
Query: 112 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 171
RG+D+ N+ +I+Y+ P DPE++VHR GRTGRAG+ GTAI + + +R+++R V
Sbjct: 308 RGIDVQNISHVINYDCPQDPESYVHRIGRTGRAGRTGTAITLVYPKELPLLRTIQRLVKV 367
Query: 172 KFEFVSPPVVEDVLESSAE 190
+ E P + DV++ E
Sbjct: 368 RIERHPIPSLADVVDRRME 386
>gi|311071129|ref|YP_003976052.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
gi|419823024|ref|ZP_14346587.1| ATP-dependent RNA helicase [Bacillus atrophaeus C89]
gi|310871646|gb|ADP35121.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
gi|388472831|gb|EIM09591.1| ATP-dependent RNA helicase [Bacillus atrophaeus C89]
Length = 497
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 107/179 (59%), Gaps = 2/179 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE+S AL +E +HGD++Q +R L F+QG VLVATDVAARG
Sbjct: 245 IVFGRTKRRVDELSEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARG 304
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++E+ K
Sbjct: 305 LDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTTKRKM 364
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALAAALAQLS 231
+ + P +++ +E + V L + E ++ F+ A L+E+ + AA ++S
Sbjct: 365 DRMKEPTLDEAIEGQQQVTVDRLRTIISENNLNFYMTAAAELLEDHDAVTVVAAAIKMS 423
>gi|384162855|ref|YP_005544234.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
amyloliquefaciens LL3]
gi|328910410|gb|AEB62006.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
amyloliquefaciens LL3]
Length = 480
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 110/187 (58%), Gaps = 4/187 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLVATDVAARG
Sbjct: 231 IVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARG 290
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++E+ K
Sbjct: 291 LDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKM 350
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ + P +++ LE + V L + ++ F+ A L+E+ DA+ A +
Sbjct: 351 DRMKEPTLDEALEGQQQVTVDRLRTTISENNLNFYMTAAAELLEDH--DAVTVVAAAIKM 408
Query: 233 FSRPPSS 239
++ P S
Sbjct: 409 ATKEPDS 415
>gi|384154754|ref|YP_005537569.1| DEAD/DEAH box helicase [Arcobacter butzleri ED-1]
gi|345468308|dbj|BAK69759.1| DEAD-box ATP dependent DNA helicase [Arcobacter butzleri ED-1]
Length = 516
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 84/123 (68%), Gaps = 1/123 (0%)
Query: 53 KTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111
K+I+F +TK+D D +S L S ++ALHGD+ Q QRE + F+ K +L+ATDVAA
Sbjct: 238 KSIIFCRTKKDVDRLSTFLVSQGFMAKALHGDMEQKQREEAIRAFKSSKLEILIATDVAA 297
Query: 112 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 171
RGLD+ +V + +Y LP D E++VHR GRTGRAGKEG AI + T + R ++ +E+ +G
Sbjct: 298 RGLDVNDVTHVFNYHLPFDSESYVHRIGRTGRAGKEGMAISIVTPHEFRMLQKIEKSIGT 357
Query: 172 KFE 174
K E
Sbjct: 358 KLE 360
>gi|34557821|ref|NP_907636.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Wolinella
succinogenes DSM 1740]
gi|34483539|emb|CAE10536.1| ATP-DEPENDENT RNA HELICASE, DEAD-BOX FAMILY DEAD [Wolinella
succinogenes]
Length = 505
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 93/145 (64%), Gaps = 1/145 (0%)
Query: 53 KTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111
KTI+FT+ K++AD++S L + + ALHGD+ Q +R+ +N F+QG +LVATDVAA
Sbjct: 253 KTIIFTRMKKEADDLSNRLIAKGYQAGALHGDMEQRERQAAVNAFKQGAIDILVATDVAA 312
Query: 112 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 171
RGLDI NV + +Y +P +PE++VHR GRTGRAGK+G AI + T + + +R +
Sbjct: 313 RGLDISNVSHVFNYHIPLNPESYVHRIGRTGRAGKKGIAITLATPLEFKEIRRISETTKA 372
Query: 172 KFEFVSPPVVEDVLESSAEQVVATL 196
E P + + L+ + +++ L
Sbjct: 373 TIELYEIPTIAETLKQTDSKLIQNL 397
>gi|408370410|ref|ZP_11168187.1| DEAD/DEAH box helicase [Galbibacter sp. ck-I2-15]
gi|407744168|gb|EKF55738.1| DEAD/DEAH box helicase [Galbibacter sp. ck-I2-15]
Length = 575
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 104/165 (63%), Gaps = 2/165 (1%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+++F +TKRD +V+ L + ALHGD+SQ+QR+ + FR + +LVATDVAAR
Sbjct: 245 SVIFCRTKRDTQKVAEKLIEDGYNAGALHGDLSQNQRDMVMKSFRNKQIQMLVATDVAAR 304
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+D+ ++ +I+Y+LP++ ET+ HRSGRTGRAGK G ++++ T S+ R + ++ER + K
Sbjct: 305 GIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIITKSELRKISAIERIIKQK 364
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVH-PESVEFFTPTAQRLIE 216
F+ P +++ E + + + + VE + P + ++E
Sbjct: 365 FDAKKIPSADEICEIQLYHLASKIKNTEVNKEVETYLPAIEDVLE 409
>gi|261337257|ref|ZP_05965141.1| ATP-dependent RNA helicase [Bifidobacterium gallicum DSM 20093]
gi|270277617|gb|EFA23471.1| ATP-dependent RNA helicase [Bifidobacterium gallicum DSM 20093]
Length = 662
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 89/130 (68%), Gaps = 2/130 (1%)
Query: 38 RTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNG 95
R+ +L+ A G G+ I+FT+TK A +++ +LT I + LHG++SQ+QR+R L
Sbjct: 282 RSDKPELVRALASGTGRRILFTRTKFQAKKLAKSLTQQGIPAAELHGNLSQNQRDRNLAA 341
Query: 96 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 155
F QG VLVATDVAARG+D+ VDL++ + P DP+ F+HRSGRT RAG+EG I + T
Sbjct: 342 FEQGNVNVLVATDVAARGIDVSGVDLVVQVDPPEDPKAFLHRSGRTARAGREGDVITIMT 401
Query: 156 SSQRRTVRSL 165
QRR V+SL
Sbjct: 402 PDQRRYVKSL 411
>gi|24375521|ref|NP_719564.1| ATP-dependent RNA helicase DeaD [Shewanella oneidensis MR-1]
gi|24350394|gb|AAN57008.1|AE015835_4 ATP-dependent RNA helicase DeaD [Shewanella oneidensis MR-1]
Length = 623
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 123/248 (49%), Gaps = 22/248 (8%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTA---------TSKRTILSDLITVYAKGGK--TI 55
M +V N+ K A I + A TT S+ L L+ V I
Sbjct: 189 MPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVENTEGII 248
Query: 56 VFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 114
+F +T+ E++ L + AS LHGD++Q RER + + GK +L+ATDVAARGL
Sbjct: 249 IFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIATDVAARGL 308
Query: 115 DIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 174
D+ + +++Y++P D E +VHR GRTGRAG+ G AIL TS + R +R++ER +
Sbjct: 309 DVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNSRIS 368
Query: 175 FVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIE--EKGTDALAAALA 228
+ P E V E EQ+ T+N +EF +L + E TD LAAAL
Sbjct: 369 PMKVPSPETVAERRLSRLGEQLAQTMNN----DLEFMREAVAQLCQQLEVDTDLLAAALL 424
Query: 229 QLSGFSRP 236
RP
Sbjct: 425 HQVQQERP 432
>gi|427403697|ref|ZP_18894579.1| hypothetical protein HMPREF9710_04175 [Massilia timonae CCUG 45783]
gi|425717680|gb|EKU80636.1| hypothetical protein HMPREF9710_04175 [Massilia timonae CCUG 45783]
Length = 539
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 89/135 (65%), Gaps = 8/135 (5%)
Query: 53 KTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111
+ +VFT TKRDAD ++ L + A+ ALHGD+ Q R RTL+ R+G VLVATDVAA
Sbjct: 278 QAVVFTATKRDADMIADRLNIAGFAAAALHGDMHQGARNRTLDSLRRGSVKVLVATDVAA 337
Query: 112 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 171
RG+D+PN+ +++Y+LP PE +VHR GRTGRAG+ GTAI + ++ +R +ER
Sbjct: 338 RGIDVPNITHVVNYDLPKFPEDYVHRIGRTGRAGRNGTAISLVNHAENMNIRRIER---- 393
Query: 172 KFEFVSPPVVEDVLE 186
F P+ +V+E
Sbjct: 394 ---FTRQPIPVNVIE 405
>gi|407775962|ref|ZP_11123253.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Thalassospira profundimaris WP0211]
gi|407281034|gb|EKF06599.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Thalassospira profundimaris WP0211]
Length = 605
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 107/168 (63%), Gaps = 7/168 (4%)
Query: 1 MLNYFVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQT 60
ML+ V S T V E++ + + L T KR +L++L+ A +T+VFT+T
Sbjct: 201 MLSDPVKVS-VTPVATTQERVEQSVYLI----ERTRKRQLLAELLDNPAFK-RTLVFTRT 254
Query: 61 KRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 119
KR AD V+ L + I++ A+HG+ SQ+QRER LN F+ G+ VLVATD+AARG+D+ +V
Sbjct: 255 KRGADRVARHLEANKISAAAIHGNKSQNQRERALNAFKDGQINVLVATDIAARGIDVDSV 314
Query: 120 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 167
++++ELPN PE++VHR GRT R G G+AI +R +R +E+
Sbjct: 315 THVVNFELPNVPESYVHRIGRTARGGASGSAIAFCDEEERGLLRDIEK 362
>gi|308172326|ref|YP_003919031.1| DEAD/DEAH box helicase [Bacillus amyloliquefaciens DSM 7]
gi|307605190|emb|CBI41561.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
amyloliquefaciens DSM 7]
Length = 511
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 110/187 (58%), Gaps = 4/187 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLVATDVAARG
Sbjct: 262 IVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARG 321
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++E+ K
Sbjct: 322 LDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKM 381
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ + P +++ LE + V L + ++ F+ A L+E+ DA+ A +
Sbjct: 382 DRMKEPTLDEALEGQQQVTVDRLRTTISENNLNFYMTAAAELLEDH--DAVTVVAAAIKM 439
Query: 233 FSRPPSS 239
++ P S
Sbjct: 440 ATKEPDS 446
>gi|384158050|ref|YP_005540123.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
amyloliquefaciens TA208]
gi|384167076|ref|YP_005548454.1| ATP-dependent RNA helicase [Bacillus amyloliquefaciens XH7]
gi|328552138|gb|AEB22630.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
amyloliquefaciens TA208]
gi|341826355|gb|AEK87606.1| putative ATP-dependent RNA helicase [Bacillus amyloliquefaciens
XH7]
Length = 494
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 110/187 (58%), Gaps = 4/187 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLVATDVAARG
Sbjct: 245 IVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARG 304
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++E+ K
Sbjct: 305 LDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKM 364
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ + P +++ LE + V L + ++ F+ A L+E+ DA+ A +
Sbjct: 365 DRMKEPTLDEALEGQQQVTVDRLRTTISENNLNFYMTAAAELLEDH--DAVTVVAAAIKM 422
Query: 233 FSRPPSS 239
++ P S
Sbjct: 423 ATKEPDS 429
>gi|210623578|ref|ZP_03293904.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
gi|210153448|gb|EEA84454.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
Length = 538
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 77
E E IK Y I T A++K +LS LI VY ++VF TK+ ADE+ L +
Sbjct: 212 ELTVENIKQYYIETRASNKIEVLSRLIDVY-NPKLSVVFCNTKKGADELVGELQGRGYFA 270
Query: 78 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
+ALHGD+ Q QR+ ++ FR G +LVATDVAARG+D+ +V+ + +++LP D E +VHR
Sbjct: 271 DALHGDLKQVQRDIVMDKFRNGTIDILVATDVAARGIDVDDVECVFNFDLPQDEEYYVHR 330
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA 189
GRTGRAG+EG + R ++ +ER K E P V DV E
Sbjct: 331 IGRTGRAGREGLSFSFVYGRDMRKMKDIERYTKSKLEKHPIPTVGDVEEKKV 382
>gi|119500998|ref|XP_001267256.1| ATP dependent RNA helicase (Dbp1), putative [Neosartorya fischeri
NRRL 181]
gi|134034091|sp|A1CXK7.1|DED1_NEOFI RecName: Full=ATP-dependent RNA helicase ded1
gi|119415421|gb|EAW25359.1| ATP dependent RNA helicase (Dbp1), putative [Neosartorya fischeri
NRRL 181]
Length = 676
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 94/160 (58%), Gaps = 5/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + ++ KR++L D++ + G T++F +TKR AD
Sbjct: 412 VFLSVGRVGSTSENITQKVEY----VEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADA 467
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S L + A+HGD +Q +RER L FR G+ +LVAT VAARGLDIPNV +I+Y
Sbjct: 468 LSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINY 527
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP D + +VHR GRTGRAG G A F R VR L
Sbjct: 528 DLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVREL 567
>gi|350632116|gb|EHA20484.1| hypothetical protein ASPNIDRAFT_203639 [Aspergillus niger ATCC
1015]
Length = 1569
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 83/130 (63%), Gaps = 1/130 (0%)
Query: 37 KRTILSDLITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHGDISQHQRERTLNG 95
KR++L D++ + G T++F +TKR AD +S L + A+HGD +Q +RER L
Sbjct: 435 KRSVLLDILHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERALEM 494
Query: 96 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 155
FR G+ +LVAT VAARGLDIPNV +I+Y+LP D + +VHR GRTGRAG G A F
Sbjct: 495 FRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFN 554
Query: 156 SSQRRTVRSL 165
R VR L
Sbjct: 555 RGNRGVVRDL 564
>gi|325285240|ref|YP_004261030.1| DEAD/DEAH box helicase [Cellulophaga lytica DSM 7489]
gi|324320694|gb|ADY28159.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
7489]
Length = 602
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 102/165 (61%), Gaps = 2/165 (1%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
++VF +TKRD V+ L + ALHGD+SQ+QR+ +N FR+ + +LVATDVAAR
Sbjct: 245 SVVFCRTKRDTQRVAEKLIEDGYNAGALHGDLSQNQRDLVMNAFRKKQIQMLVATDVAAR 304
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+D+ ++ +I+Y+LP++ ET+ HRSGRTGRAGK G ++++ T S+ R +++LER + +
Sbjct: 305 GIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGVSMVIVTRSELRKIKALERKLQTE 364
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVH-PESVEFFTPTAQRLIE 216
F P ++ E + + + VE + P ++E
Sbjct: 365 FLSKKIPTGMEICEIQLHHLANKIKDTEINDEVESYLPAINEILE 409
>gi|89072916|ref|ZP_01159473.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
gi|89051438|gb|EAR56893.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
Length = 654
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 113/187 (60%), Gaps = 4/187 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T++D + ++ L+S + ALHGDI Q RERT++ ++G +LVATDV AR
Sbjct: 274 SIVFVRTRQDTERLADWLSSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILVATDVVAR 333
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P + + +Y++P D E+++HR GRTGRAG+ G AIL+ ++Q R +R++ER +
Sbjct: 334 GLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRAGKAILLVRTNQIRMLRTIERVTKSR 393
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDA--LAAALAQ 229
E + P+ + V S ++ L + SVE F ++L E DA LAA L Q
Sbjct: 394 MEEIQLPLRDLVAASRLNRLGEELAAQKEQTSVEAFVELVEKLQESIDVDAATLAAMLLQ 453
Query: 230 LSGFSRP 236
+RP
Sbjct: 454 RQQGNRP 460
>gi|238491700|ref|XP_002377087.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus flavus
NRRL3357]
gi|220697500|gb|EED53841.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus flavus
NRRL3357]
Length = 676
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 94/160 (58%), Gaps = 5/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + ++ KR++L D++ + G T++F +TKR AD
Sbjct: 409 VFLSVGRVGSTSENITQKVEY----VEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADS 464
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S L + A+HGD +Q +RER L FR G+ +LVAT VAARGLDIPNV +I+Y
Sbjct: 465 LSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINY 524
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP D + +VHR GRTGRAG G A F R VR L
Sbjct: 525 DLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDL 564
>gi|91200410|emb|CAJ73457.1| strongly similar to ATP-dependent RNA helicase [Candidatus Kuenenia
stuttgartiensis]
Length = 524
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 132/242 (54%), Gaps = 6/242 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VF +TK D D V+ L ++ALHGDISQ RE+ L F++ + +L+ATDVAARG
Sbjct: 245 LVFCRTKIDVDAVASHLIERGYDADALHGDISQSLREKILAKFKKRQINILIATDVAARG 304
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI N+ +I+Y LP DPE++VHR GRTGRAGK G AI T + R ++ +++
Sbjct: 305 LDIHNLSHVINYSLPQDPESYVHRIGRTGRAGKGGIAITFITPEEYRKLQFIQKAAKTDI 364
Query: 174 EFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
P +ED++ + ++ +N V + + A+ L E K + + +AL Q S
Sbjct: 365 RKEKLPKIEDIIRTKKLKIKDHINEIVDLNAHNCYIEMAKELTEHKKPEDIISALLQYS- 423
Query: 233 FSRPPSSRSLINHEQGWVTLQLTRDSAFSRGF---MSARSVMGFLSDVYPTAADEIGKIH 289
F + + + E+ V + ++G ++ + ++ ++ D+ A+++I +
Sbjct: 424 FPDELNEKRYVEIEEAVVDKKGKTRLFVTQGKQEGLTHKKLVTYIKDISNIASEKIRDVQ 483
Query: 290 II 291
I+
Sbjct: 484 IL 485
>gi|373456662|ref|ZP_09548429.1| DEAD/DEAH box helicase domain protein [Caldithrix abyssi DSM 13497]
gi|371718326|gb|EHO40097.1| DEAD/DEAH box helicase domain protein [Caldithrix abyssi DSM 13497]
Length = 527
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 110/181 (60%), Gaps = 6/181 (3%)
Query: 55 IVFTQTKRDADEVSLA---LTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111
++F +T++DA SLA L ++EA+HG+ISQ QRER+LN F+ K +LVATDVAA
Sbjct: 248 LIFCKTRKDA--ASLAEDLLERGYSAEAIHGEISQGQRERSLNRFKSRKVNILVATDVAA 305
Query: 112 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 171
RG+D+ ++ +I+Y LP DPE++VHR GRTGRAGK+G A+ T + R + +++ G
Sbjct: 306 RGIDVNDISHVINYALPQDPESYVHRIGRTGRAGKQGVAVTFVTPGETRKFQFIQQIAGR 365
Query: 172 KFEFVSPPVVEDVLESSAEQVVATLNGVHPESVE-FFTPTAQRLIEEKGTDALAAALAQL 230
K P +D++ + ++ L + ++ + AQ L+++ + AA+ Q
Sbjct: 366 KIMKARLPRAQDIINAKRNKISEQLKNISEGKIDKHYLEWAQELLKDNDPAEVLAAVLQF 425
Query: 231 S 231
S
Sbjct: 426 S 426
>gi|311031130|ref|ZP_07709220.1| DEAD/DEAH box helicase domain protein [Bacillus sp. m3-13]
Length = 507
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 110/185 (59%), Gaps = 4/185 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TKR DE+S AL ++E +HGD+SQ +R L F++G VLVATDVAARG
Sbjct: 244 IIFGRTKRRVDELSDALNVRGYSAEGIHGDLSQAKRMSVLRKFKEGSIDVLVATDVAARG 303
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G AI + + + +ER K
Sbjct: 304 LDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAITFVSPREVSYLHHVERVTKRKM 363
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ + P +++ LE + + L V +++ F+ A++L+EE DA+ A L
Sbjct: 364 DKLKAPTLDEALEGQQKMSMEKLTQAVEAKNLGFYRNAAEQLLEEH--DAITLVSAALKL 421
Query: 233 FSRPP 237
F++ P
Sbjct: 422 FTKEP 426
>gi|169773691|ref|XP_001821314.1| ATP-dependent RNA helicase ded1 [Aspergillus oryzae RIB40]
gi|91206555|sp|Q2UGK3.1|DED1_ASPOR RecName: Full=ATP-dependent RNA helicase ded1
gi|83769175|dbj|BAE59312.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 675
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 94/160 (58%), Gaps = 5/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + ++ KR++L D++ + G T++F +TKR AD
Sbjct: 408 VFLSVGRVGSTSENITQKVEY----VEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADS 463
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S L + A+HGD +Q +RER L FR G+ +LVAT VAARGLDIPNV +I+Y
Sbjct: 464 LSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINY 523
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP D + +VHR GRTGRAG G A F R VR L
Sbjct: 524 DLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDL 563
>gi|253681284|ref|ZP_04862082.1| cold-shock deAd box protein a [Clostridium botulinum D str. 1873]
gi|253562522|gb|EES91973.1| cold-shock deAd box protein a [Clostridium botulinum D str. 1873]
Length = 528
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 142/291 (48%), Gaps = 25/291 (8%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+++F TK+ DEV L + +E LHGD+ Q QR+R +N FR G +LVATDVAAR
Sbjct: 246 SVIFCNTKKRVDEVVSQLQARGYFAEGLHGDMKQPQRDRVMNKFRNGTIEILVATDVAAR 305
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+D+ +V+ + +Y+LP D E +VHR GRTGRAG+ G A R +R +ER K
Sbjct: 306 GIDVDDVEAVFNYDLPQDEEYYVHRIGRTGRAGRSGIAFTFVAGKAIRKLRDIERYTKTK 365
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHPESV--EFFTPTAQRLIEEKGTDALAAALAQL 230
+ P DV E + + G E ++ L E+ T +AAAL ++
Sbjct: 366 VKRAEIPSASDVEEFKVNAFLEKVKGTIEEGHLGKYIDYIENLLDEDYATIDIAAALLKM 425
Query: 231 SGFSRPPSSRSLINHEQG---------WVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTA 281
S IN E G + + + R++ + AR V+G ++ A
Sbjct: 426 SLGEEKKEEILDINEEIGDTGAEPGMVRLFINIGRNNK-----IQARDVIGAIAGETGIA 480
Query: 282 ADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTI--SKITKLPA 330
IGKI I + ++P+E A+E+L +I NTI KI PA
Sbjct: 481 GKVIGKIDIYD----KFTFVEVPKENAREVL--EIMKNNTIKGKKINIEPA 525
>gi|254505608|ref|ZP_05117754.1| cold-shock deAd box protein a [Vibrio parahaemolyticus 16]
gi|219551261|gb|EED28240.1| cold-shock deAd box protein a [Vibrio parahaemolyticus 16]
Length = 647
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 72/187 (38%), Positives = 113/187 (60%), Gaps = 4/187 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LVATDV AR
Sbjct: 248 SIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++ER
Sbjct: 308 GLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTIERVTKSS 367
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTDA--LAAALAQ 229
E + P + V ES ++ A L +++E F+ ++L E DA LAA L +
Sbjct: 368 MEEIQLPHRDKVAESRLAKLGAELETEKEHKALEKFSELVEKLQESLELDAATLAAILLK 427
Query: 230 LSGFSRP 236
RP
Sbjct: 428 RQQGKRP 434
>gi|428204428|ref|YP_007083017.1| DNA/RNA helicase [Pleurocapsa sp. PCC 7327]
gi|427981860|gb|AFY79460.1| DNA/RNA helicase, superfamily II [Pleurocapsa sp. PCC 7327]
Length = 472
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 106/181 (58%), Gaps = 8/181 (4%)
Query: 55 IVFTQTKRDADEVSLALTSIIAS-EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK+ A E++ L S + HGD+SQ QRER + FR+GK ++VATD+AARG
Sbjct: 246 IIFVRTKQTAAELTSKLQEAGQSVDEYHGDLSQIQRERLVQRFREGKVRLVVATDIAARG 305
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ N+ +I+Y+LP++ ET++HR GRTGRAGK GTAI + RR ++ +ER +
Sbjct: 306 LDVENLSHVINYDLPDNTETYIHRIGRTGRAGKTGTAIALVEPIDRRALKQIERRLRQNI 365
Query: 174 EFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 229
E P V LE Q+ +L G E + F P + L E A+AAA Q
Sbjct: 366 EVSRIPTRSQVEAKRLEKLQAQIKESLAG---ERMASFLPLVRELSAEYDPQAIAAAALQ 422
Query: 230 L 230
+
Sbjct: 423 M 423
>gi|326789718|ref|YP_004307539.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
gi|326540482|gb|ADZ82341.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
5427]
Length = 592
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 116/198 (58%), Gaps = 5/198 (2%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGK-TIVFTQTKRDADEVSLALTSI-IASEALHG 82
+K Y + ++K +LS LI A K ++VF TKR D++ L + ++E+LHG
Sbjct: 220 VKQYYLEVRDSNKVEVLSRLID--ANNFKLSVVFCNTKRRVDDLCRDLQARGYSAESLHG 277
Query: 83 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 142
D+ Q QR+ ++ FR G +L+ATDVAARG+D+ +VD + +Y++P+D E +VHR GRTG
Sbjct: 278 DMKQLQRDNVMSRFRNGLIDILIATDVAARGIDVDDVDAVFNYDVPSDEEYYVHRIGRTG 337
Query: 143 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 202
RA +EG + + +R ++R K + + PP +ED+ E+ ++ + + E
Sbjct: 338 RAQREGVSYTFAAGKELAKLRDIQRYTKSKIKLIKPPSIEDIQENKLSGIIDDVKAILAE 397
Query: 203 -SVEFFTPTAQRLIEEKG 219
+ +T ++++EE G
Sbjct: 398 GKLTKYTGFIEKMLEEVG 415
>gi|374710226|ref|ZP_09714660.1| hypothetical protein SinuC_08385 [Sporolactobacillus inulinus CASD]
Length = 480
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 118/212 (55%), Gaps = 18/212 (8%)
Query: 53 KTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111
+ IVF +TKR DE+ AL +E +HGD++Q +R+ L F+Q + +LVATDVAA
Sbjct: 241 RAIVFGRTKRRVDELMRALQKRGYEAEGIHGDLTQSKRDLVLRRFKQNEVKLLVATDVAA 300
Query: 112 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 171
RGLDI NV + +++LP DPE++VHR GRTGRAGK G A+ T S+ +RS+ER
Sbjct: 301 RGLDISNVTHVYNFDLPQDPESYVHRIGRTGRAGKTGMALTFITPSEFPHLRSIERLTKQ 360
Query: 172 KFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEF--FTPTAQRLIEE-KGTDALAAALA 228
+ ++ P E+ L + + L + ES ++ + AQ L++E TD LAAAL
Sbjct: 361 PMKQLNAPSYEEALAGQQKIAIDNLKEM-IESGKYRSYAAKAQDLLDEFDATDVLAAAL- 418
Query: 229 QLSGFSRPPSSRSLINHEQGWVTLQLTRDSAF 260
LI E ++LTR+
Sbjct: 419 ------------KLITKEPDTTPVRLTREQPL 438
>gi|374385841|ref|ZP_09643343.1| hypothetical protein HMPREF9449_01729 [Odoribacter laneus YIT
12061]
gi|373224786|gb|EHP47122.1| hypothetical protein HMPREF9449_01729 [Odoribacter laneus YIT
12061]
Length = 596
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 103/168 (61%), Gaps = 11/168 (6%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+FT+TK DA +++ L I +ALHGD+SQ QR+ + FR + VLVATDVAARG
Sbjct: 246 IIFTRTKIDARDIAHKLQKDGIDCDALHGDLSQAQRDEVMARFRSKRLKVLVATDVAARG 305
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ N+ +I+Y LP D E++ HRSGRTGRAGKEG ++ + S ++ +R +E + +F
Sbjct: 306 LDVDNLTHVINYNLPEDVESYTHRSGRTGRAGKEGISVAIINSKEKSKLRRIEGILKKQF 365
Query: 174 EFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIEE 217
E+ P E+V + A++++A E E TP Q L ++
Sbjct: 366 EYKEVPGGEEVCRAQLLYYADKILAA------EQKETLTPYQQELFDK 407
>gi|440747418|ref|ZP_20926677.1| Cold-shock DEAD-box protein A [Mariniradius saccharolyticus AK6]
gi|436484338|gb|ELP40342.1| Cold-shock DEAD-box protein A [Mariniradius saccharolyticus AK6]
Length = 607
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 93/136 (68%), Gaps = 4/136 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
++VF TKR DEV+ L + I +EALHGD+SQ QR + + FR+G +VLVATDVAAR
Sbjct: 247 SVVFCNTKRITDEVTEELMARGIQAEALHGDLSQAQRSKVMGKFRKGHVSVLVATDVAAR 306
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR--RTVRSLERDVG 170
G+D+ +V+ + +Y+LP D E +VHR GRTGRAGK GTAI F + +R + ++ LER +
Sbjct: 307 GIDVNDVEAVFNYDLPLDEENYVHRIGRTGRAGKSGTAI-SFVTGRRDMQKLKDLERFIK 365
Query: 171 CKFEFVSPPVVEDVLE 186
+ PP V D++E
Sbjct: 366 TNINRMDPPSVADLVE 381
>gi|391869233|gb|EIT78435.1| ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 652
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 94/160 (58%), Gaps = 5/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + ++ KR++L D++ + G T++F +TKR AD
Sbjct: 385 VFLSVGRVGSTSENITQKVEY----VEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADS 440
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S L + A+HGD +Q +RER L FR G+ +LVAT VAARGLDIPNV +I+Y
Sbjct: 441 LSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINY 500
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP D + +VHR GRTGRAG G A F R VR L
Sbjct: 501 DLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDL 540
>gi|381182260|ref|ZP_09891076.1| ATP-dependent RNA helicase DeaD [Listeriaceae bacterium TTU M1-001]
gi|380317854|gb|EIA21157.1| ATP-dependent RNA helicase DeaD [Listeriaceae bacterium TTU M1-001]
Length = 502
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 119/211 (56%), Gaps = 9/211 (4%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ + I K +LS L+ V + IVF +TKR DE+S AL +E +HGD
Sbjct: 215 IEQFFIKVHEKEKFDVLSRLLDVQSPE-LAIVFGRTKRRVDELSRALDMRGYVAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++GK VLVATDVAARGLDI V + +Y++P DPE++VHR GRTGR
Sbjct: 274 LTQAKRMSVLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGV 199
AGKEG AI + +R++E+ + + + PP ++ L + E++ V
Sbjct: 334 AGKEGMAITFVQPREMGYLRTVEQTTKKRMQPLKPPTWDEAFAGQLRIATEKITEI---V 390
Query: 200 HPESVEFFTPTAQRLIEEKGTDALAAALAQL 230
E++ + A L+E+ +AAA+ ++
Sbjct: 391 TEENLADYKAVASELLEKYDATDIAAAMLKM 421
>gi|317132017|ref|YP_004091331.1| DEAD/DEAH box helicase [Ethanoligenens harbinense YUAN-3]
gi|315469996|gb|ADU26600.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
YUAN-3]
Length = 530
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 125/244 (51%), Gaps = 11/244 (4%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TKR DE+ + S E +HGD+ Q+QR+ TL FR G LVATDVAARG
Sbjct: 247 IIFCRTKRGVDELVENMQSRGYIVEGMHGDMGQNQRQNTLKKFRDGNLDFLVATDVAARG 306
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+DI N+ +I+YELP D E++VHR GRTGRA + G A + T + ++ +ER
Sbjct: 307 IDIENISHVINYELPEDAESYVHRIGRTGRANRTGIAYSLVTPREYIILKQIERVTHGHI 366
Query: 174 EFVSPPVVEDVLESSAEQVVATLN-GVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS- 231
+ P VED+ E + V+ + + E F P A L +E +AAAL ++S
Sbjct: 367 KRKEIPTVEDIYEVKYKNVLTKVKEELEKNDFEKFKPLASELDDEYNLVDVAAALLKISF 426
Query: 232 ----GFSRPPSSRSL-INHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 286
F S ++ + G L L +A ++ R ++ FL D +EIG
Sbjct: 427 ENELNFDYASSEKAREVRQSAGETRLFL---NAGRMDKVTPRDILRFLCDNSGFTRNEIG 483
Query: 287 KIHI 290
I I
Sbjct: 484 HIDI 487
>gi|145256950|ref|XP_001401571.1| ATP-dependent RNA helicase ded1 [Aspergillus niger CBS 513.88]
gi|134034089|sp|A2QI25.1|DED1_ASPNC RecName: Full=ATP-dependent RNA helicase ded1
gi|134058481|emb|CAL00690.1| unnamed protein product [Aspergillus niger]
Length = 678
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 94/160 (58%), Gaps = 5/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + ++ KR++L D++ + G T++F +TKR AD
Sbjct: 409 VFLSVGRVGSTSENITQKVEY----VEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADS 464
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S L + A+HGD +Q +RER L FR G+ +LVAT VAARGLDIPNV +I+Y
Sbjct: 465 LSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINY 524
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP D + +VHR GRTGRAG G A F R VR L
Sbjct: 525 DLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDL 564
>gi|27366603|ref|NP_762130.1| cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6]
gi|37676317|ref|NP_936713.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
gi|320158491|ref|YP_004190869.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O]
gi|27358169|gb|AAO07120.1| Cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6]
gi|37200858|dbj|BAC96683.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
gi|319933803|gb|ADV88666.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O]
Length = 641
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 114/187 (60%), Gaps = 4/187 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LVATDV AR
Sbjct: 248 SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++ER
Sbjct: 308 GLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRQGKAILLVRTNQIRMLRTIERVTKSS 367
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDA--LAAALAQ 229
E + P+ + V + +++ A L + ++++ F ++L E D+ LAA L +
Sbjct: 368 MEEIQLPLRDKVAAARLDKLAAELQADIEHKALDKFAELIEKLEERLEIDSSVLAAILLK 427
Query: 230 LSGFSRP 236
RP
Sbjct: 428 RQQGKRP 434
>gi|159125027|gb|EDP50144.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus fumigatus
A1163]
Length = 674
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 94/160 (58%), Gaps = 5/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + ++ KR++L D++ + G T++F +TKR AD
Sbjct: 410 VFLSVGRVGSTSENITQKVEY----VEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADA 465
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S L + A+HGD +Q +RER L FR G+ +LVAT VAARGLDIPNV +I+Y
Sbjct: 466 LSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINY 525
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP D + +VHR GRTGRAG G A F R VR L
Sbjct: 526 DLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVREL 565
>gi|402820563|ref|ZP_10870130.1| hypothetical protein IMCC14465_13640 [alpha proteobacterium
IMCC14465]
gi|402511306|gb|EJW21568.1| hypothetical protein IMCC14465_13640 [alpha proteobacterium
IMCC14465]
Length = 480
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 89/124 (71%), Gaps = 1/124 (0%)
Query: 53 KTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111
+TI+FT+TK AD++ L+ + + A+HG+ SQ+ R+RTL+ FR+G+ +L+ATD+AA
Sbjct: 245 RTIIFTRTKHGADQLVKYLSKQGVTASAIHGNKSQNARQRTLDAFRKGEEHILIATDIAA 304
Query: 112 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 171
RG+DIP+V L+++Y++P PE +VHR GRT RAG+EG AI + +++ +R +ER +
Sbjct: 305 RGIDIPDVSLVVNYDVPTTPEAYVHRIGRTARAGREGRAITLCAPEEQKHLRDIERLIKI 364
Query: 172 KFEF 175
K
Sbjct: 365 KLPI 368
>gi|386821083|ref|ZP_10108299.1| DNA/RNA helicase, superfamily II [Joostella marina DSM 19592]
gi|386426189|gb|EIJ40019.1| DNA/RNA helicase, superfamily II [Joostella marina DSM 19592]
Length = 595
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 100/158 (63%), Gaps = 2/158 (1%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+++F +TKRD +V+ L + ALHGD+SQ+QR+ + FR + +LVATDVAAR
Sbjct: 245 SVIFCRTKRDTQKVAEKLIEDGYNAGALHGDLSQNQRDMVMKSFRSKQIQMLVATDVAAR 304
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+D+ +V +I+Y+LP++ ET+ HRSGRTGRAGK G ++++ T S+ R + ++ER + K
Sbjct: 305 GIDVDDVTHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIVTKSELRKIGAIERIIQQK 364
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTP 209
FE P E++ E + + + + VE + P
Sbjct: 365 FEAKKVPSAEEICEIQLYHLASKIKNTEVNKEVEHYLP 402
>gi|381204134|ref|ZP_09911205.1| ATP-dependent RNA helicase [SAR324 cluster bacterium JCVI-SC
AAA005]
Length = 556
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 165/327 (50%), Gaps = 27/327 (8%)
Query: 45 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 103
I Y + ++F QTKRD DE+ L +EALHGD SQHQR++ + FR + +
Sbjct: 238 ILTYHRPELALIFCQTKRDVDELYRQLHGRGYKAEALHGDYSQHQRDQVMQKFRNHELDL 297
Query: 104 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 163
L+ATD+AARG+D +D++++Y +P +PET+VHR GRTGRAG+EG A++ + R +
Sbjct: 298 LIATDLAARGID-SKLDMVVNYNVPENPETYVHRIGRTGRAGREGLAVMFVSPEDYRQLY 356
Query: 164 SLERDVGCKFEFVSPPVVEDVLESSAE--QVVATLNGVHPESVEFFTPTAQRLIEEKGTD 221
++E+ + + ++ P +++ + Q+ + ES ++ A +L+E
Sbjct: 357 AIEKLIKIRLQYRDLPTRKELKTHHQDFLQMRIEIGTKDSESADYIE-LAAKLLENGTPL 415
Query: 222 ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLS-DVYPT 280
+ AA +++G + P I+ + + + R F+S+ +G ++ DV +
Sbjct: 416 EMLAATLRVAGEALSPQIS--IDRQHELNSENTGAEYGMVRFFLSSGRTIGLMAGDVVRS 473
Query: 281 AAD-------EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD 333
EIGKI ++ DD + ++PE A+ LL +KI+ PA
Sbjct: 474 VTHYTKIPGAEIGKI-LLQDD---FSFVEVPEIWARHLLENLPTFHFRGTKISVKPA--- 526
Query: 334 DGPSSDNYGRFSSRDRFSRGGGSRFSR 360
+ + RF RD F + RF R
Sbjct: 527 --RAREKIARF--RD-FHKNSNQRFRR 548
>gi|343500286|ref|ZP_08738182.1| ATP-dependent RNA helicase DeaD [Vibrio tubiashii ATCC 19109]
gi|418480787|ref|ZP_13049842.1| cold-shock DEAD-box protein A [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342820665|gb|EGU55483.1| ATP-dependent RNA helicase DeaD [Vibrio tubiashii ATCC 19109]
gi|384571547|gb|EIF02078.1| cold-shock DEAD-box protein A [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 648
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 113/187 (60%), Gaps = 4/187 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LVATDV AR
Sbjct: 248 SIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++ER
Sbjct: 308 GLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTIERVTKSS 367
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDA--LAAALAQ 229
E + P + V E+ ++ A L +++E F+ ++L E DA LAA L +
Sbjct: 368 MEEIQLPHRDKVAEARVAKLGAELEADKEHKALEKFSELVEKLQESLELDAATLAAILLK 427
Query: 230 LSGFSRP 236
RP
Sbjct: 428 RQQGKRP 434
>gi|270290190|ref|ZP_06196416.1| ATP-dependent RNA helicase DeaD [Pediococcus acidilactici 7_4]
gi|270281727|gb|EFA27559.1| ATP-dependent RNA helicase DeaD [Pediococcus acidilactici 7_4]
Length = 511
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 118/213 (55%), Gaps = 7/213 (3%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASE 78
E A+ + Y I + K +L+ +I V + +VF +TKR DEV+ L + +
Sbjct: 208 ELTADLVDQYYIRSKEFEKFDMLTRIIDVQSPK-LAVVFGRTKRRVDEVAKGLVARGYNA 266
Query: 79 A-LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
A +HGD++Q +R L+ FR G+ +LVATDVAARGLDI V + +Y++P DPE++VHR
Sbjct: 267 AGIHGDLTQQRRMNILHQFRDGQLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHR 326
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL---ESSAEQVVA 194
GRTGRAG GT++ T+ + +R +ER + + PP E+ AEQ V
Sbjct: 327 IGRTGRAGAHGTSVTFVTNWEMDYLRDVERLTKKRLLPLKPPTEEEAFIGRAVMAEQNVQ 386
Query: 195 TLNGVHPESVEFFTPTAQRLIEEKGTDALAAAL 227
L V V+ F A RL+E+ L AAL
Sbjct: 387 EL--VKKTDVDKFGEQADRLLEQYDARTLVAAL 417
>gi|373111868|ref|ZP_09526104.1| hypothetical protein HMPREF9466_00137 [Fusobacterium necrophorum
subsp. funduliforme 1_1_36S]
gi|419840557|ref|ZP_14363945.1| DEAD/DEAH box helicase [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|371656727|gb|EHO22048.1| hypothetical protein HMPREF9466_00137 [Fusobacterium necrophorum
subsp. funduliforme 1_1_36S]
gi|386907500|gb|EIJ72207.1| DEAD/DEAH box helicase [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
Length = 528
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 109/179 (60%), Gaps = 2/179 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK D +EV L +E LHGDI Q+ RE TL F+ K +LVATDVAARG
Sbjct: 250 IVFCRTKTDVNEVVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKARKINILVATDVAARG 309
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ ++ +I+Y +P + E++VHR GRTGRAGKEGTAI T + R + ++R V +
Sbjct: 310 IDVNDLSHVINYAIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQIQRIVKTEI 369
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALAAALAQLS 231
P V+DV+++ Q+ ++ + E + F AQ L++++ + + A+L +L+
Sbjct: 370 RKEQVPEVKDVIQAKKFQIQKDIDEILLEGEYDKFKKLAQDLLKKEEAENIVASLLKLA 428
>gi|358366063|dbj|GAA82684.1| ATP dependent RNA helicase [Aspergillus kawachii IFO 4308]
Length = 676
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 94/160 (58%), Gaps = 5/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + ++ KR++L D++ + G T++F +TKR AD
Sbjct: 409 VFLSVGRVGSTSENITQKVEY----VEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADS 464
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S L + A+HGD +Q +RER L FR G+ +LVAT VAARGLDIPNV +I+Y
Sbjct: 465 LSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINY 524
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP D + +VHR GRTGRAG G A F R VR L
Sbjct: 525 DLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDL 564
>gi|374581781|ref|ZP_09654875.1| DNA/RNA helicase, superfamily II [Desulfosporosinus youngiae DSM
17734]
gi|374417863|gb|EHQ90298.1| DNA/RNA helicase, superfamily II [Desulfosporosinus youngiae DSM
17734]
Length = 535
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 94/142 (66%), Gaps = 1/142 (0%)
Query: 52 GKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 110
G+ I+F +TKR DE+ ++L + ++ALHGD+SQ QR+R + FR GK +LVATDVA
Sbjct: 247 GQGIIFCRTKRGVDELVVSLEARGYFADALHGDLSQQQRDRVMKRFRDGKTELLVATDVA 306
Query: 111 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 170
ARGLDI NV +I++++P DP ++VHR GRTGR G++G AI + + + R +R +E +
Sbjct: 307 ARGLDINNVTHVINFDIPQDPVSYVHRIGRTGRVGRKGQAITLISPKEYRQLRLIENLIK 366
Query: 171 CKFEFVSPPVVEDVLESSAEQV 192
+ P + D+ E AE +
Sbjct: 367 TRIRRQELPSLADISERQAENL 388
>gi|296332826|ref|ZP_06875286.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305673172|ref|YP_003864844.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296150106|gb|EFG90995.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305411416|gb|ADM36535.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
spizizenii str. W23]
gi|407956155|dbj|BAM49395.1| ATP-dependent RNA helicase [Bacillus subtilis BEST7613]
gi|407963426|dbj|BAM56665.1| ATP-dependent RNA helicase [Bacillus subtilis BEST7003]
Length = 494
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 110/187 (58%), Gaps = 4/187 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLVATDVAARG
Sbjct: 245 IVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARG 304
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++E+ K
Sbjct: 305 LDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKM 364
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ + P +++ LE + V L + ++ F+ A L+E+ DA+ A +
Sbjct: 365 DRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAELLEDH--DAVTVVAAAIKM 422
Query: 233 FSRPPSS 239
++ P +
Sbjct: 423 ATKEPDN 429
>gi|342217228|ref|ZP_08709875.1| type III restriction enzyme, res subunit [Peptoniphilus sp. oral
taxon 375 str. F0436]
gi|341588118|gb|EGS31518.1| type III restriction enzyme, res subunit [Peptoniphilus sp. oral
taxon 375 str. F0436]
Length = 548
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 130/259 (50%), Gaps = 15/259 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDAD--EVSLAL 71
+ + E AE I Y + K IL+ L+ ++ + K+I+F TK+ D EV +A
Sbjct: 205 ILEKKELTAEKIHQYYLELNRNMKTEILNRLLLIH-RPNKSIIFCNTKKMVDSLEVEMAQ 263
Query: 72 TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 131
+ +LHGD+ Q R++ + FR G +L+ATDVAARGLD+ ++DL+ +Y+LP
Sbjct: 264 KGYQVA-SLHGDMRQSSRDQVMKKFRDGSIDLLIATDVAARGLDVSDIDLVFNYDLPQQS 322
Query: 132 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 191
E +VHR GRT RAGK+G + T+ R +E K + +S P +DV + E
Sbjct: 323 EYYVHRIGRTARAGKKGISFTFVTNKDYDKFREIEDYANIKMDKMSLPTKKDVEKEGMES 382
Query: 192 VVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ-LSGFSRPPSSRSLINHEQGWV 250
+ +N + P+A +E+ TD L L Q S + S ++N E V
Sbjct: 383 LYERVN-------KSIVPSAD---QEEYTDLLNRLLGQGHSLYDIGASLLKMVNQEANNV 432
Query: 251 TLQLTRDSAFSRGFMSARS 269
TL F + F +RS
Sbjct: 433 TLVELDKVDFGKKFELSRS 451
>gi|332293226|ref|YP_004431835.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
gi|332171312|gb|AEE20567.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
Length = 644
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 111/172 (64%), Gaps = 2/172 (1%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+++F +TKRD +V+ L + ALHGD+SQ+QR+ + FR + +LVATDVAAR
Sbjct: 244 SVIFCRTKRDTQKVAEQLIEDGYNAGALHGDLSQNQRDLVMKSFRNRQIQMLVATDVAAR 303
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+D+ ++ +++Y+LP++ ET+ HRSGRTGRAGK GT++++ T S+ R ++ LE+ +G K
Sbjct: 304 GIDVDDITHVVNYQLPDEIETYTHRSGRTGRAGKTGTSLVIVTKSEMRKIKQLEKILGKK 363
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHPES-VEFFTPTAQRLIEEKGTDAL 223
FE + P +++ + + ++N + ++ + P + ++++ + L
Sbjct: 364 FEQKTIPDGKEITQVQLFHLANSINTTEINNEIDAYLPEIEEVLKDNTKEEL 415
>gi|16077525|ref|NP_388339.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
subtilis str. 168]
gi|402774703|ref|YP_006628647.1| ATP-dependent RNA helicase [Bacillus subtilis QB928]
gi|430757089|ref|YP_007210799.1| hypothetical protein A7A1_1597 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|1881268|dbj|BAA19295.1| ydbR [Bacillus subtilis]
gi|402479888|gb|AFQ56397.1| ATP-dependent RNA helicase [Bacillus subtilis QB928]
gi|430021609|gb|AGA22215.1| Hypothetical protein YdbR [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 511
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 109/185 (58%), Gaps = 4/185 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLVATDVAARG
Sbjct: 262 IVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARG 321
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++E+ K
Sbjct: 322 LDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKM 381
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ + P +++ LE + V L + ++ F+ A L+E+ DA+ A +
Sbjct: 382 DRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAELLEDH--DAVTVVAAAIKM 439
Query: 233 FSRPP 237
++ P
Sbjct: 440 ATKEP 444
>gi|147840398|emb|CAN63980.1| hypothetical protein VITISV_042304 [Vitis vinifera]
Length = 147
Score = 124 bits (311), Expect = 1e-25, Method: Composition-based stats.
Identities = 60/70 (85%), Positives = 64/70 (91%)
Query: 146 KEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVE 205
K GT I+MFT SQ RTV+SLERDVGCKFE SPPVVE+VLESSAEQVVATLNGVHPESVE
Sbjct: 66 KWGTXIMMFTISQWRTVKSLERDVGCKFELTSPPVVEEVLESSAEQVVATLNGVHPESVE 125
Query: 206 FFTPTAQRLI 215
FFTPTAQ+LI
Sbjct: 126 FFTPTAQKLI 135
>gi|449093157|ref|YP_007425648.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis XF-1]
gi|449027072|gb|AGE62311.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis XF-1]
Length = 474
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 109/185 (58%), Gaps = 4/185 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLVATDVAARG
Sbjct: 225 IVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARG 284
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++E+ K
Sbjct: 285 LDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKM 344
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ + P +++ LE + V L + ++ F+ A L+E+ DA+ A +
Sbjct: 345 DRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAELLEDH--DAVTVVAAAIKM 402
Query: 233 FSRPP 237
++ P
Sbjct: 403 ATKEP 407
>gi|443633956|ref|ZP_21118132.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
gi|443346152|gb|ELS60213.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
Length = 474
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 110/187 (58%), Gaps = 4/187 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLVATDVAARG
Sbjct: 225 IVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARG 284
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++E+ K
Sbjct: 285 LDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKM 344
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ + P +++ LE + V L + ++ F+ A L+E+ DA+ A +
Sbjct: 345 DRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAELLEDH--DAVTVVAAAIKM 402
Query: 233 FSRPPSS 239
++ P +
Sbjct: 403 ATKEPDN 409
>gi|221308280|ref|ZP_03590127.1| hypothetical protein Bsubs1_02593 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312602|ref|ZP_03594407.1| hypothetical protein BsubsN3_02569 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317526|ref|ZP_03598820.1| hypothetical protein BsubsJ_02533 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221321802|ref|ZP_03603096.1| hypothetical protein BsubsS_02604 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|321314132|ref|YP_004206419.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
gi|384174130|ref|YP_005555515.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|428277910|ref|YP_005559645.1| hypothetical protein BSNT_00786 [Bacillus subtilis subsp. natto
BEST195]
gi|452916520|ref|ZP_21965143.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus subtilis MB73/2]
gi|134039178|sp|P96614.2|CSHA_BACSU RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|291482867|dbj|BAI83942.1| hypothetical protein BSNT_00786 [Bacillus subtilis subsp. natto
BEST195]
gi|320020406|gb|ADV95392.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis BSn5]
gi|349593354|gb|AEP89541.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|443906300|emb|CAB12265.2| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
subtilis str. 168]
gi|452114660|gb|EME05059.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus subtilis MB73/2]
Length = 494
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 109/185 (58%), Gaps = 4/185 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLVATDVAARG
Sbjct: 245 IVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARG 304
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++E+ K
Sbjct: 305 LDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKM 364
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ + P +++ LE + V L + ++ F+ A L+E+ DA+ A +
Sbjct: 365 DRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAELLEDH--DAVTVVAAAIKM 422
Query: 233 FSRPP 237
++ P
Sbjct: 423 ATKEP 427
>gi|392531372|ref|ZP_10278509.1| ATP-dependent RNA helicase; cold shock [Carnobacterium
maltaromaticum ATCC 35586]
gi|414082690|ref|YP_006991393.1| DEAD/DEAH box helicase [Carnobacterium maltaromaticum LMA28]
gi|412996269|emb|CCO10078.1| DEAD/DEAH box helicase family protein [Carnobacterium
maltaromaticum LMA28]
Length = 541
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 112/207 (54%), Gaps = 3/207 (1%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I Y + K I++ L+ V TIVF +TKR DE+S L +E +HGD
Sbjct: 214 IDQYYVRCKDFEKFDIMTRLLDVQTPE-LTIVFGRTKRRVDELSKGLEMRGYRAEGIHGD 272
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
+SQ +R L F++G +LVATDVAARGLDI V + +Y++P DPE++VHR GRTGR
Sbjct: 273 LSQQKRMSVLKSFKKGDLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 332
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AGKEG ++ T ++ +R +E K + PP + E + + T V
Sbjct: 333 AGKEGMSVTFITPNEMGYLRVIEDLTKKKMTTLRPPTNAEAFEGQVKAAMETAEELVKSN 392
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQ 229
+E + A +L+E+ T +AAA +
Sbjct: 393 DLERYEKAAAQLLEDYDTTDIAAAFLK 419
>gi|225075811|ref|ZP_03719010.1| hypothetical protein NEIFLAOT_00827 [Neisseria flavescens
NRL30031/H210]
gi|224952844|gb|EEG34053.1| hypothetical protein NEIFLAOT_00827 [Neisseria flavescens
NRL30031/H210]
Length = 300
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 93/148 (62%), Gaps = 2/148 (1%)
Query: 24 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHG 82
++ + I+ A KR +L LI V + IVF +TK+ D+V+ L IA++++HG
Sbjct: 59 NVEQHIIAVDALKKRNLLERLI-VDLHMNQVIVFCKTKQSVDQVTRDLVRRNIAAQSIHG 117
Query: 83 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 142
D SQ R TLN F++G VLVATDVAARGLDI + +I+YELP PE +VHR GRTG
Sbjct: 118 DKSQQSRLETLNAFKEGTLRVLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTG 177
Query: 143 RAGKEGTAILMFTSSQRRTVRSLERDVG 170
RAG +G AI + ++++ S++ G
Sbjct: 178 RAGADGVAISLMDKTEQKMFESIKELTG 205
>gi|159904844|ref|YP_001548506.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
maripaludis C6]
gi|159886337|gb|ABX01274.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
C6]
Length = 546
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 96/146 (65%), Gaps = 1/146 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
++F +TK D DE+S LT A+E LHGD++Q QRE+TL F+ K VLVATDVAARG
Sbjct: 245 LIFCKTKADVDEISSRLTEKGYAAEGLHGDMTQAQREKTLEKFKARKINVLVATDVAARG 304
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+DI ++ +++Y++P +PE++VHR GRTGRAGK+G A+ S+ R + +++ +
Sbjct: 305 IDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKFKYIQKIANTEI 364
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGV 199
P V+D++ + ++V+ + V
Sbjct: 365 RKEEVPDVKDIIGAKKRKIVSGIKEV 390
>gi|418034442|ref|ZP_12672914.1| ATP-dependent RNA helicase (cold shock) [Bacillus subtilis subsp.
subtilis str. SC-8]
gi|351468695|gb|EHA28904.1| ATP-dependent RNA helicase (cold shock) [Bacillus subtilis subsp.
subtilis str. SC-8]
Length = 480
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 109/185 (58%), Gaps = 4/185 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLVATDVAARG
Sbjct: 231 IVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARG 290
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++E+ K
Sbjct: 291 LDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKM 350
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ + P +++ LE + V L + ++ F+ A L+E+ DA+ A +
Sbjct: 351 DRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAELLEDH--DAVTVVAAAIKM 408
Query: 233 FSRPP 237
++ P
Sbjct: 409 ATKEP 413
>gi|340754860|ref|ZP_08691593.1| ATP-dependent RNA helicase [Fusobacterium sp. D12]
gi|421501471|ref|ZP_15948434.1| DEAD/DEAH box helicase [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
gi|313686421|gb|EFS23256.1| ATP-dependent RNA helicase [Fusobacterium sp. D12]
gi|402265834|gb|EJU15289.1| DEAD/DEAH box helicase [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
Length = 528
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 109/179 (60%), Gaps = 2/179 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK D +EV L +E LHGDI Q+ RE TL F+ K +LVATDVAARG
Sbjct: 250 IVFCRTKTDVNEVVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKARKINILVATDVAARG 309
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ ++ +I+Y +P + E++VHR GRTGRAGKEGTAI T + R + ++R V +
Sbjct: 310 IDVNDLSHVINYAIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQIQRIVKTEI 369
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALAAALAQLS 231
P V+DV+++ Q+ ++ + E + F AQ L++++ + + A+L +L+
Sbjct: 370 RKEQVPEVKDVIQAKKFQIQKDIDEILLEGEYDKFKKLAQDLLKKEEAENIVASLLKLA 428
>gi|127511465|ref|YP_001092662.1| DEAD/DEAH box helicase [Shewanella loihica PV-4]
gi|126636760|gb|ABO22403.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
Length = 599
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 122/222 (54%), Gaps = 11/222 (4%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 80
E I+ + + +K L ++ V G I+F +T+ E++ L + AS L
Sbjct: 217 VESIEQRFVQVSQHNKLEALVRVLEVENTEG-IIIFVRTRNSCVELAEKLEARGYASSPL 275
Query: 81 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 140
HGD++Q RER ++ ++GK +L+ATDVAARGLD+ + +I+Y++P D E +VHR GR
Sbjct: 276 HGDMNQQARERAVDQLKRGKLDILIATDVAARGLDVERIGHVINYDIPYDTEAYVHRIGR 335
Query: 141 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP----VVEDVLESSAEQVVATL 196
TGRAG+ G AIL T + R +R++ER + ++ P V E L EQV T+
Sbjct: 336 TGRAGRTGMAILFVTHREMRMLRTIERATKSRISPMNVPSPETVAERRLSRLGEQVSNTI 395
Query: 197 NGVHPESVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 236
+ ES++F +L + E T+ LAAAL + RP
Sbjct: 396 DN---ESLDFMHGAVAQLCQQLEVDTEVLAAALLNMVQQERP 434
>gi|221482484|gb|EEE20832.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1]
Length = 1295
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 111/203 (54%), Gaps = 27/203 (13%)
Query: 40 ILSDLITVYAKGGK-TIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFR 97
+L DLI ++ GK IVF TK DAD ++ A + + LHGDI Q R+ + GFR
Sbjct: 832 LLQDLILAESENGKQAIVFVPTKADADALANAADFERVGASVLHGDIGQETRQAVMEGFR 891
Query: 98 QGK-------------------------FTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+GK + VL+ATDVAARG+D+ +VDL++H +P D +
Sbjct: 892 RGKSPFGELLLSQACFALNASGLPLESRYKVLIATDVAARGIDVDSVDLVLHCGVPTDAD 951
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
T++HRSGRTGRAG+ G ++++ + + + LER G KF F+ P +L+S A
Sbjct: 952 TYIHRSGRTGRAGRAGKSLVLVSPQETADLERLERACGFKFSFIHLPSPNAILKSGAATA 1011
Query: 193 VATLNGVHPESVEFFTPTAQRLI 215
L+ + P + FF P A+ ++
Sbjct: 1012 SRLLDSISPSVLPFFRPAAEDVL 1034
>gi|237841471|ref|XP_002370033.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
gi|211967697|gb|EEB02893.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
Length = 1258
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 111/203 (54%), Gaps = 27/203 (13%)
Query: 40 ILSDLITVYAKGGK-TIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFR 97
+L DLI ++ GK IVF TK DAD ++ A + + LHGDI Q R+ + GFR
Sbjct: 813 LLQDLILAESENGKQAIVFVPTKADADALANAADFERVGASVLHGDIGQETRQAVMEGFR 872
Query: 98 QGK-------------------------FTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+GK + VL+ATDVAARG+D+ +VDL++H +P D +
Sbjct: 873 RGKSPFGELLLSQACFALNASGLPLESRYKVLIATDVAARGIDVDSVDLVLHCGVPTDAD 932
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
T++HRSGRTGRAG+ G ++++ + + + LER G KF F+ P +L+S A
Sbjct: 933 TYIHRSGRTGRAGRAGKSLVLVSPQETADLERLERACGFKFSFIHLPSPNAILKSGAATA 992
Query: 193 VATLNGVHPESVEFFTPTAQRLI 215
L+ + P + FF P A+ ++
Sbjct: 993 SRLLDSISPSVLPFFRPAAEDVL 1015
>gi|221504525|gb|EEE30198.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG]
Length = 1279
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 111/203 (54%), Gaps = 27/203 (13%)
Query: 40 ILSDLITVYAKGGK-TIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFR 97
+L DLI ++ GK IVF TK DAD ++ A + + LHGDI Q R+ + GFR
Sbjct: 816 LLQDLILAESENGKQAIVFVPTKADADALANAADFERVGASVLHGDIGQETRQAVMEGFR 875
Query: 98 QGK-------------------------FTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+GK + VL+ATDVAARG+D+ +VDL++H +P D +
Sbjct: 876 RGKSPFGELLLSQACFALNASSLPLESRYKVLIATDVAARGIDVDSVDLVLHCGVPTDAD 935
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
T++HRSGRTGRAG+ G ++++ + + + LER G KF F+ P +L+S A
Sbjct: 936 TYIHRSGRTGRAGRAGKSLVLVSPQETADLERLERACGFKFSFIHLPSPNAILKSGAATA 995
Query: 193 VATLNGVHPESVEFFTPTAQRLI 215
L+ + P + FF P A+ ++
Sbjct: 996 SRLLDSISPSVLPFFRPAAEDVL 1018
>gi|383767838|ref|YP_005446821.1| ATP-dependent RNA helicase DeaD [Phycisphaera mikurensis NBRC
102666]
gi|381388108|dbj|BAM04924.1| ATP-dependent RNA helicase DeaD [Phycisphaera mikurensis NBRC
102666]
Length = 693
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 97/158 (61%), Gaps = 4/158 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+VF +T+ EV+ L + A+EAL G++ Q QRER + + G+ V+VATDVAAR
Sbjct: 312 VLVFVRTRNACTEVADQLQARGHAAEALSGEVPQRQRERIVESLKDGRIDVVVATDVAAR 371
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+ V +I+Y++P DPE ++HR GRTGRAG+ G AIL T ++R + LER G
Sbjct: 372 GLDVERVGHVINYDMPTDPEAYIHRIGRTGRAGRSGEAILFVTPREKRMLGELERITGQA 431
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGV---HPESVEFF 207
E + PP +D+ + + +A ++ PE+V FF
Sbjct: 432 IEEMQPPSDKDIRDLRVSRFLAAVDAQPEEQPEAVAFF 469
>gi|261379789|ref|ZP_05984362.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
subflava NJ9703]
gi|284797475|gb|EFC52822.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
subflava NJ9703]
Length = 463
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 93/148 (62%), Gaps = 2/148 (1%)
Query: 24 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHG 82
++ + I+ A KR +L LI V + IVF +TK+ D+V+ L IA++++HG
Sbjct: 222 NVEQHIIAVDALKKRNLLERLI-VDLHMNQVIVFCKTKQSVDQVTRDLVRRNIAAQSIHG 280
Query: 83 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 142
D SQ R TLN F++G VLVATDVAARGLDI + +I+YELP PE +VHR GRTG
Sbjct: 281 DKSQQSRLETLNAFKEGTLRVLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTG 340
Query: 143 RAGKEGTAILMFTSSQRRTVRSLERDVG 170
RAG +G AI + ++++ S++ G
Sbjct: 341 RAGADGVAISLMDKTEQKMFESIKELTG 368
>gi|150403372|ref|YP_001330666.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
maripaludis C7]
gi|150034402|gb|ABR66515.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
C7]
Length = 546
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 95/141 (67%), Gaps = 1/141 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
++F +TK D DE+S LT A+E LHGD++Q QRE+TL+ F+ K VLVATDVAARG
Sbjct: 245 LIFCKTKADVDEISSRLTEKGYAAEGLHGDMTQAQREKTLDKFKARKINVLVATDVAARG 304
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+DI ++ +++Y++P +PE++VHR GRTGRAGK+G A+ S+ R + +++ +
Sbjct: 305 IDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKFKYIQKIANTEI 364
Query: 174 EFVSPPVVEDVLESSAEQVVA 194
P V+D++ + ++V+
Sbjct: 365 RKEEVPDVKDIIGAKKRKIVS 385
>gi|255950086|ref|XP_002565810.1| Pc22g19070 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592827|emb|CAP99195.1| Pc22g19070 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 682
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 94/160 (58%), Gaps = 5/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + ++ KR++L D++ + G T++F +TKR AD
Sbjct: 422 IFLSVGRVGSTSENITQKVEY----VEDADKRSVLLDILHTHGSTGLTLIFVETKRMADS 477
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S + + A+HGD +Q +RER L FR G+ +LVAT VAARGLDIPNV +I+Y
Sbjct: 478 LSDFLINQRFPATAIHGDRTQRERERALELFRNGRCPILVATAVAARGLDIPNVTHVINY 537
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP D + +VHR GRTGRAG G A F R VR L
Sbjct: 538 DLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDL 577
>gi|337290483|ref|YP_004629504.1| hypothetical protein CULC22_00872 [Corynebacterium ulcerans
BR-AD22]
gi|384515395|ref|YP_005710487.1| hypothetical protein CULC809_00857 [Corynebacterium ulcerans 809]
gi|397653720|ref|YP_006494403.1| hypothetical protein CULC0102_0969 [Corynebacterium ulcerans 0102]
gi|334696596|gb|AEG81393.1| hypothetical protein CULC809_00857 [Corynebacterium ulcerans 809]
gi|334698789|gb|AEG83585.1| hypothetical protein CULC22_00872 [Corynebacterium ulcerans
BR-AD22]
gi|393402676|dbj|BAM27168.1| hypothetical protein CULC0102_0969 [Corynebacterium ulcerans 0102]
Length = 674
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 93/134 (69%), Gaps = 1/134 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 309 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 368
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER +
Sbjct: 369 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAEL 428
Query: 174 EFVSPPVVEDVLES 187
+ P V++V ES
Sbjct: 429 IEMDLPTVDEVNES 442
>gi|425782977|gb|EKV20854.1| ATP dependent RNA helicase (Dbp1), putative [Penicillium digitatum
Pd1]
Length = 689
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 94/160 (58%), Gaps = 5/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + ++ KR++L D++ + G T++F +TKR AD
Sbjct: 418 IFLSVGRVGSTSENITQKVEY----VEDADKRSVLLDILHTHGSTGLTLIFVETKRMADS 473
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S + + A+HGD +Q +RER L FR G+ +LVAT VAARGLDIPNV +I+Y
Sbjct: 474 LSDFLINQRFPATAIHGDRTQRERERALELFRNGRCPILVATAVAARGLDIPNVTHVINY 533
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP D + +VHR GRTGRAG G A F R VR L
Sbjct: 534 DLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDL 573
>gi|425781809|gb|EKV19753.1| ATP dependent RNA helicase (Dbp1), putative [Penicillium digitatum
PHI26]
Length = 691
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 94/160 (58%), Gaps = 5/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + ++ KR++L D++ + G T++F +TKR AD
Sbjct: 418 IFLSVGRVGSTSENITQKVEY----VEDADKRSVLLDILHTHGSTGLTLIFVETKRMADS 473
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S + + A+HGD +Q +RER L FR G+ +LVAT VAARGLDIPNV +I+Y
Sbjct: 474 LSDFLINQRFPATAIHGDRTQRERERALELFRNGRCPILVATAVAARGLDIPNVTHVINY 533
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP D + +VHR GRTGRAG G A F R VR L
Sbjct: 534 DLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDL 573
>gi|261250797|ref|ZP_05943371.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417953999|ref|ZP_12597040.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260937670|gb|EEX93658.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342816267|gb|EGU51169.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 660
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 113/187 (60%), Gaps = 4/187 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LVATDV AR
Sbjct: 248 SIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++ER
Sbjct: 308 GLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTIERVTKSS 367
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTDA--LAAALAQ 229
E + P + V E+ ++ A L +++E F+ ++L E DA LAA L +
Sbjct: 368 MEEIQLPHRDKVAEARLAKLGAELETEKEHKALEKFSELVEKLQESLELDAATLAAILLK 427
Query: 230 LSGFSRP 236
RP
Sbjct: 428 RQQGKRP 434
>gi|355670672|ref|ZP_09057419.1| hypothetical protein HMPREF9469_00456 [Clostridium citroniae
WAL-17108]
gi|354816109|gb|EHF00698.1| hypothetical protein HMPREF9469_00456 [Clostridium citroniae
WAL-17108]
Length = 569
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 118/208 (56%), Gaps = 5/208 (2%)
Query: 28 YAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQ 86
Y +K ++ L+ +YA +IVF TKR D++ AL +E LHGD+ Q
Sbjct: 221 YYYEVKPKNKVEVMCRLLDMYAPK-LSIVFCNTKRQVDDLVQALQGRGYFAEGLHGDLKQ 279
Query: 87 HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 146
QR+R ++ FR G+ +LVATDVAARG+D+ +V+ + +Y++P D E +VHR GRTGRAG+
Sbjct: 280 IQRDRVMDSFRNGRTEILVATDVAARGIDVGDVEAVFNYDVPQDDEYYVHRIGRTGRAGR 339
Query: 147 EGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES--V 204
EG A + + +R ++R K + P + D+ E E+V+ + + +S
Sbjct: 340 EGKAFSLVVGKEVYKLRDIQRYCKTKIIPQAIPSLNDITEIKVEKVLDQVMDILNDSDLT 399
Query: 205 EFFTPTAQRLIEEKGTDA-LAAALAQLS 231
+ ++L+EE T LAAAL +++
Sbjct: 400 KMVNIIEKKLMEEDYTSLDLAAALLKMN 427
>gi|357055243|ref|ZP_09116317.1| hypothetical protein HMPREF9467_03289 [Clostridium clostridioforme
2_1_49FAA]
gi|355383199|gb|EHG30285.1| hypothetical protein HMPREF9467_03289 [Clostridium clostridioforme
2_1_49FAA]
Length = 569
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 118/208 (56%), Gaps = 5/208 (2%)
Query: 28 YAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQ 86
Y +K ++S L+ +YA +IVF TKR D++ L +E LHGD+ Q
Sbjct: 221 YYYEVKPKNKVEVMSRLLDMYAPK-LSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQ 279
Query: 87 HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 146
QR+R ++ FR G+ +LVATDVAARG+D+ +V+ + +Y++P D E +VHR GRTGRAG+
Sbjct: 280 VQRDRVMDSFRNGRTDILVATDVAARGIDVGDVEAVFNYDIPQDDEYYVHRIGRTGRAGR 339
Query: 147 EGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES--V 204
EG A + + +R ++R K + P + D+ E E+++ + V ++
Sbjct: 340 EGKAFSLVMGKEVYKLRDIQRYCKTKIIPQAIPSLNDITEIKVEKILDQVQEVLNDTDLT 399
Query: 205 EFFTPTAQRLIEEKGTDA-LAAALAQLS 231
+ ++L+EE T LAAAL ++S
Sbjct: 400 KMVNIIEKKLMEEDYTSMDLAAALLKMS 427
>gi|302038923|ref|YP_003799245.1| DEAd-box RNA helicase [Candidatus Nitrospira defluvii]
gi|300606987|emb|CBK43320.1| DEAD-box RNA helicase [Candidatus Nitrospira defluvii]
Length = 576
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/144 (43%), Positives = 95/144 (65%), Gaps = 1/144 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VF +T+ + DEV+ AL +EA+HG +SQ QR+R + FR G+ +LVATDVAARG
Sbjct: 265 LVFCRTRLEVDEVTAALNGRGYRAEAIHGGMSQVQRDRVMQAFRSGQTELLVATDVAARG 324
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDIP+V +I+Y+LP+ E +VHR GRTGRAG+EG A+ + ++R +R++E+ K
Sbjct: 325 LDIPSVSHVINYDLPSSLEVYVHRIGRTGRAGREGAAMTIIEPREQRLLRAVEQHTKAKI 384
Query: 174 EFVSPPVVEDVLESSAEQVVATLN 197
+ P + D+L E+ A++
Sbjct: 385 TVAAVPSLGDLLAKRLERTKASIQ 408
>gi|323499260|ref|ZP_08104237.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326]
gi|323315648|gb|EGA68682.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326]
Length = 646
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 113/187 (60%), Gaps = 4/187 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LVATDV AR
Sbjct: 248 SIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++ER
Sbjct: 308 GLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTIERVTKSS 367
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTDA--LAAALAQ 229
E + P + V E+ ++ A L +++E F+ ++L E DA LAA L +
Sbjct: 368 MEEIQLPHRDKVAEARLAKLGAELETEKEHKALEKFSELVEKLQESLELDAATLAAILLK 427
Query: 230 LSGFSRP 236
RP
Sbjct: 428 RQQGKRP 434
>gi|217976993|ref|YP_002361140.1| DEAD/DEAH box helicase [Methylocella silvestris BL2]
gi|217502369|gb|ACK49778.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
Length = 448
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 98/149 (65%), Gaps = 2/149 (1%)
Query: 20 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASE 78
K A+ ++ + KR IL DL+ AK +TI+FT+TKR AD+V+ L +++
Sbjct: 215 KTADRVEQQVLFVETHRKRDILVDLLA-DAKMARTIIFTRTKRGADKVAQHLEVCGVSAA 273
Query: 79 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS 138
A+HG+ SQ QRER+L FR G+ LVATD+AARG+D+ V +++++LP PE +VHR
Sbjct: 274 AIHGNKSQSQRERSLASFRAGRVRALVATDIAARGIDVDGVTHVVNFDLPEVPEAYVHRI 333
Query: 139 GRTGRAGKEGTAILMFTSSQRRTVRSLER 167
GRT RAG EG AI + ++R +R++ER
Sbjct: 334 GRTARAGAEGVAISLCDGAERDLLRNIER 362
>gi|319780673|ref|YP_004140149.1| DEAD/DEAH box helicase [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317166561|gb|ADV10099.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 624
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 107/181 (59%), Gaps = 8/181 (4%)
Query: 18 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT----S 73
+EK I+ A+S + + +++ Y + +VF T+ + ++ S
Sbjct: 212 EEKQHLDIEYRALSVAQPDRENAIINVLRYY-EAKNALVFCNTRAAVNHLTARFNNRNFS 270
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
++A L G++SQ++R L R G+ V +ATDVAARG+D+PN++L+IH +LP +PET
Sbjct: 271 VVA---LSGELSQNERSHALQAMRDGRAKVCIATDVAARGIDLPNLELVIHADLPTNPET 327
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
+HRSGRTGRAG++G + L+ +S R+ L ++ G K + SPP +DV+ E+++
Sbjct: 328 LLHRSGRTGRAGRKGVSALIVPNSARKRTERLLQNAGLKATWASPPSADDVMRRDDERIL 387
Query: 194 A 194
A
Sbjct: 388 A 388
>gi|160937140|ref|ZP_02084503.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
BAA-613]
gi|158440041|gb|EDP17789.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
BAA-613]
Length = 569
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 118/208 (56%), Gaps = 5/208 (2%)
Query: 28 YAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQ 86
Y +K ++S L+ +YA +IVF TKR D++ L +E LHGD+ Q
Sbjct: 221 YYYEVKPKNKVEVMSRLLDMYAPK-LSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQ 279
Query: 87 HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 146
QR+R ++ FR G+ +LVATDVAARG+D+ +V+ + +Y++P D E +VHR GRTGRAG+
Sbjct: 280 VQRDRVMDSFRNGRTDILVATDVAARGIDVGDVEAVFNYDIPQDDEYYVHRIGRTGRAGR 339
Query: 147 EGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES--V 204
EG A + + +R ++R K + P + D+ E E+++ + V ++
Sbjct: 340 EGKAFSLVMGKEVYKLRDIQRYCKTKIIPQAIPSLNDITEIKVEKILDQVQEVLNDTDLT 399
Query: 205 EFFTPTAQRLIEEKGTDA-LAAALAQLS 231
+ ++L+EE T LAAAL ++S
Sbjct: 400 KMVNIIEKKLMEEDYTSMDLAAALLKMS 427
>gi|149189555|ref|ZP_01867838.1| ATP-dependent RNA helicase DeaD [Vibrio shilonii AK1]
gi|148836534|gb|EDL53488.1| ATP-dependent RNA helicase DeaD [Vibrio shilonii AK1]
Length = 634
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 114/187 (60%), Gaps = 4/187 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +LVATDV AR
Sbjct: 248 SIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++ER
Sbjct: 308 GLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSS 367
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTDA--LAAALAQ 229
E + P+ + V E+ ++ A L +S++ F ++L E DA LAA L +
Sbjct: 368 MEEIQLPLRDKVAEARLVKLGAELEQEKEHKSLDKFAELVEKLQESLEIDAATLAAILLK 427
Query: 230 LSGFSRP 236
RP
Sbjct: 428 RQQGKRP 434
>gi|291514657|emb|CBK63867.1| Superfamily II DNA and RNA helicases [Alistipes shahii WAL 8301]
Length = 690
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 102/179 (56%), Gaps = 2/179 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK DEV+ L + ++E LHGD+SQ QRE+ L FR +LVATDVAARG
Sbjct: 268 IVFCRTKIGVDEVATRLVAQGYSAEGLHGDVSQAQREKILRKFRDKAVNILVATDVAARG 327
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ N+ +I+Y LP D E++VHR GRTGRAG +GTAI + ++ R + RD+
Sbjct: 328 IDVSNLSHVINYSLPQDSESYVHRIGRTGRAGNQGTAITFISGAELRRFNWMMRDIKADI 387
Query: 174 EFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 231
+ + P +D++ ++ L V ES + A L+E D AL +L+
Sbjct: 388 KRETLPSPQDIVAMKRAKIKDDLQEIVANESYGDYADIAAELLESYAPDVALGALLRLA 446
>gi|374335166|ref|YP_005091853.1| ATP-dependent RNA helicase [Oceanimonas sp. GK1]
gi|372984853|gb|AEY01103.1| ATP-dependent RNA helicase [Oceanimonas sp. GK1]
Length = 596
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 97/143 (67%), Gaps = 1/143 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VF +T++DA+E++ ++ A EALHGDI Q RE+ ++ + G+ VLVATDV ARG
Sbjct: 251 LVFVRTRKDAEELAELMSREGHACEALHGDIPQKLREKVVDRLKNGRLNVLVATDVVARG 310
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + +I+Y++P+D E++VHR GRTGRAG+EG AIL T ++R++ +LER
Sbjct: 311 LDVERISHVINYDMPHDNESYVHRIGRTGRAGREGDAILFVTGREKRSLYNLERHTRQPI 370
Query: 174 EFVSPPVVEDVLESSAEQVVATL 196
E +S P +D+ + AE+ A +
Sbjct: 371 EEMSMPSADDINKIRAERFKARI 393
>gi|338708626|ref|YP_004662827.1| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis
subsp. pomaceae ATCC 29192]
gi|336295430|gb|AEI38537.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
Length = 448
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 103/167 (61%), Gaps = 8/167 (4%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYAKGG--KTIVFTQTKRDADEVSLALTSI-IASE 78
AE ++ + + K+ +L+ IT+ + G + +VFT+TK AD V L + I +
Sbjct: 221 AERVEQFGVFVNQQEKQALLT--ITLKSTPGLDRALVFTRTKHGADRVVRHLEAAGIPAA 278
Query: 79 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS 138
A+HG+ SQ QRER LN FR G+ +LVATD+AARG+D+P V + ++ELPN E +VHR
Sbjct: 279 AIHGNKSQPQRERALNAFRNGRLKILVATDIAARGIDVPGVSHVFNFELPNVAEQYVHRI 338
Query: 139 GRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP---VVE 182
GRT RAG++G AI + +R +RS+ER K + + P VVE
Sbjct: 339 GRTARAGRDGQAISFVANDERTYLRSIERLTRVKLQILPLPENFVVE 385
>gi|358389632|gb|EHK27224.1| hypothetical protein TRIVIDRAFT_85827 [Trichoderma virens Gv29-8]
Length = 670
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 106/184 (57%), Gaps = 7/184 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + ++ KR++L D++ +A GG T++F +TKR AD
Sbjct: 400 VFLSVGRVGSTSENITQKVEF----VEDIDKRSVLLDILHTHA-GGLTLIFVETKRMADS 454
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S + + ++HGD +Q +RER L FR G+ +LVAT VAARGLDIPNV +I+Y
Sbjct: 455 LSDFLINQSFPATSIHGDRTQRERERALEFFRNGRCPILVATAVAARGLDIPNVTHVINY 514
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 185
+LP D + +VHR GRTGRAG G A F R VR L D+ + PP +E +
Sbjct: 515 DLPTDVDDYVHRIGRTGRAGNTGIATAFFNRGNRGIVRELI-DLLKEANQEIPPFLEAIA 573
Query: 186 ESSA 189
S+
Sbjct: 574 RESS 577
>gi|85708371|ref|ZP_01039437.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
gi|85689905|gb|EAQ29908.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
Length = 484
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 104/173 (60%), Gaps = 10/173 (5%)
Query: 22 AEGIKLYAISTTATSKRTILSDLIT----VYAKGGKTIVFTQTKRDADEVSLALTSI-IA 76
AE I Y K+++L +++ V + + ++FT+TK AD V L+ I
Sbjct: 217 AERIDQYLFMVQQDEKQSLLELILSGRHKVPGEFERILIFTRTKHGADRVVKKLSRAGIP 276
Query: 77 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 136
+ A+HG+ SQ QR+R L+ FR+GK +LVATDVAARG+DIP V +++YELPN PE +VH
Sbjct: 277 ANAIHGNKSQPQRQRALDEFRRGKTMILVATDVAARGIDIPGVSHVLNYELPNVPEQYVH 336
Query: 137 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP-----VVEDV 184
R GRT RAGK+G AI +R ++ + + G + + ++ P VVE V
Sbjct: 337 RIGRTARAGKDGVAIAFCAEDERAYLKDIRKTTGAELDRLNLPENFRAVVEGV 389
>gi|241760372|ref|ZP_04758467.1| dead/deah box helicase [Neisseria flavescens SK114]
gi|241319250|gb|EER55728.1| dead/deah box helicase [Neisseria flavescens SK114]
Length = 487
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 94/148 (63%), Gaps = 2/148 (1%)
Query: 24 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHG 82
++ + I+ A KR++L LI V + IVF +TK+ D+V+ L IA++++HG
Sbjct: 246 NVEQHIIAVDALKKRSLLERLI-VDLHMNQVIVFCKTKQSVDQVTRDLVRRNIAAQSIHG 304
Query: 83 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 142
D SQ R TLN F++G VLVATDVAARGLDI + +I+YELP PE +VHR GRTG
Sbjct: 305 DKSQQSRLETLNAFKEGTLRVLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTG 364
Query: 143 RAGKEGTAILMFTSSQRRTVRSLERDVG 170
RAG +G AI + ++++ +++ G
Sbjct: 365 RAGADGVAISLMDKTEQKMFEAIKELTG 392
>gi|365852717|ref|ZP_09393074.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
parafarraginis F0439]
gi|363714293|gb|EHL97826.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
parafarraginis F0439]
Length = 503
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 108/183 (59%), Gaps = 7/183 (3%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
TIVF +TKR DEVS L + + LHGD++Q +R + +N F+QGK +LVATDVAAR
Sbjct: 242 TIVFCRTKRRVDEVSKGLEARGYKAAGLHGDLTQARRTQIMNEFKQGKIDILVATDVAAR 301
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+DI V + +Y++P DP+ +VHR GRTGRAGK G +I T ++ + +E+ +
Sbjct: 302 GIDISGVTHVYNYDIPQDPDGYVHRVGRTGRAGKHGVSITFTTPNEMDYLHEIEKLTKVR 361
Query: 173 FEFVSPPVVEDVLE---SSAEQVVATLNGVHPESVEFFTPTAQRLIEE-KGTDALAAALA 228
+ PP + S+AE + L + + E + A +L+EE + TD +AA L
Sbjct: 362 MLPLKPPTEHEAFVGQLSNAESDIGEL--IKKTNTEKYEEMADKLLEEYEATDLVAALLN 419
Query: 229 QLS 231
++
Sbjct: 420 DVT 422
>gi|367037389|ref|XP_003649075.1| hypothetical protein THITE_2107255 [Thielavia terrestris NRRL 8126]
gi|346996336|gb|AEO62739.1| hypothetical protein THITE_2107255 [Thielavia terrestris NRRL 8126]
Length = 666
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 96/160 (60%), Gaps = 6/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + I+ KR++L D++ +A GG T++F +TKR AD
Sbjct: 406 VFLSVGRVGSTSENITQKIEY----VEDIDKRSVLLDILHTHA-GGLTLIFVETKRMADS 460
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S + + ++HGD +Q +RER L FR GK +LVAT VAARGLDIPNV +I+Y
Sbjct: 461 LSDFLINQNFPATSIHGDRTQRERERALELFRNGKCPILVATAVAARGLDIPNVTHVINY 520
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP D + +VHR GRTGRAG G A F R VR L
Sbjct: 521 DLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGIVREL 560
>gi|297584103|ref|YP_003699883.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
selenitireducens MLS10]
gi|297142560|gb|ADH99317.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens
MLS10]
Length = 528
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 110/185 (59%), Gaps = 6/185 (3%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK+ E++ AL + ++ LHGD++Q QR+ + FR L+ATDVAARG
Sbjct: 243 IIFCRTKKGVSELAEALQARGYRADGLHGDLTQSQRDSVMKKFRDSSIDFLIATDVAARG 302
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ NV +++Y++P DPE++VHR GRTGRAG+EG A+ + T + + +RS+E ++ K
Sbjct: 303 IDVQNVTHVVNYDIPQDPESYVHRIGRTGRAGREGIALTLVTPREMKHLRSIENEIKMKI 362
Query: 174 EFVSPPVVEDVLESSAE----QVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 229
+ P VE+V+E + QV+ + E V + L++ + + AL +
Sbjct: 363 PSQNLPSVEEVIEKQQDVWKSQVIDMIEN-DDEGVSHYDAIVTDLLDHYQPEKVVTALMK 421
Query: 230 LSGFS 234
L+ +S
Sbjct: 422 LAFYS 426
>gi|374600649|ref|ZP_09673651.1| DEAD/DEAH box helicase domain protein [Myroides odoratus DSM 2801]
gi|423325748|ref|ZP_17303588.1| hypothetical protein HMPREF9716_02945 [Myroides odoratimimus CIP
103059]
gi|373912119|gb|EHQ43968.1| DEAD/DEAH box helicase domain protein [Myroides odoratus DSM 2801]
gi|404605468|gb|EKB05065.1| hypothetical protein HMPREF9716_02945 [Myroides odoratimimus CIP
103059]
Length = 637
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+++F +TKRD ++ L + ALHGD+SQ QR+ + FR + +LVATDVAAR
Sbjct: 245 SVIFCRTKRDTQAIAEKLIEDGYNAAALHGDLSQAQRDSVMKAFRGKQIQMLVATDVAAR 304
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+D+ ++ +++Y+LP++ ET+ HRSGRTGRAGK G ++++ T S+ R + +ER + K
Sbjct: 305 GIDVDDITHVVNYQLPDEIETYTHRSGRTGRAGKSGVSMVIITKSEARKISQIERIMKTK 364
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHPES-VEFFTPTAQRLIEEKGTDAL 223
FE P ++ E + + V S ++ F P+ L+E+ T+ L
Sbjct: 365 FEEKPIPSGIEICEIQLYHIANRIKNVAVSSEIDTFLPSIMELLEDLTTEEL 416
>gi|381188482|ref|ZP_09896043.1| cold-shock DEAD-box protein A [Flavobacterium frigoris PS1]
gi|379649459|gb|EIA08033.1| cold-shock DEAD-box protein A [Flavobacterium frigoris PS1]
Length = 641
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 110/184 (59%), Gaps = 3/184 (1%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
++VF +TKRD V+ L ++ ALHGD+SQ QR+ + FR + +LVATDVAAR
Sbjct: 245 SVVFCRTKRDTQAVAEKLVEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQMLVATDVAAR 304
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+D+ N+ +++Y+LP++ ET+ HRSGRTGRAGK GT+I++ T S+ R + S+ER + K
Sbjct: 305 GIDVDNITHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISSIERIIKQK 364
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALAAALAQLS 231
FE + P ++ E + + V + ++ + P ++E + L + +
Sbjct: 365 FEEKTIPSGIEICEIQLLHLANKIKDVEVDHEIDNYLPAINNVLEALSKEELIKKMVSVE 424
Query: 232 GFSR 235
F+R
Sbjct: 425 -FNR 427
>gi|159489124|ref|XP_001702547.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280569|gb|EDP06326.1| predicted protein [Chlamydomonas reinhardtii]
Length = 600
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 103/169 (60%), Gaps = 10/169 (5%)
Query: 1 MLNYFVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT---VYAKGGKTIVF 57
+ NY +F +VG+ + + + I+ T K+ L DLI+ V + G T+VF
Sbjct: 354 LANY--VFLTVGRVGSSTDLIVQHIEY----VTPEEKQNTLLDLISTVEVSRRQGLTLVF 407
Query: 58 TQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 116
+TKR ADE+ LT + + + ++HGD SQ QRE L F+ GK V+VATDVAARGLDI
Sbjct: 408 VETKRGADELERILTRNQLPATSIHGDRSQEQREMALRSFKSGKTPVMVATDVAARGLDI 467
Query: 117 PNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
P+V +I+Y+LP D + +VHR GRTGRAG +G A FT S RSL
Sbjct: 468 PHVTHVINYDLPKDIDDYVHRIGRTGRAGHKGLATAFFTDSDAPLARSL 516
>gi|383785235|ref|YP_005469805.1| ATP-dependent RNA helicase [Leptospirillum ferrooxidans C2-3]
gi|383084148|dbj|BAM07675.1| putative ATP-dependent RNA helicase [Leptospirillum ferrooxidans
C2-3]
Length = 467
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/134 (50%), Positives = 92/134 (68%), Gaps = 4/134 (2%)
Query: 38 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGF 96
+TIL +V G+TIVFT+TKR A+E+S++L+ +++ALHGD SQH R R L F
Sbjct: 260 KTILD---SVKNHTGQTIVFTRTKRGAEELSISLSGEGYSTDALHGDKSQHVRNRVLAKF 316
Query: 97 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 156
R+G +LVATDVAARGLDI + +I+Y+LP E +VHR GRTGRAG+ G AI +
Sbjct: 317 RKGDLKILVATDVAARGLDIEGITHVINYDLPQTAEDYVHRIGRTGRAGRTGKAISFYHP 376
Query: 157 SQRRTVRSLERDVG 170
+ T+RS+ER G
Sbjct: 377 ADTDTMRSIERMTG 390
>gi|357026262|ref|ZP_09088366.1| DEAD/DEAH helicase [Mesorhizobium amorphae CCNWGS0123]
gi|355541877|gb|EHH11049.1| DEAD/DEAH helicase [Mesorhizobium amorphae CCNWGS0123]
Length = 621
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 108/181 (59%), Gaps = 8/181 (4%)
Query: 18 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT----S 73
+EK I+ A++ + + +++ Y + +VF T+ + ++ S
Sbjct: 212 EEKQHLDIEYRALNVAQADRENAIINVLRYY-EAKNALVFCNTRAAVNHLTARFNNRNFS 270
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
++A L G++SQ++R L R G+ V +ATDVAARG+D+PN++L+IH +LP +PET
Sbjct: 271 VVA---LSGELSQNERSHALQAMRDGRAKVCIATDVAARGIDLPNLELVIHADLPTNPET 327
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
+HRSGRTGRAG++G + L+ +S R+ L ++ G K + SPP +DV++ E+++
Sbjct: 328 LLHRSGRTGRAGRKGVSALIVPNSARKRTERLLQNAGLKATWASPPSADDVIQRDDERIL 387
Query: 194 A 194
A
Sbjct: 388 A 388
>gi|315917704|ref|ZP_07913944.1| ATP-dependent RNA helicase [Fusobacterium gonidiaformans ATCC
25563]
gi|313691579|gb|EFS28414.1| ATP-dependent RNA helicase [Fusobacterium gonidiaformans ATCC
25563]
Length = 528
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 109/179 (60%), Gaps = 2/179 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK D +EV L +E LHGDI Q+ RE TL F+ K +LVATDVAARG
Sbjct: 250 IVFCRTKTDVNEVVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKAKKINILVATDVAARG 309
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ ++ +I+Y +P + E++VHR GRTGRAGKEGTAI T + R + +++ V +
Sbjct: 310 IDVNDLSHVINYAIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQIQKIVKTEI 369
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALAAALAQLS 231
P V+DV+++ Q+ ++ + E + F AQ L++++ + + A+L +L+
Sbjct: 370 RKEEVPEVKDVIQAKKFQIQKDIDEILGEGEYDKFKKLAQDLLKKEEAENIVASLLKLA 428
>gi|336312904|ref|ZP_08567849.1| cold-shock DEAD-box protein A [Shewanella sp. HN-41]
gi|335863516|gb|EGM68660.1| cold-shock DEAD-box protein A [Shewanella sp. HN-41]
Length = 631
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 118/222 (53%), Gaps = 12/222 (5%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 80
E I+ + + +K L ++ V G I+F +T+ E++ L + AS L
Sbjct: 216 VESIEQRFVQVSQHNKLEALVRVLEVENTEG-IIIFVRTRNSCVELAEKLEARGYASSPL 274
Query: 81 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 140
HGD++Q RER + ++GK +L+ATDVAARGLD+ + +++Y++P D E +VHR GR
Sbjct: 275 HGDMNQQARERAVEQLKRGKLDILIATDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGR 334
Query: 141 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATL 196
TGRAG+ G AIL TS + R +R++ER + + P E V E EQ+ T+
Sbjct: 335 TGRAGRTGMAILFVTSREMRMLRTIERSTNSRISPMKIPSPETVAERRLSRLGEQLAETM 394
Query: 197 NGVHPESVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 236
N ++F +L + E TD LAAAL RP
Sbjct: 395 NT----DLDFMKDAVAQLCQQLEVDTDLLAAALLHQVQQERP 432
>gi|394994548|ref|ZP_10387262.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. 916]
gi|393804648|gb|EJD66053.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. 916]
Length = 494
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 109/187 (58%), Gaps = 4/187 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLVATDVAARG
Sbjct: 245 IVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARG 304
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++E+ K
Sbjct: 305 LDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKM 364
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ + P +++ LE + V L + ++ F+ A L+E+ DA+ +
Sbjct: 365 DRMKEPTLDEALEGQQQVTVDRLRTAISENNLNFYMTAAAELLEDH--DAVTVVAPAIKM 422
Query: 233 FSRPPSS 239
++ P S
Sbjct: 423 ATKEPDS 429
>gi|358392270|gb|EHK41674.1| hypothetical protein TRIATDRAFT_173488, partial [Trichoderma
atroviride IMI 206040]
Length = 681
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 106/184 (57%), Gaps = 7/184 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + ++ KR++L D++ +A GG T++F +TKR AD
Sbjct: 408 VFLSVGRVGSTSENITQKVEF----VEDIDKRSVLLDILHTHA-GGLTLIFVETKRMADS 462
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S + + ++HGD +Q +RER L FR G+ +LVAT VAARGLDIPNV +++Y
Sbjct: 463 LSDFLINQSFPATSIHGDRTQRERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNY 522
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 185
+LP D + +VHR GRTGRAG G A F R VR L D+ + PP +E +
Sbjct: 523 DLPTDVDDYVHRIGRTGRAGNTGIATAFFNRGNRGIVREL-LDLLKEANQEVPPFLEAIA 581
Query: 186 ESSA 189
S+
Sbjct: 582 RESS 585
>gi|268318337|ref|YP_003292056.1| DEAD/DEAH box helicase [Rhodothermus marinus DSM 4252]
gi|262335871|gb|ACY49668.1| DEAD/DEAH box helicase domain protein [Rhodothermus marinus DSM
4252]
Length = 505
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 101/172 (58%), Gaps = 8/172 (4%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F TKRD + + L + ++A+ GD+ Q QRER ++ R+G+ +LVATDVAARG
Sbjct: 284 IIFANTKRDVEYLGQFLKNYGYNADAITGDLPQKQRERIMDRLRKGQLRLLVATDVAARG 343
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+DI ++ + Y++P DPE +VHRSGRTGR GKEGT I++ T + +R++ R
Sbjct: 344 IDISDLSHVFMYDVPQDPEYYVHRSGRTGRVGKEGTTIVLVTPLEEARLRAIARQYDIPL 403
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPESVEF-------FTPTAQRLIEEK 218
E + P E V E AE+ VA L + E+ F P ++L +E+
Sbjct: 404 EKGTLPTPETVAERVAERAVALLEDRYRETTSLDRERIARFVPLVEQLAQEE 455
>gi|74625309|sp|Q9P6U9.1|DED1_NEUCR RecName: Full=ATP-dependent RNA helicase ded-1
gi|7635831|emb|CAB88635.1| probable ATP-dependent RNA helicase DED1 [Neurospora crassa]
Length = 688
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 96/160 (60%), Gaps = 6/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + ++ KR++L D++ +A GG T++F +TKR AD
Sbjct: 414 IFLSVGRVGSTSENITQKVEY----VEDIDKRSVLLDILHTHA-GGLTLIFVETKRMADS 468
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S + + ++HGD +Q +RER L FR G+ +LVAT VAARGLDIPNV +I+Y
Sbjct: 469 LSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAARGLDIPNVTHVINY 528
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP D + +VHR GRTGRAG G A F R VR L
Sbjct: 529 DLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVREL 568
>gi|336472551|gb|EGO60711.1| hypothetical protein NEUTE1DRAFT_76089 [Neurospora tetrasperma FGSC
2508]
gi|350294217|gb|EGZ75302.1| DEAD-domain-containing protein [Neurospora tetrasperma FGSC 2509]
Length = 693
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 96/160 (60%), Gaps = 6/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + ++ KR++L D++ +A GG T++F +TKR AD
Sbjct: 417 IFLSVGRVGSTSENITQKVEY----VEDIDKRSVLLDILHTHA-GGLTLIFVETKRMADS 471
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S + + ++HGD +Q +RER L FR G+ +LVAT VAARGLDIPNV +I+Y
Sbjct: 472 LSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAARGLDIPNVTHVINY 531
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP D + +VHR GRTGRAG G A F R VR L
Sbjct: 532 DLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVREL 571
>gi|347536342|ref|YP_004843767.1| putative ATP-dependent RNA helicase [Flavobacterium branchiophilum
FL-15]
gi|345529500|emb|CCB69530.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family
[Flavobacterium branchiophilum FL-15]
Length = 629
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 89/127 (70%), Gaps = 1/127 (0%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
++VF +TKRD +V+ L + ALHGD+SQ QR+ + FR + +LVATDVAAR
Sbjct: 245 SVVFCRTKRDTQQVAEKLIEDGYNAAALHGDLSQAQRDSVMKSFRGRQIQMLVATDVAAR 304
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+D+ NV +++Y+LP++ ET+ HRSGRTGRAGK GT+I++ T S+ R + S+ER + K
Sbjct: 305 GIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKIASIERIIKQK 364
Query: 173 FEFVSPP 179
FE S P
Sbjct: 365 FEEKSIP 371
>gi|237807374|ref|YP_002891814.1| DEAD/DEAH box helicase [Tolumonas auensis DSM 9187]
gi|237499635|gb|ACQ92228.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
Length = 642
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 111/189 (58%), Gaps = 9/189 (4%)
Query: 55 IVFTQTKRDADEVSLALTSIIAS-EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VF +TK A+E++ L++ S EALHGDI Q RERT+ + G+ +L+ATDVAARG
Sbjct: 251 LVFVRTKTAAEELTSKLSARGHSCEALHGDIPQKLRERTVEKLKAGQIDILIATDVAARG 310
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + +++Y++P D E++VHR GRTGRAG+ G AIL +RR +R +E+
Sbjct: 311 LDVERITHVVNYDIPYDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLRMIEQATRQPI 370
Query: 174 EFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA--LAAAL 227
E + P +D+ LE Q+ TL+ E ++ F +E++ TD L AAL
Sbjct: 371 EPMQMPTAKDINKHRLERFKLQIRETLDS--EEDLQPFQQIINEFLEDESTDPLDLCAAL 428
Query: 228 AQLSGFSRP 236
A++ P
Sbjct: 429 AKMVQGDEP 437
>gi|108800931|ref|YP_641128.1| DEAD/DEAH box helicase [Mycobacterium sp. MCS]
gi|119870071|ref|YP_940023.1| DEAD/DEAH box helicase [Mycobacterium sp. KMS]
gi|126436556|ref|YP_001072247.1| DEAD/DEAH box helicase [Mycobacterium sp. JLS]
gi|108771350|gb|ABG10072.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. MCS]
gi|119696160|gb|ABL93233.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. KMS]
gi|126236356|gb|ABN99756.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. JLS]
Length = 557
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 123/215 (57%), Gaps = 13/215 (6%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 80
AE I I + K L+ L+ +G IVF +TK+ +EV+ L + A+ A+
Sbjct: 223 AENITQRYIQVSYPRKMDALTRLLET-EQGDGMIVFVRTKQATEEVAEKLRARGFAAAAI 281
Query: 81 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 140
+GDI Q RERT++ + G +LVATDVAARGLD+ + ++++++P+DPE++VHR GR
Sbjct: 282 NGDIPQAVRERTISQLKDGSIDILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGR 341
Query: 141 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGV 199
TGRAG+ GTA+L T +R + S+ER K + P VEDV E+ ++ +
Sbjct: 342 TGRAGRSGTALLFVTPRERHLLNSIERVTRQKLVEIQLPSVEDVNAQRVEKFRDSIGEAL 401
Query: 200 HPESVEFFTPTAQRLIEEKGTDA------LAAALA 228
+ ++ F +RLIE+ D +AAALA
Sbjct: 402 NAPGIDLF----RRLIEDYERDNNVPLADIAAALA 432
>gi|313887901|ref|ZP_07821580.1| DEAD-box ATP-dependent RNA helicase CshA [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312846067|gb|EFR33449.1| DEAD-box ATP-dependent RNA helicase CshA [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 544
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 110/207 (53%), Gaps = 4/207 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
+ + E AE I+ + + K IL+ LI ++ K K+I+F TKR + + L +
Sbjct: 204 IIEKKELTAEKIEQFYLELNRNMKTEILNRLILIH-KPKKSIIFCNTKRMVEALELEIAQ 262
Query: 74 I-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
++LHGD+ Q R+ + FR G VL+ATDVAARGLD+ ++DL+ +Y+LP E
Sbjct: 263 RGYKVDSLHGDMRQSSRDNVMKKFRNGTIDVLIATDVAARGLDVSDIDLVFNYDLPQQAE 322
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+VHR GRT RAGK+G + TS + +E+ K E + P DV + S + +
Sbjct: 323 YYVHRIGRTARAGKKGASFTFVTSRDYPKFKEIEKYANTKMEKMKLPTKSDVEKESLDNL 382
Query: 193 VATLNG--VHPESVEFFTPTAQRLIEE 217
+N + E E +T +L+ E
Sbjct: 383 FDKVNKNIIRAEDQENYTEVLNKLLAE 409
>gi|322696164|gb|EFY87960.1| ATP-dependent RNA helicase DED1 [Metarhizium acridum CQMa 102]
Length = 666
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 96/160 (60%), Gaps = 6/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + ++ KR++L D++ +A GG T++F +TKR AD
Sbjct: 402 VFLSVGRVGSTSENITQKVEF----VEDIDKRSVLLDILHTHA-GGLTLIFVETKRMADS 456
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S + + ++HGD +Q +RER L FR G+ +LVAT VAARGLDIPNV +I+Y
Sbjct: 457 LSDFLINQSFPATSIHGDRTQRERERALEFFRNGRCPILVATAVAARGLDIPNVTHVINY 516
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP D + +VHR GRTGRAG G A F R VR L
Sbjct: 517 DLPTDVDDYVHRIGRTGRAGNTGIATAFFNRGNRGIVREL 556
>gi|336266888|ref|XP_003348211.1| hypothetical protein SMAC_04056 [Sordaria macrospora k-hell]
Length = 648
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 96/160 (60%), Gaps = 6/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + ++ KR++L D++ +A GG T++F +TKR AD
Sbjct: 439 IFLSVGRVGSTSENITQKVEY----VEDVDKRSVLLDILHTHA-GGLTLIFVETKRMADS 493
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S + + ++HGD +Q +RER L FR G+ +LVAT VAARGLDIPNV +I+Y
Sbjct: 494 LSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAARGLDIPNVTHVINY 553
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP D + +VHR GRTGRAG G A F R VR L
Sbjct: 554 DLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVREL 593
>gi|154252927|ref|YP_001413751.1| DEAD/DEAH box helicase [Parvibaculum lavamentivorans DS-1]
gi|154156877|gb|ABS64094.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans
DS-1]
Length = 448
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 101/157 (64%), Gaps = 8/157 (5%)
Query: 37 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNG 95
KR +L+ L+ ++ + IVFT+TK A+ VS L S + SEA+HG+ SQ R+R L+
Sbjct: 234 KRELLAKLLD-NSELSRVIVFTRTKHCANRVSEQLDKSGVLSEAIHGNKSQGARQRALDM 292
Query: 96 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 155
FR GK VLVATD+AARG+D+ ++ +I+YELPN+PE++VHR GRT RAGK G A+
Sbjct: 293 FRNGKARVLVATDIAARGIDVSDITHVINYELPNEPESYVHRIGRTARAGKSGIALSFCD 352
Query: 156 SSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+S+R +RS+E+ P V D E EQV
Sbjct: 353 ASERSHLRSIEKLTK------RPLTVMDTTEWLGEQV 383
>gi|325280019|ref|YP_004252561.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
splanchnicus DSM 20712]
gi|324311828|gb|ADY32381.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
20712]
Length = 594
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 96/146 (65%), Gaps = 5/146 (3%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+FT+TK DA E++ L I +ALHGD+SQ QR+ ++ FR + VLVATDVAARG
Sbjct: 246 IIFTRTKMDAREIARKLQKDGIDCDALHGDLSQAQRDDVMDRFRAKRLKVLVATDVAARG 305
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ N+ +I+Y LP D E++ HRSGRTGRAG+EG ++ + S ++ +R +E + KF
Sbjct: 306 LDVDNLTHVINYNLPEDVESYTHRSGRTGRAGREGISVAIINSKEKGKLRRIENILKKKF 365
Query: 174 EFVSPPVVEDV----LESSAEQVVAT 195
++ P E+V L A++++ T
Sbjct: 366 QYKEVPGGEEVCRAQLSYYADKILMT 391
>gi|149372587|ref|ZP_01891699.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[unidentified eubacterium SCB49]
gi|149354630|gb|EDM43194.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[unidentified eubacterium SCB49]
Length = 626
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 133/253 (52%), Gaps = 21/253 (8%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
++VF +TKRD +V+ L ++ A+HGD+SQ+QR+ + FR + ++VATDVAAR
Sbjct: 245 SVVFCRTKRDTQKVAEQLIQDGYSAGAIHGDLSQNQRDIVMKQFRSRQIQMMVATDVAAR 304
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+D+ N+ +I+Y+LP++ ET+ HRSGRTGRAG +G +I++ + S+ R +RS+E+ + K
Sbjct: 305 GIDVDNITHVINYQLPDEVETYTHRSGRTGRAGNQGISIVIVSKSEVRKIRSIEKKIQKK 364
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVH-PESVEFFTPTAQRLIEEKGTDALAAAL--AQ 229
FE P ++ E + + + +E + P +E+ + L +
Sbjct: 365 FEVKEVPSGMEICEKQLMHLANNIKDTEINDDIEAYLPAINESLEDFSKEELIKKFFSVE 424
Query: 230 LSGFSRPPSSRSLIN----HEQGWVTLQLTRDSAFSRGFMSA--------RSVMGFLSDV 277
+ F + IN HE+ + D+ +R F++ S+ L +V
Sbjct: 425 FTRFYNYYNKAKDINVKPGHEKDY-----RDDTGSTRFFLNVGEKDDFNWMSLKDLLKEV 479
Query: 278 YPTAADEIGKIHI 290
D++ K+ +
Sbjct: 480 LNLGKDDVYKVDV 492
>gi|25027815|ref|NP_737869.1| cold shock DEAD-box protein A [Corynebacterium efficiens YS-314]
gi|259506205|ref|ZP_05749107.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
gi|23493098|dbj|BAC18069.1| putative cold shock DEAD-box protein A [Corynebacterium efficiens
YS-314]
gi|259166182|gb|EEW50736.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
Length = 736
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 92/133 (69%), Gaps = 1/133 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 348 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 407
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + +++Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER
Sbjct: 408 LDVERISHVLNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERATNAPL 467
Query: 174 EFVSPPVVEDVLE 186
+ P V++V E
Sbjct: 468 VEMELPTVDEVNE 480
>gi|89094261|ref|ZP_01167203.1| DEAD/DEAH box helicase-like [Neptuniibacter caesariensis]
gi|89081516|gb|EAR60746.1| DEAD/DEAH box helicase-like [Neptuniibacter caesariensis]
Length = 592
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 114/183 (62%), Gaps = 10/183 (5%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VF +TK E++ L++ A EAL+GDISQ+ RERT++ ++G+ +L+ATDV ARG
Sbjct: 250 LVFVRTKSATVELAEKLSARGYACEALNGDISQNLRERTIDKLKRGQIDILIATDVVARG 309
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + +++Y++P D E+++HR GRTGRAG+EG AIL + ++R ++S+ER K
Sbjct: 310 LDVERISHVLNYDIPYDTESYIHRIGRTGRAGREGEAILFVSPREQRMLKSIERATRQKI 369
Query: 174 EFVSPPVVEDVLESSAEQVV----ATLNGVHPESVEFFTPTAQRLIEEKGTD--ALAAAL 227
E + P +D+ E ++ V T++G + ++FF +E D +A+AL
Sbjct: 370 ESMQLPSTDDINEKRVQRFVDRISQTIDG---QDLDFFRNLLTEYQQEHDADPIVIASAL 426
Query: 228 AQL 230
A L
Sbjct: 427 AHL 429
>gi|452993077|emb|CCQ95421.1| DEAD/DEAH box helicase domain protein [Clostridium ultunense Esp]
Length = 569
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 116/209 (55%), Gaps = 4/209 (1%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
++ Y K ILS LI +Y +IVF TK+ DE+++ L + LHGD
Sbjct: 258 VEQYYFELKEHMKTEILSRLIDIY-NPKLSIVFCNTKKKVDELTIELQGRGYFVDGLHGD 316
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
+ Q QR+R ++ FR G +LVATDVAARGLD+ +VD++ +Y++P D E +VHR GRT R
Sbjct: 317 LKQSQRDRVMSKFRTGNIDILVATDVAARGLDVDDVDIVFNYDIPQDEEYYVHRIGRTAR 376
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPE 202
AG+EG A+ R ++ +ER K P ++D+ E ++ ++ + + +
Sbjct: 377 AGREGIALSFVVGRDRHRIKDIERYTKTKIVRKDLPTLKDMEERQSDILIEKIKDEIDKG 436
Query: 203 SVEFFTPTAQRLIEEKGTD-ALAAALAQL 230
++ + +++EE T +AAAL +
Sbjct: 437 QLDRYEKMLNQILEEDYTSFDIAAALLKF 465
>gi|407475055|ref|YP_006789455.1| DEAD/DEAH box helicase [Clostridium acidurici 9a]
gi|407051563|gb|AFS79608.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium acidurici 9a]
Length = 526
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 132/249 (53%), Gaps = 8/249 (3%)
Query: 48 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 106
Y + I+F +TK+ DE+ L E +HGD++Q R TL F++G LVA
Sbjct: 240 YDEPSSAIIFCKTKKGVDELVEGLQVRGYNVEGMHGDMTQDHRMNTLRKFKEGNLEFLVA 299
Query: 107 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 166
TDVAARG+DI ++ + +YELP D +++VHR GRTGRA ++GTA + T+ + R ++ +E
Sbjct: 300 TDVAARGIDIESITHVFNYELPQDSDSYVHRIGRTGRANRQGTAYTLVTAREYRFLKQIE 359
Query: 167 RDVGCKFEFVSPPVVEDVLESSAEQVVATLN-GVHPESVEFFTPTAQRLIEEKGTDALAA 225
+D + P ++D+ S + +V + + + + F P L EE +A+
Sbjct: 360 KDTKGTIKRKELPTIDDIFLSKYKSIVGRVKETLSQDDYKRFVPLVTELDEEYSLVDVAS 419
Query: 226 ALAQL---SGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAA 282
AL + S + S+ ++E G+V + L + + ++ + ++ F+ +
Sbjct: 420 ALMYMVYTKEISYEYTENSISSNEGGFVRVFL---NVGRKDKLNPKKLITFIKESARIRG 476
Query: 283 DEIGKIHII 291
DEIG I I+
Sbjct: 477 DEIGDIDIL 485
>gi|336366770|gb|EGN95116.1| hypothetical protein SERLA73DRAFT_162691 [Serpula lacrymans var.
lacrymans S7.3]
Length = 662
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 95/160 (59%), Gaps = 5/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + I+ KR++L D++ GG T+VF +TKR AD
Sbjct: 398 VFLSVGRVGSTSENITQKIEF----VEDNDKRSVLLDILASEPAGGLTLVFVETKRMADM 453
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S + + + + ++HGD +Q +RE L FR G+ LVAT VAARGLDIPNV +I+Y
Sbjct: 454 LSDFLMANRLPATSIHGDRTQRERETALQTFRTGRTPFLVATAVAARGLDIPNVTHVINY 513
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP+D + +VHR GRTGRAG G A F R VR L
Sbjct: 514 DLPSDIDDYVHRIGRTGRAGNTGVATAFFNRGNRNIVRDL 553
>gi|319654684|ref|ZP_08008763.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
gi|317393600|gb|EFV74359.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
Length = 472
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 5/223 (2%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 77
E I+ Y I +K +L+ L+ + + IVF +TKR DE++ AL +
Sbjct: 190 EMTVSSIEQYYIEVHEKNKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELAEALNLRGYMA 248
Query: 78 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
E +HGD+SQ +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR
Sbjct: 249 EGIHGDLSQAKRISVLRKFKEGSIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHR 308
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV-ATL 196
GRTGRAGK G A+ ++ + +ER K E + P +++ LE + V+ +
Sbjct: 309 IGRTGRAGKTGVAMTFINPREKSYLHVVERTTKRKMERMDAPTLDEALEGQQKAVMEKIM 368
Query: 197 NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
+ ++E + A L+ +K DA A L ++ P +
Sbjct: 369 QTIEENNLESYKEAADELLAQK--DASTVVQAVLKMLTKEPDT 409
>gi|443244490|ref|YP_007377715.1| ATP-dependent RNA helicase [Nonlabens dokdonensis DSW-6]
gi|442801889|gb|AGC77694.1| ATP-dependent RNA helicase [Nonlabens dokdonensis DSW-6]
Length = 655
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 46/289 (15%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VF +TKRD V+ L + ++EALHGD+SQ QR+ + FR +L+ATDVAARG
Sbjct: 246 VVFCRTKRDTQNVADELNNNGYSTEALHGDMSQAQRDAAMKRFRNKNLKLLIATDVAARG 305
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ ++ +IH+ LP+DPE + HRSGRT RAGK+G +I + T R ++ +E+ + F
Sbjct: 306 IDVDDITHVIHFALPDDPEFYAHRSGRTARAGKKGESIALITKGDMRKLKFMEKKLSISF 365
Query: 174 EFVSPPVVEDVLESSAEQVVATLNG--VHPESVEFFTPTAQRLIEEKGTDALAA------ 225
+ P +E + + + L G ++P+ + + +E+ D L
Sbjct: 366 DRGEIPALEAITQKRISRWTENLKGQEINPKISDELFEEVKASLEDVSKDELIGKFLTKE 425
Query: 226 --------ALAQLSGFS-----------RPPSSRSLINHEQGWVT--LQLTRDSAFSRGF 264
++ L+ S R P SR E+G T + L R ++G
Sbjct: 426 YNSIYKRNSITDLNDRSKGREDSGEYRERKPRSRG---REEGMKTYFINLGRKDDMNKG- 481
Query: 265 MSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGA--VFDLPEEIAKEL 311
+++GF+ DV +IG+I + GA D+ EE+A ++
Sbjct: 482 ----ALLGFVCDVTGIDGKDIGRIVL------DGAHSFMDVKEEVAPQM 520
>gi|402297853|ref|ZP_10817596.1| ATP-dependent RNA helicase [Bacillus alcalophilus ATCC 27647]
gi|401726922|gb|EJT00129.1| ATP-dependent RNA helicase [Bacillus alcalophilus ATCC 27647]
Length = 509
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 111/201 (55%), Gaps = 3/201 (1%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 77
E E I+ + I K L L+ ++ IVF +TKR DE+S AL +
Sbjct: 209 EVTMENIEQFYIELHEKQKFDALCRLVDIHTPE-LAIVFGRTKRRVDELSEALIKRGYRA 267
Query: 78 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
E +HGD++Q +R+ L F+ G +LVATDVAARGLDI V + +++LP DPE++VHR
Sbjct: 268 EGIHGDLNQAKRDSVLRKFKNGLIEILVATDVAARGLDISGVTHVYNFDLPQDPESYVHR 327
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL- 196
GRTGRAGK G A+ T S++ V ++E+ K P E+ +E + V+A L
Sbjct: 328 IGRTGRAGKSGMAVTFATPSEKEHVAAIEKTSKKKMTKQPMPTFEEAMEGQQKLVLAQLR 387
Query: 197 NGVHPESVEFFTPTAQRLIEE 217
+ E F+ A+ L++E
Sbjct: 388 EKLDQEDTNFYRAIAKDLLQE 408
>gi|325859866|ref|ZP_08172996.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
18C-A]
gi|327312944|ref|YP_004328381.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
gi|325482792|gb|EGC85795.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
18C-A]
gi|326946277|gb|AEA22162.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
Length = 628
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 120/209 (57%), Gaps = 11/209 (5%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+++E AE + A K L L+ Y K IVF +TK + E++ L
Sbjct: 207 VGSRNEG-AENVNHIYYMVNARDKYLALKRLVDFYPKI-YAIVFCRTKVETQEIADKLIK 264
Query: 74 I-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+E+LHGD+SQ QR+ T+ FR +LVATDVAARGLD+ ++ +I+Y LP+D E
Sbjct: 265 DGYNAESLHGDLSQQQRDLTMQKFRSHLTQILVATDVAARGLDVNDLTHVINYGLPDDIE 324
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+ HRSGRTGRAGK+GT+I + S ++ VR++ER++G +F + P E++ + +Q+
Sbjct: 325 NYTHRSGRTGRAGKKGTSISIIHSREKHKVRNIEREIGKEFVDGTLPAPEEICK---KQL 381
Query: 193 VATLN-----GVHPESVEFFTPTAQRLIE 216
T++ V E +E + R E
Sbjct: 382 FKTMDDILKTDVDEEQIEPYMKDINRQFE 410
>gi|319637745|ref|ZP_07992511.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
gi|317400900|gb|EFV81555.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
Length = 463
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 94/153 (61%), Gaps = 2/153 (1%)
Query: 24 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHG 82
++ + I+ A KR +L LI V + IVF +TK+ D+V+ L IA++++HG
Sbjct: 222 NVEQHIIAVDALKKRNLLERLI-VDLHMNQVIVFCKTKQSVDQVTRDLVRRHIAAQSIHG 280
Query: 83 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 142
D SQ R TLN F++G VLVATDVAARGLDI + +I+YELP PE +VHR GRTG
Sbjct: 281 DKSQQSRLETLNAFKEGTLRVLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTG 340
Query: 143 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 175
RAG +G AI + ++++ +++ G +
Sbjct: 341 RAGADGVAISLMDKTEQKMFEAIKELTGSDLKV 373
>gi|345883213|ref|ZP_08834660.1| hypothetical protein HMPREF0666_00836 [Prevotella sp. C561]
gi|345044002|gb|EGW48051.1| hypothetical protein HMPREF0666_00836 [Prevotella sp. C561]
Length = 640
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 115/193 (59%), Gaps = 6/193 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+++E AE + A K L L+ Y K IVF +TK + E++ L
Sbjct: 207 VGSRNEG-AESVNHIYYMVNARDKYLALKRLVDFYPKI-YAIVFCRTKLETQEIADKLIK 264
Query: 74 I-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+EALHGD+SQ QR+ T+ FR +LVATDVAARGLD+ ++ +I+Y LP+D E
Sbjct: 265 DGYNAEALHGDLSQQQRDLTMQKFRSHLTQILVATDVAARGLDVNDLTHVINYGLPDDIE 324
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+ HRSGRTGRAGK+GT+I + S ++ VR++ER++G F + P E++ + +Q+
Sbjct: 325 NYTHRSGRTGRAGKKGTSISIIHSREKYKVRNIEREIGKDFVDGTLPSPEEICK---KQL 381
Query: 193 VATLNGVHPESVE 205
T++ + V+
Sbjct: 382 FKTMDDILKTDVD 394
>gi|312881457|ref|ZP_07741251.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309370879|gb|EFP98337.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 620
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 113/187 (60%), Gaps = 4/187 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LVATDV AR
Sbjct: 248 SIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++ER
Sbjct: 308 GLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTIERVTKST 367
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTDA--LAAALAQ 229
E + P + V + E++ A L +++E FT ++L + DA LAA L +
Sbjct: 368 MEEIQLPHRDKVAAARLEKLGAELETEKEHKALEKFTELVEKLQDTLELDAATLAAILLK 427
Query: 230 LSGFSRP 236
RP
Sbjct: 428 RQQGKRP 434
>gi|385809721|ref|YP_005846117.1| Superfamily II DNA/RNA helicase [Ignavibacterium album JCM 16511]
gi|383801769|gb|AFH48849.1| Superfamily II DNA/RNA helicase [Ignavibacterium album JCM 16511]
Length = 567
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 96/159 (60%), Gaps = 2/159 (1%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEAL 80
AE IK + A + L ++ Y + I+F +TKR+ +V+ L L +EAL
Sbjct: 215 AENIKHICYTVNAKDRYLTLKRIVDYYPEIY-GIIFCRTKRETQDVADLLLKDGYNAEAL 273
Query: 81 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 140
HGD+SQ QRE +N FRQ +L+ATDVAARGLD+ + +I+Y LP++ E + HRSGR
Sbjct: 274 HGDLSQAQRETVMNKFRQRNIQLLIATDVAARGLDVDGLTHVINYNLPDELEIYTHRSGR 333
Query: 141 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 179
TGRAGK GT+I++ ++ +R++E KFE P
Sbjct: 334 TGRAGKTGTSIVITNLKEKSKLRTIENQTNKKFEHHKVP 372
>gi|332881684|ref|ZP_08449332.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|357044670|ref|ZP_09106319.1| DEAD/DEAH box helicase [Paraprevotella clara YIT 11840]
gi|332680323|gb|EGJ53272.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|355532477|gb|EHH01861.1| DEAD/DEAH box helicase [Paraprevotella clara YIT 11840]
Length = 679
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 117/206 (56%), Gaps = 5/206 (2%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+++E AE + A K L ++ Y K I+F +T+ + EV+ L
Sbjct: 207 VGSRNEG-AETVNHVYYMVHAKDKYLALKRIVDYYPKI-YAIIFCRTRMETQEVADKLIQ 264
Query: 74 I-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGD+SQ QR+ T+ FRQ + LVATDVAARGLD+ ++ +I+Y +P+D E
Sbjct: 265 DGYNADSLHGDLSQQQRDLTMQKFRQHRVQFLVATDVAARGLDVEDLTHVINYGMPDDIE 324
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+ HRSGRTGRAGK+GT+I + + +R +R +E+ +G +F P +++ +V
Sbjct: 325 NYTHRSGRTGRAGKKGTSICIVHTRERSKIREIEKVIGKEFVKGEMPSGKEICAKQLYKV 384
Query: 193 VATLNGVH--PESVEFFTPTAQRLIE 216
+ + V E +E F P R +E
Sbjct: 385 IDDIERVEVDEEEIEQFLPEVYRKLE 410
>gi|322703781|gb|EFY95385.1| ATP-dependent RNA helicase ded-1 [Metarhizium anisopliae ARSEF 23]
Length = 665
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 96/160 (60%), Gaps = 6/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + ++ KR++L D++ +A GG T++F +TKR AD
Sbjct: 396 VFLSVGRVGSTSENITQKVEF----VEDIDKRSVLLDILHTHA-GGLTLIFVETKRMADS 450
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S + + ++HGD +Q +RER L FR G+ +LVAT VAARGLDIPNV +I+Y
Sbjct: 451 LSDFLINQSFPATSIHGDRTQRERERALEFFRNGRCPILVATAVAARGLDIPNVTHVINY 510
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP D + +VHR GRTGRAG G A F R VR L
Sbjct: 511 DLPTDVDDYVHRIGRTGRAGNTGIATAFFNRGNRGIVREL 550
>gi|150391484|ref|YP_001321533.1| DEAD/DEAH box helicase [Alkaliphilus metalliredigens QYMF]
gi|149951346|gb|ABR49874.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
QYMF]
Length = 484
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 99/170 (58%), Gaps = 4/170 (2%)
Query: 37 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNG 95
K +LSD IT+ I+F TK+ DEV+ L + E +HG + Q R R +N
Sbjct: 229 KMKLLSD-ITIVENPDSCIIFCNTKQRVDEVNDELIRLNYTCEKIHGGMEQRDRVRVMNE 287
Query: 96 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 155
F+QG F LVATDVAARG+DI N+ L+I+Y++P D E++VHR GRTGR +EG AI T
Sbjct: 288 FKQGYFRYLVATDVAARGIDIDNISLVINYDIPQDKESYVHRIGRTGRISREGRAITFVT 347
Query: 156 SSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVE 205
+ + ++ + R +G + + P +E V S E+ V +N PE E
Sbjct: 348 QYEDKFLKDIHRYIGKEIPLMQRPEIETV-NDSKEEFVEKIN-TKPEVKE 395
>gi|410082495|ref|XP_003958826.1| hypothetical protein KAFR_0H02820 [Kazachstania africana CBS 2517]
gi|372465415|emb|CCF59691.1| hypothetical protein KAFR_0H02820 [Kazachstania africana CBS 2517]
Length = 611
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 101/166 (60%), Gaps = 8/166 (4%)
Query: 1 MLNYFVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQT 60
+ NY +F +VG+ E + + I I K++ L DL+ Y G T++F +T
Sbjct: 351 LKNY--VFLSVGRVGSTSENITQKI----IMVEDMDKKSALLDLL-AYQHEGLTLIFVET 403
Query: 61 KRDADEVS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 119
KR AD+++ + + A+HGD +Q +RER L F+ G+ +LVAT VAARGLDIPNV
Sbjct: 404 KRMADQLTDFLIMQNFNATAIHGDRTQEERERALGAFKAGRADILVATAVAARGLDIPNV 463
Query: 120 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
L+I+++LP+D + +VHR GRTGRAG G AI F S+ V+ L
Sbjct: 464 TLVINFDLPSDIDDYVHRIGRTGRAGNTGVAISFFNSNNTNIVKGL 509
>gi|205372271|ref|ZP_03225085.1| hypothetical protein Bcoam_02010 [Bacillus coahuilensis m4-4]
Length = 499
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 95/149 (63%), Gaps = 7/149 (4%)
Query: 55 IVFTQTKRDADEVSLALTSI--IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
IVF +TKR DE+S AL SI +E +HGD+SQ +R L F++G+ VLVATDVAAR
Sbjct: 244 IVFGRTKRRVDELSKAL-SIRGYQAEGIHGDLSQAKRSSVLRKFKEGRIEVLVATDVAAR 302
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLDI V + +Y++P DPE++VHR GRTGRAGKEG A+ T + +R +E+ +
Sbjct: 303 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAMTFVTPREMGYLRIVEQTTNKR 362
Query: 173 FEFVSPPVVEDVLES----SAEQVVATLN 197
+ PP V + LE + E++V +N
Sbjct: 363 MTPMRPPSVNEALEGQQRLAKEKLVEAIN 391
>gi|13473704|ref|NP_105272.1| DEAD/DEAH box helicase [Mesorhizobium loti MAFF303099]
gi|14024455|dbj|BAB51058.1| DEAD-BOX protein, ATP-independent RNA helicase [Mesorhizobium loti
MAFF303099]
Length = 620
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 106/181 (58%), Gaps = 8/181 (4%)
Query: 18 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT----S 73
+EK I+ A++ + + +++ Y + +VF T+ + ++ S
Sbjct: 210 EEKQHLDIEYRALNVAQADRENAIINVLRFY-EAKNALVFCNTRAAVNHLTARFNNRNFS 268
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
++A L G++SQ++R L R G+ V +ATDVAARG+D+PN++L+IH +LP +PET
Sbjct: 269 VVA---LSGELSQNERSHALQAMRDGRAKVCIATDVAARGIDLPNLELVIHADLPTNPET 325
Query: 134 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 193
+HRSGRTGRAG++G + L+ S RR L ++ G K + SPP +DV+ E+++
Sbjct: 326 LLHRSGRTGRAGRKGVSALIVPGSARRRTERLLQNAGLKATWASPPSADDVIRRDDERIL 385
Query: 194 A 194
A
Sbjct: 386 A 386
>gi|325268230|ref|ZP_08134863.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
multiformis DSM 16608]
gi|324989372|gb|EGC21322.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
multiformis DSM 16608]
Length = 668
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 114/187 (60%), Gaps = 6/187 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+++E AE + A K L L+ Y K IVF +TK + E++ L
Sbjct: 242 VGSRNEG-AENVNHIYYMVNARDKYLALKRLVDFYPKI-YAIVFCRTKVETQEIADKLIK 299
Query: 74 I-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+E+LHGD+SQ QR+ T+ FR +LVATDVAARGLD+ ++ +I+Y LP+D E
Sbjct: 300 DGYNAESLHGDLSQQQRDLTMQKFRSHLTQILVATDVAARGLDVNDLTHVINYGLPDDIE 359
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+ HRSGRTGRAGK+GT+I + S ++ VR++ER++G +F + P E++ + +Q+
Sbjct: 360 NYTHRSGRTGRAGKKGTSISIIHSREKHKVRNIEREIGKEFVDGTLPTPEEICK---KQL 416
Query: 193 VATLNGV 199
T++ +
Sbjct: 417 FKTMDDI 423
>gi|150025863|ref|YP_001296689.1| DEAD/DEAH box helicase [Flavobacterium psychrophilum JIP02/86]
gi|149772404|emb|CAL43884.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family
[Flavobacterium psychrophilum JIP02/86]
Length = 644
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 111/187 (59%), Gaps = 9/187 (4%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
++VF +TKRD V+ L ++ ALHGD+SQ QR+ + FR + +LVATDVAAR
Sbjct: 245 SVVFCRTKRDTQAVAEKLVEDGYSAAALHGDLSQAQRDGVMKAFRGRQIQMLVATDVAAR 304
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+D+ NV +++Y+LP++ ET+ HRSGRTGRAGK GT+I++ T S+ R + S+ER + K
Sbjct: 305 GIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSEIRKISSIERIIKQK 364
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHPESVEF----FTPTAQRLIEEKGTDALAAALA 228
FE V+ +E Q++ N + V+ + P ++E+ + L +
Sbjct: 365 FE---EKVIPSGIEICEIQLLHLANKIKDTEVDHEIDNYLPAINSVLEDLSKEELIKKMV 421
Query: 229 QLSGFSR 235
+ F+R
Sbjct: 422 SVE-FNR 427
>gi|146300157|ref|YP_001194748.1| DEAD/DEAH box helicase [Flavobacterium johnsoniae UW101]
gi|146154575|gb|ABQ05429.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae
UW101]
Length = 634
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 112/187 (59%), Gaps = 9/187 (4%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
++VF +TKRD V+ L ++ ALHGD+SQ QR+ + FR + +LVATDVAAR
Sbjct: 245 SVVFCRTKRDTQAVAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQMLVATDVAAR 304
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+D+ NV +++Y+LP++ ET+ HRSGRTGRAGK GT+I++ T S+ R + S+ER + K
Sbjct: 305 GIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISSIERIIKQK 364
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHPESVEF----FTPTAQRLIEEKGTDALAAALA 228
FE + P ++ E Q++ N + V+ + P ++E+ + L +
Sbjct: 365 FEEKAIPSGIEICEI---QLLHLANKIKDTEVDHEIDNYLPAINNVLEDLSKEELIKKMV 421
Query: 229 QLSGFSR 235
+ F+R
Sbjct: 422 SVE-FNR 427
>gi|85818935|gb|EAQ40094.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
Length = 638
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 110/172 (63%), Gaps = 2/172 (1%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+++F +TKRD +V+ L + ALHGD+SQ+QR+ + FR + +LVATDVAAR
Sbjct: 244 SVIFCRTKRDTQKVAEQLIEDGYNAGALHGDLSQNQRDLVMKSFRNNQIQMLVATDVAAR 303
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+D+ ++ +I+Y+LP++ ET+ HRSGRTGRAGK GT++++ T S+ R ++ LE+ + K
Sbjct: 304 GIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKTGTSMVIVTKSEMRKIKQLEKILAKK 363
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVH-PESVEFFTPTAQRLIEEKGTDAL 223
F+ + P +++ + + ++N + ++ + P + ++++ + L
Sbjct: 364 FDQKTIPDGKEITQVQLFHLANSINNTEINQEIDAYLPEIEEVLKDNTKEEL 415
>gi|372221768|ref|ZP_09500189.1| DEAD/DEAH box helicase [Mesoflavibacter zeaxanthinifaciens S86]
Length = 588
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 105/165 (63%), Gaps = 2/165 (1%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+++F +TKRD +++ L + ALHGD+SQ+QR+ +N FR+ + +LVATDVAAR
Sbjct: 245 SVIFCRTKRDTQKIAEKLIEDGYNAGALHGDLSQNQRDLAMNAFRKKQIQMLVATDVAAR 304
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+D+ +V +I+Y+LP++ ET+ HRSGRTGRAGK G ++++ T S+ R +R++E+ + K
Sbjct: 305 GIDVDDVTHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIITRSEIRKIRAIEKKIQTK 364
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHPES-VEFFTPTAQRLIE 216
F + P ++ E + ++ S +E + P ++E
Sbjct: 365 FLEKNIPSGMEICEIQLYHLANSIKETKINSEIESYLPAINDVLE 409
>gi|444380024|ref|ZP_21179191.1| Cold-shock DEAD-box protein A [Enterovibrio sp. AK16]
gi|443675845|gb|ELT82559.1| Cold-shock DEAD-box protein A [Enterovibrio sp. AK16]
Length = 624
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/187 (38%), Positives = 115/187 (61%), Gaps = 4/187 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T++D + ++ L++ + ALHGDI Q RERT++ ++G +LVATDV AR
Sbjct: 248 SIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKRGVIDILVATDVVAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P + + +Y++P D E+++HR GRTGRAG+ G AIL+ ++Q R +R++ER +
Sbjct: 308 GLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRAGKAILLVRTNQIRMLRTIERVTSTR 367
Query: 173 FEFVSPPVVEDVLESSAEQVVATLN-GVHPESVEFFTPTAQRLIEEKGTDA--LAAALAQ 229
E + P+ + V E+ ++ A L +S+E F ++L E+ DA LAA L Q
Sbjct: 368 MEEIQLPLRDKVAEARLARLAADLQEQKESDSIEAFVGLVEKLQEQIDVDAATLAAMLLQ 427
Query: 230 LSGFSRP 236
RP
Sbjct: 428 RQQGKRP 434
>gi|218134053|ref|ZP_03462857.1| hypothetical protein BACPEC_01943 [[Bacteroides] pectinophilus ATCC
43243]
gi|217991428|gb|EEC57434.1| DEAD/DEAH box helicase [[Bacteroides] pectinophilus ATCC 43243]
Length = 559
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 106/185 (57%), Gaps = 6/185 (3%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 77
E E I+ Y + +K ILS LI +Y ++VF TK+ D++ L +
Sbjct: 234 ELTVENIEQYYFEVRSKNKDEILSRLIDIY-NPKLSVVFCNTKKQVDDLISELKGRGYFA 292
Query: 78 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
+ +HGD+ Q QR+R +N FR+GK +L+ATDVAARG+D+ +VD++ +Y+LP D E +VHR
Sbjct: 293 DGIHGDMKQAQRDRVMNDFRKGKTEILIATDVAARGIDVDDVDIVFNYDLPQDEEYYVHR 352
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVV 193
GRTGRAG+ G A T + ++ +ER K P ++DV +++ EQV
Sbjct: 353 IGRTGRAGRAGLAFSFVTGKEIYKLKDIERYCKTKIMARQIPSLDDVKNTRIDNLFEQVR 412
Query: 194 ATLNG 198
TL
Sbjct: 413 KTLEA 417
>gi|119898413|ref|YP_933626.1| ATP-dependent RNA helicase [Azoarcus sp. BH72]
gi|119670826|emb|CAL94739.1| ATP-dependent RNA helicase [Azoarcus sp. BH72]
Length = 650
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 130/240 (54%), Gaps = 16/240 (6%)
Query: 13 QVGNQDEKLAEGIKLYAISTTATS------------KRTILSDLITVYAKGGKTIVFTQT 60
+V +Q + + +K+ A ++T ++ K L+ ++ K IVF +T
Sbjct: 195 RVAHQHLREPKEVKIRAATSTVSAISQRYWLVRGVDKLDALTRILDAEEKLDAAIVFVRT 254
Query: 61 KRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 119
K E++ L + A+ AL+GD++Q RER + + G ++VATDVAARG+D+P +
Sbjct: 255 KTATTELADKLEARGYAAAALNGDMTQGLRERVIEQLKNGSLDIVVATDVAARGIDVPRI 314
Query: 120 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 179
+I+Y++P D E +VHR GRTGRAG+EG+AIL + R ++++ER E ++ P
Sbjct: 315 SHVINYDIPYDTEAYVHRIGRTGRAGREGSAILFVAPRESRMLKAIERATRQPIEAIALP 374
Query: 180 VVEDVLESSAEQVVA-TLNGVHPESVEFFTPTAQRLIEEKGTDA--LAAALAQLSGFSRP 236
E+V Q L+ + E + FF L++E DA +AAALA L+ +P
Sbjct: 375 SREEVAGRRVAQFKQLVLDTLQQEDLGFFMEVVNGLVDEHEIDAHEIAAALAFLAQRDKP 434
>gi|407768377|ref|ZP_11115756.1| DEAD/DEAH box helicase [Thalassospira xiamenensis M-5 = DSM 17429]
gi|407289090|gb|EKF14567.1| DEAD/DEAH box helicase [Thalassospira xiamenensis M-5 = DSM 17429]
Length = 602
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 83/124 (66%), Gaps = 1/124 (0%)
Query: 53 KTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111
+ +VFT+TK DADE+S L + ++A+HGD Q R++ L FR G+F VL+ATDVAA
Sbjct: 247 RVLVFTKTKADADELSFQLRDEGVDTDAIHGDKQQRIRQKILRNFRNGQFPVLIATDVAA 306
Query: 112 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 171
RG+D+P + +I+Y+LP DPE +VHR GRTGR EG AI R +R++ER +G
Sbjct: 307 RGIDVPGITHVINYDLPTDPENYVHRIGRTGRGSAEGIAISFCEPRDVRHLRNIERVIGQ 366
Query: 172 KFEF 175
+ E
Sbjct: 367 QVEI 370
>gi|449548222|gb|EMD39189.1| hypothetical protein CERSUDRAFT_81950 [Ceriporiopsis subvermispora
B]
Length = 641
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 99/160 (61%), Gaps = 6/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + ++ KR++L D+++ + GG T+VF +TKR AD
Sbjct: 392 VFLSVGRVGSTSENITQKVEY----VEDPDKRSVLLDVLSAH-DGGLTLVFVETKRMADM 446
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S L S + + ++HGD +Q +RE L FR G+ +LVAT VAARGLDIPNV +I+Y
Sbjct: 447 LSDFLLASNLPATSIHGDRTQRERELALQTFRSGRTPILVATAVAARGLDIPNVTHVINY 506
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP+D + +VHR GRTGRAG G A F + R VR L
Sbjct: 507 DLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNRNIVRDL 546
>gi|288870006|ref|ZP_06112545.2| DEAD-box ATP-dependent RNA helicase YdbR [Clostridium hathewayi DSM
13479]
gi|288868832|gb|EFD01131.1| DEAD-box ATP-dependent RNA helicase YdbR [Clostridium hathewayi DSM
13479]
Length = 561
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 114/207 (55%), Gaps = 5/207 (2%)
Query: 28 YAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQ 86
Y +K ++ L+ +YA ++VF TK+ DE+ AL +E LHGD+ Q
Sbjct: 221 YYYEVKPKTKVEVMCRLLDMYAPK-LSVVFCNTKKGVDELVQALQGRGYFAEGLHGDLKQ 279
Query: 87 HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 146
QR+R +N FR G+ +LVATDVAARG+D+ +V+ + +Y+LP D E +VHR GRTGRAG+
Sbjct: 280 IQRDRVMNSFRNGRTDILVATDVAARGIDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGR 339
Query: 147 EGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES--V 204
EG A + +R ++R K + P + DV ++++ + ES
Sbjct: 340 EGIAFSFVVGKEVYKLRDIQRYCKTKIIPQAIPSLNDVTGIKVDKILENVADTIEESDLS 399
Query: 205 EFFTPTAQRLIEEKGTDA-LAAALAQL 230
E ++L+EE T LAAAL ++
Sbjct: 400 EMINILEKKLLEEDYTSLDLAAALLKM 426
>gi|261364093|ref|ZP_05976976.1| ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC 25996]
gi|288567659|gb|EFC89219.1| ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC 25996]
Length = 471
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 94/148 (63%), Gaps = 2/148 (1%)
Query: 24 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHG 82
++ + I+ A KR +L LI V + + IVF +TK+ D+V+ L +A++++HG
Sbjct: 222 NVEQHIIAVDALKKRNLLERLI-VDLQMNQVIVFCKTKQSVDQVTRDLVRRNLAAQSIHG 280
Query: 83 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 142
D SQ R TLN F++G VLVATDVAARGLDI + +I+YELP PE +VHR GRTG
Sbjct: 281 DKSQQSRLETLNAFKEGSLRVLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTG 340
Query: 143 RAGKEGTAILMFTSSQRRTVRSLERDVG 170
RAG +G AI + ++++ +++ G
Sbjct: 341 RAGADGVAISLMDKTEQKMFEAIKELTG 368
>gi|349610828|ref|ZP_08890152.1| hypothetical protein HMPREF1028_02127 [Neisseria sp. GT4A_CT1]
gi|348615546|gb|EGY65061.1| hypothetical protein HMPREF1028_02127 [Neisseria sp. GT4A_CT1]
Length = 468
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 94/148 (63%), Gaps = 2/148 (1%)
Query: 24 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHG 82
++ + I+ A KR +L LI V + + IVF +TK+ D+V+ L +A++++HG
Sbjct: 222 NVEQHIIAVDALKKRNLLERLI-VDLQMNQVIVFCKTKQSVDQVTRDLVRRNLAAQSIHG 280
Query: 83 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 142
D SQ R TLN F++G VLVATDVAARGLDI + +I+YELP PE +VHR GRTG
Sbjct: 281 DKSQQSRLETLNAFKEGSLRVLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTG 340
Query: 143 RAGKEGTAILMFTSSQRRTVRSLERDVG 170
RAG +G AI + ++++ +++ G
Sbjct: 341 RAGADGVAISLMDKTEQKMFEAIKELTG 368
>gi|345304632|ref|YP_004826534.1| DEAD/DEAH box helicase domain-containing protein [Rhodothermus
marinus SG0.5JP17-172]
gi|345113865|gb|AEN74697.1| DEAD/DEAH box helicase domain protein [Rhodothermus marinus
SG0.5JP17-172]
Length = 505
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 101/172 (58%), Gaps = 8/172 (4%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F TKRD + + L + ++A+ GD+ Q QRER ++ R+G+ +LVATDVAARG
Sbjct: 284 IIFANTKRDVEYLGQFLKNYGYNADAITGDLPQKQRERIMDRLRKGQLRLLVATDVAARG 343
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+DI ++ + Y++P DPE +VHRSGRTGR GKEGT I++ T + +R++ R
Sbjct: 344 IDISDLSHVFMYDVPQDPEYYVHRSGRTGRVGKEGTTIVLVTPLEEARLRAIARQYDIPL 403
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPESVEF-------FTPTAQRLIEEK 218
E + P E V E AE+ VA L + E+ F P ++L +E+
Sbjct: 404 EKGTLPTPEVVAERVAERAVALLEDRYRETTSLDRERIARFVPLVEQLAQEE 455
>gi|404405997|ref|ZP_10997581.1| DNA/RNA helicase [Alistipes sp. JC136]
Length = 652
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 7/208 (3%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK DEV+ L + ++E LHGD+SQ QRE+ L FR +L+ATDVAARG
Sbjct: 248 IVFCRTKIGVDEVTTRLVAQGYSAEGLHGDVSQAQREKILRKFRDKAVNILIATDVAARG 307
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ N+ +I+Y LP D E++VHR GRTGRAG++GTAI + ++ R + RD+
Sbjct: 308 IDVSNLSHVINYSLPQDSESYVHRIGRTGRAGRQGTAITFISGAELRRFNWMMRDIKADI 367
Query: 174 EFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLS- 231
+ + P +D++ ++ L V E+ + A L+E D AL +L+
Sbjct: 368 KRETLPSPQDIVAMKRAKIKDDLREIVESEAYGDYADYAAELLETYAPDVALGALLRLAF 427
Query: 232 ----GFSRPPSSRSLINHEQGWVTLQLT 255
S P RS +G L LT
Sbjct: 428 RSELDQSNYPEIRSFSVDRKGKTRLFLT 455
>gi|323509827|dbj|BAJ77806.1| cgd6_4860 [Cryptosporidium parvum]
Length = 390
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 92/144 (63%), Gaps = 2/144 (1%)
Query: 16 NQDEKLAEG-IKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 73
+DE A I+ AI + +L D+IT+YA GK I+FT+TK+ A+E+++
Sbjct: 247 EEDEAAARSRIRHLAIQCAYPQRTGLLGDIITMYAGINGKCIIFTETKQTANEIAMRSEI 306
Query: 74 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 133
+ LHGDI Q+QRE L F++G++ LVATDVAARGL I +V ++I P D +T
Sbjct: 307 SKMCQVLHGDIQQNQREIALQAFKEGRYRCLVATDVAARGLHIDDVAVVIQLAPPRDIDT 366
Query: 134 FVHRSGRTGRAGKEGTAILMFTSS 157
++HRSGRTGRAGK GTAI+ S
Sbjct: 367 YIHRSGRTGRAGKFGTAIMFCNMS 390
>gi|452974255|gb|EME74076.1| DEAD/DEAH box helicase [Bacillus sonorensis L12]
Length = 487
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 109/187 (58%), Gaps = 4/187 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE++ AL +E +HGD++Q +R L F+QG VLVATDVAARG
Sbjct: 245 IVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARG 304
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++E+ K
Sbjct: 305 LDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTTKRKM 364
Query: 174 EFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ + P +++ +E + V + + ++ F+ A L+E+ DA+ A +
Sbjct: 365 DRMKAPTLDEAIEGQQQVTVDRIRTIIEDNNLNFYMSAAAELLEDH--DAVTVVAAAIKM 422
Query: 233 FSRPPSS 239
++ P +
Sbjct: 423 MTKEPDN 429
>gi|255066127|ref|ZP_05317982.1| ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC 29256]
gi|419796194|ref|ZP_14321754.1| DEAD/DEAH box helicase [Neisseria sicca VK64]
gi|255049672|gb|EET45136.1| ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC 29256]
gi|385699736|gb|EIG30013.1| DEAD/DEAH box helicase [Neisseria sicca VK64]
Length = 468
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 94/148 (63%), Gaps = 2/148 (1%)
Query: 24 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHG 82
++ + I+ A KR +L LI V + + IVF +TK+ D+V+ L +A++++HG
Sbjct: 222 NVEQHIIAVDALKKRNLLERLI-VDLQMNQVIVFCKTKQSVDQVTRDLVRRNLAAQSIHG 280
Query: 83 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 142
D SQ R TLN F++G VLVATDVAARGLDI + +I+YELP PE +VHR GRTG
Sbjct: 281 DKSQQSRLETLNAFKEGSLRVLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTG 340
Query: 143 RAGKEGTAILMFTSSQRRTVRSLERDVG 170
RAG +G AI + ++++ +++ G
Sbjct: 341 RAGADGVAISLMDKTEQKMFEAIKELTG 368
>gi|331268314|ref|YP_004394806.1| ATP-dependent RNA helicase [Clostridium botulinum BKT015925]
gi|329124864|gb|AEB74809.1| ATP-dependent RNA helicase [Clostridium botulinum BKT015925]
Length = 528
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 148/293 (50%), Gaps = 29/293 (9%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+++F TK+ DEV L + +E LHGD+ Q QR+R +N FR G +LVATDVAAR
Sbjct: 246 SVIFCNTKKRVDEVVSQLQARGYFAEGLHGDMKQPQRDRVMNKFRNGTIEILVATDVAAR 305
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+D+ +V+ + +Y+LP D E +VHR GRTGRAG+ G A R +R +ER K
Sbjct: 306 GIDVDDVEAVFNYDLPQDEEYYVHRIGRTGRAGRSGIAFTFVAGKAIRKLRDIERYTKTK 365
Query: 173 FEFVSPPVVEDVLESSA----EQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALA 228
+ P DV E A E+V T+ H ++ L E+ T +AAAL
Sbjct: 366 VKRAEIPSASDVEEFKANTFLEKVKNTIEEGHLG--KYIDYIENLLDEDYATIDIAAALL 423
Query: 229 QLS-GFSRPPSSRSLINH------EQGWVTL--QLTRDSAFSRGFMSARSVMGFLSDVYP 279
++S G + ++ + E G V L + R++ + AR V+G ++
Sbjct: 424 KMSLGEEKKEEILNISDDIGDTGAEPGMVRLFINIGRNNK-----VQARDVIGAIAGETG 478
Query: 280 TAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTI--SKITKLPA 330
A IGKI I + ++P+E AKE+L +I NTI KI PA
Sbjct: 479 IAGKVIGKIDIYD----KFTFVEVPKENAKEVL--EIMKNNTIKGKKINIEPA 525
>gi|114046038|ref|YP_736588.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-7]
gi|113887480|gb|ABI41531.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
Length = 622
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 121/244 (49%), Gaps = 14/244 (5%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTA---------TSKRTILSDLITVYAKGGK--TI 55
M +V N+ K A I + A TT S+ L L+ V I
Sbjct: 189 MPEQIKRVANKHLKDATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVENTEGII 248
Query: 56 VFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 114
+F +T+ E++ L + AS LHGD++Q RER + + GK +L+ATDVAARGL
Sbjct: 249 IFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIATDVAARGL 308
Query: 115 DIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 174
D+ + +++Y++P D E +VHR GRTGRAG+ G AIL TS + R +R++ER +
Sbjct: 309 DVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNSRIS 368
Query: 175 FVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIE--EKGTDALAAALAQLSG 232
+ P E V E ++ L + ++F +L + E TD LAAAL
Sbjct: 369 PMKVPSPETVAERRLSRLGEQLAQTMTQDLDFMREAVAQLCQQLEVDTDLLAAALLHQVQ 428
Query: 233 FSRP 236
RP
Sbjct: 429 QERP 432
>gi|399019649|ref|ZP_10721795.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
gi|398097540|gb|EJL87844.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
Length = 477
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 104/189 (55%), Gaps = 23/189 (12%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTI---------------LSDLITVYAKGGKTIVFT 58
VGN +++ ++ I+ +AT I L D + + +VFT
Sbjct: 216 VGNMAKRITNAPQIIQIAGSATKHENIAQRVHFVDDLSHKNRLLDFLLRDVTMDQAVVFT 275
Query: 59 QTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 117
TKRDAD ++ L A+ ALHGD+ Q R RTL+G R+G+ VLVATDVAARG+D+P
Sbjct: 276 ATKRDADTIADRLNIAGFAAAALHGDMHQGARNRTLDGMRRGQVRVLVATDVAARGIDVP 335
Query: 118 NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 177
+ + +Y+LP PE +VHR GRTGRAG+ G A+ + ++ V+ +ER F
Sbjct: 336 GITHVFNYDLPKFPEDYVHRIGRTGRAGRNGVAVSLVNHAEGMHVKRIER-------FTK 388
Query: 178 PPVVEDVLE 186
P+ DV+E
Sbjct: 389 QPIPVDVVE 397
>gi|350572246|ref|ZP_08940551.1| ATP-dependent RNA helicase RhlE [Neisseria wadsworthii 9715]
gi|349790502|gb|EGZ44411.1| ATP-dependent RNA helicase RhlE [Neisseria wadsworthii 9715]
Length = 457
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 102/167 (61%), Gaps = 3/167 (1%)
Query: 1 MLNYFVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQT 60
+ N F+ +V Q+ A ++ + I+ KR++L LI V + IVF +T
Sbjct: 200 LANDFMNRPEQIEVAAQNTTNA-NVEQHVIAVDTAKKRSLLERLI-VDLNMNQVIVFCKT 257
Query: 61 KRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 119
K+ D+V+ L S I+++++HGD SQ R TLN F++G VLVATDVAARGLDI +
Sbjct: 258 KQSVDQVTRNLVRSEISAQSIHGDKSQQTRLETLNAFKEGSLRVLVATDVAARGLDIAEL 317
Query: 120 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 166
+I+YE+P PE +VHR GRTGRAG +G AI + ++++ +++
Sbjct: 318 PFVINYEMPTQPEDYVHRIGRTGRAGADGVAISLMDENEQKMFEAIK 364
>gi|323691087|ref|ZP_08105368.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
symbiosum WAL-14673]
gi|323504856|gb|EGB20637.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
symbiosum WAL-14673]
Length = 552
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 119/210 (56%), Gaps = 9/210 (4%)
Query: 28 YAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQ 86
Y +K ++ L+ +Y +IVF TKR D++ L +E LHGD+ Q
Sbjct: 221 YYYEVKPKTKVEVMCRLLDMY-DPKLSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQ 279
Query: 87 HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 146
QR+R +N FR G+ +L+ATDVAARG+D+ +V+ + +Y++P D E +VHR GRTGRAG+
Sbjct: 280 MQRDRVMNSFRNGRTDILIATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGR 339
Query: 147 EGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV--VEDVLESSAEQVVATLNGVHPES- 203
EG A + + +R ++R CK + + P+ + DV E+++ ++ + +S
Sbjct: 340 EGKAFSLVVGREVYKLREIQR--YCKTKIIPQPIPSLNDVTSIKVEKIMDSVEEIIRDSD 397
Query: 204 -VEFFTPTAQRLIEEKGTDA-LAAALAQLS 231
+ +R++EE T LAAAL ++S
Sbjct: 398 LDKIINIVEKRVLEEDYTTLDLAAALLKMS 427
>gi|323483414|ref|ZP_08088802.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum
WAL-14163]
gi|355627088|ref|ZP_09049059.1| hypothetical protein HMPREF1020_03138 [Clostridium sp. 7_3_54FAA]
gi|323403268|gb|EGA95578.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum
WAL-14163]
gi|354820528|gb|EHF04943.1| hypothetical protein HMPREF1020_03138 [Clostridium sp. 7_3_54FAA]
Length = 552
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 119/210 (56%), Gaps = 9/210 (4%)
Query: 28 YAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQ 86
Y +K ++ L+ +Y +IVF TKR D++ L +E LHGD+ Q
Sbjct: 221 YYYEVKPKTKVEVMCRLLDMY-DPKLSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQ 279
Query: 87 HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 146
QR+R +N FR G+ +L+ATDVAARG+D+ +V+ + +Y++P D E +VHR GRTGRAG+
Sbjct: 280 MQRDRVMNSFRNGRTDILIATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGR 339
Query: 147 EGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV--VEDVLESSAEQVVATLNGVHPES- 203
EG A + + +R ++R CK + + P+ + DV E+++ ++ + +S
Sbjct: 340 EGKAFSLVVGREVYKLREIQR--YCKTKIIPQPIPSLNDVTSIKVEKIMDSVEEIIRDSD 397
Query: 204 -VEFFTPTAQRLIEEKGTDA-LAAALAQLS 231
+ +R++EE T LAAAL ++S
Sbjct: 398 LDKIINIVEKRVLEEDYTTLDLAAALLKMS 427
>gi|269119742|ref|YP_003307919.1| DEAD/DEAH box helicase [Sebaldella termitidis ATCC 33386]
gi|268613620|gb|ACZ07988.1| DEAD/DEAH box helicase domain protein [Sebaldella termitidis ATCC
33386]
Length = 530
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 105/175 (60%), Gaps = 2/175 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK D D+V+ L +EA+HGDI+Q R +TL F++ + +LVATDVAARG
Sbjct: 246 IVFCRTKSDVDDVAQHLKGRGYDAEAIHGDITQAMRMKTLEDFKKKRINILVATDVAARG 305
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ ++ +I+Y +P +PE++VHR GRTGRAGK+G AI T + + ++R
Sbjct: 306 IDVNDLTHVINYSIPQEPESYVHRIGRTGRAGKKGIAITFVTPKEASKISKIQRLTKTDI 365
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPES-VEFFTPTAQRLIEEKGTDALAAAL 227
+ P +E+V+ E + A + + E ++T A+ L+ +K + + A+L
Sbjct: 366 KKEKIPKIEEVISVKKENLYACVEEIEKEEDFGYYTGMAKELLGDKDPEVVLASL 420
>gi|149183244|ref|ZP_01861688.1| ATP-dependent RNA helicase [Bacillus sp. SG-1]
gi|148849040|gb|EDL63246.1| ATP-dependent RNA helicase [Bacillus sp. SG-1]
Length = 470
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 120/211 (56%), Gaps = 9/211 (4%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ Y + K +LS L+ V + I+F +TKR DE++ ALT ++E +HGD
Sbjct: 196 IEQYFVKAHEKEKFDVLSRLLDVQSPE-LAIIFGRTKRRVDELARALTLRGYSAEGIHGD 254
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
+SQ +R L F++G+ VLVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 255 LSQAKRMTVLRQFKEGRIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 314
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES----SAEQVVATLNGV 199
AGKEG A+ T + +R +E+ + PP + LE + E++V T V
Sbjct: 315 AGKEGMAMTFVTPREMGYLRIVEKTTKKSMTQMKPPTSNEALEGQQRLAMEKLVET---V 371
Query: 200 HPESVEFFTPTAQRLIEEKGTDALAAALAQL 230
++ + A+ L+E+ + + AA +L
Sbjct: 372 KSNELQNYRGMAKELLEDHDSVEIVAAALRL 402
>gi|340363915|ref|ZP_08686226.1| ATP-dependent RNA helicase RhlE [Neisseria macacae ATCC 33926]
gi|339884619|gb|EGQ74389.1| ATP-dependent RNA helicase RhlE [Neisseria macacae ATCC 33926]
Length = 471
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 94/148 (63%), Gaps = 2/148 (1%)
Query: 24 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHG 82
++ + I+ A KR +L LI V + + IVF +TK+ D+V+ L +A++++HG
Sbjct: 222 NVEQHIIAVDALKKRNLLERLI-VDLQMNQVIVFCKTKQSVDQVTRDLMRRNLAAQSIHG 280
Query: 83 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 142
D SQ R TLN F++G VLVATDVAARGLDI + +I+YELP PE +VHR GRTG
Sbjct: 281 DKSQQSRLETLNAFKEGSLRVLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTG 340
Query: 143 RAGKEGTAILMFTSSQRRTVRSLERDVG 170
RAG +G AI + ++++ +++ G
Sbjct: 341 RAGADGVAISLMDKTEQKMFEAIKELTG 368
>gi|260903903|ref|ZP_05912225.1| DEAD/DEAH box helicase domain-containing protein [Brevibacterium
linens BL2]
Length = 606
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 109/349 (31%), Positives = 167/349 (47%), Gaps = 52/349 (14%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK+ +E++ L + + A++GDI Q RERT++ R GK +LVATDVAARG
Sbjct: 259 IMFVRTKQATEELAEKLRARGFKASAINGDIPQQARERTIDMLRNGKVDILVATDVAARG 318
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + L++++++P+D E++VHR GRTGRAG+ G AIL T ++R + S+ER K
Sbjct: 319 LDVERITLVVNFDIPHDTESYVHRIGRTGRAGRSGEAILFVTPREQRLLGSIERATKQKV 378
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGV--HPESVEFFTPTAQRLIEEK--GTDALAAALAQ 229
E + P VE++ + E+ ++ V E E T Q + TD +AAALA
Sbjct: 379 EQLKMPSVEELTNTRVEKFTKRIDDVLATTELTELATVIEQYELSRNVPATD-IAAALAS 437
Query: 230 LSGFS---------------------------RPPSSRSLINHEQGWVTLQLT--RDSAF 260
L S +P RS ++ T +L R+
Sbjct: 438 LVLESNTLKADPMPEPSRGKPGRDRDSGGRDGKPGRERSSRPRDENMTTYRLAIGRNERL 497
Query: 261 SRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGN 320
G +V+G +++ + EIG I I ++ + DL + ++L N QI G
Sbjct: 498 QPG-----AVVGAIANEGGLTSKEIGHIDIRSNHTLVDLPKDLDSSVMRKLSNTQI-QGR 551
Query: 321 TISKITKLPALQDDGPSSDNYGR-FSSRDRFSRGGGSRFSRGGARGGAR 368
I D P S R F R+ + G SR R RGGA+
Sbjct: 552 PI----------DIRPDSGRPARPFKKRNFDKQPGDSRNFRNDRRGGAK 590
>gi|398309564|ref|ZP_10513038.1| DEAD/DEAH box helicase [Bacillus mojavensis RO-H-1]
Length = 494
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 109/187 (58%), Gaps = 4/187 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLVATDVAARG
Sbjct: 245 IVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARG 304
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T + +R++E+ K
Sbjct: 305 LDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREISMLRAIEQTTKRKM 364
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ + P +++ LE + V L + ++ F+ A L+E+ DA+ A +
Sbjct: 365 DRMKEPTLDEALEGQQQVTVDRLRTTISENNLNFYMTAAAELLEDH--DAVTVVAAAIKM 422
Query: 233 FSRPPSS 239
++ P S
Sbjct: 423 ATKEPDS 429
>gi|340522872|gb|EGR53105.1| predicted protein [Trichoderma reesei QM6a]
Length = 561
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 106/184 (57%), Gaps = 7/184 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + ++ KR++L D++ +A GG T++F +TKR AD
Sbjct: 294 VFLSVGRVGSTSENITQKVEF----VEDIDKRSVLLDILHTHA-GGLTLIFVETKRMADS 348
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S + + ++HGD +Q +RER L FR G+ +LVAT VAARGLDIPNV +I+Y
Sbjct: 349 LSDFLINQSFPATSIHGDRTQRERERALEFFRNGRCPILVATAVAARGLDIPNVTHVINY 408
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 185
+LP D + +VHR GRTGRAG G A F R VR L D+ + PP +E +
Sbjct: 409 DLPTDVDDYVHRIGRTGRAGNTGIATAFFNRGNRGIVRELI-DLLKEANQEIPPFLEAIA 467
Query: 186 ESSA 189
S+
Sbjct: 468 RESS 471
>gi|302307229|ref|NP_983823.2| ADL273Cp [Ashbya gossypii ATCC 10895]
gi|442570182|sp|Q75B50.2|DED1_ASHGO RecName: Full=ATP-dependent RNA helicase DED1
gi|299788899|gb|AAS51647.2| ADL273Cp [Ashbya gossypii ATCC 10895]
gi|374107035|gb|AEY95943.1| FADL273Cp [Ashbya gossypii FDAG1]
Length = 623
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 104/182 (57%), Gaps = 18/182 (9%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEAL 80
+E I + KR++L DL+ + GG T+VF +TKR AD ++ + +++ A+
Sbjct: 374 SENITQKVLHVEDIDKRSVLLDLLAA-SDGGLTLVFVETKRMADALTDFLIMQNLSATAI 432
Query: 81 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 140
HGD +Q +RER L FR G+ VLVAT VAARGLDIPNV +I+Y+LP+D + +VHR GR
Sbjct: 433 HGDRTQAERERALAFFRTGRANVLVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGR 492
Query: 141 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 200
TGRAG G A F + V+ L D+LE + ++V + L+ +
Sbjct: 493 TGRAGNTGLATAFFNRGNKNVVKEL----------------VDILEEANQEVPSFLSQIA 536
Query: 201 PE 202
E
Sbjct: 537 KE 538
>gi|319900501|ref|YP_004160229.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
36-108]
gi|319415532|gb|ADV42643.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
36-108]
Length = 655
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 114/206 (55%), Gaps = 5/206 (2%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
+G ++E +K A K L ++ Y + I+F +T+++ E++ L
Sbjct: 207 IGRKNES-TNNVKHVVFCVHAKDKYAALKRIVDYYPQI-YGIIFCRTRKETQEIADKLMQ 264
Query: 74 I-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHG++SQ QR+ + FR +LVATDVAARGLD+ ++ +I+Y LP+D E
Sbjct: 265 EGYNADSLHGELSQAQRDAVMQKFRIRNLQLLVATDVAARGLDVDDLTHVINYGLPDDTE 324
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
++ HRSGRTGRAGK GT+I + ++ +R +ER +G KFE P + E +V
Sbjct: 325 SYTHRSGRTGRAGKTGTSIAIINLREKGKMRDIERIIGKKFEQGEMPTANQICEKQLLKV 384
Query: 193 VATLN--GVHPESVEFFTPTAQRLIE 216
+ L V+ E +E F P R ++
Sbjct: 385 IDDLEKVKVNDEEIETFMPDIYRKLD 410
>gi|341615128|ref|ZP_08701997.1| DNA and RNA helicase [Citromicrobium sp. JLT1363]
Length = 460
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 98/163 (60%), Gaps = 5/163 (3%)
Query: 22 AEGIKLYAISTTATSKRTILSDLIT----VYAKGGKTIVFTQTKRDADEVSLALTSI-IA 76
AE I+ + K+++L +++ + K + +VF +TK D V L + IA
Sbjct: 217 AERIEQFLFMVQQDEKQSLLELILSGRHEIPGKIERVLVFARTKHGCDRVVKKLAQVNIA 276
Query: 77 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 136
+ A+HG+ SQ QRER L+ F++ K VLVATDVAARG+DIP V +I+YELPN PE +VH
Sbjct: 277 ANAIHGNKSQPQRERALDEFKRAKTPVLVATDVAARGIDIPGVSHVINYELPNVPEQYVH 336
Query: 137 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 179
R GRT RAG +G AI +R+ ++ + + +FE + P
Sbjct: 337 RIGRTARAGADGIAIAFCAEDERQYLKDIRKTTDAEFERLPLP 379
>gi|409399600|ref|ZP_11249870.1| ATP-dependent RNA helicase [Acidocella sp. MX-AZ02]
gi|409131219|gb|EKN00931.1| ATP-dependent RNA helicase [Acidocella sp. MX-AZ02]
Length = 414
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 96/139 (69%), Gaps = 2/139 (1%)
Query: 37 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNG 95
KR +L L+ + KT+VFT+TKR AD V+L L +S I++ ALHG++SQ+QR+R L+
Sbjct: 236 KRNLLIKLLH-QPEFSKTVVFTRTKRGADRVALMLNSSKISAAALHGNLSQNQRQRALDA 294
Query: 96 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 155
F+ G+ LVATD+AARG+D+ V +I++ELPN+PE++VHR GRT R G +G A+
Sbjct: 295 FKAGEVRALVATDIAARGIDVNAVSHVINFELPNEPESYVHRIGRTARNGADGVAVAFCD 354
Query: 156 SSQRRTVRSLERDVGCKFE 174
+++ + +E+ G K +
Sbjct: 355 ATELPYLTQIEKLTGIKMK 373
>gi|295133956|ref|YP_003584632.1| DEAD/DEAH box helicase [Zunongwangia profunda SM-A87]
gi|294981971|gb|ADF52436.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Zunongwangia
profunda SM-A87]
Length = 598
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 137/252 (54%), Gaps = 20/252 (7%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+++F +TKRD +V+ L ++ ALHGD+SQ+QR+ + FR + +LVATDVAAR
Sbjct: 245 SVIFCRTKRDTQKVAERLIEDGYSAAALHGDLSQNQRDLVMKSFRTRQIQMLVATDVAAR 304
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+D+ ++ +I+Y+LP++ ET+ HRSGRTGRAGK GT++++ + S+ R ++S+ER +
Sbjct: 305 GIDVDDITHVINYQLPDEVETYTHRSGRTGRAGKLGTSMVIVSKSELRKIKSIERIIKQS 364
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHP----ESVEFFTPTAQRLIEEKGTDALAAAL- 227
F+ P +D+ + Q++ N + +E + P +++E+ + L
Sbjct: 365 FDEKQLPDGKDICKV---QLLHLANDIKDTEINHDIEEYLPNINKVLEDFTKEELIKKFF 421
Query: 228 -AQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSA--------RSVMGFLSDVY 278
+ + FS S ++ G + L +S +R FM+ S+ FL D
Sbjct: 422 SVEFTRFSNYYKKASDLSPVSGGANVDLDPNS--TRYFMNVGKKDGFDWMSLKDFLKDAL 479
Query: 279 PTAADEIGKIHI 290
D + K+ +
Sbjct: 480 QLGKDGVFKVDV 491
>gi|56461091|ref|YP_156372.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
gi|56180101|gb|AAV82823.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
Length = 594
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 111/195 (56%), Gaps = 3/195 (1%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGD 83
IK A +K T L+ L+ V + ++F +T++D +V+ L + + L GD
Sbjct: 222 IKQKAWKVQGMTKMTALTRLLEVTPYQ-RALIFVRTRQDTMDVAELLQRNGFKAAPLSGD 280
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q QRE+T++ R G +LV TDV ARGLD+P + +I+Y+LP+D E++VHR GRTGR
Sbjct: 281 LNQAQREQTVSQLRSGHIEILVGTDVVARGLDVPEITHVINYDLPSDTESYVHRIGRTGR 340
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AG+ G AIL F + +R +R ER EF P ++ + +Q++ L + PE
Sbjct: 341 AGRTGEAILFFRAKERHLLRHYERLTNAPVEFFEVPNANELSKYRQQQLLEKLQASLAPE 400
Query: 203 SVEFFTPTAQRLIEE 217
+ P ++L+ E
Sbjct: 401 TASADKPKLEKLLGE 415
>gi|52078994|ref|YP_077785.1| ATP-dependent RNA helicase YdbR [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|404487867|ref|YP_006711973.1| DEAD/DEAH box helicase [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|423680898|ref|ZP_17655737.1| ATP-dependent RNA helicase YdbR [Bacillus licheniformis WX-02]
gi|81691189|sp|Q65N62.1|CSHA_BACLD RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|52002205|gb|AAU22147.1| probable ATP-dependent RNA helicase YdbR [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|52346868|gb|AAU39502.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|383442004|gb|EID49713.1| ATP-dependent RNA helicase YdbR [Bacillus licheniformis WX-02]
Length = 487
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 110/187 (58%), Gaps = 4/187 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE++ AL +E +HGD++Q +R L F+QG VLVATDVAARG
Sbjct: 245 IVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARG 304
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++E+ K
Sbjct: 305 LDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTTKRKM 364
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ + P +++ +E + V + + E ++ F+ A L+E+ D++ A +
Sbjct: 365 DRMKAPTLDEAIEGQQQVTVDRIRTIIEENNLNFYMTAAAELLEDH--DSVTVVAAAIKM 422
Query: 233 FSRPPSS 239
++ P +
Sbjct: 423 MTKEPDN 429
>gi|366999310|ref|XP_003684391.1| hypothetical protein TPHA_0B02850 [Tetrapisispora phaffii CBS 4417]
gi|357522687|emb|CCE61957.1| hypothetical protein TPHA_0B02850 [Tetrapisispora phaffii CBS 4417]
Length = 628
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 109/190 (57%), Gaps = 10/190 (5%)
Query: 1 MLNYFVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQT 60
LN ++ S +VG+ E + + I LY K++ L DL+ G T++F +T
Sbjct: 368 FLNDYIFLSVG-RVGSTSENITQRI-LY---VEDMDKKSALLDLLAA-ENDGLTLIFVET 421
Query: 61 KRDADEVS--LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 118
KR ADE++ L + +A+ A+HGD +Q +RER L F+ G+ VLVAT VAARGLDIPN
Sbjct: 422 KRMADELTDFLIMQDFMAT-AIHGDRTQIERERALAAFKGGRANVLVATAVAARGLDIPN 480
Query: 119 VDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 178
V +I+Y+LP D + +VHR GRTGRAG G A F R V+ L D+ + P
Sbjct: 481 VTHVINYDLPTDIDDYVHRIGRTGRAGNTGVATSFFNRGNRNVVKGLN-DLLIEANQEVP 539
Query: 179 PVVEDVLESS 188
V DVL S
Sbjct: 540 DFVTDVLRES 549
>gi|121706879|ref|XP_001271659.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus clavatus
NRRL 1]
gi|134034088|sp|A1CH78.1|DED1_ASPCL RecName: Full=ATP-dependent RNA helicase ded1
gi|119399807|gb|EAW10233.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus clavatus
NRRL 1]
Length = 681
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 93/160 (58%), Gaps = 5/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + ++ KR++L D++ + G T++F +TKR AD
Sbjct: 411 VFLSVGRVGSTSENITQKVEY----VEDVDKRSVLLDILHTHGTSGLTLIFVETKRMADA 466
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S + + A+HGD +Q +RER L FR + +LVAT VAARGLDIPNV +I+Y
Sbjct: 467 LSDFLINQRFPATAIHGDRTQRERERALEMFRSARCPILVATAVAARGLDIPNVTHVINY 526
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP D + +VHR GRTGRAG G A F R VR L
Sbjct: 527 DLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVREL 566
>gi|302911254|ref|XP_003050452.1| hypothetical protein NECHADRAFT_71876 [Nectria haematococca mpVI
77-13-4]
gi|256731389|gb|EEU44739.1| hypothetical protein NECHADRAFT_71876 [Nectria haematococca mpVI
77-13-4]
Length = 688
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 96/160 (60%), Gaps = 6/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + ++ KR++L D++ +A GG T++F +TKR AD
Sbjct: 417 VFLSVGRVGSTSENITQKVEY----VEDVDKRSVLLDILHTHA-GGLTLIFVETKRMADS 471
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S + + ++HGD +Q +RER L FR G+ +LVAT VAARGLDIPNV +I+Y
Sbjct: 472 LSDFLINQNFPATSIHGDRTQRERERALEFFRNGRCPILVATAVAARGLDIPNVTHVINY 531
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP D + +VHR GRTGRAG G A F R VR L
Sbjct: 532 DLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVREL 571
>gi|254294585|ref|YP_003060608.1| DEAD/DEAH box helicase [Hirschia baltica ATCC 49814]
gi|254043116|gb|ACT59911.1| DEAD/DEAH box helicase domain protein [Hirschia baltica ATCC 49814]
Length = 769
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 91/148 (61%), Gaps = 4/148 (2%)
Query: 53 KTIVFTQTKRDADEV-SLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111
+ +VFT+TK AD+V S + + I A+HG+ SQ QRER LN FR G VLVATD+AA
Sbjct: 247 RALVFTRTKHGADKVVSKLMNAGIRCGAIHGNKSQAQRERALNAFRNGDSKVLVATDIAA 306
Query: 112 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 171
RG+D+P V + +YE+PN PE +VHR GRT RAG+EG AI + +++ + ++R +
Sbjct: 307 RGIDVPGVSHVFNYEIPNVPEQYVHRIGRTARAGREGKAISFVSRDEKKYLLDIQRQIRM 366
Query: 172 KFEFVSPPVVEDVLESSAEQVVATLNGV 199
K V P + AE++ A V
Sbjct: 367 KIPIVDLP---EGFIDQAEEITANATPV 391
>gi|150017770|ref|YP_001310024.1| DEAD/DEAH box helicase [Clostridium beijerinckii NCIMB 8052]
gi|149904235|gb|ABR35068.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
NCIMB 8052]
Length = 524
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 135/247 (54%), Gaps = 19/247 (7%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TKR+ DE+ L +E +HGD++Q+QR TL F++G L+ATDVAARG
Sbjct: 247 IIFCKTKRNVDELVEGLQGRGYTAEGMHGDMNQNQRINTLRKFKEGSLEFLIATDVAARG 306
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ NV +I+Y+LP D E++VHR GRTGRA ++G A + T+ + +++ +E+ K
Sbjct: 307 IDVENVTHVINYDLPQDVESYVHRIGRTGRANRKGVAYTLVTAREYMSLKHIEKVTKSKI 366
Query: 174 EFVSPPVVEDVLESSAEQVVATLN-GVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
P V+++ S + + + + + +S + F P A L EE +AAAL +
Sbjct: 367 RRREIPTVDEIFVSKYKNMFSKIKETLEQDSYKKFIPMATELDEEFNLVEVAAALMDMV- 425
Query: 233 FSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSA--------RSVMGFLSDVYPTAADE 284
+S+ +N++ + ++ + + R F++ R ++ F ++ ++
Sbjct: 426 YSKE------VNYD--YTENEIGSKTDYKRLFLNVGRLDKINPRKLVDFFNENAKVKRED 477
Query: 285 IGKIHII 291
+G I I+
Sbjct: 478 VGDIDIL 484
>gi|319951635|ref|YP_004162902.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM
14237]
gi|319420295|gb|ADV47404.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM
14237]
Length = 633
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 105/165 (63%), Gaps = 2/165 (1%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+++F +TKRD +V+ +L + ALHGD+SQ+QR+ ++ FR+ + +LVATDVAAR
Sbjct: 245 SVIFCRTKRDTQKVAESLIEDGYNAGALHGDLSQNQRDLVMSSFRKKQIQILVATDVAAR 304
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+D+ ++ +I+Y+LP++ ET+ HRSGRTGRAGK G ++++ T S+ R ++++E +G K
Sbjct: 305 GIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIITRSELRKIKAIENKIGQK 364
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHPES-VEFFTPTAQRLIE 216
F + P ++ E + + + VE + P ++ E
Sbjct: 365 FITKNIPTGMEICEIQLYHLANKIKDTEVNAEVETYLPAINKVFE 409
>gi|315499118|ref|YP_004087922.1| dead/deah box helicase domain-containing protein [Asticcacaulis
excentricus CB 48]
gi|315417130|gb|ADU13771.1| DEAD/DEAH box helicase domain protein [Asticcacaulis excentricus CB
48]
Length = 605
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 95/149 (63%), Gaps = 6/149 (4%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYA--KGGKTIVFTQTKRDADEVSLALTSI-IASE 78
AE + I KR +LS+L YA K +T++FT+TKR AD V+ L + + +
Sbjct: 217 AERVTQQVIFIEQQRKRALLSEL---YADEKLARTLIFTRTKRGADRVAAYLQAGGVEAA 273
Query: 79 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS 138
A+HGD +Q QRER L F+ G+ LVATD+AARG+D+ NV +I+YELP E +VHR
Sbjct: 274 AIHGDKNQSQRERALQAFKAGRVRALVATDIAARGIDVDNVTHVINYELPFVAEAYVHRI 333
Query: 139 GRTGRAGKEGTAILMFTSSQRRTVRSLER 167
GRT RAGKEG +I + +R+ ++ +ER
Sbjct: 334 GRTARAGKEGHSITLVADDERKLLKDIER 362
>gi|113971754|ref|YP_735547.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-4]
gi|113886438|gb|ABI40490.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
Length = 622
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 121/244 (49%), Gaps = 14/244 (5%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTA---------TSKRTILSDLITVYAKGGK--TI 55
M +V N+ K A I + A TT S+ L L+ V I
Sbjct: 189 MPEQIKRVANKHLKDATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVENTEGII 248
Query: 56 VFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 114
+F +T+ E++ L + AS LHGD++Q RER + + GK +L+ATDVAARGL
Sbjct: 249 IFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKLDILIATDVAARGL 308
Query: 115 DIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 174
D+ + +++Y++P D E +VHR GRTGRAG+ G AIL TS + R +R++ER +
Sbjct: 309 DVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNSRIS 368
Query: 175 FVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIE--EKGTDALAAALAQLSG 232
+ P E V E ++ L + ++F +L + E TD LAAAL
Sbjct: 369 PMKVPSPETVAERRLSRLGEQLAQTMTQDLDFMREAVAQLCQQLEVDTDLLAAALLHQVQ 428
Query: 233 FSRP 236
RP
Sbjct: 429 QERP 432
>gi|343510603|ref|ZP_08747826.1| cold-shock DEAD-box protein A [Vibrio scophthalmi LMG 19158]
gi|342801572|gb|EGU37032.1| cold-shock DEAD-box protein A [Vibrio scophthalmi LMG 19158]
Length = 679
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 113/187 (60%), Gaps = 4/187 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T++D + ++ L++ + ALHGDI Q RERT++ + G +LVATDV AR
Sbjct: 248 SIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKTGVIDILVATDVVAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ +Q R +R++ER +
Sbjct: 308 GLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRGNQIRMLRTIERVTRSQ 367
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTDA--LAAALAQ 229
E + P+ + V E+ ++ A L +++E F ++L E DA LAA L +
Sbjct: 368 MEEIQLPMRDQVAEARLIKLGAELEAEKEHKALEKFVELVEKLQESLEIDANTLAAMLLK 427
Query: 230 LSGFSRP 236
RP
Sbjct: 428 RQQGKRP 434
>gi|328855473|gb|EGG04599.1| hypothetical protein MELLADRAFT_78286 [Melampsora larici-populina
98AG31]
Length = 646
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 98/160 (61%), Gaps = 5/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + ++ KR++L D++T +GG T+VF +TKR AD
Sbjct: 381 IFLSVGRVGSTSENITQKVEY----VEDADKRSVLLDILTSMPQGGLTLVFVETKRMADM 436
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+ ++S A+ ++HGD +Q +RER L FR + ++VAT VAARGLDIPNV +++Y
Sbjct: 437 LEGFLVSSNFAATSIHGDRTQRERERALETFRSSRTPIMVATAVAARGLDIPNVTHVVNY 496
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP+D + +VHR GRTGRAG G + F + VR L
Sbjct: 497 DLPSDIDDYVHRIGRTGRAGNTGVSTAFFNRGNKNIVREL 536
>gi|134046209|ref|YP_001097694.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
maripaludis C5]
gi|132663834|gb|ABO35480.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
C5]
Length = 541
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 96/146 (65%), Gaps = 1/146 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
++F +TK D DEVS L A+E LHGD++Q QRE+TL+ F+ K VLVATDVAARG
Sbjct: 245 LIFCKTKADVDEVSSRLNEKGYAAEGLHGDMTQAQREKTLDKFKGRKINVLVATDVAARG 304
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+DI ++ +++Y++P +PE++VHR GRTGRAGK+G A+ S+ R + +++ +
Sbjct: 305 IDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKFKYIQKIAKTEI 364
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGV 199
P V+D++ + ++V+ + V
Sbjct: 365 RKEEVPDVKDIIGAKKRKIVSGIKEV 390
>gi|398334959|ref|ZP_10519664.1| ATP-dependent RNA helicase [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 531
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 107/183 (58%), Gaps = 9/183 (4%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VF TK D V L S +EALHGD++Q QR++ +NGFR G +LVATDVA RG
Sbjct: 252 LVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMNGFRNGSIEILVATDVAGRG 311
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ NV+ + +Y+LP D E +VHR GRTGRAGK+G A Q ++ +ER G K
Sbjct: 312 IDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKKIERINGIKI 371
Query: 174 EFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA-LAAALA 228
E P ++D+ + S E+V + ++ H + + ++L+ + T +AAAL
Sbjct: 372 ELGKIPTLDDLEETKIHSYTEKVRSIVDAGH---IGNYVNQVEKLMGDDYTALDIAAALF 428
Query: 229 QLS 231
+++
Sbjct: 429 KMT 431
>gi|381395882|ref|ZP_09921576.1| ATP-dependent RNA helicase DeaD [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379328447|dbj|GAB56709.1| ATP-dependent RNA helicase DeaD [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 584
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
IVF +TK E++ L++ EAL+GDI+Q RERT+ +QGK +LVATDVAAR
Sbjct: 249 VIVFVRTKTATLELAEKLSARGYDVEALNGDIAQAARERTVERLKQGKIDILVATDVAAR 308
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+ V +I+Y++P+D E++VHR GRTGRAG++G AIL + ++R + ++ER +
Sbjct: 309 GLDVERVSHVINYDVPHDTESYVHRVGRTGRAGRKGDAILFISHREKRMLFAIERATKQE 368
Query: 173 FEFVSPPVVEDVLESSAEQV-VATLNGVHPESVEFFTPTAQRLIEEK--GTDALAAALAQ 229
+ P + ++ ES + + ++ + ES+E + P + +I E + + AALA+
Sbjct: 369 ITMMEIPSIGELNESRLGRFKKSVIDALAHESIESYMPVIEAIIRESEASPEMVMAALAK 428
Query: 230 LSGFSRP 236
++ + P
Sbjct: 429 VAQGNEP 435
>gi|315648503|ref|ZP_07901602.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
gi|315276197|gb|EFU39543.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
Length = 536
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 105/183 (57%), Gaps = 7/183 (3%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE++ AL +++ LHGD+SQHQR+ + FR G VLVATDVAARG
Sbjct: 244 IVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLVATDVAARG 303
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ V +++++LP DPE++VHR GRTGRAGKEGTA T + + +ER +
Sbjct: 304 LDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLYFIERVTRHRI 363
Query: 174 EFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 229
P + + +E AE+V+ + E E+ Q L + LAAA+
Sbjct: 364 PRKPLPTIAEAIEGKQRIIAERVLEIIE--QGELTEYKGLAIQLLEQYDSVQLLAAAMKI 421
Query: 230 LSG 232
L+G
Sbjct: 422 LTG 424
>gi|163789144|ref|ZP_02183587.1| putative RNA helicase dead-box protein [Flavobacteriales bacterium
ALC-1]
gi|159875557|gb|EDP69618.1| putative RNA helicase dead-box protein [Flavobacteriales bacterium
ALC-1]
Length = 638
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 100/148 (67%), Gaps = 4/148 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+++F +TKRD +V+ L ++ ALHGD+SQ+QR+ + FR + +LVATDVAAR
Sbjct: 245 SVIFCRTKRDTQKVAENLIEDGYSAGALHGDLSQNQRDIVMKSFRNKQIQMLVATDVAAR 304
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+D+ ++ +I+Y+LP++ ET+ HRSGRTGRAGK G ++++ + S+ R ++S+ER + +
Sbjct: 305 GIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIVSKSETRKIKSIERIIKKQ 364
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVH 200
FE P ++ E Q+++ N +H
Sbjct: 365 FEQKEIPSGMEICEV---QLMSLANKIH 389
>gi|346223602|ref|ZP_08844744.1| dead/deah box helicase domain protein [Anaerophaga thermohalophila
DSM 12881]
Length = 542
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 109/171 (63%), Gaps = 13/171 (7%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T+++ +++ L + +++LHG++SQ QR++ + FR+ +LVATDVAAR
Sbjct: 244 SIVFCRTRQETKDIANKLIADGYNADSLHGELSQGQRDQVMGRFRKKHLQILVATDVAAR 303
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+ ++ +IHY LP+DPE +VHRSGRTGRAGK G ++ + T+ + + ++ LER + +
Sbjct: 304 GLDVTDLTHVIHYHLPDDPENYVHRSGRTGRAGKSGISVAIITNGELKKIKMLERQI--R 361
Query: 173 FEFVSPPVVE--DVLESSAEQVVATLNGVHPESVEFFTPTAQR---LIEEK 218
FV PV + DV ++ + +L ES++ P + LIEEK
Sbjct: 362 KTFVRKPVPKGMDVFQTRLANYIVSL-----ESMDVHNPVLEELPALIEEK 407
>gi|269104706|ref|ZP_06157402.1| cold-shock DEAD-box protein A [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268161346|gb|EEZ39843.1| cold-shock DEAD-box protein A [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 647
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 118/392 (30%), Positives = 182/392 (46%), Gaps = 38/392 (9%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T++D + ++ L + + ALHGDI Q RERT+ ++G +LVATDV AR
Sbjct: 248 SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVEHIKRGVIDILVATDVVAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P + + +Y++P D E+++HR GRTGRAG+EG AIL+ ++Q R +R++ER +
Sbjct: 308 GLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGREGKAILLVRTNQIRMLRTIERVTKSR 367
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHPES-VEFFTPTAQRLIEEKGTDA--LAAALAQ 229
E + P+ + V E+ ++ L +S VE F ++L E DA LAA L Q
Sbjct: 368 MEEIQLPLRDAVAEARLNRLAKELEAQKEQSSVEAFVELVEKLQESIEVDAATLAAMLLQ 427
Query: 230 LSGFSRP-------PSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAA 282
+RP P +L +Q RD R F + + T
Sbjct: 428 RQQGNRPLFYKGPDPMIAALERDKQRRDRRGNDRDRGERGERGERRERRTFNAADWDTYQ 487
Query: 283 DEIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGNTI---SKITKLPA 330
++G+ I V GA+ F ++A E Q+P T +++ KL
Sbjct: 488 LQVGREQGIQVKDVVGAIANELGLNKDFIGAIKLAPEHTYVQLPKKMTAEVAAQLKKLRI 547
Query: 331 LQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRS---------- 380
Q++ + G R R GG +R G RGG RG +R G R
Sbjct: 548 RQNEVKAVVVDGEVL---REHRRGGRDGNRDGNRGGYRGNRDGNRDGNREGGRGRRDGER 604
Query: 381 --SRSWGSDDEDGFSSSRGGRSFRSGNNRGSR 410
R+ G D+ + R R+ +N G R
Sbjct: 605 RFDRNRGGDNRGTYRGERNHGGDRNNSNGGER 636
>gi|402493532|ref|ZP_10840283.1| DEAD/DEAH box helicase [Aquimarina agarilytica ZC1]
Length = 600
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 114/187 (60%), Gaps = 11/187 (5%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
++F +TKRD ++ L ++ ALHGD+SQ+QR+ + FR + +LVATDVAARG
Sbjct: 246 VIFCRTKRDTQSIAEKLIEDGYSAAALHGDLSQNQRDLVMKSFRNRQIQMLVATDVAARG 305
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ ++ +I+Y+LP++ ET+ HRSGRTGRAGKEG +I++ T S R ++SLER + F
Sbjct: 306 IDVNDITHVINYQLPDENETYNHRSGRTGRAGKEGVSIVITTKSDVRKIKSLERTLQTTF 365
Query: 174 EFVSPPVVEDV----LESSAEQVVAT-LNGVHPESVEFFTPTAQRLIEEKGTDALAAALA 228
E + P +++ L + AE++ T +N + V+ + P +E + L L
Sbjct: 366 EQKTVPTGKEICKIQLFNLAEKIETTEIN----DEVDEYLPEINSHLEHLSKEELIKKLV 421
Query: 229 QLSGFSR 235
+ F+R
Sbjct: 422 TVE-FTR 427
>gi|260591877|ref|ZP_05857335.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
veroralis F0319]
gi|260536161|gb|EEX18778.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
veroralis F0319]
Length = 657
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 114/187 (60%), Gaps = 6/187 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+++E AE + A K L L+ Y K IVF +TK + E++ L
Sbjct: 231 VGSRNEG-AESVNHIYYMVNARDKYLALKRLVDFYPKI-YAIVFCRTKVETQEIADKLIK 288
Query: 74 I-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+E+LHGD+SQ QR+ T+ FR +LVATDVAARGLD+ ++ +I+Y LP+D E
Sbjct: 289 DGYNAESLHGDLSQQQRDLTMQKFRSHLTQILVATDVAARGLDVNDLTHVINYGLPDDIE 348
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+ HRSGRTGRAGK+GT+I + S ++ VR++ER++G +F + P E++ + +Q+
Sbjct: 349 NYTHRSGRTGRAGKKGTSISIIHSREKYKVRNIEREIGKEFIDGTLPSPEEICK---KQL 405
Query: 193 VATLNGV 199
T++ +
Sbjct: 406 FKTMDNI 412
>gi|429729511|ref|ZP_19264170.1| cold-shock DEAD-box protein A [Corynebacterium durum F0235]
gi|429149535|gb|EKX92513.1| cold-shock DEAD-box protein A [Corynebacterium durum F0235]
Length = 677
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 95/138 (68%), Gaps = 1/138 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK + +E++ L + ++ A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 312 IMFVRTKHETEELAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 371
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + +++Y++P+D E++VHR GRTGRAG+ G AIL T +RR +RS+ER
Sbjct: 372 LDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNATL 431
Query: 174 EFVSPPVVEDVLESSAEQ 191
+ P V++V ES E+
Sbjct: 432 VEMELPTVDEVNESRKEK 449
>gi|429748406|ref|ZP_19281601.1| cold-shock DEAD-box protein A family protein [Capnocytophaga sp.
oral taxon 332 str. F0381]
gi|429171163|gb|EKY12800.1| cold-shock DEAD-box protein A family protein [Capnocytophaga sp.
oral taxon 332 str. F0381]
Length = 577
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 106/177 (59%), Gaps = 4/177 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
++VF +TKRD V+ L + ALHGD+SQ+QR+ + FR + +LVATDVAAR
Sbjct: 245 SVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQIQMLVATDVAAR 304
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+D+ ++ +IHY+LP++ ET+ HRSGRTGRAGK G ++++ S+ R ++ +ER +G
Sbjct: 305 GIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVILPKSEIRKIKEIERVIGQH 364
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNG--VHPESVEFFTPTAQRLIEEKGTDALAAAL 227
FE P ++ E + L V+P+ +E + P + +++ + L +
Sbjct: 365 FEQKQLPTGIEICEIQLYHLANNLKNVEVNPD-IEDYLPAIHKELQDLDRETLVKKI 420
>gi|218768426|ref|YP_002342938.1| ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
gi|121052434|emb|CAM08770.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
Length = 457
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 99/170 (58%), Gaps = 3/170 (1%)
Query: 5 FVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDA 64
F+ + +V QD A ++ + I+ KR +L LI V + IVF +TK+
Sbjct: 205 FMNAPETVEVAAQDTTNA-NVEQHIIAVDTIQKRNLLERLI-VDLHMNQVIVFCKTKQSV 262
Query: 65 DEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 123
D V+ L ++++A+HGD SQ R TLN F+ G VLVATD+AARGLDI + +I
Sbjct: 263 DRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLRVLVATDIAARGLDIAELPFVI 322
Query: 124 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+YE+P PE +VHR GRTGRAG +G AI + S+++ S++ G K
Sbjct: 323 NYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESIKELTGNKL 372
>gi|335040306|ref|ZP_08533437.1| DEAD/DEAH box helicase domain protein [Caldalkalibacillus thermarum
TA2.A1]
gi|334179782|gb|EGL82416.1| DEAD/DEAH box helicase domain protein [Caldalkalibacillus thermarum
TA2.A1]
Length = 457
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/208 (37%), Positives = 117/208 (56%), Gaps = 3/208 (1%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ Y + K IL L+ + + IVF +TKR DE+S AL +E +HGD
Sbjct: 215 IEQYYLEVQEKQKFDILCRLLDLESPE-LAIVFGRTKRRVDELSEALKRRGYLAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
+SQ +R++ +N FR G +LVATDVAARGLDI V + ++++P DPE +VHR GRTGR
Sbjct: 274 LSQARRDQVINLFRTGSIDILVATDVAARGLDIQGVTHVCNFDIPQDPENYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE- 202
AG+ G AI + ++++E + K E P + +VL+ + + L V E
Sbjct: 334 AGQTGKAITFVVPRELDHLKTIEHLIRRKLEKKRIPTISEVLKGRQQAAMERLLRVAEEG 393
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQL 230
++ F AQ L+EE+ + L AA +L
Sbjct: 394 DLQVFQRMAQALLEEQDSVTLVAAALKL 421
>gi|319648702|ref|ZP_08002913.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. BT1B_CT2]
gi|317389121|gb|EFV69937.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. BT1B_CT2]
Length = 516
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 110/187 (58%), Gaps = 4/187 (2%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE++ AL +E +HGD++Q +R L F+QG VLVATDVAARG
Sbjct: 225 IVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARG 284
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++E+ K
Sbjct: 285 LDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTTKRKM 344
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ + P +++ +E + V + + E ++ F+ A L+E+ D++ A +
Sbjct: 345 DRMKAPTLDEAIEGQQQVTVDRIRTIIEENNLNFYMTAAAELLEDH--DSVTVVAAAIKM 402
Query: 233 FSRPPSS 239
++ P +
Sbjct: 403 MTKEPDN 409
>gi|403385798|ref|ZP_10927855.1| ATP-dependent RNA helicase exp9 [Kurthia sp. JC30]
Length = 511
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 123/220 (55%), Gaps = 12/220 (5%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI--IA 76
E + I+ + + + K ILS L+ V K IVF +TKR DE+S AL SI
Sbjct: 209 ELTVDNIEQFFVKSQEREKFDILSRLLNV-QKPELAIVFGRTKRRVDELSHAL-SIRGYI 266
Query: 77 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 136
+E +HGD+SQ +R L F++ K VLVATDVAARGLDI V + ++++P DPE++VH
Sbjct: 267 AEGIHGDLSQAKRLSVLRQFKENKIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVH 326
Query: 137 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL----ESSAEQV 192
R GRTGRAGK G A+ T + +R +E + + PP ++ L E + EQ+
Sbjct: 327 RIGRTGRAGKSGVAVTFVTPREMSYLRIVEETTKKRMTPLKPPTADEALVGQQEVAVEQL 386
Query: 193 VATLNGVHPESVEFFTPTAQRLIEE-KGTDALAAALAQLS 231
A + H + + A+ L+++ D +AAA+ L+
Sbjct: 387 KAIVEKNH---LSNYRQMAEELLKDGDAVDFVAAAIKSLT 423
>gi|299822345|ref|ZP_07054231.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601]
gi|299815874|gb|EFI83112.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601]
Length = 512
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 125/230 (54%), Gaps = 11/230 (4%)
Query: 8 FSHSTQVG--NQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDAD 65
F HS ++ E A I+ + + K +LS L+ V A I+F +TKR D
Sbjct: 198 FMHSPELVRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPE-LAIIFGRTKRRVD 256
Query: 66 EVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 124
E+S AL +E +HGD++Q +R L F++GK VLVATDVAARGLDI V + +
Sbjct: 257 ELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDISGVTHVYN 316
Query: 125 YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 184
Y++P DPE++VHR GRTGRAGKEG AI + +R +E + E + PP ++
Sbjct: 317 YDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRMEPLKPPTWDEA 376
Query: 185 ----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQL 230
L + E++ + E++ + A +L+E+ +AAA+ ++
Sbjct: 377 FAGQLRVAQEKIE---EAITQENLADYAVFAGQLLEKYDATDIAAAMLKM 423
>gi|298369527|ref|ZP_06980844.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria sp.
oral taxon 014 str. F0314]
gi|298282084|gb|EFI23572.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria sp.
oral taxon 014 str. F0314]
Length = 456
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 94/147 (63%), Gaps = 2/147 (1%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGD 83
++ + I+ A KR +L LI V + + IVF +TK+ D+V+ L +A++++HGD
Sbjct: 223 VEQHIIAVDALKKRNLLERLI-VDLQMNQVIVFCKTKQSVDQVTRDLVRRNLAAQSIHGD 281
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
SQ R TLN F++G VLVATDVAARGLDI + +I+YELP PE +VHR GRTGR
Sbjct: 282 KSQQSRLETLNAFKEGSLRVLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGR 341
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVG 170
AG +G AI + ++++ +++ G
Sbjct: 342 AGADGVAISLMDKTEQKMFEAIKELTG 368
>gi|336233335|ref|YP_004590081.1| ATP-dependent RNA helicase [Buchnera aphidicola (Cinara
tujafilina)]
gi|335345276|gb|AEH39822.1| ATP-dependent RNA helicase [Buchnera aphidicola (Cinara
tujafilina)]
Length = 603
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 108/188 (57%), Gaps = 6/188 (3%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
TI+F +TK EV+ L AL+GD++Q RE+TL+ R GK +L+ATDVAAR
Sbjct: 247 TIIFVKTKSATLEVADVLEKNGYNCAALNGDMNQSLREQTLDRLRNGKLDILIATDVAAR 306
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+ + +I+Y++P D E++VHR GRTGRAG+ G A+L + +RR +R++ER V
Sbjct: 307 GLDVDRISFVINYDIPMDAESYVHRIGRTGRAGRTGRALLFVENRERRLLRNIERIVKLT 366
Query: 173 FEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALA 228
V P E + L+ +E++ LN E P +L E + L+AAL
Sbjct: 367 IPEVILPKSELLSQRRLQKFSEKIQKELNSPDLEEYRLLLPKF-KLKEPVNFEKLSAALL 425
Query: 229 QLSGFSRP 236
+L+ RP
Sbjct: 426 KLAQGERP 433
>gi|430812755|emb|CCJ29835.1| unnamed protein product [Pneumocystis jirovecii]
Length = 631
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 95/154 (61%), Gaps = 5/154 (3%)
Query: 13 QVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS-LAL 71
+VG+ E + + I+ K+++L D++ +GG T++F +TKR AD +S L
Sbjct: 384 RVGSTSENITQKIEY----VEDMDKKSVLLDILHSMPRGGLTLIFVETKRMADTLSDFLL 439
Query: 72 TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 131
+S + ++HGD +Q +RE+ L FR G+ ++VAT VAARGLDIPNV +I+Y+LP D
Sbjct: 440 SSNFPATSIHGDRTQREREKALEMFRGGRTPIMVATAVAARGLDIPNVTHVINYDLPTDI 499
Query: 132 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+ +VHR GRTGRAG G + F R VR L
Sbjct: 500 DDYVHRIGRTGRAGNTGISTAFFNRGNRSIVRDL 533
>gi|398384210|ref|ZP_10542256.1| DNA/RNA helicase, superfamily II [Sphingobium sp. AP49]
gi|397723230|gb|EJK83737.1| DNA/RNA helicase, superfamily II [Sphingobium sp. AP49]
Length = 578
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 143/299 (47%), Gaps = 16/299 (5%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I AI+ + + +L+ Y + I+F T+ + + +LT A+ AL G+
Sbjct: 218 ISYQAITVAPSDIENAVVNLLR-YHEAETAILFCATRDNVRHLHSSLTERGFAAVALSGE 276
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
SQ++R L R + V VATDVAARG+D+P++ L++H ELP D ET HRSGRTGR
Sbjct: 277 HSQNERNHALQALRDKRARVCVATDVAARGIDLPSLTLVVHVELPRDAETMQHRSGRTGR 336
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 203
AGK+GTA+L+ +RR V S+ R E+ +PP E +LE ++ +TL E
Sbjct: 337 AGKKGTAVLIVPYPRRRRVESMLRGAKIPVEWGTPPSKEAILEQDNARLRSTLME-KAEL 395
Query: 204 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHE---------QGWVTLQL 254
E L+ EK +AA L + + S P L E G+ Q
Sbjct: 396 DEADWALGAELLAEKSAKEIAAMLVKSARASLPAPEELLDRSEAPPRQDGPRPGFEDTQW 455
Query: 255 TRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313
R R R ++ + + +IG I I ++ +F++P+ IA L+
Sbjct: 456 FRMDIGRRQNADPRWILPLICRRGHVSRGDIGAIRITTNE----TMFEIPKAIASRFLS 510
>gi|375132206|ref|YP_005048614.1| ATP-dependent RNA helicase DeaD [Vibrio furnissii NCTC 11218]
gi|315181381|gb|ADT88294.1| ATP-dependent RNA helicase DeaD [Vibrio furnissii NCTC 11218]
Length = 632
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 109/187 (58%), Gaps = 4/187 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LVATDV AR
Sbjct: 248 SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++ER
Sbjct: 308 GLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 367
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDA--LAAALAQ 229
E + P + V E+ Q+ L S+E F ++L DA LAA L +
Sbjct: 368 MEEIQLPHRDKVAEARLSQLAIELEAEKEHASLEKFAELVEKLQASLEIDANTLAAILLK 427
Query: 230 LSGFSRP 236
RP
Sbjct: 428 RQQGKRP 434
>gi|119773652|ref|YP_926392.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
gi|119766152|gb|ABL98722.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
Length = 637
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 124/242 (51%), Gaps = 20/242 (8%)
Query: 2 LNYFVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTK 61
+N + SH+T E I+ + + +K L ++ V G I+F +T+
Sbjct: 206 VNISIAASHTT---------VESIEQRFVQVSQHNKLEALVRVLEVENTEG-IIIFVRTR 255
Query: 62 RDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 120
E++ L + A+ LHGD++Q RER ++ + GK +L+ATDVAARGLD+ +
Sbjct: 256 NSCMELAEKLEARGYAASPLHGDMNQQARERAVDQLKSGKLDILIATDVAARGLDVERIG 315
Query: 121 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV 180
+++Y++P D E +VHR GRTGRAG+ G AIL TS + R +R++ER + + P
Sbjct: 316 HVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNSRISPMKIPS 375
Query: 181 VEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIE--EKGTDALAAALAQLSGFS 234
E V E EQV L H ++F +L + E T+ LAAAL
Sbjct: 376 PESVAERRLSRLGEQVADILANEH---LDFMKGAVAQLCQQLEVDTEQLAAALLHQVQLE 432
Query: 235 RP 236
RP
Sbjct: 433 RP 434
>gi|383811987|ref|ZP_09967434.1| DEAD/DEAH box helicase / helicase C-terminal domain / DbpA RNA
binding domain multi-domain protein [Prevotella sp. oral
taxon 306 str. F0472]
gi|383355373|gb|EID32910.1| DEAD/DEAH box helicase / helicase C-terminal domain / DbpA RNA
binding domain multi-domain protein [Prevotella sp. oral
taxon 306 str. F0472]
Length = 633
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 114/187 (60%), Gaps = 6/187 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+++E AE + A K L L+ Y K IVF +TK + E++ L
Sbjct: 207 VGSRNEG-AESVNHIYYMVNARDKYLALKRLVDFYPKI-YAIVFCRTKVETQEIADKLIK 264
Query: 74 I-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+E+LHGD+SQ QR+ T+ FR +LVATDVAARGLD+ ++ +I+Y LP+D E
Sbjct: 265 DGYNAESLHGDLSQQQRDLTMQKFRSHLTQILVATDVAARGLDVNDLTHVINYGLPDDIE 324
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+ HRSGRTGRAGK+GT+I + S ++ VR++ER++G +F + P E++ + +Q+
Sbjct: 325 NYTHRSGRTGRAGKKGTSISIIHSREKYKVRNIEREIGKEFIDGTLPSPEEICK---KQL 381
Query: 193 VATLNGV 199
T++ +
Sbjct: 382 FKTMDNI 388
>gi|406668916|ref|ZP_11076207.1| hypothetical protein HMPREF9707_00110 [Facklamia ignava CCUG 37419]
gi|405585197|gb|EKB59032.1| hypothetical protein HMPREF9707_00110 [Facklamia ignava CCUG 37419]
Length = 547
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 121/226 (53%), Gaps = 6/226 (2%)
Query: 5 FVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDA 64
F+ Q+ Q + A+ I Y + K IL+ I ++ + I+F +TK+
Sbjct: 196 FLRHPQHVQIEAQ-QMTADLIDQYFTKCSDGEKFDILTRFIDIH-NPKQAIIFCRTKKRV 253
Query: 65 DEVS--LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 122
DEV LAL A E +HGDI+Q +R + + G +LVATDVAARGLDI V +
Sbjct: 254 DEVGRGLALRGYNA-EMIHGDITQQKRTSVIKELKDGVLEILVATDVAARGLDISGVTHV 312
Query: 123 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 182
+Y++P DPE++VHR GRTGRAGKEG +I T ++ ++++E+ + + PP +
Sbjct: 313 YNYDIPQDPESYVHRIGRTGRAGKEGMSITFVTHNEMAYLKTIEQLTRIQMMPMRPPTSK 372
Query: 183 DVLESSAEQVVATLN-GVHPESVEFFTPTAQRLIEEKGTDALAAAL 227
+ +Q++ +N + E + TA+ L+E + L AL
Sbjct: 373 EAQHGQIQQLIDRMNLTLQSEEADALRNTAKMLLEHYEVNDLVTAL 418
>gi|407770302|ref|ZP_11117672.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Thalassospira xiamenensis M-5 = DSM 17429]
gi|407286580|gb|EKF12066.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Thalassospira xiamenensis M-5 = DSM 17429]
Length = 609
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 107/170 (62%), Gaps = 11/170 (6%)
Query: 1 MLNYFVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLI--TVYAKGGKTIVFT 58
ML+ V S T V E++ + + Y I KR +L++L+ ++ + T+VFT
Sbjct: 201 MLSDPVKVS-VTPVATTQERVEQSV--YMIEKN--RKRQLLAELLDNPLFKR---TLVFT 252
Query: 59 QTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 117
+TKR AD V+ L S I++ A+HG+ SQ+QRER LN F+ G+ VLVATD+AARG+D+
Sbjct: 253 RTKRGADRVARHLESCKISAAAIHGNKSQNQRERALNAFKDGQIGVLVATDIAARGIDVD 312
Query: 118 NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 167
V ++++ELPN PE++VHR GRT R G G+AI +R +R +E+
Sbjct: 313 GVTHVVNFELPNVPESYVHRIGRTARGGASGSAIAFCDEEERGLLRDIEK 362
>gi|425461891|ref|ZP_18841365.1| putative RNA helicase [Microcystis aeruginosa PCC 9808]
gi|443648367|ref|ZP_21129987.1| DEAD/DEAH box helicase family protein [Microcystis aeruginosa
DIANCHI905]
gi|159030016|emb|CAO90397.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389825195|emb|CCI25254.1| putative RNA helicase [Microcystis aeruginosa PCC 9808]
gi|443335213|gb|ELS49690.1| DEAD/DEAH box helicase family protein [Microcystis aeruginosa
DIANCHI905]
Length = 479
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 118/210 (56%), Gaps = 10/210 (4%)
Query: 26 KLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDI 84
K+Y I T K +L L+ + I+F +TK+ A E++ L + HG++
Sbjct: 219 KIYMIPRGWT-KLKVLQPLLEIEPLES-AIIFVRTKQTAAELTSKLQEAGQTVDEYHGNL 276
Query: 85 SQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 144
SQ QRER + FR+GK ++VATD+AARGLD+ N+ +I+Y+LP++ ET++HR GRTGRA
Sbjct: 277 SQVQRERLVQRFREGKIKLVVATDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRA 336
Query: 145 GKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVH 200
GK GTAI + RR +R +E+ + + E P +V L Q+ L+G
Sbjct: 337 GKTGTAISLVEPIDRRLLRQIEQRLRQRLESSPIPSRTEVEAKRLAKLQNQLKEALSG-- 394
Query: 201 PESVEFFTPTAQRLIEEKGTDALAAALAQL 230
E + F P + L EE A+AAA Q+
Sbjct: 395 -ERMASFLPLVRDLSEEYDPQAIAAAALQM 423
>gi|386712716|ref|YP_006179038.1| DEAD/DEAH box helicase [Halobacillus halophilus DSM 2266]
gi|384072271|emb|CCG43761.1| DEAD-box ATP-dependent RNA helicase CshA [Halobacillus halophilus
DSM 2266]
Length = 490
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 125/218 (57%), Gaps = 8/218 (3%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 77
E E I+ Y + K L+ L+ ++ IVF +TKR DEV+ L + ++
Sbjct: 208 EMTVENIEQYFVEIPEKHKFDTLTRLLDIH-DPALAIVFGRTKRRVDEVADGLQARGFSA 266
Query: 78 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
E +HGD++Q +R TLN F++G+ +LVATDVAARGLDI V + ++++P DPE++VHR
Sbjct: 267 EGIHGDLTQGKRMSTLNKFKRGRIEILVATDVAARGLDISEVSHVYNFDIPQDPESYVHR 326
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT-- 195
GRTGRAG++G +I T ++ + +E+ K E + P E+ S +Q VA
Sbjct: 327 IGRTGRAGRKGESISFVTPREKDQLNLIEKLTKKKVERLKVPSSEEA--SRGQQKVAVDK 384
Query: 196 -LNGVHPESVEFFTPTAQRLIEE-KGTDALAAALAQLS 231
+ + ++ + +A L+E+ +D +AAAL ++
Sbjct: 385 LVESLGANDLKNYKHSANELLEQYDSSDIIAAALKMMT 422
>gi|386002133|ref|YP_005920432.1| ATP-dependent RNA helicase [Methanosaeta harundinacea 6Ac]
gi|357210189|gb|AET64809.1| ATP-dependent RNA helicase, putative [Methanosaeta harundinacea
6Ac]
Length = 418
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 89/125 (71%), Gaps = 1/125 (0%)
Query: 53 KTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111
+ +VFT+TKR AD V+ LT S I ++A+HGD +Q+QR L GF+ G+ VLVATD+AA
Sbjct: 246 RVLVFTRTKRRADRVAKVLTRSGIRADAIHGDRTQNQRLAALRGFKAGRLQVLVATDIAA 305
Query: 112 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 171
RG+D+ ++ +I+Y+LPN+PE++VHR GRTGRAG+ GTA ++ +R +R +ER
Sbjct: 306 RGIDVEDISHVINYDLPNEPESYVHRIGRTGRAGRAGTAYSFCSAEERSFLRDIERLTRT 365
Query: 172 KFEFV 176
K V
Sbjct: 366 KIREV 370
>gi|345860075|ref|ZP_08812402.1| DEAD-box ATP-dependent RNA helicase cshA domain protein
[Desulfosporosinus sp. OT]
gi|344326819|gb|EGW38270.1| DEAD-box ATP-dependent RNA helicase cshA domain protein
[Desulfosporosinus sp. OT]
Length = 536
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 92/142 (64%), Gaps = 1/142 (0%)
Query: 52 GKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 110
G+ I+F +TKR DE+ AL + ++ LHGD+SQ QR+R + FR GK +LVATDVA
Sbjct: 247 GQGIIFCRTKRGVDELVAALEARGYFADGLHGDLSQQQRDRVMKRFRDGKSELLVATDVA 306
Query: 111 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 170
ARGLDI NV +I++++P DP ++VHR GRTGR G++G AI + + + R +R +E +
Sbjct: 307 ARGLDINNVTHVINFDIPQDPVSYVHRIGRTGRVGRKGQAITLISPKEYRQLRLIENLIK 366
Query: 171 CKFEFVSPPVVEDVLESSAEQV 192
+ P + D+ E AE +
Sbjct: 367 TRIRRQELPSLADISERQAENL 388
>gi|117922031|ref|YP_871223.1| DEAD/DEAH box helicase [Shewanella sp. ANA-3]
gi|117614363|gb|ABK49817.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
Length = 619
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 121/244 (49%), Gaps = 14/244 (5%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTA---------TSKRTILSDLITVYAKGGK--TI 55
M +V N+ K A I + A TT S+ L L+ V I
Sbjct: 189 MPEQIKRVANKHLKDATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVENTEGII 248
Query: 56 VFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 114
+F +T+ E++ L + AS LHGD++Q RER + + GK +L+ATDVAARGL
Sbjct: 249 IFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKLDILIATDVAARGL 308
Query: 115 DIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 174
D+ + +++Y++P D E +VHR GRTGRAG+ G AIL TS + R +R++ER +
Sbjct: 309 DVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNSRIS 368
Query: 175 FVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIE--EKGTDALAAALAQLSG 232
+ P E V E ++ L + ++F +L + E TD LAAAL
Sbjct: 369 PMKVPSPETVAERRLSRLGEQLAQTMTQDLDFMREAVAQLCQQLEVDTDLLAAALLHQVQ 428
Query: 233 FSRP 236
RP
Sbjct: 429 QERP 432
>gi|402298055|ref|ZP_10817779.1| ATP-dependent RNA helicase [Bacillus alcalophilus ATCC 27647]
gi|401726699|gb|EJS99915.1| ATP-dependent RNA helicase [Bacillus alcalophilus ATCC 27647]
Length = 534
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 117/200 (58%), Gaps = 12/200 (6%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK+ E++ AL + ++ LHGD++Q QR+ + FR L+ATDVAARG
Sbjct: 243 ILFCRTKKGVAELTEALQARGYLADGLHGDLTQSQRDSVMKKFRDSSIEFLIATDVAARG 302
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ NV +I+Y++P DPE++VHR GRTGRAG++G A+ + T + + +RS+E ++
Sbjct: 303 IDVDNVTHVINYDIPQDPESYVHRIGRTGRAGRQGLALTLVTPREMKHLRSIEHEIKMSI 362
Query: 174 EFVSPPVVEDVLE----SSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 229
P +E+V+E S ++V T+ E + F+P + ++E + + +AL +
Sbjct: 363 PSQDVPTIEEVVEKQHDSWKKRVTDTIEARGKE-FDLFSPLVKEILEVHSPEDVVSALLK 421
Query: 230 LSGFSRPPSSRSLINHEQGW 249
++ + P N E G+
Sbjct: 422 MNFSTETP------NEEAGY 435
>gi|317059228|ref|ZP_07923713.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_5R]
gi|313684904|gb|EFS21739.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_5R]
Length = 528
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 109/179 (60%), Gaps = 2/179 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK D +EV L +E LHGDI Q+ RE TL F+ K +LVATDVAARG
Sbjct: 250 IVFCRTKTDVNEVVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKAKKINILVATDVAARG 309
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ ++ +I+Y +P + E++VHR GRTGRAGKEGTAI T + R + +++ V +
Sbjct: 310 IDVNDLSHVINYAIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQIQKIVKTEI 369
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALAAALAQLS 231
P V+DV+++ Q+ ++ + E + F AQ L++++ + + ++L +L+
Sbjct: 370 RKEEVPEVKDVIQAKKFQIQKDIDEILGEGEYDKFKKLAQDLLKKEEAENIVSSLLKLA 428
>gi|433460289|ref|ZP_20417922.1| DEAD/DEAH box helicase [Halobacillus sp. BAB-2008]
gi|432191745|gb|ELK48677.1| DEAD/DEAH box helicase [Halobacillus sp. BAB-2008]
Length = 470
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 125/218 (57%), Gaps = 8/218 (3%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 77
E E I+ + + K L+ L+ ++ IVF +TKR DEV+ L + ++
Sbjct: 189 EMTVENIEQFFVEIPEKHKFDTLTRLLDIH-DPSLAIVFGRTKRRVDEVADGLQARGFSA 247
Query: 78 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
E +HGD++Q +R TLN F++G+ +LVATDVAARGLDI +V + ++++P DPE++VHR
Sbjct: 248 EGIHGDLTQGKRMSTLNKFKRGRIEILVATDVAARGLDISDVTHVYNFDIPQDPESYVHR 307
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT-- 195
GRTGRAG++G +I T ++ + +E+ K E + P E+ + +Q VA
Sbjct: 308 IGRTGRAGRKGKSISFVTPREKDQLHLIEKITKKKVERLKVPSSEEA--ARGQQKVAVEK 365
Query: 196 -LNGVHPESVEFFTPTAQRLIEEK-GTDALAAALAQLS 231
L + ++ + A L+++ TD +AAAL ++
Sbjct: 366 LLEMIEKNDLKNYKQAADELLQQHDSTDLIAAALKMMT 403
>gi|340759001|ref|ZP_08695578.1| ATP-dependent RNA helicase [Fusobacterium varium ATCC 27725]
gi|251835856|gb|EES64394.1| ATP-dependent RNA helicase [Fusobacterium varium ATCC 27725]
Length = 527
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 107/176 (60%), Gaps = 3/176 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TK D ++V L +E LHGDISQ+ RE TL F+ K VLVATDVAARG
Sbjct: 247 IVFCRTKNDVNDVVGKLNDRGYDAEGLHGDISQNYREVTLKRFKAKKINVLVATDVAARG 306
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ ++ +I+Y +P + E++VHR GRTGRAGKEGTAI T + R + +++ V +
Sbjct: 307 IDVNDLSHVINYSIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQIQKIVKTEI 366
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIE-EKGTDALAAAL 227
P V+DV+++ ++V LN + E + + F ++ L+ E D +AA +
Sbjct: 367 RKEKVPGVKDVIQAKKFRLVEELNHILAENNFDNFKDLSRELLNGEDAVDIVAALI 422
>gi|354580517|ref|ZP_08999422.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
gi|353202948|gb|EHB68397.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
Length = 529
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 106/183 (57%), Gaps = 7/183 (3%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE++ AL +++ LHGD+SQHQR+ + FR G VLVATDVAARG
Sbjct: 244 IVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLVATDVAARG 303
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ V +++++LP DPE++VHR GRTGRAGKEGTA T + + +ER +
Sbjct: 304 LDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLYFIERVTRHRI 363
Query: 174 EFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 229
P + + +E AE+V+ ++ E E+ Q L + LAAA+
Sbjct: 364 PRKPLPTMAEAIEGKQRVIAERVLEIID--QGELTEYKGLAIQLLEQYDSVQLLAAAMKL 421
Query: 230 LSG 232
L+G
Sbjct: 422 LTG 424
>gi|384170944|ref|YP_005552321.1| DEAD-box ATP dependent DNA helicase [Arcobacter sp. L]
gi|345470554|dbj|BAK72004.1| DEAD-box ATP dependent DNA helicase [Arcobacter sp. L]
Length = 511
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 87/133 (65%), Gaps = 1/133 (0%)
Query: 53 KTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111
K+I+F +TK++ D +S L S ++ LHGD+ Q QRE + F+ K +L+ATDVAA
Sbjct: 238 KSIIFCRTKKEVDRLSTFLVSQGFMAKGLHGDMEQRQREEAIRAFKTSKLEILIATDVAA 297
Query: 112 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 171
RGLD+ +V + +Y LP D E++VHR GRTGRAGKEG AI + T + R ++ +E+++G
Sbjct: 298 RGLDVNDVTHVFNYHLPFDSESYVHRIGRTGRAGKEGVAISIVTPHEFRMLQKIEKNIGT 357
Query: 172 KFEFVSPPVVEDV 184
K E P + V
Sbjct: 358 KLEAKIVPNISSV 370
>gi|335356475|ref|ZP_08548345.1| ATP-dependent RNA helicase [Lactobacillus animalis KCTC 3501]
Length = 503
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 118/210 (56%), Gaps = 10/210 (4%)
Query: 28 YAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHGDISQ 86
Y + K I++ ++ V A TIVF +TKR DE+S L + + A +HGD+SQ
Sbjct: 217 YFVKVRDYEKFDIMTRILDVQA-PELTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLSQ 275
Query: 87 HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 146
+R L F++GK +LVATDVAARGLDI V + +Y++P DPE++VHR GRTGRAG+
Sbjct: 276 QRRMSILKRFKEGKLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGR 335
Query: 147 EGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP----- 201
G ++ T ++ +R +ER + + + PP E E+ QV + L+ V
Sbjct: 336 HGVSVTFVTPNEMDYLRVIERLTKKRMDPLRPPTEE---EAFVGQVSSALDDVKELVAKT 392
Query: 202 ESVEFFTPTAQRLIEEKGTDALAAALAQLS 231
E+ ++ T + L E D +AA L ++
Sbjct: 393 ETSKYETQAKELLAEYDDVDLVAALLNNMT 422
>gi|336126222|ref|YP_004578178.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
gi|335343939|gb|AEH35221.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
Length = 672
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 114/187 (60%), Gaps = 4/187 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T++D + ++ L S + ALHGDI Q RERT++ +QG +LVATDV AR
Sbjct: 248 SIVFVRTRQDTERLADWLLSRGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++ER +
Sbjct: 308 GLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSQ 367
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHPES-VEFFTPTAQRLIEEKGTDA--LAAALAQ 229
E + P+ + V E+ ++ A L + ++ F ++L + DA LAA L +
Sbjct: 368 MEEIQLPMRDKVAEARLIKLGAELEADKGHTALDKFVELIEKLQQSLEIDATTLAAILLK 427
Query: 230 LSGFSRP 236
+RP
Sbjct: 428 RQQGNRP 434
>gi|389576917|ref|ZP_10166945.1| DNA/RNA helicase, superfamily II [Eubacterium cellulosolvens 6]
gi|389312402|gb|EIM57335.1| DNA/RNA helicase, superfamily II [Eubacterium cellulosolvens 6]
Length = 524
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/116 (50%), Positives = 84/116 (72%), Gaps = 1/116 (0%)
Query: 53 KTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111
+TI+FT+TK AD V+ LT S IA++A+HGD +Q QR+ TL G++ G F VLVATDVA+
Sbjct: 242 RTIIFTRTKHGADRVARNLTRSGIAAKAIHGDKTQGQRQSTLEGYKAGHFHVLVATDVAS 301
Query: 112 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 167
RGLDIP V +I++ LP +PE ++HR GRTGRAG+ G AI + + ++ +E+
Sbjct: 302 RGLDIPEVSHVINFNLPQEPEAYIHRIGRTGRAGESGIAITLCEEDEMDLLKEVEK 357
>gi|269962576|ref|ZP_06176923.1| ATP-dependent RNA helicase DeaD [Vibrio harveyi 1DA3]
gi|269832689|gb|EEZ86801.1| ATP-dependent RNA helicase DeaD [Vibrio harveyi 1DA3]
Length = 644
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 112/187 (59%), Gaps = 4/187 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +LVATDV AR
Sbjct: 248 SIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++ER
Sbjct: 308 GLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSS 367
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTD--ALAAALAQ 229
E + P+ + V E+ ++ A L +S++ F ++L D LAA L +
Sbjct: 368 MEEIQLPLRDQVAEARLSKLAAELEAEKEHKSLDKFAELVEKLQTSLEIDPAMLAAMLLK 427
Query: 230 LSGFSRP 236
RP
Sbjct: 428 RQQGKRP 434
>gi|335428790|ref|ZP_08555700.1| putative ATP-dependent RNA helicase [Haloplasma contractile
SSD-17B]
gi|335430826|ref|ZP_08557712.1| putative ATP-dependent RNA helicase [Haloplasma contractile
SSD-17B]
gi|334887366|gb|EGM25698.1| putative ATP-dependent RNA helicase [Haloplasma contractile
SSD-17B]
gi|334891731|gb|EGM29977.1| putative ATP-dependent RNA helicase [Haloplasma contractile
SSD-17B]
Length = 528
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 89/146 (60%), Gaps = 1/146 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF TKR+ DE+ + L +EALHGD+ Q QR+R +N FR +LVATDVAARG
Sbjct: 246 IVFCNTKREVDELVVRLQEHNYMTEALHGDLKQQQRDRVMNSFRNKNIKILVATDVAARG 305
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ NV+ + +Y++P D E +VHR GRTGRAG+ G + Q ++S+ER + K
Sbjct: 306 IDVNNVEAVFNYDIPLDDEAYVHRIGRTGRAGQSGASYTFINPKQFHRLKSIERYIKHKI 365
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGV 199
+ S P V+D+ +S + + +
Sbjct: 366 DKGSIPTVKDIQDSKLRDLYLEMKNI 391
>gi|166365637|ref|YP_001657910.1| ATP-dependent RNA helicase [Microcystis aeruginosa NIES-843]
gi|166088010|dbj|BAG02718.1| ATP-dependent RNA helicase [Microcystis aeruginosa NIES-843]
Length = 479
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 118/210 (56%), Gaps = 10/210 (4%)
Query: 26 KLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDI 84
K+Y I T K +L L+ + I+F +TK+ A E++ L + HG++
Sbjct: 219 KIYLIPRGWT-KLKVLQPLLEIEPLES-AIIFVRTKQTAAELTSKLQEAGQTVDEYHGNL 276
Query: 85 SQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 144
SQ QRER + FR+GK ++VATD+AARGLD+ N+ +I+Y+LP++ ET++HR GRTGRA
Sbjct: 277 SQVQRERLVQRFREGKIKLVVATDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRA 336
Query: 145 GKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVH 200
GK GTAI + RR +R +E+ + + E P +V L Q+ L+G
Sbjct: 337 GKTGTAISLVEPIDRRLLRQIEQRLRQRLESSPIPSRTEVEAKRLAKLQNQLKEALSG-- 394
Query: 201 PESVEFFTPTAQRLIEEKGTDALAAALAQL 230
E + F P + L EE A+AAA Q+
Sbjct: 395 -ERMASFLPLVRDLSEEYDPQAIAAAALQM 423
>gi|422302445|ref|ZP_16389808.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9806]
gi|425454118|ref|ZP_18833865.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9807]
gi|389788317|emb|CCI16072.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9806]
gi|389805290|emb|CCI14994.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9807]
Length = 479
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 118/210 (56%), Gaps = 10/210 (4%)
Query: 26 KLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDI 84
K+Y I T K +L L+ + I+F +TK+ A E++ L + HG++
Sbjct: 219 KIYLIPRGWT-KLKVLQPLLEIEPLES-AIIFVRTKQTAAELTSKLQEAGQTVDEYHGNL 276
Query: 85 SQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 144
SQ QRER + FR+GK ++VATD+AARGLD+ N+ +I+Y+LP++ ET++HR GRTGRA
Sbjct: 277 SQVQRERLVQRFREGKIKLVVATDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRA 336
Query: 145 GKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVH 200
GK GTAI + RR +R +E+ + + E P +V L Q+ L+G
Sbjct: 337 GKTGTAISLVEPIDRRLLRQIEQRLRQRLESSPIPSRTEVEAKRLAKLQNQLKEALSG-- 394
Query: 201 PESVEFFTPTAQRLIEEKGTDALAAALAQL 230
E + F P + L EE A+AAA Q+
Sbjct: 395 -ERMASFLPLVRDLSEEYDPQAIAAAALQM 423
>gi|260777273|ref|ZP_05886167.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450]
gi|260606939|gb|EEX33213.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450]
Length = 641
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 113/187 (60%), Gaps = 4/187 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LVATDV AR
Sbjct: 248 SIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++ER
Sbjct: 308 GLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSS 367
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTDA--LAAALAQ 229
E + P+ + V E+ ++ A L +S+E F ++L + DA LAA L +
Sbjct: 368 MEEIQLPLRDKVAEARLVKLGAELEQEKEHKSLEKFGELVEKLQDALEIDAATLAAILLK 427
Query: 230 LSGFSRP 236
RP
Sbjct: 428 RQQGKRP 434
>gi|189467630|ref|ZP_03016415.1| hypothetical protein BACINT_04020 [Bacteroides intestinalis DSM
17393]
gi|189435894|gb|EDV04879.1| DEAD/DEAH box helicase [Bacteroides intestinalis DSM 17393]
Length = 482
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 97/138 (70%), Gaps = 2/138 (1%)
Query: 37 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNG 95
K+ +L+ L+ A G + +VF++TK AD ++ L+ IA E++HGD SQ+ R+R L+
Sbjct: 235 KKELLAQLLLGEA-GHQVLVFSRTKHGADNIARYLSRRGIACESIHGDKSQNARQRALSN 293
Query: 96 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 155
F++G+ V++ATD+AARG+DI +DL+++++LP+ PET+VHR GRTGRAG EG AI +
Sbjct: 294 FKEGRSNVIIATDIAARGIDIKGLDLVLNFDLPDVPETYVHRIGRTGRAGCEGRAIAFCS 353
Query: 156 SSQRRTVRSLERDVGCKF 173
S + +R +E+ G K
Sbjct: 354 SEEAPMLREIEKLTGIKL 371
>gi|410452638|ref|ZP_11306602.1| ATP-dependent RNA helicase [Bacillus bataviensis LMG 21833]
gi|409934120|gb|EKN71036.1| ATP-dependent RNA helicase [Bacillus bataviensis LMG 21833]
Length = 496
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 110/183 (60%), Gaps = 8/183 (4%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ Y + +K +L+ L+ + + IVF +TKR DE+S ALT +E +HGD
Sbjct: 215 IEQYYLEVQERNKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALTLRGYTAEGIHGD 273
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q +R L F++G +LVATDVAARGLDI V + ++++P DPE++VHR GRTGR
Sbjct: 274 LTQAKRMSVLRKFKEGTIDILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE----SSAEQVVATL--N 197
AGK+G A+ T ++ + +ER K E + P +++ LE + E++V T+ N
Sbjct: 334 AGKKGIALTFITPREKSYLAVVERTTKHKMEKMKAPTLDEALEGQQKAVVEKIVQTIESN 393
Query: 198 GVH 200
+H
Sbjct: 394 NLH 396
>gi|425436507|ref|ZP_18816943.1| putative RNA helicase [Microcystis aeruginosa PCC 9432]
gi|425451380|ref|ZP_18831202.1| putative RNA helicase [Microcystis aeruginosa PCC 7941]
gi|440752520|ref|ZP_20931723.1| DEAD/DEAH box helicase family protein [Microcystis aeruginosa
TAIHU98]
gi|389678768|emb|CCH92412.1| putative RNA helicase [Microcystis aeruginosa PCC 9432]
gi|389767364|emb|CCI07225.1| putative RNA helicase [Microcystis aeruginosa PCC 7941]
gi|440177013|gb|ELP56286.1| DEAD/DEAH box helicase family protein [Microcystis aeruginosa
TAIHU98]
Length = 479
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 118/210 (56%), Gaps = 10/210 (4%)
Query: 26 KLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDI 84
K+Y I T K +L L+ + I+F +TK+ A E++ L + HG++
Sbjct: 219 KIYLIPRGWT-KLKVLQPLLEIEPLES-AIIFVRTKQTAAELTSKLQEAGQTVDEYHGNL 276
Query: 85 SQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 144
SQ QRER + FR+GK ++VATD+AARGLD+ N+ +I+Y+LP++ ET++HR GRTGRA
Sbjct: 277 SQVQRERLVQRFREGKIKLVVATDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRA 336
Query: 145 GKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVH 200
GK GTAI + RR +R +E+ + + E P +V L Q+ L+G
Sbjct: 337 GKTGTAISLVEPIDRRLLRQIEQRLRQRLESSPIPSRTEVEAKRLAKLQNQLKEALSG-- 394
Query: 201 PESVEFFTPTAQRLIEEKGTDALAAALAQL 230
E + F P + L EE A+AAA Q+
Sbjct: 395 -ERMASFLPLVRDLSEEYDPQAIAAAALQM 423
>gi|256830240|ref|YP_003158968.1| DEAD/DEAH box helicase [Desulfomicrobium baculatum DSM 4028]
gi|256579416|gb|ACU90552.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
DSM 4028]
Length = 530
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 104/177 (58%), Gaps = 2/177 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VFT+TK DAD VS L ++ LHGD+SQ RE+ L F++ T+LVATDVAARG
Sbjct: 245 LVFTRTKIDADAVSQRLMERGYEADTLHGDMSQSLREKMLIKFKKKLVTILVATDVAARG 304
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ ++ +I+++LP+DPE +VHR GRTGRAGK+G AI T S+ R ++ + +
Sbjct: 305 IDVHDLTHVINFDLPHDPEAYVHRIGRTGRAGKQGIAITFITPSEYRRLQFISKHARTDI 364
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPESVEF-FTPTAQRLIEEKGTDALAAALAQ 229
P V DV++ ++ A L + E F AQ L+++ AAL Q
Sbjct: 365 RKARLPKVADVIDMKKGRIRAELQEIMTTEPELEFMGMAQELLDQSKPRETLAALLQ 421
>gi|425446720|ref|ZP_18826721.1| putative RNA helicase [Microcystis aeruginosa PCC 9443]
gi|389732942|emb|CCI03221.1| putative RNA helicase [Microcystis aeruginosa PCC 9443]
Length = 479
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 118/210 (56%), Gaps = 10/210 (4%)
Query: 26 KLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDI 84
K+Y I T K +L L+ + I+F +TK+ A E++ L + HG++
Sbjct: 219 KIYMIPRGWT-KLKVLQPLLEIEPLES-AIIFVRTKQTAAELTSKLQEAGQTVDEYHGNL 276
Query: 85 SQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 144
SQ QRER + FR+GK ++VATD+AARGLD+ N+ +I+Y+LP++ ET++HR GRTGRA
Sbjct: 277 SQVQRERLVQRFREGKIKLVVATDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRA 336
Query: 145 GKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVH 200
GK GTAI + RR +R +E+ + + E P +V L Q+ L+G
Sbjct: 337 GKTGTAISLVEPIDRRLLRQIEQRLRQRLESSPIPSRTEVEAKRLTKLQNQLKEALSG-- 394
Query: 201 PESVEFFTPTAQRLIEEKGTDALAAALAQL 230
E + F P + L EE A+AAA Q+
Sbjct: 395 -ERMASFLPLVRDLSEEYDPQAIAAAALQM 423
>gi|407794038|ref|ZP_11141068.1| ATP-dependent RNA helicase [Idiomarina xiamenensis 10-D-4]
gi|407213891|gb|EKE83744.1| ATP-dependent RNA helicase [Idiomarina xiamenensis 10-D-4]
Length = 605
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 107/195 (54%), Gaps = 3/195 (1%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I+ A + K T L+ L+ + +VF +T++D EV+ L + AL+GD
Sbjct: 222 IRQLAWQVSVLHKMTALTRLLETM-DYQRVLVFVRTRQDTMEVAEQLQGQGFKAAALNGD 280
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q QRE+T+N R G +LVATDV ARGLD+P + +I+Y+LP D E++VHR GRTGR
Sbjct: 281 LNQAQREQTVNQLRSGHIEILVATDVVARGLDVPEITHVINYDLPGDHESYVHRIGRTGR 340
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPE 202
AG+ G AIL F +R ++ ER + E+ P + +Q++ L V +
Sbjct: 341 AGRSGEAILFFRPRERHLLKHYERATNSRIEYFEVPTAAQLSSHRQQQLLKKLTANVEQQ 400
Query: 203 SVEFFTPTAQRLIEE 217
+ Q+++ E
Sbjct: 401 DLTQMQTLLQQMVSE 415
>gi|402223504|gb|EJU03568.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 644
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 97/160 (60%), Gaps = 5/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + I+ KR+ L D++T + G T++F +TKR AD
Sbjct: 387 IFLSVGRVGSTSENITQRIEF----VEDHDKRSYLLDILTAEGQNGLTLIFVETKRMADM 442
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S + S I + ++HGD +Q +RE+ L FR G+ ++VAT VAARGLDIPNV +I+Y
Sbjct: 443 LSDFLMGSSIPATSIHGDRTQREREQALATFRSGRTPIMVATAVAARGLDIPNVMHVINY 502
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP+D + +VHR GRTGRAG G A F R VR L
Sbjct: 503 DLPSDIDDYVHRIGRTGRAGNTGIATAFFNRGNRNIVRDL 542
>gi|425442860|ref|ZP_18823096.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9717]
gi|425467451|ref|ZP_18846734.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9809]
gi|389715972|emb|CCH99724.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9717]
gi|389829775|emb|CCI28639.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9809]
Length = 479
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 118/210 (56%), Gaps = 10/210 (4%)
Query: 26 KLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDI 84
K+Y I T K +L L+ + I+F +TK+ A E++ L + HG++
Sbjct: 219 KIYLIPRGWT-KLKVLQPLLEIEPLES-AIIFVRTKQTAAELTSKLQEAGQTVDEYHGNL 276
Query: 85 SQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 144
SQ QRER + FR+GK ++VATD+AARGLD+ N+ +I+Y+LP++ ET++HR GRTGRA
Sbjct: 277 SQVQRERLVQRFREGKIKLVVATDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRA 336
Query: 145 GKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVH 200
GK GTAI + RR +R +E+ + + E P +V L Q+ L+G
Sbjct: 337 GKTGTAISLVEPIDRRLLRQIEQRLRQRLESSPIPSRTEVEAKRLAKLQNQLKEALSG-- 394
Query: 201 PESVEFFTPTAQRLIEEKGTDALAAALAQL 230
E + F P + L EE A+AAA Q+
Sbjct: 395 -ERMASFLPLVRDLSEEYDPQAIAAAALQM 423
>gi|345022779|ref|ZP_08786392.1| ATP-dependent RNA helicase [Ornithinibacillus scapharcae TW25]
Length = 490
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 111/187 (59%), Gaps = 9/187 (4%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF++TK+ DE++ L + SE +HGD++Q +R LN F+ G+ VLVATDVAARG
Sbjct: 244 IVFSRTKKRVDEITEGLQARGFRSEGIHGDLTQGKRMSVLNKFKNGRVDVLVATDVAARG 303
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAG+ G AI T + +R +E+ K
Sbjct: 304 LDISGVTHVYNFDIPQDPESYVHRIGRTGRAGRTGEAISFITPREMAHLRLIEKVTKSKM 363
Query: 174 EFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEK-GTDALAAALA 228
+ + PP ++ + + E+++AT + ++ + TA L+EE +AAAL
Sbjct: 364 KRMVPPTNKEARIGQQQITVEKILAT---IEKNELDAYHQTANDLLEEHDSVTIVAAALK 420
Query: 229 QLSGFSR 235
L+ R
Sbjct: 421 MLTKTRR 427
>gi|398848835|ref|ZP_10605629.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM84]
gi|398246946|gb|EJN32419.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM84]
Length = 561
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 108/177 (61%), Gaps = 1/177 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I F +TK+ +++ AL + + AL+GDI+Q+QRER ++ + G+ ++VATDVAARG
Sbjct: 249 IAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAARG 308
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+P + + + ++P DPE++VHR GRTGRAG+EG A+L+ T +RR ++ +ER G K
Sbjct: 309 LDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQKV 368
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQL 230
P + VL++ +++ +L + ES RL + G A A A A L
Sbjct: 369 AEARLPNAQAVLDARIKKLTMSLAPLVAESEATHGELFDRLTADLGCSARALASALL 425
>gi|170720663|ref|YP_001748351.1| DEAD/DEAH box helicase [Pseudomonas putida W619]
gi|169758666|gb|ACA71982.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
Length = 559
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 110/176 (62%), Gaps = 3/176 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I F +TK+ +++ AL + + AL+GDI+Q+QRER ++ + G+ ++VATDVAARG
Sbjct: 249 IAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAARG 308
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+P + + + ++P DPE++VHR GRTGRAG+EG A+L+ T +RR ++ +ER G K
Sbjct: 309 LDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQKV 368
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD--ALAAAL 227
P + VL++ +++ ++L + E+ RL E G AL+AAL
Sbjct: 369 AEARLPNAQAVLDARIKKLTSSLAPLVAEAEATHGELFDRLTEALGCSPRALSAAL 424
>gi|375263387|ref|YP_005025617.1| cold-shock DEAD-box protein A [Vibrio sp. EJY3]
gi|369843814|gb|AEX24642.1| cold-shock DEAD-box protein A [Vibrio sp. EJY3]
Length = 639
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 112/187 (59%), Gaps = 4/187 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +LVATDV AR
Sbjct: 248 SIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++ER
Sbjct: 308 GLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSS 367
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTD--ALAAALAQ 229
E + P+ + V E+ Q+ A L +S++ F ++L D LAA L +
Sbjct: 368 MEEIQLPLRDQVAEARLAQLGAELEAEKEHKSLDKFAELVEKLQTSLEIDPAMLAAMLLK 427
Query: 230 LSGFSRP 236
RP
Sbjct: 428 RQQGKRP 434
>gi|115398049|ref|XP_001214616.1| ATP-dependent RNA helicase ded1 [Aspergillus terreus NIH2624]
gi|121737954|sp|Q0CLJ6.1|DED1_ASPTN RecName: Full=ATP-dependent RNA helicase ded1
gi|114192807|gb|EAU34507.1| ATP-dependent RNA helicase ded1 [Aspergillus terreus NIH2624]
Length = 674
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 93/160 (58%), Gaps = 5/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + ++ KR++L D++ + G T++F +TKR AD
Sbjct: 408 VFLSVGRVGSTSENITQKVEY----VEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADS 463
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S L + A+HGD +Q +RER L FR G+ +LVAT VAA GLDIPNV +I+Y
Sbjct: 464 LSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAASGLDIPNVTHVINY 523
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP D + +VHR GRTGRAG G A F R VR L
Sbjct: 524 DLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDL 563
>gi|307352826|ref|YP_003893877.1| DEAD/DEAH box helicase domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307156059|gb|ADN35439.1| DEAD/DEAH box helicase domain protein [Methanoplanus petrolearius
DSM 11571]
Length = 536
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 110/186 (59%), Gaps = 5/186 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+++F TK+ DE+S L S +E LHGD+ Q QR+R ++ FR G +L+ATDVAAR
Sbjct: 247 SMIFCNTKKAVDELSEMLRSRGYFAEGLHGDMKQQQRDRVMSRFRSGSIDILIATDVAAR 306
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+DI ++D++ +Y++P D E ++HR GRTGRAGK G + + + +R +++
Sbjct: 307 GIDIDDIDVVYNYDVPQDVEYYIHRIGRTGRAGKSGMSYTFVSPKEIYKLRMIKKIAKVN 366
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGT-DALAAAL--A 228
++ P DV S E+V+ + ++ E + + P +RL+EE T ++AAL
Sbjct: 367 IVRIAIPNAADVENSRIEKVLDRVKSIINEEDIGLYIPAVERLMEEDYTLSEISAALLKI 426
Query: 229 QLSGFS 234
QL G S
Sbjct: 427 QLEGSS 432
>gi|260770312|ref|ZP_05879245.1| cold-shock DEAD-box protein A [Vibrio furnissii CIP 102972]
gi|260615650|gb|EEX40836.1| cold-shock DEAD-box protein A [Vibrio furnissii CIP 102972]
Length = 632
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 109/187 (58%), Gaps = 4/187 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LVATDV AR
Sbjct: 248 SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++ER
Sbjct: 308 GLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 367
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDA--LAAALAQ 229
E + P + V E+ Q+ L S+E F ++L DA LAA L +
Sbjct: 368 MEEIQLPHRDKVAEARLSQLAIELEAEKEHASLEKFAELVEKLQVSLEIDANTLAAILLK 427
Query: 230 LSGFSRP 236
RP
Sbjct: 428 RQQGKRP 434
>gi|302874235|ref|YP_003842868.1| DEAD/DEAH box helicase [Clostridium cellulovorans 743B]
gi|307689501|ref|ZP_07631947.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
cellulovorans 743B]
gi|302577092|gb|ADL51104.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans
743B]
Length = 536
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 106/179 (59%), Gaps = 2/179 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK+ DE+ ++ E +HGD++Q+QR TL F++ LVATDVAARG
Sbjct: 248 IIFCKTKKGVDELVSSMQRRGYVVEGMHGDMNQNQRMNTLKKFKESNLDFLVATDVAARG 307
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ NV +I+Y+LP D E++VHR GRTGRA KEG A + T + ++ +E+ K
Sbjct: 308 IDVENVTHVINYDLPQDAESYVHRIGRTGRANKEGKAYTLVTPREYIVLKQIEKTTKSKI 367
Query: 174 EFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 231
+ S P V+++ + + V+ + + + E + F P A L ++ +AAAL +++
Sbjct: 368 KRNSVPTVDEIYDVKYKNVLNKVRDTIENEDLSKFIPYATELDDDYSLVDVAAALMKIA 426
>gi|227528896|ref|ZP_03958945.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis
ATCC 49540]
gi|227351170|gb|EEJ41461.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis
ATCC 49540]
Length = 501
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 120/217 (55%), Gaps = 11/217 (5%)
Query: 28 YAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHGDISQ 86
Y + K I++ LI V TIVF +TKR DE+S L + + A +HGD+SQ
Sbjct: 217 YYVKARDYEKFDIMTRLIDV-QDPDLTIVFGRTKRRVDELSRGLVARGYNAAGIHGDLSQ 275
Query: 87 HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 146
+R + + F+ G+ +LVATDVAARGLDI V + +Y++P+DP+++VHR GRTGRAG
Sbjct: 276 DRRTKIMKKFKHGELDILVATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGH 335
Query: 147 EGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP----E 202
G ++ T ++ +R +E+ + + PP E+ + QV + N + +
Sbjct: 336 HGVSLTFVTPNEMDYLREIEKLTRVRMLPLKPPTAEEAFKG---QVASAFNDIDELISQD 392
Query: 203 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 239
S E + A++L+ L AAL L+ ++ P+S
Sbjct: 393 STERYQEAAEKLLATHDATDLVAAL--LNEMTKEPAS 427
>gi|408410488|ref|ZP_11181699.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus sp. 66c]
gi|408410709|ref|ZP_11181911.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus sp. 66c]
gi|409351244|ref|ZP_11234042.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
equicursoris CIP 110162]
gi|407875110|emb|CCK83717.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus sp. 66c]
gi|407875331|emb|CCK83505.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus sp. 66c]
gi|407876877|emb|CCK86100.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
equicursoris CIP 110162]
Length = 483
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 116/212 (54%), Gaps = 2/212 (0%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASE 78
E A+ I Y + K I+ LI V +VF +TKR DE++ L + +
Sbjct: 208 ELTADLIDQYFVRVRENEKFDIMCRLIDV-ENPDLAVVFGRTKRRVDELTRGLQARGYNA 266
Query: 79 A-LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
A +HGD++Q +R + L F++GK +LVATDVAARGLDI V + +Y++P DP+++VHR
Sbjct: 267 AGIHGDLTQAKRMQVLKRFKEGKLDILVATDVAARGLDISGVTHVYNYDIPQDPDSYVHR 326
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN 197
GRTGRAGK G ++ T ++ +R++E K + PP +Q V ++
Sbjct: 327 IGRTGRAGKTGMSVTFVTPNEIGYMRTIEALTKKKMSPLRPPTDAQAFAGQMKQAVEKVD 386
Query: 198 GVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 229
+ + + A++L+E + LAAAL +
Sbjct: 387 NLLKGDLSKYDDAAEKLLENYSAEDLAAALLK 418
>gi|134299771|ref|YP_001113267.1| DEAD/DEAH box helicase [Desulfotomaculum reducens MI-1]
gi|134052471|gb|ABO50442.1| ATP-dependent RNA helicase DbpA [Desulfotomaculum reducens MI-1]
Length = 532
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 106/192 (55%), Gaps = 2/192 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TKR DE+ L + A+ ALHGD+SQ QR + FR + +LVATDVAARG
Sbjct: 250 ILFCRTKRGVDELVAGLQARGFAAAALHGDLSQQQRNTVMRQFRSSEVELLVATDVAARG 309
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V +I+Y++P DPE +VHR GRTGRAG+ G AI + + + R +R +E
Sbjct: 310 LDIEGVSHVINYDIPQDPEFYVHRIGRTGRAGRSGVAITIISPREYRQLRQIENITKTHI 369
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALAAALAQLSG 232
+ P + DV+E E + L + E + ++ L++E +AAA +LS
Sbjct: 370 KRQKLPSIADVVERQKESIKERLIQIINEGKLGYYRSVVDALVDEYDPMDIAAAALKLSM 429
Query: 233 FSRPPSSRSLIN 244
P S +N
Sbjct: 430 DLEPNSEDVNLN 441
>gi|427383474|ref|ZP_18880194.1| hypothetical protein HMPREF9447_01227 [Bacteroides oleiciplenus YIT
12058]
gi|425728658|gb|EKU91513.1| hypothetical protein HMPREF9447_01227 [Bacteroides oleiciplenus YIT
12058]
Length = 484
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 97/138 (70%), Gaps = 2/138 (1%)
Query: 37 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNG 95
K+ +L+ L+ A G + +VF++TK AD ++ L+ IA E++HGD SQ+ R+R L+
Sbjct: 234 KKELLAQLLLGEA-GHQVLVFSRTKHGADNIARYLSRRGIACESIHGDKSQNARQRALSN 292
Query: 96 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 155
F++G+ V++ATD+AARG+DI +DL+++++LP+ PET+VHR GRTGRAG EG AI +
Sbjct: 293 FKEGRSNVIIATDIAARGIDIKGLDLVLNFDLPDVPETYVHRIGRTGRAGCEGRAIAFCS 352
Query: 156 SSQRRTVRSLERDVGCKF 173
S + +R +E+ G K
Sbjct: 353 SEEAPMLREIEKLTGIKL 370
>gi|365540016|ref|ZP_09365191.1| ATP-dependent RNA helicase [Vibrio ordalii ATCC 33509]
Length = 674
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 114/187 (60%), Gaps = 4/187 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T++D + ++ L S + ALHGDI Q RERT++ +QG +LVATDV AR
Sbjct: 248 SIVFVRTRQDTERLADWLLSRGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++ER +
Sbjct: 308 GLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSQ 367
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHPES-VEFFTPTAQRLIEEKGTDA--LAAALAQ 229
E + P+ + V E+ ++ A L + ++ F ++L + DA LAA L +
Sbjct: 368 MEEIQLPMRDKVAEARLIKLGAELEADKGHTALDKFVELIEKLQQSLEIDATTLAAILLK 427
Query: 230 LSGFSRP 236
+RP
Sbjct: 428 RQQGNRP 434
>gi|153840451|ref|ZP_01993118.1| cold-shock deAd box protein a, partial [Vibrio parahaemolyticus
AQ3810]
gi|149745886|gb|EDM57016.1| cold-shock deAd box protein a [Vibrio parahaemolyticus AQ3810]
Length = 473
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 112/187 (59%), Gaps = 4/187 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +LVATDV AR
Sbjct: 78 SIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 137
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++ER
Sbjct: 138 GLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSS 197
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTD--ALAAALAQ 229
E + P+ + V E+ ++ A L ++++ F ++L D LAA L +
Sbjct: 198 MEEIQLPLRDQVAEARLNKLAAELEAEKEHKALDKFAELVEKLQTSLEIDPAMLAAMLLK 257
Query: 230 LSGFSRP 236
RP
Sbjct: 258 RQQGKRP 264
>gi|425471042|ref|ZP_18849902.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9701]
gi|389883157|emb|CCI36432.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9701]
Length = 479
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 118/210 (56%), Gaps = 10/210 (4%)
Query: 26 KLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDI 84
K+Y I T K +L L+ + I+F +TK+ A E++ L + HG++
Sbjct: 219 KIYLIPRGWT-KLKVLQPLLEIEPLES-AIIFVRTKQTAAELTSKLQEAGQTVDEYHGNL 276
Query: 85 SQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 144
SQ QRER + FR+GK ++VATD+AARGLD+ N+ +I+Y+LP++ ET++HR GRTGRA
Sbjct: 277 SQVQRERLVQRFREGKIKLVVATDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRA 336
Query: 145 GKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVH 200
GK GTAI + RR +R +E+ + + E P +V L Q+ L+G
Sbjct: 337 GKTGTAISLVEPIDRRLLRQIEQRLRQRLESSPIPSRAEVEAKRLAKLQNQLKEALSG-- 394
Query: 201 PESVEFFTPTAQRLIEEKGTDALAAALAQL 230
E + F P + L EE A+AAA Q+
Sbjct: 395 -ERMASFLPLVRDLSEEYDPQAIAAAALQM 423
>gi|326795184|ref|YP_004313004.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
gi|326545948|gb|ADZ91168.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
MMB-1]
Length = 619
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 111/189 (58%), Gaps = 10/189 (5%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK E++ LT+ A EAL+GDISQ+ RERT++ ++G+ +LVATDV ARG
Sbjct: 251 IIFVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVDRIKKGQIDILVATDVVARG 310
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ V +++Y++P D E++VHR GRTGRAG+ GTAIL +RR ++ +ER
Sbjct: 311 LDVDRVSHVVNYDIPYDTESYVHRIGRTGRAGRSGTAILFVGHRERRMLQQIERATRQAI 370
Query: 174 EFVSPPVVEDVLESSA----EQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA--LAAAL 227
E + P D+ E +++ T++ E ++FF A +E D L AAL
Sbjct: 371 ERMQLPTASDINEQRVARFKQRITDTIDN---EDLDFFIELAASYQKENDVDPVKLGAAL 427
Query: 228 AQLSGFSRP 236
A ++ P
Sbjct: 428 AHMAQGKTP 436
>gi|323143379|ref|ZP_08078066.1| cold-shock DEAD-box protein A [Succinatimonas hippei YIT 12066]
gi|322416845|gb|EFY07492.1| cold-shock DEAD-box protein A [Succinatimonas hippei YIT 12066]
Length = 683
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 95/150 (63%), Gaps = 5/150 (3%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+VF +TK DA++V+ L + +A ALHGDI Q QRE+ + + G +++ATDVAAR
Sbjct: 295 VLVFVRTKTDAEDVANKLMARGMACAALHGDIPQRQREKIIERLKNGSLDIIIATDVAAR 354
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+ + + +Y++P D E++VHR GRTGRAG++G AIL + +RR +R +ER +
Sbjct: 355 GLDVDRITHVFNYDIPYDAESYVHRIGRTGRAGRQGEAILFVSPRERRALRQIERVTRQR 414
Query: 173 FEFVSPPVVEDV----LESSAEQVVATLNG 198
E + P V DV LE+ Q++ T+
Sbjct: 415 IEPMRMPTVADVNKRRLENFRNQILETIEA 444
>gi|390438620|ref|ZP_10227070.1| putative RNA helicase [Microcystis sp. T1-4]
gi|389837951|emb|CCI31194.1| putative RNA helicase [Microcystis sp. T1-4]
Length = 479
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 118/210 (56%), Gaps = 10/210 (4%)
Query: 26 KLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDI 84
K+Y I T K +L L+ + I+F +TK+ A E++ L + HG++
Sbjct: 219 KIYLIPRGWT-KLKVLQPLLEIEPLES-AIIFVRTKQTAAELTSKLQEAGQTVDEYHGNL 276
Query: 85 SQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 144
SQ QRER + FR+GK ++VATD+AARGLD+ N+ +I+Y+LP++ ET++HR GRTGRA
Sbjct: 277 SQVQRERLVQRFREGKIKLVVATDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRA 336
Query: 145 GKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVH 200
GK GTAI + RR +R +E+ + + E P +V L Q+ L+G
Sbjct: 337 GKTGTAISLVEPIDRRLLRQIEQRLRQRLESSPIPSRTEVEAKRLAKLQNQLKEALSG-- 394
Query: 201 PESVEFFTPTAQRLIEEKGTDALAAALAQL 230
E + F P + L EE A+AAA Q+
Sbjct: 395 -ERMASFLPLVRDLSEEYDPQAIAAAALQM 423
>gi|335998488|ref|ZP_08564399.1| ATP-dependent RNA helicase [Lactobacillus ruminis SPM0211]
gi|335348343|gb|EGM49849.1| ATP-dependent RNA helicase [Lactobacillus ruminis SPM0211]
Length = 506
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 5/224 (2%)
Query: 8 FSHSTQVGN--QDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDAD 65
F H QV N E + + Y + K I++ ++ V A TIVF +TKR D
Sbjct: 204 FMHEPQVVNIKAKELTTDLVDQYFVKAREYEKFDIMTRILDVQAPE-LTIVFGRTKRRVD 262
Query: 66 EVSLALTSIIASEA-LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 124
E+S L + + A +HGD++Q +R L F++G+ +LVATDVAARGLDI V + +
Sbjct: 263 ELSKGLEARGYNAAGIHGDLTQQRRMNILKKFKEGRLDILVATDVAARGLDISGVTHVYN 322
Query: 125 YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 184
Y++P DPE++VHR GRTGRAG G ++ T ++ +R +ER + E + PP ++
Sbjct: 323 YDIPQDPESYVHRIGRTGRAGHHGISVTFVTPNEMEYLRVIERLTKKRMEPLRPPTEKEA 382
Query: 185 LESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAAL 227
+ + V E + A L+E+ L AAL
Sbjct: 383 FIGQISSALGDIKDLVEKTETEKYEKQANELLEQYDAVELVAAL 426
>gi|291544767|emb|CBL17876.1| Superfamily II DNA and RNA helicases [Ruminococcus champanellensis
18P13]
Length = 555
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 145/298 (48%), Gaps = 41/298 (13%)
Query: 33 TATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRER 91
TA ++T L+ + + +VF TKR DE++ AL I + LHGD+ Q QR +
Sbjct: 205 TAMGRKTDALRLLLLAYEPKSAMVFCNTKRTVDELTEALCDKGIQAAGLHGDMKQMQRTQ 264
Query: 92 TLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAI 151
+N F+ G+ VLVATDVAARG+D+ +DL+ +Y+LP D E ++HR GRTGRAGK GTA+
Sbjct: 265 VMNAFKSGRIGVLVATDVAARGIDVNGIDLVFNYDLPQDNEYYIHRIGRTGRAGKSGTAL 324
Query: 152 LMFTSSQRRTVRSLERDVG--CKFEFVSP--PVVEDVLESSAEQV---VATLNGVHPES- 203
+ S RR V +L RD+ K E + P D+ +Q+ VA P S
Sbjct: 325 TLV--SGRRQVFAL-RDIAKYTKAEIIQKALPTRADLAAKKTQQLHDAVAQACAEQPSSR 381
Query: 204 ---------VEFFTP--TAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT- 251
E +T AQ L+EEK L+A+L + F P R + VT
Sbjct: 382 AEELLNRLTEEGYTAQQIAQVLLEEK----LSASLQSIPEFDAPQPIRREGKRGRSAVTT 437
Query: 252 ----LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPE 305
+ + R + F ++G L D + + GKI I Q ++PE
Sbjct: 438 AKVDINIGRQQRIAPNF-----ILGALVDATGLSGKDFGKIDIFD----QHTTVEVPE 486
>gi|441503307|ref|ZP_20985314.1| Cold-shock DEAD-box protein A [Photobacterium sp. AK15]
gi|441429523|gb|ELR66978.1| Cold-shock DEAD-box protein A [Photobacterium sp. AK15]
Length = 625
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 112/187 (59%), Gaps = 4/187 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T++D + ++ L++ + ALHGDI Q RERT+ ++G +LVATDV AR
Sbjct: 248 SIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVEHIKRGVIDILVATDVVAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P + + +Y++P D E+++HR GRTGRAG+ G AIL+ ++Q R +R++ER +
Sbjct: 308 GLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRNGKAILLVRTNQIRMLRTIERVTKSR 367
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDA--LAAALAQ 229
E + P+ + V E+ ++ L E S+E F +L E DA LAA L +
Sbjct: 368 MEEIQLPLRDVVAEARLNRLGQELAAQKEEASLEAFVELVDKLQETIEVDATTLAAMLLK 427
Query: 230 LSGFSRP 236
+RP
Sbjct: 428 RQQGNRP 434
>gi|349699158|ref|ZP_08900787.1| RNA helicase [Gluconacetobacter europaeus LMG 18494]
Length = 445
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 96/143 (67%), Gaps = 2/143 (1%)
Query: 36 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLN 94
+KR L L+ K + +VFT K +A++V+ L+ I +EA+HG+ SQ RER ++
Sbjct: 231 NKREALKLLVD-SPKVERAVVFTLMKHEANKVAAFLSEHGITAEAIHGNKSQGARERAMS 289
Query: 95 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMF 154
GFR G VLVATD+AARG+D+ +V + +Y+LPN PE++VHR GRT RAG+EG A+ +
Sbjct: 290 GFRSGNVKVLVATDIAARGIDVDDVTHVFNYDLPNVPESYVHRIGRTARAGREGWAVSLC 349
Query: 155 TSSQRRTVRSLERDVGCKFEFVS 177
+ QR +R +E+++G K VS
Sbjct: 350 DAEQRAWLRDIEKNIGKKIPVVS 372
>gi|330998021|ref|ZP_08321852.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
gi|329569322|gb|EGG51102.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
Length = 664
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 117/206 (56%), Gaps = 5/206 (2%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+++E AE + A K L ++ Y K I+F +T+ + EV+ L
Sbjct: 207 VGSRNEG-AETVNHVYYMVHAKDKYLALKRIVDYYPKI-YAIIFCRTRLETQEVADKLIQ 264
Query: 74 I-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+++LHGD+SQ QR+ T+ FRQ + LVATDVAARGLD+ ++ +I+Y +P+D E
Sbjct: 265 DGYNADSLHGDLSQQQRDLTMQKFRQHRVQFLVATDVAARGLDVEDLTHVINYGMPDDIE 324
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+ HRSGRTGRAGK+GT+I + + +R +R +E+ +G +F P +++ +V
Sbjct: 325 NYTHRSGRTGRAGKKGTSICIVHTRERSKIREIEKVIGKEFVKGEMPSGKEICAKQLYKV 384
Query: 193 VATLNGVH--PESVEFFTPTAQRLIE 216
+ + V E +E F P R +E
Sbjct: 385 IDDIERVEVDEEEIEQFLPEVYRKLE 410
>gi|152979711|ref|YP_001345340.1| DEAD/DEAH box helicase [Actinobacillus succinogenes 130Z]
gi|150841434|gb|ABR75405.1| DEAD/DEAH box helicase domain protein [Actinobacillus succinogenes
130Z]
Length = 615
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 111/384 (28%), Positives = 181/384 (47%), Gaps = 43/384 (11%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+FT+TK +V+ L + AL+GD++Q RE+TL+ R G +LVATDVAARG
Sbjct: 249 IIFTRTKTGTLDVTELLDKHGFRAAALNGDMTQQAREQTLDRLRNGSLDILVATDVAARG 308
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + L+++Y++P D E++VHR GRTGRAG+ G+AIL +RR + ++ER +
Sbjct: 309 LDVERISLVVNYDIPLDAESYVHRIGRTGRAGRSGSAILFVEPRERRLLGNIERLMKKPI 368
Query: 174 EFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLI--EEKGTDALAAALAQL 230
E V P E + + VA + + +E + + L ++ D AA L L
Sbjct: 369 EEVELPNHERLQACRRAKFVAKITKQLEHHDLEKYRSLLEDLFTADQDQEDIAAAMLMLL 428
Query: 231 SGFSR---PP----------------SSRSLINHEQGW---VTLQLTRDSAFSRGFMSAR 268
G + PP S RS + +G+ ++ L R + R
Sbjct: 429 QGKQKLILPPDAPMPKRNERRERANRSQRS--DERRGYGVPKSMDLYRIEIGRSDGVEVR 486
Query: 269 SVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKL 328
++G +++ + IG I + D + +LP+ + K+LL + ++K ++
Sbjct: 487 HIVGAIANEGDINSRNIGHIKLFDD----YSTIELPQGMPKQLL-RHFEKTRVLNKQMQM 541
Query: 329 PALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDD 388
++ + S + RF RD G R R R RG + RGF+ R +G
Sbjct: 542 SFVR-EVQSGERAERFEHRD------GKR--RANERFHERGEHRFNDRGFKGDRKFGGKF 592
Query: 389 EDGFSSSRGGRSFRSGNNRGSRFS 412
+ F G + FR +GSR S
Sbjct: 593 DRTFKDV-GRKEFREKGFKGSRHS 615
>gi|307564611|ref|ZP_07627147.1| putative ATP-dependent RNA helicase DeaD [Prevotella amnii CRIS
21A-A]
gi|307346681|gb|EFN91982.1| putative ATP-dependent RNA helicase DeaD [Prevotella amnii CRIS
21A-A]
Length = 613
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 113/193 (58%), Gaps = 6/193 (3%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+++E AE + A K L L+ Y K IVF +TK + EV+ L
Sbjct: 207 VGSRNEG-AESVNHIYYMVNAKDKYLALKRLVDFYPKI-YAIVFCRTKLETQEVADKLIK 264
Query: 74 I-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+EALHGD+SQ QR+ T+ FR +LVATDVAARGLD+ + +I+Y LP+D E
Sbjct: 265 DGYNAEALHGDLSQQQRDLTMQKFRSHLTQILVATDVAARGLDVTELTHVINYGLPDDIE 324
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
+ HRSGRTGRAGK+GT+I + ++ VR++ER +G +F + P E++ + +Q+
Sbjct: 325 NYTHRSGRTGRAGKKGTSIAIIHCREKYKVRNIERVIGKEFVDGTLPSAEEICK---KQL 381
Query: 193 VATLNGVHPESVE 205
T++ + V+
Sbjct: 382 FKTMSDILKTDVD 394
>gi|58039465|ref|YP_191429.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
gi|58001879|gb|AAW60773.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
Length = 432
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/120 (51%), Positives = 87/120 (72%), Gaps = 1/120 (0%)
Query: 52 GKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 110
G+ +VFT K A++V LT S I +EALHG+ SQ QRER LN FR+G VLVATD+A
Sbjct: 251 GQAVVFTLQKNIANDVCTFLTESGITAEALHGNRSQGQRERALNAFREGDVQVLVATDIA 310
Query: 111 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 170
ARG+D+ V +I+++LP+ PE++VHR GRTGRAG+ G AI + + QR + ++ER++G
Sbjct: 311 ARGIDVDTVTHVINHDLPSLPESYVHRIGRTGRAGRSGFAITLCDAEQRAWLHAVEREIG 370
>gi|340777297|ref|ZP_08697240.1| DNA/RNA helicase [Acetobacter aceti NBRC 14818]
Length = 579
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 110/192 (57%), Gaps = 4/192 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
++VF T+ ++ AL +S A+ G++ Q++R R + R G+ V VATDVAAR
Sbjct: 246 SMVFCHTREGVRQLHAALLQHGFSSVAISGELGQNERSRAIESLRNGQARVCVATDVAAR 305
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+D+P++ L+IH LP P T +HRSGRTGRAG++G +L+ S++R L + G
Sbjct: 306 GIDVPSLGLVIHASLPGSPATLLHRSGRTGRAGRKGICVLVTIPSKKRQADRLLQAAGVD 365
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQL-- 230
+ + P ++ + E+ E+++ T + E+ E P +RLI E+ + LAAAL L
Sbjct: 366 VTWNTAPTLDQIREADTERLI-TSEALTRETPENVKPLVERLIAERTPEQLAAALVFLWN 424
Query: 231 SGFSRPPSSRSL 242
G +P R +
Sbjct: 425 KGLPQPVKVRPI 436
>gi|425734748|ref|ZP_18853065.1| DEAD/DEAH box helicase [Brevibacterium casei S18]
gi|425480684|gb|EKU47848.1| DEAD/DEAH box helicase [Brevibacterium casei S18]
Length = 592
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 94/138 (68%), Gaps = 1/138 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK+ +E++ L + + A++GDI Q RERT+ R+GK +LVATDVAARG
Sbjct: 257 IMFVRTKQATEELAEKLRARGFKASAINGDIPQQARERTVEMLREGKIDILVATDVAARG 316
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + L+++Y++P+D E++VHR GRTGRAG+ G AIL T ++R + S+ER K
Sbjct: 317 LDVERISLVVNYDIPHDTESYVHRIGRTGRAGRSGEAILFITPREQRLLGSIERATKQKV 376
Query: 174 EFVSPPVVEDVLESSAEQ 191
E ++ P VE++ + E+
Sbjct: 377 EPLTLPSVEELTNTRVEK 394
>gi|387907207|ref|YP_006337543.1| ATP-dependent RNA helicase [Blattabacterium sp. (Blaberus
giganteus)]
gi|387582100|gb|AFJ90878.1| ATP-dependent RNA helicase [Blattabacterium sp. (Blaberus
giganteus)]
Length = 547
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 86/133 (64%), Gaps = 1/133 (0%)
Query: 55 IVFTQTKRDADEVS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F TK++ E++ + ++ALHGD+SQ QRE +N FR +LVATDVAARG
Sbjct: 248 IIFCSTKKETKEIAEFLIKDSYNADALHGDLSQTQRESVMNKFRNRNLQLLVATDVAARG 307
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ N+ +I+Y +PN+ ET+VHRSGRTGRAG G ++ + + + R +R E+ G F
Sbjct: 308 LDVNNITHVINYSIPNESETYVHRSGRTGRAGNIGISVCIIQTKEIRNLREFEKRTGKNF 367
Query: 174 EFVSPPVVEDVLE 186
+ + P E++ E
Sbjct: 368 DRIMLPTGEEICE 380
>gi|255654809|ref|ZP_05400218.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-23m63]
gi|296449553|ref|ZP_06891330.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
gi|296878124|ref|ZP_06902139.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
gi|296261617|gb|EFH08435.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
gi|296430877|gb|EFH16709.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
Length = 537
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 118/214 (55%), Gaps = 13/214 (6%)
Query: 26 KLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDI 84
K Y I T +++K +L L+ VY ++VF TKR ADE+ L + ++ALHGD+
Sbjct: 219 KQYYIETRSSNKLEVLCRLVDVY-DPKLSVVFCNTKRKADELVGDLQARGYFADALHGDL 277
Query: 85 SQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 144
Q QR+ ++ FR G +LVATDVAARG+D+ +V+ + +Y+LP D E +VHR GRTGRA
Sbjct: 278 KQTQRDIVMDKFRNGTIDILVATDVAARGIDVDDVECVFNYDLPQDEEYYVHRIGRTGRA 337
Query: 145 GKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESV 204
G+EG + + R ++ +ER K + P + DV E+ V T +++
Sbjct: 338 GREGMSFTFVFGKEMRKMKDIERYTKSKLIKHNIPTITDV----EEKKVGTFFAQVKQTI 393
Query: 205 E--FFTPTAQRLI-----EEKGTDALAAALAQLS 231
E T Q L E+ +AAAL +LS
Sbjct: 394 EEGHLTKQLQWLENFCNDEDYAMVDIAAALVKLS 427
>gi|323491514|ref|ZP_08096694.1| ATP-dependent RNA helicase DeaD [Vibrio brasiliensis LMG 20546]
gi|323314239|gb|EGA67323.1| ATP-dependent RNA helicase DeaD [Vibrio brasiliensis LMG 20546]
Length = 643
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 111/187 (59%), Gaps = 4/187 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LVATDV AR
Sbjct: 248 SIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++ER
Sbjct: 308 GLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTIERVTKSS 367
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTDA--LAAALAQ 229
E + P + V E+ ++ A L +++E F +L E DA LAA L +
Sbjct: 368 MEEIQLPHRDKVAEARLAKLGAELETEKEHKALEKFAELVDKLQESLELDAATLAAILLK 427
Query: 230 LSGFSRP 236
RP
Sbjct: 428 RQQGKRP 434
>gi|164658197|ref|XP_001730224.1| hypothetical protein MGL_2606 [Malassezia globosa CBS 7966]
gi|159104119|gb|EDP43010.1| hypothetical protein MGL_2606 [Malassezia globosa CBS 7966]
Length = 653
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 109/184 (59%), Gaps = 6/184 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + I+ K+++L D++ G T++F +TKR AD
Sbjct: 400 VFLSVGRVGSTSENITQKIEY----VEDRDKQSMLLDVLAAMPTSGLTLIFVETKRMADM 455
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S + S IA+ ++HGD +Q +RE L+ FR G+ +LVAT VAARGLDIPNV +++Y
Sbjct: 456 LSDFLIYSNIAATSIHGDRTQREREYALDLFRSGRTPILVATAVAARGLDIPNVTHVVNY 515
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 185
+LP+D + +VHR GRTGRAG G A F + R VR L + + + V P +E+V
Sbjct: 516 DLPSDIDDYVHRIGRTGRAGNIGHATAFFNRNNRNIVRDLVKLLQEANQEV-PSWLENVA 574
Query: 186 ESSA 189
SA
Sbjct: 575 SESA 578
>gi|114775697|ref|ZP_01451265.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
PV-1]
gi|114553808|gb|EAU56189.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
PV-1]
Length = 628
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 113/189 (59%), Gaps = 10/189 (5%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK DEV+ L + A+ AL+GD+ Q QRE+ +N + GK ++VATDVAARG
Sbjct: 248 IIFVRTKTATDEVAERLEARGYAASALNGDVKQSQREQIVNRLKSGKIDIVVATDVAARG 307
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + +I+Y++P+D E++VHR GRTGRAG++G AIL ++R + S+E+ +
Sbjct: 308 LDVERISHVINYDIPHDTESYVHRIGRTGRAGRKGDAILFVAPREKRMLYSIEKATNQRV 367
Query: 174 EFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA--LAAAL 227
E + P ED+ + +++ TL + +E F ++ +E A +AAAL
Sbjct: 368 EQLEMPTTEDINNLRIADFKQRISDTLAA---DGLELFAGIVEQYEQEHNVPAQEIAAAL 424
Query: 228 AQLSGFSRP 236
A L+ +P
Sbjct: 425 AFLAQGDKP 433
>gi|424780375|ref|ZP_18207249.1| Cold-shock DEAD-box protein A [Catellicoccus marimammalium
M35/04/3]
gi|422843078|gb|EKU27524.1| Cold-shock DEAD-box protein A [Catellicoccus marimammalium
M35/04/3]
Length = 494
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 123/217 (56%), Gaps = 9/217 (4%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 77
E A I Y + K IL+ L+ V+ +I+F +TKR DE+S AL S +
Sbjct: 208 EMTASLIDQYFMRVKEFEKFDILTRLLDVHT-PELSIIFGRTKRRVDELSRALESRGYKA 266
Query: 78 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
E +HGD+SQ +R L F++G+ +LVATDVAARGLDI V + ++++P DPE++VHR
Sbjct: 267 EGIHGDLSQQKRMDVLKAFKKGELDILVATDVAARGLDISGVTHVYNFDIPQDPESYVHR 326
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVV 193
GRTGRAGK+G ++ T ++ ++++E+ + + PP ++ ++S+ E++
Sbjct: 327 IGRTGRAGKDGMSVTFVTPNEMSYLQTIEKLTKKRMTPLKPPTKKEAFAGQMQSAMEEIA 386
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQL 230
L ++ + A +L+E+ L A L ++
Sbjct: 387 QKLENT---DLDRYVKQADQLLEQYSAIDLTALLLKV 420
>gi|260774297|ref|ZP_05883212.1| cold-shock DEAD-box protein A [Vibrio metschnikovii CIP 69.14]
gi|260611258|gb|EEX36462.1| cold-shock DEAD-box protein A [Vibrio metschnikovii CIP 69.14]
Length = 633
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 110/187 (58%), Gaps = 4/187 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LVATDV AR
Sbjct: 248 SIVFVRTRQDTERLADWLIARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P ++ + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++ER
Sbjct: 308 GLDVPRINHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRTS 367
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDA--LAAALAQ 229
E + P + V ES Q+ L ++E F ++L DA LAA L +
Sbjct: 368 MEEIQLPHRDKVAESRLTQLGLELEADKDHAALEKFAELVEKLQASLEVDATTLAAILLK 427
Query: 230 LSGFSRP 236
RP
Sbjct: 428 RQQGKRP 434
>gi|410938346|ref|ZP_11370199.1| DEAD/DEAH box helicase [Leptospira noguchii str. 2006001870]
gi|410786575|gb|EKR75513.1| DEAD/DEAH box helicase [Leptospira noguchii str. 2006001870]
Length = 513
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 85/134 (63%), Gaps = 1/134 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VF TK D V L S +EALHGD++Q QR++ +NGFR+G +LVATDVA RG
Sbjct: 247 LVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMNGFRKGSIEILVATDVAGRG 306
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ NV+ + +Y+LP D E +VHR GRTGRAGK+G A Q ++ +ER G K
Sbjct: 307 IDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKKIERINGIKI 366
Query: 174 EFVSPPVVEDVLES 187
E P ++D+ E+
Sbjct: 367 EAGKIPTLDDLEET 380
>gi|363756356|ref|XP_003648394.1| hypothetical protein Ecym_8298 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891594|gb|AET41577.1| Hypothetical protein Ecym_8298 [Eremothecium cymbalariae
DBVPG#7215]
Length = 638
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 105/190 (55%), Gaps = 18/190 (9%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEAL 80
+E I + KR++L DL+ + GG T+VF +TKR AD ++ + +++ A+
Sbjct: 384 SENITQKVLYVEDLDKRSVLLDLLAA-SDGGLTLVFVETKRMADALTDFLIMQNLSATAI 442
Query: 81 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 140
HGD SQ +RER L FR + +LVAT VAARGLDIPNV +I+Y+LP+D + +VHR GR
Sbjct: 443 HGDRSQAERERALQFFRTARANILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGR 502
Query: 141 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 200
TGRAG G A F + V+ L D+L+ + ++V + L V
Sbjct: 503 TGRAGNTGLATAFFNRGNKNVVKEL----------------IDILQEANQEVPSFLTQVA 546
Query: 201 PESVEFFTPT 210
ES PT
Sbjct: 547 RESSYGKAPT 556
>gi|282852614|ref|ZP_06261956.1| ATP-dependent RNA helicase DeaD family protein [Lactobacillus
gasseri 224-1]
gi|282556356|gb|EFB61976.1| ATP-dependent RNA helicase DeaD family protein [Lactobacillus
gasseri 224-1]
Length = 452
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 120/218 (55%), Gaps = 9/218 (4%)
Query: 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASE 78
E A I Y + K IL LI V ++F +TKR DE++ L + +
Sbjct: 175 ELTANLIDQYFVRAKENEKFDILCRLIDV-QNPDLAVIFGRTKRRVDELTRGLQARGYNA 233
Query: 79 A-LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 137
A +HGD+SQ +R L FR+GK +LVATDVAARGLDI V + +Y++P DP+++VHR
Sbjct: 234 AGIHGDLSQAKRMSVLKRFRKGKLDILVATDVAARGLDISGVSHVYNYDIPQDPDSYVHR 293
Query: 138 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVV 193
GRTGRAG+ G ++ T ++ +R++E+ K + PP E+ L ++ ++V
Sbjct: 294 IGRTGRAGQNGMSVTFVTPNEIGYMRTIEQLTHKKMMLLKPPTDEEAFKGQLSAANKKVT 353
Query: 194 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 231
L+G + ++ T +Q L + D +AA L LS
Sbjct: 354 ELLDG---DLSKYTTEASQLLDDYSAVDLVAALLKNLS 388
>gi|149186749|ref|ZP_01865060.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
gi|148829657|gb|EDL48097.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
Length = 455
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 103/180 (57%), Gaps = 10/180 (5%)
Query: 22 AEGIKLYAISTTATSKRTILSDLIT----VYAKGGKTIVFTQTKRDADEVSLAL-TSIIA 76
AE I Y K+T+L +++ V K + ++F +TK D + L S I
Sbjct: 217 AERIDQYLFMVQQDEKQTLLEMILSERHQVPGKFERVLIFARTKHGCDRIVKKLGQSGIP 276
Query: 77 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 136
+ A+HG+ SQ QRER L+ F++ K +LVATDVAARG+DIP V +++YELPN PE +VH
Sbjct: 277 ANAIHGNKSQPQRERALDEFKRAKTPILVATDVAARGIDIPGVSHVLNYELPNVPEQYVH 336
Query: 137 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP-----VVEDVLESSAEQ 191
R GRT RAG++G AI +R ++ + + +FE + P VVE V + EQ
Sbjct: 337 RIGRTARAGRDGVAIAFCAEDERDYLKDIRKKTDAEFERLPLPDNFRAVVEGVGPTKREQ 396
>gi|134300131|ref|YP_001113627.1| DEAD/DEAH box helicase [Desulfotomaculum reducens MI-1]
gi|134052831|gb|ABO50802.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum reducens
MI-1]
Length = 482
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 106/180 (58%), Gaps = 3/180 (1%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
IVF +TKR DE+ AL+ ++E +HGD++Q +RE L F++G VLVATDVAARG
Sbjct: 244 IVFGRTKRRVDELYEALSKRGYSAEGIHGDLTQSKRESVLRQFKEGIIEVLVATDVAARG 303
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LDI V + ++++P DPE++VHR GRTGRAGK+G AI T + +R +ER K
Sbjct: 304 LDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGEAITFVTPREMNHLRLIERITKHKI 363
Query: 174 EFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQ-RLIEEKGTDALAAALAQLS 231
P +++V+E V L V E E + A+ LIE+ +AAAL ++
Sbjct: 364 SRRPIPTIKEVIEGQQRLAVEKLLKVVEEGGFEHYRRLAEDLLIEQDAATLVAAALRMIT 423
>gi|163751207|ref|ZP_02158436.1| ATP-dependent RNA helicase DeaD [Shewanella benthica KT99]
gi|161329036|gb|EDQ00109.1| ATP-dependent RNA helicase DeaD [Shewanella benthica KT99]
Length = 611
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 10/189 (5%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +T+ E++ L + AS LHGD++Q RER + ++G +L+ATDVAARG
Sbjct: 249 IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGSLDILIATDVAARG 308
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + +I+Y++P D E ++HR GRTGRAG+ G AIL T + R +R++ER +
Sbjct: 309 LDVERIRHVINYDIPYDTEAYIHRIGRTGRAGRTGMAILFVTHREMRMLRTIERATKSRI 368
Query: 174 EFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIE--EKGTDALAAAL 227
+ P E V E EQV +N +S++F +L + E TD LAAAL
Sbjct: 369 SPMDVPSPESVTERRLSRLGEQVAEIINK---DSLDFMKGAVAQLCQQLEVDTDVLAAAL 425
Query: 228 AQLSGFSRP 236
Q RP
Sbjct: 426 LQQVQKDRP 434
>gi|126698341|ref|YP_001087238.1| ATP-dependent RNA helicase [Clostridium difficile 630]
gi|254974380|ref|ZP_05270852.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-66c26]
gi|255091773|ref|ZP_05321251.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP
107932]
gi|255099876|ref|ZP_05328853.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-63q42]
gi|255305765|ref|ZP_05349937.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC
43255]
gi|255313504|ref|ZP_05355087.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-76w55]
gi|255516192|ref|ZP_05383868.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-97b34]
gi|255649288|ref|ZP_05396190.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-37x79]
gi|260682458|ref|YP_003213743.1| ATP-dependent RNA helicase [Clostridium difficile CD196]
gi|260686057|ref|YP_003217190.1| ATP-dependent RNA helicase [Clostridium difficile R20291]
gi|306519386|ref|ZP_07405733.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-32g58]
gi|384360039|ref|YP_006197891.1| putative ATP-dependent RNA helicase [Clostridium difficile BI1]
gi|423082109|ref|ZP_17070704.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 002-P50-2011]
gi|423085713|ref|ZP_17074155.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 050-P50-2011]
gi|423090412|ref|ZP_17078711.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 70-100-2010]
gi|115249778|emb|CAJ67595.1| putative ATP-dependent RNA helicase [Clostridium difficile 630]
gi|260208621|emb|CBA61352.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
gi|260212073|emb|CBE02663.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
gi|357549359|gb|EHJ31206.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 002-P50-2011]
gi|357549630|gb|EHJ31476.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 050-P50-2011]
gi|357556521|gb|EHJ38116.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 70-100-2010]
Length = 537
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 118/214 (55%), Gaps = 13/214 (6%)
Query: 26 KLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDI 84
K Y I T +++K +L L+ VY ++VF TKR ADE+ L + ++ALHGD+
Sbjct: 219 KQYYIETRSSNKLEVLCRLVDVY-DPKLSVVFCNTKRKADELVGDLQARGYFADALHGDL 277
Query: 85 SQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 144
Q QR+ ++ FR G +LVATDVAARG+D+ +V+ + +Y+LP D E +VHR GRTGRA
Sbjct: 278 KQTQRDIVMDKFRNGTIDILVATDVAARGIDVDDVECVFNYDLPQDEEYYVHRIGRTGRA 337
Query: 145 GKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESV 204
G+EG + + R ++ +ER K + P + DV E+ V T +++
Sbjct: 338 GREGMSFTFVFGKEMRKMKDIERYTKSKLIKHNIPTITDV----EEKKVGTFFAQVKQTI 393
Query: 205 E--FFTPTAQRLI-----EEKGTDALAAALAQLS 231
E T Q L E+ +AAAL +LS
Sbjct: 394 EEGHLTKQLQWLEGFCNDEDYAMVDIAAALVKLS 427
>gi|417322261|ref|ZP_12108795.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus 10329]
gi|328470415|gb|EGF41326.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus 10329]
Length = 643
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 112/187 (59%), Gaps = 4/187 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +LVATDV AR
Sbjct: 248 SIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++ER
Sbjct: 308 GLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSS 367
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTD--ALAAALAQ 229
E + P+ + V E+ ++ A L ++++ F ++L D LAA L +
Sbjct: 368 MEEIQLPLRDQVAEARLNKLAAELEAEKEHKALDKFAELVEKLQTSLEIDPAMLAAMLLK 427
Query: 230 LSGFSRP 236
RP
Sbjct: 428 RQQGKRP 434
>gi|390452248|ref|ZP_10237797.1| ATP-dependent RNA helicase [Nitratireductor aquibiodomus RA22]
gi|389659980|gb|EIM71712.1| ATP-dependent RNA helicase [Nitratireductor aquibiodomus RA22]
Length = 601
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 107/184 (58%), Gaps = 2/184 (1%)
Query: 48 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 106
Y + +VF T+ + ++ + + AL G++SQ +R L R G+ V VA
Sbjct: 241 YHEARNALVFCNTRATVNHLTARFNNRGFSVVALSGELSQSERTHALQAMRDGRARVCVA 300
Query: 107 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 166
TDVAARG+D+PN++L++H +LP + ET +HRSGRTGRAG++G + L+ + RR L
Sbjct: 301 TDVAARGIDLPNLELVVHADLPTNAETLLHRSGRTGRAGRKGVSALIVAPNGRRRAERLL 360
Query: 167 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 226
RD + E+ SPP ++VL+ E+++A + P E + L+E+ G + +AAA
Sbjct: 361 RDAKVRLEWTSPPSADEVLQRDDERLMADPHLEDPIQ-ENEADFVKALLEKHGAEQIAAA 419
Query: 227 LAQL 230
+L
Sbjct: 420 FVRL 423
>gi|374261655|ref|ZP_09620233.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
gi|363537749|gb|EHL31165.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
Length = 584
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 106/181 (58%), Gaps = 4/181 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
IVF +TK +EV+ L + + A+HGDI+Q RER + FRQG +LVATDVAAR
Sbjct: 248 VIVFVRTKSSTEEVAELLQQQGLRAMAIHGDITQALRERIIAQFRQGAIDILVATDVAAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+ V +I+Y+LP+D ET+VHR GRTGRAG+ G AIL T + R + S+ER +
Sbjct: 308 GLDVERVTHVINYDLPHDNETYVHRIGRTGRAGRSGVAILFVTPKESRLISSVERHTRQR 367
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDA--LAAALAQ 229
V+ P + + ++ +A + + E++ + + I+E A +AA LA
Sbjct: 368 ITKVNVPNDHMIQVARQQRFMANITARLEHENIHSYRKIVEEYIKEHEVSAVDVAATLAL 427
Query: 230 L 230
L
Sbjct: 428 L 428
>gi|374704913|ref|ZP_09711783.1| DEAD-box ATP dependent DNA helicase [Pseudomonas sp. S9]
Length = 558
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 98/143 (68%), Gaps = 1/143 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I F +TK+ +++ AL + + AL+GDI+Q+QRER ++ + G+ ++VATDVAARG
Sbjct: 249 IAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAARG 308
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+P + + + ++P DPE++VHR GRTGRAG+EG A+L+ T +RR ++ +ER G K
Sbjct: 309 LDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQKV 368
Query: 174 EFVSPPVVEDVLESSAEQVVATL 196
V P + VL++ +++ ++L
Sbjct: 369 GEVKLPNAQQVLDARIKKLTSSL 391
>gi|424043805|ref|ZP_17781428.1| cold-shock DEAD box protein A [Vibrio cholerae HENC-03]
gi|408888334|gb|EKM26795.1| cold-shock DEAD box protein A [Vibrio cholerae HENC-03]
Length = 644
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 112/187 (59%), Gaps = 4/187 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +LVATDV AR
Sbjct: 248 SIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++ER
Sbjct: 308 GLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSS 367
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIE--EKGTDALAAALAQ 229
E + P+ + V E+ ++ A L +S++ F ++L E LAA L +
Sbjct: 368 MEEIQLPLRDQVAEARLSKLAAELEAEKEHKSLDKFAELVEKLQTSLEINPAMLAAMLLK 427
Query: 230 LSGFSRP 236
RP
Sbjct: 428 RQQGKRP 434
>gi|242808610|ref|XP_002485202.1| ATP dependent RNA helicase (Dbp1), putative [Talaromyces stipitatus
ATCC 10500]
gi|218715827|gb|EED15249.1| ATP dependent RNA helicase (Dbp1), putative [Talaromyces stipitatus
ATCC 10500]
Length = 680
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 93/160 (58%), Gaps = 5/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + I+ KR++L D++ + G T++F +TKR AD
Sbjct: 411 VFLSVGRVGSTSENITQRIEY----VEDHDKRSVLLDILHTHGTTGLTLIFVETKRMADS 466
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+ + + A+HGD +Q +RER L FR G+ +LVAT VAARGLDIPNV +++Y
Sbjct: 467 LCDFLINQNFPATAIHGDRTQRERERALEMFRNGRCPILVATAVAARGLDIPNVTHVVNY 526
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP D + +VHR GRTGRAG G A F R VR L
Sbjct: 527 DLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDL 566
>gi|444426564|ref|ZP_21221977.1| Cold-shock DEAD-box protein A [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444240216|gb|ELU51762.1| Cold-shock DEAD-box protein A [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 639
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 112/187 (59%), Gaps = 4/187 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +LVATDV AR
Sbjct: 248 SIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++ER
Sbjct: 308 GLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSS 367
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTD--ALAAALAQ 229
E + P+ + V E+ ++ A L ++++ F ++L D LAA L +
Sbjct: 368 MEEIQLPLRDQVAEARLNKLAAELEAEKEHKALDKFAELVEKLQTSLEIDPAMLAAMLLK 427
Query: 230 LSGFSRP 236
RP
Sbjct: 428 RQQGKRP 434
>gi|388598566|ref|ZP_10156962.1| ATP-dependent RNA helicase DeaD [Vibrio campbellii DS40M4]
Length = 641
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 112/187 (59%), Gaps = 4/187 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +LVATDV AR
Sbjct: 248 SIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++ER
Sbjct: 308 GLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSS 367
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTD--ALAAALAQ 229
E + P+ + V E+ ++ A L ++++ F ++L D LAA L +
Sbjct: 368 MEEIQLPLRDQVAEARLNKLAAELEAEKEHKALDKFAELVEKLQTSLEIDPAMLAAMLLK 427
Query: 230 LSGFSRP 236
RP
Sbjct: 428 RQQGKRP 434
>gi|357043414|ref|ZP_09105109.1| hypothetical protein HMPREF9138_01581 [Prevotella histicola F0411]
gi|355368588|gb|EHG16005.1| hypothetical protein HMPREF9138_01581 [Prevotella histicola F0411]
Length = 623
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 106/172 (61%), Gaps = 3/172 (1%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+++E AE + A K L L+ Y K IVF +TK + E++ L
Sbjct: 207 VGSRNEG-AESVNHIYYMVNARDKYLALKRLVDFYPKI-YAIVFCRTKVETQEIADKLIK 264
Query: 74 I-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+E+LHGD+SQ QR+ T+ FR +LVATDVAARGLD+ ++ +I+Y LP+D E
Sbjct: 265 DGYNAESLHGDLSQQQRDLTMQKFRSHLTQILVATDVAARGLDVNDLTHVINYGLPDDIE 324
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 184
+ HRSGRTGRAGK+GT+I + S ++ VR++ER++G +F + P E++
Sbjct: 325 NYTHRSGRTGRAGKKGTSISIIHSREKYKVRNIEREIGKEFVDGTLPSPEEI 376
>gi|407476475|ref|YP_006790352.1| ATP-dependent RNA helicase CshA [Exiguobacterium antarcticum B7]
gi|407060554|gb|AFS69744.1| ATP-dependent RNA helicase CshA [Exiguobacterium antarcticum B7]
Length = 539
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 113/188 (60%), Gaps = 4/188 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+I+F +TK+ DE++ L ++ LHGD++Q +R++ + F++G +LVATDVAAR
Sbjct: 243 SIIFGRTKKRVDEMTEGLVQRGYTADGLHGDLTQAKRDQVIRRFKKGTIDILVATDVAAR 302
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLDI V + ++++P DPE++VHR GRTGRAGK G+AI T + ++++ER K
Sbjct: 303 GLDITGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGSAITFVTPREFGQIKTIERVTNKK 362
Query: 173 FEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 231
P ++++LE + + L V ++ + +T AQ L+EE +A+ A L
Sbjct: 363 MSRRHAPTLDEILEGNLKLAAQELIKRVEAKNSQEYTTLAQELLEE--YEAVELISAALK 420
Query: 232 GFSRPPSS 239
G ++ P +
Sbjct: 421 GLTKEPDA 428
>gi|62390044|ref|YP_225446.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
13032]
gi|41325380|emb|CAF19860.1| Superfamily II DNA and RNA helicase [Corynebacterium glutamicum
ATCC 13032]
Length = 732
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 90/131 (68%), Gaps = 1/131 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 345 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 404
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + ++++++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER
Sbjct: 405 LDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERATNAPL 464
Query: 174 EFVSPPVVEDV 184
+ P V+ V
Sbjct: 465 HEMELPTVDQV 475
>gi|258648289|ref|ZP_05735758.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
tannerae ATCC 51259]
gi|260852209|gb|EEX72078.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
tannerae ATCC 51259]
Length = 607
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 119/426 (27%), Positives = 191/426 (44%), Gaps = 58/426 (13%)
Query: 14 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73
VG+++E AE + A K L ++ Y K I+F +T+ + EV+ AL
Sbjct: 207 VGSRNEG-AENVNHTYYLVQARDKYHALKRIVDYYPKI-YGIIFCRTRLETQEVADALIK 264
Query: 74 I-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 132
+EALHGD+SQ QR+ T+ FRQ +L+ATDVAARGLD+ ++ +I+Y +P+D E
Sbjct: 265 DGYNAEALHGDLSQAQRDLTMQKFRQHNTQLLIATDVAARGLDVDDLTHVINYGMPDDIE 324
Query: 133 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 192
++HRSGRTGR GK G +I + ++ +R++ER +G +FE P +++ V
Sbjct: 325 NYIHRSGRTGRIGKRGASIAIIHLREKGKIRNIERTIGKQFEVGVLPEPKEICTKQLYHV 384
Query: 193 VATLNGVHPESVEF--FTPTAQR---------LIEEKGTDAL---------AAALAQLSG 232
+ L V + + F P R LI +DA A + Q G
Sbjct: 385 MDHLEHVEVDETQIAPFLPEVFRKLDWLSKEDLIRRLVSDAFGRFLKYYANAPEIIQPGG 444
Query: 233 FSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMS--------ARSVMGFLSDVYPTAADE 284
P +R N + D ++R F++ AR ++ ++ Y +
Sbjct: 445 KGDTPEARRERNRSERRERGPHKADPGYARLFINLGKRDNFYAREIINLINR-YVKGKIQ 503
Query: 285 IGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRF 344
IG+I + + + F++PEE A +L K K+ P + D
Sbjct: 504 IGRIDLTNN----CSFFEVPEEDAPIVLKKM-----ARVKVGNRPVVVD----------- 543
Query: 345 SSRDRFSRGGGSRFSRGGARGGAR---GGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSF 401
+ DR + GG +RG R AR G +R+ R R S + S R F
Sbjct: 544 -AADRVNPEGGEEKARGRKRKPAREEYAGRRSERKAPRGERRKSSKPNENTQSD--WRQF 600
Query: 402 RSGNNR 407
+ +N+
Sbjct: 601 FNNDNK 606
>gi|424030057|ref|ZP_17769555.1| cold-shock DEAD box protein A [Vibrio cholerae HENC-01]
gi|408883063|gb|EKM21857.1| cold-shock DEAD box protein A [Vibrio cholerae HENC-01]
Length = 643
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 112/187 (59%), Gaps = 4/187 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +LVATDV AR
Sbjct: 248 SIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++ER
Sbjct: 308 GLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSS 367
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTD--ALAAALAQ 229
E + P+ + V E+ ++ A L ++++ F ++L D LAA L +
Sbjct: 368 MEEIQLPLRDQVAEARLNKLAAELEAEKEHKALDKFAELVEKLQTSLEIDPTMLAAMLLK 427
Query: 230 LSGFSRP 236
RP
Sbjct: 428 RQQGKRP 434
>gi|349685730|ref|ZP_08896872.1| RNA helicase [Gluconacetobacter oboediens 174Bp2]
Length = 446
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 95/143 (66%), Gaps = 2/143 (1%)
Query: 36 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLN 94
+KR L L+ K + +VFT K +A++V+ L I +EA+HG+ SQ RER ++
Sbjct: 231 NKREALK-LLVDSPKVERAVVFTLMKHEANKVAAFLNEHGITAEAIHGNKSQGARERAMS 289
Query: 95 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMF 154
GFR G VLVATD+AARG+D+ +V + +Y+LPN PE++VHR GRT RAG+EG A+ +
Sbjct: 290 GFRSGNVKVLVATDIAARGIDVDDVTHVFNYDLPNVPESYVHRIGRTARAGREGWAVSLC 349
Query: 155 TSSQRRTVRSLERDVGCKFEFVS 177
+ QR +R +E+++G K VS
Sbjct: 350 DAEQRAWLRDIEKNIGKKIPVVS 372
>gi|83945168|ref|ZP_00957517.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Oceanicaulis sp. HTCC2633]
gi|83851338|gb|EAP89194.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Oceanicaulis sp. HTCC2633]
Length = 466
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 100/164 (60%), Gaps = 4/164 (2%)
Query: 20 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASE 78
K E I T A++K L DL+ A G + I+FT+TK AD V+ L +
Sbjct: 232 KPVERIDQKVFYTEASAKPDALIDLMAPEA-GKRAIIFTRTKYGADRVAKRLVKYGHKAN 290
Query: 79 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS 138
A+HGD SQ+QR R L+ F+ G+ VLVATD+AARG+D+ VDL+++YELPN E +VHR
Sbjct: 291 AIHGDKSQNQRTRALDAFKSGEAPVLVATDIAARGIDVDGVDLVVNYELPNVAENYVHRI 350
Query: 139 GRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV--SPPV 180
GRT RAG G A+ + +R ++ +E+ +G + + +PP+
Sbjct: 351 GRTARAGASGRAVALCAPDERVMLKDIEKTMGVTIQGLNDAPPM 394
>gi|456888324|gb|EMF99307.1| DEAD/DEAH box helicase [Leptospira borgpetersenii str. 200701203]
Length = 527
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 84/134 (62%), Gaps = 1/134 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VF TK D V L S +EALHGD++Q QR++ +NGFR G +LVATDVA RG
Sbjct: 247 LVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMNGFRNGNIEILVATDVAGRG 306
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ NV+ + +Y+LP D E +VHR GRTGRAGK+G A Q ++ +ER G K
Sbjct: 307 IDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKKIERINGIKI 366
Query: 174 EFVSPPVVEDVLES 187
E P ++D+ E+
Sbjct: 367 EAGKIPTLDDLEET 380
>gi|19552380|ref|NP_600382.1| helicase [Corynebacterium glutamicum ATCC 13032]
gi|21323923|dbj|BAB98549.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum
ATCC 13032]
gi|385143290|emb|CCH24329.1| putative helicase [Corynebacterium glutamicum K051]
Length = 732
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 90/131 (68%), Gaps = 1/131 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 345 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 404
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + ++++++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER
Sbjct: 405 LDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERATNAPL 464
Query: 174 EFVSPPVVEDV 184
+ P V+ V
Sbjct: 465 HEMELPTVDQV 475
>gi|390951966|ref|YP_006415725.1| DNA/RNA helicase [Thiocystis violascens DSM 198]
gi|390428535|gb|AFL75600.1| DNA/RNA helicase, superfamily II [Thiocystis violascens DSM 198]
Length = 635
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 115/411 (27%), Positives = 191/411 (46%), Gaps = 58/411 (14%)
Query: 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 83
I + T K +L+ ++ + G ++F +TK E+S L + A+E L+GD
Sbjct: 222 IDQHHCVVTRFHKLDVLTRILELEPFDG-MLIFVRTKNATTELSDKLKAHGFAAEPLNGD 280
Query: 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 143
++Q RERT+ +QG+ +LVATDVAARGLD+ + +++Y++P DP +VHR GRTGR
Sbjct: 281 MNQEMRERTVERLKQGQLDILVATDVAARGLDVERISHVVNYDIPTDPSAYVHRIGRTGR 340
Query: 144 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 203
AG+ G AIL+ +R +R++ER + + PP + +S ++ + + E
Sbjct: 341 AGRAGRAILLVEPRERGLLRAIERTIRRDVPAMDPPSAAALSQSRIDRFITEVRTTMTEQ 400
Query: 204 -VEFFTPTAQRLIEEKGTDAL--AAALAQLSGFSRP---------PS------------- 238
++FF R+ +E+ + + AAALA L+ RP P+
Sbjct: 401 DLDFFYRLLARIGQEQEIEIMDIAAALAFLNQRERPLNVKEDLPRPAAPKREWSERPPRS 460
Query: 239 --------------SRSLINHEQGW---VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTA 281
SR H QG L R + + R ++G +++
Sbjct: 461 EGRDERRPRPERDDSRPRTEHAQGRREDADLVSYRIEVGHQHGATPREIVGAIANEGGIE 520
Query: 282 ADEIGKIHIIADDRVQGAVFDLPEEIAKELLN--KQIPPGNTISKITKL----PALQDDG 335
IG+I+I D ++ DLP+ + +E++N K++ +I+ PA G
Sbjct: 521 GRYIGRINIQDDH----SIVDLPKGMPREVVNHLKRVFVRGQALRISPADGTRPAEASHG 576
Query: 336 PS-SDNYGRF--SSRDRFSR-GGGSRFSRGGARGGARGGGSMDRRGFRSSR 382
+ S YG+ ++D+ R GG R G RG S D GFR+ R
Sbjct: 577 HAPSPKYGQTPGQAQDKTPRAAGGFRRQSGDGSAPRRGPPSKDSSGFRADR 627
>gi|262274077|ref|ZP_06051889.1| cold-shock DEAD-box protein A [Grimontia hollisae CIP 101886]
gi|262221887|gb|EEY73200.1| cold-shock DEAD-box protein A [Grimontia hollisae CIP 101886]
Length = 618
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 72/187 (38%), Positives = 114/187 (60%), Gaps = 4/187 (2%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+IVF +T++D + ++ L++ + ALHGDI Q RERT+ ++G +LVATDV AR
Sbjct: 248 SIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVEHIKRGVIDILVATDVVAR 307
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+P + + +Y++P D E+++HR GRTGRAG+ G AIL+ ++Q R +R++ER +
Sbjct: 308 GLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRAGKAILLVRTNQIRMLRTIERVTSTR 367
Query: 173 FEFVSPPVVEDVLESSAEQVVATLN-GVHPESVEFFTPTAQRLIEEKGTD--ALAAALAQ 229
E + P+ + V E+ ++ A L+ ES+E F ++L E+ D LAA L Q
Sbjct: 368 MEEIQLPLRDKVAEARLARLAADLHEQKESESLEAFVGLIEKLQEQIDVDTATLAAMLLQ 427
Query: 230 LSGFSRP 236
RP
Sbjct: 428 RQQGKRP 434
>gi|145295298|ref|YP_001138119.1| hypothetical protein cgR_1238 [Corynebacterium glutamicum R]
gi|417970048|ref|ZP_12610983.1| hypothetical protein CgS9114_03408 [Corynebacterium glutamicum
S9114]
gi|140845218|dbj|BAF54217.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344045730|gb|EGV41400.1| hypothetical protein CgS9114_03408 [Corynebacterium glutamicum
S9114]
Length = 729
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 90/131 (68%), Gaps = 1/131 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVATDVAARG
Sbjct: 345 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 404
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
LD+ + ++++++PND E++VHR GRTGRAG+ G AIL T +RR +RS+ER
Sbjct: 405 LDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERATNAPL 464
Query: 174 EFVSPPVVEDV 184
+ P V+ V
Sbjct: 465 HEMELPTVDQV 475
>gi|224538852|ref|ZP_03679391.1| hypothetical protein BACCELL_03748 [Bacteroides cellulosilyticus
DSM 14838]
gi|224519527|gb|EEF88632.1| hypothetical protein BACCELL_03748 [Bacteroides cellulosilyticus
DSM 14838]
Length = 478
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 96/139 (69%), Gaps = 2/139 (1%)
Query: 37 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNG 95
K+ +L+ L+ A G + +VF++TK AD ++ L+ I E++HGD SQ+ R+R L+
Sbjct: 235 KKELLAQLLLGEA-GHQVLVFSRTKHGADNIARYLSRRGITCESIHGDKSQNSRQRALSN 293
Query: 96 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 155
F++G+ V++ATD+AARG+DI +DL+++Y+LP+ PET+VHR GRTGRAG EG AI +
Sbjct: 294 FKEGRSNVIIATDIAARGIDIKGLDLVLNYDLPDVPETYVHRIGRTGRAGCEGRAIAFCS 353
Query: 156 SSQRRTVRSLERDVGCKFE 174
+ +R +E+ G K E
Sbjct: 354 GEEVPMLREIEKLTGIKLE 372
>gi|373110372|ref|ZP_09524641.1| hypothetical protein HMPREF9712_02234 [Myroides odoratimimus CCUG
10230]
gi|423130562|ref|ZP_17118237.1| hypothetical protein HMPREF9714_01637 [Myroides odoratimimus CCUG
12901]
gi|423134260|ref|ZP_17121907.1| hypothetical protein HMPREF9715_01682 [Myroides odoratimimus CIP
101113]
gi|423326978|ref|ZP_17304786.1| hypothetical protein HMPREF9711_00360 [Myroides odoratimimus CCUG
3837]
gi|371643014|gb|EHO08572.1| hypothetical protein HMPREF9712_02234 [Myroides odoratimimus CCUG
10230]
gi|371644421|gb|EHO09952.1| hypothetical protein HMPREF9714_01637 [Myroides odoratimimus CCUG
12901]
gi|371647017|gb|EHO12527.1| hypothetical protein HMPREF9715_01682 [Myroides odoratimimus CIP
101113]
gi|404607548|gb|EKB07050.1| hypothetical protein HMPREF9711_00360 [Myroides odoratimimus CCUG
3837]
Length = 627
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 115/388 (29%), Positives = 186/388 (47%), Gaps = 38/388 (9%)
Query: 54 TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
++VF +TKRD ++ L + ALHGD+SQ QR+ + FR + +LVATDVAAR
Sbjct: 245 SVVFCRTKRDTQSIAEKLIEDGYNAAALHGDLSQAQRDAVMKSFRGKQIQMLVATDVAAR 304
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
G+D+ ++ +++Y+LP++ ET+ HRSGRTGRAGK GT++++ T S+ R ++ +ER + K
Sbjct: 305 GIDVDDITHVVNYQLPDEIETYTHRSGRTGRAGKSGTSMVIVTKSELRKIQQIERIIKTK 364
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHPES-VEFFTPTAQRLIEEKGTDALAAALAQLS 231
FE P ++ E + + V + +E + P L+++ + + + +
Sbjct: 365 FEEKPVPSGIEICEIQLFHLANRIKEVEVNTEIEAYLPAITELLKDFDKEEIIKKVVSVE 424
Query: 232 GFSR-----PPSSRSLINHEQGWVTLQLTRDSAFSRGFMSA--------RSVMGFLSDVY 278
F+R +S SL + G + R F++ ++ FL D
Sbjct: 425 -FNRFLEYYQKASNSLSSVSAGRNNSKEVPTDGAVRFFVNLGAKDNLDWMTLKDFLRDTL 483
Query: 279 PTAADEIGKIHIIADDRVQGAVFDLPEEIAK---ELLNKQIPPGNTIS-KITKLPALQDD 334
D++ K+ D + + F+ E A+ E LN G ++ +I+ ++
Sbjct: 484 ELGRDDLFKV----DVKDGFSFFNTEAEHAEKVMETLNGLEYQGRRVNVEISNNDGGRNG 539
Query: 335 GPSSDN--YGRFSSRDRFS----RGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDD 388
G N G F +R S RGG R S + GG RGG +RR RSS +
Sbjct: 540 GRRDHNNRKGGFRGGERRSEGGFRGGERRSSNRSSEGGFRGG---ERRSDRSSSEGRGER 596
Query: 389 EDGFSSSRGGRSFRSGNNRGSRFSTSSD 416
SS R R N RGSR S+ D
Sbjct: 597 RSDRSSERAPR-----NERGSRRSSEGD 619
>gi|339444298|ref|YP_004710302.1| hypothetical protein EGYY_07040 [Eggerthella sp. YY7918]
gi|338904050|dbj|BAK43901.1| hypothetical protein EGYY_07040 [Eggerthella sp. YY7918]
Length = 510
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 100/157 (63%), Gaps = 4/157 (2%)
Query: 22 AEGIKLYAISTTATSKRTILSDLITVYAKGG-KTIVFTQTKRDADEVSLALT-SIIASEA 79
AE + Y + K +L ++ KG + IVF +TK +E + L S + E+
Sbjct: 215 AETVAQYVMPIANRKKPELLHAVLD--EKGAERVIVFARTKNRTEECADELRRSGYSVES 272
Query: 80 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 139
+H D SQ QR+R L+ FR+GK ++LVATDV ARG+D+P+V+ +I+++LP+ PE +VHR G
Sbjct: 273 IHSDKSQGQRKRALDNFRRGKTSILVATDVLARGIDVPDVNHVINFDLPDMPEDYVHRIG 332
Query: 140 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV 176
RTGRAG+EG AI TS RT++ +ER +G F+
Sbjct: 333 RTGRAGEEGFAISFVTSETHRTLKDIERLIGKDIPFM 369
>gi|116329398|ref|YP_799118.1| ATP-dependent RNA helicase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116330001|ref|YP_799719.1| ATP-dependent RNA helicase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|116122142|gb|ABJ80185.1| ATP-dependent RNA helicase (superfamily II) [Leptospira
borgpetersenii serovar Hardjo-bovis str. L550]
gi|116123690|gb|ABJ74961.1| ATP-dependent RNA helicase (superfamily II) [Leptospira
borgpetersenii serovar Hardjo-bovis str. JB197]
Length = 513
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 84/134 (62%), Gaps = 1/134 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VF TK D V L S +EALHGD++Q QR++ +NGFR G +LVATDVA RG
Sbjct: 247 LVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMNGFRNGNIEILVATDVAGRG 306
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ NV+ + +Y+LP D E +VHR GRTGRAGK+G A Q ++ +ER G K
Sbjct: 307 IDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKKIERINGIKI 366
Query: 174 EFVSPPVVEDVLES 187
E P ++D+ E+
Sbjct: 367 EAGKIPTLDDLEET 380
>gi|400600842|gb|EJP68510.1| putative ATP-dependent RNA helicase DED1 [Beauveria bassiana ARSEF
2860]
Length = 668
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 96/160 (60%), Gaps = 6/160 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + ++ KR++L D++ +A GG T++F +TKR AD
Sbjct: 406 VFLSVGRVGSTSENITQKVEY----VEDVDKRSVLLDILHSHA-GGLTLIFVETKRMADS 460
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
+S + + ++HGD +Q +RER L FR G+ ++VAT VAARGLDIPNV +I+Y
Sbjct: 461 LSEFLMNQSFPATSIHGDRTQRERERALEFFRNGRCPIMVATAVAARGLDIPNVTHVINY 520
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165
+LP D + +VHR GRTGRAG G A F R VR L
Sbjct: 521 DLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVREL 560
>gi|365875004|ref|ZP_09414534.1| dead/deah box helicase domain protein [Elizabethkingia anophelis
Ag1]
gi|442589352|ref|ZP_21008160.1| dead/deah box helicase domain protein [Elizabethkingia anophelis
R26]
gi|365757116|gb|EHM99025.1| dead/deah box helicase domain protein [Elizabethkingia anophelis
Ag1]
gi|442560962|gb|ELR78189.1| dead/deah box helicase domain protein [Elizabethkingia anophelis
R26]
Length = 560
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Query: 54 TIVFTQTKRDADEVS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112
+I+F +T+ + EV+ + + A++ALHGD+SQ QR+ + FR +LVATDVAAR
Sbjct: 245 SIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATDVAAR 304
Query: 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172
GLD+ ++ +IH+ LP+DPE FVHRSGRTGRAGK+G +I + + R ++ ++ +
Sbjct: 305 GLDVDSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISIALIKPEESRKLKQIKSQSKIE 364
Query: 173 FEFVSPPVVEDVLESSAEQVVATLNGVHPESVEF 206
+ P ++++++ E V L H EF
Sbjct: 365 INEMKIPTGKEIIKAQVEGVFEKLFSEHENYFEF 398
>gi|359729283|ref|ZP_09267979.1| ATP-dependent RNA helicase [Leptospira weilii str. 2006001855]
Length = 535
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 84/134 (62%), Gaps = 1/134 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VF TK D V L S +EALHGD++Q QR++ +NGFR G +LVATDVA RG
Sbjct: 269 LVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMNGFRNGNIEILVATDVAGRG 328
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ NV+ + +Y+LP D E +VHR GRTGRAGK+G A Q ++ +ER G K
Sbjct: 329 IDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKKIERINGIKI 388
Query: 174 EFVSPPVVEDVLES 187
E P ++D+ E+
Sbjct: 389 EAGKIPTLDDLEET 402
>gi|156843946|ref|XP_001645038.1| hypothetical protein Kpol_1072p50 [Vanderwaltozyma polyspora DSM
70294]
gi|160380640|sp|A7TKR8.1|DED1_VANPO RecName: Full=ATP-dependent RNA helicase DED1
gi|156115693|gb|EDO17180.1| hypothetical protein Kpol_1072p50 [Vanderwaltozyma polyspora DSM
70294]
Length = 650
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 106/183 (57%), Gaps = 7/183 (3%)
Query: 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 66
+F +VG+ E + + I LY K++ L DL++ + G T++F +TKR ADE
Sbjct: 378 IFLSVGKVGSTSENITQRI-LYV---EDMDKKSTLLDLLSA-SNDGLTLIFVETKRMADE 432
Query: 67 VS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 125
++ + + A+HGD +Q +RER L F+ G +LVAT VAARGLDIPNV +++Y
Sbjct: 433 LTDFLIMQDFRATAIHGDRTQSERERALAAFKNGNANLLVATAVAARGLDIPNVTHVVNY 492
Query: 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 185
+LP+D + +VHR GRTGRAG G A F R V+ + + + + PP + DV+
Sbjct: 493 DLPSDIDDYVHRIGRTGRAGNTGVATAFFNRGNRNIVKGMYELLAEANQEI-PPFLNDVM 551
Query: 186 ESS 188
S
Sbjct: 552 RES 554
>gi|319778596|ref|YP_004129509.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
gi|317108620|gb|ADU91366.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
Length = 581
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/133 (47%), Positives = 88/133 (66%), Gaps = 1/133 (0%)
Query: 53 KTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111
+ IVFT+TKR A +++ L I I + LHGD++Q QR RT+ G +GK VLVATDVAA
Sbjct: 273 QVIVFTKTKRGATDLAGRLKDIDIKASELHGDMNQGQRNRTIQGLHKGKIKVLVATDVAA 332
Query: 112 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 171
RG+DI + +I+Y+LP E +VHR GRTGRAG++G A + S+RR VR +E +
Sbjct: 333 RGIDIQGISHVINYDLPMQAEDYVHRIGRTGRAGRDGRAYTLALLSERRGVRFIENYINR 392
Query: 172 KFEFVSPPVVEDV 184
+F+ P +E V
Sbjct: 393 EFDIAVIPGLEPV 405
>gi|417777782|ref|ZP_12425596.1| DEAD/DEAH box helicase [Leptospira weilii str. 2006001853]
gi|410782079|gb|EKR66644.1| DEAD/DEAH box helicase [Leptospira weilii str. 2006001853]
Length = 513
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 84/134 (62%), Gaps = 1/134 (0%)
Query: 55 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113
+VF TK D V L S +EALHGD++Q QR++ +NGFR G +LVATDVA RG
Sbjct: 247 LVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMNGFRNGNIEILVATDVAGRG 306
Query: 114 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173
+D+ NV+ + +Y+LP D E +VHR GRTGRAGK+G A Q ++ +ER G K
Sbjct: 307 IDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKKIERINGIKI 366
Query: 174 EFVSPPVVEDVLES 187
E P ++D+ E+
Sbjct: 367 EAGKIPTLDDLEET 380
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,097,750,759
Number of Sequences: 23463169
Number of extensions: 308718780
Number of successful extensions: 1603340
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 39508
Number of HSP's successfully gapped in prelim test: 16638
Number of HSP's that attempted gapping in prelim test: 1431288
Number of HSP's gapped (non-prelim): 134930
length of query: 456
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 310
effective length of database: 8,933,572,693
effective search space: 2769407534830
effective search space used: 2769407534830
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)