Query 012794
Match_columns 456
No_of_seqs 460 out of 2927
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 06:22:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11634 ATP-dependent RNA hel 100.0 4E-44 8.8E-49 384.6 40.2 304 4-317 201-547 (629)
2 KOG0331 ATP-dependent RNA heli 100.0 4.4E-33 9.6E-38 284.9 14.0 167 3-169 291-460 (519)
3 KOG0328 Predicted ATP-dependen 100.0 1.1E-31 2.3E-36 250.2 12.4 163 16-179 231-395 (400)
4 COG0513 SrmB Superfamily II DN 100.0 2.5E-30 5.4E-35 272.9 17.4 181 3-184 225-409 (513)
5 PRK11776 ATP-dependent RNA hel 100.0 1.9E-29 4.2E-34 264.3 23.7 229 22-314 214-443 (460)
6 KOG0330 ATP-dependent RNA heli 100.0 1.9E-30 4.2E-35 251.3 14.8 163 16-179 266-429 (476)
7 KOG0342 ATP-dependent RNA heli 100.0 8E-30 1.7E-34 253.6 17.8 228 7-238 286-522 (543)
8 KOG0333 U5 snRNP-like RNA heli 100.0 1.1E-29 2.5E-34 253.6 13.9 164 3-169 472-636 (673)
9 KOG0340 ATP-dependent RNA heli 100.0 3E-28 6.5E-33 233.6 19.0 164 17-180 218-384 (442)
10 KOG0332 ATP-dependent RNA heli 100.0 6.8E-28 1.5E-32 232.4 15.8 166 17-183 296-470 (477)
11 KOG0343 RNA Helicase [RNA proc 99.9 3.2E-27 6.9E-32 237.2 17.2 231 6-238 269-510 (758)
12 KOG0336 ATP-dependent RNA heli 99.9 1.4E-27 3E-32 232.3 13.1 163 3-166 418-581 (629)
13 KOG0326 ATP-dependent RNA heli 99.9 7.9E-28 1.7E-32 227.7 10.1 173 2-178 277-450 (459)
14 KOG0345 ATP-dependent RNA heli 99.9 1.9E-27 4E-32 235.3 13.0 178 5-183 210-390 (567)
15 PRK04837 ATP-dependent RNA hel 99.9 1E-26 2.2E-31 241.2 16.1 157 20-177 225-382 (423)
16 PRK10590 ATP-dependent RNA hel 99.9 3.9E-26 8.5E-31 238.8 17.7 155 20-175 215-370 (456)
17 PRK04537 ATP-dependent RNA hel 99.9 7.7E-26 1.7E-30 241.8 17.6 154 20-174 227-381 (572)
18 PTZ00110 helicase; Provisional 99.9 8.3E-26 1.8E-30 240.6 17.6 151 20-170 345-497 (545)
19 PRK11192 ATP-dependent RNA hel 99.9 5.9E-25 1.3E-29 228.7 17.6 154 20-174 214-369 (434)
20 KOG0335 ATP-dependent RNA heli 99.9 2.2E-25 4.9E-30 225.0 12.2 147 19-165 297-452 (482)
21 PRK01297 ATP-dependent RNA hel 99.9 1.5E-24 3.2E-29 228.1 18.1 154 20-174 305-459 (475)
22 KOG0347 RNA helicase [RNA proc 99.9 6.3E-26 1.4E-30 227.9 4.8 184 6-193 422-606 (731)
23 PLN00206 DEAD-box ATP-dependen 99.9 3.4E-24 7.3E-29 227.3 17.1 151 20-170 335-488 (518)
24 KOG0327 Translation initiation 99.9 1.6E-24 3.4E-29 210.7 12.5 170 5-178 221-391 (397)
25 KOG0338 ATP-dependent RNA heli 99.9 2.7E-24 5.8E-29 214.6 12.9 151 17-168 390-544 (691)
26 PTZ00424 helicase 45; Provisio 99.9 1.3E-23 2.7E-28 216.4 16.4 159 20-179 236-396 (401)
27 TIGR03817 DECH_helic helicase/ 99.9 2.8E-23 6E-28 227.7 19.6 168 36-207 259-438 (742)
28 KOG0348 ATP-dependent RNA heli 99.9 2.2E-23 4.8E-28 209.1 15.7 152 19-170 390-567 (708)
29 TIGR00614 recQ_fam ATP-depende 99.9 3E-22 6.5E-27 210.3 19.4 132 36-167 211-343 (470)
30 KOG0346 RNA helicase [RNA proc 99.9 1E-22 2.2E-27 200.3 14.3 169 2-170 219-423 (569)
31 PLN03137 ATP-dependent DNA hel 99.9 4E-22 8.7E-27 219.3 19.0 130 38-167 667-797 (1195)
32 KOG0341 DEAD-box protein abstr 99.9 3.3E-23 7.2E-28 200.7 8.9 124 32-157 404-528 (610)
33 KOG0344 ATP-dependent RNA heli 99.9 2.4E-22 5.2E-27 204.6 12.5 152 17-169 353-507 (593)
34 PRK11057 ATP-dependent DNA hel 99.9 1.8E-21 3.9E-26 210.0 18.4 130 36-166 222-352 (607)
35 PRK04914 ATP-dependent helicas 99.9 5.2E-21 1.1E-25 211.8 21.1 164 35-199 478-647 (956)
36 KOG0350 DEAD-box ATP-dependent 99.9 1.8E-21 4E-26 194.2 14.2 151 20-171 399-554 (620)
37 KOG0339 ATP-dependent RNA heli 99.9 9.7E-22 2.1E-26 196.2 12.1 149 17-165 433-583 (731)
38 KOG0334 RNA helicase [RNA proc 99.9 3.9E-21 8.5E-26 206.8 16.4 153 17-169 578-732 (997)
39 TIGR01970 DEAH_box_HrpB ATP-de 99.9 5.6E-21 1.2E-25 210.0 16.6 191 24-236 179-396 (819)
40 KOG4284 DEAD box protein [Tran 99.9 2.1E-21 4.5E-26 198.4 11.1 155 1-158 217-380 (980)
41 PHA02653 RNA helicase NPH-II; 99.9 1.9E-20 4.2E-25 201.4 18.9 200 3-234 340-566 (675)
42 TIGR01389 recQ ATP-dependent D 99.8 1.4E-20 3.1E-25 203.0 16.7 133 33-166 207-340 (591)
43 PRK11664 ATP-dependent RNA hel 99.8 1.1E-20 2.4E-25 208.0 15.8 192 24-237 182-400 (812)
44 PRK12898 secA preprotein trans 99.8 3.6E-19 7.9E-24 189.2 16.9 133 25-159 446-588 (656)
45 PRK13767 ATP-dependent helicas 99.8 1.3E-18 2.8E-23 194.5 20.8 142 48-189 281-433 (876)
46 PRK09751 putative ATP-dependen 99.8 9.4E-19 2E-23 199.9 19.3 150 43-193 236-424 (1490)
47 PRK09200 preprotein translocas 99.8 2.2E-18 4.8E-23 186.9 19.8 126 32-159 408-543 (790)
48 KOG0337 ATP-dependent RNA heli 99.8 1.2E-19 2.5E-24 178.1 8.5 163 17-179 227-390 (529)
49 COG0514 RecQ Superfamily II DN 99.8 2.1E-18 4.5E-23 180.4 17.0 119 50-168 229-348 (590)
50 PRK11131 ATP-dependent RNA hel 99.8 1.2E-18 2.6E-23 195.9 16.1 190 24-235 251-470 (1294)
51 cd00079 HELICc Helicase superf 99.8 3.8E-18 8.3E-23 146.8 14.0 128 25-153 2-131 (131)
52 PRK05298 excinuclease ABC subu 99.8 1.7E-17 3.7E-22 180.0 20.8 141 37-178 431-587 (652)
53 COG1111 MPH1 ERCC4-like helica 99.8 3.7E-18 8.1E-23 171.8 13.9 122 35-157 347-481 (542)
54 TIGR00580 mfd transcription-re 99.8 7.3E-18 1.6E-22 187.4 16.9 113 44-156 653-769 (926)
55 TIGR03714 secA2 accessory Sec 99.7 3.9E-17 8.5E-22 175.8 19.1 127 30-159 402-539 (762)
56 TIGR01967 DEAH_box_HrpA ATP-de 99.7 1.2E-17 2.6E-22 188.5 15.5 191 24-236 244-464 (1283)
57 TIGR00631 uvrb excinuclease AB 99.7 1.5E-17 3.2E-22 179.5 15.3 132 36-168 426-564 (655)
58 PRK02362 ski2-like helicase; P 99.7 2.2E-17 4.7E-22 182.5 16.4 130 40-170 232-409 (737)
59 TIGR00963 secA preprotein tran 99.7 6.2E-17 1.3E-21 173.4 17.9 125 33-159 386-519 (745)
60 TIGR01587 cas3_core CRISPR-ass 99.7 2.5E-17 5.5E-22 167.1 14.3 119 35-156 206-335 (358)
61 PRK10917 ATP-dependent DNA hel 99.7 4.7E-17 1E-21 177.7 16.8 129 25-155 447-587 (681)
62 KOG0349 Putative DEAD-box RNA 99.7 1.1E-17 2.4E-22 164.5 10.2 106 51-156 505-614 (725)
63 TIGR00643 recG ATP-dependent D 99.7 5.8E-17 1.3E-21 175.8 16.8 120 36-155 433-564 (630)
64 PRK10689 transcription-repair 99.7 5.8E-17 1.3E-21 183.9 16.7 127 42-168 800-936 (1147)
65 TIGR02621 cas3_GSU0051 CRISPR- 99.7 1.1E-16 2.4E-21 174.0 14.9 129 20-154 240-388 (844)
66 PRK12906 secA preprotein trans 99.7 3.4E-16 7.3E-21 169.1 16.8 125 32-158 420-554 (796)
67 PF00271 Helicase_C: Helicase 99.7 7.6E-17 1.6E-21 126.9 7.7 76 70-145 2-78 (78)
68 PRK12900 secA preprotein trans 99.7 9.6E-16 2.1E-20 166.7 17.1 126 32-159 578-713 (1025)
69 PRK00254 ski2-like helicase; P 99.7 4.8E-16 1.1E-20 171.3 15.0 125 49-175 236-404 (720)
70 PRK13766 Hef nuclease; Provisi 99.7 5.9E-16 1.3E-20 172.3 15.5 121 35-156 346-478 (773)
71 KOG0354 DEAD-box like helicase 99.7 2.6E-15 5.7E-20 159.2 18.1 123 35-159 394-531 (746)
72 TIGR00603 rad25 DNA repair hel 99.6 1.8E-15 3.9E-20 163.0 14.5 120 35-158 479-608 (732)
73 PHA02558 uvsW UvsW helicase; P 99.6 2.6E-15 5.6E-20 158.9 15.4 113 36-148 328-443 (501)
74 KOG0351 ATP-dependent DNA heli 99.6 2.1E-15 4.6E-20 166.2 13.7 133 37-169 471-604 (941)
75 PRK09401 reverse gyrase; Revie 99.6 1.4E-15 3E-20 173.1 11.7 101 20-129 301-410 (1176)
76 PRK01172 ski2-like helicase; P 99.6 5.9E-15 1.3E-19 161.8 15.4 109 48-157 233-378 (674)
77 COG1201 Lhr Lhr-like helicases 99.6 2.3E-14 5E-19 155.3 18.8 151 46-198 248-403 (814)
78 TIGR01054 rgy reverse gyrase. 99.6 5.1E-15 1.1E-19 168.7 12.4 101 20-128 299-408 (1171)
79 TIGR03158 cas3_cyano CRISPR-as 99.6 1E-14 2.2E-19 148.0 12.8 109 24-142 240-357 (357)
80 KOG0352 ATP-dependent DNA heli 99.5 1.4E-14 3E-19 142.8 8.4 114 52-165 256-370 (641)
81 smart00490 HELICc helicase sup 99.5 2.6E-14 5.6E-19 112.4 8.2 80 66-145 2-82 (82)
82 COG1202 Superfamily II helicas 99.5 2.6E-14 5.5E-19 145.5 10.0 133 25-157 406-553 (830)
83 PRK14701 reverse gyrase; Provi 99.5 5.8E-14 1.3E-18 163.4 9.2 138 19-164 301-463 (1638)
84 KOG0922 DEAH-box RNA helicase 99.5 1.6E-13 3.5E-18 142.6 11.2 210 2-236 211-450 (674)
85 KOG0329 ATP-dependent RNA heli 99.5 1.3E-14 2.8E-19 134.6 2.5 131 5-170 238-369 (387)
86 COG1643 HrpA HrpA-like helicas 99.5 3.7E-13 8E-18 147.0 12.8 210 2-236 211-448 (845)
87 COG1200 RecG RecG-like helicas 99.4 8.7E-12 1.9E-16 131.0 16.7 134 23-158 447-592 (677)
88 PF08152 GUCT: GUCT (NUC152) d 99.4 5.8E-13 1.3E-17 108.8 6.0 95 232-333 1-97 (97)
89 PRK09694 helicase Cas3; Provis 99.4 2.7E-12 5.8E-17 142.0 12.8 107 37-146 546-664 (878)
90 PRK13104 secA preprotein trans 99.4 1.1E-11 2.4E-16 135.2 17.3 125 32-158 424-588 (896)
91 KOG0923 mRNA splicing factor A 99.4 2.1E-12 4.6E-17 133.4 10.3 207 24-249 443-680 (902)
92 COG1204 Superfamily II helicas 99.4 4.5E-12 9.8E-17 138.8 12.9 118 38-155 240-406 (766)
93 PRK12904 preprotein translocas 99.4 7.6E-12 1.7E-16 136.2 14.5 125 32-158 410-574 (830)
94 PLN03142 Probable chromatin-re 99.4 5.9E-12 1.3E-16 140.8 13.6 137 33-169 468-613 (1033)
95 PRK13107 preprotein translocas 99.3 1.9E-11 4.1E-16 133.0 16.9 123 34-158 431-592 (908)
96 KOG0353 ATP-dependent DNA heli 99.3 1.5E-11 3.3E-16 119.9 11.6 127 36-162 299-472 (695)
97 TIGR00595 priA primosomal prot 99.3 1E-11 2.2E-16 131.1 11.4 99 64-162 271-386 (505)
98 COG0556 UvrB Helicase subunit 99.3 4.7E-11 1E-15 121.4 14.1 128 36-164 431-564 (663)
99 PRK05580 primosome assembly pr 99.3 3.1E-11 6.6E-16 132.0 13.2 103 63-165 438-557 (679)
100 COG1061 SSL2 DNA or RNA helica 99.2 6E-11 1.3E-15 123.6 13.4 107 36-143 268-375 (442)
101 KOG0924 mRNA splicing factor A 99.2 1.8E-11 3.8E-16 127.0 9.2 205 3-231 517-753 (1042)
102 COG1197 Mfd Transcription-repa 99.2 4.8E-10 1E-14 124.2 20.5 116 41-156 793-912 (1139)
103 COG4098 comFA Superfamily II D 99.2 2.7E-10 6E-15 110.3 14.9 121 40-162 293-421 (441)
104 PRK11448 hsdR type I restricti 99.2 3.6E-10 7.9E-15 128.6 17.9 93 51-145 698-801 (1123)
105 KOG0920 ATP-dependent RNA heli 99.2 2.5E-10 5.4E-15 124.9 13.5 181 36-233 395-604 (924)
106 KOG0925 mRNA splicing factor A 99.1 1.2E-09 2.7E-14 109.8 15.1 204 2-234 207-446 (699)
107 KOG0950 DNA polymerase theta/e 99.1 2.3E-10 5.1E-15 123.2 9.6 116 50-165 459-619 (1008)
108 KOG0947 Cytoplasmic exosomal R 99.0 1.8E-09 3.9E-14 116.0 12.6 106 52-157 568-723 (1248)
109 COG1205 Distinct helicase fami 99.0 1.8E-09 3.8E-14 120.2 13.0 151 20-170 265-437 (851)
110 KOG0951 RNA helicase BRR2, DEA 99.0 7.1E-09 1.5E-13 114.1 15.5 140 24-164 512-709 (1674)
111 KOG4150 Predicted ATP-dependen 99.0 7.2E-09 1.6E-13 106.0 14.1 143 49-191 523-677 (1034)
112 KOG0953 Mitochondrial RNA heli 98.9 9.4E-09 2E-13 105.2 11.1 163 6-175 312-491 (700)
113 KOG0926 DEAH-box RNA helicase 98.9 1.4E-08 3.1E-13 107.5 12.8 115 77-205 607-739 (1172)
114 COG1110 Reverse gyrase [DNA re 98.9 2.2E-08 4.8E-13 108.9 14.3 99 20-128 309-416 (1187)
115 KOG0952 DNA/RNA helicase MER3/ 98.9 2.4E-08 5.3E-13 108.6 14.1 122 43-164 341-498 (1230)
116 PRK12903 secA preprotein trans 98.8 6.6E-08 1.4E-12 105.0 14.1 123 33-158 407-540 (925)
117 KOG0331 ATP-dependent RNA heli 98.8 5.2E-08 1.1E-12 101.1 12.5 119 51-179 165-302 (519)
118 KOG0948 Nuclear exosomal RNA h 98.8 6.4E-09 1.4E-13 109.4 5.4 106 51-156 383-538 (1041)
119 KOG0921 Dosage compensation co 98.7 1.2E-06 2.6E-11 94.2 21.3 118 38-156 627-773 (1282)
120 COG1203 CRISPR-associated heli 98.7 3.6E-08 7.7E-13 109.0 10.0 116 40-158 429-551 (733)
121 KOG0384 Chromodomain-helicase 98.7 8.4E-08 1.8E-12 105.9 11.8 136 34-169 681-825 (1373)
122 PRK12326 preprotein translocas 98.7 4E-07 8.7E-12 97.7 15.3 124 33-158 408-548 (764)
123 KOG0390 DNA repair protein, SN 98.6 1.7E-07 3.6E-12 101.4 11.2 128 26-153 568-701 (776)
124 KOG0385 Chromatin remodeling c 98.6 2.6E-07 5.7E-12 97.9 11.5 139 32-170 467-614 (971)
125 PF03880 DbpA: DbpA RNA bindin 98.6 4.4E-08 9.5E-13 76.2 4.3 61 250-317 1-61 (74)
126 PRK12899 secA preprotein trans 98.6 1.4E-06 3E-11 96.0 15.8 124 32-158 548-682 (970)
127 PF00098 zf-CCHC: Zinc knuckle 98.5 4.7E-08 1E-12 54.1 1.8 17 440-456 2-18 (18)
128 KOG0392 SNF2 family DNA-depend 98.5 9E-07 1.9E-11 97.8 11.9 119 35-153 1309-1448(1549)
129 PRK12901 secA preprotein trans 98.5 2.6E-06 5.6E-11 94.2 15.0 124 33-158 609-742 (1112)
130 KOG0387 Transcription-coupled 98.4 1E-06 2.3E-11 93.8 10.6 121 33-153 527-652 (923)
131 KOG0391 SNF2 family DNA-depend 98.4 1.9E-06 4E-11 94.7 12.6 120 34-153 1258-1381(1958)
132 PRK13103 secA preprotein trans 98.4 4.5E-06 9.8E-11 91.8 14.8 124 32-158 429-592 (913)
133 PRK10590 ATP-dependent RNA hel 98.4 1.4E-05 3E-10 84.0 17.1 67 53-123 77-154 (456)
134 COG0513 SrmB Superfamily II DN 98.3 3.8E-06 8.2E-11 89.4 9.9 108 54-172 102-229 (513)
135 COG4581 Superfamily II RNA hel 98.2 1.7E-06 3.7E-11 96.3 7.2 105 51-155 379-535 (1041)
136 KOG0330 ATP-dependent RNA heli 98.2 1.8E-05 4E-10 78.4 11.6 249 38-326 117-405 (476)
137 KOG0339 ATP-dependent RNA heli 98.2 2.1E-05 4.6E-10 80.2 12.2 113 53-175 298-429 (731)
138 KOG0338 ATP-dependent RNA heli 98.2 2.1E-05 4.6E-10 80.3 12.1 125 38-173 237-383 (691)
139 CHL00122 secA preprotein trans 98.1 4.4E-05 9.5E-10 83.8 15.3 85 33-117 405-491 (870)
140 COG0553 HepA Superfamily II DN 98.1 2.6E-05 5.6E-10 88.1 12.9 120 36-155 692-818 (866)
141 KOG1002 Nucleotide excision re 98.1 2E-05 4.3E-10 80.2 10.5 122 35-156 619-748 (791)
142 KOG0388 SNF2 family DNA-depend 98.1 1.8E-05 3.9E-10 83.5 10.0 119 35-153 1027-1148(1185)
143 KOG1123 RNA polymerase II tran 98.1 3.8E-05 8.2E-10 78.4 11.7 110 32-145 523-635 (776)
144 TIGR01407 dinG_rel DnaQ family 98.0 4.3E-05 9.3E-10 86.3 13.0 106 50-156 673-813 (850)
145 KOG0949 Predicted helicase, DE 98.0 1.6E-05 3.5E-10 86.6 9.0 83 76-158 964-1049(1330)
146 KOG0389 SNF2 family DNA-depend 98.0 4.4E-05 9.5E-10 81.7 11.7 123 35-157 760-888 (941)
147 COG4096 HsdR Type I site-speci 98.0 3.7E-05 7.9E-10 83.1 10.5 92 51-144 426-525 (875)
148 TIGR00348 hsdR type I site-spe 97.9 0.00013 2.7E-09 80.3 13.9 93 51-144 514-634 (667)
149 COG1198 PriA Primosomal protei 97.9 3.5E-05 7.6E-10 84.0 8.6 102 64-165 493-611 (730)
150 PRK12902 secA preprotein trans 97.9 0.00029 6.3E-09 77.6 15.4 85 33-117 420-506 (939)
151 KOG0386 Chromatin remodeling c 97.8 8.9E-05 1.9E-09 81.2 10.4 161 34-194 708-882 (1157)
152 KOG1000 Chromatin remodeling p 97.8 0.00012 2.6E-09 74.8 9.7 119 36-154 472-598 (689)
153 PF13307 Helicase_C_2: Helicas 97.8 9.3E-05 2E-09 67.0 8.2 104 51-156 9-149 (167)
154 PRK04537 ATP-dependent RNA hel 97.5 0.014 3E-07 63.2 21.3 68 52-123 85-164 (572)
155 PF06862 DUF1253: Protein of u 97.4 0.0033 7.1E-08 65.0 13.9 146 20-165 258-423 (442)
156 KOG1015 Transcription regulato 97.3 0.0019 4.2E-08 70.6 11.6 122 33-154 1123-1272(1567)
157 COG0653 SecA Preprotein transl 97.3 0.0019 4.1E-08 70.9 11.5 122 35-158 412-546 (822)
158 KOG0951 RNA helicase BRR2, DEA 97.3 0.002 4.3E-08 72.5 11.4 157 4-165 1313-1502(1674)
159 KOG0340 ATP-dependent RNA heli 97.3 0.0026 5.6E-08 62.8 10.9 54 51-108 75-133 (442)
160 PRK08074 bifunctional ATP-depe 97.2 0.0036 7.9E-08 71.4 13.0 119 50-168 751-906 (928)
161 PRK11634 ATP-dependent RNA hel 97.2 0.0053 1.1E-07 67.1 13.7 69 51-123 74-154 (629)
162 COG1199 DinG Rad3-related DNA 97.2 0.0065 1.4E-07 66.9 14.4 94 51-147 479-607 (654)
163 TIGR00596 rad1 DNA repair prot 97.1 0.0016 3.4E-08 72.5 9.0 40 34-73 268-317 (814)
164 KOG0336 ATP-dependent RNA heli 97.1 0.002 4.2E-08 64.7 8.0 69 51-123 294-372 (629)
165 COG4889 Predicted helicase [Ge 97.0 0.00059 1.3E-08 74.0 4.1 102 52-153 461-584 (1518)
166 PRK11776 ATP-dependent RNA hel 97.0 0.0017 3.7E-08 68.3 7.3 87 34-124 51-153 (460)
167 KOG0335 ATP-dependent RNA heli 97.0 0.0026 5.6E-08 65.8 8.1 68 52-123 153-231 (482)
168 PF13871 Helicase_C_4: Helicas 96.8 0.029 6.4E-07 54.6 14.0 79 91-169 52-142 (278)
169 TIGR00595 priA primosomal prot 96.8 0.014 3.1E-07 62.1 12.9 89 35-124 8-99 (505)
170 KOG0921 Dosage compensation co 96.8 0.0072 1.6E-07 66.0 9.9 23 284-310 1074-1097(1282)
171 PRK07246 bifunctional ATP-depe 96.7 0.016 3.4E-07 65.3 12.7 77 49-128 645-724 (820)
172 PTZ00110 helicase; Provisional 96.7 0.03 6.5E-07 60.3 14.0 68 52-123 204-282 (545)
173 PRK11747 dinG ATP-dependent DN 96.6 0.015 3.3E-07 64.4 11.8 77 50-129 533-616 (697)
174 PRK11192 ATP-dependent RNA hel 96.6 0.0085 1.8E-07 62.5 9.4 68 52-123 74-152 (434)
175 PRK05580 primosome assembly pr 96.6 0.014 3E-07 64.4 11.3 91 33-124 171-264 (679)
176 KOG4439 RNA polymerase II tran 96.6 0.013 2.9E-07 62.6 10.2 120 34-153 727-852 (901)
177 PRK10917 ATP-dependent DNA hel 96.5 0.0085 1.8E-07 66.2 9.1 91 34-124 292-389 (681)
178 KOG0334 RNA helicase [RNA proc 96.5 0.033 7.3E-07 62.1 13.0 106 53-169 440-567 (997)
179 TIGR00643 recG ATP-dependent D 96.3 0.015 3.2E-07 63.8 9.0 89 35-123 267-362 (630)
180 TIGR03117 cas_csf4 CRISPR-asso 96.3 0.043 9.4E-07 59.6 12.1 78 50-129 469-561 (636)
181 TIGR00580 mfd transcription-re 96.0 0.024 5.2E-07 64.4 9.2 90 35-124 483-579 (926)
182 KOG0333 U5 snRNP-like RNA heli 96.0 0.052 1.1E-06 56.4 10.5 69 51-123 322-401 (673)
183 TIGR03817 DECH_helic helicase/ 96.0 0.07 1.5E-06 59.6 12.6 87 50-141 80-187 (742)
184 PRK14873 primosome assembly pr 96.0 0.035 7.6E-07 60.9 10.0 91 34-125 170-264 (665)
185 PF13696 zf-CCHC_2: Zinc knuck 95.9 0.0029 6.2E-08 40.2 0.7 17 440-456 10-26 (32)
186 smart00343 ZnF_C2HC zinc finge 95.7 0.0045 9.8E-08 37.6 1.0 15 441-455 2-16 (26)
187 PTZ00368 universal minicircle 95.6 0.029 6.3E-07 49.6 6.2 67 379-456 28-95 (148)
188 TIGR02562 cas3_yersinia CRISPR 95.4 0.054 1.2E-06 61.2 8.8 90 54-146 759-881 (1110)
189 PF13917 zf-CCHC_3: Zinc knuck 95.3 0.0098 2.1E-07 40.5 1.5 18 439-456 5-22 (42)
190 KOG0342 ATP-dependent RNA heli 95.3 0.15 3.2E-06 52.8 10.6 109 51-170 154-283 (543)
191 KOG0341 DEAD-box protein abstr 95.3 0.12 2.6E-06 51.9 9.6 108 51-169 246-378 (610)
192 PRK10689 transcription-repair 95.2 0.075 1.6E-06 61.9 9.2 91 33-123 630-727 (1147)
193 COG1198 PriA Primosomal protei 95.1 0.048 1E-06 60.0 7.1 92 31-123 224-318 (730)
194 PLN00206 DEAD-box ATP-dependen 95.0 0.2 4.3E-06 53.7 11.3 69 51-123 196-275 (518)
195 KOG0329 ATP-dependent RNA heli 95.0 0.56 1.2E-05 44.7 12.7 68 53-124 112-191 (387)
196 KOG3973 Uncharacterized conser 95.0 0.29 6.2E-06 48.2 11.1 9 161-169 166-174 (465)
197 PTZ00368 universal minicircle 94.8 0.12 2.5E-06 45.7 7.5 68 379-456 53-121 (148)
198 smart00492 HELICc3 helicase su 94.8 0.25 5.5E-06 43.3 9.5 47 83-129 30-79 (141)
199 TIGR00604 rad3 DNA repair heli 94.8 0.36 7.9E-06 53.7 13.0 78 51-129 522-615 (705)
200 smart00491 HELICc2 helicase su 94.6 0.21 4.5E-06 43.8 8.5 42 88-129 32-80 (142)
201 COG1111 MPH1 ERCC4-like helica 94.5 0.36 7.7E-06 50.3 11.1 70 51-125 58-138 (542)
202 KOG0345 ATP-dependent RNA heli 94.5 0.5 1.1E-05 48.8 11.8 106 53-168 81-208 (567)
203 KOG0701 dsRNA-specific nucleas 94.3 0.023 5.1E-07 66.6 2.3 93 52-144 293-398 (1606)
204 KOG0347 RNA helicase [RNA proc 94.3 0.077 1.7E-06 55.5 5.7 66 54-123 266-345 (731)
205 COG1110 Reverse gyrase [DNA re 94.2 0.087 1.9E-06 58.9 6.1 60 50-109 124-190 (1187)
206 KOG1016 Predicted DNA helicase 93.6 0.23 4.9E-06 54.0 7.8 109 51-159 719-849 (1387)
207 PRK14701 reverse gyrase; Provi 93.6 0.2 4.4E-06 60.2 8.2 60 50-109 121-187 (1638)
208 KOG0326 ATP-dependent RNA heli 93.5 0.095 2.1E-06 51.4 4.4 111 52-173 154-284 (459)
209 KOG1001 Helicase-like transcri 93.4 0.049 1.1E-06 59.6 2.6 119 34-152 520-643 (674)
210 TIGR01054 rgy reverse gyrase. 93.3 0.19 4.1E-06 58.8 7.2 75 34-108 103-186 (1171)
211 COG1200 RecG RecG-like helicas 93.2 0.36 7.7E-06 52.2 8.5 86 39-124 299-390 (677)
212 PRK14873 primosome assembly pr 92.9 0.33 7.2E-06 53.4 8.1 69 90-165 462-546 (665)
213 PRK04837 ATP-dependent RNA hel 92.0 0.69 1.5E-05 48.1 8.9 69 52-124 84-163 (423)
214 KOG0337 ATP-dependent RNA heli 91.7 1.3 2.9E-05 45.2 10.0 70 51-124 90-170 (529)
215 COG5082 AIR1 Arginine methyltr 91.6 0.075 1.6E-06 48.3 1.0 16 440-455 62-77 (190)
216 COG1197 Mfd Transcription-repa 91.6 0.73 1.6E-05 52.8 8.8 88 36-123 627-721 (1139)
217 cd00268 DEADc DEAD-box helicas 91.4 3 6.5E-05 38.2 11.6 69 51-123 69-148 (203)
218 COG5082 AIR1 Arginine methyltr 91.3 0.088 1.9E-06 47.9 1.1 54 379-455 61-115 (190)
219 PF14787 zf-CCHC_5: GAG-polypr 91.2 0.11 2.3E-06 33.8 1.1 15 440-454 4-18 (36)
220 TIGR00614 recQ_fam ATP-depende 91.2 0.81 1.8E-05 48.4 8.4 59 50-108 50-109 (470)
221 PRK13766 Hef nuclease; Provisi 91.0 3 6.5E-05 46.9 13.3 70 50-124 57-137 (773)
222 KOG0343 RNA Helicase [RNA proc 90.8 1.2 2.6E-05 47.1 8.7 110 52-173 142-271 (758)
223 KOG0328 Predicted ATP-dependen 90.8 1.4 3E-05 42.8 8.6 119 51-174 95-227 (400)
224 KOG0348 ATP-dependent RNA heli 90.7 2.7 5.9E-05 44.3 11.2 114 51-169 211-352 (708)
225 PF15288 zf-CCHC_6: Zinc knuck 90.5 0.13 2.9E-06 34.4 1.1 16 440-455 3-20 (40)
226 PF02399 Herpes_ori_bp: Origin 90.4 1.5 3.3E-05 48.6 9.7 113 36-155 267-386 (824)
227 PF00270 DEAD: DEAD/DEAH box h 89.9 3.7 8.1E-05 36.0 10.5 86 35-124 25-125 (169)
228 PRK01297 ATP-dependent RNA hel 89.3 1.7 3.7E-05 45.9 9.0 69 52-123 163-242 (475)
229 PRK09401 reverse gyrase; Revie 89.1 1.1 2.4E-05 52.6 7.8 90 33-123 104-206 (1176)
230 TIGR01389 recQ ATP-dependent D 88.3 2 4.4E-05 46.8 9.0 59 50-108 52-111 (591)
231 PRK09751 putative ATP-dependen 87.2 1.7 3.7E-05 51.9 7.9 70 51-124 37-130 (1490)
232 PLN03137 ATP-dependent DNA hel 87.0 2.3 5E-05 49.2 8.5 58 51-108 500-560 (1195)
233 KOG4400 E3 ubiquitin ligase in 87.0 0.28 6E-06 47.7 1.1 18 439-456 144-161 (261)
234 PF14392 zf-CCHC_4: Zinc knuck 86.4 0.26 5.7E-06 34.8 0.5 17 440-456 33-49 (49)
235 KOG2340 Uncharacterized conser 85.7 2.5 5.3E-05 44.5 7.2 113 52-164 553-675 (698)
236 PF10593 Z1: Z1 domain; Inter 85.7 7.2 0.00016 37.4 10.1 87 75-166 111-202 (239)
237 KOG0346 RNA helicase [RNA proc 85.1 2.5 5.5E-05 43.5 6.8 66 52-121 94-173 (569)
238 KOG0109 RNA-binding protein LA 84.6 0.4 8.7E-06 46.3 0.9 16 441-456 163-178 (346)
239 KOG0298 DEAD box-containing he 84.4 1.6 3.4E-05 50.3 5.5 112 36-152 1203-1319(1394)
240 PRK11057 ATP-dependent DNA hel 83.3 4.7 0.0001 44.1 8.7 59 50-108 64-123 (607)
241 PF12683 DUF3798: Protein of u 82.4 5.6 0.00012 38.4 7.6 133 24-181 33-174 (275)
242 PRK13767 ATP-dependent helicas 82.3 4 8.8E-05 46.6 7.9 69 52-124 85-178 (876)
243 TIGR02621 cas3_GSU0051 CRISPR- 79.9 4 8.8E-05 46.0 6.6 52 52-107 62-142 (844)
244 KOG1513 Nuclear helicase MOP-3 79.3 2.9 6.4E-05 46.0 5.0 54 93-146 850-911 (1300)
245 KOG0350 DEAD-box ATP-dependent 77.5 6.1 0.00013 41.4 6.5 72 52-123 216-300 (620)
246 PTZ00424 helicase 45; Provisio 76.6 16 0.00034 37.4 9.6 70 51-124 96-176 (401)
247 TIGR00963 secA preprotein tran 75.5 13 0.00029 41.3 8.9 62 41-109 88-154 (745)
248 PRK12898 secA preprotein trans 74.2 12 0.00027 41.0 8.2 54 49-108 142-200 (656)
249 KOG0107 Alternative splicing f 72.6 3.7 8.1E-05 37.0 3.1 16 441-456 103-118 (195)
250 cd00046 DEXDc DEAD-like helica 71.3 28 0.0006 28.5 8.3 72 34-109 10-88 (144)
251 PRK12899 secA preprotein trans 70.0 17 0.00038 41.4 8.3 52 51-108 135-191 (970)
252 PRK13104 secA preprotein trans 69.7 20 0.00043 40.7 8.7 61 41-108 114-179 (896)
253 PF11496 HDA2-3: Class II hist 69.2 36 0.00077 33.7 9.6 123 34-156 94-244 (297)
254 TIGR00631 uvrb excinuclease AB 69.0 42 0.00091 37.2 11.0 109 29-139 34-174 (655)
255 cd01524 RHOD_Pyr_redox Member 68.4 15 0.00032 28.8 5.6 42 44-85 44-86 (90)
256 COG1205 Distinct helicase fami 67.0 43 0.00093 38.3 10.8 121 51-175 115-259 (851)
257 PRK00254 ski2-like helicase; P 65.3 20 0.00042 40.2 7.7 82 35-123 50-143 (720)
258 smart00487 DEXDc DEAD-like hel 64.2 71 0.0015 27.9 10.0 86 34-123 34-134 (201)
259 COG0052 RpsB Ribosomal protein 64.0 15 0.00031 35.2 5.4 38 36-73 48-85 (252)
260 PRK02362 ski2-like helicase; P 63.1 14 0.00031 41.4 6.1 82 35-123 50-142 (737)
261 KOG4400 E3 ubiquitin ligase in 62.0 3.4 7.4E-05 40.1 0.8 17 440-456 94-110 (261)
262 PRK01172 ski2-like helicase; P 61.2 21 0.00045 39.6 6.9 82 35-123 48-140 (674)
263 smart00493 TOPRIM topoisomeras 60.0 25 0.00055 26.4 5.4 59 54-113 2-60 (76)
264 PRK05728 DNA polymerase III su 59.1 27 0.00059 30.5 6.0 82 33-127 10-94 (142)
265 cd01523 RHOD_Lact_B Member of 58.2 16 0.00036 29.2 4.2 42 44-85 54-96 (100)
266 KOG4284 DEAD box protein [Tran 57.7 48 0.001 36.3 8.3 69 51-124 93-173 (980)
267 PRK09200 preprotein translocas 56.9 39 0.00085 38.1 8.1 53 50-108 118-176 (790)
268 TIGR00696 wecB_tagA_cpsF bacte 56.1 58 0.0013 29.6 7.8 67 38-104 34-104 (177)
269 COG0514 RecQ Superfamily II DN 55.5 34 0.00074 37.1 7.1 58 51-108 57-115 (590)
270 PRK05298 excinuclease ABC subu 53.5 1.2E+02 0.0026 33.6 11.2 109 30-140 38-178 (652)
271 KOG1257 NADP+-dependent malic 52.8 3.2E+02 0.007 29.3 15.1 129 54-196 115-252 (582)
272 KOG0389 SNF2 family DNA-depend 52.7 51 0.0011 36.8 7.8 67 44-112 441-511 (941)
273 PF05918 API5: Apoptosis inhib 52.6 4.6 0.0001 43.3 0.0 10 160-169 264-273 (556)
274 PF14617 CMS1: U3-containing 9 50.8 45 0.00097 32.2 6.4 69 52-123 127-206 (252)
275 KOG2044 5'-3' exonuclease HKE1 50.5 7 0.00015 43.0 1.0 15 441-455 263-277 (931)
276 PF03808 Glyco_tran_WecB: Glyc 50.4 74 0.0016 28.6 7.5 69 37-105 33-106 (172)
277 COG0610 Type I site-specific r 49.5 1.4E+02 0.0031 34.6 11.3 83 89-172 580-667 (962)
278 COG4907 Predicted membrane pro 49.2 15 0.00031 38.1 2.9 43 267-313 488-530 (595)
279 cd06533 Glyco_transf_WecG_TagA 47.9 1E+02 0.0022 27.7 8.0 68 37-104 31-103 (171)
280 PRK12904 preprotein translocas 47.8 71 0.0015 36.2 8.2 63 39-108 111-178 (830)
281 PF04364 DNA_pol3_chi: DNA pol 47.5 47 0.001 28.8 5.5 80 38-128 15-96 (137)
282 KOG0119 Splicing factor 1/bran 47.3 9.3 0.0002 39.8 1.2 17 440-456 287-303 (554)
283 cd01535 4RHOD_Repeat_4 Member 46.1 52 0.0011 28.7 5.7 45 40-84 38-84 (145)
284 PRK06646 DNA polymerase III su 45.1 73 0.0016 28.3 6.4 42 32-73 9-51 (154)
285 cd01444 GlpE_ST GlpE sulfurtra 44.8 52 0.0011 25.7 5.1 43 42-84 47-91 (96)
286 PF12614 RRF_GI: Ribosome recy 43.4 98 0.0021 26.5 6.5 86 129-230 7-96 (128)
287 COG1201 Lhr Lhr-like helicases 43.1 48 0.001 37.5 6.0 67 53-123 75-154 (814)
288 PF13245 AAA_19: Part of AAA d 41.5 40 0.00088 25.9 3.8 40 32-71 18-62 (76)
289 KOG0385 Chromatin remodeling c 41.1 1.2E+02 0.0025 34.1 8.2 57 49-107 215-274 (971)
290 smart00450 RHOD Rhodanese Homo 41.0 38 0.00082 26.1 3.7 37 49-85 54-92 (100)
291 cd01526 RHOD_ThiF Member of th 40.3 41 0.00089 28.1 4.0 43 49-92 70-115 (122)
292 PHA02653 RNA helicase NPH-II; 38.5 66 0.0014 35.8 6.2 68 51-124 222-297 (675)
293 COG4907 Predicted membrane pro 38.3 25 0.00053 36.5 2.6 20 110-129 289-308 (595)
294 COG4098 comFA Superfamily II D 38.0 2.5E+02 0.0054 28.6 9.4 125 26-164 118-250 (441)
295 PHA02558 uvsW UvsW helicase; P 37.0 1.6E+02 0.0035 31.4 8.7 80 33-123 138-227 (501)
296 COG1204 Superfamily II helicas 36.1 92 0.002 35.2 6.9 98 36-140 59-176 (766)
297 PF12353 eIF3g: Eukaryotic tra 35.9 19 0.00041 31.0 1.2 16 440-456 108-123 (128)
298 COG1512 Beta-propeller domains 35.7 46 0.00099 32.5 3.9 51 80-145 39-93 (271)
299 COG1922 WecG Teichoic acid bio 35.6 1.9E+02 0.0041 28.0 8.0 69 37-105 93-166 (253)
300 cd01529 4RHOD_Repeats Member o 34.8 73 0.0016 25.1 4.5 36 49-84 54-91 (96)
301 cd01533 4RHOD_Repeat_2 Member 34.6 96 0.0021 25.1 5.3 36 50-85 65-103 (109)
302 cd00032 CASc Caspase, interleu 34.4 4.1E+02 0.0088 25.1 10.4 84 50-139 8-108 (243)
303 PF07652 Flavi_DEAD: Flaviviru 34.1 57 0.0012 28.7 3.9 34 40-73 21-55 (148)
304 TIGR01659 sex-lethal sex-letha 33.4 5.2E+02 0.011 26.1 11.8 58 250-316 194-256 (346)
305 smart00115 CASc Caspase, inter 33.1 2.9E+02 0.0063 26.2 9.0 83 50-138 7-106 (241)
306 COG2519 GCD14 tRNA(1-methylade 33.1 1.1E+02 0.0025 29.4 6.0 49 24-74 163-211 (256)
307 KOG0383 Predicted helicase [Ge 33.1 45 0.00097 36.9 3.7 78 35-112 614-695 (696)
308 cd01528 RHOD_2 Member of the R 32.9 1.1E+02 0.0024 24.3 5.3 37 50-86 57-95 (101)
309 PF10083 DUF2321: Uncharacteri 32.9 1.9E+02 0.0041 25.7 6.8 71 119-226 55-125 (158)
310 PF09547 Spore_IV_A: Stage IV 32.6 5.2E+02 0.011 27.3 10.9 76 35-117 163-246 (492)
311 COG2927 HolC DNA polymerase II 32.2 1.4E+02 0.0029 26.3 5.9 79 40-129 17-97 (144)
312 cd01521 RHOD_PspE2 Member of t 31.7 79 0.0017 25.7 4.3 39 47-85 60-101 (110)
313 cd01449 TST_Repeat_2 Thiosulfa 31.7 1.2E+02 0.0025 24.8 5.4 45 40-84 65-113 (118)
314 KOG1802 RNA helicase nonsense 31.4 1.9E+02 0.0041 32.0 7.8 40 39-80 444-484 (935)
315 PRK00162 glpE thiosulfate sulf 30.9 1E+02 0.0022 24.8 4.9 45 41-85 48-94 (108)
316 KOG0116 RasGAP SH3 binding pro 30.8 2.8E+02 0.006 29.0 8.8 24 263-286 298-321 (419)
317 cd01520 RHOD_YbbB Member of th 30.4 91 0.002 26.2 4.6 38 48-85 83-122 (128)
318 KOG0351 ATP-dependent DNA heli 30.4 94 0.002 35.9 5.8 57 52-108 305-364 (941)
319 TIGR03714 secA2 accessory Sec 30.3 2.1E+02 0.0046 32.3 8.4 61 41-108 102-172 (762)
320 KOG0327 Translation initiation 30.3 1.3E+02 0.0029 30.7 6.2 20 52-71 95-114 (397)
321 COG4152 ABC-type uncharacteriz 30.2 5.3E+02 0.011 25.2 11.0 81 37-124 165-248 (300)
322 PRK03692 putative UDP-N-acetyl 30.2 2.5E+02 0.0055 26.9 8.0 67 38-104 91-161 (243)
323 PRK14086 dnaA chromosomal repl 30.1 7.8E+02 0.017 27.1 13.9 26 264-289 553-579 (617)
324 cd01522 RHOD_1 Member of the R 30.0 1E+02 0.0022 25.5 4.8 37 49-85 62-100 (117)
325 cd01527 RHOD_YgaP Member of th 29.2 83 0.0018 24.8 3.9 36 49-84 52-89 (99)
326 KOG0352 ATP-dependent DNA heli 29.1 72 0.0016 33.2 4.1 58 51-108 61-121 (641)
327 COG1512 Beta-propeller domains 28.3 68 0.0015 31.3 3.8 8 101-108 101-108 (271)
328 KOG0119 Splicing factor 1/bran 27.8 31 0.00066 36.2 1.3 17 440-456 263-279 (554)
329 COG5222 Uncharacterized conser 27.5 27 0.00058 34.1 0.8 17 440-456 178-194 (427)
330 PF01751 Toprim: Toprim domain 27.1 39 0.00086 27.2 1.7 60 54-113 1-73 (100)
331 PRK13103 secA preprotein trans 27.0 2.6E+02 0.0057 32.1 8.4 65 38-109 111-180 (913)
332 cd01518 RHOD_YceA Member of th 26.7 84 0.0018 25.0 3.6 37 49-85 59-97 (101)
333 COG4371 Predicted membrane pro 25.8 1.4E+02 0.003 28.7 5.1 55 347-405 47-105 (334)
334 cd00188 TOPRIM Topoisomerase-p 25.5 2E+02 0.0044 20.8 5.4 60 54-114 2-61 (83)
335 cd05212 NAD_bind_m-THF_DH_Cycl 25.4 4.5E+02 0.0097 22.8 9.0 84 39-129 13-103 (140)
336 cd00158 RHOD Rhodanese Homolog 25.3 1.2E+02 0.0026 22.8 4.1 36 49-84 48-85 (89)
337 COG0353 RecR Recombinational D 25.0 1.6E+02 0.0034 27.3 5.2 63 51-113 78-149 (198)
338 TIGR00036 dapB dihydrodipicoli 24.6 2.1E+02 0.0046 27.6 6.6 57 52-108 70-126 (266)
339 PLN02160 thiosulfate sulfurtra 24.4 1.5E+02 0.0033 25.4 4.9 37 49-85 79-117 (136)
340 COG4029 Uncharacterized protei 24.2 4.5E+02 0.0098 22.4 8.2 44 262-314 14-57 (142)
341 PRK10287 thiosulfate:cyanide s 24.1 2.3E+02 0.005 23.1 5.7 34 51-84 60-94 (104)
342 cd01534 4RHOD_Repeat_3 Member 23.8 99 0.0022 24.3 3.5 34 51-84 56-90 (95)
343 PTZ00254 40S ribosomal protein 23.7 2.3E+02 0.0051 27.3 6.4 66 36-108 56-126 (249)
344 cd01532 4RHOD_Repeat_1 Member 23.7 1.2E+02 0.0026 23.8 3.9 36 50-85 49-88 (92)
345 cd01448 TST_Repeat_1 Thiosulfa 23.2 1.7E+02 0.0037 24.0 5.0 37 49-85 77-116 (122)
346 COG5179 TAF1 Transcription ini 23.2 37 0.00079 36.6 0.9 18 438-455 937-956 (968)
347 KOG2560 RNA splicing factor - 23.1 21 0.00045 37.0 -0.9 16 439-454 113-128 (529)
348 cd01027 TOPRIM_RNase_M5_like T 22.9 2.5E+02 0.0055 21.8 5.5 52 54-109 3-54 (81)
349 PRK11664 ATP-dependent RNA hel 22.9 2.9E+02 0.0062 31.6 8.0 85 33-127 29-125 (812)
350 cd01519 RHOD_HSP67B2 Member of 22.6 1E+02 0.0022 24.6 3.3 35 50-84 65-101 (106)
351 PF06200 tify: tify domain; I 22.5 1.4E+02 0.0029 19.7 3.1 25 288-314 8-33 (36)
352 PRK13107 preprotein translocas 22.1 3.1E+02 0.0067 31.6 7.8 64 38-108 111-179 (908)
353 PRK15483 type III restriction- 21.7 2.5E+02 0.0054 32.6 7.1 70 100-169 501-580 (986)
354 COG0135 TrpF Phosphoribosylant 21.5 6.7E+02 0.015 23.4 9.1 58 37-96 39-97 (208)
355 PRK12311 rpsB 30S ribosomal pr 21.5 3.8E+02 0.0083 26.9 7.7 36 38-73 45-80 (326)
356 TIGR01648 hnRNP-R-Q heterogene 21.4 7.5E+02 0.016 27.0 10.4 56 250-316 234-290 (578)
357 cd00532 MGS-like MGS-like doma 20.9 2.7E+02 0.0058 22.9 5.6 73 29-108 3-76 (112)
358 PRK06739 pyruvate kinase; Vali 20.7 5.5E+02 0.012 26.1 8.7 78 38-115 193-279 (352)
359 cd01525 RHOD_Kc Member of the 20.2 1.3E+02 0.0027 24.0 3.4 35 51-85 65-101 (105)
360 cd01447 Polysulfide_ST Polysul 20.1 96 0.0021 24.5 2.7 36 49-84 59-96 (103)
No 1
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=4e-44 Score=384.56 Aligned_cols=304 Identities=26% Similarity=0.395 Sum_probs=257.6
Q ss_pred ccccCCCccccCCcccccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeC
Q 012794 4 YFVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHG 82 (456)
Q Consensus 4 ~l~~~~~i~~v~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg 82 (456)
|++++..|.+. ........+.+.|+.+....|.+.|..+|... ...++||||+|+..+++|++.|.. ++.+..+||
T Consensus 201 ~l~~~~~i~i~--~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhg 277 (629)
T PRK11634 201 FMKEPQEVRIQ--SSVTTRPDISQSYWTVWGMRKNEALVRFLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNG 277 (629)
T ss_pred HcCCCeEEEcc--CccccCCceEEEEEEechhhHHHHHHHHHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeC
Confidence 44445444433 22344567888888888888999999988765 347899999999999999999985 789999999
Q ss_pred CCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHH
Q 012794 83 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 162 (456)
Q Consensus 83 ~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~ 162 (456)
+|++.+|++++++|++++++||||||++++|||+|+|++|||||+|.++++|+||+|||||+|+.|.+++|+.+.+...+
T Consensus 278 d~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l 357 (629)
T PRK11634 278 DMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLL 357 (629)
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHHhcC-CcchhhhhHHHHHHHHhh-----cCHHHHHHHHHHHhCCCCC
Q 012794 163 RSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV-HPESVEFFTPTAQRLIEE-----KGTDALAAALAQLSGFSRP 236 (456)
Q Consensus 163 ~~ie~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~ll~~-----~~~~~~a~ala~~~~~~~~ 236 (456)
+.|++.++..++.+.+|..+++.+.....+...+... ..+.++.|.+++++|++. .+++.+|++|+.+..-..+
T Consensus 358 ~~ie~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~a~~~~~~~~~~ 437 (629)
T PRK11634 358 RNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPTAEGEELDLETLAAALLKMAQGERP 437 (629)
T ss_pred HHHHHHhCCCcceecCCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999888888887776543 335577888888888864 6789999999988642211
Q ss_pred ------C-----C---Ccc-----------------cc--C---CCCceEEEEEeecCccccCCCChhHHHHHHHhhCCC
Q 012794 237 ------P-----S---SRS-----------------LI--N---HEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPT 280 (456)
Q Consensus 237 ------~-----~---~r~-----------------l~--~---~~~g~~t~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 280 (456)
+ . .+. .. . ...+|++++|+.|+ ++++.|++|+++|++..++
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~i~~~~~~ 514 (629)
T PRK11634 438 LILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGR---DDGVEVRHIVGAIANEGDI 514 (629)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccCCCCEEEEEeccc---ccCCCHHHHHHHHHhhcCC
Confidence 0 0 000 00 0 12269999999999 8999999999999999999
Q ss_pred CCCccccEEEeecCccceeeeecCHHHHHHHHhhcCC
Q 012794 281 AADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 317 (456)
Q Consensus 281 ~~~~ig~i~~~~~~~~~~~~~dv~~~~a~~~~~~~~~ 317 (456)
...+||+|+|+++| |+||||+++++++++....
T Consensus 515 ~~~~ig~i~i~~~~----s~v~~~~~~~~~~~~~~~~ 547 (629)
T PRK11634 515 SSRYIGNIKLFASH----STIELPKGMPGEVLQHFTR 547 (629)
T ss_pred ChhhCCcEEEeCCc----eEEEcChhhHHHHHHHhcc
Confidence 99999999999999 7999999999999987543
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-33 Score=284.92 Aligned_cols=167 Identities=43% Similarity=0.638 Sum_probs=155.0
Q ss_pred cccccCCCccccCCcccccccCeeEEEEEcCcccHHHHHHHHHHHHC--CCCcEEEEcCChHHHHHHHHHHHh-cCCEEE
Q 012794 3 NYFVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA--KGGKTIVFTQTKRDADEVSLALTS-IIASEA 79 (456)
Q Consensus 3 ~~l~~~~~i~~v~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~--~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~ 79 (456)
+||+++..|++......++..+|.|+...+++..|...|..+|..+. +..|+||||+|++.|++|+..|.. .+.+.+
T Consensus 291 ~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~ 370 (519)
T KOG0331|consen 291 DFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVA 370 (519)
T ss_pred HHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceee
Confidence 57788888888877788899999999999999999999999999884 567999999999999999999996 699999
Q ss_pred EeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhH
Q 012794 80 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 159 (456)
Q Consensus 80 lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~ 159 (456)
|||+++|.+|+.+|+.|++|+..||||||||+||||||+|++|||||+|.++++|+||+|||||+|++|++++|++..+.
T Consensus 371 iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~ 450 (519)
T KOG0331|consen 371 IHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNA 450 (519)
T ss_pred ecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHh
Q 012794 160 RTVRSLERDV 169 (456)
Q Consensus 160 ~~~~~ie~~~ 169 (456)
.....+.+.+
T Consensus 451 ~~a~~l~~~l 460 (519)
T KOG0331|consen 451 KLARELIKVL 460 (519)
T ss_pred HHHHHHHHHH
Confidence 7666665443
No 3
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.1e-31 Score=250.20 Aligned_cols=163 Identities=34% Similarity=0.599 Sum_probs=152.1
Q ss_pred CcccccccCeeEEEEEcCccc-HHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHH
Q 012794 16 NQDEKLAEGIKLYAISTTATS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTL 93 (456)
Q Consensus 16 ~~~~~~~~~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l 93 (456)
+..+++.+.|++||+.+..++ |.+.|.+|...+. -.++||||||+..++.|.+.+.. .+.+..+||+|+|++|++++
T Consensus 231 krdeltlEgIKqf~v~ve~EewKfdtLcdLYd~Lt-ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im 309 (400)
T KOG0328|consen 231 KRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLT-ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIM 309 (400)
T ss_pred ecCCCchhhhhhheeeechhhhhHhHHHHHhhhhe-hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHH
Confidence 355678889999999888765 9999999988764 47999999999999999999995 78999999999999999999
Q ss_pred hcccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCc
Q 012794 94 NGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173 (456)
Q Consensus 94 ~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~ 173 (456)
+.||.++.+|||+|||.+||||+|.|++|||||+|.+.+.|+||+||.||.|++|++|-|+...+...++.||+++...+
T Consensus 310 ~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i 389 (400)
T KOG0328|consen 310 NDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQI 389 (400)
T ss_pred HHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred eecCCC
Q 012794 174 EFVSPP 179 (456)
Q Consensus 174 ~~~~~p 179 (456)
+.++..
T Consensus 390 ~emp~n 395 (400)
T KOG0328|consen 390 DEMPMN 395 (400)
T ss_pred ccccch
Confidence 877654
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.5e-30 Score=272.89 Aligned_cols=181 Identities=38% Similarity=0.594 Sum_probs=159.6
Q ss_pred cccccCCCccccCCcccccccCeeEEEEEcCccc-HHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEE
Q 012794 3 NYFVMFSHSTQVGNQDEKLAEGIKLYAISTTATS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEAL 80 (456)
Q Consensus 3 ~~l~~~~~i~~v~~~~~~~~~~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~l 80 (456)
+|++++..|.+.......+...|+|+++.+...+ |+.+|..++.... ..++||||+|+..|+.|+..|.. ++.+..|
T Consensus 225 ~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~-~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~l 303 (513)
T COG0513 225 RYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDED-EGRVIVFVRTKRLVEELAESLRKRGFKVAAL 303 (513)
T ss_pred HHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCC-CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEe
Confidence 4566666555554455558899999999999876 9999999998764 35899999999999999999995 7999999
Q ss_pred eCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChh-hH
Q 012794 81 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QR 159 (456)
Q Consensus 81 hg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~-e~ 159 (456)
||+|+|++|.++++.|++++++|||||||++||||||+|++|||||+|.++++|+||+|||||+|++|.+++|+.+. |.
T Consensus 304 hG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~ 383 (513)
T COG0513 304 HGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEV 383 (513)
T ss_pred cCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986 89
Q ss_pred HHHHHHHHHhCCCce-ecCCCCHHHH
Q 012794 160 RTVRSLERDVGCKFE-FVSPPVVEDV 184 (456)
Q Consensus 160 ~~~~~ie~~~~~~~~-~~~~p~~~~i 184 (456)
..+..+++.+...++ ...+|..+..
T Consensus 384 ~~l~~ie~~~~~~~~~~~~~~~~~~~ 409 (513)
T COG0513 384 KKLKRIEKRLERKLPSAVLLPLDEPE 409 (513)
T ss_pred HHHHHHHHHHhccccccccCCcchhh
Confidence 999999999877755 4555554433
No 5
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.97 E-value=1.9e-29 Score=264.26 Aligned_cols=229 Identities=31% Similarity=0.456 Sum_probs=198.7
Q ss_pred ccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCC
Q 012794 22 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK 100 (456)
Q Consensus 22 ~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~ 100 (456)
...++++++.++...|.+.|..++.... ..++||||+|++.|+.|++.|.. ++.+..+||+|++.+|+.+++.|++|.
T Consensus 214 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~-~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~ 292 (460)
T PRK11776 214 LPAIEQRFYEVSPDERLPALQRLLLHHQ-PESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRS 292 (460)
T ss_pred CCCeeEEEEEeCcHHHHHHHHHHHHhcC-CCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 4558888888888889999999997653 57899999999999999999985 789999999999999999999999999
Q ss_pred eEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCceecCCCC
Q 012794 101 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV 180 (456)
Q Consensus 101 ~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~~~~p~ 180 (456)
++|||||+++++|||+|++++|||||+|.+.++|+||+|||||+|+.|.+++|+.+.+...++.+++.++..+++..+|.
T Consensus 293 ~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~l~~ 372 (460)
T PRK11776 293 CSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNWEPLPS 372 (460)
T ss_pred CcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCceecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888776664
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhcCHHHHHHHHHHHhCCCCCCCCccccCCCCceEEEEEeecCcc
Q 012794 181 VEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAF 260 (456)
Q Consensus 181 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~a~ala~~~~~~~~~~~r~l~~~~~g~~t~~~~~~~~~ 260 (456)
..... .. .....+.++.+..++
T Consensus 373 ~~~~~------------------------------------------------~~--------~~~~~~~~l~i~~~~-- 394 (460)
T PRK11776 373 LSPLS------------------------------------------------GV--------PLLPEMVTLCIDGGK-- 394 (460)
T ss_pred hhhcc------------------------------------------------cc--------cCCCCeEEEEEeccc--
Confidence 22100 00 012347788888776
Q ss_pred ccCCCChhHHHHHHHhhCCCCCCccccEEEeecCccceeeeecCHHHHHHHHhh
Q 012794 261 SRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNK 314 (456)
Q Consensus 261 ~~~~~~~~~i~~~l~~~~~~~~~~ig~i~~~~~~~~~~~~~dv~~~~a~~~~~~ 314 (456)
...+.+.++++.+.........++|.|.+.+.+ ++++++...++.++..
T Consensus 395 -~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~ 443 (460)
T PRK11776 395 -KDKLRPGDILGALTGDAGLDGAQIGKINVTDFH----AYVAVERAVAKKALKK 443 (460)
T ss_pred -ccCCCccchHHHhhcccCCChhhcCCccccccc----ceeecchhhHHHHHHH
Confidence 567788889999988887888889999998887 6999999988888855
No 6
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.9e-30 Score=251.27 Aligned_cols=163 Identities=34% Similarity=0.536 Sum_probs=152.5
Q ss_pred CcccccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHh
Q 012794 16 NQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLN 94 (456)
Q Consensus 16 ~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~ 94 (456)
.+...+.++++|+|+.++..+|...|..||+... +..+||||+|..+++.++-.|.. ++.+..|||+|+|..|.-.++
T Consensus 266 s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~-g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~ 344 (476)
T KOG0330|consen 266 SSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNELA-GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALN 344 (476)
T ss_pred cchhcchHHhhhheEeccccccchhHHHHHHhhc-CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHH
Confidence 4566777889999999999999999999998774 58999999999999999999996 899999999999999999999
Q ss_pred cccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCce
Q 012794 95 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 174 (456)
Q Consensus 95 ~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~ 174 (456)
+|+++..+|||||||++||+|+|.|++|||||+|.+..+||||+|||+|+|++|++|.+++..|.+.+.+||..++.+..
T Consensus 345 ~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~ 424 (476)
T KOG0330|consen 345 KFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLP 424 (476)
T ss_pred HHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred ecCCC
Q 012794 175 FVSPP 179 (456)
Q Consensus 175 ~~~~p 179 (456)
...++
T Consensus 425 ~~~~~ 429 (476)
T KOG0330|consen 425 EYKVD 429 (476)
T ss_pred ccCcc
Confidence 54443
No 7
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.97 E-value=8e-30 Score=253.58 Aligned_cols=228 Identities=28% Similarity=0.389 Sum_probs=183.8
Q ss_pred cCCCccccCCcccccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCC
Q 012794 7 MFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 85 (456)
Q Consensus 7 ~~~~i~~v~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~ 85 (456)
.+..|+.+......+.+.++|-|+.++...++-+|..+|+.+....++||||+|...+..+++.|.. .+.|..+||.++
T Consensus 286 d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~ 365 (543)
T KOG0342|consen 286 DPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQK 365 (543)
T ss_pred CceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCc
Confidence 5788999999999999999999999999888999999998886668999999999999999999985 688999999999
Q ss_pred HHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHH
Q 012794 86 QHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165 (456)
Q Consensus 86 ~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~i 165 (456)
|..|..+...|++.+.-|||||||+|||+|+|+|++||+||+|.++++||||+|||||.|++|.+++++.++|..+++.|
T Consensus 366 Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~L 445 (543)
T KOG0342|consen 366 QNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYL 445 (543)
T ss_pred ccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCceecCCCCH-HHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHH-----Hh--hcCHHHHHHHHHHHhCCCCCC
Q 012794 166 ERDVGCKFEFVSPPVV-EDVLESSAEQVVATLNGVHPESVEFFTPTAQRL-----IE--EKGTDALAAALAQLSGFSRPP 237 (456)
Q Consensus 166 e~~~~~~~~~~~~p~~-~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l-----l~--~~~~~~~a~ala~~~~~~~~~ 237 (456)
+ ..+++..+.|.. .+.++...+.++..-........+.|..++.-+ .. ..+.-.++ +++..+|++.+|
T Consensus 446 K---~lpl~~~e~~~~~~~~v~~~~~~li~~~y~~~~aak~ay~syl~~y~s~slk~~~~~~~l~La-~~~~s~gf~~pp 521 (543)
T KOG0342|consen 446 K---KLPLEEFEFPPLKPEDVQSQLEKLISKNYSLKEAAKEAYKSYLGAYNSHSLKDIFNVNLLELA-AVAKSFGFSVPP 521 (543)
T ss_pred h---hCCCcccCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccchhhhcccccchhhHH-HHHHHcCCCCCc
Confidence 8 445555554443 333344455555433223222333333332211 11 11223455 888999988765
Q ss_pred C
Q 012794 238 S 238 (456)
Q Consensus 238 ~ 238 (456)
.
T Consensus 522 ~ 522 (543)
T KOG0342|consen 522 A 522 (543)
T ss_pred c
Confidence 3
No 8
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.96 E-value=1.1e-29 Score=253.58 Aligned_cols=164 Identities=36% Similarity=0.542 Sum_probs=143.6
Q ss_pred cccccCCCccccCCcccccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEe
Q 012794 3 NYFVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALH 81 (456)
Q Consensus 3 ~~l~~~~~i~~v~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lh 81 (456)
.||..+.. .+++ ...+....|+|..+.+..+.|...|..+|..+ ...++|||+||++.|+.||+.|.+ ++.+..||
T Consensus 472 ~ylr~pv~-vtig-~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlH 548 (673)
T KOG0333|consen 472 SYLRRPVV-VTIG-SAGKPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADALAKILEKAGYKVTTLH 548 (673)
T ss_pred HHhhCCeE-EEec-cCCCCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHHHHHHHhhccceEEEee
Confidence 35554433 2333 44456677899999999999999999999876 457999999999999999999996 89999999
Q ss_pred CCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHH
Q 012794 82 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT 161 (456)
Q Consensus 82 g~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~ 161 (456)
|+-+|+||+.+|+.|+.+..+||||||||+||||||+|.+|||||++.++++|+||||||||||+.|++++|+++.+...
T Consensus 549 g~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v 628 (673)
T KOG0333|consen 549 GGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAV 628 (673)
T ss_pred CCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988665
Q ss_pred HHHHHHHh
Q 012794 162 VRSLERDV 169 (456)
Q Consensus 162 ~~~ie~~~ 169 (456)
+..|.+.+
T Consensus 629 ~ydLkq~l 636 (673)
T KOG0333|consen 629 FYDLKQAL 636 (673)
T ss_pred HHHHHHHH
Confidence 55554443
No 9
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=3e-28 Score=233.64 Aligned_cols=164 Identities=30% Similarity=0.542 Sum_probs=152.8
Q ss_pred cccccccCeeEEEEEcCcccHHHHHHHHHHHHCC--CCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHH
Q 012794 17 QDEKLAEGIKLYAISTTATSKRTILSDLITVYAK--GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTL 93 (456)
Q Consensus 17 ~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~--~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l 93 (456)
....+.+++.+-|+.++...|-..|..+|..+.. .+.++||++|..+|+.|+..|.. .+.+..||+.|+|.+|...+
T Consensus 218 ~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aL 297 (442)
T KOG0340|consen 218 DGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAAL 297 (442)
T ss_pred CCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHH
Confidence 4456778899999999999999999999988754 67899999999999999999986 68999999999999999999
Q ss_pred hcccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCc
Q 012794 94 NGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173 (456)
Q Consensus 94 ~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~ 173 (456)
.+|+.+.++||||||||+||+|||.|++|||||+|.++.+|+||+|||+|||+.|.++.++++.+...+..||+.++.++
T Consensus 298 srFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl 377 (442)
T KOG0340|consen 298 SRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKL 377 (442)
T ss_pred HHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred eecCCCC
Q 012794 174 EFVSPPV 180 (456)
Q Consensus 174 ~~~~~p~ 180 (456)
.....-+
T Consensus 378 ~e~~~~~ 384 (442)
T KOG0340|consen 378 TEYNKVQ 384 (442)
T ss_pred ccccccc
Confidence 7755443
No 10
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=6.8e-28 Score=232.45 Aligned_cols=166 Identities=31% Similarity=0.522 Sum_probs=149.1
Q ss_pred cccccccCeeEEEEEcCc-ccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHh
Q 012794 17 QDEKLAEGIKLYAISTTA-TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLN 94 (456)
Q Consensus 17 ~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~ 94 (456)
.++.+.++|+++|+.|+. .+|.++|.+|..... -+++||||.|++.|..|+..|.. ++.+..|||+|.-.+|..+++
T Consensus 296 ~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~t-igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~ 374 (477)
T KOG0332|consen 296 REELALDNIKQLYVLCACRDDKYQALVNLYGLLT-IGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIID 374 (477)
T ss_pred hhhccccchhhheeeccchhhHHHHHHHHHhhhh-hhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHH
Confidence 556788999999999886 579999999776553 47999999999999999999985 899999999999999999999
Q ss_pred cccCCCeEEEEeccccccccCcCccceEEecCCCC------ChhHHHHHhcccccCCCCceEEEeeCh-hhHHHHHHHHH
Q 012794 95 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN------DPETFVHRSGRTGRAGKEGTAILMFTS-SQRRTVRSLER 167 (456)
Q Consensus 95 ~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~------~~~~y~qr~GR~gR~g~~g~~i~~~~~-~e~~~~~~ie~ 167 (456)
.||.|+.+|||+|+|+|||||++.|++|||||+|. |.++|+||+|||||.|++|.+|.|+.. .....+..|++
T Consensus 375 ~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~ 454 (477)
T KOG0332|consen 375 RFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQK 454 (477)
T ss_pred HHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHH
Confidence 99999999999999999999999999999999995 799999999999999999999999875 46788889999
Q ss_pred HhCCCceecCCCCHHH
Q 012794 168 DVGCKFEFVSPPVVED 183 (456)
Q Consensus 168 ~~~~~~~~~~~p~~~~ 183 (456)
+++.++..+.+...+|
T Consensus 455 ~F~~~i~~~~~~d~~E 470 (477)
T KOG0332|consen 455 HFNMKIKRLDPDDLDE 470 (477)
T ss_pred HHhhcceecCCccHHH
Confidence 9988888777644443
No 11
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.95 E-value=3.2e-27 Score=237.22 Aligned_cols=231 Identities=24% Similarity=0.309 Sum_probs=178.6
Q ss_pred ccCCCccccCCcccccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh---cCCEEEEeC
Q 012794 6 VMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHG 82 (456)
Q Consensus 6 ~~~~~i~~v~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~---~~~~~~lhg 82 (456)
++|..|.+-......++.+++|+|+.++..+|+++|--+|..+. ..+.|||+.|++++..+++.+.+ ++.+..|||
T Consensus 269 ~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shl-k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G 347 (758)
T KOG0343|consen 269 KDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHL-KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHG 347 (758)
T ss_pred CCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhcc-ccceEEEEehhhHHHHHHHHHHhcCCCCceeeecc
Confidence 45666655555667889999999999999999999999999885 48999999999999999999874 688999999
Q ss_pred CCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhh-HHH
Q 012794 83 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRT 161 (456)
Q Consensus 83 ~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e-~~~ 161 (456)
.|+|..|..++.+|-....-||+|||+++||||+|.|+|||++|.|.++++||||+|||+|....|.+++++++.| ..+
T Consensus 348 ~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~ 427 (758)
T KOG0343|consen 348 TMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAM 427 (758)
T ss_pred chhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998 566
Q ss_pred HHHHHHHhCCCceecCCC-CHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhcCHHHH------HHHHHHHhCCC
Q 012794 162 VRSLERDVGCKFEFVSPP-VVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDAL------AAALAQLSGFS 234 (456)
Q Consensus 162 ~~~ie~~~~~~~~~~~~p-~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~------a~ala~~~~~~ 234 (456)
+..|++.. ++++.+.+. ....-+...++.++..-..+..-.-..|..++..+....++..+ +.|++..+|++
T Consensus 428 l~~Lq~k~-I~i~~i~i~~~k~~~i~~~l~~ll~~~~eLk~~aqka~isY~rsi~~~rdK~~f~~~~l~~~afa~s~Gl~ 506 (758)
T KOG0343|consen 428 LKKLQKKK-IPIKEIKIDPEKLTSIRNKLEALLAKDPELKEYAQKAFISYLRSIYLMRDKRVFDVEKLDIEAFADSLGLP 506 (758)
T ss_pred HHHHHHcC-CCHHhhccCHHHhhhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhhccchhhcchhccHHHHHHhcCCC
Confidence 66676654 555554333 11111222333333222222222234555666665554443322 66788888877
Q ss_pred CCCC
Q 012794 235 RPPS 238 (456)
Q Consensus 235 ~~~~ 238 (456)
..|+
T Consensus 507 ~~p~ 510 (758)
T KOG0343|consen 507 GTPR 510 (758)
T ss_pred CCch
Confidence 6665
No 12
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=1.4e-27 Score=232.33 Aligned_cols=163 Identities=35% Similarity=0.562 Sum_probs=149.5
Q ss_pred cccccCCCccccCCcccccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHH-hcCCEEEEe
Q 012794 3 NYFVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALH 81 (456)
Q Consensus 3 ~~l~~~~~i~~v~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~-~~~~~~~lh 81 (456)
+|++. +.+.+|+.-.-.....|+|..+....++|++++..++..+....++||||..+..|+.|...|. +++.+..||
T Consensus 418 sY~Ke-p~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lH 496 (629)
T KOG0336|consen 418 SYLKE-PMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLH 496 (629)
T ss_pred HhhhC-ceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhcc
Confidence 35544 4777888877777788999998888999999999999999888999999999999999999888 689999999
Q ss_pred CCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHH
Q 012794 82 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT 161 (456)
Q Consensus 82 g~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~ 161 (456)
|+-.|.+|+.+++.|+.|.++||||||+++||||+|+|+||+|||+|.+++.|+||+|||||+|++|++++|++-.+...
T Consensus 497 G~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~ 576 (629)
T KOG0336|consen 497 GNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSM 576 (629)
T ss_pred CChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred HHHHH
Q 012794 162 VRSLE 166 (456)
Q Consensus 162 ~~~ie 166 (456)
...|-
T Consensus 577 a~eLI 581 (629)
T KOG0336|consen 577 AEELI 581 (629)
T ss_pred HHHHH
Confidence 66553
No 13
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=7.9e-28 Score=227.73 Aligned_cols=173 Identities=25% Similarity=0.446 Sum_probs=159.7
Q ss_pred ccccccCCCccccCCcccccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEE
Q 012794 2 LNYFVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEAL 80 (456)
Q Consensus 2 ~~~l~~~~~i~~v~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~l 80 (456)
.+||++|-.|.+. ++.++..|.|||..+.+.+|+.-|..|+..+. -.++|||||+...++.||+.+.+ ++.|..+
T Consensus 277 ~~~l~kPy~INLM---~eLtl~GvtQyYafV~e~qKvhCLntLfskLq-INQsIIFCNS~~rVELLAkKITelGyscyyi 352 (459)
T KOG0326|consen 277 DRHLKKPYEINLM---EELTLKGVTQYYAFVEERQKVHCLNTLFSKLQ-INQSIIFCNSTNRVELLAKKITELGYSCYYI 352 (459)
T ss_pred HHhccCcceeehh---hhhhhcchhhheeeechhhhhhhHHHHHHHhc-ccceEEEeccchHhHHHHHHHHhccchhhHH
Confidence 4566666666654 56778899999999999999999999998774 47899999999999999999986 8999999
Q ss_pred eCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHH
Q 012794 81 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 160 (456)
Q Consensus 81 hg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~ 160 (456)
|+.|.|+.|.+++..|++|..+.|||||.+.||||+++|++|||||+|.+.++|+||+||.||.|..|.+|.+++-.++.
T Consensus 353 HakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf 432 (459)
T KOG0326|consen 353 HAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRF 432 (459)
T ss_pred HHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCceecCC
Q 012794 161 TVRSLERDVGCKFEFVSP 178 (456)
Q Consensus 161 ~~~~ie~~~~~~~~~~~~ 178 (456)
.+..||+.++..+++++.
T Consensus 433 ~L~~IE~eLGtEI~pip~ 450 (459)
T KOG0326|consen 433 NLYRIEQELGTEIKPIPS 450 (459)
T ss_pred hHHHHHHHhccccccCCC
Confidence 999999999998887654
No 14
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=1.9e-27 Score=235.34 Aligned_cols=178 Identities=30% Similarity=0.433 Sum_probs=154.4
Q ss_pred cccCCCccccCCcccccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh---cCCEEEEe
Q 012794 5 FVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALH 81 (456)
Q Consensus 5 l~~~~~i~~v~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~---~~~~~~lh 81 (456)
|.++..|.+-..+...++..+..+|+.|.+..|+..|.++|..+ ..+++|||.+|+..++..+..|.. ...+..+|
T Consensus 210 LRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iH 288 (567)
T KOG0345|consen 210 LRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIH 288 (567)
T ss_pred ccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEec
Confidence 34555555555555558889999999999999999999999875 468999999999999999988874 46789999
Q ss_pred CCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHH
Q 012794 82 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT 161 (456)
Q Consensus 82 g~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~ 161 (456)
|.|.+.+|.++++.|++..-.+|+||||+|||||||+|++||+||+|.++..|+||+|||+|+|+.|.+|+|+.+.|..+
T Consensus 289 GK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aY 368 (567)
T KOG0345|consen 289 GKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAY 368 (567)
T ss_pred chhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHH
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHhCCCceecCCCCHHH
Q 012794 162 VRSLERDVGCKFEFVSPPVVED 183 (456)
Q Consensus 162 ~~~ie~~~~~~~~~~~~p~~~~ 183 (456)
+..+.-.-....+.+..|....
T Consensus 369 veFl~i~~~v~le~~~~e~~~~ 390 (567)
T KOG0345|consen 369 VEFLRIKGKVELERIDTEKASL 390 (567)
T ss_pred HHHHHhcCccchhhhcccccch
Confidence 8877544445566666665544
No 15
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=1e-26 Score=241.20 Aligned_cols=157 Identities=35% Similarity=0.520 Sum_probs=142.9
Q ss_pred ccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccC
Q 012794 20 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ 98 (456)
Q Consensus 20 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~ 98 (456)
.....+++.++......|..+|..++... ...++||||+|+..|+.|+..|.. ++.+..+||+|++++|..+++.|++
T Consensus 225 ~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~ 303 (423)
T PRK04837 225 KTGHRIKEELFYPSNEEKMRLLQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTR 303 (423)
T ss_pred cCCCceeEEEEeCCHHHHHHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHc
Confidence 34566777777777778999999888765 357999999999999999999985 7899999999999999999999999
Q ss_pred CCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCceecC
Q 012794 99 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 177 (456)
Q Consensus 99 g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~~~ 177 (456)
|+++||||||++++|||+|+|++|||||+|.++++|+||+|||||+|+.|.+++|+.+.+...+..|++++...++...
T Consensus 304 g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~ 382 (423)
T PRK04837 304 GDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSK 382 (423)
T ss_pred CCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998887765433
No 16
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.94 E-value=3.9e-26 Score=238.81 Aligned_cols=155 Identities=37% Similarity=0.563 Sum_probs=141.3
Q ss_pred ccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccC
Q 012794 20 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ 98 (456)
Q Consensus 20 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~ 98 (456)
.....+.+++..+....|.++|..++... ...++||||+|+..|+.|++.|.. ++.+..+||+|++.+|.+++++|++
T Consensus 215 ~~~~~i~~~~~~~~~~~k~~~l~~l~~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~ 293 (456)
T PRK10590 215 TASEQVTQHVHFVDKKRKRELLSQMIGKG-NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKS 293 (456)
T ss_pred ccccceeEEEEEcCHHHHHHHHHHHHHcC-CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 34566788888888888888888887654 457999999999999999999985 7899999999999999999999999
Q ss_pred CCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCcee
Q 012794 99 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 175 (456)
Q Consensus 99 g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~ 175 (456)
|+++|||||+++++|||+|+|++||||++|.++++|+||+|||||+|..|.+++|+...+...++.+++.+...++.
T Consensus 294 g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~~ 370 (456)
T PRK10590 294 GDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPR 370 (456)
T ss_pred CCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888766543
No 17
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=7.7e-26 Score=241.77 Aligned_cols=154 Identities=36% Similarity=0.530 Sum_probs=140.2
Q ss_pred ccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccC
Q 012794 20 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ 98 (456)
Q Consensus 20 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~ 98 (456)
.....+.++++.+...+|+.+|..++... ...++||||+|+..|+.|++.|.+ ++.+..|||+|++.+|+++++.|++
T Consensus 227 ~~~~~i~q~~~~~~~~~k~~~L~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~ 305 (572)
T PRK04537 227 ITAARVRQRIYFPADEEKQTLLLGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK 305 (572)
T ss_pred ccccceeEEEEecCHHHHHHHHHHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHc
Confidence 44566788888777788888888888654 467999999999999999999985 7899999999999999999999999
Q ss_pred CCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCce
Q 012794 99 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 174 (456)
Q Consensus 99 g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~ 174 (456)
++++||||||++++|||+|+|++|||||+|.++++|+||+|||||.|+.|.+++|+.+.+...+..|++++..+++
T Consensus 306 G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~ 381 (572)
T PRK04537 306 GQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIP 381 (572)
T ss_pred CCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999998889999888776554
No 18
>PTZ00110 helicase; Provisional
Probab=99.93 E-value=8.3e-26 Score=240.55 Aligned_cols=151 Identities=35% Similarity=0.566 Sum_probs=136.6
Q ss_pred ccccCeeEEEEEcCcccHHHHHHHHHHHHC-CCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhccc
Q 012794 20 KLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFR 97 (456)
Q Consensus 20 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~-~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr 97 (456)
....++++.+..+....|...|..++.... ...++||||+|++.|+.|+..|.. ++.+..+||+|++.+|+.+++.|+
T Consensus 345 ~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~ 424 (545)
T PTZ00110 345 TACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFK 424 (545)
T ss_pred ccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHh
Confidence 345678888877777889888988887764 567999999999999999999984 789999999999999999999999
Q ss_pred CCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhC
Q 012794 98 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 170 (456)
Q Consensus 98 ~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~ 170 (456)
+++++||||||++++|||+|+|++|||||+|.++++|+||+|||||+|+.|.+++|+++.+...+..|.+.+.
T Consensus 425 ~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~ 497 (545)
T PTZ00110 425 TGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLR 497 (545)
T ss_pred cCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988777777665544
No 19
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.93 E-value=5.9e-25 Score=228.74 Aligned_cols=154 Identities=31% Similarity=0.529 Sum_probs=138.8
Q ss_pred ccccCeeEEEEEcCc-ccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhccc
Q 012794 20 KLAEGIKLYAISTTA-TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFR 97 (456)
Q Consensus 20 ~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr 97 (456)
.....+.++++.+.. .+|.++|..++... ...++||||+|++.|+.|+..|.. ++.+..+||+|++.+|..+++.|+
T Consensus 214 ~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~ 292 (434)
T PRK11192 214 RERKKIHQWYYRADDLEHKTALLCHLLKQP-EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLT 292 (434)
T ss_pred ccccCceEEEEEeCCHHHHHHHHHHHHhcC-CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHh
Confidence 344567787776654 67899998888643 357999999999999999999985 789999999999999999999999
Q ss_pred CCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCce
Q 012794 98 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 174 (456)
Q Consensus 98 ~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~ 174 (456)
+|+++||||||++++|||+|+|++|||||+|.+.+.|+||+|||||+|..|.+++++...+...+..+++++...+.
T Consensus 293 ~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~ 369 (434)
T PRK11192 293 DGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLK 369 (434)
T ss_pred CCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988765543
No 20
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=2.2e-25 Score=224.97 Aligned_cols=147 Identities=44% Similarity=0.691 Sum_probs=131.7
Q ss_pred cccccCeeEEEEEcCcccHHHHHHHHHHHHC---CCC-----cEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHH
Q 012794 19 EKLAEGIKLYAISTTATSKRTILSDLITVYA---KGG-----KTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQR 89 (456)
Q Consensus 19 ~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~---~~~-----~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R 89 (456)
-.++.+|.|..+.+...+|...|.++|.... ... +++|||+|++.|++|+..|.. .+.+..+||+.+|.+|
T Consensus 297 g~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er 376 (482)
T KOG0335|consen 297 GSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIER 376 (482)
T ss_pred ccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHH
Confidence 3456788898888999899888888887543 233 899999999999999999985 8999999999999999
Q ss_pred HHHHhcccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHH
Q 012794 90 ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165 (456)
Q Consensus 90 ~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~i 165 (456)
+++++.|+++++.|||||+|++||||+|+|+||||||+|.+..+|+||||||||+|+.|.++.|+........+.|
T Consensus 377 ~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L 452 (482)
T KOG0335|consen 377 EQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKAL 452 (482)
T ss_pred HHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999986555444444
No 21
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.92 E-value=1.5e-24 Score=228.14 Aligned_cols=154 Identities=34% Similarity=0.586 Sum_probs=140.6
Q ss_pred ccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccC
Q 012794 20 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ 98 (456)
Q Consensus 20 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~ 98 (456)
....+++++.+.+...+|..+|..++... ...++||||+++++|+.+++.|.+ ++.+..+||+|++.+|.++++.|++
T Consensus 305 ~~~~~~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~ 383 (475)
T PRK01297 305 VASDTVEQHVYAVAGSDKYKLLYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFRE 383 (475)
T ss_pred CCCCcccEEEEEecchhHHHHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhC
Confidence 34456777777777778988888888654 357999999999999999999985 7889999999999999999999999
Q ss_pred CCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCce
Q 012794 99 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 174 (456)
Q Consensus 99 g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~ 174 (456)
|+++|||||+++++|||+|++++||+|++|.++.+|+||+||+||.|+.|.+++|+...+...+..+++.++.+++
T Consensus 384 G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 384 GKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKIS 459 (475)
T ss_pred CCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987764
No 22
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.92 E-value=6.3e-26 Score=227.90 Aligned_cols=184 Identities=32% Similarity=0.456 Sum_probs=159.0
Q ss_pred ccCCCccccCCcccccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCC
Q 012794 6 VMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 84 (456)
Q Consensus 6 ~~~~~i~~v~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~ 84 (456)
.++..||+... ..++.++..-.+.|+..+|--.|..+|..| ++++|||||+.+.+..|+-.|.. .+....||+.|
T Consensus 422 ~kpkiiD~t~q--~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry--PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M 497 (731)
T KOG0347|consen 422 GKPKIIDLTPQ--SATASTLTESLIECPPLEKDLYLYYFLTRY--PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASM 497 (731)
T ss_pred CCCeeEecCcc--hhHHHHHHHHhhcCCccccceeEEEEEeec--CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHH
Confidence 35667777643 345666777777787777777777777666 48999999999999999999986 68889999999
Q ss_pred CHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHH
Q 012794 85 SQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 164 (456)
Q Consensus 85 ~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ 164 (456)
.|.+|.+.|++|++..--|||||||||||||||.|+|||||.+|.+.+.|+||+|||+||+..|+.++|+.|.+...+.+
T Consensus 498 ~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~K 577 (731)
T KOG0347|consen 498 IQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKK 577 (731)
T ss_pred HHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCceecCCCCHHHHHHHHHHHHH
Q 012794 165 LERDVGCKFEFVSPPVVEDVLESSAEQVV 193 (456)
Q Consensus 165 ie~~~~~~~~~~~~p~~~~i~~~~~~~~~ 193 (456)
|.+-+....+.-..|..+.++....+++.
T Consensus 578 L~ktL~k~~dlpifPv~~~~m~~lkeRvr 606 (731)
T KOG0347|consen 578 LCKTLKKKEDLPIFPVETDIMDALKERVR 606 (731)
T ss_pred HHHHHhhccCCCceeccHHHHHHHHHHHH
Confidence 98888877766557777777766665553
No 23
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.92 E-value=3.4e-24 Score=227.31 Aligned_cols=151 Identities=27% Similarity=0.453 Sum_probs=134.0
Q ss_pred ccccCeeEEEEEcCcccHHHHHHHHHHHHC-CCCcEEEEcCChHHHHHHHHHHHh--cCCEEEEeCCCCHHHHHHHHhcc
Q 012794 20 KLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGF 96 (456)
Q Consensus 20 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~-~~~~~IIF~~t~~~a~~l~~~L~~--~~~~~~lhg~~~~~~R~~~l~~F 96 (456)
.....++++.+.+....|...|.+++.... ...++||||+|+..|+.|+..|.. ++.+..+||+|++.+|..+++.|
T Consensus 335 ~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~F 414 (518)
T PLN00206 335 RPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSF 414 (518)
T ss_pred CCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHH
Confidence 344567888888888788888888876543 235899999999999999999973 68899999999999999999999
Q ss_pred cCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhC
Q 012794 97 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 170 (456)
Q Consensus 97 r~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~ 170 (456)
++|+++|||||+++++|||+|+|++|||||+|.++++|+||+|||||+|..|.+++|+++.+...+..+.+.+.
T Consensus 415 r~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~ 488 (518)
T PLN00206 415 LVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLK 488 (518)
T ss_pred HCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988777777766554
No 24
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.6e-24 Score=210.73 Aligned_cols=170 Identities=31% Similarity=0.556 Sum_probs=154.1
Q ss_pred cccCCCccccCCcccccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCC
Q 012794 5 FVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGD 83 (456)
Q Consensus 5 l~~~~~i~~v~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~ 83 (456)
|+..+...++..+. ++.+.|+|+|+.+...+|++.|.++.+ .-.+++|||||++.++.|...|.. .+.+.++|++
T Consensus 221 f~~~pv~i~vkk~~-ltl~gikq~~i~v~k~~k~~~l~dl~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d 296 (397)
T KOG0327|consen 221 FMREPVRILVKKDE-LTLEGIKQFYINVEKEEKLDTLCDLYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGD 296 (397)
T ss_pred hccCceEEEecchh-hhhhheeeeeeeccccccccHHHHHHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecc
Confidence 34334444444333 778999999999999999999999988 347899999999999999999975 7899999999
Q ss_pred CCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHH
Q 012794 84 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 163 (456)
Q Consensus 84 ~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~ 163 (456)
|.|.+|..++..|+.|..+|||+|+.++||||+..+.+||||++|...+.|+||+||+||.|++|.++.+++..+...++
T Consensus 297 ~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk 376 (397)
T KOG0327|consen 297 MEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLK 376 (397)
T ss_pred cchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCceecCC
Q 012794 164 SLERDVGCKFEFVSP 178 (456)
Q Consensus 164 ~ie~~~~~~~~~~~~ 178 (456)
.+|+++...++.++.
T Consensus 377 ~ie~~y~~~i~e~p~ 391 (397)
T KOG0327|consen 377 DIEKFYNTPIEELPS 391 (397)
T ss_pred hHHHhcCCcceeccc
Confidence 999999998887654
No 25
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=2.7e-24 Score=214.57 Aligned_cols=151 Identities=33% Similarity=0.571 Sum_probs=134.6
Q ss_pred cccccccCeeEEEEEcCc---ccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHH-hcCCEEEEeCCCCHHHHHHH
Q 012794 17 QDEKLAEGIKLYAISTTA---TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERT 92 (456)
Q Consensus 17 ~~~~~~~~i~~~~~~~~~---~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~-~~~~~~~lhg~~~~~~R~~~ 92 (456)
+...++..+.|.|+.+.+ ..+..+|..|+.... ..++|||+.|++.|..+.-.|- -++.+..|||.|+|.||...
T Consensus 390 ~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRles 468 (691)
T KOG0338|consen 390 PNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLES 468 (691)
T ss_pred CccccchhhhHHHheeccccccccHHHHHHHHHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHH
Confidence 445566667777776543 357788888887653 6899999999999999988776 37899999999999999999
Q ss_pred HhcccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHH
Q 012794 93 LNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 168 (456)
Q Consensus 93 l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~ 168 (456)
+++|++.+++||||||+|+|||||+.|..||||..|.+++.|+||+|||+|+|+.|.+++|+...++..++.|-+.
T Consensus 469 L~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 469 LEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred HHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988666
No 26
>PTZ00424 helicase 45; Provisional
Probab=99.91 E-value=1.3e-23 Score=216.39 Aligned_cols=159 Identities=31% Similarity=0.570 Sum_probs=141.2
Q ss_pred ccccCeeEEEEEcCc-ccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhccc
Q 012794 20 KLAEGIKLYAISTTA-TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFR 97 (456)
Q Consensus 20 ~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr 97 (456)
.....++++++.+.. ..+...+..++... ...++||||+|++.++.+++.|.. .+.+..+||+|++.+|..+++.|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~ 314 (401)
T PTZ00424 236 LTLEGIRQFYVAVEKEEWKFDTLCDLYETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFR 314 (401)
T ss_pred cccCCceEEEEecChHHHHHHHHHHHHHhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 345667788777664 45677777776654 357899999999999999999985 689999999999999999999999
Q ss_pred CCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCceecC
Q 012794 98 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 177 (456)
Q Consensus 98 ~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~~~ 177 (456)
+|+++|||||+++++|||+|++++||+|++|.+..+|+||+||+||.|+.|.|++|+++.+...+..+++.+...++..+
T Consensus 315 ~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~ 394 (401)
T PTZ00424 315 SGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMP 394 (401)
T ss_pred cCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988777654
Q ss_pred CC
Q 012794 178 PP 179 (456)
Q Consensus 178 ~p 179 (456)
+.
T Consensus 395 ~~ 396 (401)
T PTZ00424 395 ME 396 (401)
T ss_pred cc
Confidence 43
No 27
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.91 E-value=2.8e-23 Score=227.72 Aligned_cols=168 Identities=21% Similarity=0.314 Sum_probs=139.2
Q ss_pred cHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh---------cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEe
Q 012794 36 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS---------IIASEALHGDISQHQRERTLNGFRQGKFTVLVA 106 (456)
Q Consensus 36 ~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~---------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVa 106 (456)
.+..+|..++. .+.++||||+|++.|+.|+..|.. ...+..+||+|++++|.+++++|++|++++|||
T Consensus 259 ~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVa 335 (742)
T TIGR03817 259 EAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVAT 335 (742)
T ss_pred HHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEE
Confidence 35555666554 357999999999999999998764 246789999999999999999999999999999
Q ss_pred ccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeC--hhhHHHHHHHHHHhCCCceec-CCCCHHH
Q 012794 107 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT--SSQRRTVRSLERDVGCKFEFV-SPPVVED 183 (456)
Q Consensus 107 Tdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~--~~e~~~~~~ie~~~~~~~~~~-~~p~~~~ 183 (456)
||++++|||||++++||||++|.++++|+||+|||||+|+.|.+++++. +.+...+..+++.+..+++.. ..|....
T Consensus 336 Td~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~~~~~~n~~ 415 (742)
T TIGR03817 336 TNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEATVFDPDNPY 415 (742)
T ss_pred CchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCccceeCCCcHH
Confidence 9999999999999999999999999999999999999999999999986 567778888888888887664 4577777
Q ss_pred HHHHHHHHHHHHHhcCCcchhhhh
Q 012794 184 VLESSAEQVVATLNGVHPESVEFF 207 (456)
Q Consensus 184 i~~~~~~~~~~~l~~~~~~~~~~~ 207 (456)
++..++..+..++ .+..+..+.|
T Consensus 416 il~~hl~~aa~e~-~l~~~~~~~~ 438 (742)
T TIGR03817 416 VLGPHLCCAAAEL-PLTEADLELF 438 (742)
T ss_pred HHHHHHHHHHhcC-CCChHHHHhh
Confidence 7777666665444 3333334444
No 28
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=2.2e-23 Score=209.10 Aligned_cols=152 Identities=28% Similarity=0.437 Sum_probs=135.2
Q ss_pred cccccCeeEEEEEcCcccHHHHHHHHHHHH---CCCCcEEEEcCChHHHHHHHHHHHhc---------------------
Q 012794 19 EKLAEGIKLYAISTTATSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI--------------------- 74 (456)
Q Consensus 19 ~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~---~~~~~~IIF~~t~~~a~~l~~~L~~~--------------------- 74 (456)
-.+++++.+.|..+|+.-++..|..+|... .+..++|||..|.+.++.-+..|...
T Consensus 390 ~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~ 469 (708)
T KOG0348|consen 390 FAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLF 469 (708)
T ss_pred ccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhh
Confidence 346778889999999998888888877643 33568999999999999988877531
Q ss_pred --CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEE
Q 012794 75 --IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 152 (456)
Q Consensus 75 --~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~ 152 (456)
.++.-|||.|+|++|..+++.|+...-.||+||||++||||+|+|.+||+||+|.++++|+||+|||+|+|.+|.+++
T Consensus 470 ~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alL 549 (708)
T KOG0348|consen 470 MDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALL 549 (708)
T ss_pred hcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEE
Confidence 247789999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred eeChhhHHHHHHHHHHhC
Q 012794 153 MFTSSQRRTVRSLERDVG 170 (456)
Q Consensus 153 ~~~~~e~~~~~~ie~~~~ 170 (456)
|+.|.|.+++..++....
T Consensus 550 fL~P~Eaey~~~l~~~~~ 567 (708)
T KOG0348|consen 550 FLLPSEAEYVNYLKKHHI 567 (708)
T ss_pred EecccHHHHHHHHHhhcc
Confidence 999999999988877643
No 29
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.89 E-value=3e-22 Score=210.28 Aligned_cols=132 Identities=27% Similarity=0.462 Sum_probs=118.4
Q ss_pred cHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecccccccc
Q 012794 36 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 114 (456)
Q Consensus 36 ~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gi 114 (456)
..++.|..++....++..+||||+|+++|+.++..|.. ++.+..+|++|++++|+.+++.|++++++|||||+++++||
T Consensus 211 ~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GI 290 (470)
T TIGR00614 211 KILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGI 290 (470)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccC
Confidence 34444555555344556779999999999999999985 78999999999999999999999999999999999999999
Q ss_pred CcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHH
Q 012794 115 DIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 167 (456)
Q Consensus 115 dip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~ 167 (456)
|+|+|++||||++|.+++.|+||+|||||.|..+.|++|+.+.+...++.+..
T Consensus 291 D~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 291 NKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred CcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998887777643
No 30
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.89 E-value=1e-22 Score=200.30 Aligned_cols=169 Identities=22% Similarity=0.400 Sum_probs=148.2
Q ss_pred ccccccCCCccccCCcccccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEE
Q 012794 2 LNYFVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEAL 80 (456)
Q Consensus 2 ~~~l~~~~~i~~v~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~l 80 (456)
.+++...+.|-.+.+.+-..++++.||++.|...+|+.+|..|++...-.+++|||+||.+.+..|.-.|.. +++..+|
T Consensus 219 KkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciL 298 (569)
T KOG0346|consen 219 KKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCIL 298 (569)
T ss_pred HHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhh
Confidence 345554555555555555678999999999999999999999998765679999999999999999998886 7999999
Q ss_pred eCCCCHHHHHHHHhcccCCCeEEEEeccc-----------------------------------cccccCcCccceEEec
Q 012794 81 HGDISQHQRERTLNGFRQGKFTVLVATDV-----------------------------------AARGLDIPNVDLIIHY 125 (456)
Q Consensus 81 hg~~~~~~R~~~l~~Fr~g~~~vLVaTdv-----------------------------------~~~Gidip~v~~VI~~ 125 (456)
.|.||..-|..++++|..|.++||||||. ++||||+.+|..||||
T Consensus 299 NseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNF 378 (569)
T KOG0346|consen 299 NSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNF 378 (569)
T ss_pred cccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeec
Confidence 99999999999999999999999999981 3499999999999999
Q ss_pred CCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhC
Q 012794 126 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 170 (456)
Q Consensus 126 ~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~ 170 (456)
|+|.++.+||||+|||+|++++|+++.|+.+.+..-...||..+.
T Consensus 379 D~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~ 423 (569)
T KOG0346|consen 379 DFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESILK 423 (569)
T ss_pred CCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHHh
Confidence 999999999999999999999999999999998876666665554
No 31
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.89 E-value=4e-22 Score=219.29 Aligned_cols=130 Identities=21% Similarity=0.368 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCc
Q 012794 38 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 116 (456)
Q Consensus 38 ~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidi 116 (456)
+..|..++.......++||||+|+..|+.|+..|.. ++.+.++||+|++++|+.++++|++++++|||||+++++|||+
T Consensus 667 le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDk 746 (1195)
T PLN03137 667 LEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINK 746 (1195)
T ss_pred HHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCc
Confidence 345555555443456899999999999999999985 8999999999999999999999999999999999999999999
Q ss_pred CccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHH
Q 012794 117 PNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 167 (456)
Q Consensus 117 p~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~ 167 (456)
|+|++||||++|.+++.|+||+|||||.|..+.|++||...+...++.+..
T Consensus 747 PDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 747 PDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred cCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999888776666643
No 32
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.88 E-value=3.3e-23 Score=200.74 Aligned_cols=124 Identities=35% Similarity=0.627 Sum_probs=112.8
Q ss_pred cCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHH-hcCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecccc
Q 012794 32 TTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 110 (456)
Q Consensus 32 ~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~ 110 (456)
+..+.|+..|.+.|... ..++||||..+..++.+.++|- ++..++++||+-.|++|...++.|+.|+-+|||||||+
T Consensus 404 VkqEaKiVylLeCLQKT--~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVA 481 (610)
T KOG0341|consen 404 VKQEAKIVYLLECLQKT--SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVA 481 (610)
T ss_pred HHhhhhhhhHHHHhccC--CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecch
Confidence 45556666666655543 4689999999999999999987 78999999999999999999999999999999999999
Q ss_pred ccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChh
Q 012794 111 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS 157 (456)
Q Consensus 111 ~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~ 157 (456)
+.|+|+|++.||||||+|.+++.|+||+|||||.|++|.+.+|+...
T Consensus 482 SKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~ 528 (610)
T KOG0341|consen 482 SKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKN 528 (610)
T ss_pred hccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeeccc
Confidence 99999999999999999999999999999999999999999998765
No 33
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=2.4e-22 Score=204.56 Aligned_cols=152 Identities=32% Similarity=0.534 Sum_probs=135.3
Q ss_pred cccccccCeeEEEEEcC-cccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHH--hcCCEEEEeCCCCHHHHHHHH
Q 012794 17 QDEKLAEGIKLYAISTT-ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT--SIIASEALHGDISQHQRERTL 93 (456)
Q Consensus 17 ~~~~~~~~i~~~~~~~~-~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~--~~~~~~~lhg~~~~~~R~~~l 93 (456)
..+.+..+|+|..+.+- ...|+.++..++..- -..++|||+.+.+.|.+|...|. ..+.+.++||+.++.+|+.++
T Consensus 353 ~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g-~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~ 431 (593)
T KOG0344|consen 353 LRNSANETVDQELVFCGSEKGKLLALRQLVASG-FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETM 431 (593)
T ss_pred cchhHhhhhhhhheeeecchhHHHHHHHHHhcc-CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHH
Confidence 33445667777766654 457888888888765 35799999999999999999994 578999999999999999999
Q ss_pred hcccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHh
Q 012794 94 NGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 169 (456)
Q Consensus 94 ~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~ 169 (456)
++||.|++.|||||++++||||+.+|++|||||+|.+.-+|+||+||+||+|+.|.+|+||+..+...++.++...
T Consensus 432 ~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~ 507 (593)
T KOG0344|consen 432 ERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVM 507 (593)
T ss_pred HHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988888876654
No 34
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.87 E-value=1.8e-21 Score=210.02 Aligned_cols=130 Identities=22% Similarity=0.460 Sum_probs=117.3
Q ss_pred cHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecccccccc
Q 012794 36 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 114 (456)
Q Consensus 36 ~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gi 114 (456)
.++..|..++... .+.++||||+|+++|+.++..|.. ++.+..+|++|++++|.++++.|++++++|||||+++++||
T Consensus 222 ~~~~~l~~~l~~~-~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GI 300 (607)
T PRK11057 222 KPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGI 300 (607)
T ss_pred chHHHHHHHHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccC
Confidence 3445555555443 467999999999999999999985 78999999999999999999999999999999999999999
Q ss_pred CcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHH
Q 012794 115 DIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 166 (456)
Q Consensus 115 dip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie 166 (456)
|+|+|++||||++|.++++|+||+|||||.|..+.|++|+.+.+...++.+.
T Consensus 301 Dip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 301 NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred CCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998877776654
No 35
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.87 E-value=5.2e-21 Score=211.75 Aligned_cols=164 Identities=17% Similarity=0.234 Sum_probs=144.1
Q ss_pred ccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHH-h-cCCEEEEeCCCCHHHHHHHHhcccCC--CeEEEEecccc
Q 012794 35 TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-S-IIASEALHGDISQHQRERTLNGFRQG--KFTVLVATDVA 110 (456)
Q Consensus 35 ~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~-~-~~~~~~lhg~~~~~~R~~~l~~Fr~g--~~~vLVaTdv~ 110 (456)
..|++.|.++++... ..|+||||+++.+++.|++.|. . ++.+..+||+|++.+|+++++.|+++ ..+|||||+++
T Consensus 478 d~Ki~~L~~~L~~~~-~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvg 556 (956)
T PRK04914 478 DPRVEWLIDFLKSHR-SEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIG 556 (956)
T ss_pred CHHHHHHHHHHHhcC-CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhh
Confidence 458888888887663 6899999999999999999995 3 78999999999999999999999984 69999999999
Q ss_pred ccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCC--CceecCCCCHHHHHHHH
Q 012794 111 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC--KFEFVSPPVVEDVLESS 188 (456)
Q Consensus 111 ~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~--~~~~~~~p~~~~i~~~~ 188 (456)
++|+|++.+++|||||+|++++.|+||+||++|.|+++.+.+++...+......|.+.+.. .+-...+|+..++.+..
T Consensus 557 seGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~~v~~~~ 636 (956)
T PRK04914 557 SEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGRALYDEF 636 (956)
T ss_pred ccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999988888776666667777776654 66778999999999988
Q ss_pred HHHHHHHHhcC
Q 012794 189 AEQVVATLNGV 199 (456)
Q Consensus 189 ~~~~~~~l~~~ 199 (456)
...+...+..-
T Consensus 637 ~~~l~~~l~~~ 647 (956)
T PRK04914 637 GDELIPYLASP 647 (956)
T ss_pred HHHHHHHHhCC
Confidence 88888777544
No 36
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=1.8e-21 Score=194.17 Aligned_cols=151 Identities=28% Similarity=0.500 Sum_probs=136.1
Q ss_pred ccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHH-h----cCCEEEEeCCCCHHHHHHHHh
Q 012794 20 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-S----IIASEALHGDISQHQRERTLN 94 (456)
Q Consensus 20 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~-~----~~~~~~lhg~~~~~~R~~~l~ 94 (456)
.++..+.|+++.+....|.-.+..+|... +..++|+|+++.+.+..++..|. . .+.+..+.|.+++..|.+.++
T Consensus 399 slp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~ 477 (620)
T KOG0350|consen 399 SLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLE 477 (620)
T ss_pred ecChhhhhceeecccccchHhHHHHHHHh-hcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHH
Confidence 45667889999888888988899999876 45899999999999999999987 2 356777899999999999999
Q ss_pred cccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCC
Q 012794 95 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 171 (456)
Q Consensus 95 ~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~ 171 (456)
+|..|.++||||||+++||||+-+|+.|||||+|.+..+|+||+|||+|||+.|.|+++....+...+.++-+..+.
T Consensus 478 ~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 478 KFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred HHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999988877777666654
No 37
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=9.7e-22 Score=196.15 Aligned_cols=149 Identities=34% Similarity=0.535 Sum_probs=132.4
Q ss_pred cccccccCeeEEEEEcCcc-cHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHH-hcCCEEEEeCCCCHHHHHHHHh
Q 012794 17 QDEKLAEGIKLYAISTTAT-SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLN 94 (456)
Q Consensus 17 ~~~~~~~~i~~~~~~~~~~-~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~ 94 (456)
+.....+.|.|....++.. .|+..|..-|......+++|||+.-+..+++|+..|. +.+.+..|||+|.|++|.++|.
T Consensus 433 ~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls 512 (731)
T KOG0339|consen 433 EVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLS 512 (731)
T ss_pred ehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHH
Confidence 4555667788887777664 6788777766666667899999999999999999998 6899999999999999999999
Q ss_pred cccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHH
Q 012794 95 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165 (456)
Q Consensus 95 ~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~i 165 (456)
+|+++...||||||+++||+|||++..|||||+-.|++.|+||+|||||+|.+|++++|+++.+..+.-.|
T Consensus 513 ~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~L 583 (731)
T KOG0339|consen 513 KFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHL 583 (731)
T ss_pred HHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999886544433
No 38
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.86 E-value=3.9e-21 Score=206.83 Aligned_cols=153 Identities=33% Similarity=0.548 Sum_probs=141.8
Q ss_pred cccccccCeeEEEEEcC-cccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHh
Q 012794 17 QDEKLAEGIKLYAISTT-ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLN 94 (456)
Q Consensus 17 ~~~~~~~~i~~~~~~~~-~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~ 94 (456)
........|++....++ ...|+.-|..||..+....++||||...+.|+.+.+.|.+ ++.|..|||+.+|.+|..+++
T Consensus 578 ~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~ 657 (997)
T KOG0334|consen 578 GRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIE 657 (997)
T ss_pred cceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHH
Confidence 44456677888888888 7789999999998887789999999999999999999986 788889999999999999999
Q ss_pred cccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHh
Q 012794 95 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 169 (456)
Q Consensus 95 ~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~ 169 (456)
.|+++.+++||||+++++|||+.++.+|||||+|...+.|+||+|||||+|++|.|++|+.+.+..+.-.|.+.+
T Consensus 658 dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 658 DFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred HHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998888888888877
No 39
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.86 E-value=5.6e-21 Score=209.98 Aligned_cols=191 Identities=19% Similarity=0.293 Sum_probs=141.2
Q ss_pred CeeEEEEEcCcccHH-----HHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh----cCCEEEEeCCCCHHHHHHHHh
Q 012794 24 GIKLYAISTTATSKR-----TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLN 94 (456)
Q Consensus 24 ~i~~~~~~~~~~~k~-----~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~ 94 (456)
.|+++|+.+...+++ .+|..++.. ..+++||||+++.+++.+++.|.+ .+.+..|||+|++++|.++++
T Consensus 179 pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~ 256 (819)
T TIGR01970 179 PVEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIK 256 (819)
T ss_pred eeeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHh
Confidence 578888876655443 223333322 357899999999999999999985 477899999999999999999
Q ss_pred cccCCCeEEEEeccccccccCcCccceEEecCCCC------------------ChhHHHHHhcccccCCCCceEEEeeCh
Q 012794 95 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN------------------DPETFVHRSGRTGRAGKEGTAILMFTS 156 (456)
Q Consensus 95 ~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~------------------~~~~y~qr~GR~gR~g~~g~~i~~~~~ 156 (456)
.|++|+.+||||||++++|||||+|++|||+++|. +..+|+||+|||||. ++|.||.+++.
T Consensus 257 ~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~ 335 (819)
T TIGR01970 257 PDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSE 335 (819)
T ss_pred hcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCH
Confidence 99999999999999999999999999999999885 234699999999999 79999999998
Q ss_pred hhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhcCHHHHHHHHHHHhCCCCC
Q 012794 157 SQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRP 236 (456)
Q Consensus 157 ~e~~~~~~ie~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~a~ala~~~~~~~~ 236 (456)
.+... +..+. ..||+...+..++..+..........| .+++.+..+++.+|+..|..+...
T Consensus 336 ~~~~~---l~~~~-----------~PEI~r~~L~~~~L~l~~~g~~~~~~~-----~~l~~P~~~~i~~a~~~L~~lgal 396 (819)
T TIGR01970 336 EQHQR---LPAQD-----------EPEILQADLSGLALELAQWGAKDPSDL-----RWLDAPPSVALAAARQLLQRLGAL 396 (819)
T ss_pred HHHHh---hhcCC-----------CcceeccCcHHHHHHHHHcCCCChhhC-----CCCCCcCHHHHHHHHHHHHHCCCC
Confidence 76433 22221 223333444445544544332222222 356677778888888877655444
No 40
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.85 E-value=2.1e-21 Score=198.39 Aligned_cols=155 Identities=26% Similarity=0.420 Sum_probs=137.0
Q ss_pred CccccccCCCccccCCcccccccCeeEEEEEcCcc--------cHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHH
Q 012794 1 MLNYFVMFSHSTQVGNQDEKLAEGIKLYAISTTAT--------SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT 72 (456)
Q Consensus 1 i~~~l~~~~~i~~v~~~~~~~~~~i~~~~~~~~~~--------~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~ 72 (456)
|.+|+-++..|.+..+. .....|+||++.++.. .|++.|..+++.+ +..++||||+....|+-++..|.
T Consensus 217 Lsk~mrdp~lVr~n~~d--~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ 293 (980)
T KOG4284|consen 217 LSKFMRDPALVRFNADD--VQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSI-PYVQALVFCDQISRAEPIATHLK 293 (980)
T ss_pred HHHHhcccceeecccCC--ceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhh
Confidence 35677788888777443 4566889998876553 3788888888766 46899999999999999999999
Q ss_pred -hcCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEE
Q 012794 73 -SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAI 151 (456)
Q Consensus 73 -~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i 151 (456)
.++.|.++.|.|+|.+|..+++.+|+-..+|||+||+.+||||-++|++|||.|.|.|.++|.|||||+||.|..|.++
T Consensus 294 ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aV 373 (980)
T KOG4284|consen 294 SSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAV 373 (980)
T ss_pred ccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeE
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeChhh
Q 012794 152 LMFTSSQ 158 (456)
Q Consensus 152 ~~~~~~e 158 (456)
+|+...+
T Consensus 374 T~~~~~~ 380 (980)
T KOG4284|consen 374 TLLEDER 380 (980)
T ss_pred EEeccch
Confidence 9987554
No 41
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.85 E-value=1.9e-20 Score=201.41 Aligned_cols=200 Identities=16% Similarity=0.205 Sum_probs=139.1
Q ss_pred cccccCCCccccCCcccccccCeeEEEEEcCc----------ccHHHHHHHHHHHH-CCCCcEEEEcCChHHHHHHHHHH
Q 012794 3 NYFVMFSHSTQVGNQDEKLAEGIKLYAISTTA----------TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLAL 71 (456)
Q Consensus 3 ~~l~~~~~i~~v~~~~~~~~~~i~~~~~~~~~----------~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~a~~l~~~L 71 (456)
+||.++..|... ..+...|+++|+.... ..+..++..+.... ...+++||||+++.+++.+++.|
T Consensus 340 ~~~~~p~~I~I~----grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L 415 (675)
T PHA02653 340 EFFPNPAFVHIP----GGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYL 415 (675)
T ss_pred HHhcCCcEEEeC----CCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHH
Confidence 455555444432 2344678888875431 22333333333222 23468999999999999999999
Q ss_pred Hh---cCCEEEEeCCCCHHHHHHHHhcc-cCCCeEEEEeccccccccCcCccceEEecC---CCC---------ChhHHH
Q 012794 72 TS---IIASEALHGDISQHQRERTLNGF-RQGKFTVLVATDVAARGLDIPNVDLIIHYE---LPN---------DPETFV 135 (456)
Q Consensus 72 ~~---~~~~~~lhg~~~~~~R~~~l~~F-r~g~~~vLVaTdv~~~Gidip~v~~VI~~~---~p~---------~~~~y~ 135 (456)
.+ .+.+.+|||+|++. ++++++| ++++.+||||||+|++|||||+|++||+++ .|. +.++|+
T Consensus 416 ~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~ 493 (675)
T PHA02653 416 EKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRT 493 (675)
T ss_pred HhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHH
Confidence 85 47899999999985 5677777 789999999999999999999999999999 665 888999
Q ss_pred HHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHH
Q 012794 136 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLI 215 (456)
Q Consensus 136 qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll 215 (456)
||+|||||. ++|.|+.|+++.+...+.+ +..+.+..++..++.......+. .++
T Consensus 494 QRaGRAGR~-~~G~c~rLyt~~~~~pI~r-------------------i~~~~L~~~vL~lk~~g~~~~~~------~~l 547 (675)
T PHA02653 494 QRKGRVGRV-SPGTYVYFYDLDLLKPIKR-------------------IDSEFLHNYILYAKYFNLTLPED------LFV 547 (675)
T ss_pred HhccCcCCC-CCCeEEEEECHHHhHHHHH-------------------HhHHHHHHHHHHHHHcCCCCccc------ccC
Confidence 999999999 7999999999876422211 11122344444444333222221 156
Q ss_pred hhcCHHHHHHHHHHHhCCC
Q 012794 216 EEKGTDALAAALAQLSGFS 234 (456)
Q Consensus 216 ~~~~~~~~a~ala~~~~~~ 234 (456)
+.++++++.+|+..|..+.
T Consensus 548 dpP~~~~l~~A~~~L~~lg 566 (675)
T PHA02653 548 IPSNLDRLRKTEEYIDSFN 566 (675)
T ss_pred CCCCHHHHHHHHHHHHHcC
Confidence 7777788877777775443
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.85 E-value=1.4e-20 Score=202.96 Aligned_cols=133 Identities=27% Similarity=0.510 Sum_probs=120.7
Q ss_pred CcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccc
Q 012794 33 TATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111 (456)
Q Consensus 33 ~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~ 111 (456)
....+...|.+++.... +.++||||+|++.|+.+++.|.. ++.+..+|++|++++|+.+++.|+++.++|||||++++
T Consensus 207 ~~~~~~~~l~~~l~~~~-~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~ 285 (591)
T TIGR01389 207 KKNNKQKFLLDYLKKHR-GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFG 285 (591)
T ss_pred eCCCHHHHHHHHHHhcC-CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhh
Confidence 34456777777776543 57899999999999999999985 78999999999999999999999999999999999999
Q ss_pred cccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHH
Q 012794 112 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 166 (456)
Q Consensus 112 ~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie 166 (456)
+|||+|+|++||+|++|.+++.|+|++||+||.|..+.|++++.+.+...++.+.
T Consensus 286 ~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 286 MGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred ccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998887776654
No 43
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.85 E-value=1.1e-20 Score=207.98 Aligned_cols=192 Identities=18% Similarity=0.264 Sum_probs=146.6
Q ss_pred CeeEEEEEcCcccHHH-----HHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh----cCCEEEEeCCCCHHHHHHHHh
Q 012794 24 GIKLYAISTTATSKRT-----ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLN 94 (456)
Q Consensus 24 ~i~~~~~~~~~~~k~~-----~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~ 94 (456)
.|+++|+.++...++. +|..++.. ..+.+||||+++.+++.+++.|.+ .+.+..|||+|++++|.++++
T Consensus 182 pV~~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~ 259 (812)
T PRK11664 182 PVERRYQPLPAHQRFDEAVARATAELLRQ--ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAIL 259 (812)
T ss_pred cceEEeccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhc
Confidence 5788888776655543 23333322 358999999999999999999985 467889999999999999999
Q ss_pred cccCCCeEEEEeccccccccCcCccceEEecCCCC------------------ChhHHHHHhcccccCCCCceEEEeeCh
Q 012794 95 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN------------------DPETFVHRSGRTGRAGKEGTAILMFTS 156 (456)
Q Consensus 95 ~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~------------------~~~~y~qr~GR~gR~g~~g~~i~~~~~ 156 (456)
.|++|+.+||||||++++|||||+|++|||++++. +.++|+||+|||||. .+|.||.++++
T Consensus 260 ~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~ 338 (812)
T PRK11664 260 PAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSK 338 (812)
T ss_pred cccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCH
Confidence 99999999999999999999999999999988774 346899999999999 69999999998
Q ss_pred hhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhcCHHHHHHHHHHHhCCCCC
Q 012794 157 SQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRP 236 (456)
Q Consensus 157 ~e~~~~~~ie~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~a~ala~~~~~~~~ 236 (456)
.+... + ..-+..||+...+..++..+..........| .+++.+.+.++.+|+..|..+...
T Consensus 339 ~~~~~---l-----------~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~-----~~ld~P~~~~~~~A~~~L~~lgal 399 (812)
T PRK11664 339 EQAER---A-----------AAQSEPEILHSDLSGLLLELLQWGCHDPAQL-----SWLDQPPAAALAAAKRLLQQLGAL 399 (812)
T ss_pred HHHhh---C-----------ccCCCCceeccchHHHHHHHHHcCCCCHHhC-----CCCCCCCHHHHHHHHHHHHHCCCC
Confidence 76432 1 1122335666666666666655433222222 467778888888888888655444
Q ss_pred C
Q 012794 237 P 237 (456)
Q Consensus 237 ~ 237 (456)
.
T Consensus 400 d 400 (812)
T PRK11664 400 D 400 (812)
T ss_pred C
Confidence 3
No 44
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=3.6e-19 Score=189.24 Aligned_cols=133 Identities=21% Similarity=0.239 Sum_probs=112.9
Q ss_pred eeEEEEEcCcccHHHHHHHHHHHH-CCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeE
Q 012794 25 IKLYAISTTATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFT 102 (456)
Q Consensus 25 i~~~~~~~~~~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~ 102 (456)
..+.++.++..+|...|.+++... ..+.++||||+|++.++.|+..|.+ ++.+.+|||++. +|+..+..|+.+...
T Consensus 446 ~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~ 523 (656)
T PRK12898 446 HLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGR 523 (656)
T ss_pred ecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCc
Confidence 445566677778999999988764 3457899999999999999999985 899999999865 455555555555567
Q ss_pred EEEeccccccccCcC---ccc-----eEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhH
Q 012794 103 VLVATDVAARGLDIP---NVD-----LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 159 (456)
Q Consensus 103 vLVaTdv~~~Gidip---~v~-----~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~ 159 (456)
|+||||+++||+||+ +|. +||+|++|.+...|+||+|||||+|.+|.+++|++..|.
T Consensus 524 VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 524 ITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred EEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHH
Confidence 999999999999999 676 999999999999999999999999999999999997653
No 45
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.80 E-value=1.3e-18 Score=194.47 Aligned_cols=142 Identities=23% Similarity=0.340 Sum_probs=111.5
Q ss_pred HCCCCcEEEEcCChHHHHHHHHHHHhc-------CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccc
Q 012794 48 YAKGGKTIVFTQTKRDADEVSLALTSI-------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 120 (456)
Q Consensus 48 ~~~~~~~IIF~~t~~~a~~l~~~L~~~-------~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~ 120 (456)
...+.++||||||+..|+.++..|.+. ..+.++||+|++++|..++++|++|.++|||||+++++|||+|+++
T Consensus 281 i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd 360 (876)
T PRK13767 281 IKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYID 360 (876)
T ss_pred HhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCc
Confidence 345689999999999999999999752 4689999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCChhHHHHHhcccccC-CCCceEEEeeChh-h-HHHHHHHHHHhCCCceecCCCC-HHHHHHHHH
Q 012794 121 LIIHYELPNDPETFVHRSGRTGRA-GKEGTAILMFTSS-Q-RRTVRSLERDVGCKFEFVSPPV-VEDVLESSA 189 (456)
Q Consensus 121 ~VI~~~~p~~~~~y~qr~GR~gR~-g~~g~~i~~~~~~-e-~~~~~~ie~~~~~~~~~~~~p~-~~~i~~~~~ 189 (456)
+||+++.|.++.+|+||+||+||. +.....+++.... + ......++......++.+.+|. ..+++..++
T Consensus 361 ~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i 433 (876)
T PRK13767 361 LVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIPKNPLDVLAQHI 433 (876)
T ss_pred EEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHH
Confidence 999999999999999999999986 4434444444322 2 2233344455555666665554 345544333
No 46
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.80 E-value=9.4e-19 Score=199.86 Aligned_cols=150 Identities=25% Similarity=0.408 Sum_probs=116.6
Q ss_pred HHHHHHCCCCcEEEEcCChHHHHHHHHHHHhcC----------------------------------CEEEEeCCCCHHH
Q 012794 43 DLITVYAKGGKTIVFTQTKRDADEVSLALTSII----------------------------------ASEALHGDISQHQ 88 (456)
Q Consensus 43 ~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~~----------------------------------~~~~lhg~~~~~~ 88 (456)
.++..+..+.++||||||+..|+.++..|.+.+ .+.++||+|++++
T Consensus 236 ~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkee 315 (1490)
T PRK09751 236 GILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQ 315 (1490)
T ss_pred HHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHH
Confidence 445444456899999999999999999887421 1568999999999
Q ss_pred HHHHHhcccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccC-CCCceEEEeeChhhHHHHH---H
Q 012794 89 RERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA-GKEGTAILMFTSSQRRTVR---S 164 (456)
Q Consensus 89 R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~-g~~g~~i~~~~~~e~~~~~---~ 164 (456)
|..+++.|++|++++||||+.+++||||++|++|||++.|.++.+|+||+||+||. +....++++... ....++ .
T Consensus 316 R~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~-r~dlle~~~~ 394 (1490)
T PRK09751 316 RAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRT-RRDLVDSAVI 394 (1490)
T ss_pred HHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCc-HHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999996 333445543332 222222 4
Q ss_pred HHHHhCCCceecCCCCHH-HHHHHHHHHHH
Q 012794 165 LERDVGCKFEFVSPPVVE-DVLESSAEQVV 193 (456)
Q Consensus 165 ie~~~~~~~~~~~~p~~~-~i~~~~~~~~~ 193 (456)
++.++...++.+.+|... +++..++-.++
T Consensus 395 ve~~l~g~iE~~~~p~nplDVLaqqiva~a 424 (1490)
T PRK09751 395 VECMFAGRLENLTPPHNPLDVLAQQTVAAA 424 (1490)
T ss_pred HHHHhcCCCCccCCCCChHHHHHHHHHHHH
Confidence 677788888887666544 56554444333
No 47
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=2.2e-18 Score=186.92 Aligned_cols=126 Identities=21% Similarity=0.282 Sum_probs=113.3
Q ss_pred cCcccHHHHHHHHHHH-HCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccc
Q 012794 32 TTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 109 (456)
Q Consensus 32 ~~~~~k~~~L~~ll~~-~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv 109 (456)
+...+|..+|..++.. +....++||||+|++.++.|+..|.+ ++.+.+||+++.+.++..+..+++.+ +|+||||+
T Consensus 408 ~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdm 485 (790)
T PRK09200 408 VTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNM 485 (790)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccc
Confidence 4556788888887754 35678999999999999999999995 89999999999999998888888866 79999999
Q ss_pred cccccCc---Cccc-----eEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhH
Q 012794 110 AARGLDI---PNVD-----LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 159 (456)
Q Consensus 110 ~~~Gidi---p~v~-----~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~ 159 (456)
|+||+|| |.|. +||++++|.+...|+||+|||||+|.+|.+++|++..+.
T Consensus 486 AgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 486 AGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred hhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 9999999 7998 999999999999999999999999999999999987553
No 48
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=1.2e-19 Score=178.11 Aligned_cols=163 Identities=32% Similarity=0.439 Sum_probs=151.2
Q ss_pred cccccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhc
Q 012794 17 QDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNG 95 (456)
Q Consensus 17 ~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~ 95 (456)
-+.++.+.+++.++.+...+|..+|..++.....+.++||||.|+.+|+.+...|.. ++.+..+++.|.+..|..-+.+
T Consensus 227 vetkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~ 306 (529)
T KOG0337|consen 227 VETKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRD 306 (529)
T ss_pred hhhhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhcccc
Confidence 345778888999999999999999999998776678999999999999999999985 8899999999999999999999
Q ss_pred ccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCcee
Q 012794 96 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 175 (456)
Q Consensus 96 Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~ 175 (456)
|+.++..+||.||+++||+|||-.+.|||||+|.+...|+||+||+.|+|++|.+|.++.+.+..++-.|...++.++..
T Consensus 307 F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~ 386 (529)
T KOG0337|consen 307 FRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIF 386 (529)
T ss_pred ccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred cCCC
Q 012794 176 VSPP 179 (456)
Q Consensus 176 ~~~p 179 (456)
...+
T Consensus 387 ~~~~ 390 (529)
T KOG0337|consen 387 AISH 390 (529)
T ss_pred ccch
Confidence 5444
No 49
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.79 E-value=2.1e-18 Score=180.41 Aligned_cols=119 Identities=31% Similarity=0.552 Sum_probs=112.9
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEecCCC
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP 128 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p 128 (456)
..+..||||.|++.|+.+|+.|.. ++.+..+|++|+.++|+.+.++|..++++|+|||.+..+|||-|+|.+||||++|
T Consensus 229 ~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP 308 (590)
T COG0514 229 LSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLP 308 (590)
T ss_pred cCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCC
Confidence 456789999999999999999995 7999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHH
Q 012794 129 NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 168 (456)
Q Consensus 129 ~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~ 168 (456)
.++++|+|-+||+||.|....|++|+.+.+..+.+.+.+.
T Consensus 309 ~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 309 GSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred CCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 9999999999999999999999999999998887777554
No 50
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.79 E-value=1.2e-18 Score=195.94 Aligned_cols=190 Identities=17% Similarity=0.312 Sum_probs=141.0
Q ss_pred CeeEEEEEcCccc---HHHHHHHHH---HHH--CCCCcEEEEcCChHHHHHHHHHHHh-cC---CEEEEeCCCCHHHHHH
Q 012794 24 GIKLYAISTTATS---KRTILSDLI---TVY--AKGGKTIVFTQTKRDADEVSLALTS-II---ASEALHGDISQHQRER 91 (456)
Q Consensus 24 ~i~~~~~~~~~~~---k~~~L~~ll---~~~--~~~~~~IIF~~t~~~a~~l~~~L~~-~~---~~~~lhg~~~~~~R~~ 91 (456)
.|+++|..+.... +.+.+..++ ..+ ...+++||||+++.+++.+++.|.+ .+ .+.+|||+|++++|.+
T Consensus 251 pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~ 330 (1294)
T PRK11131 251 PVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNR 330 (1294)
T ss_pred cceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHH
Confidence 4677777654321 233333333 222 3457899999999999999999985 33 3778999999999999
Q ss_pred HHhcccCCCeEEEEeccccccccCcCccceEEecC---------------CC---CChhHHHHHhcccccCCCCceEEEe
Q 012794 92 TLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE---------------LP---NDPETFVHRSGRTGRAGKEGTAILM 153 (456)
Q Consensus 92 ~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~---------------~p---~~~~~y~qr~GR~gR~g~~g~~i~~ 153 (456)
+++. .+..+||||||++++|||||+|++|||++ +| .+.++|+||+|||||. .+|.||.+
T Consensus 331 Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rL 407 (1294)
T PRK11131 331 VFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRL 407 (1294)
T ss_pred Hhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEe
Confidence 9987 46789999999999999999999999986 33 4568999999999999 69999999
Q ss_pred eChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhcCHHHHHHHHHHHhCC
Q 012794 154 FTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGF 233 (456)
Q Consensus 154 ~~~~e~~~~~~ie~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~a~ala~~~~~ 233 (456)
|++.+... +.. -+..||+...+..++..++.+....+..| .+++.++++++..++..|..+
T Consensus 408 yte~d~~~---~~~-----------~~~PEIlR~~L~~viL~lk~lgl~di~~F-----~fldpP~~~~i~~al~~L~~L 468 (1294)
T PRK11131 408 YSEDDFLS---RPE-----------FTDPEILRTNLASVILQMTALGLGDIAAF-----PFVEAPDKRNIQDGVRLLEEL 468 (1294)
T ss_pred CCHHHHHh---hhc-----------ccCCccccCCHHHHHHHHHHcCCCCccee-----eCCCCCCHHHHHHHHHHHHHC
Confidence 99866432 211 13345666667777777766554444444 367778888898888887654
Q ss_pred CC
Q 012794 234 SR 235 (456)
Q Consensus 234 ~~ 235 (456)
..
T Consensus 469 gA 470 (1294)
T PRK11131 469 GA 470 (1294)
T ss_pred CC
Confidence 43
No 51
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.78 E-value=3.8e-18 Score=146.83 Aligned_cols=128 Identities=47% Similarity=0.776 Sum_probs=114.3
Q ss_pred eeEEEEEcCcccHHHHHHHHHHHHC-CCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeE
Q 012794 25 IKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFT 102 (456)
Q Consensus 25 i~~~~~~~~~~~k~~~L~~ll~~~~-~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~ 102 (456)
|++++...+. .|...+..++.... ...++||||+++..++.+++.|.+ ...+..+|++++..+|..+++.|+++...
T Consensus 2 i~~~~~~~~~-~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 80 (131)
T cd00079 2 IKQYVLPVED-EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIV 80 (131)
T ss_pred cEEEEEECCH-HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 4566665543 78888888887653 467999999999999999999985 67899999999999999999999999999
Q ss_pred EEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEe
Q 012794 103 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 153 (456)
Q Consensus 103 vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~ 153 (456)
|||+|.++++|+|+|.+++||.+++|++...|+|++||++|.|+.+.++++
T Consensus 81 ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 81 VLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred EEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999999999999988887764
No 52
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.77 E-value=1.7e-17 Score=179.99 Aligned_cols=141 Identities=27% Similarity=0.381 Sum_probs=120.4
Q ss_pred HHHHHHHHHH-HHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecccccccc
Q 012794 37 KRTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 114 (456)
Q Consensus 37 k~~~L~~ll~-~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gi 114 (456)
+++.|...|. ....+.++||||+|+..++.|++.|.. ++.+..+|+++++.+|..+++.|+.|++.|||||+++++|+
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGf 510 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCc
Confidence 4444444443 345567999999999999999999985 78999999999999999999999999999999999999999
Q ss_pred CcCccceEEecCC-----CCChhHHHHHhcccccCCCCceEEEeeCh---------hhHHHHHHHHHHhCCCceecCC
Q 012794 115 DIPNVDLIIHYEL-----PNDPETFVHRSGRTGRAGKEGTAILMFTS---------SQRRTVRSLERDVGCKFEFVSP 178 (456)
Q Consensus 115 dip~v~~VI~~~~-----p~~~~~y~qr~GR~gR~g~~g~~i~~~~~---------~e~~~~~~ie~~~~~~~~~~~~ 178 (456)
|+|++++||++|. |.+.++|+||+|||||. ..|.+++|+.. .+...++.++..++.+...++.
T Consensus 511 dlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 587 (652)
T PRK05298 511 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPK 587 (652)
T ss_pred cccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCCh
Confidence 9999999998874 78999999999999996 78999999983 5667777888777766655443
No 53
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.77 E-value=3.7e-18 Score=171.84 Aligned_cols=122 Identities=33% Similarity=0.553 Sum_probs=107.7
Q ss_pred ccHHHHHHHHHHHHC---CCCcEEEEcCChHHHHHHHHHHHh-cCCEE-EEe--------CCCCHHHHHHHHhcccCCCe
Q 012794 35 TSKRTILSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS-IIASE-ALH--------GDISQHQRERTLNGFRQGKF 101 (456)
Q Consensus 35 ~~k~~~L~~ll~~~~---~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~-~lh--------g~~~~~~R~~~l~~Fr~g~~ 101 (456)
..|++.|.++++... .+.++|||++.+++|+.|+..|.+ +..+. .+- .+|+|.++.+++++|++|.+
T Consensus 347 HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~ 426 (542)
T COG1111 347 HPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEY 426 (542)
T ss_pred CccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCc
Confidence 368888888887652 357999999999999999999986 44442 222 36999999999999999999
Q ss_pred EEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChh
Q 012794 102 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS 157 (456)
Q Consensus 102 ~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~ 157 (456)
+|||||+|+++|||||++++||.|++-.|.-.++||.|||||. +.|.++++++..
T Consensus 427 nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 427 NVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred eEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 9999999999999999999999999999999999999999998 789999998866
No 54
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.76 E-value=7.3e-18 Score=187.44 Aligned_cols=113 Identities=24% Similarity=0.426 Sum_probs=103.4
Q ss_pred HHHHHCCCCcEEEEcCChHHHHHHHHHHHh---cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccc
Q 012794 44 LITVYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 120 (456)
Q Consensus 44 ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~ 120 (456)
++.....+++++|||++++.++.+++.|.+ .+.+..+||+|++.+|++++++|++|+++|||||+++++|||+|+++
T Consensus 653 i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~ 732 (926)
T TIGR00580 653 IRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNAN 732 (926)
T ss_pred HHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCC
Confidence 344445678999999999999999999986 46799999999999999999999999999999999999999999999
Q ss_pred eEEecCCCC-ChhHHHHHhcccccCCCCceEEEeeCh
Q 012794 121 LIIHYELPN-DPETFVHRSGRTGRAGKEGTAILMFTS 156 (456)
Q Consensus 121 ~VI~~~~p~-~~~~y~qr~GR~gR~g~~g~~i~~~~~ 156 (456)
+||+++.|. +..+|+||+||+||.++.|.|++++.+
T Consensus 733 ~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~ 769 (926)
T TIGR00580 733 TIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPH 769 (926)
T ss_pred EEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECC
Confidence 999999875 688999999999999999999999864
No 55
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.75 E-value=3.9e-17 Score=175.82 Aligned_cols=127 Identities=21% Similarity=0.259 Sum_probs=111.9
Q ss_pred EEcCcccHHHHHHHHHHH-HCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEec
Q 012794 30 ISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 107 (456)
Q Consensus 30 ~~~~~~~k~~~L~~ll~~-~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaT 107 (456)
+.+...+|..++...+.. +....++||||+|++.++.|+..|.+ ++.+.+||+++.+.++..+.++++.+ .|+|||
T Consensus 402 i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIAT 479 (762)
T TIGR03714 402 IYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVAT 479 (762)
T ss_pred EEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEc
Confidence 344556788877776654 45678999999999999999999985 89999999999999998888888877 699999
Q ss_pred cccccccCcC---------ccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhH
Q 012794 108 DVAARGLDIP---------NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 159 (456)
Q Consensus 108 dv~~~Gidip---------~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~ 159 (456)
|+|+||+||+ .+.+|+++++|..... +||+|||||+|.+|.+++|++..+.
T Consensus 480 dmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 480 SMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred cccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 9999999999 9999999999998777 9999999999999999999987653
No 56
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.75 E-value=1.2e-17 Score=188.51 Aligned_cols=191 Identities=15% Similarity=0.256 Sum_probs=139.7
Q ss_pred CeeEEEEEcCc------ccHHHHHHHHHHHH--CCCCcEEEEcCChHHHHHHHHHHHh-c---CCEEEEeCCCCHHHHHH
Q 012794 24 GIKLYAISTTA------TSKRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-I---IASEALHGDISQHQRER 91 (456)
Q Consensus 24 ~i~~~~~~~~~------~~k~~~L~~ll~~~--~~~~~~IIF~~t~~~a~~l~~~L~~-~---~~~~~lhg~~~~~~R~~ 91 (456)
.|+.+|..... .++.+.+..++..+ ...+.+|||++++.+++.+++.|.+ . +.+..|||+|++++|.+
T Consensus 244 PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~ 323 (1283)
T TIGR01967 244 PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQR 323 (1283)
T ss_pred cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHH
Confidence 45566654432 12444444444332 2357999999999999999999984 2 45889999999999999
Q ss_pred HHhcccCCCeEEEEeccccccccCcCccceEEecCCC------------------CChhHHHHHhcccccCCCCceEEEe
Q 012794 92 TLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP------------------NDPETFVHRSGRTGRAGKEGTAILM 153 (456)
Q Consensus 92 ~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p------------------~~~~~y~qr~GR~gR~g~~g~~i~~ 153 (456)
+++.+. ..+||||||++++|||||+|.+||+++++ .+.++|+||+|||||.+ +|.||.+
T Consensus 324 vf~~~~--~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRL 400 (1283)
T TIGR01967 324 VFQPHS--GRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRL 400 (1283)
T ss_pred HhCCCC--CceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEe
Confidence 987653 46899999999999999999999999853 36689999999999997 9999999
Q ss_pred eChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhcCHHHHHHHHHHHhCC
Q 012794 154 FTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGF 233 (456)
Q Consensus 154 ~~~~e~~~~~~ie~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~a~ala~~~~~ 233 (456)
|+..+...+ .. -+..||+...+..++..+.......+..| .+++.+..+++..++..|..+
T Consensus 401 yte~~~~~~---~~-----------~~~PEIlR~~L~~viL~l~~lg~~di~~f-----~fldpP~~~~i~~A~~~L~~L 461 (1283)
T TIGR01967 401 YSEEDFNSR---PE-----------FTDPEILRTNLASVILQMLALRLGDIAAF-----PFIEAPDPRAIRDGFRLLEEL 461 (1283)
T ss_pred cCHHHHHhh---hh-----------ccCcccccccHHHHHHHHHhcCCCCcccc-----cCCCCCCHHHHHHHHHHHHHC
Confidence 998764322 11 12335666667777777665443333333 467778888888888888655
Q ss_pred CCC
Q 012794 234 SRP 236 (456)
Q Consensus 234 ~~~ 236 (456)
...
T Consensus 462 GAl 464 (1283)
T TIGR01967 462 GAL 464 (1283)
T ss_pred CCC
Confidence 443
No 57
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.74 E-value=1.5e-17 Score=179.52 Aligned_cols=132 Identities=24% Similarity=0.387 Sum_probs=114.3
Q ss_pred cHHHHHHHHHH-HHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccc
Q 012794 36 SKRTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113 (456)
Q Consensus 36 ~k~~~L~~ll~-~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~G 113 (456)
.+++.|..-|. ....+.++||||+|++.++.|++.|.+ ++.+..+|++|++.+|.++++.|++|++.|||||+++++|
T Consensus 426 ~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rG 505 (655)
T TIGR00631 426 GQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREG 505 (655)
T ss_pred chHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCC
Confidence 34444444443 445678999999999999999999985 7899999999999999999999999999999999999999
Q ss_pred cCcCccceEEecC-----CCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHH
Q 012794 114 LDIPNVDLIIHYE-----LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 168 (456)
Q Consensus 114 idip~v~~VI~~~-----~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~ 168 (456)
+|+|++++||++| .|.+..+|+||+|||||. ..|.+++|+...+..+.+.|++.
T Consensus 506 fDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 506 LDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred eeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 9999999999988 899999999999999998 68999999987665555555443
No 58
>PRK02362 ski2-like helicase; Provisional
Probab=99.74 E-value=2.2e-17 Score=182.46 Aligned_cols=130 Identities=27% Similarity=0.453 Sum_probs=106.3
Q ss_pred HHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHhc-------------------------------------CCEEEEeC
Q 012794 40 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-------------------------------------IASEALHG 82 (456)
Q Consensus 40 ~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~-------------------------------------~~~~~lhg 82 (456)
.+..++..+..++++||||+|+..|+.+|..|... ..+.++|+
T Consensus 232 ~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHa 311 (737)
T PRK02362 232 TLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHA 311 (737)
T ss_pred HHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecC
Confidence 33444444446789999999999999998877531 25789999
Q ss_pred CCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEe----cC-----CCCChhHHHHHhcccccCCCC--ceEE
Q 012794 83 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE-----LPNDPETFVHRSGRTGRAGKE--GTAI 151 (456)
Q Consensus 83 ~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~----~~-----~p~~~~~y~qr~GR~gR~g~~--g~~i 151 (456)
+|++.+|+.+++.|++|.++|||||+++++|+|+|.+.+||+ || .|.++.+|+||+|||||.|.. |.++
T Consensus 312 gl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~i 391 (737)
T PRK02362 312 GLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAV 391 (737)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEE
Confidence 999999999999999999999999999999999999999997 66 689999999999999999854 8999
Q ss_pred EeeChhhHHHHHHHHHHhC
Q 012794 152 LMFTSSQRRTVRSLERDVG 170 (456)
Q Consensus 152 ~~~~~~e~~~~~~ie~~~~ 170 (456)
+++...+. ..+.+++++.
T Consensus 392 i~~~~~~~-~~~~~~~~l~ 409 (737)
T PRK02362 392 LLAKSYDE-LDELFERYIW 409 (737)
T ss_pred EEecCchh-HHHHHHHHHh
Confidence 99876431 2233444553
No 59
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.73 E-value=6.2e-17 Score=173.35 Aligned_cols=125 Identities=26% Similarity=0.286 Sum_probs=112.0
Q ss_pred CcccHHHHHHH-HHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecccc
Q 012794 33 TATSKRTILSD-LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 110 (456)
Q Consensus 33 ~~~~k~~~L~~-ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~ 110 (456)
...+|..++.+ +...+..+.++||||+|++.++.|+..|.+ ++.+.+||++ +.+|+..+.+|+.+...|+||||+|
T Consensus 386 t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmA 463 (745)
T TIGR00963 386 TEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMA 463 (745)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccc
Confidence 34467666654 555567788999999999999999999995 8999999999 8999999999999999999999999
Q ss_pred ccccCcCc-------cceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhH
Q 012794 111 ARGLDIPN-------VDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 159 (456)
Q Consensus 111 ~~Gidip~-------v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~ 159 (456)
+||+||+. ..|||+++.|.+...|.|++|||||+|.+|.+..|++..+.
T Consensus 464 gRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 464 GRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred cCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 99999998 55999999999999999999999999999999999987653
No 60
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.73 E-value=2.5e-17 Score=167.10 Aligned_cols=119 Identities=25% Similarity=0.374 Sum_probs=101.2
Q ss_pred ccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cC--CEEEEeCCCCHHHHHH----HHhcccCCCeEEEEec
Q 012794 35 TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-II--ASEALHGDISQHQRER----TLNGFRQGKFTVLVAT 107 (456)
Q Consensus 35 ~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~--~~~~lhg~~~~~~R~~----~l~~Fr~g~~~vLVaT 107 (456)
..+...+..++.....+.++||||+|++.|+.+++.|.+ .. .+..+||+|++.+|.+ +++.|++++..|||||
T Consensus 206 ~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT 285 (358)
T TIGR01587 206 VGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVAT 285 (358)
T ss_pred ccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 356777788887666678999999999999999999985 33 4899999999999976 4899999999999999
Q ss_pred cccccccCcCccceEEecCCCCChhHHHHHhcccccCCCC----ceEEEeeCh
Q 012794 108 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE----GTAILMFTS 156 (456)
Q Consensus 108 dv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~----g~~i~~~~~ 156 (456)
+++++|||++ +++||++..| +++|+||+||+||.|+. +.++++...
T Consensus 286 ~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~ 335 (358)
T TIGR01587 286 QVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIA 335 (358)
T ss_pred cchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeec
Confidence 9999999996 8899998776 78999999999998854 356666554
No 61
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.73 E-value=4.7e-17 Score=177.73 Aligned_cols=129 Identities=22% Similarity=0.410 Sum_probs=105.8
Q ss_pred eeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCCh--------HHHHHHHHHHHhc---CCEEEEeCCCCHHHHHHHH
Q 012794 25 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTK--------RDADEVSLALTSI---IASEALHGDISQHQRERTL 93 (456)
Q Consensus 25 i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~--------~~a~~l~~~L~~~---~~~~~lhg~~~~~~R~~~l 93 (456)
++.+++.. ..+..++..+......+.+++|||++. ..++.+++.|.+. +.+..+||+|++.+|++++
T Consensus 447 i~~~~~~~--~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~ 524 (681)
T PRK10917 447 ITTVVIPD--SRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVM 524 (681)
T ss_pred cEEEEeCc--ccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHH
Confidence 44444332 233334444444455678999999964 4566777777753 5799999999999999999
Q ss_pred hcccCCCeEEEEeccccccccCcCccceEEecCCCC-ChhHHHHHhcccccCCCCceEEEeeC
Q 012794 94 NGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN-DPETFVHRSGRTGRAGKEGTAILMFT 155 (456)
Q Consensus 94 ~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~-~~~~y~qr~GR~gR~g~~g~~i~~~~ 155 (456)
++|++|+++|||||+++++|||+|++++||+++.|. ....|+||+||+||.|..|.|++++.
T Consensus 525 ~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 525 AAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred HHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 999999999999999999999999999999999997 57889999999999999999999995
No 62
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.73 E-value=1.1e-17 Score=164.53 Aligned_cols=106 Identities=38% Similarity=0.642 Sum_probs=100.2
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEecC
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE 126 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~ 126 (456)
-.++||||.|+..|+.|.+.+.+ .+.|++|||+..+.+|.+.++.|++..++.||||||++|||||..+.++||.-
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invt 584 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVT 584 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEe
Confidence 46899999999999999999873 38999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHhcccccCCCCceEEEeeCh
Q 012794 127 LPNDPETFVHRSGRTGRAGKEGTAILMFTS 156 (456)
Q Consensus 127 ~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~ 156 (456)
+|.+...|+||+||+||+-+-|.+|.++..
T Consensus 585 lpd~k~nyvhrigrvgraermglaislvat 614 (725)
T KOG0349|consen 585 LPDDKTNYVHRIGRVGRAERMGLAISLVAT 614 (725)
T ss_pred cCcccchhhhhhhccchhhhcceeEEEeec
Confidence 999999999999999999999999988753
No 63
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.73 E-value=5.8e-17 Score=175.80 Aligned_cols=120 Identities=23% Similarity=0.404 Sum_probs=103.0
Q ss_pred cHHHHHHHHHHHHCCCCcEEEEcCCh--------HHHHHHHHHHHh---cCCEEEEeCCCCHHHHHHHHhcccCCCeEEE
Q 012794 36 SKRTILSDLITVYAKGGKTIVFTQTK--------RDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVL 104 (456)
Q Consensus 36 ~k~~~L~~ll~~~~~~~~~IIF~~t~--------~~a~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vL 104 (456)
.+..++..+.+....+.+++|||++. ..++.+++.|.+ .+.+..+||+|++++|++++++|++|+++||
T Consensus 433 ~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~IL 512 (630)
T TIGR00643 433 EKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDIL 512 (630)
T ss_pred hHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEE
Confidence 34444555555555678999999976 456677777764 4679999999999999999999999999999
Q ss_pred EeccccccccCcCccceEEecCCCC-ChhHHHHHhcccccCCCCceEEEeeC
Q 012794 105 VATDVAARGLDIPNVDLIIHYELPN-DPETFVHRSGRTGRAGKEGTAILMFT 155 (456)
Q Consensus 105 VaTdv~~~Gidip~v~~VI~~~~p~-~~~~y~qr~GR~gR~g~~g~~i~~~~ 155 (456)
|||+++++|||+|++++||+++.|. ....|+||+||+||.|++|.|++++.
T Consensus 513 VaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 513 VATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred EECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 9999999999999999999999986 68889999999999999999999983
No 64
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.72 E-value=5.8e-17 Score=183.89 Aligned_cols=127 Identities=20% Similarity=0.355 Sum_probs=106.1
Q ss_pred HHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh---cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCc
Q 012794 42 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 118 (456)
Q Consensus 42 ~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~ 118 (456)
..++..+..+++++||||+++.++.+++.|.+ .+.+.++||+|++.+|++++.+|++|+++|||||+++++|||+|+
T Consensus 800 ~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~ 879 (1147)
T PRK10689 800 EAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 (1147)
T ss_pred HHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhccccccc
Confidence 33444444568999999999999999999985 367999999999999999999999999999999999999999999
Q ss_pred cceEEecCCC-CChhHHHHHhcccccCCCCceEEEeeChh------hHHHHHHHHHH
Q 012794 119 VDLIIHYELP-NDPETFVHRSGRTGRAGKEGTAILMFTSS------QRRTVRSLERD 168 (456)
Q Consensus 119 v~~VI~~~~p-~~~~~y~qr~GR~gR~g~~g~~i~~~~~~------e~~~~~~ie~~ 168 (456)
+++||..+.. .+...|+||+|||||.++.|.|++++... ....++.|++.
T Consensus 880 v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~ 936 (1147)
T PRK10689 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASL 936 (1147)
T ss_pred CCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHh
Confidence 9999954432 35668999999999999999999998542 34455555554
No 65
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.70 E-value=1.1e-16 Score=174.02 Aligned_cols=129 Identities=23% Similarity=0.336 Sum_probs=99.1
Q ss_pred ccccCeeEEEEEcCcccHHHHHHHHH-HHH-CCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHH-----H
Q 012794 20 KLAEGIKLYAISTTATSKRTILSDLI-TVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRE-----R 91 (456)
Q Consensus 20 ~~~~~i~~~~~~~~~~~k~~~L~~ll-~~~-~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~-----~ 91 (456)
....++.++ +.++...|+..+...+ ..+ ...+++||||||++.|+.|++.|.+ .+ ..|||+|+|.+|+ +
T Consensus 240 l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~ 316 (844)
T TIGR02621 240 LAAKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKE 316 (844)
T ss_pred ccccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHH
Confidence 444566665 3444444554333322 212 2357899999999999999999985 33 8999999999999 8
Q ss_pred HHhcccC----CC-------eEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCc-eEEEee
Q 012794 92 TLNGFRQ----GK-------FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEG-TAILMF 154 (456)
Q Consensus 92 ~l~~Fr~----g~-------~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g-~~i~~~ 154 (456)
++++|++ +. ..|||||+++++||||+. ++||++..| .++|+||+||++|+|+.+ ..++++
T Consensus 317 il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 317 IFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred HHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 8999987 43 689999999999999987 888987766 699999999999999754 435555
No 66
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=3.4e-16 Score=169.06 Aligned_cols=125 Identities=27% Similarity=0.330 Sum_probs=111.0
Q ss_pred cCcccHHHHHHHHHH-HHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccc
Q 012794 32 TTATSKRTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 109 (456)
Q Consensus 32 ~~~~~k~~~L~~ll~-~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv 109 (456)
.....|..+|.+.+. .+..+.++||||+|++.++.|+..|.+ ++.+.+||+++.+.+++.+.++++.|. |+|||++
T Consensus 420 ~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnm 497 (796)
T PRK12906 420 PTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNM 497 (796)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEecc
Confidence 344568777777664 446678999999999999999999985 899999999999888888888888777 9999999
Q ss_pred cccccCc---Cccc-----eEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhh
Q 012794 110 AARGLDI---PNVD-----LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 158 (456)
Q Consensus 110 ~~~Gidi---p~v~-----~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e 158 (456)
|+||+|| ++|. |||+++.|.+...|.|+.|||||.|.+|.+..|++..+
T Consensus 498 AGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 498 AGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred ccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 9999999 4899 99999999999999999999999999999999988664
No 67
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.68 E-value=7.6e-17 Score=126.91 Aligned_cols=76 Identities=39% Similarity=0.768 Sum_probs=72.3
Q ss_pred HHH-hcCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCC
Q 012794 70 ALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 145 (456)
Q Consensus 70 ~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g 145 (456)
.|. .++.+..+||+|++.+|+.+++.|+++...|||||+++++|||+|.+++||++++|+++..|+|++||++|.|
T Consensus 2 ~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 355 3789999999999999999999999999999999999999999999999999999999999999999999976
No 68
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=9.6e-16 Score=166.71 Aligned_cols=126 Identities=26% Similarity=0.312 Sum_probs=112.0
Q ss_pred cCcccHHHHHHHHHHH-HCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccc
Q 012794 32 TTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 109 (456)
Q Consensus 32 ~~~~~k~~~L~~ll~~-~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv 109 (456)
....+|..+|...+.. +..+.++||||+|++.++.|+..|.. ++.+.+||+ .|.+|+..+.+|+.+...|+||||+
T Consensus 578 ~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNM 655 (1025)
T PRK12900 578 KTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNM 655 (1025)
T ss_pred cCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccC
Confidence 4555788888887754 45678999999999999999999985 899999997 5999999999999999999999999
Q ss_pred cccccCcC---ccc-----eEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhH
Q 012794 110 AARGLDIP---NVD-----LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 159 (456)
Q Consensus 110 ~~~Gidip---~v~-----~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~ 159 (456)
|+||+||+ .|. +||+++.|.+...|.|++|||||+|.+|.+++|++..+.
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 99999999 554 459999999999999999999999999999999987653
No 69
>PRK00254 ski2-like helicase; Provisional
Probab=99.67 E-value=4.8e-16 Score=171.34 Aligned_cols=125 Identities=26% Similarity=0.405 Sum_probs=100.2
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHh----------------------------------cCCEEEEeCCCCHHHHHHHHh
Q 012794 49 AKGGKTIVFTQTKRDADEVSLALTS----------------------------------IIASEALHGDISQHQRERTLN 94 (456)
Q Consensus 49 ~~~~~~IIF~~t~~~a~~l~~~L~~----------------------------------~~~~~~lhg~~~~~~R~~~l~ 94 (456)
..+.++||||+|+..|+.++..|.. ...+.++|++|++++|..+++
T Consensus 236 ~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~ 315 (720)
T PRK00254 236 KKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIED 315 (720)
T ss_pred HhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHH
Confidence 3468999999999999888766632 124889999999999999999
Q ss_pred cccCCCeEEEEeccccccccCcCccceEEe-------cCCCC-ChhHHHHHhcccccCC--CCceEEEeeChhhHHHHHH
Q 012794 95 GFRQGKFTVLVATDVAARGLDIPNVDLIIH-------YELPN-DPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTVRS 164 (456)
Q Consensus 95 ~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~-------~~~p~-~~~~y~qr~GR~gR~g--~~g~~i~~~~~~e~~~~~~ 164 (456)
.|++|.++|||||+++++|+|+|.+++||. ++.|. ++.+|+||+|||||.| ..|.+++++...+.. +.
T Consensus 316 ~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~--~~ 393 (720)
T PRK00254 316 AFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPS--KL 393 (720)
T ss_pred HHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchH--HH
Confidence 999999999999999999999999999994 55544 5779999999999975 679999998765422 12
Q ss_pred HHHHhCCCcee
Q 012794 165 LERDVGCKFEF 175 (456)
Q Consensus 165 ie~~~~~~~~~ 175 (456)
+++++...++.
T Consensus 394 ~~~~~~~~pe~ 404 (720)
T PRK00254 394 MERYIFGKPEK 404 (720)
T ss_pred HHHHHhCCchh
Confidence 44454444433
No 70
>PRK13766 Hef nuclease; Provisional
Probab=99.67 E-value=5.9e-16 Score=172.34 Aligned_cols=121 Identities=35% Similarity=0.555 Sum_probs=109.4
Q ss_pred ccHHHHHHHHHHHH---CCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCC--------CCHHHHHHHHhcccCCCeE
Q 012794 35 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGD--------ISQHQRERTLNGFRQGKFT 102 (456)
Q Consensus 35 ~~k~~~L~~ll~~~---~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~--------~~~~~R~~~l~~Fr~g~~~ 102 (456)
..|++.|.++|... ..+.++||||+++.+|+.|++.|.. ++.+..+||. |++.+|..++++|+++.++
T Consensus 346 ~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~ 425 (773)
T PRK13766 346 HPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFN 425 (773)
T ss_pred ChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCC
Confidence 46888899988764 3568999999999999999999974 7888899886 9999999999999999999
Q ss_pred EEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeCh
Q 012794 103 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 156 (456)
Q Consensus 103 vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~ 156 (456)
|||||+++++|+|+|++++||+||+|++...|+||+||+||.+. +.+++++..
T Consensus 426 vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~ 478 (773)
T PRK13766 426 VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAK 478 (773)
T ss_pred EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeC
Confidence 99999999999999999999999999999999999999999864 777777754
No 71
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.66 E-value=2.6e-15 Score=159.25 Aligned_cols=123 Identities=33% Similarity=0.555 Sum_probs=106.1
Q ss_pred ccHHHHHHHHHHHH---CCCCcEEEEcCChHHHHHHHHHHHh----cCCEEEEeC--------CCCHHHHHHHHhcccCC
Q 012794 35 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS----IIASEALHG--------DISQHQRERTLNGFRQG 99 (456)
Q Consensus 35 ~~k~~~L~~ll~~~---~~~~~~IIF~~t~~~a~~l~~~L~~----~~~~~~lhg--------~~~~~~R~~~l~~Fr~g 99 (456)
..|++.|..+|..+ .+..++||||.|++.|+.|...|.. ++++..+-| +|+|.++.+++++|++|
T Consensus 394 npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G 473 (746)
T KOG0354|consen 394 NPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDG 473 (746)
T ss_pred ChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCC
Confidence 57888888877654 4567999999999999999999873 234444433 79999999999999999
Q ss_pred CeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhH
Q 012794 100 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 159 (456)
Q Consensus 100 ~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~ 159 (456)
+++|||||+|+++||||+.|++||-||.-.++-..+||.|| ||+ +.|.++++++..+.
T Consensus 474 ~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 474 EINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEV 531 (746)
T ss_pred CccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhH
Confidence 99999999999999999999999999999999999999999 998 57888888875443
No 72
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=1.8e-15 Score=162.96 Aligned_cols=120 Identities=23% Similarity=0.331 Sum_probs=103.7
Q ss_pred ccHHHHHHHHHHHHC-CCCcEEEEcCChHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHhcccCC-CeEEEEecccccc
Q 012794 35 TSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQG-KFTVLVATDVAAR 112 (456)
Q Consensus 35 ~~k~~~L~~ll~~~~-~~~~~IIF~~t~~~a~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g-~~~vLVaTdv~~~ 112 (456)
..|+.++..|+..+. .+.++||||.+...++.++..|. +..|||++++.+|++++++|+++ .+++||+|+++.+
T Consensus 479 p~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgde 554 (732)
T TIGR00603 479 PNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDT 554 (732)
T ss_pred hHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC----CceEECCCCHHHHHHHHHHHHhCCCccEEEEeccccc
Confidence 467777778887663 56799999999999999988773 56799999999999999999975 8899999999999
Q ss_pred ccCcCccceEEecCCCC-ChhHHHHHhcccccCCCCceE-------EEeeChhh
Q 012794 113 GLDIPNVDLIIHYELPN-DPETFVHRSGRTGRAGKEGTA-------ILMFTSSQ 158 (456)
Q Consensus 113 Gidip~v~~VI~~~~p~-~~~~y~qr~GR~gR~g~~g~~-------i~~~~~~e 158 (456)
|||+|++++||+++.|. +...|+||+||++|.++.+.+ |.|++..+
T Consensus 555 GIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 555 SIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred ccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 99999999999999985 999999999999999866654 66776543
No 73
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.64 E-value=2.6e-15 Score=158.90 Aligned_cols=113 Identities=18% Similarity=0.212 Sum_probs=99.1
Q ss_pred cHHHHHHHHHHHH-CCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEec-ccccc
Q 012794 36 SKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT-DVAAR 112 (456)
Q Consensus 36 ~k~~~L~~ll~~~-~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaT-dv~~~ 112 (456)
.+..+|..++..+ ..+.++||||++.++++.|++.|.+ +..+..+||+|++++|..+++.|++++..||||| +++++
T Consensus 328 ~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~e 407 (501)
T PHA02558 328 KRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFST 407 (501)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecc
Confidence 3445555555433 3457899999999999999999985 7899999999999999999999999999999998 99999
Q ss_pred ccCcCccceEEecCCCCChhHHHHHhcccccCCCCc
Q 012794 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEG 148 (456)
Q Consensus 113 Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g 148 (456)
|+|+|++++||++.++.+...|+||+||++|.+...
T Consensus 408 G~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 408 GISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred ccccccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 999999999999999999999999999999987544
No 74
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.63 E-value=2.1e-15 Score=166.20 Aligned_cols=133 Identities=23% Similarity=0.407 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccC
Q 012794 37 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLD 115 (456)
Q Consensus 37 k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gid 115 (456)
.+..+...+..+.+...+||||.++.+|++++..|.+ ++.+..+|++|+..+|+.+..+|-.++++|+|||=+..+|||
T Consensus 471 ~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGId 550 (941)
T KOG0351|consen 471 ALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGID 550 (941)
T ss_pred chHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCC
Confidence 3444444555566788999999999999999999996 789999999999999999999999999999999999999999
Q ss_pred cCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHh
Q 012794 116 IPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 169 (456)
Q Consensus 116 ip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~ 169 (456)
.|+|..||||.+|.+.+.|.|-+||+||.|....|++|+...+...++.+-..-
T Consensus 551 K~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 551 KPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred CCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999998877777664443
No 75
>PRK09401 reverse gyrase; Reviewed
Probab=99.62 E-value=1.4e-15 Score=173.09 Aligned_cols=101 Identities=25% Similarity=0.399 Sum_probs=87.6
Q ss_pred ccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHH---HHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhc
Q 012794 20 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRD---ADEVSLALTS-IIASEALHGDISQHQRERTLNG 95 (456)
Q Consensus 20 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~---a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~ 95 (456)
....+|.|.|+.+. +|...|..++.... .++||||+|+.. |+.|++.|.. ++.+..+||+| ++.+++
T Consensus 301 ~~~rnI~~~yi~~~--~k~~~L~~ll~~l~--~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~ 371 (1176)
T PRK09401 301 FYLRNIVDSYIVDE--DSVEKLVELVKRLG--DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEK 371 (1176)
T ss_pred cccCCceEEEEEcc--cHHHHHHHHHHhcC--CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHH
Confidence 45678899988766 67778888887653 589999999777 9999999995 89999999999 334699
Q ss_pred ccCCCeEEEEe----ccccccccCcCc-cceEEecCCCC
Q 012794 96 FRQGKFTVLVA----TDVAARGLDIPN-VDLIIHYELPN 129 (456)
Q Consensus 96 Fr~g~~~vLVa----Tdv~~~Gidip~-v~~VI~~~~p~ 129 (456)
|++|+++|||| ||+++||||+|+ |.+||||++|.
T Consensus 372 F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 372 FEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred HHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 99999999999 699999999999 89999999996
No 76
>PRK01172 ski2-like helicase; Provisional
Probab=99.61 E-value=5.9e-15 Score=161.80 Aligned_cols=109 Identities=25% Similarity=0.369 Sum_probs=92.3
Q ss_pred HCCCCcEEEEcCChHHHHHHHHHHHhc--------------------------CCEEEEeCCCCHHHHHHHHhcccCCCe
Q 012794 48 YAKGGKTIVFTQTKRDADEVSLALTSI--------------------------IASEALHGDISQHQRERTLNGFRQGKF 101 (456)
Q Consensus 48 ~~~~~~~IIF~~t~~~a~~l~~~L~~~--------------------------~~~~~lhg~~~~~~R~~~l~~Fr~g~~ 101 (456)
...++++||||+|++.|+.++..|... ..+.++|++|++++|..+++.|++|.+
T Consensus 233 ~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i 312 (674)
T PRK01172 233 VNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYI 312 (674)
T ss_pred HhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCC
Confidence 345689999999999999999888632 147789999999999999999999999
Q ss_pred EEEEeccccccccCcCccceEEecC---------CCCChhHHHHHhcccccCC--CCceEEEeeChh
Q 012794 102 TVLVATDVAARGLDIPNVDLIIHYE---------LPNDPETFVHRSGRTGRAG--KEGTAILMFTSS 157 (456)
Q Consensus 102 ~vLVaTdv~~~Gidip~v~~VI~~~---------~p~~~~~y~qr~GR~gR~g--~~g~~i~~~~~~ 157 (456)
+|||||+++++|+|+|...+|| ++ .|.++.+|.||+|||||.| ..|.+++++...
T Consensus 313 ~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 313 KVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred eEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 9999999999999999875555 33 3568899999999999998 457788876543
No 77
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.60 E-value=2.3e-14 Score=155.26 Aligned_cols=151 Identities=25% Similarity=0.399 Sum_probs=117.3
Q ss_pred HHHCCCCcEEEEcCChHHHHHHHHHHHhc--CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEE
Q 012794 46 TVYAKGGKTIVFTQTKRDADEVSLALTSI--IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 123 (456)
Q Consensus 46 ~~~~~~~~~IIF~~t~~~a~~l~~~L~~~--~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI 123 (456)
.....+..+|||+||+..|+.|+..|.+. ..+.++||.++.++|..+.++|++|+++++|||..++-|||+-+|++||
T Consensus 248 ~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVI 327 (814)
T COG1201 248 ELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVI 327 (814)
T ss_pred HHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEE
Confidence 33344568999999999999999999963 6899999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhHHHHHhccccc-CCCCceEEEeeChhh--HHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHHhc
Q 012794 124 HYELPNDPETFVHRSGRTGR-AGKEGTAILMFTSSQ--RRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG 198 (456)
Q Consensus 124 ~~~~p~~~~~y~qr~GR~gR-~g~~g~~i~~~~~~e--~~~~~~ie~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~ 198 (456)
|+..|.++..++||+||+|+ .+.....+++....+ ....-.........++.+.+|.. -+...+.+++..+..
T Consensus 328 q~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~--~LDVLaq~ivg~~~~ 403 (814)
T COG1201 328 QLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKN--PLDVLAQQIVGMALE 403 (814)
T ss_pred EeCCcHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCc--chhHHHHHHHHHHhh
Confidence 99999999999999999987 455566676666532 22333344455556665555533 233344455444433
No 78
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.59 E-value=5.1e-15 Score=168.71 Aligned_cols=101 Identities=20% Similarity=0.366 Sum_probs=85.9
Q ss_pred ccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCCh---HHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhc
Q 012794 20 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTK---RDADEVSLALTS-IIASEALHGDISQHQRERTLNG 95 (456)
Q Consensus 20 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~---~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~ 95 (456)
....+|.|.|+.+.. +...|.+++..+ +.++||||+|+ +.|++|+..|.+ ++.+..+||+|++ .++++
T Consensus 299 ~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~ 370 (1171)
T TIGR01054 299 DTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEK 370 (1171)
T ss_pred ccccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHH
Confidence 455678888876544 345567777665 36899999999 999999999985 7999999999973 68999
Q ss_pred ccCCCeEEEEe----ccccccccCcCc-cceEEecCCC
Q 012794 96 FRQGKFTVLVA----TDVAARGLDIPN-VDLIIHYELP 128 (456)
Q Consensus 96 Fr~g~~~vLVa----Tdv~~~Gidip~-v~~VI~~~~p 128 (456)
|++|+++|||| ||+++||||+|+ |++|||||+|
T Consensus 371 Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 371 FAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred HHcCCCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 99999999999 599999999999 8999998877
No 79
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.58 E-value=1e-14 Score=148.00 Aligned_cols=109 Identities=23% Similarity=0.353 Sum_probs=86.6
Q ss_pred CeeEEEEEcCcccHHHHHHHHHHHH------CCCCcEEEEcCChHHHHHHHHHHHh-c--CCEEEEeCCCCHHHHHHHHh
Q 012794 24 GIKLYAISTTATSKRTILSDLITVY------AKGGKTIVFTQTKRDADEVSLALTS-I--IASEALHGDISQHQRERTLN 94 (456)
Q Consensus 24 ~i~~~~~~~~~~~k~~~L~~ll~~~------~~~~~~IIF~~t~~~a~~l~~~L~~-~--~~~~~lhg~~~~~~R~~~l~ 94 (456)
.+++.++. ....|...+..+++.. ..+.++||||+|+..|+.++..|.+ + +.+..+||.+++.+|++++
T Consensus 240 ~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~- 317 (357)
T TIGR03158 240 PVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM- 317 (357)
T ss_pred ceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc-
Confidence 56666655 4445555554444422 2457999999999999999999985 2 5688899999999998664
Q ss_pred cccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccc
Q 012794 95 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 142 (456)
Q Consensus 95 ~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~g 142 (456)
+..||||||++++|||+|.+ +|| ++ |.+.++|+||+||||
T Consensus 318 -----~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 318 -----QFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -----cCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 67899999999999999987 566 45 899999999999986
No 80
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.54 E-value=1.4e-14 Score=142.82 Aligned_cols=114 Identities=25% Similarity=0.482 Sum_probs=109.1
Q ss_pred CcEEEEcCChHHHHHHHHHHH-hcCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEecCCCCC
Q 012794 52 GKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPND 130 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~ 130 (456)
+-.||||.|+++|+++|-.|. .++.+.++|.+|...+|.++.+++-++++.||+||....+|+|-|+|.+|||+++|.+
T Consensus 256 GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn 335 (641)
T KOG0352|consen 256 GCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQN 335 (641)
T ss_pred cceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhh
Confidence 457999999999999999998 5899999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhcccccCCCCceEEEeeChhhHHHHHHH
Q 012794 131 PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165 (456)
Q Consensus 131 ~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~i 165 (456)
+..|.|-+||+||.|+...|-++|...+...+..|
T Consensus 336 ~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 336 LAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred hHHHHHhccccccCCCccceeeeecccchHHHHHH
Confidence 99999999999999999999999999988877766
No 81
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.53 E-value=2.6e-14 Score=112.41 Aligned_cols=80 Identities=53% Similarity=0.867 Sum_probs=74.3
Q ss_pred HHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccC
Q 012794 66 EVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 144 (456)
Q Consensus 66 ~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~ 144 (456)
.+++.|.. .+.+..+||+|++++|..+++.|+++...|||+|+++++|+|+|.+++||.+++|++...|+|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 45566664 68899999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 012794 145 G 145 (456)
Q Consensus 145 g 145 (456)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 82
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.53 E-value=2.6e-14 Score=145.53 Aligned_cols=133 Identities=23% Similarity=0.386 Sum_probs=113.0
Q ss_pred eeEEEEEc-CcccHHHHHHHHHHHH-------CCCCcEEEEcCChHHHHHHHHHHH-hcCCEEEEeCCCCHHHHHHHHhc
Q 012794 25 IKLYAIST-TATSKRTILSDLITVY-------AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNG 95 (456)
Q Consensus 25 i~~~~~~~-~~~~k~~~L~~ll~~~-------~~~~~~IIF~~t~~~a~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~ 95 (456)
++.+.+.+ ...+|.+++..|.+.. .-.+++|||++++..|.+||..|. +++++.++|++|++.+|..+...
T Consensus 406 lErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~ 485 (830)
T COG1202 406 LERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERA 485 (830)
T ss_pred hhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHH
Confidence 44444444 4678999999988743 124799999999999999999999 58999999999999999999999
Q ss_pred ccCCCeEEEEeccccccccCcCccceEE---ecCCCC-ChhHHHHHhcccccCC--CCceEEEeeChh
Q 012794 96 FRQGKFTVLVATDVAARGLDIPNVDLII---HYELPN-DPETFVHRSGRTGRAG--KEGTAILMFTSS 157 (456)
Q Consensus 96 Fr~g~~~vLVaTdv~~~Gidip~v~~VI---~~~~p~-~~~~y~qr~GR~gR~g--~~g~~i~~~~~~ 157 (456)
|.++.+.++|+|-+++-|+|+|.-.+|+ -++.-| ++..|.|++||+||.+ ..|++++++.+.
T Consensus 486 F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 486 FAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999999999999999999999877665 355555 8999999999999977 568999988654
No 83
>PRK14701 reverse gyrase; Provisional
Probab=99.48 E-value=5.8e-14 Score=163.41 Aligned_cols=138 Identities=17% Similarity=0.264 Sum_probs=112.7
Q ss_pred cccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHH---HHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHh
Q 012794 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRD---ADEVSLALTS-IIASEALHGDISQHQRERTLN 94 (456)
Q Consensus 19 ~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~---a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~ 94 (456)
.....+|.|.|+.+....| ..|.++++.. +..+||||+|++. |++|++.|.. ++.+..+|++ |..+++
T Consensus 301 ~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~ 372 (1638)
T PRK14701 301 RSALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFD 372 (1638)
T ss_pred CCCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHH
Confidence 3456788999987765555 4677777655 4689999999875 5899999985 8999999996 899999
Q ss_pred cccCCCeEEEEec----cccccccCcCc-cceEEecCCCC---ChhHHHHHh-------------cccccCCCCceEEEe
Q 012794 95 GFRQGKFTVLVAT----DVAARGLDIPN-VDLIIHYELPN---DPETFVHRS-------------GRTGRAGKEGTAILM 153 (456)
Q Consensus 95 ~Fr~g~~~vLVaT----dv~~~Gidip~-v~~VI~~~~p~---~~~~y~qr~-------------GR~gR~g~~g~~i~~ 153 (456)
+|++|+++||||| ++++||||+|+ |.+|||||+|. +++.|.|-. ||++|.|....+++.
T Consensus 373 ~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~ 452 (1638)
T PRK14701 373 LFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLD 452 (1638)
T ss_pred HHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHH
Confidence 9999999999999 59999999998 99999999999 888777765 999998877777655
Q ss_pred eChhhHHHHHH
Q 012794 154 FTSSQRRTVRS 164 (456)
Q Consensus 154 ~~~~e~~~~~~ 164 (456)
+.......++.
T Consensus 453 ~~~~~~~~~~~ 463 (1638)
T PRK14701 453 VFPEDVEFLRS 463 (1638)
T ss_pred hHHHHHHHHHH
Confidence 55555444443
No 84
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.48 E-value=1.6e-13 Score=142.60 Aligned_cols=210 Identities=19% Similarity=0.294 Sum_probs=159.5
Q ss_pred ccccccCCCccccCCcccccccCeeEEEEEcCcccHHHH-HHHHHHHH--CCCCcEEEEcCChHHHHHHHHHHHhc---C
Q 012794 2 LNYFVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTI-LSDLITVY--AKGGKTIVFTQTKRDADEVSLALTSI---I 75 (456)
Q Consensus 2 ~~~l~~~~~i~~v~~~~~~~~~~i~~~~~~~~~~~k~~~-L~~ll~~~--~~~~~~IIF~~t~~~a~~l~~~L~~~---~ 75 (456)
..||+..+.+...+..- .|+.+|...+..+.++. +..+++.+ .+.+.+|||....++++.+++.|.+. .
T Consensus 211 S~yF~~a~i~~i~GR~f-----PVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~ 285 (674)
T KOG0922|consen 211 SEYFNNAPILTIPGRTF-----PVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSL 285 (674)
T ss_pred HHHhcCCceEeecCCCC-----ceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhc
Confidence 35677666666555443 67888887776665444 34444444 45678999999999999999999753 1
Q ss_pred ------CEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEecC------------------CCCCh
Q 012794 76 ------ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE------------------LPNDP 131 (456)
Q Consensus 76 ------~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~------------------~p~~~ 131 (456)
.+.++||.|+.+++.++++.-..|..+|+++|++|+..|.||.+.+||+.+ .|.|.
T Consensus 286 ~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISk 365 (674)
T KOG0922|consen 286 PEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISK 365 (674)
T ss_pred cccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechH
Confidence 246799999999999999999999999999999999999999999999655 36688
Q ss_pred hHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHHhcCCcchhhhhHHHH
Q 012794 132 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTA 211 (456)
Q Consensus 132 ~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~ 211 (456)
.+-.||+||+||.+ +|+|+-+|+..+. +.++..+..|+....+..++..++.+...++-.|
T Consensus 366 asA~QRaGRAGRt~-pGkcyRLYte~~~--------------~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F---- 426 (674)
T KOG0922|consen 366 ASANQRAGRAGRTG-PGKCYRLYTESAY--------------DKMPLQTVPEIQRVNLSSAVLQLKALGINDPLRF---- 426 (674)
T ss_pred HHHhhhcccCCCCC-CceEEEeeeHHHH--------------hhcccCCCCceeeechHHHHHHHHhcCCCCcccC----
Confidence 89999999999986 8999999998663 2233444556666777777777777655444333
Q ss_pred HHHHhhcCHHHHHHHHHHHhCCCCC
Q 012794 212 QRLIEEKGTDALAAALAQLSGFSRP 236 (456)
Q Consensus 212 ~~ll~~~~~~~~a~ala~~~~~~~~ 236 (456)
++++.+.++.+..||..|..+...
T Consensus 427 -~f~d~P~~~~l~~AL~~L~~lgal 450 (674)
T KOG0922|consen 427 -PFIDPPPPEALEEALEELYSLGAL 450 (674)
T ss_pred -CCCCCCChHHHHHHHHHHHhcCcc
Confidence 567778888899999888654433
No 85
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.47 E-value=1.3e-14 Score=134.57 Aligned_cols=131 Identities=27% Similarity=0.544 Sum_probs=107.2
Q ss_pred cccCCCccccCCcccccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHhcCCEEEEeCCC
Q 012794 5 FVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDI 84 (456)
Q Consensus 5 l~~~~~i~~v~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~~~~~~lhg~~ 84 (456)
|+..+.-.+|.++...+...++|+|+.....+|...|.+||..+.- .+++||+.+... |
T Consensus 238 FmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeF-NQVvIFvKsv~R-------l------------- 296 (387)
T KOG0329|consen 238 FMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEF-NQVVIFVKSVQR-------L------------- 296 (387)
T ss_pred hhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhh-cceeEeeehhhh-------h-------------
Confidence 4445566678888899999999999999999999999999988754 789999987654 1
Q ss_pred CHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChh-hHHHHH
Q 012794 85 SQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVR 163 (456)
Q Consensus 85 ~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~-e~~~~~ 163 (456)
+ | ..+ ||||++..||+||..+++|+|||+|.+.++|+||++||||.|.+|.+|+|++.. +...+.
T Consensus 297 ~----------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn 362 (387)
T KOG0329|consen 297 S----------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILN 362 (387)
T ss_pred h----------h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhc
Confidence 0 2 112 899999999999999999999999999999999999999999999999998754 444444
Q ss_pred HHHHHhC
Q 012794 164 SLERDVG 170 (456)
Q Consensus 164 ~ie~~~~ 170 (456)
.+.....
T Consensus 363 ~vqdRf~ 369 (387)
T KOG0329|consen 363 PVQDRFE 369 (387)
T ss_pred hhhHhhh
Confidence 4444433
No 86
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.46 E-value=3.7e-13 Score=147.01 Aligned_cols=210 Identities=19% Similarity=0.288 Sum_probs=157.1
Q ss_pred ccccccCCCccccCCcccccccCeeEEEEEcCc-cc-HHHHHHHHHHHH--CCCCcEEEEcCChHHHHHHHHHHHh-c--
Q 012794 2 LNYFVMFSHSTQVGNQDEKLAEGIKLYAISTTA-TS-KRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-I-- 74 (456)
Q Consensus 2 ~~~l~~~~~i~~v~~~~~~~~~~i~~~~~~~~~-~~-k~~~L~~ll~~~--~~~~~~IIF~~t~~~a~~l~~~L~~-~-- 74 (456)
.+||++.+.+...+... .|+.+|..... .. -.+.+...+..+ ...+.+|||.+-.++.+.+++.|.+ .
T Consensus 211 s~~f~~apvi~i~GR~f-----PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~ 285 (845)
T COG1643 211 SAYFGNAPVIEIEGRTY-----PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELG 285 (845)
T ss_pred HHHcCCCCEEEecCCcc-----ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhcccc
Confidence 35666665565554443 56777755443 33 344555555544 3367999999999999999999985 2
Q ss_pred --CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEecCC------------------CCChhHH
Q 012794 75 --IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL------------------PNDPETF 134 (456)
Q Consensus 75 --~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~------------------p~~~~~y 134 (456)
+.+.+|||.|+.+++.++++.-..++-+|++||+||+.+|.||+|.+||+.++ |.+-.+.
T Consensus 286 ~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA 365 (845)
T COG1643 286 DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASA 365 (845)
T ss_pred CCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhh
Confidence 56889999999999999999988888889999999999999999999996553 4578889
Q ss_pred HHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHHhcCCcc-hhhhhHHHHHH
Q 012794 135 VHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQR 213 (456)
Q Consensus 135 ~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 213 (456)
.||.||+||.+ +|+||-+|+..+.. ..+.-+..||+...+..++..++..-.. ++..| .
T Consensus 366 ~QRaGRAGR~~-pGicyRLyse~~~~--------------~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f-----~ 425 (845)
T COG1643 366 DQRAGRAGRTG-PGICYRLYSEEDFL--------------AFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPF-----P 425 (845)
T ss_pred hhhccccccCC-CceEEEecCHHHHH--------------hcccCCChhhhhcchHHHHHHHHhcCCCCCcccC-----c
Confidence 99999999985 89999999985532 1233456688888888888888776542 33333 4
Q ss_pred HHhhcCHHHHHHHHHHHhCCCCC
Q 012794 214 LIEEKGTDALAAALAQLSGFSRP 236 (456)
Q Consensus 214 ll~~~~~~~~a~ala~~~~~~~~ 236 (456)
+++.++...+.+|+..|..+...
T Consensus 426 fld~P~~~~i~~A~~~L~~LGAl 448 (845)
T COG1643 426 FLDPPPEAAIQAALTLLQELGAL 448 (845)
T ss_pred cCCCCChHHHHHHHHHHHHcCCc
Confidence 66777778888877777654433
No 87
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.39 E-value=8.7e-12 Score=131.00 Aligned_cols=134 Identities=21% Similarity=0.389 Sum_probs=111.9
Q ss_pred cCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHH--------HHHHHHHHHh---cCCEEEEeCCCCHHHHHH
Q 012794 23 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRD--------ADEVSLALTS---IIASEALHGDISQHQRER 91 (456)
Q Consensus 23 ~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~--------a~~l~~~L~~---~~~~~~lhg~~~~~~R~~ 91 (456)
..|.-+++. .+.+.+++..+.....++.++.|.|+-.++ |.++++.|.. .+.+..+||.|+.+++++
T Consensus 447 kpI~T~~i~--~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~ 524 (677)
T COG1200 447 KPITTVVIP--HERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDA 524 (677)
T ss_pred CceEEEEec--cccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHH
Confidence 445565554 345666777777777788999999987554 4566667764 256899999999999999
Q ss_pred HHhcccCCCeEEEEeccccccccCcCccceEEecCCCC-ChhHHHHHhcccccCCCCceEEEeeChhh
Q 012794 92 TLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN-DPETFVHRSGRTGRAGKEGTAILMFTSSQ 158 (456)
Q Consensus 92 ~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~-~~~~y~qr~GR~gR~g~~g~~i~~~~~~e 158 (456)
+|++|++++++|||||.|.+.|||+|+.+++|.++.-. -..+..|-.||+||...+..|++++.+..
T Consensus 525 vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 525 VMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred HHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 99999999999999999999999999999988877643 78899999999999999999999998765
No 88
>PF08152 GUCT: GUCT (NUC152) domain; InterPro: IPR012562 This is the C-terminal domain found in the RNA helicase II / Gu protein family [].; GO: 0003723 RNA binding, 0004386 helicase activity, 0005524 ATP binding, 0005634 nucleus; PDB: 2E29_A.
Probab=99.38 E-value=5.8e-13 Score=108.78 Aligned_cols=95 Identities=38% Similarity=0.563 Sum_probs=53.3
Q ss_pred CCCCCCCCccccCCCCceEEEEEeecCccccCCCChhHHHHHHHhhCCC-CCCccccEEEeecCccceeeeecCHHHHHH
Q 012794 232 GFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPT-AADEIGKIHIIADDRVQGAVFDLPEEIAKE 310 (456)
Q Consensus 232 ~~~~~~~~r~l~~~~~g~~t~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~ig~i~~~~~~~~~~~~~dv~~~~a~~ 310 (456)
|+.+ ++.|||+++.+|++|+.+..+.+ .-.+..++..|.+..+. ..+.|++|+++++. +|+|||||++.+++
T Consensus 1 G~t~-~~~RSLLt~~~g~vTl~l~~~~~----i~~~~y~~~~L~~~L~e~~~~~v~~m~l~~d~--~GavFDvP~~~~~~ 73 (97)
T PF08152_consen 1 GYTE-IKQRSLLTSEEGFVTLQLTCSRE----IRSPGYAWRILRRQLSEEIADKVKGMTLLKDK--MGAVFDVPSEIAEE 73 (97)
T ss_dssp S-S--------------EEEEEEE-SS------SSTHHHHHHHHHHS-HHHHTT-EEEEE-TTS--SEEEEEEEHHHHHH
T ss_pred CCCC-CCccccccCCCCCEEEEEEcCCc----CCCchhHHHHHHHhcCHHHHHhhCcEEEecCC--CEEEEEChHHHHHH
Confidence 3556 78899999999999999988753 45677888888877664 56789999999986 69999999999999
Q ss_pred HHhhcCCC-CCceeecccCCCccC
Q 012794 311 LLNKQIPP-GNTISKITKLPALQD 333 (456)
Q Consensus 311 ~~~~~~~~-g~~l~~~t~LP~l~~ 333 (456)
+++.|.+. ++.++++++||+|++
T Consensus 74 ~~~~~~~~~~~~l~v~~~LPeL~e 97 (97)
T PF08152_consen 74 FLAKWEDSRGWQLSVATELPELQE 97 (97)
T ss_dssp HHHH--SS-S-EEE----------
T ss_pred HHHhCcccCCcEEEEcccCcCccC
Confidence 99999985 999999999999974
No 89
>PRK09694 helicase Cas3; Provisional
Probab=99.38 E-value=2.7e-12 Score=142.03 Aligned_cols=107 Identities=25% Similarity=0.449 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHhc----CCEEEEeCCCCHHHH----HHHHhcc-cCCC---eEEE
Q 012794 37 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI----IASEALHGDISQHQR----ERTLNGF-RQGK---FTVL 104 (456)
Q Consensus 37 k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~----~~~~~lhg~~~~~~R----~~~l~~F-r~g~---~~vL 104 (456)
...++..+++....++++||||||++.|+++++.|.+. ..+..+|+.+++.+| +++++.| ++++ ..||
T Consensus 546 ~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~IL 625 (878)
T PRK09694 546 DLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRIL 625 (878)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEE
Confidence 34556666666666789999999999999999999853 469999999999999 4677888 6665 4799
Q ss_pred EeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCC
Q 012794 105 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 146 (456)
Q Consensus 105 VaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~ 146 (456)
|||+|+++|||| ++++||....| ++.|+||+||++|.+.
T Consensus 626 VaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 626 VATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999999999999 58999998887 6899999999999874
No 90
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.38 E-value=1.1e-11 Score=135.18 Aligned_cols=125 Identities=22% Similarity=0.243 Sum_probs=107.4
Q ss_pred cCcccHHHHHHH-HHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccc
Q 012794 32 TTATSKRTILSD-LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 109 (456)
Q Consensus 32 ~~~~~k~~~L~~-ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv 109 (456)
.....|..++.+ +...+..+.++||||+|++.++.|+..|.+ ++.+.+||+.+.+.+++.+.++|+.|. |+||||+
T Consensus 424 ~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNm 501 (896)
T PRK13104 424 LTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNM 501 (896)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccC
Confidence 344567665554 555667789999999999999999999995 899999999999999999999999995 9999999
Q ss_pred cccccCcCc---------------------------------c-----ceEEecCCCCChhHHHHHhcccccCCCCceEE
Q 012794 110 AARGLDIPN---------------------------------V-----DLIIHYELPNDPETFVHRSGRTGRAGKEGTAI 151 (456)
Q Consensus 110 ~~~Gidip~---------------------------------v-----~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i 151 (456)
|+||+||.= | -|||-...+.+...--|-.||+||.|.+|.+-
T Consensus 502 AGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~ 581 (896)
T PRK13104 502 AGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSR 581 (896)
T ss_pred ccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceE
Confidence 999999851 1 26888889999999999999999999999998
Q ss_pred EeeChhh
Q 012794 152 LMFTSSQ 158 (456)
Q Consensus 152 ~~~~~~e 158 (456)
.|++-.+
T Consensus 582 f~lSleD 588 (896)
T PRK13104 582 FYLSLED 588 (896)
T ss_pred EEEEcCc
Confidence 8877544
No 91
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.36 E-value=2.1e-12 Score=133.42 Aligned_cols=207 Identities=17% Similarity=0.274 Sum_probs=154.0
Q ss_pred CeeEEEEEcCcccHHHHHHH-HHHHH--CCCCcEEEEcCChHHHHHHHHHHHhc----------CCEEEEeCCCCHHHHH
Q 012794 24 GIKLYAISTTATSKRTILSD-LITVY--AKGGKTIVFTQTKRDADEVSLALTSI----------IASEALHGDISQHQRE 90 (456)
Q Consensus 24 ~i~~~~~~~~~~~k~~~L~~-ll~~~--~~~~~~IIF~~t~~~a~~l~~~L~~~----------~~~~~lhg~~~~~~R~ 90 (456)
.|+.+|-..+..+.+++... +++.+ .+.+.+|||..-.++.+.+.+.|... +.+.+||+.||...+.
T Consensus 443 PVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQa 522 (902)
T KOG0923|consen 443 PVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQA 522 (902)
T ss_pred ceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHH
Confidence 46777877787777665444 44443 34578999999998888877777531 4578999999999999
Q ss_pred HHHhcccCCCeEEEEeccccccccCcCccceEEecC------------------CCCChhHHHHHhcccccCCCCceEEE
Q 012794 91 RTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE------------------LPNDPETFVHRSGRTGRAGKEGTAIL 152 (456)
Q Consensus 91 ~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~------------------~p~~~~~y~qr~GR~gR~g~~g~~i~ 152 (456)
++++.--.|..+|++||++|+..|.|++|.+||+-+ .|.+..+-.||+||+||.| +|+|+-
T Consensus 523 kIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfR 601 (902)
T KOG0923|consen 523 KIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFR 601 (902)
T ss_pred hhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEE
Confidence 999999999999999999999999999999999644 3567888899999999997 899999
Q ss_pred eeChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhcCHHHHHHHHHHHhC
Q 012794 153 MFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 232 (456)
Q Consensus 153 ~~~~~e~~~~~~ie~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~a~ala~~~~ 232 (456)
+|+... +...+|. . +..+|....+..++..|+++--.++-+| ++++.+..+.|..+|..|..
T Consensus 602 LYt~~a--Y~~eLE~--------~---t~PEIqRtnL~nvVL~LkSLGI~Dl~~F-----dFmDpPp~etL~~aLE~Lya 663 (902)
T KOG0923|consen 602 LYTAWA--YEHELEE--------M---TVPEIQRTNLGNVVLLLKSLGIHDLIHF-----DFLDPPPTETLLKALEQLYA 663 (902)
T ss_pred eechhh--hhhhhcc--------C---CCcceeeccchhHHHHHHhcCcchhccc-----ccCCCCChHHHHHHHHHHHH
Confidence 998743 3333332 2 2235556677777777777654444444 56777888999999999877
Q ss_pred CCCCCCCccccCCCCce
Q 012794 233 FSRPPSSRSLINHEQGW 249 (456)
Q Consensus 233 ~~~~~~~r~l~~~~~g~ 249 (456)
+......-.|+.....|
T Consensus 664 LGALn~~GeLTk~GrrM 680 (902)
T KOG0923|consen 664 LGALNHLGELTKLGRRM 680 (902)
T ss_pred hhccccccchhhhhhhh
Confidence 66554444444333333
No 92
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.36 E-value=4.5e-12 Score=138.81 Aligned_cols=118 Identities=28% Similarity=0.506 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHhc--------------------------------------CCEEE
Q 012794 38 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI--------------------------------------IASEA 79 (456)
Q Consensus 38 ~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~--------------------------------------~~~~~ 79 (456)
..++..++..+..++++||||+++..+...|..|.+. ..+..
T Consensus 240 ~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gvaf 319 (766)
T COG1204 240 NLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAF 319 (766)
T ss_pred HHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccc
Confidence 5555666666777899999999999999999888731 03677
Q ss_pred EeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEE----ecC-----CCCChhHHHHHhcccccCC--CCc
Q 012794 80 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII----HYE-----LPNDPETFVHRSGRTGRAG--KEG 148 (456)
Q Consensus 80 lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI----~~~-----~p~~~~~y~qr~GR~gR~g--~~g 148 (456)
+|++|+.++|..+.+.|++|+++|||||+.+|+|+|+|.-.+|| -|+ .+.++-+|+|+.|||||.| ..|
T Consensus 320 HhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G 399 (766)
T COG1204 320 HHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYG 399 (766)
T ss_pred cccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCC
Confidence 89999999999999999999999999999999999999888888 466 5678999999999999988 557
Q ss_pred eEEEeeC
Q 012794 149 TAILMFT 155 (456)
Q Consensus 149 ~~i~~~~ 155 (456)
.++++..
T Consensus 400 ~~~i~~~ 406 (766)
T COG1204 400 EAIILAT 406 (766)
T ss_pred cEEEEec
Confidence 7777763
No 93
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.36 E-value=7.6e-12 Score=136.15 Aligned_cols=125 Identities=24% Similarity=0.245 Sum_probs=109.7
Q ss_pred cCcccHHHHHHHHHHH-HCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccc
Q 012794 32 TTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 109 (456)
Q Consensus 32 ~~~~~k~~~L~~ll~~-~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv 109 (456)
....+|..+|...+.. +..+.++||||+|++.++.|+..|.+ ++.+..||+. +.+|+..+.+|+.+...|+||||+
T Consensus 410 ~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNm 487 (830)
T PRK12904 410 KTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNM 487 (830)
T ss_pred ECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEeccc
Confidence 3555788888877754 45678999999999999999999985 7999999996 899999999999999999999999
Q ss_pred cccccCcCcc--------------------------------------ceEEecCCCCChhHHHHHhcccccCCCCceEE
Q 012794 110 AARGLDIPNV--------------------------------------DLIIHYELPNDPETFVHRSGRTGRAGKEGTAI 151 (456)
Q Consensus 110 ~~~Gidip~v--------------------------------------~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i 151 (456)
|+||+||+-= -|||-...|.+...--|-.||+||.|.+|.+-
T Consensus 488 AGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~ 567 (830)
T PRK12904 488 AGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSR 567 (830)
T ss_pred ccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCcee
Confidence 9999999742 27888999999999999999999999999998
Q ss_pred EeeChhh
Q 012794 152 LMFTSSQ 158 (456)
Q Consensus 152 ~~~~~~e 158 (456)
.|++-.+
T Consensus 568 f~lSleD 574 (830)
T PRK12904 568 FYLSLED 574 (830)
T ss_pred EEEEcCc
Confidence 8887544
No 94
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.35 E-value=5.9e-12 Score=140.82 Aligned_cols=137 Identities=18% Similarity=0.362 Sum_probs=113.7
Q ss_pred CcccHHHHHHHHHHHH-CCCCcEEEEcCChHHHHHHHHHHH-hcCCEEEEeCCCCHHHHHHHHhcccCC---CeEEEEec
Q 012794 33 TATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQG---KFTVLVAT 107 (456)
Q Consensus 33 ~~~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~a~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g---~~~vLVaT 107 (456)
....|+.+|..||..+ ..+.++|||+......+.|...|. .++....|||.++..+|..+++.|.+. .+-+|++|
T Consensus 468 e~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLST 547 (1033)
T PLN03142 468 ENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLST 547 (1033)
T ss_pred hhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEec
Confidence 3457899999988765 346799999999999999999998 478999999999999999999999753 35678999
Q ss_pred cccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEe--eCh--hhHHHHHHHHHHh
Q 012794 108 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM--FTS--SQRRTVRSLERDV 169 (456)
Q Consensus 108 dv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~--~~~--~e~~~~~~ie~~~ 169 (456)
.+++.|||+..+++||+||+||++..+.|+++|+.|.|++..+.++ ++. -|...+....+++
T Consensus 548 rAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl 613 (1033)
T PLN03142 548 RAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKL 613 (1033)
T ss_pred cccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987655544 332 2445555444443
No 95
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.35 E-value=1.9e-11 Score=133.03 Aligned_cols=123 Identities=24% Similarity=0.307 Sum_probs=106.5
Q ss_pred cccHHHHH-HHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccc
Q 012794 34 ATSKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111 (456)
Q Consensus 34 ~~~k~~~L-~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~ 111 (456)
...|..++ .++...+..+.++||||+|++.++.|+..|.. ++.+.+||+.+++.+++.+.++|+.|. |+||||+|+
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAG 508 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAG 508 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcC
Confidence 34555444 44555667788999999999999999999985 899999999999999999999999998 999999999
Q ss_pred cccCcCc--------------------------------c-----ceEEecCCCCChhHHHHHhcccccCCCCceEEEee
Q 012794 112 RGLDIPN--------------------------------V-----DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMF 154 (456)
Q Consensus 112 ~Gidip~--------------------------------v-----~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~ 154 (456)
||+||.= | -|||-...+.+...--|-.||+||.|.+|.+..|+
T Consensus 509 RGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~l 588 (908)
T PRK13107 509 RGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYL 588 (908)
T ss_pred CCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEE
Confidence 9999861 1 27888899999999999999999999999998888
Q ss_pred Chhh
Q 012794 155 TSSQ 158 (456)
Q Consensus 155 ~~~e 158 (456)
+-.+
T Consensus 589 SlED 592 (908)
T PRK13107 589 SMED 592 (908)
T ss_pred EeCc
Confidence 7554
No 96
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.30 E-value=1.5e-11 Score=119.87 Aligned_cols=127 Identities=25% Similarity=0.473 Sum_probs=111.0
Q ss_pred cHHHHHHHHHHHH---CCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccc
Q 012794 36 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111 (456)
Q Consensus 36 ~k~~~L~~ll~~~---~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~ 111 (456)
+.-+.+.++.+.+ -.+...||||-++..+++++..|++ ++.+..+|..|.+.++.-+-+.+..++++|+|||-+..
T Consensus 299 n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafg 378 (695)
T KOG0353|consen 299 NEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFG 378 (695)
T ss_pred ChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeec
Confidence 3444455555443 3456789999999999999999996 79999999999999999999999999999999999999
Q ss_pred cccCcCccceEEecCCCCChhHHHH-------------------------------------------HhcccccCCCCc
Q 012794 112 RGLDIPNVDLIIHYELPNDPETFVH-------------------------------------------RSGRTGRAGKEG 148 (456)
Q Consensus 112 ~Gidip~v~~VI~~~~p~~~~~y~q-------------------------------------------r~GR~gR~g~~g 148 (456)
+|||-|+|.+||+..+|.+++.|.| -.||+||.+.+.
T Consensus 379 mgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a 458 (695)
T KOG0353|consen 379 MGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKA 458 (695)
T ss_pred ccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcc
Confidence 9999999999999999999999999 789999999999
Q ss_pred eEEEeeChhhHHHH
Q 012794 149 TAILMFTSSQRRTV 162 (456)
Q Consensus 149 ~~i~~~~~~e~~~~ 162 (456)
.||++|.-.+...+
T Consensus 459 ~cilyy~~~difk~ 472 (695)
T KOG0353|consen 459 DCILYYGFADIFKI 472 (695)
T ss_pred cEEEEechHHHHhH
Confidence 99999976554333
No 97
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=1e-11 Score=131.11 Aligned_cols=99 Identities=25% Similarity=0.448 Sum_probs=80.6
Q ss_pred HHHHHHHHHhc---CCEEEEeCCCCHHHH--HHHHhcccCCCeEEEEeccccccccCcCccceEE--ecCC----CC---
Q 012794 64 ADEVSLALTSI---IASEALHGDISQHQR--ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII--HYEL----PN--- 129 (456)
Q Consensus 64 a~~l~~~L~~~---~~~~~lhg~~~~~~R--~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI--~~~~----p~--- 129 (456)
++.+++.|.+. ..+..+|+++++.++ +++++.|++++++|||+|+++++|+|+|+|++|+ ++|. |.
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra 350 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRA 350 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccch
Confidence 57777878753 578899999988766 8999999999999999999999999999999875 6664 32
Q ss_pred ---ChhHHHHHhcccccCCCCceEEEeeChhhHHHH
Q 012794 130 ---DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 162 (456)
Q Consensus 130 ---~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~ 162 (456)
....|+|++||+||.++.|.+++.....+...+
T Consensus 351 ~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~~~~ 386 (505)
T TIGR00595 351 AERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNHPAI 386 (505)
T ss_pred HHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCCHHH
Confidence 256789999999999999999876544443333
No 98
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.28 E-value=4.7e-11 Score=121.37 Aligned_cols=128 Identities=27% Similarity=0.423 Sum_probs=110.0
Q ss_pred cHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecccccccc
Q 012794 36 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 114 (456)
Q Consensus 36 ~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gi 114 (456)
+--+++.++-.....+.++||-+-|+++|+.|+++|.. ++++..+|+++..-+|.+++..+|.|.++|||.-+++-+||
T Consensus 431 QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGL 510 (663)
T COG0556 431 QVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (663)
T ss_pred cHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccC
Confidence 34455556555566789999999999999999999995 89999999999999999999999999999999999999999
Q ss_pred CcCccceEEecC-----CCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHH
Q 012794 115 DIPNVDLIIHYE-----LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 164 (456)
Q Consensus 115 dip~v~~VI~~~-----~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ 164 (456)
|+|.|.+|..+| +..+..+.+|-+|||+|- -.|.+|++...-...+-+.
T Consensus 511 DiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~iT~sM~~A 564 (663)
T COG0556 511 DLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKA 564 (663)
T ss_pred CCcceeEEEEeecCccccccccchHHHHHHHHhhc-cCCeEEEEchhhhHHHHHH
Confidence 999999988766 567999999999999995 4789999876544443333
No 99
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.27 E-value=3.1e-11 Score=131.96 Aligned_cols=103 Identities=23% Similarity=0.363 Sum_probs=83.7
Q ss_pred HHHHHHHHHHh---cCCEEEEeCCCCH--HHHHHHHhcccCCCeEEEEeccccccccCcCccceEE--ecCCCCC-----
Q 012794 63 DADEVSLALTS---IIASEALHGDISQ--HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII--HYELPND----- 130 (456)
Q Consensus 63 ~a~~l~~~L~~---~~~~~~lhg~~~~--~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI--~~~~p~~----- 130 (456)
.++.+++.|.+ ...+..+|+++.+ .+++++++.|++++++|||+|+++++|+|+|+|++|+ ++|.+.+
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfr 517 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFR 517 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccc
Confidence 45677777775 3578999999975 5789999999999999999999999999999999985 5565543
Q ss_pred -----hhHHHHHhcccccCCCCceEEEeeChhhHHHHHHH
Q 012794 131 -----PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165 (456)
Q Consensus 131 -----~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~i 165 (456)
...|+|++||+||.++.|.+++.....+...++.+
T Consensus 518 a~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~ 557 (679)
T PRK05580 518 ASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQAL 557 (679)
T ss_pred hHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHH
Confidence 36799999999999999999987665554444433
No 100
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.25 E-value=6e-11 Score=123.63 Aligned_cols=107 Identities=32% Similarity=0.508 Sum_probs=96.3
Q ss_pred cHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecccccccc
Q 012794 36 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 114 (456)
Q Consensus 36 ~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gi 114 (456)
.|...+..++..+....++||||.++.+++.++..+.. .+ +..+.++.++.+|+.+++.|+.+.+++||++.++..|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGv 346 (442)
T COG1061 268 RKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGV 346 (442)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeecccee
Confidence 45555555555544467999999999999999999985 45 88999999999999999999999999999999999999
Q ss_pred CcCccceEEecCCCCChhHHHHHhccccc
Q 012794 115 DIPNVDLIIHYELPNDPETFVHRSGRTGR 143 (456)
Q Consensus 115 dip~v~~VI~~~~p~~~~~y~qr~GR~gR 143 (456)
|+|+++++|...+..+...|+||+||.-|
T Consensus 347 DiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 347 DIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred cCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 99999999999999999999999999999
No 101
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.25 E-value=1.8e-11 Score=126.97 Aligned_cols=205 Identities=19% Similarity=0.300 Sum_probs=143.0
Q ss_pred cccccCCCccccCCcccccccCeeEEEEEcCcccHHHHHH-HHHHHH--CCCCcEEEEcCChHHHHHHHHHHHh------
Q 012794 3 NYFVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILS-DLITVY--AKGGKTIVFTQTKRDADEVSLALTS------ 73 (456)
Q Consensus 3 ~~l~~~~~i~~v~~~~~~~~~~i~~~~~~~~~~~k~~~L~-~ll~~~--~~~~~~IIF~~t~~~a~~l~~~L~~------ 73 (456)
+||.+-+...+-+... .|+.+|...+-++..++.. ..+..+ ...+.+|||..-.+.++..+..+..
T Consensus 517 nfFgn~p~f~IpGRTy-----PV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~ 591 (1042)
T KOG0924|consen 517 NFFGNCPQFTIPGRTY-----PVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLD 591 (1042)
T ss_pred HHhCCCceeeecCCcc-----ceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhh
Confidence 4455444444443332 5677777777766655433 344433 3357899999887776665555542
Q ss_pred -----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEecC------------------CCCC
Q 012794 74 -----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE------------------LPND 130 (456)
Q Consensus 74 -----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~------------------~p~~ 130 (456)
.+.+.++++.||+..+.++++.-..+..+++|||++|+..|.||.+.+||+.+ .|.+
T Consensus 592 ~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS 671 (1042)
T KOG0924|consen 592 SAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPIS 671 (1042)
T ss_pred cCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEech
Confidence 15688999999999999999999999999999999999999999999999765 4667
Q ss_pred hhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHHhcCCcchhhhhHHH
Q 012794 131 PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPT 210 (456)
Q Consensus 131 ~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 210 (456)
...-.||+||+||.+ +|+||-+|+.... ... +-+.+..||....+..++..|+.+..+++..|
T Consensus 672 ~AnA~QRaGRAGRt~-pG~cYRlYTe~ay--~~e-----------ml~stvPEIqRTNl~nvVLlLkslgV~dll~F--- 734 (1042)
T KOG0924|consen 672 QANADQRAGRAGRTG-PGTCYRLYTEDAY--KNE-----------MLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKF--- 734 (1042)
T ss_pred hccchhhccccCCCC-CcceeeehhhhHH--Hhh-----------cccCCCchhhhcchhhHHHHHHhcChhhhhCC---
Confidence 788899999999986 8999999987431 111 12233456777777777777776655444443
Q ss_pred HHHHHhhcCHHHHHHHHHHHh
Q 012794 211 AQRLIEEKGTDALAAALAQLS 231 (456)
Q Consensus 211 ~~~ll~~~~~~~~a~ala~~~ 231 (456)
++++.+..+.+..+|-.|.
T Consensus 735 --dFmD~Pped~~~~sly~Lw 753 (1042)
T KOG0924|consen 735 --DFMDPPPEDNLLNSLYQLW 753 (1042)
T ss_pred --CcCCCCHHHHHHHHHHHHH
Confidence 3444444566666666654
No 102
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.24 E-value=4.8e-10 Score=124.17 Aligned_cols=116 Identities=22% Similarity=0.406 Sum_probs=103.1
Q ss_pred HHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHhc---CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcC
Q 012794 41 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 117 (456)
Q Consensus 41 L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~---~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip 117 (456)
=..|++++..++++-..+|..+..+++++.|... ..+.+.||.|+..+-+.+|..|-+++++|||||.+.+.|||||
T Consensus 793 reAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIP 872 (1139)
T COG1197 793 REAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIP 872 (1139)
T ss_pred HHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCC
Confidence 3456677778999999999999999999999864 4689999999999999999999999999999999999999999
Q ss_pred ccceEEecCCC-CChhHHHHHhcccccCCCCceEEEeeCh
Q 012794 118 NVDLIIHYELP-NDPETFVHRSGRTGRAGKEGTAILMFTS 156 (456)
Q Consensus 118 ~v~~VI~~~~p-~~~~~y~qr~GR~gR~g~~g~~i~~~~~ 156 (456)
+++.+|..+.. .-..+..|..||+||..+.+.||+++.+
T Consensus 873 nANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~ 912 (1139)
T COG1197 873 NANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPP 912 (1139)
T ss_pred CCceEEEeccccccHHHHHHhccccCCccceEEEEEeecC
Confidence 99988754433 3678899999999999999999999975
No 103
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.21 E-value=2.7e-10 Score=110.28 Aligned_cols=121 Identities=23% Similarity=0.427 Sum_probs=95.4
Q ss_pred HHHHHHHHH-CCCCcEEEEcCChHHHHHHHHHHHhc---CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccC
Q 012794 40 ILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLD 115 (456)
Q Consensus 40 ~L~~ll~~~-~~~~~~IIF~~t~~~a~~l~~~L~~~---~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gid 115 (456)
.|..+|+.. ..+.+++||+++.+..+++++.|+.. ..++.+|+. ...|.+..++||+|++.+||+|.+++||+.
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVT 370 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVT 370 (441)
T ss_pred HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccc
Confidence 455555544 45679999999999999999999753 356788987 456888999999999999999999999999
Q ss_pred cCccceEE-ecCC-CCChhHHHHHhcccccCC--CCceEEEeeChhhHHHH
Q 012794 116 IPNVDLII-HYEL-PNDPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTV 162 (456)
Q Consensus 116 ip~v~~VI-~~~~-p~~~~~y~qr~GR~gR~g--~~g~~i~~~~~~e~~~~ 162 (456)
+|+|+++| ...- -.+.+..+|.+||+||.- ..|.++.|-......+.
T Consensus 371 fp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~ 421 (441)
T COG4098 371 FPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMK 421 (441)
T ss_pred cccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHH
Confidence 99999865 4433 358899999999999954 45777766554444433
No 104
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.20 E-value=3.6e-10 Score=128.61 Aligned_cols=93 Identities=23% Similarity=0.429 Sum_probs=82.1
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhc-------C---CEEEEeCCCCHHHHHHHHhcccCCCe-EEEEeccccccccCcCcc
Q 012794 51 GGKTIVFTQTKRDADEVSLALTSI-------I---ASEALHGDISQHQRERTLNGFRQGKF-TVLVATDVAARGLDIPNV 119 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~~-------~---~~~~lhg~~~~~~R~~~l~~Fr~g~~-~vLVaTdv~~~Gidip~v 119 (456)
.+++||||.++++|+.+++.|.+. + .+..+||+++ ++..++++|+++.. +|||+++++..|+|+|.|
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v 775 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSI 775 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccc
Confidence 479999999999999998887642 1 3567899986 46789999999876 799999999999999999
Q ss_pred ceEEecCCCCChhHHHHHhcccccCC
Q 012794 120 DLIIHYELPNDPETFVHRSGRTGRAG 145 (456)
Q Consensus 120 ~~VI~~~~p~~~~~y~qr~GR~gR~g 145 (456)
.+||.+.++.|...|+||+||+.|.-
T Consensus 776 ~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 776 CNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred cEEEEecCCCCHHHHHHHHhhhccCC
Confidence 99999999999999999999999953
No 105
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.16 E-value=2.5e-10 Score=124.85 Aligned_cols=181 Identities=18% Similarity=0.292 Sum_probs=141.5
Q ss_pred cHHHHHHHHHHHH---CCCCcEEEEcCChHHHHHHHHHHHh--------cCCEEEEeCCCCHHHHHHHHhcccCCCeEEE
Q 012794 36 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS--------IIASEALHGDISQHQRERTLNGFRQGKFTVL 104 (456)
Q Consensus 36 ~k~~~L~~ll~~~---~~~~~~IIF~~t~~~a~~l~~~L~~--------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vL 104 (456)
-..+++..++..+ ...+.+|||.+...++..+.+.|.. .+.+.++|+.|+..+++.++..--.|..+||
T Consensus 395 id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKII 474 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKII 474 (924)
T ss_pred ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhh
Confidence 4567777777655 3357899999999999999999963 1457889999999999999999999999999
Q ss_pred EeccccccccCcCccceEEecC--------CCC----------ChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHH
Q 012794 105 VATDVAARGLDIPNVDLIIHYE--------LPN----------DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 166 (456)
Q Consensus 105 VaTdv~~~Gidip~v~~VI~~~--------~p~----------~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie 166 (456)
+||++|+..|.|++|-+||+.+ +-. +...-.||.||+||. ++|.||-+|+......+.
T Consensus 475 laTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~~~~--- 550 (924)
T KOG0920|consen 475 LATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEKLM--- 550 (924)
T ss_pred hhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhhhcc---
Confidence 9999999999999999999644 322 455569999999998 699999999875432211
Q ss_pred HHhCCCceecCCCCHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhcCHHHHHHHHHHHhCC
Q 012794 167 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGF 233 (456)
Q Consensus 167 ~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~a~ala~~~~~ 233 (456)
..-+..|++...++++...++-+....+. +.+..+++.+.++++..|+..|..+
T Consensus 551 ----------~~~q~PEilR~pL~~l~L~iK~l~~~~~~---~fLskaldpP~~~~v~~a~~~L~~i 604 (924)
T KOG0920|consen 551 ----------LAYQLPEILRTPLEELCLHIKVLEQGSIK---AFLSKALDPPPADAVDLAIERLKQI 604 (924)
T ss_pred ----------cccCChHHHhChHHHhhheeeeccCCCHH---HHHHHhcCCCChHHHHHHHHHHHHh
Confidence 11235577777888888777755555444 5677889999999888888777643
No 106
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.12 E-value=1.2e-09 Score=109.84 Aligned_cols=204 Identities=17% Similarity=0.307 Sum_probs=150.5
Q ss_pred ccccccCCCccccCCcccccccCeeEEEEEcCcccHHHHHHH-HHHHH--CCCCcEEEEcCChHHHHHHHHHHHh-c---
Q 012794 2 LNYFVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSD-LITVY--AKGGKTIVFTQTKRDADEVSLALTS-I--- 74 (456)
Q Consensus 2 ~~~l~~~~~i~~v~~~~~~~~~~i~~~~~~~~~~~k~~~L~~-ll~~~--~~~~~~IIF~~t~~~a~~l~~~L~~-~--- 74 (456)
+.||.+.+.+.+-+ ...++.+|...+..+.++...+ +++.+ ...+.+|||....++++..++.+.. .
T Consensus 207 q~yf~n~Pll~vpg------~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L 280 (699)
T KOG0925|consen 207 QRYFGNAPLLAVPG------THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNL 280 (699)
T ss_pred HHHhCCCCeeecCC------CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhh
Confidence 34565555444332 3456778888788777776555 44444 3468999999999999999988873 1
Q ss_pred ------CCEEEEeCCCCHHHHHHHHhcccC---C--CeEEEEeccccccccCcCccceEEecC-----------------
Q 012794 75 ------IASEALHGDISQHQRERTLNGFRQ---G--KFTVLVATDVAARGLDIPNVDLIIHYE----------------- 126 (456)
Q Consensus 75 ------~~~~~lhg~~~~~~R~~~l~~Fr~---g--~~~vLVaTdv~~~Gidip~v~~VI~~~----------------- 126 (456)
+.+.+|| ++++..+++.... + ..+|+|+|++++..+.++.|.+||+-+
T Consensus 281 ~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesll 356 (699)
T KOG0925|consen 281 GPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLL 356 (699)
T ss_pred ccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeee
Confidence 4688898 4455555544432 2 358999999999999999999999755
Q ss_pred -CCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHHhcCCcchhh
Q 012794 127 -LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVE 205 (456)
Q Consensus 127 -~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~ 205 (456)
.|.+..+-.||.||+||. ++|+|+.+|++.- +.. .+.+.+..+++++.+..++..++...-+++-
T Consensus 357 v~PISkasA~qR~gragrt-~pGkcfrLYte~~----------~~~---em~~~typeilrsNL~s~VL~LKklgI~dlv 422 (699)
T KOG0925|consen 357 VSPISKASAQQRAGRAGRT-RPGKCFRLYTEEA----------FEK---EMQPQTYPEILRSNLSSTVLQLKKLGIDDLV 422 (699)
T ss_pred eccchHhHHHHHhhhccCC-CCCceEEeecHHh----------hhh---cCCCCCcHHHHHHhhHHHHHHHHhcCccccc
Confidence 367888889999999997 6899999998632 111 2344456789999999999999988777766
Q ss_pred hhHHHHHHHHhhcCHHHHHHHHHHHhCCC
Q 012794 206 FFTPTAQRLIEEKGTDALAAALAQLSGFS 234 (456)
Q Consensus 206 ~~~~~~~~ll~~~~~~~~a~ala~~~~~~ 234 (456)
+| ++++.+.|+.++.||-.|-.+.
T Consensus 423 hf-----dfmDpPAPEtLMrALE~LnYLa 446 (699)
T KOG0925|consen 423 HF-----DFMDPPAPETLMRALEVLNYLA 446 (699)
T ss_pred CC-----cCCCCCChHHHHHHHHHhhhhh
Confidence 66 6778888999998887775433
No 107
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.10 E-value=2.3e-10 Score=123.21 Aligned_cols=116 Identities=29% Similarity=0.487 Sum_probs=98.3
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhc---------------------------------------CCEEEEeCCCCHHHHH
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTSI---------------------------------------IASEALHGDISQHQRE 90 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~~---------------------------------------~~~~~lhg~~~~~~R~ 90 (456)
.+.++||||++|..|+.+|..+... +.++++|.+++.++|+
T Consensus 459 e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~ 538 (1008)
T KOG0950|consen 459 EGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEERE 538 (1008)
T ss_pred cCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHH
Confidence 4557999999999999988666421 1478899999999999
Q ss_pred HHHhcccCCCeEEEEeccccccccCcCccceEEec---C-CCCChhHHHHHhcccccCC--CCceEEEeeChhhHHHHHH
Q 012794 91 RTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY---E-LPNDPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTVRS 164 (456)
Q Consensus 91 ~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~---~-~p~~~~~y~qr~GR~gR~g--~~g~~i~~~~~~e~~~~~~ 164 (456)
.+...|++|.+.|++||+.++.|+++|...++|-+ + .+.+.-.|.||+|||||+| ..|.+|+++.+.+......
T Consensus 539 ~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~ 618 (1008)
T KOG0950|consen 539 IIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRE 618 (1008)
T ss_pred HHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHH
Confidence 99999999999999999999999999999998853 3 2347889999999999998 5589999999888765554
Q ss_pred H
Q 012794 165 L 165 (456)
Q Consensus 165 i 165 (456)
+
T Consensus 619 l 619 (1008)
T KOG0950|consen 619 L 619 (1008)
T ss_pred H
Confidence 3
No 108
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.03 E-value=1.8e-09 Score=116.01 Aligned_cols=106 Identities=28% Similarity=0.416 Sum_probs=91.0
Q ss_pred CcEEEEcCChHHHHHHHHHHHh-cC---------------------------------------CEEEEeCCCCHHHHHH
Q 012794 52 GKTIVFTQTKRDADEVSLALTS-II---------------------------------------ASEALHGDISQHQRER 91 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l~~~L~~-~~---------------------------------------~~~~lhg~~~~~~R~~ 91 (456)
-++||||-+++.|++.|+.|.. .+ .++++||++-+-.++-
T Consensus 568 LP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~ 647 (1248)
T KOG0947|consen 568 LPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEV 647 (1248)
T ss_pred CceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHH
Confidence 4899999999999999999864 11 4788999999999999
Q ss_pred HHhcccCCCeEEEEeccccccccCcCccceEEec----C----CCCChhHHHHHhcccccCC--CCceEEEeeChh
Q 012794 92 TLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY----E----LPNDPETFVHRSGRTGRAG--KEGTAILMFTSS 157 (456)
Q Consensus 92 ~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~----~----~p~~~~~y~qr~GR~gR~g--~~g~~i~~~~~~ 157 (456)
+.--|..|-++||+||...|+|+|+|.-.+|+.. | .-..+-.|.|++|||||-| .+|++|++....
T Consensus 648 VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 648 VELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred HHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 9999999999999999999999999998888832 1 1236789999999999987 778888887643
No 109
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.03 E-value=1.8e-09 Score=120.16 Aligned_cols=151 Identities=23% Similarity=0.400 Sum_probs=117.8
Q ss_pred ccccCeeEEEEEcC---------cccHHHHHHHHHHHH-CCCCcEEEEcCChHHHHHHHH----HHH-hc----CCEEEE
Q 012794 20 KLAEGIKLYAISTT---------ATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSL----ALT-SI----IASEAL 80 (456)
Q Consensus 20 ~~~~~i~~~~~~~~---------~~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~a~~l~~----~L~-~~----~~~~~l 80 (456)
..+...+++.+..+ ..++...+..++... ..+-++|+|+.++..|+.++. .+. .. ..+..+
T Consensus 265 g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~ 344 (851)
T COG1205 265 GSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTY 344 (851)
T ss_pred CCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeec
Confidence 33445556666555 235555556555543 456799999999999999973 332 22 357888
Q ss_pred eCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEecCCCC-ChhHHHHHhcccccCCCCceEEEeeC--hh
Q 012794 81 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN-DPETFVHRSGRTGRAGKEGTAILMFT--SS 157 (456)
Q Consensus 81 hg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~-~~~~y~qr~GR~gR~g~~g~~i~~~~--~~ 157 (456)
+++|...+|.+++..|++|++.++++|++++-||||-+++.||.++.|. +..+++||.||+||.++....++++. +.
T Consensus 345 ~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~ 424 (851)
T COG1205 345 RAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPL 424 (851)
T ss_pred cccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCcc
Confidence 9999999999999999999999999999999999999999999999999 89999999999999987776666654 33
Q ss_pred hHHHHHHHHHHhC
Q 012794 158 QRRTVRSLERDVG 170 (456)
Q Consensus 158 e~~~~~~ie~~~~ 170 (456)
+..++..-+....
T Consensus 425 d~yy~~~p~~~~~ 437 (851)
T COG1205 425 DSYYLRHPEELLE 437 (851)
T ss_pred chhhhhCcHhhhh
Confidence 5566666666655
No 110
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.99 E-value=7.1e-09 Score=114.07 Aligned_cols=140 Identities=21% Similarity=0.352 Sum_probs=106.0
Q ss_pred CeeEEEEEcCcc---cHHHHHHH-----HHHHHCCCCcEEEEcCChHHHHHHHHHHHhc---------------------
Q 012794 24 GIKLYAISTTAT---SKRTILSD-----LITVYAKGGKTIVFTQTKRDADEVSLALTSI--------------------- 74 (456)
Q Consensus 24 ~i~~~~~~~~~~---~k~~~L~~-----ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~--------------------- 74 (456)
.++|.++-+..+ .+.++.++ +++... ..++|||+.+++++.+.|..++..
T Consensus 512 PL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~ag-k~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eil 590 (1674)
T KOG0951|consen 512 PLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAG-KNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREIL 590 (1674)
T ss_pred CccceEeccccCCchHHHHHHHHHHHHHHHHhCC-CCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhh
Confidence 456666655443 23333333 333333 489999999999999888877621
Q ss_pred -----------------CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEE----ecCC------
Q 012794 75 -----------------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII----HYEL------ 127 (456)
Q Consensus 75 -----------------~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI----~~~~------ 127 (456)
+..+.+|++|+..+|..+.+.|++|.++|||+|-.+|+|+|+|.-+++| -|++
T Consensus 591 rtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~ 670 (1674)
T KOG0951|consen 591 RTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWT 670 (1674)
T ss_pred hhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccc
Confidence 2478899999999999999999999999999999999999999988888 3543
Q ss_pred CCChhHHHHHhcccccCC--CCceEEEeeChhhHHHHHH
Q 012794 128 PNDPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTVRS 164 (456)
Q Consensus 128 p~~~~~y~qr~GR~gR~g--~~g~~i~~~~~~e~~~~~~ 164 (456)
+.++.+.+||.||+||.+ ..|..+++....+..+...
T Consensus 671 elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls 709 (1674)
T KOG0951|consen 671 ELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLS 709 (1674)
T ss_pred cCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHH
Confidence 347899999999999976 4567777766666554444
No 111
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.98 E-value=7.2e-09 Score=105.99 Aligned_cols=143 Identities=20% Similarity=0.298 Sum_probs=113.7
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHhcC---------CEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCcc
Q 012794 49 AKGGKTIVFTQTKRDADEVSLALTSII---------ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 119 (456)
Q Consensus 49 ~~~~~~IIF~~t~~~a~~l~~~L~~~~---------~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v 119 (456)
..+-++|-||+.++.|+.|....++.+ .+..+.|+.+.++|.++...+-.|+..-+|||++++-||||..+
T Consensus 523 ~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~L 602 (1034)
T KOG4150|consen 523 QHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHL 602 (1034)
T ss_pred HcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccc
Confidence 456799999999999998866554321 24556799999999999999999999999999999999999999
Q ss_pred ceEEecCCCCChhHHHHHhcccccCCCCceEEEee--ChhhHHHHHHHHHHhCCCceecCCCCHH-HHHHHHHHH
Q 012794 120 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMF--TSSQRRTVRSLERDVGCKFEFVSPPVVE-DVLESSAEQ 191 (456)
Q Consensus 120 ~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~--~~~e~~~~~~ie~~~~~~~~~~~~p~~~-~i~~~~~~~ 191 (456)
+.|++.++|.+...+.|..||+||.++...++.++ .|-+..++..-+..+..+-..+.+.... -++..+++-
T Consensus 603 DAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~~N~~iL~~HlQC 677 (1034)
T KOG4150|consen 603 DAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDSQNKHVLMQHLQC 677 (1034)
T ss_pred eeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeEEecccHHHHHHHHhH
Confidence 99999999999999999999999998887665554 4667888887777777655555444443 333444433
No 112
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.89 E-value=9.4e-09 Score=105.20 Aligned_cols=163 Identities=19% Similarity=0.224 Sum_probs=112.5
Q ss_pred ccCCCccccCCcccccccCeeEEEE-EcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh--cCCEEEEeC
Q 012794 6 VMFSHSTQVGNQDEKLAEGIKLYAI-STTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHG 82 (456)
Q Consensus 6 ~~~~~i~~v~~~~~~~~~~i~~~~~-~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~--~~~~~~lhg 82 (456)
..+..+++|.+--..+.++++...+ ...+-.-.+.+..-++.+. .+.||| |-+++.+-.+...+.+ ...+++++|
T Consensus 312 GepsvldlV~~i~k~TGd~vev~~YeRl~pL~v~~~~~~sl~nlk-~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIYG 389 (700)
T KOG0953|consen 312 GEPSVLDLVRKILKMTGDDVEVREYERLSPLVVEETALGSLSNLK-PGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIYG 389 (700)
T ss_pred CCchHHHHHHHHHhhcCCeeEEEeecccCcceehhhhhhhhccCC-CCCeEE-EeehhhHHHHHHHHHHhcCcceEEEec
Confidence 3566777777666677777665544 2322222222233333333 455655 3366778888888874 356999999
Q ss_pred CCCHHHHHHHHhcccC--CCeEEEEeccccccccCcCccceEEecCC---------CCChhHHHHHhcccccCC---CCc
Q 012794 83 DISQHQRERTLNGFRQ--GKFTVLVATDVAARGLDIPNVDLIIHYEL---------PNDPETFVHRSGRTGRAG---KEG 148 (456)
Q Consensus 83 ~~~~~~R~~~l~~Fr~--g~~~vLVaTdv~~~Gidip~v~~VI~~~~---------p~~~~~y~qr~GR~gR~g---~~g 148 (456)
+||++.|.+.-..|.+ +..+||||||+..+|+|+ ++..||.|++ |.++.+..|-+|||||.| ..|
T Consensus 390 sLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G 468 (700)
T KOG0953|consen 390 SLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQG 468 (700)
T ss_pred CCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCc
Confidence 9999999999999987 789999999999999998 5777777664 346888999999999986 346
Q ss_pred eEEEeeChhhHHHHHHHHHHhCCCcee
Q 012794 149 TAILMFTSSQRRTVRSLERDVGCKFEF 175 (456)
Q Consensus 149 ~~i~~~~~~e~~~~~~ie~~~~~~~~~ 175 (456)
.+.++.. +.+..+.+.+..++++
T Consensus 469 ~vTtl~~----eDL~~L~~~l~~p~ep 491 (700)
T KOG0953|consen 469 EVTTLHS----EDLKLLKRILKRPVEP 491 (700)
T ss_pred eEEEeeH----hhHHHHHHHHhCCchH
Confidence 6666644 3455555555544443
No 113
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=1.4e-08 Score=107.48 Aligned_cols=115 Identities=23% Similarity=0.384 Sum_probs=86.1
Q ss_pred EEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEecCCC--------C----------ChhHHHHHh
Q 012794 77 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP--------N----------DPETFVHRS 138 (456)
Q Consensus 77 ~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p--------~----------~~~~y~qr~ 138 (456)
|.+|++=|+.+.+.++++.--.|..-++|||+||+..|.||.|.+||+.+.- . +..+--||+
T Consensus 607 vLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRA 686 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRA 686 (1172)
T ss_pred EeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhc
Confidence 4556777889999999999999998999999999999999999999975532 2 344558999
Q ss_pred cccccCCCCceEEEeeChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHHhcCCcchhh
Q 012794 139 GRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVE 205 (456)
Q Consensus 139 GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~ 205 (456)
||+||.| .|.||-+|+..=. ...|+.. +..+|++...+.++..++.+.-..+.
T Consensus 687 GRAGRtg-pGHcYRLYSSAVf----------~~~Fe~f---S~PEIlk~Pve~lvLqMKsMnI~kVv 739 (1172)
T KOG0926|consen 687 GRAGRTG-PGHCYRLYSSAVF----------SNDFEEF---SLPEILKKPVESLVLQMKSMNIDKVV 739 (1172)
T ss_pred cccCCCC-CCceeehhhhHHh----------hcchhhh---ccHHHhhCcHHHHHHHHHhcCcccee
Confidence 9999997 8999999976321 1122222 23467777777888777776554433
No 114
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.89 E-value=2.2e-08 Score=108.90 Aligned_cols=99 Identities=25% Similarity=0.467 Sum_probs=79.5
Q ss_pred ccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCC---hHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhc
Q 012794 20 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQT---KRDADEVSLALTS-IIASEALHGDISQHQRERTLNG 95 (456)
Q Consensus 20 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t---~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~ 95 (456)
....+|.+.|+.. .-...+..+++.+.. -.|||+++ ++.|++|++.|.. ++.+..+|+. .++.++.
T Consensus 309 ~~LRNIvD~y~~~---~~~e~~~elvk~lG~--GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~ 378 (1187)
T COG1110 309 EGLRNIVDIYVES---ESLEKVVELVKKLGD--GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALED 378 (1187)
T ss_pred hhhhheeeeeccC---ccHHHHHHHHHHhCC--CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhh
Confidence 4456777777766 334445566766643 57999999 9999999999995 7999999985 3788999
Q ss_pred ccCCCeEEEEec----cccccccCcC-ccceEEecCCC
Q 012794 96 FRQGKFTVLVAT----DVAARGLDIP-NVDLIIHYELP 128 (456)
Q Consensus 96 Fr~g~~~vLVaT----dv~~~Gidip-~v~~VI~~~~p 128 (456)
|..|++++||.+ .++-||||+| .+.++|.|+.|
T Consensus 379 F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 379 FEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred hccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 999999999876 5899999999 56788888866
No 115
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.87 E-value=2.4e-08 Score=108.60 Aligned_cols=122 Identities=20% Similarity=0.364 Sum_probs=96.0
Q ss_pred HHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-c-----------------------CCEEEEeCCCCHHHHHHHHhcccC
Q 012794 43 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-I-----------------------IASEALHGDISQHQRERTLNGFRQ 98 (456)
Q Consensus 43 ~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~-----------------------~~~~~lhg~~~~~~R~~~l~~Fr~ 98 (456)
++++.+..+.+++|||.++..+...|+.|.+ . .....+|++|....|..+.+.|+.
T Consensus 341 kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~ 420 (1230)
T KOG0952|consen 341 KVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKE 420 (1230)
T ss_pred HHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhc
Confidence 3444556678999999999999999988863 1 135678999999999999999999
Q ss_pred CCeEEEEeccccccccCcCccceEE----ecCCC------CChhHHHHHhcccccCC--CCceEEEeeChhhHHHHHH
Q 012794 99 GKFTVLVATDVAARGLDIPNVDLII----HYELP------NDPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTVRS 164 (456)
Q Consensus 99 g~~~vLVaTdv~~~Gidip~v~~VI----~~~~p------~~~~~y~qr~GR~gR~g--~~g~~i~~~~~~e~~~~~~ 164 (456)
|.++||+||..+|+|+|+|+-.+|| .||.- ..+-+.+|..|||||.. ..|.++++.+......+..
T Consensus 421 G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~s 498 (1230)
T KOG0952|consen 421 GHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYES 498 (1230)
T ss_pred CCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHH
Confidence 9999999999999999999765555 23322 24667899999999965 7799998877654444433
No 116
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.79 E-value=6.6e-08 Score=105.02 Aligned_cols=123 Identities=23% Similarity=0.319 Sum_probs=97.2
Q ss_pred CcccHHHHHHH-HHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCC-CeEEEEeccc
Q 012794 33 TATSKRTILSD-LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG-KFTVLVATDV 109 (456)
Q Consensus 33 ~~~~k~~~L~~-ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g-~~~vLVaTdv 109 (456)
....|..++.. +...+.++.++||.|.|.+..+.|+..|.+ ++...+|+.. +.+++..+-+ +.| .-.|.|||++
T Consensus 407 t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk--~~e~EA~IIa-~AG~~GaVTIATNM 483 (925)
T PRK12903 407 TKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAK--QNAREAEIIA-KAGQKGAITIATNM 483 (925)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeeccc--chhhHHHHHH-hCCCCCeEEEeccc
Confidence 44456555544 555667788999999999999999999995 7888888886 4455544433 334 3578999999
Q ss_pred cccccCcCccc--------eEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhh
Q 012794 110 AARGLDIPNVD--------LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 158 (456)
Q Consensus 110 ~~~Gidip~v~--------~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e 158 (456)
|.||.||.--. |||....|.+...--|..||+||.|.+|.+-.|++-.+
T Consensus 484 AGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 484 AGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred ccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecch
Confidence 99999986322 89999999999999999999999999999888876544
No 117
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.78 E-value=5.2e-08 Score=101.12 Aligned_cols=119 Identities=21% Similarity=0.297 Sum_probs=89.4
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh---c--CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEec-----cccccc-cCcCcc
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS---I--IASEALHGDISQHQRERTLNGFRQGKFTVLVAT-----DVAARG-LDIPNV 119 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~---~--~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaT-----dv~~~G-idip~v 119 (456)
...+||.++|++.|.++.+.+.. . +.+.+++|+.+...+..-+++ .++|+||| |.+..| +|+..|
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~----gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLER----GVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhc----CCcEEEeCChHHHHHHHcCCccccce
Confidence 34699999999999999888764 2 559999999999999888887 78999999 578888 999999
Q ss_pred ceEE--------ecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCceecCCC
Q 012794 120 DLII--------HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 179 (456)
Q Consensus 120 ~~VI--------~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~~~~p 179 (456)
.++| ++++-.+++.+++.+.++-| ..++++.+-...++.|...+-.....+.+-
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r------Qtlm~saTwp~~v~~lA~~fl~~~~~i~ig 302 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR------QTLMFSATWPKEVRQLAEDFLNNPIQINVG 302 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc------cEEEEeeeccHHHHHHHHHHhcCceEEEec
Confidence 9988 56677789999999988766 344444444444555544433244444433
No 118
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.77 E-value=6.4e-09 Score=109.38 Aligned_cols=106 Identities=25% Similarity=0.423 Sum_probs=90.3
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhc-C---------------------------------------CEEEEeCCCCHHHHH
Q 012794 51 GGKTIVFTQTKRDADEVSLALTSI-I---------------------------------------ASEALHGDISQHQRE 90 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~~-~---------------------------------------~~~~lhg~~~~~~R~ 90 (456)
..++|||+-++++|+.+|..+.+. + .+.++|++|-+--++
T Consensus 383 ~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE 462 (1041)
T KOG0948|consen 383 YLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKE 462 (1041)
T ss_pred CCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHH
Confidence 468999999999999999888642 1 477889999999999
Q ss_pred HHHhcccCCCeEEEEeccccccccCcCccceEEe----cCCC----CChhHHHHHhcccccCC--CCceEEEeeCh
Q 012794 91 RTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YELP----NDPETFVHRSGRTGRAG--KEGTAILMFTS 156 (456)
Q Consensus 91 ~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~----~~~p----~~~~~y~qr~GR~gR~g--~~g~~i~~~~~ 156 (456)
.+.--|.+|-+++|+||...+.|||+|.-++|+- ||-- .+.-.|+|++|||||-| ..|.||+++..
T Consensus 463 ~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDe 538 (1041)
T KOG0948|consen 463 VIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDE 538 (1041)
T ss_pred HHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecC
Confidence 9999999999999999999999999999888873 3321 26678999999999988 45888888864
No 119
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.74 E-value=1.2e-06 Score=94.15 Aligned_cols=118 Identities=16% Similarity=0.281 Sum_probs=92.0
Q ss_pred HHHHHHHHHHH---CCCCcEEEEcCChHHHHHHHHHHHhc--------CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEe
Q 012794 38 RTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI--------IASEALHGDISQHQRERTLNGFRQGKFTVLVA 106 (456)
Q Consensus 38 ~~~L~~ll~~~---~~~~~~IIF~~t~~~a~~l~~~L~~~--------~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVa 106 (456)
..++..++..+ .-.+-++||.+-....-.|...|..+ +.+..+|+.++..++.++.+....+..++++.
T Consensus 627 f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~s 706 (1282)
T KOG0921|consen 627 FGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILS 706 (1282)
T ss_pred hHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccc
Confidence 34444444433 22568999999999998888877532 56888999999999999999999999999999
Q ss_pred ccccccccCcCccceEEecCC------------------CCChhHHHHHhcccccCCCCceEEEeeCh
Q 012794 107 TDVAARGLDIPNVDLIIHYEL------------------PNDPETFVHRSGRTGRAGKEGTAILMFTS 156 (456)
Q Consensus 107 Tdv~~~Gidip~v~~VI~~~~------------------p~~~~~y~qr~GR~gR~g~~g~~i~~~~~ 156 (456)
|.++..-|.+.++..||+.+. -.+....+||.||++|. ++|.|..+++.
T Consensus 707 tniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 707 TNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred cceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHH
Confidence 999999999999888775442 12556679999999997 57888877654
No 120
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.73 E-value=3.6e-08 Score=109.02 Aligned_cols=116 Identities=23% Similarity=0.321 Sum_probs=93.1
Q ss_pred HHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHhcC-CEEEEeCCCCHHHHHHHHhccc----CCCeEEEEecccccccc
Q 012794 40 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII-ASEALHGDISQHQRERTLNGFR----QGKFTVLVATDVAARGL 114 (456)
Q Consensus 40 ~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~~-~~~~lhg~~~~~~R~~~l~~Fr----~g~~~vLVaTdv~~~Gi 114 (456)
.+..+......+.+++|-|||+..|.+++..|+... .+..+|+.+....|.+.++.++ .....|+|||.|++.|+
T Consensus 429 ~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagv 508 (733)
T COG1203 429 LIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGV 508 (733)
T ss_pred hhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEe
Confidence 344444555677899999999999999999999644 5999999999999998887544 45778999999999999
Q ss_pred CcCccceEEecCCCCChhHHHHHhcccccCC--CCceEEEeeChhh
Q 012794 115 DIPNVDLIIHYELPNDPETFVHRSGRTGRAG--KEGTAILMFTSSQ 158 (456)
Q Consensus 115 dip~v~~VI~~~~p~~~~~y~qr~GR~gR~g--~~g~~i~~~~~~e 158 (456)
|++ .+++|-= +..+++++||+||++|-| ..+..+++.....
T Consensus 509 Did-fd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 509 DID-FDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEER 551 (733)
T ss_pred ccc-cCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeecccC
Confidence 996 6665532 345889999999999999 5677777765443
No 121
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.71 E-value=8.4e-08 Score=105.89 Aligned_cols=136 Identities=18% Similarity=0.351 Sum_probs=113.4
Q ss_pred cccHHHHHHHHHHHHC-CCCcEEEEcCChHHHHHHHHHHH-hcCCEEEEeCCCCHHHHHHHHhcccC---CCeEEEEecc
Q 012794 34 ATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQ---GKFTVLVATD 108 (456)
Q Consensus 34 ~~~k~~~L~~ll~~~~-~~~~~IIF~~t~~~a~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~---g~~~vLVaTd 108 (456)
..-|+.+|..||..+. .+.++|||.......+-|+++|. ++|...-|-|.+.-+.|+.+++.|.. ..+-.|+||-
T Consensus 681 sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTR 760 (1373)
T KOG0384|consen 681 SSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTR 760 (1373)
T ss_pred hcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecc
Confidence 3456677777776663 35799999999999999999999 58999999999999999999999986 3578999999
Q ss_pred ccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCce--EEEeeChh--hHHHHHHHHHHh
Q 012794 109 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGT--AILMFTSS--QRRTVRSLERDV 169 (456)
Q Consensus 109 v~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~--~i~~~~~~--e~~~~~~ie~~~ 169 (456)
+..-|||+-..+.||.||-.|++..-+|...||+|.|++-. +|-|++.. |..++++..+.+
T Consensus 761 AGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~Km 825 (1373)
T KOG0384|consen 761 AGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKM 825 (1373)
T ss_pred cCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999997754 45556543 455555443333
No 122
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.67 E-value=4e-07 Score=97.70 Aligned_cols=124 Identities=21% Similarity=0.257 Sum_probs=95.1
Q ss_pred CcccHHHHHH-HHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecccc
Q 012794 33 TATSKRTILS-DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 110 (456)
Q Consensus 33 ~~~~k~~~L~-~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~ 110 (456)
....|..++. ++...+..+.++||.|.+.+..+.|+..|.+ +++..+|+..-...+-+.+-++=+ .-.|.|||++|
T Consensus 408 t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa~AG~--~gaVTIATNMA 485 (764)
T PRK12326 408 TAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEEARIIAEAGK--YGAVTVSTQMA 485 (764)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhHHHHHHhcCC--CCcEEEEecCC
Confidence 3445655444 4556677889999999999999999999995 788888988633222222223222 34689999999
Q ss_pred ccccCcC----------cc-----ceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhh
Q 012794 111 ARGLDIP----------NV-----DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 158 (456)
Q Consensus 111 ~~Gidip----------~v-----~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e 158 (456)
.||.||. .| -|||-...|.+...-.|-.||+||.|.+|.+..|++-.+
T Consensus 486 GRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 486 GRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred CCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 9999986 22 279999999999999999999999999999988887544
No 123
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.63 E-value=1.7e-07 Score=101.39 Aligned_cols=128 Identities=19% Similarity=0.250 Sum_probs=96.6
Q ss_pred eEEEEEcCcccHHHHHHHHHHHHCC--CCcEEEEcCChHHHHHHHHHHH-hcCCEEEEeCCCCHHHHHHHHhcccCCC--
Q 012794 26 KLYAISTTATSKRTILSDLITVYAK--GGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK-- 100 (456)
Q Consensus 26 ~~~~~~~~~~~k~~~L~~ll~~~~~--~~~~IIF~~t~~~a~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~-- 100 (456)
++.........|+..|..++..... ..++++..|.+...+.+..... .++.+..|||.|+..+|+.+++.|.+..
T Consensus 568 ~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~ 647 (776)
T KOG0390|consen 568 KLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESP 647 (776)
T ss_pred ccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCC
Confidence 3333334445678888888754421 1233333444544444444443 4789999999999999999999998743
Q ss_pred -eEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEe
Q 012794 101 -FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 153 (456)
Q Consensus 101 -~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~ 153 (456)
.-.|.+|.+.+.||++-..+.||.||++|++..-.|++.|+.|.|++-.|+++
T Consensus 648 ~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 648 SFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred ceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 23556788999999999999999999999999999999999999999888876
No 124
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.61 E-value=2.6e-07 Score=97.86 Aligned_cols=139 Identities=20% Similarity=0.350 Sum_probs=115.4
Q ss_pred cCcccHHHHHHHHHHHH-CCCCcEEEEcCChHHHHHHHHHHH-hcCCEEEEeCCCCHHHHHHHHhcccCCC---eEEEEe
Q 012794 32 TTATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK---FTVLVA 106 (456)
Q Consensus 32 ~~~~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~a~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~---~~vLVa 106 (456)
+...-|+.+|..||..+ ..+.++|||.......+-|..++. ++|...-|-|.++.++|...++.|.... +-.|++
T Consensus 467 v~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLS 546 (971)
T KOG0385|consen 467 VTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLS 546 (971)
T ss_pred HhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEe
Confidence 45567999999988765 567899999999999998888887 6788999999999999999999998643 557899
Q ss_pred ccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEe--eChh--hHHHHHHHHHHhC
Q 012794 107 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM--FTSS--QRRTVRSLERDVG 170 (456)
Q Consensus 107 Tdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~--~~~~--e~~~~~~ie~~~~ 170 (456)
|-+..-|||+...+.||.||..|++..-+|..-||+|.|++..+.+| ++.. |...+++.+.++.
T Consensus 547 TRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~ 614 (971)
T KOG0385|consen 547 TRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLR 614 (971)
T ss_pred ccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999977655544 5543 4455555555443
No 125
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=98.60 E-value=4.4e-08 Score=76.22 Aligned_cols=61 Identities=21% Similarity=0.401 Sum_probs=48.7
Q ss_pred EEEEEeecCccccCCCChhHHHHHHHhhCCCCCCccccEEEeecCccceeeeecCHHHHHHHHhhcCC
Q 012794 250 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 317 (456)
Q Consensus 250 ~t~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ig~i~~~~~~~~~~~~~dv~~~~a~~~~~~~~~ 317 (456)
++++++.|+ +++++|++|+++|++..++..++||+|+|.++| |+|+||+++++++++....
T Consensus 1 vrl~in~Gr---~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~----S~vev~~~~a~~v~~~l~~ 61 (74)
T PF03880_consen 1 VRLFINVGR---KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDNF----SFVEVPEEVAEKVLEALNG 61 (74)
T ss_dssp -EEEES-SG---GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-TT-HHHHHHHHTT
T ss_pred CEEEEEccc---ccCCCHHHHHHHHHhccCCCHHhEEEEEEeeeE----EEEEECHHHHHHHHHHhcC
Confidence 589999998 899999999999999999999999999999999 7999999999999987553
No 126
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.56 E-value=1.4e-06 Score=95.97 Aligned_cols=124 Identities=23% Similarity=0.300 Sum_probs=96.0
Q ss_pred cCcccHHHH-HHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCC-CeEEEEecc
Q 012794 32 TTATSKRTI-LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG-KFTVLVATD 108 (456)
Q Consensus 32 ~~~~~k~~~-L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g-~~~vLVaTd 108 (456)
.....|..+ +.+++..+..+.++||-|.+.+..+.|+..|.+ ++...+|+.. +.+++..+-+ ..| .-.|.|||+
T Consensus 548 ~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak--~~~~Ea~iia-~AG~~g~VTIATN 624 (970)
T PRK12899 548 MTEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAK--NHAQEAEIIA-GAGKLGAVTVATN 624 (970)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccc--hhhhHHHHHH-hcCCCCcEEEeec
Confidence 333456544 455667777788999999999999999999985 7888888886 3344433322 123 346899999
Q ss_pred ccccccCcC---ccc-----eEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhh
Q 012794 109 VAARGLDIP---NVD-----LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 158 (456)
Q Consensus 109 v~~~Gidip---~v~-----~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e 158 (456)
+|.||.||. .|. |||....|.+...--|-.||+||.|.+|.+..|++-.+
T Consensus 625 mAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlED 682 (970)
T PRK12899 625 MAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFED 682 (970)
T ss_pred cccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 999999984 222 79999999999999999999999999999988887554
No 127
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=98.53 E-value=4.7e-08 Score=54.14 Aligned_cols=17 Identities=59% Similarity=1.499 Sum_probs=16.1
Q ss_pred CcccCCCCCcCcCCCCC
Q 012794 440 ACFNCGKSGHRASECPN 456 (456)
Q Consensus 440 ~~~~c~~~gh~~~~~p~ 456 (456)
.||+|+++||+++|||+
T Consensus 2 ~C~~C~~~GH~~~~Cp~ 18 (18)
T PF00098_consen 2 KCFNCGEPGHIARDCPK 18 (18)
T ss_dssp BCTTTSCSSSCGCTSSS
T ss_pred cCcCCCCcCcccccCcc
Confidence 49999999999999996
No 128
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.48 E-value=9e-07 Score=97.81 Aligned_cols=119 Identities=21% Similarity=0.345 Sum_probs=102.2
Q ss_pred ccHHHHHHHHHHHHC---------------CCCcEEEEcCChHHHHHHHHHHHh-cC-CE--EEEeCCCCHHHHHHHHhc
Q 012794 35 TSKRTILSDLITVYA---------------KGGKTIVFTQTKRDADEVSLALTS-II-AS--EALHGDISQHQRERTLNG 95 (456)
Q Consensus 35 ~~k~~~L~~ll~~~~---------------~~~~~IIF~~t~~~a~~l~~~L~~-~~-~~--~~lhg~~~~~~R~~~l~~ 95 (456)
..|+.+|..||.... .+.++||||.-|..++.+.+.|.+ ++ .+ ..|-|.+++.+|.++.++
T Consensus 1309 spKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~ 1388 (1549)
T KOG0392|consen 1309 SPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVER 1388 (1549)
T ss_pred chhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHH
Confidence 468999999987541 246899999999999999988875 33 23 367899999999999999
Q ss_pred ccCC-CeEEE-EeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEe
Q 012794 96 FRQG-KFTVL-VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 153 (456)
Q Consensus 96 Fr~g-~~~vL-VaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~ 153 (456)
|.++ .++|| ++|.|..-|+|+...+.||.++-.|++-.-+|.+-||+|.|++.++-++
T Consensus 1389 FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVy 1448 (1549)
T KOG0392|consen 1389 FNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVY 1448 (1549)
T ss_pred hcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeee
Confidence 9998 78877 5778999999999999999999999999999999999999988766554
No 129
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.47 E-value=2.6e-06 Score=94.21 Aligned_cols=124 Identities=24% Similarity=0.287 Sum_probs=95.4
Q ss_pred CcccHHH-HHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecccc
Q 012794 33 TATSKRT-ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 110 (456)
Q Consensus 33 ~~~~k~~-~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~ 110 (456)
....|.. ++.++...+..+.++||-|.+.+..+.|+..|.. ++...+|+......+-+.+-++=+ .-.|-|||++|
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~--~GaVTIATNMA 686 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQ--PGTVTIATNMA 686 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCC--CCcEEEeccCc
Confidence 3345654 4455666777889999999999999999999984 787777777643333333334323 33588999999
Q ss_pred ccccCcC---cc-----ceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhh
Q 012794 111 ARGLDIP---NV-----DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 158 (456)
Q Consensus 111 ~~Gidip---~v-----~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e 158 (456)
.||.||. .| -+||-...+.|...--|-.||+||.|.+|.+..|++-.+
T Consensus 687 GRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 687 GRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred CCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 9999985 22 379999999999999999999999999999888876544
No 130
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.43 E-value=1e-06 Score=93.77 Aligned_cols=121 Identities=18% Similarity=0.347 Sum_probs=106.4
Q ss_pred CcccHHHHHHHHHHHH-CCCCcEEEEcCChHHHHHHHHHHH--hcCCEEEEeCCCCHHHHHHHHhcccCCC-eE-EEEec
Q 012794 33 TATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT--SIIASEALHGDISQHQRERTLNGFRQGK-FT-VLVAT 107 (456)
Q Consensus 33 ~~~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~a~~l~~~L~--~~~~~~~lhg~~~~~~R~~~l~~Fr~g~-~~-vLVaT 107 (456)
...-|+.+|..|+... ..+.++|+|..|+.+.+-|...|. ++|...-+.|..+.+.|..+++.|.++. +. .|++|
T Consensus 527 k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTT 606 (923)
T KOG0387|consen 527 KRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTT 606 (923)
T ss_pred hhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEe
Confidence 3456899999998765 456799999999999999999998 4899999999999999999999999764 33 57889
Q ss_pred cccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEe
Q 012794 108 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 153 (456)
Q Consensus 108 dv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~ 153 (456)
.|..-|+|+...+-||.||+.|++.+-.|..-|+.|.|++-.+++|
T Consensus 607 rvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 607 RVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred cccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEE
Confidence 9999999999999999999999999999999999999977655554
No 131
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.43 E-value=1.9e-06 Score=94.71 Aligned_cols=120 Identities=20% Similarity=0.339 Sum_probs=100.5
Q ss_pred cccHHHHHHHHHHHH-CCCCcEEEEcCChHHHHHHHHHHH-hcCCEEEEeCCCCHHHHHHHHhcccCCC--eEEEEeccc
Q 012794 34 ATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK--FTVLVATDV 109 (456)
Q Consensus 34 ~~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~a~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~--~~vLVaTdv 109 (456)
..-|++.|.-||..+ ..+.++|||+...++.+-|...|. .++...-|.|...-++|+..+++|.... +..|++|-.
T Consensus 1258 DcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrS 1337 (1958)
T KOG0391|consen 1258 DCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRS 1337 (1958)
T ss_pred ccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccC
Confidence 346788887777655 446799999999999999999998 4777888999999999999999998653 467788999
Q ss_pred cccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEe
Q 012794 110 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 153 (456)
Q Consensus 110 ~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~ 153 (456)
-..|||+-..+.||.||-.|++..-.|.--|+.|.|+...+.++
T Consensus 1338 ggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIY 1381 (1958)
T KOG0391|consen 1338 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 1381 (1958)
T ss_pred CccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEE
Confidence 99999999999999999999998888888888888866544444
No 132
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.40 E-value=4.5e-06 Score=91.78 Aligned_cols=124 Identities=25% Similarity=0.304 Sum_probs=94.4
Q ss_pred cCcccHHHHHH-HHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCC-CeEEEEecc
Q 012794 32 TTATSKRTILS-DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG-KFTVLVATD 108 (456)
Q Consensus 32 ~~~~~k~~~L~-~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g-~~~vLVaTd 108 (456)
.....|..++. ++...+..+.++||-|.|.+..+.|+..|.+ ++...+|+..-. +++..+-+ +.| .-.|.|||+
T Consensus 429 ~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~--~~EA~IIa-~AG~~GaVTIATN 505 (913)
T PRK13103 429 LTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH--EKEAEIIA-QAGRPGALTIATN 505 (913)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc--hhHHHHHH-cCCCCCcEEEecc
Confidence 34445655544 4556667789999999999999999999985 777777777633 34433322 223 346899999
Q ss_pred ccccccCcC--------------------------------cc-----ceEEecCCCCChhHHHHHhcccccCCCCceEE
Q 012794 109 VAARGLDIP--------------------------------NV-----DLIIHYELPNDPETFVHRSGRTGRAGKEGTAI 151 (456)
Q Consensus 109 v~~~Gidip--------------------------------~v-----~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i 151 (456)
+|.||.||. .| -|||-...|.+...--|-.||+||.|.+|.+-
T Consensus 506 MAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~ 585 (913)
T PRK13103 506 MAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSR 585 (913)
T ss_pred CCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceE
Confidence 999999984 12 27888999999999999999999999999998
Q ss_pred EeeChhh
Q 012794 152 LMFTSSQ 158 (456)
Q Consensus 152 ~~~~~~e 158 (456)
.|++-.+
T Consensus 586 f~lSlED 592 (913)
T PRK13103 586 FYLSLED 592 (913)
T ss_pred EEEEcCc
Confidence 8887543
No 133
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=98.36 E-value=1.4e-05 Score=84.03 Aligned_cols=67 Identities=22% Similarity=0.392 Sum_probs=51.4
Q ss_pred cEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----c-cccccCcCccce
Q 012794 53 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----V-AARGLDIPNVDL 121 (456)
Q Consensus 53 ~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v-~~~Gidip~v~~ 121 (456)
++||.|+|++.|.++.+.+.. .+.+..++|+++...+...+. +..+|||||+ . ....+++..+.+
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~IiV~TP~rL~~~~~~~~~~l~~v~~ 152 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLR----GGVDVLVATPGRLLDLEHQNAVKLDQVEI 152 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHc----CCCcEEEEChHHHHHHHHcCCcccccceE
Confidence 699999999999999988764 256778899998776554443 3679999995 2 234578888888
Q ss_pred EE
Q 012794 122 II 123 (456)
Q Consensus 122 VI 123 (456)
||
T Consensus 153 lV 154 (456)
T PRK10590 153 LV 154 (456)
T ss_pred EE
Confidence 77
No 134
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=3.8e-06 Score=89.41 Aligned_cols=108 Identities=20% Similarity=0.349 Sum_probs=75.4
Q ss_pred EEEEcCChHHHHHHHHHHHh------cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----ccccc-cCcCccce
Q 012794 54 TIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNVDL 121 (456)
Q Consensus 54 ~IIF~~t~~~a~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~~~G-idip~v~~ 121 (456)
+||+++|++.|.++++.+.. .+.+..++|+++...+...++. + .+|||||+ .+.++ +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 99999999999999998863 2568899999999888766666 4 99999995 67777 99999998
Q ss_pred EE--------ecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCC
Q 012794 122 II--------HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172 (456)
Q Consensus 122 VI--------~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~ 172 (456)
+| ++++..+++..+..+-. -..+++++.+-...+..+.+.+-.+
T Consensus 178 lVlDEADrmLd~Gf~~~i~~I~~~~p~-------~~qtllfSAT~~~~i~~l~~~~l~~ 229 (513)
T COG0513 178 LVLDEADRMLDMGFIDDIEKILKALPP-------DRQTLLFSATMPDDIRELARRYLND 229 (513)
T ss_pred EEeccHhhhhcCCCHHHHHHHHHhCCc-------ccEEEEEecCCCHHHHHHHHHHccC
Confidence 88 45555566655555532 3344444433222455554444333
No 135
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.24 E-value=1.7e-06 Score=96.31 Aligned_cols=105 Identities=25% Similarity=0.421 Sum_probs=87.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhc-----------------------------C-------------CEEEEeCCCCHHH
Q 012794 51 GGKTIVFTQTKRDADEVSLALTSI-----------------------------I-------------ASEALHGDISQHQ 88 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~~-----------------------------~-------------~~~~lhg~~~~~~ 88 (456)
.-++|+|+-++..|+..+..+... + .+.++|++|-+..
T Consensus 379 ~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~ 458 (1041)
T COG4581 379 LLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAI 458 (1041)
T ss_pred CCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHH
Confidence 468999999999999988776410 0 2457899999999
Q ss_pred HHHHHhcccCCCeEEEEeccccccccCcCccceEE----ecC----CCCChhHHHHHhcccccCC--CCceEEEeeC
Q 012794 89 RERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII----HYE----LPNDPETFVHRSGRTGRAG--KEGTAILMFT 155 (456)
Q Consensus 89 R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI----~~~----~p~~~~~y~qr~GR~gR~g--~~g~~i~~~~ 155 (456)
++.+...|..|.++||+||.+.+.|||+|.-++|+ .+| -+.++..|+|+.||+||.| ..|.+|++-.
T Consensus 459 K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 459 KELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred HHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 99999999999999999999999999999988877 222 3457899999999999988 4577777743
No 136
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.16 E-value=1.8e-05 Score=78.39 Aligned_cols=249 Identities=16% Similarity=0.193 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc----
Q 012794 38 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD---- 108 (456)
Q Consensus 38 ~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd---- 108 (456)
+++|..|+... +.-.++|.++|++.|.++++.+.. ++.+.+|-|+|....+...+.+ +..|||||+
T Consensus 117 LPIl~~LL~~p-~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~k----kPhilVaTPGrL~ 191 (476)
T KOG0330|consen 117 LPILQRLLQEP-KLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSK----KPHILVATPGRLW 191 (476)
T ss_pred HHHHHHHHcCC-CCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhc----CCCEEEeCcHHHH
Confidence 56666666532 336799999999999999988863 3679999999988766655544 678899996
Q ss_pred -cc--ccccCcCccceEE--------ecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCceecC
Q 012794 109 -VA--ARGLDIPNVDLII--------HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 177 (456)
Q Consensus 109 -v~--~~Gidip~v~~VI--------~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~~~ 177 (456)
.+ ..|+.+..+.++| +.|+-..++.++-.+- ...-.++++.+-...+.+|.+..-..+..+.
T Consensus 192 dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip-------~erqt~LfsATMt~kv~kL~rasl~~p~~v~ 264 (476)
T KOG0330|consen 192 DHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIP-------RERQTFLFSATMTKKVRKLQRASLDNPVKVA 264 (476)
T ss_pred HHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcC-------ccceEEEEEeecchhhHHHHhhccCCCeEEe
Confidence 22 3667776666544 6777777777777774 3344555555555666777665555555554
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCcchhhhhH-HHHHHHHh--------hcCHHHHHHHHHHHhCCCCCCC---------C
Q 012794 178 PPVVEDVLESSAEQVVATLNGVHPESVEFFT-PTAQRLIE--------EKGTDALAAALAQLSGFSRPPS---------S 239 (456)
Q Consensus 178 ~p~~~~i~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~ll~--------~~~~~~~a~ala~~~~~~~~~~---------~ 239 (456)
.++.-..+ ..+.+....+.....+.|. .++.++.. ........+.+...+|+...+- .
T Consensus 265 ~s~ky~tv----~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rl 340 (476)
T KOG0330|consen 265 VSSKYQTV----DHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRL 340 (476)
T ss_pred ccchhcch----HHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHH
Confidence 44433322 2222222222222222221 12222211 1223445555555556543221 1
Q ss_pred ccccCCCCceEEEEEeecCccccCCCChhHHHHHHHhhCCCCCCccccEEEeecCccceeeeecCHHHHHHHHhhcC--C
Q 012794 240 RSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQI--P 317 (456)
Q Consensus 240 r~l~~~~~g~~t~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ig~i~~~~~~~~~~~~~dv~~~~a~~~~~~~~--~ 317 (456)
-++...+.+...+++.+|.+ ...-||..++++.||+ +.--..+|.+++.+... .
T Consensus 341 g~l~~Fk~~~r~iLv~TDVa--------------------SRGLDip~Vd~VVNyD----iP~~skDYIHRvGRtaRaGr 396 (476)
T KOG0330|consen 341 GALNKFKAGARSILVCTDVA--------------------SRGLDIPHVDVVVNYD----IPTHSKDYIHRVGRTARAGR 396 (476)
T ss_pred HHHHHHhccCCcEEEecchh--------------------cccCCCCCceEEEecC----CCCcHHHHHHHcccccccCC
Confidence 12223455555666666542 2345788888888764 44444666677665433 2
Q ss_pred CCCceeecc
Q 012794 318 PGNTISKIT 326 (456)
Q Consensus 318 ~g~~l~~~t 326 (456)
+|..++.+|
T Consensus 397 sG~~ItlVt 405 (476)
T KOG0330|consen 397 SGKAITLVT 405 (476)
T ss_pred CcceEEEEe
Confidence 455555543
No 137
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.16 E-value=2.1e-05 Score=80.23 Aligned_cols=113 Identities=12% Similarity=0.177 Sum_probs=78.6
Q ss_pred cEEEEcCChHHHHHHHHHHH---h--cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc------ccccccCcCccce
Q 012794 53 KTIVFTQTKRDADEVSLALT---S--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVDL 121 (456)
Q Consensus 53 ~~IIF~~t~~~a~~l~~~L~---~--~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd------v~~~Gidip~v~~ 121 (456)
-.||.|+|++.|.+|....+ + ++.++++||+++.-++.+.|+. ...|+|||+ |--.++|+..|.+
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~----g~EivVaTPgRlid~VkmKatn~~rvS~ 373 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKE----GAEIVVATPGRLIDMVKMKATNLSRVSY 373 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhc----CCeEEEechHHHHHHHHhhcccceeeeE
Confidence 35788999999998865544 3 3779999999999999988884 778999996 3445699999998
Q ss_pred EE--------ecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCcee
Q 012794 122 II--------HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 175 (456)
Q Consensus 122 VI--------~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~ 175 (456)
+| ++++-..+.++.|.+ | ....|++|.........+.....+.-++..
T Consensus 374 LV~DEadrmfdmGfe~qVrSI~~hi----r--pdrQtllFsaTf~~kIe~lard~L~dpVrv 429 (731)
T KOG0339|consen 374 LVLDEADRMFDMGFEPQVRSIKQHI----R--PDRQTLLFSATFKKKIEKLARDILSDPVRV 429 (731)
T ss_pred EEEechhhhhccccHHHHHHHHhhc----C--CcceEEEeeccchHHHHHHHHHHhcCCeeE
Confidence 77 344455677777777 1 234555555554544444444555544443
No 138
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.15 E-value=2.1e-05 Score=80.34 Aligned_cols=125 Identities=14% Similarity=0.209 Sum_probs=84.8
Q ss_pred HHHHHHHHHHH--CCCCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc--
Q 012794 38 RTILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-- 108 (456)
Q Consensus 38 ~~~L~~ll~~~--~~~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-- 108 (456)
+++|.+||-.- ..-.++||.|+|++.+.+++....+ .+.+...-|+|+-.+++.+|.. ..+|+|||+
T Consensus 237 lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs----~PDIVIATPGR 312 (691)
T KOG0338|consen 237 LPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRS----RPDIVIATPGR 312 (691)
T ss_pred HHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhh----CCCEEEecchh
Confidence 45556655221 1235899999999999988776653 2556667799999999999988 788999996
Q ss_pred -----ccccccCcCccceEEecCCC--------CChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCc
Q 012794 109 -----VAARGLDIPNVDLIIHYELP--------NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173 (456)
Q Consensus 109 -----v~~~Gidip~v~~VI~~~~p--------~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~ 173 (456)
--..+.|+.++.++|.-... .....+++.+ .+....++++.+-...++.|....-.+.
T Consensus 313 lIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lc-------pk~RQTmLFSATMteeVkdL~slSL~kP 383 (691)
T KOG0338|consen 313 LIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLC-------PKNRQTMLFSATMTEEVKDLASLSLNKP 383 (691)
T ss_pred HHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhc-------cccccceeehhhhHHHHHHHHHhhcCCC
Confidence 23456888888887753332 3344456655 3455667777766677777766643333
No 139
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.15 E-value=4.4e-05 Score=83.83 Aligned_cols=85 Identities=22% Similarity=0.258 Sum_probs=60.7
Q ss_pred CcccHHH-HHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecccc
Q 012794 33 TATSKRT-ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 110 (456)
Q Consensus 33 ~~~~k~~-~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~ 110 (456)
....|.. ++.++...+..+.++||-|.|.+..+.|+..|.. +++..+|++.-.+.+++..+-+=.-..-.|.|||++|
T Consensus 405 t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~AG~~G~VTIATNMA 484 (870)
T CHL00122 405 DELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQAGRKGSITIATNMA 484 (870)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhcCCCCcEEEecccc
Confidence 3334544 5556677778889999999999999999999985 7888899986323233332222122234689999999
Q ss_pred ccccCcC
Q 012794 111 ARGLDIP 117 (456)
Q Consensus 111 ~~Gidip 117 (456)
.||.||-
T Consensus 485 GRGTDI~ 491 (870)
T CHL00122 485 GRGTDII 491 (870)
T ss_pred CCCcCee
Confidence 9998873
No 140
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.09 E-value=2.6e-05 Score=88.15 Aligned_cols=120 Identities=19% Similarity=0.287 Sum_probs=103.6
Q ss_pred cHHHHHHHHH-HH-HCCCC--cEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCC--CeEEEEecc
Q 012794 36 SKRTILSDLI-TV-YAKGG--KTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG--KFTVLVATD 108 (456)
Q Consensus 36 ~k~~~L~~ll-~~-~~~~~--~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g--~~~vLVaTd 108 (456)
.|...+.+++ .. ..... ++|||+......+.+...|.. .+....++|.++.+.|..+++.|.++ ..-+|++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 6888888888 33 33445 899999999999999999986 46899999999999999999999985 445667788
Q ss_pred ccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeC
Q 012794 109 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 155 (456)
Q Consensus 109 v~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~ 155 (456)
+...|+|+...++||+||+.|++....|...|+.|.|++..+.++-.
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~ 818 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRL 818 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEe
Confidence 99999999999999999999999999999999999998776665543
No 141
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.09 E-value=2e-05 Score=80.18 Aligned_cols=122 Identities=18% Similarity=0.242 Sum_probs=99.2
Q ss_pred ccHHHHHHHHHHHH---CCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCC-CeEEE-Eecc
Q 012794 35 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG-KFTVL-VATD 108 (456)
Q Consensus 35 ~~k~~~L~~ll~~~---~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g-~~~vL-VaTd 108 (456)
+.|+++|.+-|... ...-+.|||.......+.+.-.|.+ ++.|+-|.|.|++++|..+++.|++. .+.|+ |+-.
T Consensus 619 STKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLk 698 (791)
T KOG1002|consen 619 STKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLK 698 (791)
T ss_pred hhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEec
Confidence 45777777655433 2335899999999999999999985 89999999999999999999999986 45554 5556
Q ss_pred ccccccCcCccceEEecCCCCChhHHHHHhcccccCCC--CceEEEeeCh
Q 012794 109 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK--EGTAILMFTS 156 (456)
Q Consensus 109 v~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~--~g~~i~~~~~ 156 (456)
+....+|+....+|+.+|+-|++..-.|.--|..|.|+ +-.++.|+.+
T Consensus 699 AGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iE 748 (791)
T KOG1002|consen 699 AGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIE 748 (791)
T ss_pred cCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehh
Confidence 77777999999999999999999999999999999884 4456666554
No 142
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=98.07 E-value=1.8e-05 Score=83.50 Aligned_cols=119 Identities=18% Similarity=0.313 Sum_probs=104.9
Q ss_pred ccHHHHHHHHHHHH-CCCCcEEEEcCChHHHHHHHHHHH-hcCCEEEEeCCCCHHHHHHHHhcccCCCe-EEEEeccccc
Q 012794 35 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKF-TVLVATDVAA 111 (456)
Q Consensus 35 ~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~a~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~-~vLVaTdv~~ 111 (456)
+.|+..|..||..+ ..+.++|+|....++.+.+.++|. +++...-|.|...-..|..++..|+...+ -.|++|-+..
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 46888888888766 446799999999999999999998 57888999999999999999999998654 5678999999
Q ss_pred cccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEe
Q 012794 112 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 153 (456)
Q Consensus 112 ~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~ 153 (456)
-|||+...+.||.||..|++..-.|..-|+.|.|++..+.++
T Consensus 1107 LGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvy 1148 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVY 1148 (1185)
T ss_pred ccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeee
Confidence 999999999999999999999999999999999977655444
No 143
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.06 E-value=3.8e-05 Score=78.38 Aligned_cols=110 Identities=24% Similarity=0.337 Sum_probs=90.2
Q ss_pred cCcccHHHHHHHHHHHHC-CCCcEEEEcCChHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHhcccC-CCeEEEEeccc
Q 012794 32 TTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQ-GKFTVLVATDV 109 (456)
Q Consensus 32 ~~~~~k~~~L~~ll~~~~-~~~~~IIF~~t~~~a~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~-g~~~vLVaTdv 109 (456)
+-...|..+..-||+.+. .+.++|||....-...+.|-.|.+ ..|+|..+|.+|.++|+.|+- ..++-++-+.|
T Consensus 523 vMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKV 598 (776)
T KOG1123|consen 523 VMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK----PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKV 598 (776)
T ss_pred ecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC----ceEECCCchhHHHHHHHhcccCCccceEEEeec
Confidence 334457777777887664 467999999988777777666643 468999999999999999985 47888999999
Q ss_pred cccccCcCccceEEecCCCC-ChhHHHHHhcccccCC
Q 012794 110 AARGLDIPNVDLIIHYELPN-DPETFVHRSGRTGRAG 145 (456)
Q Consensus 110 ~~~Gidip~v~~VI~~~~p~-~~~~y~qr~GR~gR~g 145 (456)
....||+|..+++|+..... +..+-.||.||.-|+.
T Consensus 599 gDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 599 GDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred cCccccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 99999999999999876554 6788899999999975
No 144
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.03 E-value=4.3e-05 Score=86.32 Aligned_cols=106 Identities=20% Similarity=0.244 Sum_probs=77.2
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhc---CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccc--eEEe
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD--LIIH 124 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~~---~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~--~VI~ 124 (456)
..+++|||+++.+..+.++..|... .....+..+.. ..|.++++.|++++..||++|+.+.+|||+|... +||.
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI 751 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVI 751 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEE
Confidence 3578999999999999999998741 12233433333 5789999999999999999999999999999776 4666
Q ss_pred cCCCCC------------------------------hhHHHHHhcccccCCCCceEEEeeCh
Q 012794 125 YELPND------------------------------PETFVHRSGRTGRAGKEGTAILMFTS 156 (456)
Q Consensus 125 ~~~p~~------------------------------~~~y~qr~GR~gR~g~~g~~i~~~~~ 156 (456)
..+|.. ...+.|.+||.=|.....-+++++..
T Consensus 752 ~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~ 813 (850)
T TIGR01407 752 PRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDR 813 (850)
T ss_pred eCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEcc
Confidence 666532 12247889999887644334444443
No 145
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.03 E-value=1.6e-05 Score=86.56 Aligned_cols=83 Identities=28% Similarity=0.456 Sum_probs=71.5
Q ss_pred CEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEecC-CCCChhHHHHHhcccccCC--CCceEEE
Q 012794 76 ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE-LPNDPETFVHRSGRTGRAG--KEGTAIL 152 (456)
Q Consensus 76 ~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~-~p~~~~~y~qr~GR~gR~g--~~g~~i~ 152 (456)
.+.++|++|....|..+.--||.|...||+||..++-|||+|.-++|+--| +--++-.|.|++|||||-| -.|.++.
T Consensus 964 GiG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~F 1043 (1330)
T KOG0949|consen 964 GIGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVF 1043 (1330)
T ss_pred cccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEE
Confidence 366789999999999999999999999999999999999999888887666 4568999999999999988 4577666
Q ss_pred eeChhh
Q 012794 153 MFTSSQ 158 (456)
Q Consensus 153 ~~~~~e 158 (456)
+--|..
T Consensus 1044 mgiP~~ 1049 (1330)
T KOG0949|consen 1044 MGIPRQ 1049 (1330)
T ss_pred EeCcHH
Confidence 655543
No 146
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.01 E-value=4.4e-05 Score=81.69 Aligned_cols=123 Identities=20% Similarity=0.326 Sum_probs=104.0
Q ss_pred ccHHHHHHHHHHHHC-CCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCC-e-EEEEecccc
Q 012794 35 TSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK-F-TVLVATDVA 110 (456)
Q Consensus 35 ~~k~~~L~~ll~~~~-~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~-~-~vLVaTdv~ 110 (456)
+.|...|..||.... ++.++|||.......+-|...|.. .+...-|-|...-..|+.+++.|-..+ + -+|++|.+.
T Consensus 760 SgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAG 839 (941)
T KOG0389|consen 760 SGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAG 839 (941)
T ss_pred hhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccC
Confidence 468888999887763 457999999999999888888874 678888999999999999999998653 4 467899999
Q ss_pred ccccCcCccceEEecCCCCChhHHHHHhcccccCCCCc--eEEEeeChh
Q 012794 111 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEG--TAILMFTSS 157 (456)
Q Consensus 111 ~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g--~~i~~~~~~ 157 (456)
..|||+...++||.+|+..++-.-.|.--|++|.|++- +++-|++..
T Consensus 840 G~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~ 888 (941)
T KOG0389|consen 840 GFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKS 888 (941)
T ss_pred cceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecC
Confidence 99999999999999999999999999999999999664 444455543
No 147
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.98 E-value=3.7e-05 Score=83.06 Aligned_cols=92 Identities=25% Similarity=0.366 Sum_probs=76.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcC------CEEEEeCCCCHHHHHHHHhcccC--CCeEEEEeccccccccCcCccceE
Q 012794 51 GGKTIVFTQTKRDADEVSLALTSII------ASEALHGDISQHQRERTLNGFRQ--GKFTVLVATDVAARGLDIPNVDLI 122 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~~~------~~~~lhg~~~~~~R~~~l~~Fr~--g~~~vLVaTdv~~~Gidip~v~~V 122 (456)
-.|+||||.+..+|+.+...|.+.+ -+..+.++-.+.++ .++.|.. .-.+|.|+.|++..|||+|.|..+
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q~--~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nl 503 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQA--LIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNL 503 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhHH--HHHHHHhcCCCCceEEehhhhhcCCCchheeee
Confidence 3699999999999999999998532 37778888665543 3555544 345788999999999999999999
Q ss_pred EecCCCCChhHHHHHhcccccC
Q 012794 123 IHYELPNDPETFVHRSGRTGRA 144 (456)
Q Consensus 123 I~~~~p~~~~~y~qr~GR~gR~ 144 (456)
|.+-.-.|...|.|++||.-|.
T Consensus 504 VF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 504 VFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred eehhhhhhHHHHHHHhcCcccc
Confidence 9999999999999999999994
No 148
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.93 E-value=0.00013 Score=80.28 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=73.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhc------CCEEEEeCCCCHH---------------------HHHHHHhcccC-CCeE
Q 012794 51 GGKTIVFTQTKRDADEVSLALTSI------IASEALHGDISQH---------------------QRERTLNGFRQ-GKFT 102 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~~------~~~~~lhg~~~~~---------------------~R~~~l~~Fr~-g~~~ 102 (456)
..+++|||.++..|..+++.|.+. ..++++++..... ..+.++++|++ +.++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 479999999999999999888643 2345566543322 22478889986 5789
Q ss_pred EEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccC
Q 012794 103 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 144 (456)
Q Consensus 103 vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~ 144 (456)
|||++|++-.|+|.|.+++++..-+-.+. .++|.+||+-|.
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRI 634 (667)
T ss_pred EEEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccc
Confidence 99999999999999999998877766655 589999999993
No 149
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.89 E-value=3.5e-05 Score=83.97 Aligned_cols=102 Identities=25% Similarity=0.458 Sum_probs=78.2
Q ss_pred HHHHHHHHHh---cCCEEEEeCCCCHHH--HHHHHhcccCCCeEEEEeccccccccCcCccceEE--ecCC----CC---
Q 012794 64 ADEVSLALTS---IIASEALHGDISQHQ--RERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII--HYEL----PN--- 129 (456)
Q Consensus 64 a~~l~~~L~~---~~~~~~lhg~~~~~~--R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI--~~~~----p~--- 129 (456)
++.+++.|.+ ...++.+-+|.+... -+..+..|.+|+++|||.|.+++.|.|+|++++|. +.|. |+
T Consensus 493 terieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA 572 (730)
T COG1198 493 TERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRA 572 (730)
T ss_pred HHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcch
Confidence 4555555554 346777888766543 56789999999999999999999999999999866 4332 21
Q ss_pred ---ChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHH
Q 012794 130 ---DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165 (456)
Q Consensus 130 ---~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~i 165 (456)
....+.|-+||+||.+++|.+++-....+...++.+
T Consensus 573 ~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~ 611 (730)
T COG1198 573 SERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQAL 611 (730)
T ss_pred HHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHH
Confidence 356679999999999999999888776666666555
No 150
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.88 E-value=0.00029 Score=77.55 Aligned_cols=85 Identities=24% Similarity=0.245 Sum_probs=60.4
Q ss_pred CcccHHHHHH-HHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecccc
Q 012794 33 TATSKRTILS-DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 110 (456)
Q Consensus 33 ~~~~k~~~L~-~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~ 110 (456)
....|..++. ++...+..+.++||-|.|.+..+.|+..|.+ ++...+|+..-.+.+++..+-+=.-..-.|-|||++|
T Consensus 420 t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~AG~~GaVTIATNMA 499 (939)
T PRK12902 420 TEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQAGRKGAVTIATNMA 499 (939)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhcCCCCcEEEeccCC
Confidence 3345655544 5666677889999999999999999999995 7888889886333333333222111133589999999
Q ss_pred ccccCcC
Q 012794 111 ARGLDIP 117 (456)
Q Consensus 111 ~~Gidip 117 (456)
.||.||.
T Consensus 500 GRGTDIk 506 (939)
T PRK12902 500 GRGTDII 506 (939)
T ss_pred CCCcCEe
Confidence 9998874
No 151
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.83 E-value=8.9e-05 Score=81.20 Aligned_cols=161 Identities=17% Similarity=0.237 Sum_probs=120.7
Q ss_pred cccHHHHHHHHHHHH-CCCCcEEEEcCChHHHHHHHHHHH-hcCCEEEEeCCCCHHHHHHHHhcccCCC---eEEEEecc
Q 012794 34 ATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK---FTVLVATD 108 (456)
Q Consensus 34 ~~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~a~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~---~~vLVaTd 108 (456)
..-|+++|.++|-.+ ..+.++|.||......+-+..+|. +.+...-|-|.....+|-..++.|..-. +.+|..|-
T Consensus 708 ~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstr 787 (1157)
T KOG0386|consen 708 VSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTR 787 (1157)
T ss_pred hccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeec
Confidence 357899999988766 447899999999988888888887 5677788899999999999999998754 45788999
Q ss_pred ccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChh----hHHHHHHHHHHhCCC-----ceecCCC
Q 012794 109 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS----QRRTVRSLERDVGCK-----FEFVSPP 179 (456)
Q Consensus 109 v~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~----e~~~~~~ie~~~~~~-----~~~~~~p 179 (456)
....|+|+.-++.||.||..|++....|+--|+.|.|+.-.+-++.... +..++.....+++.. ......-
T Consensus 788 agglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviqag~fdn~ 867 (1157)
T KOG0386|consen 788 AGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQAGKFDNK 867 (1157)
T ss_pred ccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhhcccccCC
Confidence 9999999999999999999999999999999999999776655554433 223333322223222 2223334
Q ss_pred CHHHHHHHHHHHHHH
Q 012794 180 VVEDVLESSAEQVVA 194 (456)
Q Consensus 180 ~~~~i~~~~~~~~~~ 194 (456)
+..+-.+..++.++.
T Consensus 868 st~~eR~~~Le~~l~ 882 (1157)
T KOG0386|consen 868 STAEEREMFLEQLLE 882 (1157)
T ss_pred CcHHHHHHHHHHHHh
Confidence 445555555555554
No 152
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=97.78 E-value=0.00012 Score=74.78 Aligned_cols=119 Identities=18% Similarity=0.359 Sum_probs=98.1
Q ss_pred cHHHHHHHHHHH-----HCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCC-CeEE-EEec
Q 012794 36 SKRTILSDLITV-----YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG-KFTV-LVAT 107 (456)
Q Consensus 36 ~k~~~L~~ll~~-----~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g-~~~v-LVaT 107 (456)
.|+..+.+.|.. ..+..|.+|||.-....+.+...+.+ ++..+-+-|..+...|....+.|+.. ++.| +++-
T Consensus 472 aK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsI 551 (689)
T KOG1000|consen 472 AKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSI 551 (689)
T ss_pred cccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEE
Confidence 455555555544 13467999999999999999999984 78889999999999999999999864 4554 3455
Q ss_pred cccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEee
Q 012794 108 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMF 154 (456)
Q Consensus 108 dv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~ 154 (456)
.++..||++...+.||...+++++-.++|.--|++|.|++..+.++|
T Consensus 552 tA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 552 TAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred eecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEE
Confidence 78899999999999999999999999999999999999876554443
No 153
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.78 E-value=9.3e-05 Score=66.95 Aligned_cols=104 Identities=24% Similarity=0.406 Sum_probs=70.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcC---CEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc--ccccccCcCc--cceEE
Q 012794 51 GGKTIVFTQTKRDADEVSLALTSII---ASEALHGDISQHQRERTLNGFRQGKFTVLVATD--VAARGLDIPN--VDLII 123 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~~~---~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd--v~~~Gidip~--v~~VI 123 (456)
++.+|||+++.+..+.+...+.... ...++.- .......+++.|+++.-.||+++. .+.+|||+|+ +..||
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 5899999999999999999887532 1222332 355788999999999999999998 9999999995 66799
Q ss_pred ecCCCC----Ch--------------------------hHHHHHhcccccCCCCceEEEeeCh
Q 012794 124 HYELPN----DP--------------------------ETFVHRSGRTGRAGKEGTAILMFTS 156 (456)
Q Consensus 124 ~~~~p~----~~--------------------------~~y~qr~GR~gR~g~~g~~i~~~~~ 156 (456)
...+|. |+ ....|.+||+=|....--+++++..
T Consensus 87 i~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 87 IVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 888774 11 1237889999997655444444443
No 154
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.49 E-value=0.014 Score=63.17 Aligned_cols=68 Identities=10% Similarity=0.199 Sum_probs=52.7
Q ss_pred CcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----cccc--ccCcCcc
Q 012794 52 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR--GLDIPNV 119 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~~~--Gidip~v 119 (456)
.++||.++|++.|.++++.+.. .+.+..+||+.+...+...++. ..+|||+|+ .+.. .+++..+
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~----~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQ----GVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhC----CCCEEEECHHHHHHHHHhccccchhhe
Confidence 5799999999999999887764 2568899999998877766653 678999995 3332 3667777
Q ss_pred ceEE
Q 012794 120 DLII 123 (456)
Q Consensus 120 ~~VI 123 (456)
.+||
T Consensus 161 ~~lV 164 (572)
T PRK04537 161 EICV 164 (572)
T ss_pred eeeE
Confidence 7766
No 155
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.38 E-value=0.0033 Score=65.04 Aligned_cols=146 Identities=13% Similarity=0.200 Sum_probs=108.4
Q ss_pred ccccCeeEEEEEcCcc-------cHHHHHHH-HHHHHC---CCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHH
Q 012794 20 KLAEGIKLYAISTTAT-------SKRTILSD-LITVYA---KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQH 87 (456)
Q Consensus 20 ~~~~~i~~~~~~~~~~-------~k~~~L~~-ll~~~~---~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~ 87 (456)
.....|.|.+...+.. .+.+.... ++..+. ....+|||+++--+=-.|-..|++ .+....+|--.++.
T Consensus 258 ~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~ 337 (442)
T PF06862_consen 258 QVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNS 337 (442)
T ss_pred ccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHH
Confidence 3445667776654332 23333332 332222 357899999999888889899985 68888999999999
Q ss_pred HHHHHHhcccCCCeEEEEecc--ccccccCcCccceEEecCCCCChhHHHHHhcccccCCC------CceEEEeeChhhH
Q 012794 88 QRERTLNGFRQGKFTVLVATD--VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK------EGTAILMFTSSQR 159 (456)
Q Consensus 88 ~R~~~l~~Fr~g~~~vLVaTd--v~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~------~g~~i~~~~~~e~ 159 (456)
+-.++-..|.+|+.+||+.|. ..-+=..|..+.+||.|.+|..+.-|...+.-...... ...|.++++..+.
T Consensus 338 ~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~ 417 (442)
T PF06862_consen 338 DISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDA 417 (442)
T ss_pred HHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHH
Confidence 999999999999999999996 33344667789999999999999999887765554332 5789999998876
Q ss_pred HHHHHH
Q 012794 160 RTVRSL 165 (456)
Q Consensus 160 ~~~~~i 165 (456)
-.++.|
T Consensus 418 ~~LErI 423 (442)
T PF06862_consen 418 LRLERI 423 (442)
T ss_pred HHHHHH
Confidence 655544
No 156
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=97.31 E-value=0.0019 Score=70.64 Aligned_cols=122 Identities=17% Similarity=0.226 Sum_probs=101.4
Q ss_pred CcccHHHHHHHHHHHH-CCCCcEEEEcCChHHHHHHHHHHHh----c-------------------CCEEEEeCCCCHHH
Q 012794 33 TATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS----I-------------------IASEALHGDISQHQ 88 (456)
Q Consensus 33 ~~~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~a~~l~~~L~~----~-------------------~~~~~lhg~~~~~~ 88 (456)
..+.|+-+|.+||... .-+.++|||..+....+.|...|.- + .....|-|..+..+
T Consensus 1123 ~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~ 1202 (1567)
T KOG1015|consen 1123 EHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQS 1202 (1567)
T ss_pred hcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHH
Confidence 3457888899988755 3467999999999988888777751 1 12456778899999
Q ss_pred HHHHHhcccCCC----eEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEee
Q 012794 89 RERTLNGFRQGK----FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMF 154 (456)
Q Consensus 89 R~~~l~~Fr~g~----~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~ 154 (456)
|+++.+.|.+-. .-.||+|-+..-|||+-..+.||.||..|++..-+|.+=|+.|.|+.--||++-
T Consensus 1203 R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYR 1272 (1567)
T KOG1015|consen 1203 RKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYR 1272 (1567)
T ss_pred HHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehh
Confidence 999999998642 247899999999999999999999999999999999999999999888877763
No 157
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.29 E-value=0.0019 Score=70.90 Aligned_cols=122 Identities=24% Similarity=0.262 Sum_probs=87.8
Q ss_pred ccH-HHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecccccc
Q 012794 35 TSK-RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112 (456)
Q Consensus 35 ~~k-~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~ 112 (456)
..| .+++.++...+.++.++||-+.+.+..+.+.+.|.+ +++..+|...-. .|+..+-++.-..-.|-|||++|.|
T Consensus 412 ~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~AG~~gaVTiATNMAGR 489 (822)
T COG0653 412 EEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQAGQPGAVTIATNMAGR 489 (822)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhcCCCCccccccccccC
Confidence 345 445556666778899999999999999999999985 777777777644 4444444433223357899999999
Q ss_pred ccCcCccc-----------eEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhh
Q 012794 113 GLDIPNVD-----------LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 158 (456)
Q Consensus 113 Gidip~v~-----------~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e 158 (456)
|.||.--. +||-..--.+..---|--||+||.|-+|.+..|++-.+
T Consensus 490 GTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 490 GTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred CcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 99984221 45655555666666799999999998888777665433
No 158
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=97.26 E-value=0.002 Score=72.47 Aligned_cols=157 Identities=15% Similarity=0.219 Sum_probs=105.4
Q ss_pred ccccCCCccccCCcccccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHhc---------
Q 012794 4 YFVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI--------- 74 (456)
Q Consensus 4 ~l~~~~~i~~v~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~--------- 74 (456)
.||+.+.+..++...+...-++.|+........| ..+..+.......+++|||+++++.|..+|..|...
T Consensus 1313 v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~-~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l 1391 (1674)
T KOG0951|consen 1313 VFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTK-PTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYL 1391 (1674)
T ss_pred eeecCcccCCCceeEEEEEeccchhHHHHHHhhh-hHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHH
Confidence 4556666666655554444444443322222222 123344444456789999999999999988665321
Q ss_pred --------------CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEE----ecC------CCCC
Q 012794 75 --------------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII----HYE------LPND 130 (456)
Q Consensus 75 --------------~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI----~~~------~p~~ 130 (456)
+...+=|-+|+...++.+-+-|..|.++|+|...- -.|+-...--+|| .|| .+.+
T Consensus 1392 ~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~ 1470 (1674)
T KOG0951|consen 1392 LSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYP 1470 (1674)
T ss_pred HHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEecceeecccccccccCc
Confidence 12222278899999999999999999999998755 6676654333333 233 5667
Q ss_pred hhHHHHHhcccccCCCCceEEEeeChhhHHHHHHH
Q 012794 131 PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165 (456)
Q Consensus 131 ~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~i 165 (456)
+....|+.|+|.| .+.|++++....+.+++++
T Consensus 1471 i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1471 IAELLQMVGLASG---AGKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred hhHHHHHhhhhcC---CccEEEEecCchHHHHHHh
Confidence 8999999999988 6789999998888887765
No 159
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.25 E-value=0.0026 Score=62.83 Aligned_cols=54 Identities=20% Similarity=0.212 Sum_probs=45.2
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
+.-++||++|++.|-++++.|.. .+++.++.|+|+.-.+...|.+ .-.|+|||+
T Consensus 75 giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~----rPHvVvatP 133 (442)
T KOG0340|consen 75 GIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSD----RPHVVVATP 133 (442)
T ss_pred cceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhccc----CCCeEecCc
Confidence 34689999999999999999872 3689999999988777777666 778999995
No 160
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.19 E-value=0.0036 Score=71.44 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=81.0
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcCC---EEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCc--cceEEe
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTSIIA---SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN--VDLIIH 124 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~~~~---~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~--v~~VI~ 124 (456)
..+++|||+++.+..++++..|..... ...+.=+++...|.++++.|+++.-.||++|....+|||+|. +.+||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 457999999999999999999974321 222222344456789999999888889999999999999995 467887
Q ss_pred cCCCC----C--------------------------hhHHHHHhcccccCCCCceEEEeeChh--hHHHHHHHHHH
Q 012794 125 YELPN----D--------------------------PETFVHRSGRTGRAGKEGTAILMFTSS--QRRTVRSLERD 168 (456)
Q Consensus 125 ~~~p~----~--------------------------~~~y~qr~GR~gR~g~~g~~i~~~~~~--e~~~~~~ie~~ 168 (456)
..+|. + +-.+.|.+||.=|....--+++++... ...+-+.+.+.
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~s 906 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLES 906 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHh
Confidence 66663 1 122378889988875442234444432 33344444333
No 161
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=97.18 E-value=0.0053 Score=67.09 Aligned_cols=69 Identities=25% Similarity=0.290 Sum_probs=53.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh------cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----ccccc-cCcCc
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPN 118 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~~~G-idip~ 118 (456)
..++||.|+|++.|.++++.+.. .+.+..+||+.+...+...+.. ..+|||+|+ .+.++ +++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~----~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ----GPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcC----CCCEEEECHHHHHHHHHcCCcchhh
Confidence 35799999999999999887753 3568889999888776665543 578999994 44444 78888
Q ss_pred cceEE
Q 012794 119 VDLII 123 (456)
Q Consensus 119 v~~VI 123 (456)
+.+||
T Consensus 150 l~~lV 154 (629)
T PRK11634 150 LSGLV 154 (629)
T ss_pred ceEEE
Confidence 88877
No 162
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.17 E-value=0.0065 Score=66.91 Aligned_cols=94 Identities=21% Similarity=0.253 Sum_probs=71.1
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcCC--EEEEeCCCCHHHHHHHHhcccCCCe-EEEEeccccccccCcCcc--ceEEec
Q 012794 51 GGKTIVFTQTKRDADEVSLALTSIIA--SEALHGDISQHQRERTLNGFRQGKF-TVLVATDVAARGLDIPNV--DLIIHY 125 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~~~~--~~~lhg~~~~~~R~~~l~~Fr~g~~-~vLVaTdv~~~Gidip~v--~~VI~~ 125 (456)
++++|||+++.+..+.+++.+..... ....++..+ +..++++|+...- -++|+|..+.+|||+|.- ..||..
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~ 555 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIV 555 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEE
Confidence 46899999999999999999985332 344555543 4478888887654 899999999999999854 668877
Q ss_pred CCCCC------------------------------hhHHHHHhcccccCCCC
Q 012794 126 ELPND------------------------------PETFVHRSGRTGRAGKE 147 (456)
Q Consensus 126 ~~p~~------------------------------~~~y~qr~GR~gR~g~~ 147 (456)
.+|.. .....|.+||.=|.-..
T Consensus 556 ~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D 607 (654)
T COG1199 556 GLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDD 607 (654)
T ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCC
Confidence 76642 33458999999995433
No 163
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.12 E-value=0.0016 Score=72.53 Aligned_cols=40 Identities=20% Similarity=0.337 Sum_probs=31.3
Q ss_pred cccHHHHHHHHHHHHC----------CCCcEEEEcCChHHHHHHHHHHHh
Q 012794 34 ATSKRTILSDLITVYA----------KGGKTIVFTQTKRDADEVSLALTS 73 (456)
Q Consensus 34 ~~~k~~~L~~ll~~~~----------~~~~~IIF~~t~~~a~~l~~~L~~ 73 (456)
...|...|.++|+.+. .+.++||||+...+|.+|.+.|..
T Consensus 268 e~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 268 ENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred cCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 4568888888776532 246799999999999999998865
No 164
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.06 E-value=0.002 Score=64.69 Aligned_cols=69 Identities=14% Similarity=0.265 Sum_probs=51.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHH----hcCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----c-cccccCcCccc
Q 012794 51 GGKTIVFTQTKRDADEVSLALT----SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----V-AARGLDIPNVD 120 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~----~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v-~~~Gidip~v~ 120 (456)
...+||+++|++.+.++..... +++...+++|+-...++.+.+++ .+.|+|||+ + ..--||+..++
T Consensus 294 ~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkr----gveiiiatPgrlndL~~~n~i~l~siT 369 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKR----GVEIIIATPGRLNDLQMDNVINLASIT 369 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhc----CceEEeeCCchHhhhhhcCeeeeeeeE
Confidence 3468999999999988765554 34778899988777776666665 789999995 3 23338888888
Q ss_pred eEE
Q 012794 121 LII 123 (456)
Q Consensus 121 ~VI 123 (456)
++|
T Consensus 370 YlV 372 (629)
T KOG0336|consen 370 YLV 372 (629)
T ss_pred EEE
Confidence 877
No 165
>COG4889 Predicted helicase [General function prediction only]
Probab=97.00 E-value=0.00059 Score=74.02 Aligned_cols=102 Identities=22% Similarity=0.400 Sum_probs=79.3
Q ss_pred CcEEEEcCChHHHHHHHHHHHh--------------cCCEEEEe--CCCCHHHHHHHHh---cccCCCeEEEEecccccc
Q 012794 52 GKTIVFTQTKRDADEVSLALTS--------------IIASEALH--GDISQHQRERTLN---GFRQGKFTVLVATDVAAR 112 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l~~~L~~--------------~~~~~~lh--g~~~~~~R~~~l~---~Fr~g~~~vLVaTdv~~~ 112 (456)
.++|-||.+.++..++++.+.. .+.+.+=| |.|.-.+|...+. .|.....+||--.-.+.+
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSE 540 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSE 540 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhc
Confidence 4689999999998888876642 13344444 7898888866554 456667888888889999
Q ss_pred ccCcCccceEEecCCCCChhHHHHHhcccccC--CC-CceEEEe
Q 012794 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRA--GK-EGTAILM 153 (456)
Q Consensus 113 Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~--g~-~g~~i~~ 153 (456)
|+|+|.++.||.+++-.+..+.+|.+||+-|- |+ -|..|+-
T Consensus 541 GVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILP 584 (1518)
T COG4889 541 GVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILP 584 (1518)
T ss_pred CCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEE
Confidence 99999999999999999999999999999993 22 2555543
No 166
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=96.97 E-value=0.0017 Score=68.32 Aligned_cols=87 Identities=17% Similarity=0.219 Sum_probs=61.4
Q ss_pred cccHHHH-HHHHHHHHCC---CCcEEEEcCChHHHHHHHHHHHh------cCCEEEEeCCCCHHHHHHHHhcccCCCeEE
Q 012794 34 ATSKRTI-LSDLITVYAK---GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTV 103 (456)
Q Consensus 34 ~~~k~~~-L~~ll~~~~~---~~~~IIF~~t~~~a~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~v 103 (456)
-.-|..+ +..++..+.. ..++||.|+|++.|.++++.+.. .+.+..++|+.+...+...++ ...+|
T Consensus 51 GsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~I 126 (460)
T PRK11776 51 GSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHI 126 (460)
T ss_pred CCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCE
Confidence 3456533 3334443322 23799999999999999987763 356888999999887766665 36789
Q ss_pred EEecc-----cccc-ccCcCccceEEe
Q 012794 104 LVATD-----VAAR-GLDIPNVDLIIH 124 (456)
Q Consensus 104 LVaTd-----v~~~-Gidip~v~~VI~ 124 (456)
+|+|+ .+.+ .+++.++.+||.
T Consensus 127 vV~Tp~rl~~~l~~~~~~l~~l~~lVi 153 (460)
T PRK11776 127 IVGTPGRILDHLRKGTLDLDALNTLVL 153 (460)
T ss_pred EEEChHHHHHHHHcCCccHHHCCEEEE
Confidence 99994 4444 478889998873
No 167
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.96 E-value=0.0026 Score=65.77 Aligned_cols=68 Identities=21% Similarity=0.357 Sum_probs=52.7
Q ss_pred CcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEec-----cccccc-cCcCccc
Q 012794 52 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT-----DVAARG-LDIPNVD 120 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaT-----dv~~~G-idip~v~ 120 (456)
..+||++||++.|++++..-.+ .+.+...+|+.+...+.. +-...++||||| |++++| |.++++.
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~----~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k 228 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLR----FIKRGCDILVATPGRLKDLIERGKISLDNCK 228 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhh----hhccCccEEEecCchhhhhhhcceeehhhCc
Confidence 5799999999999999887764 256788888854444333 333489999999 588888 8999998
Q ss_pred eEE
Q 012794 121 LII 123 (456)
Q Consensus 121 ~VI 123 (456)
++|
T Consensus 229 ~~v 231 (482)
T KOG0335|consen 229 FLV 231 (482)
T ss_pred EEE
Confidence 777
No 168
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.84 E-value=0.029 Score=54.61 Aligned_cols=79 Identities=20% Similarity=0.369 Sum_probs=61.3
Q ss_pred HHHhcccCCCeEEEEeccccccccCcCcc--------ceEEecCCCCChhHHHHHhcccccCCCC-ceEEEeeC---hhh
Q 012794 91 RTLNGFRQGKFTVLVATDVAARGLDIPNV--------DLIIHYELPNDPETFVHRSGRTGRAGKE-GTAILMFT---SSQ 158 (456)
Q Consensus 91 ~~l~~Fr~g~~~vLVaTdv~~~Gidip~v--------~~VI~~~~p~~~~~y~qr~GR~gR~g~~-g~~i~~~~---~~e 158 (456)
...+.|.+|+..|+|.|+.++.||.+..- .+-|...+||+.+..+|..||+.|.++. ...|.++. +-|
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 56679999999999999999999988632 2566789999999999999999999864 33344432 346
Q ss_pred HHHHHHHHHHh
Q 012794 159 RRTVRSLERDV 169 (456)
Q Consensus 159 ~~~~~~ie~~~ 169 (456)
+.+...+.+.+
T Consensus 132 ~Rfas~va~rL 142 (278)
T PF13871_consen 132 RRFASTVARRL 142 (278)
T ss_pred HHHHHHHHHHH
Confidence 66666666655
No 169
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.84 E-value=0.014 Score=62.07 Aligned_cols=89 Identities=20% Similarity=0.267 Sum_probs=71.1
Q ss_pred ccHHHHHHHHHH-HHCCCCcEEEEcCChHHHHHHHHHHHhc--CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccc
Q 012794 35 TSKRTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTSI--IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111 (456)
Q Consensus 35 ~~k~~~L~~ll~-~~~~~~~~IIF~~t~~~a~~l~~~L~~~--~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~ 111 (456)
.-|..+...++. .+..+.++||.+|+...+.++++.|.+. ..+..+|++++..+|.+++.+.+++..+|+|+|..+.
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 457666555443 3345678999999999999999999863 5688999999999999999999999999999997544
Q ss_pred cccCcCccceEEe
Q 012794 112 RGLDIPNVDLIIH 124 (456)
Q Consensus 112 ~Gidip~v~~VI~ 124 (456)
. +.++++.+||.
T Consensus 88 f-~p~~~l~lIIV 99 (505)
T TIGR00595 88 F-LPFKNLGLIIV 99 (505)
T ss_pred c-CcccCCCEEEE
Confidence 3 45778888773
No 170
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=96.76 E-value=0.0072 Score=66.04 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=12.2
Q ss_pred cccc-EEEeecCccceeeeecCHHHHHH
Q 012794 284 EIGK-IHIIADDRVQGAVFDLPEEIAKE 310 (456)
Q Consensus 284 ~ig~-i~~~~~~~~~~~~~dv~~~~a~~ 310 (456)
..|. |-.++|- .-+++.-+.|..
T Consensus 1074 sdgq~IV~VDdW----IklqIshEaAAc 1097 (1282)
T KOG0921|consen 1074 SDGQGIVRVDDW----IKLQISHEAAAC 1097 (1282)
T ss_pred ccCcceEEeece----eeEeccHHHHHH
Confidence 3444 5555554 456666555543
No 171
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.71 E-value=0.016 Score=65.28 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=58.2
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcC--ccceEEec
Q 012794 49 AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP--NVDLIIHY 125 (456)
Q Consensus 49 ~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip--~v~~VI~~ 125 (456)
..++++||++++.+..+.++..|.. .+.+ ...|.-. .+.+++++|+++.-.||++|....+|||+| ....||..
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~ 721 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVIT 721 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEe
Confidence 3468999999999999999999874 2333 3444221 246689999998888999999999999997 35556655
Q ss_pred CCC
Q 012794 126 ELP 128 (456)
Q Consensus 126 ~~p 128 (456)
.+|
T Consensus 722 kLP 724 (820)
T PRK07246 722 RLP 724 (820)
T ss_pred cCC
Confidence 555
No 172
>PTZ00110 helicase; Provisional
Probab=96.66 E-value=0.03 Score=60.32 Aligned_cols=68 Identities=13% Similarity=0.223 Sum_probs=52.3
Q ss_pred CcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----ccccc-cCcCccc
Q 012794 52 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNVD 120 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~~~G-idip~v~ 120 (456)
..+||.++|++.|.++.+.+.. .+.+.+++|+.+...+...+.. ..+|||+|+ .+..+ +++..+.
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~----~~~IlVaTPgrL~d~l~~~~~~l~~v~ 279 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRR----GVEILIACPGRLIDFLESNVTNLRRVT 279 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHc----CCCEEEECHHHHHHHHHcCCCChhhCc
Confidence 4689999999999999888764 2567889999887766655543 578999995 44444 6788888
Q ss_pred eEE
Q 012794 121 LII 123 (456)
Q Consensus 121 ~VI 123 (456)
+||
T Consensus 280 ~lV 282 (545)
T PTZ00110 280 YLV 282 (545)
T ss_pred EEE
Confidence 877
No 173
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.65 E-value=0.015 Score=64.38 Aligned_cols=77 Identities=26% Similarity=0.402 Sum_probs=58.4
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcC-CEEEEeCCCCHHHHHHHHhcccC----CCeEEEEeccccccccCcCc--cceE
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTSII-ASEALHGDISQHQRERTLNGFRQ----GKFTVLVATDVAARGLDIPN--VDLI 122 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~~~-~~~~lhg~~~~~~R~~~l~~Fr~----g~~~vLVaTdv~~~Gidip~--v~~V 122 (456)
..+.+|||+++.+..++++..|.... .-...++.. .+.++++.|++ +.-.||++|....+|||+|. +.+|
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 45679999999999999999987422 223446643 46778877764 56779999999999999985 6788
Q ss_pred EecCCCC
Q 012794 123 IHYELPN 129 (456)
Q Consensus 123 I~~~~p~ 129 (456)
|...+|.
T Consensus 610 II~kLPF 616 (697)
T PRK11747 610 IITKIPF 616 (697)
T ss_pred EEEcCCC
Confidence 8777663
No 174
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=96.64 E-value=0.0085 Score=62.54 Aligned_cols=68 Identities=16% Similarity=0.276 Sum_probs=53.0
Q ss_pred CcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc------ccccccCcCccc
Q 012794 52 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVD 120 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd------v~~~Gidip~v~ 120 (456)
.++||.++|++.|.++++.+.. .+.+..++|+.+...+..++.. ..+|||+|+ +....+++.++.
T Consensus 74 ~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~----~~~IlV~Tp~rl~~~~~~~~~~~~~v~ 149 (434)
T PRK11192 74 PRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSE----NQDIVVATPGRLLQYIKEENFDCRAVE 149 (434)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcC----CCCEEEEChHHHHHHHHcCCcCcccCC
Confidence 5799999999999998876653 3678899999998887766653 678999996 222446788888
Q ss_pred eEE
Q 012794 121 LII 123 (456)
Q Consensus 121 ~VI 123 (456)
+||
T Consensus 150 ~lV 152 (434)
T PRK11192 150 TLI 152 (434)
T ss_pred EEE
Confidence 877
No 175
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.61 E-value=0.014 Score=64.42 Aligned_cols=91 Identities=21% Similarity=0.277 Sum_probs=72.4
Q ss_pred CcccHHHHHHHHHH-HHCCCCcEEEEcCChHHHHHHHHHHHh--cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccc
Q 012794 33 TATSKRTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 109 (456)
Q Consensus 33 ~~~~k~~~L~~ll~-~~~~~~~~IIF~~t~~~a~~l~~~L~~--~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv 109 (456)
.-.-|..+...++. .+..+.++||.++|++.+.++++.|.+ +..+..+||+++..+|.+.+.+..++..+|+|+|..
T Consensus 171 TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrs 250 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARS 250 (679)
T ss_pred CCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccH
Confidence 34567766655443 334567899999999999999999986 357899999999999999999999999999999975
Q ss_pred cccccCcCccceEEe
Q 012794 110 AARGLDIPNVDLIIH 124 (456)
Q Consensus 110 ~~~Gidip~v~~VI~ 124 (456)
+.. +.+.++.+||.
T Consensus 251 al~-~p~~~l~liVv 264 (679)
T PRK05580 251 ALF-LPFKNLGLIIV 264 (679)
T ss_pred Hhc-ccccCCCEEEE
Confidence 433 56778888774
No 176
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.60 E-value=0.013 Score=62.57 Aligned_cols=120 Identities=15% Similarity=0.255 Sum_probs=93.5
Q ss_pred cccHHHHHHHHHHHH--CCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccC--CCeEEE-Eec
Q 012794 34 ATSKRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ--GKFTVL-VAT 107 (456)
Q Consensus 34 ~~~k~~~L~~ll~~~--~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~--g~~~vL-VaT 107 (456)
.+-|+..+..+++.+ ....++||...-.....-+...|.+ ++....+||.+..++|+.+++.|.. +..+|+ +.=
T Consensus 727 ~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSL 806 (901)
T KOG4439|consen 727 PSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSL 806 (901)
T ss_pred chhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEE
Confidence 345666666655544 3446777766666666667777775 6778889999999999999999964 445655 455
Q ss_pred cccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEe
Q 012794 108 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 153 (456)
Q Consensus 108 dv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~ 153 (456)
.+-+.|||+-..+|+|..|+.|++.--.|.+-|.-|.|++-.+++.
T Consensus 807 tAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 807 TAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred ccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 6778899999999999999999999999999999999987766654
No 177
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.55 E-value=0.0085 Score=66.22 Aligned_cols=91 Identities=16% Similarity=0.253 Sum_probs=72.3
Q ss_pred cccHHH-HHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEec
Q 012794 34 ATSKRT-ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 107 (456)
Q Consensus 34 ~~~k~~-~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaT 107 (456)
-+-|.. .+..++.....+.+++|.+||+..|.++++.+.+ ++.+..+||+++..+|..+++.+.+|.++|+|+|
T Consensus 292 GSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT 371 (681)
T PRK10917 292 GSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGT 371 (681)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEch
Confidence 345643 3334444455667999999999999999988874 2678999999999999999999999999999999
Q ss_pred cc-cccccCcCccceEEe
Q 012794 108 DV-AARGLDIPNVDLIIH 124 (456)
Q Consensus 108 dv-~~~Gidip~v~~VI~ 124 (456)
.. +...+.+.++.+||.
T Consensus 372 ~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 372 HALIQDDVEFHNLGLVII 389 (681)
T ss_pred HHHhcccchhcccceEEE
Confidence 74 344577889998883
No 178
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=96.50 E-value=0.033 Score=62.08 Aligned_cols=106 Identities=18% Similarity=0.292 Sum_probs=70.6
Q ss_pred cEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-------ccccc--cCcCc
Q 012794 53 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-------VAARG--LDIPN 118 (456)
Q Consensus 53 ~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-------v~~~G--idip~ 118 (456)
=+||.|+|++.+.+|.+.+.. .+.+++++|+..++++...+++ | ..|+|||. ++..| .+|-.
T Consensus 440 i~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkR---g-~eIvV~tpGRmiD~l~~n~grvtnlrR 515 (997)
T KOG0334|consen 440 IALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKR---G-AEIVVCTPGRMIDILCANSGRVTNLRR 515 (997)
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhc---C-CceEEeccchhhhhHhhcCCccccccc
Confidence 479999999999999988764 3678999999888877666655 5 78999994 33334 56666
Q ss_pred cceEEe--------cCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHh
Q 012794 119 VDLIIH--------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 169 (456)
Q Consensus 119 v~~VI~--------~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~ 169 (456)
+++||. +.+-.....++|.+ |+.| ..++++.+....+..+.+.+
T Consensus 516 ~t~lv~deaDrmfdmgfePq~~~Ii~nl-rpdr------QtvlfSatfpr~m~~la~~v 567 (997)
T KOG0334|consen 516 VTYLVLDEADRMFDMGFEPQITRILQNL-RPDR------QTVLFSATFPRSMEALARKV 567 (997)
T ss_pred cceeeechhhhhheeccCcccchHHhhc-chhh------hhhhhhhhhhHHHHHHHHHh
Confidence 777662 22323333488888 4333 34555555545566655543
No 179
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.29 E-value=0.015 Score=63.79 Aligned_cols=89 Identities=17% Similarity=0.280 Sum_probs=71.7
Q ss_pred ccHHHH-HHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc
Q 012794 35 TSKRTI-LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 35 ~~k~~~-L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
.-|..+ +..++.....+.+++|.+||+..|.++++.+.+ ++.+..+||+++..+|..+++...+++++|+|+|.
T Consensus 267 SGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~ 346 (630)
T TIGR00643 267 SGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTH 346 (630)
T ss_pred CcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecH
Confidence 456443 334555555677999999999999999988864 36789999999999999999999999999999997
Q ss_pred ccc-cccCcCccceEE
Q 012794 109 VAA-RGLDIPNVDLII 123 (456)
Q Consensus 109 v~~-~Gidip~v~~VI 123 (456)
.+- ..+.+.++.+||
T Consensus 347 ~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 347 ALIQEKVEFKRLALVI 362 (630)
T ss_pred HHHhccccccccceEE
Confidence 544 347788888877
No 180
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=96.26 E-value=0.043 Score=59.63 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=61.4
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcCC-EEEEeCCCCHHHHHHHHhcccCC----CeEEEEeccccccccCc--------
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTSIIA-SEALHGDISQHQRERTLNGFRQG----KFTVLVATDVAARGLDI-------- 116 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~~~~-~~~lhg~~~~~~R~~~l~~Fr~g----~~~vLVaTdv~~~Gidi-------- 116 (456)
..+.++|.+.+....+.+++.|...+. ...+.|+.+ .+..++++|+.. .-.||++|+.+-.|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 467999999999999999999986543 345567643 345678888874 67899999999999999
Q ss_pred --CccceEEecCCCC
Q 012794 117 --PNVDLIIHYELPN 129 (456)
Q Consensus 117 --p~v~~VI~~~~p~ 129 (456)
..+++||..-+|.
T Consensus 547 ~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 547 KDNLLTDLIITCAPF 561 (636)
T ss_pred CCCcccEEEEEeCCC
Confidence 3578898777763
No 181
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=96.05 E-value=0.024 Score=64.45 Aligned_cols=90 Identities=17% Similarity=0.226 Sum_probs=70.8
Q ss_pred ccHHHHHH-HHHHHHCCCCcEEEEcCChHHHHHHHHHHHhc-----CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc
Q 012794 35 TSKRTILS-DLITVYAKGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 35 ~~k~~~L~-~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~-----~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
.-|..+.. .++.....+.+++|.+||+..|.+.++.+.+. +.+..+++.++..++.++++.+++|+++|||+|.
T Consensus 483 sGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp 562 (926)
T TIGR00580 483 FGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTH 562 (926)
T ss_pred ccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchH
Confidence 45654332 33444445689999999999999999988742 4678899999999999999999999999999997
Q ss_pred -ccccccCcCccceEEe
Q 012794 109 -VAARGLDIPNVDLIIH 124 (456)
Q Consensus 109 -v~~~Gidip~v~~VI~ 124 (456)
++...+.+.++.+||.
T Consensus 563 ~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 563 KLLQKDVKFKDLGLLII 579 (926)
T ss_pred HHhhCCCCcccCCEEEe
Confidence 4445578888888773
No 182
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=96.01 E-value=0.052 Score=56.43 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=48.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----cccc-ccCcCcc
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPNV 119 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~~~-Gidip~v 119 (456)
+..+||..+|++.+.++.+.-.+ ++.++.+-|+++.+++---+.. ...|+|||+ +++. -+=+..|
T Consensus 322 gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~----gceiviatPgrLid~Lenr~lvl~qc 397 (673)
T KOG0333|consen 322 GPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSM----GCEIVIATPGRLIDSLENRYLVLNQC 397 (673)
T ss_pred CceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhc----cceeeecCchHHHHHHHHHHHHhccC
Confidence 56899999999999998765542 3678889999998877444444 578999995 3332 2334555
Q ss_pred ceEE
Q 012794 120 DLII 123 (456)
Q Consensus 120 ~~VI 123 (456)
++||
T Consensus 398 tyvv 401 (673)
T KOG0333|consen 398 TYVV 401 (673)
T ss_pred ceEe
Confidence 5555
No 183
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=96.00 E-value=0.07 Score=59.59 Aligned_cols=87 Identities=14% Similarity=0.168 Sum_probs=58.3
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHh----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-ccccc---------cC
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-VAARG---------LD 115 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-v~~~G---------id 115 (456)
+..++||.+||++.|.++...|.. .+.+..++|+.+..+|..+.+ ..+|||+|+ .+..+ ..
T Consensus 80 ~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~~-----~~~IivtTPd~L~~~~L~~~~~~~~~ 154 (742)
T TIGR03817 80 PRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWARE-----HARYVLTNPDMLHRGILPSHARWARF 154 (742)
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHhc-----CCCEEEEChHHHHHhhccchhHHHHH
Confidence 346899999999999999988874 356788999999887754432 368999995 33222 12
Q ss_pred cCccceEEecC-------CCCChhHHHHHhccc
Q 012794 116 IPNVDLIIHYE-------LPNDPETFVHRSGRT 141 (456)
Q Consensus 116 ip~v~~VI~~~-------~p~~~~~y~qr~GR~ 141 (456)
+.++.+||.=. +-.....++.|+-|.
T Consensus 155 l~~l~~vViDEah~~~g~fg~~~~~il~rL~ri 187 (742)
T TIGR03817 155 LRRLRYVVIDECHSYRGVFGSHVALVLRRLRRL 187 (742)
T ss_pred HhcCCEEEEeChhhccCccHHHHHHHHHHHHHH
Confidence 56788877311 112345556665544
No 184
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.00 E-value=0.035 Score=60.87 Aligned_cols=91 Identities=19% Similarity=0.269 Sum_probs=74.3
Q ss_pred cccHHHHHHHHHHHH-CCCCcEEEEcCChHHHHHHHHHHHhcC---CEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccc
Q 012794 34 ATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTSII---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 109 (456)
Q Consensus 34 ~~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~a~~l~~~L~~~~---~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv 109 (456)
-+.|.++...++... ..++++||.++....+.++.+.|...+ .++.+|++++..+|.+.+.+.++|+.+|+|.|-.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 456878777777654 457799999999999999999999644 4889999999999999999999999999999965
Q ss_pred cccccCcCccceEEec
Q 012794 110 AARGLDIPNVDLIIHY 125 (456)
Q Consensus 110 ~~~Gidip~v~~VI~~ 125 (456)
+.. +-++++.+||..
T Consensus 250 AvF-aP~~~LgLIIvd 264 (665)
T PRK14873 250 AVF-APVEDLGLVAIW 264 (665)
T ss_pred eEE-eccCCCCEEEEE
Confidence 433 455677777743
No 185
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=95.93 E-value=0.0029 Score=40.23 Aligned_cols=17 Identities=41% Similarity=1.257 Sum_probs=15.8
Q ss_pred CcccCCCCCcCcCCCCC
Q 012794 440 ACFNCGKSGHRASECPN 456 (456)
Q Consensus 440 ~~~~c~~~gh~~~~~p~ 456 (456)
-|+.|++.||.-+|||+
T Consensus 10 ~C~~C~~~GH~i~dCP~ 26 (32)
T PF13696_consen 10 VCHRCGQKGHWIQDCPT 26 (32)
T ss_pred EeecCCCCCccHhHCCC
Confidence 49999999999999995
No 186
>smart00343 ZnF_C2HC zinc finger.
Probab=95.72 E-value=0.0045 Score=37.60 Aligned_cols=15 Identities=67% Similarity=1.688 Sum_probs=14.7
Q ss_pred cccCCCCCcCcCCCC
Q 012794 441 CFNCGKSGHRASECP 455 (456)
Q Consensus 441 ~~~c~~~gh~~~~~p 455 (456)
|++|++.||++++||
T Consensus 2 C~~CG~~GH~~~~C~ 16 (26)
T smart00343 2 CYNCGKEGHIARDCP 16 (26)
T ss_pred CccCCCCCcchhhCC
Confidence 999999999999998
No 187
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=95.63 E-value=0.029 Score=49.60 Aligned_cols=67 Identities=19% Similarity=0.293 Sum_probs=36.3
Q ss_pred CCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCcccCCCCCcCcCCCCC
Q 012794 379 RSSRSWGSDDEDGFSSSRGG-RSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSRSFGGACFNCGKSGHRASECPN 456 (456)
Q Consensus 379 ~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~c~~~gh~~~~~p~ 456 (456)
..++.|+..+|....++... ......+..++ ..+|+... ..... ..+....||+|++.||+++|||+
T Consensus 28 ~~C~~Cg~~GH~~~~Cp~~~~~~~~~~C~~Cg-----~~GH~~~~-----Cp~~~-~~~~~~~C~~Cg~~GH~~~~C~~ 95 (148)
T PTZ00368 28 RPCYKCGEPGHLSRECPSAPGGRGERSCYNCG-----KTGHLSRE-----CPEAP-PGSGPRSCYNCGQTGHISRECPN 95 (148)
T ss_pred ccCccCCCCCcCcccCcCCCCCCCCcccCCCC-----CcCcCccc-----CCCcc-cCCCCcccCcCCCCCcccccCCC
Confidence 35677899998877775432 11122344333 22222100 00000 00123469999999999999985
No 188
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=95.45 E-value=0.054 Score=61.20 Aligned_cols=90 Identities=17% Similarity=0.171 Sum_probs=65.6
Q ss_pred EEEEcCChHHHHHHHHHHHhc-------CCEEEEeCCCCHHHHHHHHhcc----------------------cC----CC
Q 012794 54 TIVFTQTKRDADEVSLALTSI-------IASEALHGDISQHQRERTLNGF----------------------RQ----GK 100 (456)
Q Consensus 54 ~IIF~~t~~~a~~l~~~L~~~-------~~~~~lhg~~~~~~R~~~l~~F----------------------r~----g~ 100 (456)
.||=.++...+-.+|..|... +.+.++|+..+...|..+++.. ++ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 367777777788888877632 3477889998777776655442 11 35
Q ss_pred eEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCC
Q 012794 101 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 146 (456)
Q Consensus 101 ~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~ 146 (456)
..|+|+|.|++.|+|+. .+++|- -|.++.+++|++||+-|.+.
T Consensus 839 ~~i~v~Tqv~E~g~D~d-fd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDHD-YDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CeEEEEeeeEEEEeccc-CCeeee--ccCcHHHHHHHhhccccccc
Confidence 67999999999999984 444432 35678999999999999763
No 189
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=95.29 E-value=0.0098 Score=40.50 Aligned_cols=18 Identities=50% Similarity=1.141 Sum_probs=16.2
Q ss_pred CCcccCCCCCcCcCCCCC
Q 012794 439 GACFNCGKSGHRASECPN 456 (456)
Q Consensus 439 ~~~~~c~~~gh~~~~~p~ 456 (456)
..|.+|++.||+..+||+
T Consensus 5 ~~CqkC~~~GH~tyeC~~ 22 (42)
T PF13917_consen 5 VRCQKCGQKGHWTYECPN 22 (42)
T ss_pred CcCcccCCCCcchhhCCC
Confidence 459999999999999993
No 190
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=95.28 E-value=0.15 Score=52.78 Aligned_cols=109 Identities=17% Similarity=0.234 Sum_probs=69.4
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh------cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----cc-------cc
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VA-------AR 112 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~-------~~ 112 (456)
.-.+||.|+|++.|.+++..++. .+.+..+-|+-.... ..++..+ .++|||||+ .+ .+
T Consensus 154 ~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~---e~~kl~k-~~niliATPGRLlDHlqNt~~f~~r 229 (543)
T KOG0342|consen 154 GTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSV---EADKLVK-GCNILIATPGRLLDHLQNTSGFLFR 229 (543)
T ss_pred CeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchH---HHHHhhc-cccEEEeCCchHHhHhhcCCcchhh
Confidence 34789999999999988776653 245666667643332 2333333 789999995 11 12
Q ss_pred c---cCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhC
Q 012794 113 G---LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 170 (456)
Q Consensus 113 G---idip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~ 170 (456)
- +=+...+++...+++.+++.++-...+ -...++++......++.+.+..-
T Consensus 230 ~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk-------~rqt~LFSAT~~~kV~~l~~~~L 283 (543)
T KOG0342|consen 230 NLKCLVLDEADRLLDIGFEEDVEQIIKILPK-------QRQTLLFSATQPSKVKDLARGAL 283 (543)
T ss_pred ccceeEeecchhhhhcccHHHHHHHHHhccc-------cceeeEeeCCCcHHHHHHHHHhh
Confidence 1 223455666678888888888888763 23445556556666676666543
No 191
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=95.25 E-value=0.12 Score=51.91 Aligned_cols=108 Identities=16% Similarity=0.250 Sum_probs=71.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhc-----------CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----ccc---
Q 012794 51 GGKTIVFTQTKRDADEVSLALTSI-----------IASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAA--- 111 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~~-----------~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~~--- 111 (456)
+.-.||.|++++.|.+....+... +.+..--|+++-.++..++.+ .+.|+|||+ +++
T Consensus 246 GP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~----GvHivVATPGRL~DmL~KK~ 321 (610)
T KOG0341|consen 246 GPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRR----GVHIVVATPGRLMDMLAKKI 321 (610)
T ss_pred CCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhc----CeeEEEcCcchHHHHHHHhh
Confidence 345799999999999887766532 234444589999999888877 789999995 332
Q ss_pred ------cccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHh
Q 012794 112 ------RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 169 (456)
Q Consensus 112 ------~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~ 169 (456)
|=+-+...+..|++++-.++.++.--. +.-...++++.+-...++.+.+..
T Consensus 322 ~sLd~CRyL~lDEADRmiDmGFEddir~iF~~F-------K~QRQTLLFSATMP~KIQ~FAkSA 378 (610)
T KOG0341|consen 322 MSLDACRYLTLDEADRMIDMGFEDDIRTIFSFF-------KGQRQTLLFSATMPKKIQNFAKSA 378 (610)
T ss_pred ccHHHHHHhhhhhHHHHhhccchhhHHHHHHHH-------hhhhheeeeeccccHHHHHHHHhh
Confidence 334445566677888888776543322 122345556655555555555443
No 192
>PRK10689 transcription-repair coupling factor; Provisional
Probab=95.16 E-value=0.075 Score=61.87 Aligned_cols=91 Identities=15% Similarity=0.163 Sum_probs=69.5
Q ss_pred CcccHHHHHHH-HHHHHCCCCcEEEEcCChHHHHHHHHHHHhc-----CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEe
Q 012794 33 TATSKRTILSD-LITVYAKGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVA 106 (456)
Q Consensus 33 ~~~~k~~~L~~-ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~-----~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVa 106 (456)
.-.-|..+... +......+.+++|.|||+..|.+++..+.+. +.+..+++..+..++.++++.++++.++|||+
T Consensus 630 TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVg 709 (1147)
T PRK10689 630 VGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIG 709 (1147)
T ss_pred CCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 34567653322 2222345689999999999999999988742 46778999999999999999999999999999
Q ss_pred cc-ccccccCcCccceEE
Q 012794 107 TD-VAARGLDIPNVDLII 123 (456)
Q Consensus 107 Td-v~~~Gidip~v~~VI 123 (456)
|. .+...+.+.++.+||
T Consensus 710 Tp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 710 THKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred CHHHHhCCCCHhhCCEEE
Confidence 96 444456777888877
No 193
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.13 E-value=0.048 Score=59.97 Aligned_cols=92 Identities=23% Similarity=0.285 Sum_probs=76.2
Q ss_pred EcCcccHHHHHHHHHHHH-CCCCcEEEEcCChHHHHHHHHHHHh--cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEec
Q 012794 31 STTATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 107 (456)
Q Consensus 31 ~~~~~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~a~~l~~~L~~--~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaT 107 (456)
-++-+-|.++...++... ..++++||.++-.....++...|.. +..+.++|++|++.+|..+..+.++|+.+|+|.|
T Consensus 224 GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt 303 (730)
T COG1198 224 GVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGT 303 (730)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEe
Confidence 356678999888888655 5567999999999999999999985 4678999999999999999999999999999998
Q ss_pred cccccccCcCccceEE
Q 012794 108 DVAARGLDIPNVDLII 123 (456)
Q Consensus 108 dv~~~Gidip~v~~VI 123 (456)
-.|- -.-++++-+||
T Consensus 304 RSAl-F~Pf~~LGLII 318 (730)
T COG1198 304 RSAL-FLPFKNLGLII 318 (730)
T ss_pred chhh-cCchhhccEEE
Confidence 6432 23456777766
No 194
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=94.99 E-value=0.2 Score=53.66 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=48.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh---c--CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----cccc-ccCcCcc
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS---I--IASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPNV 119 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~---~--~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~~~-Gidip~v 119 (456)
...+||.++|++.|.++.+.+.. . +.+..+.|+.+..++...+. . ..+|||+|+ .+.+ .+++..+
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~---~-~~~IiV~TPgrL~~~l~~~~~~l~~v 271 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQ---Q-GVELIVGTPGRLIDLLSKHDIELDNV 271 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCccchhe
Confidence 35799999999999988776653 2 45667777766554433332 2 478999994 4433 5788888
Q ss_pred ceEE
Q 012794 120 DLII 123 (456)
Q Consensus 120 ~~VI 123 (456)
.+||
T Consensus 272 ~~lV 275 (518)
T PLN00206 272 SVLV 275 (518)
T ss_pred eEEE
Confidence 8877
No 195
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.98 E-value=0.56 Score=44.73 Aligned_cols=68 Identities=21% Similarity=0.288 Sum_probs=54.3
Q ss_pred cEEEEcCChHHHHHHHHHHH---hc---CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc------ccccccCcCccc
Q 012794 53 KTIVFTQTKRDADEVSLALT---SI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVD 120 (456)
Q Consensus 53 ~~IIF~~t~~~a~~l~~~L~---~~---~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd------v~~~Gidip~v~ 120 (456)
.+||.|.|++.|-++..... ++ .++.+++|+|+-+.-+++++. -..|+|+|+ +-.+-+++.++.
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~lk~vk 187 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPHIVVGTPGRILALVRNRSLNLKNVK 187 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCeEEEcCcHHHHHHHHhccCchhhcc
Confidence 57999999999999977654 33 468999999999888888876 668999997 334558888888
Q ss_pred eEEe
Q 012794 121 LIIH 124 (456)
Q Consensus 121 ~VI~ 124 (456)
+.|.
T Consensus 188 hFvl 191 (387)
T KOG0329|consen 188 HFVL 191 (387)
T ss_pred eeeh
Confidence 8663
No 196
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=94.97 E-value=0.29 Score=48.21 Aligned_cols=9 Identities=0% Similarity=0.287 Sum_probs=3.4
Q ss_pred HHHHHHHHh
Q 012794 161 TVRSLERDV 169 (456)
Q Consensus 161 ~~~~ie~~~ 169 (456)
.+..|+..+
T Consensus 166 lfe~i~~kl 174 (465)
T KOG3973|consen 166 LFETIRQKL 174 (465)
T ss_pred HHHHHHHHH
Confidence 333333333
No 197
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=94.80 E-value=0.12 Score=45.72 Aligned_cols=68 Identities=21% Similarity=0.310 Sum_probs=37.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCcccCCCCCcCcCCCCC
Q 012794 379 RSSRSWGSDDEDGFSSSRGGR-SFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSRSFGGACFNCGKSGHRASECPN 456 (456)
Q Consensus 379 ~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~c~~~gh~~~~~p~ 456 (456)
..++.++..+|....++.... .....+..++. .+|+... ......++.....||+|++.||+++|||+
T Consensus 53 ~~C~~Cg~~GH~~~~Cp~~~~~~~~~~C~~Cg~-----~GH~~~~-----C~~~~~~~~~~~~C~~Cg~~gH~~~~C~~ 121 (148)
T PTZ00368 53 RSCYNCGKTGHLSRECPEAPPGSGPRSCYNCGQ-----TGHISRE-----CPNRAKGGAARRACYNCGGEGHISRDCPN 121 (148)
T ss_pred cccCCCCCcCcCcccCCCcccCCCCcccCcCCC-----CCccccc-----CCCcccccccchhhcccCcCCcchhcCCC
Confidence 356778889998877754321 12223444442 2222100 00000001223469999999999999995
No 198
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.78 E-value=0.25 Score=43.27 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHhcccCCC-eEEEEeccccccccCcCc--cceEEecCCCC
Q 012794 83 DISQHQRERTLNGFRQGK-FTVLVATDVAARGLDIPN--VDLIIHYELPN 129 (456)
Q Consensus 83 ~~~~~~R~~~l~~Fr~g~-~~vLVaTdv~~~Gidip~--v~~VI~~~~p~ 129 (456)
+....+...+++.|++.. ..||++|.-..+|||+|+ +..||...+|.
T Consensus 30 ~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 30 GEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred CCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 344445678888888654 379999988999999996 45788777764
No 199
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.77 E-value=0.36 Score=53.70 Aligned_cols=78 Identities=15% Similarity=0.240 Sum_probs=57.2
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-cC-------CEEEEeCCCCHHHHHHHHhcccC----CCeEEEEec--cccccccCc
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-II-------ASEALHGDISQHQRERTLNGFRQ----GKFTVLVAT--DVAARGLDI 116 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-~~-------~~~~lhg~~~~~~R~~~l~~Fr~----g~~~vLVaT--dv~~~Gidi 116 (456)
++.+|||.++....+.+++.+.. ++ ..+.+-+. ...+++.+++.|+. +.-.||+|+ ..+++|||+
T Consensus 522 pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~-~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf 600 (705)
T TIGR00604 522 PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETK-DAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDF 600 (705)
T ss_pred CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCC-CcchHHHHHHHHHHHHhcCCceEEEEecCCcccCcccc
Confidence 57899999999999998887763 11 11222121 12577889999964 345699998 899999999
Q ss_pred Cc--cceEEecCCCC
Q 012794 117 PN--VDLIIHYELPN 129 (456)
Q Consensus 117 p~--v~~VI~~~~p~ 129 (456)
++ +..||..++|.
T Consensus 601 ~~~~~r~ViivGlPf 615 (705)
T TIGR00604 601 CDDLGRAVIMVGIPY 615 (705)
T ss_pred CCCCCcEEEEEccCC
Confidence 85 57798888886
No 200
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=94.58 E-value=0.21 Score=43.85 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=31.2
Q ss_pred HHHHHHhcccCCCe---EEEEeccc--cccccCcCc--cceEEecCCCC
Q 012794 88 QRERTLNGFRQGKF---TVLVATDV--AARGLDIPN--VDLIIHYELPN 129 (456)
Q Consensus 88 ~R~~~l~~Fr~g~~---~vLVaTdv--~~~Gidip~--v~~VI~~~~p~ 129 (456)
+..++++.|++..- .||+++.- ..+|||+|+ +..||...+|.
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 34677788876433 58888876 999999996 56788877774
No 201
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=94.55 E-value=0.36 Score=50.32 Aligned_cols=70 Identities=29% Similarity=0.340 Sum_probs=57.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh--cC---CEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc------ccccccCcCcc
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS--II---ASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNV 119 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~--~~---~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd------v~~~Gidip~v 119 (456)
.+++|+.+||+-.+.+-+..+.+ ++ .+++|.|..++++|+..... .+|+|||+ +.+-=||+.++
T Consensus 58 ~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~-----~kVfvaTPQvveNDl~~Grid~~dv 132 (542)
T COG1111 58 GGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAK-----KKVFVATPQVVENDLKAGRIDLDDV 132 (542)
T ss_pred CCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhh-----CCEEEeccHHHHhHHhcCccChHHc
Confidence 34899999999999999998875 33 47899999999999988765 57999994 44444999999
Q ss_pred ceEEec
Q 012794 120 DLIIHY 125 (456)
Q Consensus 120 ~~VI~~ 125 (456)
.+||.=
T Consensus 133 ~~lifD 138 (542)
T COG1111 133 SLLIFD 138 (542)
T ss_pred eEEEec
Confidence 998843
No 202
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.47 E-value=0.5 Score=48.79 Aligned_cols=106 Identities=19% Similarity=0.349 Sum_probs=71.4
Q ss_pred cEEEEcCChHHHHHHHHHHHh------cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----cccc---ccCcCc
Q 012794 53 KTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR---GLDIPN 118 (456)
Q Consensus 53 ~~IIF~~t~~~a~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~~~---Gidip~ 118 (456)
-+||.++|++.|.++.+.+.. .+.+..+-|+.+.. +-++.|++...+|||+|+ ++.+ .+|+-.
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~---~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVE---EDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHH---HHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccc
Confidence 479999999999988776642 25688899996654 446678888899999995 4444 466657
Q ss_pred cceEE--------ecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHH
Q 012794 119 VDLII--------HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 168 (456)
Q Consensus 119 v~~VI--------~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~ 168 (456)
++++| .+++-.++..++-+.-+--|.| +++.++...+..|.+.
T Consensus 158 Le~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTG-------LFSATq~~~v~dL~ra 208 (567)
T KOG0345|consen 158 LEILVLDEADRLLDMGFEASVNTILSFLPKQRRTG-------LFSATQTQEVEDLARA 208 (567)
T ss_pred cceEEecchHhHhcccHHHHHHHHHHhcccccccc-------cccchhhHHHHHHHHh
Confidence 77766 4666667777776665543433 3444444445555443
No 203
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=94.31 E-value=0.023 Score=66.64 Aligned_cols=93 Identities=22% Similarity=0.383 Sum_probs=77.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHh--cCCEEEEeCCCC-----------HHHHHHHHhcccCCCeEEEEeccccccccCcCc
Q 012794 52 GKTIVFTQTKRDADEVSLALTS--IIASEALHGDIS-----------QHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 118 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l~~~L~~--~~~~~~lhg~~~-----------~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~ 118 (456)
-..||||+.+..+..+.+.+.+ ...+..+.|.+. +..+++++..|....+++|++|.++..|+|++.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 3569999999999999988874 233444444432 224678999999999999999999999999999
Q ss_pred cceEEecCCCCChhHHHHHhcccccC
Q 012794 119 VDLIIHYELPNDPETFVHRSGRTGRA 144 (456)
Q Consensus 119 v~~VI~~~~p~~~~~y~qr~GR~gR~ 144 (456)
++.|+.++.|.....|+|..||+-.+
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccc
Confidence 99999999999999999999997654
No 204
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=94.28 E-value=0.077 Score=55.55 Aligned_cols=66 Identities=23% Similarity=0.376 Sum_probs=53.8
Q ss_pred EEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----ccccc-c---CcCcc
Q 012794 54 TIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-L---DIPNV 119 (456)
Q Consensus 54 ~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~~~G-i---dip~v 119 (456)
+|||++|++.|.++.+.|.. .+.+..|.|+|+...+++++++ .-+|+|||+ ++..+ . ++.+|
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~v 341 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKKV 341 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhhc
Confidence 89999999999999998863 4789999999999999999998 678999997 33332 2 45666
Q ss_pred ceEE
Q 012794 120 DLII 123 (456)
Q Consensus 120 ~~VI 123 (456)
.++|
T Consensus 342 kcLV 345 (731)
T KOG0347|consen 342 KCLV 345 (731)
T ss_pred eEEE
Confidence 6655
No 205
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.16 E-value=0.087 Score=58.92 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=51.5
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhc------CCEE-EEeCCCCHHHHHHHHhcccCCCeEEEEeccc
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTSI------IASE-ALHGDISQHQRERTLNGFRQGKFTVLVATDV 109 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~~------~~~~-~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv 109 (456)
++++++|.+||...+.++++.|.+. +.+. .+|+.|+.++++.++++|.+|.++|||+|..
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 4689999999999999999998742 2222 2899999999999999999999999999963
No 206
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=93.60 E-value=0.23 Score=54.05 Aligned_cols=109 Identities=20% Similarity=0.290 Sum_probs=88.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhc-C------------------CEEEEeCCCCHHHHHHHHhcccCC---CeEEEEecc
Q 012794 51 GGKTIVFTQTKRDADEVSLALTSI-I------------------ASEALHGDISQHQRERTLNGFRQG---KFTVLVATD 108 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~~-~------------------~~~~lhg~~~~~~R~~~l~~Fr~g---~~~vLVaTd 108 (456)
+.++|||.......+.|.+.|.+. + .-.-+.|-.+...|++.+++|.+. .+-+|++|-
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 568999999888888887777642 1 123456778889999999999863 346888999
Q ss_pred ccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhH
Q 012794 109 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 159 (456)
Q Consensus 109 v~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~ 159 (456)
...-|||+-..+-+|.+|.-|++.--.|.+-|+-|.|++..|+++-.-.+.
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~ 849 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDN 849 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhh
Confidence 999999998888999999999999999999999999999888887554443
No 207
>PRK14701 reverse gyrase; Provisional
Probab=93.57 E-value=0.2 Score=60.23 Aligned_cols=60 Identities=22% Similarity=0.316 Sum_probs=52.7
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHh-------cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccc
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTS-------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 109 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~-------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv 109 (456)
++.++||.+||++.+.+++..|.. .+.+.++||+++..++.++++.++++..+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 456899999999999999998875 245788999999999999999999999999999973
No 208
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.49 E-value=0.095 Score=51.39 Aligned_cols=111 Identities=18% Similarity=0.273 Sum_probs=68.7
Q ss_pred CcEEEEcCChHHHHHHHHHH---Hhc--CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEec-----cccccc-cCcCccc
Q 012794 52 GKTIVFTQTKRDADEVSLAL---TSI--IASEALHGDISQHQRERTLNGFRQGKFTVLVAT-----DVAARG-LDIPNVD 120 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l~~~L---~~~--~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaT-----dv~~~G-idip~v~ 120 (456)
-++||.++|++.|.+..+.. .++ +.+.+..|+.+- |..++.- +..+.++|+| |.+..| -|+.++.
T Consensus 154 IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~l--rDDI~Rl--~~~VH~~vgTPGRIlDL~~KgVa~ls~c~ 229 (459)
T KOG0326|consen 154 IQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSL--RDDIMRL--NQTVHLVVGTPGRILDLAKKGVADLSDCV 229 (459)
T ss_pred eeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCccc--ccceeee--cCceEEEEcCChhHHHHHhcccccchhce
Confidence 47899999999888766544 443 567777888543 3333332 3478999999 577888 4677777
Q ss_pred eEEe--------cCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHH-HHHHHhCCCc
Q 012794 121 LIIH--------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR-SLERDVGCKF 173 (456)
Q Consensus 121 ~VI~--------~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~-~ie~~~~~~~ 173 (456)
++|. .++-..++..+.-.- +...+++|+..-...++ .+.+++..+.
T Consensus 230 ~lV~DEADKlLs~~F~~~~e~li~~lP-------~~rQillySATFP~tVk~Fm~~~l~kPy 284 (459)
T KOG0326|consen 230 ILVMDEADKLLSVDFQPIVEKLISFLP-------KERQILLYSATFPLTVKGFMDRHLKKPY 284 (459)
T ss_pred EEEechhhhhhchhhhhHHHHHHHhCC-------ccceeeEEecccchhHHHHHHHhccCcc
Confidence 6663 334445666666663 34556666654433333 3444444443
No 209
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.37 E-value=0.049 Score=59.59 Aligned_cols=119 Identities=16% Similarity=0.202 Sum_probs=95.5
Q ss_pred cccHHHHHHHHHHHHC-CC-CcEEEEcCChHHHHHHHHHHH-hcCCEEEEeCCCCHHHHHHHHhcccCCC-eE-EEEecc
Q 012794 34 ATSKRTILSDLITVYA-KG-GKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK-FT-VLVATD 108 (456)
Q Consensus 34 ~~~k~~~L~~ll~~~~-~~-~~~IIF~~t~~~a~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~-~~-vLVaTd 108 (456)
.+.|+..+..+|.... .. .++|||+.-...++.+...|. ..+....+-|.|+..+|.+++..|..+. .+ .|++..
T Consensus 520 ~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slk 599 (674)
T KOG1001|consen 520 ESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLK 599 (674)
T ss_pred hhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHH
Confidence 4566666666665331 12 389999999998888888776 3566667779999999999999999653 33 346778
Q ss_pred ccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEE
Q 012794 109 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 152 (456)
Q Consensus 109 v~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~ 152 (456)
+...|+++-...+|+..|+-|++..-.|.+-|+.|.|+.-.+.+
T Consensus 600 ag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 600 AGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred HhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 99999999999999999999999999999999999997765555
No 210
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=93.26 E-value=0.19 Score=58.81 Aligned_cols=75 Identities=17% Similarity=0.314 Sum_probs=56.6
Q ss_pred cccHHHHHHHHHHHH-CCCCcEEEEcCChHHHHHHHHHHHhc-----CCE---EEEeCCCCHHHHHHHHhcccCCCeEEE
Q 012794 34 ATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTSI-----IAS---EALHGDISQHQRERTLNGFRQGKFTVL 104 (456)
Q Consensus 34 ~~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~a~~l~~~L~~~-----~~~---~~lhg~~~~~~R~~~l~~Fr~g~~~vL 104 (456)
..-|...+.-++..+ ..+.++||.+||++.|.++++.+... +.+ ..+||+++..+++..++.++++..+||
T Consensus 103 GsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIl 182 (1171)
T TIGR01054 103 GVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDIL 182 (1171)
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEE
Confidence 356765333222222 34578999999999999999888742 222 358999999999999999999989999
Q ss_pred Eecc
Q 012794 105 VATD 108 (456)
Q Consensus 105 VaTd 108 (456)
|+|+
T Consensus 183 V~Tp 186 (1171)
T TIGR01054 183 ITTT 186 (1171)
T ss_pred EECH
Confidence 9996
No 211
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=93.17 E-value=0.36 Score=52.18 Aligned_cols=86 Identities=19% Similarity=0.286 Sum_probs=71.4
Q ss_pred HHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccc-c
Q 012794 39 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA-R 112 (456)
Q Consensus 39 ~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~-~ 112 (456)
-++..++..+..+.++...+||--.|++.+..+.+ ++.+..|.|.+..++|+++++...+|.++|+|.|-++- .
T Consensus 299 VA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd 378 (677)
T COG1200 299 VALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD 378 (677)
T ss_pred HHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc
Confidence 33444555666788999999998888888877764 46789999999999999999999999999999997654 5
Q ss_pred ccCcCccceEEe
Q 012794 113 GLDIPNVDLIIH 124 (456)
Q Consensus 113 Gidip~v~~VI~ 124 (456)
.+++.++-+||.
T Consensus 379 ~V~F~~LgLVIi 390 (677)
T COG1200 379 KVEFHNLGLVII 390 (677)
T ss_pred ceeecceeEEEE
Confidence 688988888874
No 212
>PRK14873 primosome assembly protein PriA; Provisional
Probab=92.93 E-value=0.33 Score=53.38 Aligned_cols=69 Identities=12% Similarity=0.158 Sum_probs=47.5
Q ss_pred HHHHhcccCCCeEEEEecc----ccccccCcCccceEEecC------CCC------ChhHHHHHhcccccCCCCceEEEe
Q 012794 90 ERTLNGFRQGKFTVLVATD----VAARGLDIPNVDLIIHYE------LPN------DPETFVHRSGRTGRAGKEGTAILM 153 (456)
Q Consensus 90 ~~~l~~Fr~g~~~vLVaTd----v~~~Gidip~v~~VI~~~------~p~------~~~~y~qr~GR~gR~g~~g~~i~~ 153 (456)
+.+++.|.. +.+|||+|. +++ +++++|+..| .|. ....+.|-+||+||..+.|.+++.
T Consensus 462 d~~l~~~~~-~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq 535 (665)
T PRK14873 462 DQVVDTVDA-GPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVV 535 (665)
T ss_pred HHHHHhhcc-CCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEE
Confidence 357888874 899999998 555 3566665433 222 245568999999999999999988
Q ss_pred eChhhHHHHHHH
Q 012794 154 FTSSQRRTVRSL 165 (456)
Q Consensus 154 ~~~~e~~~~~~i 165 (456)
..+ +...++.+
T Consensus 536 ~~p-~~~~~~~l 546 (665)
T PRK14873 536 AES-SLPTVQAL 546 (665)
T ss_pred eCC-CCHHHHHH
Confidence 643 33444433
No 213
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=92.03 E-value=0.69 Score=48.08 Aligned_cols=69 Identities=10% Similarity=0.202 Sum_probs=51.5
Q ss_pred CcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----ccc-cccCcCccc
Q 012794 52 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAA-RGLDIPNVD 120 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~~-~Gidip~v~ 120 (456)
.++||.++|++.|.++++.+.. .+.+..++|+.+...+...++. ..+|||+|+ .+. .-+++..+.
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~----~~~IlV~TP~~l~~~l~~~~~~l~~v~ 159 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLES----GVDILIGTTGRLIDYAKQNHINLGAIQ 159 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcC----CCCEEEECHHHHHHHHHcCCccccccc
Confidence 4799999999999998776642 3678889999887666555532 578999996 222 347888888
Q ss_pred eEEe
Q 012794 121 LIIH 124 (456)
Q Consensus 121 ~VI~ 124 (456)
+||.
T Consensus 160 ~lVi 163 (423)
T PRK04837 160 VVVL 163 (423)
T ss_pred EEEE
Confidence 8773
No 214
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.73 E-value=1.3 Score=45.17 Aligned_cols=70 Identities=17% Similarity=0.224 Sum_probs=51.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc------ccccccCcCcc
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNV 119 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd------v~~~Gidip~v 119 (456)
+-+++|..+|++.+.+.-+.++. .+.+.++.|+-+.+++-..+.. .-+|++||+ .++.-+++..|
T Consensus 90 g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~----npDii~ATpgr~~h~~vem~l~l~sv 165 (529)
T KOG0337|consen 90 GLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNE----NPDIIIATPGRLLHLGVEMTLTLSSV 165 (529)
T ss_pred ccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhcc----CCCEEEecCceeeeeehheeccccce
Confidence 35899999999999888777763 2566767777666665555543 678999996 45556888899
Q ss_pred ceEEe
Q 012794 120 DLIIH 124 (456)
Q Consensus 120 ~~VI~ 124 (456)
.+||.
T Consensus 166 eyVVf 170 (529)
T KOG0337|consen 166 EYVVF 170 (529)
T ss_pred eeeee
Confidence 99994
No 215
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=91.61 E-value=0.075 Score=48.30 Aligned_cols=16 Identities=56% Similarity=1.545 Sum_probs=15.1
Q ss_pred CcccCCCCCcCcCCCC
Q 012794 440 ACFNCGKSGHRASECP 455 (456)
Q Consensus 440 ~~~~c~~~gh~~~~~p 455 (456)
.||+||+-||..+|||
T Consensus 62 ~C~nCg~~GH~~~DCP 77 (190)
T COG5082 62 VCFNCGQNGHLRRDCP 77 (190)
T ss_pred ccchhcccCcccccCC
Confidence 3999999999999999
No 216
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=91.58 E-value=0.73 Score=52.77 Aligned_cols=88 Identities=17% Similarity=0.279 Sum_probs=70.9
Q ss_pred cHHHHHHH-HHHHHCCCCcEEEEcCChHHHHHHHHHHHhc-----CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEec-c
Q 012794 36 SKRTILSD-LITVYAKGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVAT-D 108 (456)
Q Consensus 36 ~k~~~L~~-ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~-----~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaT-d 108 (456)
-|.++..+ .......++++.|.|||.-.|++-++.+++. +.+..|.-=.+.+++..+++..++|+++|||.| .
T Consensus 627 GKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr 706 (1139)
T COG1197 627 GKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR 706 (1139)
T ss_pred cHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH
Confidence 45544333 3344455789999999999999999999853 356777777889999999999999999999999 4
Q ss_pred ccccccCcCccceEE
Q 012794 109 VAARGLDIPNVDLII 123 (456)
Q Consensus 109 v~~~Gidip~v~~VI 123 (456)
++...|-+.++-+||
T Consensus 707 LL~kdv~FkdLGLlI 721 (1139)
T COG1197 707 LLSKDVKFKDLGLLI 721 (1139)
T ss_pred hhCCCcEEecCCeEE
Confidence 777788888888877
No 217
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=91.41 E-value=3 Score=38.17 Aligned_cols=69 Identities=22% Similarity=0.350 Sum_probs=50.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----ccccc-cCcCcc
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNV 119 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~~~G-idip~v 119 (456)
..++||.|+|+..+.+.+..+.. .+.+..++|+.+..+....++ ....|+|+|. .+..+ .+++++
T Consensus 69 ~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~l 144 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSKV 144 (203)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhhC
Confidence 45899999999999998877653 356788899988876655544 4678999995 23233 677788
Q ss_pred ceEE
Q 012794 120 DLII 123 (456)
Q Consensus 120 ~~VI 123 (456)
++||
T Consensus 145 ~~lI 148 (203)
T cd00268 145 KYLV 148 (203)
T ss_pred CEEE
Confidence 8877
No 218
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=91.27 E-value=0.088 Score=47.86 Aligned_cols=54 Identities=19% Similarity=0.364 Sum_probs=32.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCcccCCCCCcCcCCC-C
Q 012794 379 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSRSFGGACFNCGKSGHRASEC-P 455 (456)
Q Consensus 379 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~c~~~gh~~~~~-p 455 (456)
.-|..||..||..++|+ . .=...|.+.+ |. +... .-.--|++||+-||.++|| |
T Consensus 61 ~~C~nCg~~GH~~~DCP-~--~iC~~C~~~~--------H~-----s~~C-------~~~~~C~~Cg~~GH~~~dC~P 115 (190)
T COG5082 61 PVCFNCGQNGHLRRDCP-H--SICYNCSWDG--------HR-----SNHC-------PKPKKCYNCGETGHLSRDCNP 115 (190)
T ss_pred cccchhcccCcccccCC-h--hHhhhcCCCC--------cc-----cccC-------CcccccccccccCccccccCc
Confidence 35778999999888888 2 1122222111 11 0000 0013499999999999999 5
No 219
>PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A.
Probab=91.24 E-value=0.11 Score=33.84 Aligned_cols=15 Identities=60% Similarity=1.052 Sum_probs=11.4
Q ss_pred CcccCCCCCcCcCCC
Q 012794 440 ACFNCGKSGHRASEC 454 (456)
Q Consensus 440 ~~~~c~~~gh~~~~~ 454 (456)
-|++|++..|.|+||
T Consensus 4 ~CprC~kg~Hwa~~C 18 (36)
T PF14787_consen 4 LCPRCGKGFHWASEC 18 (36)
T ss_dssp C-TTTSSSCS-TTT-
T ss_pred cCcccCCCcchhhhh
Confidence 499999999999999
No 220
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.16 E-value=0.81 Score=48.36 Aligned_cols=59 Identities=24% Similarity=0.338 Sum_probs=52.9
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
..+.+||.+||++.+.+....|.. ++.+..++++.+..++..++..++.+.++||++|+
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TP 109 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTP 109 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 357899999999999988888875 78899999999999999999999999999999996
No 221
>PRK13766 Hef nuclease; Provisional
Probab=91.04 E-value=3 Score=46.93 Aligned_cols=70 Identities=26% Similarity=0.413 Sum_probs=53.7
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhc--C---CEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc------ccccccCcCc
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTSI--I---ASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPN 118 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~~--~---~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd------v~~~Gidip~ 118 (456)
..+++||.|+|+..+++.++.+... + .+..++|+.+..+|.+.+.. ..|+|+|+ .+..-+++.+
T Consensus 57 ~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~-----~~iiv~T~~~l~~~l~~~~~~~~~ 131 (773)
T PRK13766 57 KGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEK-----AKVIVATPQVIENDLIAGRISLED 131 (773)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHhC-----CCEEEECHHHHHHHHHcCCCChhh
Confidence 4689999999999999988888752 2 67889999999988776643 47999995 2334467778
Q ss_pred cceEEe
Q 012794 119 VDLIIH 124 (456)
Q Consensus 119 v~~VI~ 124 (456)
+++||.
T Consensus 132 ~~liVv 137 (773)
T PRK13766 132 VSLLIF 137 (773)
T ss_pred CcEEEE
Confidence 888774
No 222
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=90.78 E-value=1.2 Score=47.06 Aligned_cols=110 Identities=14% Similarity=0.190 Sum_probs=74.2
Q ss_pred CcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----cccc--ccCcCcc
Q 012794 52 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR--GLDIPNV 119 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~~~--Gidip~v 119 (456)
--+||..+|++.|.++.+.|.+ .+.+..+-|+..-+ .+.-|-..++|||||+ .+-. .++-+++
T Consensus 142 lGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k-----~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~l 216 (758)
T KOG0343|consen 142 LGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVK-----FELERISQMNILVCTPGRLLQHMDENPNFSTSNL 216 (758)
T ss_pred ceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhH-----HHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcc
Confidence 3689999999999999999974 26777777875432 2233334689999996 2222 3445566
Q ss_pred ceEE--------ecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCc
Q 012794 120 DLII--------HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 173 (456)
Q Consensus 120 ~~VI--------~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~ 173 (456)
.++| .+++-...+.++--+ ......++++.++...++.|.+..-.+.
T Consensus 217 QmLvLDEADR~LDMGFk~tL~~Ii~~l-------P~~RQTLLFSATqt~svkdLaRLsL~dP 271 (758)
T KOG0343|consen 217 QMLVLDEADRMLDMGFKKTLNAIIENL-------PKKRQTLLFSATQTKSVKDLARLSLKDP 271 (758)
T ss_pred eEEEeccHHHHHHHhHHHHHHHHHHhC-------ChhheeeeeecccchhHHHHHHhhcCCC
Confidence 6555 456666667766655 3455677777777777888877744433
No 223
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=90.77 E-value=1.4 Score=42.79 Aligned_cols=119 Identities=13% Similarity=0.143 Sum_probs=68.2
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh---c--CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----ccccc-cCcCcc
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS---I--IASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNV 119 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~---~--~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~~~G-idip~v 119 (456)
..++||..||++.|.++.+.+.. . +.|.+.-|+.+-.+-.+.++. ...|+..|+ +..++ +.--+|
T Consensus 95 ~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~----G~hvVsGtPGrv~dmikr~~L~tr~v 170 (400)
T KOG0328|consen 95 ETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDY----GQHVVSGTPGRVLDMIKRRSLRTRAV 170 (400)
T ss_pred eeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcc----cceEeeCCCchHHHHHHhccccccce
Confidence 46799999999999999887763 2 445555566655544444442 446777774 55555 777777
Q ss_pred ceEEecCCC--CChhHHHHHhcccccCCCCceEEEeeChh-hHHHHHHHHHHhCCCce
Q 012794 120 DLIIHYELP--NDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFE 174 (456)
Q Consensus 120 ~~VI~~~~p--~~~~~y~qr~GR~gR~g~~g~~i~~~~~~-e~~~~~~ie~~~~~~~~ 174 (456)
.++|.-... .+. -+-+.+=+.-|.=.++..+++++.. ....++..+++..-++.
T Consensus 171 kmlVLDEaDemL~k-gfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvr 227 (400)
T KOG0328|consen 171 KMLVLDEADEMLNK-GFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVR 227 (400)
T ss_pred eEEEeccHHHHHHh-hHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCcee
Confidence 776642211 111 2223333344444556666665543 44555555555544443
No 224
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.73 E-value=2.7 Score=44.30 Aligned_cols=114 Identities=11% Similarity=0.209 Sum_probs=66.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcC-------CEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-------ccccccCc
Q 012794 51 GGKTIVFTQTKRDADEVSLALTSII-------ASEALHGDISQHQRERTLNGFRQGKFTVLVATD-------VAARGLDI 116 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~~~-------~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-------v~~~Gidi 116 (456)
+--+||.++|++.|.++++.+.+.+ .+..+-|+-...++. ++| ..++|||+|+ .--..|++
T Consensus 211 G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKA----RLR-KGiNILIgTPGRLvDHLknT~~i~~ 285 (708)
T KOG0348|consen 211 GPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKA----RLR-KGINILIGTPGRLVDHLKNTKSIKF 285 (708)
T ss_pred CceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHH----HHh-cCceEEEcCchHHHHHHhccchhee
Confidence 3468999999999999998887532 233333433222222 222 2689999996 12345788
Q ss_pred CccceEE--------ecCCCCChhHHHHHhcccccCCCCc------eEEEeeChhhHHHHHHHHHHh
Q 012794 117 PNVDLII--------HYELPNDPETFVHRSGRTGRAGKEG------TAILMFTSSQRRTVRSLERDV 169 (456)
Q Consensus 117 p~v~~VI--------~~~~p~~~~~y~qr~GR~gR~g~~g------~~i~~~~~~e~~~~~~ie~~~ 169 (456)
..+.||| ..++-.++..++..++-.-++-.+- ..-++++.+-...+.+|....
T Consensus 286 s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~s 352 (708)
T KOG0348|consen 286 SRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLS 352 (708)
T ss_pred eeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhcc
Confidence 8888888 3556677777777775433332121 233444444444455554443
No 225
>PF15288 zf-CCHC_6: Zinc knuckle
Probab=90.46 E-value=0.13 Score=34.43 Aligned_cols=16 Identities=50% Similarity=1.213 Sum_probs=13.9
Q ss_pred CcccCCCCCcCcCC--CC
Q 012794 440 ACFNCGKSGHRASE--CP 455 (456)
Q Consensus 440 ~~~~c~~~gh~~~~--~p 455 (456)
.|-+||.-||++++ ||
T Consensus 3 kC~~CG~~GH~~t~k~CP 20 (40)
T PF15288_consen 3 KCKNCGAFGHMRTNKRCP 20 (40)
T ss_pred cccccccccccccCccCC
Confidence 49999999999854 98
No 226
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=90.37 E-value=1.5 Score=48.57 Aligned_cols=113 Identities=18% Similarity=0.235 Sum_probs=76.4
Q ss_pred cHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecccccccc
Q 012794 36 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 114 (456)
Q Consensus 36 ~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gi 114 (456)
+.......|+..+..++++-||++|...++.+++.... ...+..+++.-+..+ + +.+ ++.+|+|=|+++..|+
T Consensus 267 ~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~W--~~~~VviYT~~itvG~ 340 (824)
T PF02399_consen 267 DETTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ESW--KKYDVVIYTPVITVGL 340 (824)
T ss_pred chhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-ccc--cceeEEEEeceEEEEe
Confidence 44555666676776778888999999999998888775 455667777654442 2 222 3689999999999999
Q ss_pred CcCccce--EEec--CCC--CChhHHHHHhcccccCCCCceEEEeeC
Q 012794 115 DIPNVDL--IIHY--ELP--NDPETFVHRSGRTGRAGKEGTAILMFT 155 (456)
Q Consensus 115 dip~v~~--VI~~--~~p--~~~~~y~qr~GR~gR~g~~g~~i~~~~ 155 (456)
++..... |+-| ... .+..+..|++||+-... ....++++.
T Consensus 341 Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d 386 (824)
T PF02399_consen 341 SFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYID 386 (824)
T ss_pred ccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEe
Confidence 9975532 3323 111 35667899999985543 334444443
No 227
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=89.92 E-value=3.7 Score=36.05 Aligned_cols=86 Identities=19% Similarity=0.276 Sum_probs=57.9
Q ss_pred ccHHHHHH-HHHHHHC--CCCcEEEEcCChHHHHHHHHHHHhc-----CCEEEEeCCCCHH-HHHHHHhcccCCCeEEEE
Q 012794 35 TSKRTILS-DLITVYA--KGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQH-QRERTLNGFRQGKFTVLV 105 (456)
Q Consensus 35 ~~k~~~L~-~ll~~~~--~~~~~IIF~~t~~~a~~l~~~L~~~-----~~~~~lhg~~~~~-~R~~~l~~Fr~g~~~vLV 105 (456)
.-|..... .++.... +..++||.+++++.++++...+.+. +.+..+|++.+.. +....+ ....+|||
T Consensus 25 sGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv 100 (169)
T PF00270_consen 25 SGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SNQADILV 100 (169)
T ss_dssp SSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HTTSSEEE
T ss_pred CccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccccccccccccccc----cccccccc
Confidence 45754444 3333332 2349999999999999999888742 4688899998855 344444 44688999
Q ss_pred ecc-----cc-ccccCcCccceEEe
Q 012794 106 ATD-----VA-ARGLDIPNVDLIIH 124 (456)
Q Consensus 106 aTd-----v~-~~Gidip~v~~VI~ 124 (456)
+|. .. ...+++..+++||.
T Consensus 101 ~T~~~l~~~~~~~~~~~~~~~~iVi 125 (169)
T PF00270_consen 101 TTPEQLLDLISNGKINISRLSLIVI 125 (169)
T ss_dssp EEHHHHHHHHHTTSSTGTTESEEEE
T ss_pred cCcchhhccccccccccccceeecc
Confidence 994 22 22357777887773
No 228
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=89.27 E-value=1.7 Score=45.91 Aligned_cols=69 Identities=10% Similarity=0.208 Sum_probs=50.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----cc-ccccCcCccc
Q 012794 52 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VA-ARGLDIPNVD 120 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~-~~Gidip~v~ 120 (456)
.++||.++|++.|.++++.+.. .+.+..++|+.+...+.+. +.....+|||+|+ .. ...+.+..+.
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~---~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~ 239 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQ---LEARFCDILVATPGRLLDFNQRGEVHLDMVE 239 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHH---HhCCCCCEEEECHHHHHHHHHcCCcccccCc
Confidence 5799999999999999887763 2568889998876554433 3345678999996 22 2346677888
Q ss_pred eEE
Q 012794 121 LII 123 (456)
Q Consensus 121 ~VI 123 (456)
+||
T Consensus 240 ~lV 242 (475)
T PRK01297 240 VMV 242 (475)
T ss_pred eEE
Confidence 777
No 229
>PRK09401 reverse gyrase; Reviewed
Probab=89.08 E-value=1.1 Score=52.61 Aligned_cols=90 Identities=22% Similarity=0.315 Sum_probs=60.2
Q ss_pred CcccHHHHHHHHHHH-HCCCCcEEEEcCChHHHHHHHHHHHhc-----CCEEEE--eCCCCHHHHHHHHhcccCCCeEEE
Q 012794 33 TATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTSI-----IASEAL--HGDISQHQRERTLNGFRQGKFTVL 104 (456)
Q Consensus 33 ~~~~k~~~L~~ll~~-~~~~~~~IIF~~t~~~a~~l~~~L~~~-----~~~~~l--hg~~~~~~R~~~l~~Fr~g~~~vL 104 (456)
...-|...+.-++.. ..++.++||.+||++.|.++++.+... +.+..+ |+.++..++...++.++++..+||
T Consensus 104 TGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~Il 183 (1176)
T PRK09401 104 TGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDIL 183 (1176)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEE
Confidence 345676443322222 234678999999999999999998742 233333 566778888888889998889999
Q ss_pred Eecc-----ccccccCcCccceEE
Q 012794 105 VATD-----VAARGLDIPNVDLII 123 (456)
Q Consensus 105 VaTd-----v~~~Gidip~v~~VI 123 (456)
|+|+ .+. .+....+++||
T Consensus 184 V~Tp~rL~~~~~-~l~~~~~~~lV 206 (1176)
T PRK09401 184 VTTSQFLSKNFD-ELPKKKFDFVF 206 (1176)
T ss_pred EECHHHHHHHHH-hccccccCEEE
Confidence 9995 222 33434466655
No 230
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=88.34 E-value=2 Score=46.76 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=52.6
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
..+.+||.+|++..+.+....|.. ++.+..+|++++..++..++..+..+.++||++|+
T Consensus 52 ~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tp 111 (591)
T TIGR01389 52 LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAP 111 (591)
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECh
Confidence 357899999999998888888875 78899999999999999999999999999999985
No 231
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=87.21 E-value=1.7 Score=51.88 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=53.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-----------------cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-----------------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD----- 108 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-----------------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd----- 108 (456)
..++|+.+++++.+.++.+.|.. .+.+..+||+.++.+|.+.++. ..+|||+|+
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~----ppdILVTTPEsL~~ 112 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRN----PPDILITTPESLYL 112 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcC----CCCEEEecHHHHHH
Confidence 35799999999999999887742 3567889999999999877654 678999995
Q ss_pred ccc-cc-cCcCccceEEe
Q 012794 109 VAA-RG-LDIPNVDLIIH 124 (456)
Q Consensus 109 v~~-~G-idip~v~~VI~ 124 (456)
++. +. ..+.+|.+||.
T Consensus 113 LLtsk~r~~L~~Vr~VIV 130 (1490)
T PRK09751 113 MLTSRARETLRGVETVII 130 (1490)
T ss_pred HHhhhhhhhhccCCEEEE
Confidence 222 22 35788998883
No 232
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=87.03 E-value=2.3 Score=49.21 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=49.8
Q ss_pred CCcEEEEcCChHHHH-HHHHHHHhcCCEEEEeCCCCHHHHHHHHhcccC--CCeEEEEecc
Q 012794 51 GGKTIVFTQTKRDAD-EVSLALTSIIASEALHGDISQHQRERTLNGFRQ--GKFTVLVATD 108 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~-~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~--g~~~vLVaTd 108 (456)
.+.+||.+|+++.+. ++...+..++.+..+.++++..++..+++.+.. +.++||++|+
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTP 560 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTP 560 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEECh
Confidence 568999999999987 555555568899999999999999999998876 8899999997
No 233
>KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.02 E-value=0.28 Score=47.68 Aligned_cols=18 Identities=39% Similarity=1.324 Sum_probs=16.2
Q ss_pred CCcccCCCCCcCcCCCCC
Q 012794 439 GACFNCGKSGHRASECPN 456 (456)
Q Consensus 439 ~~~~~c~~~gh~~~~~p~ 456 (456)
.-||+|++.||++.|||+
T Consensus 144 ~~Cy~Cg~~GH~s~~C~~ 161 (261)
T KOG4400|consen 144 AKCYSCGEQGHISDDCPE 161 (261)
T ss_pred CccCCCCcCCcchhhCCC
Confidence 459999999999999993
No 234
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=86.42 E-value=0.26 Score=34.78 Aligned_cols=17 Identities=53% Similarity=1.411 Sum_probs=15.5
Q ss_pred CcccCCCCCcCcCCCCC
Q 012794 440 ACFNCGKSGHRASECPN 456 (456)
Q Consensus 440 ~~~~c~~~gh~~~~~p~ 456 (456)
-|++||.-||-.++||-
T Consensus 33 ~C~~C~~~gH~~~~C~k 49 (49)
T PF14392_consen 33 FCFHCGRIGHSDKECPK 49 (49)
T ss_pred hhcCCCCcCcCHhHcCC
Confidence 39999999999999983
No 235
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.74 E-value=2.5 Score=44.55 Aligned_cols=113 Identities=21% Similarity=0.285 Sum_probs=82.2
Q ss_pred CcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccc--cccccCcCccceEEecCCC
Q 012794 52 GKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV--AARGLDIPNVDLIIHYELP 128 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv--~~~Gidip~v~~VI~~~~p 128 (456)
.-+|||.++--.--.|-.++++ .+....+|---++.+-.++-+-|-.|..+||+-|.= .-+-.+|..|.-||.|.+|
T Consensus 553 s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP 632 (698)
T KOG2340|consen 553 SGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPP 632 (698)
T ss_pred CceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCC
Confidence 4579999998888888888874 455455555455555566677888999999999964 3456888999999999999
Q ss_pred CChhHH---HHHhcccccCC----CCceEEEeeChhhHHHHHH
Q 012794 129 NDPETF---VHRSGRTGRAG----KEGTAILMFTSSQRRTVRS 164 (456)
Q Consensus 129 ~~~~~y---~qr~GR~gR~g----~~g~~i~~~~~~e~~~~~~ 164 (456)
..+.=| +.+++|+.-.| ..-+|.++|+..+.-.+..
T Consensus 633 ~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ 675 (698)
T KOG2340|consen 633 NNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLEN 675 (698)
T ss_pred CCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHH
Confidence 998766 56676664433 2357888888766544433
No 236
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=85.70 E-value=7.2 Score=37.35 Aligned_cols=87 Identities=15% Similarity=0.219 Sum_probs=66.1
Q ss_pred CCEEEEeCCCCHHHHHHHHhcccCC----CeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccc-cCCCCce
Q 012794 75 IASEALHGDISQHQRERTLNGFRQG----KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG-RAGKEGT 149 (456)
Q Consensus 75 ~~~~~lhg~~~~~~R~~~l~~Fr~g----~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~g-R~g~~g~ 149 (456)
+.+..++++.+... -.|.++ ...|+|.=+.++||+.++.+.+....--+...+++.||.=-.| |.|-...
T Consensus 111 ~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~dl 185 (239)
T PF10593_consen 111 IEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYEDL 185 (239)
T ss_pred ceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCcccccc
Confidence 77888887755433 234433 3789999999999999999999999988999999999975555 5555678
Q ss_pred EEEeeChhhHHHHHHHH
Q 012794 150 AILMFTSSQRRTVRSLE 166 (456)
Q Consensus 150 ~i~~~~~~e~~~~~~ie 166 (456)
|-++.++.-...+..|.
T Consensus 186 ~Ri~~~~~l~~~f~~i~ 202 (239)
T PF10593_consen 186 CRIYMPEELYDWFRHIA 202 (239)
T ss_pred eEEecCHHHHHHHHHHH
Confidence 88888776666665553
No 237
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=85.08 E-value=2.5 Score=43.48 Aligned_cols=66 Identities=18% Similarity=0.204 Sum_probs=47.9
Q ss_pred CcEEEEcCChHHHHHHHHHHHh-------cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----cccccc--CcC
Q 012794 52 GKTIVFTQTKRDADEVSLALTS-------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARGL--DIP 117 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l~~~L~~-------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~~~Gi--dip 117 (456)
..++|.++|++.|.+++..+.+ .+.++-+..+|+......++.. ...|+|+|+ .++.|+ ...
T Consensus 94 ~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d----~pdIvV~TP~~ll~~~~~~~~~~~~ 169 (569)
T KOG0346|consen 94 PSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMD----LPDIVVATPAKLLRHLAAGVLEYLD 169 (569)
T ss_pred ceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHcc----CCCeEEeChHHHHHHHhhccchhhh
Confidence 4689999999999999887764 2566777788888776666655 778999996 455554 333
Q ss_pred ccce
Q 012794 118 NVDL 121 (456)
Q Consensus 118 ~v~~ 121 (456)
.+.+
T Consensus 170 ~l~~ 173 (569)
T KOG0346|consen 170 SLSF 173 (569)
T ss_pred heee
Confidence 4443
No 238
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=84.61 E-value=0.4 Score=46.29 Aligned_cols=16 Identities=56% Similarity=1.479 Sum_probs=15.3
Q ss_pred cccCCCCCcCcCCCCC
Q 012794 441 CFNCGKSGHRASECPN 456 (456)
Q Consensus 441 ~~~c~~~gh~~~~~p~ 456 (456)
|+.||++||.+.|||.
T Consensus 163 cyrcGkeghwskEcP~ 178 (346)
T KOG0109|consen 163 CYRCGKEGHWSKECPV 178 (346)
T ss_pred heeccccccccccCCc
Confidence 9999999999999994
No 239
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=84.35 E-value=1.6 Score=50.28 Aligned_cols=112 Identities=19% Similarity=0.251 Sum_probs=77.4
Q ss_pred cHHHHHHHHHHHH---CCCCcEEEEcCChHHHHHHHHHHH-hcCCEEEEeCCCCHHHHHHHHhcccCCCeEE-EEecccc
Q 012794 36 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTV-LVATDVA 110 (456)
Q Consensus 36 ~k~~~L~~ll~~~---~~~~~~IIF~~t~~~a~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~v-LVaTdv~ 110 (456)
.|++.+...+..+ ....++|||+.-....+.+...+. +++.... -++ -+.-...+..|++ +++ |+-+...
T Consensus 1203 ~kI~~v~~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~-~~~--t~d~~dc~~~fk~--I~clll~~~~~ 1277 (1394)
T KOG0298|consen 1203 TKIDSVVIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQL-DGE--TEDFDDCIICFKS--IDCLLLFVSKG 1277 (1394)
T ss_pred cCchhHHHHHHHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhh-ccC--Ccchhhhhhhccc--ceEEEEEeccC
Confidence 4544443333222 335689999988777776666665 3332221 121 2334566777876 554 4678889
Q ss_pred ccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEE
Q 012794 111 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 152 (456)
Q Consensus 111 ~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~ 152 (456)
+-|+|+-+..||+..++-.++..-.|.+||..|.|++-...+
T Consensus 1278 ~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V 1319 (1394)
T KOG0298|consen 1278 SKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFV 1319 (1394)
T ss_pred cccccHHhhhhhheeccccCchHHHhhhhhhhhcccccchhh
Confidence 999999999999999999999999999999999997754443
No 240
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=83.29 E-value=4.7 Score=44.09 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=52.2
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
..+.+||.+|+++.+.+....|.. ++.+..+++.++..++..++...+.+.+++|++|+
T Consensus 64 ~~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 64 LDGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred cCCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 357899999999999988888875 68889999999999999999999999999999985
No 241
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=82.41 E-value=5.6 Score=38.43 Aligned_cols=133 Identities=19% Similarity=0.259 Sum_probs=74.1
Q ss_pred CeeEEEEEcCcc-cHHHHHHHHHHHH-CCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCC
Q 012794 24 GIKLYAISTTAT-SKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK 100 (456)
Q Consensus 24 ~i~~~~~~~~~~-~k~~~L~~ll~~~-~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~ 100 (456)
.|+|..+..... +--..+..++... .+.-++|||++...-+...-+.+++ .-.+..+-+.+.. --.+++. .
T Consensus 33 ~I~h~tyPdnf~~e~EttIskI~~lAdDp~mKaIVv~q~vpGt~~af~kIkekRpDIl~ia~~~~E--Dp~~i~~----~ 106 (275)
T PF12683_consen 33 MIKHVTYPDNFMSEQETTISKIVSLADDPDMKAIVVSQAVPGTAEAFRKIKEKRPDILLIAGEPHE--DPEVISS----A 106 (275)
T ss_dssp EEEEEE--TTGGGCHHHHHHHHHGGGG-TTEEEEEEE-SS---HHHHHHHHHH-TTSEEEESS--S---HHHHHH----H
T ss_pred eEEEEeCCCcccchHHHHHHHHHHhccCCCccEEEEeCCCcchHHHHHHHHhcCCCeEEEcCCCcC--CHHHHhh----c
Confidence 577877766543 3333444555422 4567999999998887777777774 3445555555322 2233444 4
Q ss_pred eEEEEeccccccccCcCc------cceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCce
Q 012794 101 FTVLVATDVAARGLDIPN------VDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 174 (456)
Q Consensus 101 ~~vLVaTdv~~~Gidip~------v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~ 174 (456)
++|.|.+|...+|..++. +...|||.+|.+.. |....- ....++.-.+.++++|.
T Consensus 107 aDi~~~~D~~~~G~~i~~~Ak~mGAktFVh~sfprhms-~~~l~~------------------Rr~~M~~~C~~lGi~fv 167 (275)
T PF12683_consen 107 ADIVVNPDEISRGYTIVWAAKKMGAKTFVHYSFPRHMS-YELLAR------------------RRDIMEEACKDLGIKFV 167 (275)
T ss_dssp SSEEEE--HHHHHHHHHHHHHHTT-S-EEEEEETTGGG-SHHHHH------------------HHHHHHHHHHHCT--EE
T ss_pred cCeEeccchhhccHHHHHHHHHcCCceEEEEechhhcc-hHHHHH------------------HHHHHHHHHHHcCCeEE
Confidence 678999999999988764 35688998888765 333221 23667777888899998
Q ss_pred ecCCCCH
Q 012794 175 FVSPPVV 181 (456)
Q Consensus 175 ~~~~p~~ 181 (456)
....|.+
T Consensus 168 ~~taPDP 174 (275)
T PF12683_consen 168 EVTAPDP 174 (275)
T ss_dssp EEEE---
T ss_pred EEeCCCC
Confidence 8766653
No 242
>PRK13767 ATP-dependent helicase; Provisional
Probab=82.30 E-value=4 Score=46.65 Aligned_cols=69 Identities=14% Similarity=0.163 Sum_probs=49.8
Q ss_pred CcEEEEcCChHHHHHHHHHHHh-----------------cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccc-----
Q 012794 52 GKTIVFTQTKRDADEVSLALTS-----------------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV----- 109 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l~~~L~~-----------------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv----- 109 (456)
.++|+.+||++.+.++...|.. .+.+...||+.++.++.+.+.. ..+|||+|+-
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~----~p~IlVtTPE~L~~l 160 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKK----PPHILITTPESLAIL 160 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhC----CCCEEEecHHHHHHH
Confidence 3699999999999988765431 2457889999999998877765 5689999962
Q ss_pred cccc---cCcCccceEEe
Q 012794 110 AARG---LDIPNVDLIIH 124 (456)
Q Consensus 110 ~~~G---idip~v~~VI~ 124 (456)
+... -.+.++.+||.
T Consensus 161 l~~~~~~~~l~~l~~VVI 178 (876)
T PRK13767 161 LNSPKFREKLRTVKWVIV 178 (876)
T ss_pred hcChhHHHHHhcCCEEEE
Confidence 1111 13567888773
No 243
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=79.95 E-value=4 Score=45.95 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=38.9
Q ss_pred CcEEEEc-CChHHHHHHHHHHHh---c-------------------------CCEEEEeCCCCHHHHHHHHhcccCCCeE
Q 012794 52 GKTIVFT-QTKRDADEVSLALTS---I-------------------------IASEALHGDISQHQRERTLNGFRQGKFT 102 (456)
Q Consensus 52 ~~~IIF~-~t~~~a~~l~~~L~~---~-------------------------~~~~~lhg~~~~~~R~~~l~~Fr~g~~~ 102 (456)
.+.|||+ +|++.|+++++.+.+ . +.+..++|+.+...+...+.. ...
T Consensus 62 ~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~----~p~ 137 (844)
T TIGR02621 62 PRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPH----RPA 137 (844)
T ss_pred cceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCC----CCc
Confidence 4678877 999999999877752 1 447888999887766555443 568
Q ss_pred EEEec
Q 012794 103 VLVAT 107 (456)
Q Consensus 103 vLVaT 107 (456)
|||+|
T Consensus 138 IIVgT 142 (844)
T TIGR02621 138 VIVGT 142 (844)
T ss_pred EEEEC
Confidence 99999
No 244
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=79.29 E-value=2.9 Score=46.03 Aligned_cols=54 Identities=24% Similarity=0.431 Sum_probs=45.7
Q ss_pred HhcccCCCeEEEEeccccccccCcCccceE--------EecCCCCChhHHHHHhcccccCCC
Q 012794 93 LNGFRQGKFTVLVATDVAARGLDIPNVDLI--------IHYELPNDPETFVHRSGRTGRAGK 146 (456)
Q Consensus 93 l~~Fr~g~~~vLVaTdv~~~Gidip~v~~V--------I~~~~p~~~~~y~qr~GR~gR~g~ 146 (456)
-++|-+|+-.|-|-+.++..||-+..=..| |-..+||+.+.-||..|||+|.++
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQ 911 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQ 911 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccc
Confidence 357888998899999999999998755444 457899999999999999999874
No 245
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=77.54 E-value=6.1 Score=41.44 Aligned_cols=72 Identities=18% Similarity=0.237 Sum_probs=51.5
Q ss_pred CcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHH-HHHHHHhcccCCCeEEEEecc-------ccccccCcCc
Q 012794 52 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQH-QRERTLNGFRQGKFTVLVATD-------VAARGLDIPN 118 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~-~R~~~l~~Fr~g~~~vLVaTd-------v~~~Gidip~ 118 (456)
-++||.++|++.+.+++..+.. ++.+..+.|.-+-+ +..+....-....++|||||+ -.-.++|+..
T Consensus 216 LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~ 295 (620)
T KOG0350|consen 216 LRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKH 295 (620)
T ss_pred eEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhh
Confidence 4799999999999999998874 24455555554433 334444555556789999996 2357899998
Q ss_pred cceEE
Q 012794 119 VDLII 123 (456)
Q Consensus 119 v~~VI 123 (456)
+.++|
T Consensus 296 LrfLV 300 (620)
T KOG0350|consen 296 LRFLV 300 (620)
T ss_pred ceEEE
Confidence 88766
No 246
>PTZ00424 helicase 45; Provisional
Probab=76.57 E-value=16 Score=37.40 Aligned_cols=70 Identities=14% Similarity=0.232 Sum_probs=47.1
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccc-----c-ccccCcCcc
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----A-ARGLDIPNV 119 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv-----~-~~Gidip~v 119 (456)
..++||+++|++.+.++.+.+.. ...+..+.|+........ .+.+ ..+|+|+|+- + ...+.+..+
T Consensus 96 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~-~~~Ivv~Tp~~l~~~l~~~~~~l~~i 171 (401)
T PTZ00424 96 ACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDIN---KLKA-GVHMVVGTPGRVYDMIDKRHLRVDDL 171 (401)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHH---HHcC-CCCEEEECcHHHHHHHHhCCcccccc
Confidence 45799999999999999887763 134666778876544333 3333 3579999962 1 223567788
Q ss_pred ceEEe
Q 012794 120 DLIIH 124 (456)
Q Consensus 120 ~~VI~ 124 (456)
.+||.
T Consensus 172 ~lvVi 176 (401)
T PTZ00424 172 KLFIL 176 (401)
T ss_pred cEEEE
Confidence 88773
No 247
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=75.50 E-value=13 Score=41.26 Aligned_cols=62 Identities=13% Similarity=0.110 Sum_probs=48.3
Q ss_pred HHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccc
Q 012794 41 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 109 (456)
Q Consensus 41 L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv 109 (456)
|..++... .+.+++|.++|...|.+.++.+.. ++.+.++.++++.++|...+. .+|+++|+.
T Consensus 88 lpa~l~aL-~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y~------~dIvyGT~~ 154 (745)
T TIGR00963 88 LPAYLNAL-TGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYA------CDITYGTNN 154 (745)
T ss_pred HHHHHHHH-hCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhcC------CCEEEECCC
Confidence 33334444 357899999999999999988864 367899999999988776663 589999975
No 248
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=74.16 E-value=12 Score=41.05 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=43.7
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc
Q 012794 49 AKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 49 ~~~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
..+.+++|.++|+..|.+.++.+.. ++.+.++.|++++++|.... ..+|+++|+
T Consensus 142 l~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y------~~dIvygT~ 200 (656)
T PRK12898 142 LAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAY------GADITYCTN 200 (656)
T ss_pred hcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHc------CCCEEEECC
Confidence 3467999999999999999988874 36789999999987776654 357899984
No 249
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=72.59 E-value=3.7 Score=36.96 Aligned_cols=16 Identities=38% Similarity=1.259 Sum_probs=12.9
Q ss_pred cccCCCCCcCcCCCCC
Q 012794 441 CFNCGKSGHRASECPN 456 (456)
Q Consensus 441 ~~~c~~~gh~~~~~p~ 456 (456)
|+.||+.||+.+.|-|
T Consensus 103 ~~r~G~rg~~~r~~~~ 118 (195)
T KOG0107|consen 103 CYRCGERGHIGRNCKD 118 (195)
T ss_pred cccCCCcccccccccc
Confidence 8888888888888753
No 250
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=71.25 E-value=28 Score=28.53 Aligned_cols=72 Identities=29% Similarity=0.338 Sum_probs=47.8
Q ss_pred cccHHHHHHHHHHHHC---CCCcEEEEcCChHHHHHHHHHHHhc----CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEe
Q 012794 34 ATSKRTILSDLITVYA---KGGKTIVFTQTKRDADEVSLALTSI----IASEALHGDISQHQRERTLNGFRQGKFTVLVA 106 (456)
Q Consensus 34 ~~~k~~~L~~ll~~~~---~~~~~IIF~~t~~~a~~l~~~L~~~----~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVa 106 (456)
-.-|..++..++.... ...++||+|+++..++++.+.+... ..+..+++.....+..... .....|+++
T Consensus 10 G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~i~ 85 (144)
T cd00046 10 GSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKLL----SGKTDIVVG 85 (144)
T ss_pred CCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHHh----cCCCCEEEE
Confidence 3456555555554432 4579999999999999998888742 5577788876555544221 235677888
Q ss_pred ccc
Q 012794 107 TDV 109 (456)
Q Consensus 107 Tdv 109 (456)
|.-
T Consensus 86 t~~ 88 (144)
T cd00046 86 TPG 88 (144)
T ss_pred CcH
Confidence 864
No 251
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=69.99 E-value=17 Score=41.38 Aligned_cols=52 Identities=15% Similarity=0.082 Sum_probs=42.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
...++|.++|++.|.+.++.+.. ++.+.++.|+++..++...+ ..+|+|+|+
T Consensus 135 g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y------~~DIVygTP 191 (970)
T PRK12899 135 GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY------QCDVVYGTA 191 (970)
T ss_pred cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECC
Confidence 45689999999999999988863 36788999999998887554 268999996
No 252
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=69.69 E-value=20 Score=40.72 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=47.7
Q ss_pred HHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc
Q 012794 41 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 41 L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
|..++... .+..++|.++|...|.+.++.+.. ++.+.+++|+++..+|...+ ..+|+++|+
T Consensus 114 Lpa~~~al-~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y------~~dIvygT~ 179 (896)
T PRK13104 114 LPAYLNAI-SGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY------KADIVYGTN 179 (896)
T ss_pred HHHHHHHh-cCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh------CCCEEEECC
Confidence 33444433 456899999999999999998874 36789999999999887765 368999996
No 253
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=69.15 E-value=36 Score=33.75 Aligned_cols=123 Identities=15% Similarity=0.179 Sum_probs=58.2
Q ss_pred cccHHHHHHHHHHHH-----CC-CCcEEEEcCChHHHHHHHHHHH-hcCCEEEEeCCCCHHHHHHHH------------h
Q 012794 34 ATSKRTILSDLITVY-----AK-GGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTL------------N 94 (456)
Q Consensus 34 ~~~k~~~L~~ll~~~-----~~-~~~~IIF~~t~~~a~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l------------~ 94 (456)
.+.|+..|.+|+... .. .-++||.++..++.+.|-..|. +.+...-+.|.+...+....- .
T Consensus 94 tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~ 173 (297)
T PF11496_consen 94 TSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNS 173 (297)
T ss_dssp T-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S--------------
T ss_pred cCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCccccccccccccc
Confidence 357999999999877 22 3479999999999998888776 456666666655444333222 0
Q ss_pred cc-c--CCCeEEEEe-ccccccc----cCcCccceEEecCCCCChh-HHHHHhcccccCCCCceEEEeeCh
Q 012794 95 GF-R--QGKFTVLVA-TDVAARG----LDIPNVDLIIHYELPNDPE-TFVHRSGRTGRAGKEGTAILMFTS 156 (456)
Q Consensus 95 ~F-r--~g~~~vLVa-Tdv~~~G----idip~v~~VI~~~~p~~~~-~y~qr~GR~gR~g~~g~~i~~~~~ 156 (456)
.. . .-...|-++ |+-+... ++-..+++||-+|.-.++. ..+|.+=...|..+.-.+|.++..
T Consensus 174 ~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~~~~PiirLv~~ 244 (297)
T PF11496_consen 174 KKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRNRLCPIIRLVPS 244 (297)
T ss_dssp --------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH-------S--EEEEEET
T ss_pred ccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCCCCCcEEEEeeC
Confidence 00 0 113444444 4434332 3334778999999766533 355555333333223334444443
No 254
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=69.04 E-value=42 Score=37.16 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=74.4
Q ss_pred EEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHhcC--C-EEEE--------------------e----
Q 012794 29 AISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII--A-SEAL--------------------H---- 81 (456)
Q Consensus 29 ~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~~--~-~~~l--------------------h---- 81 (456)
..-+....|.-++..++... +.++||.++++..|.+|+..|+..+ . |..+ +
T Consensus 34 l~Gvtgs~kt~~~a~~~~~~--~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f~sy~d~y~pe~y~P~~d~~~~k~~~ 111 (655)
T TIGR00631 34 LLGVTGSGKTFTMANVIAQV--NRPTLVIAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKDAS 111 (655)
T ss_pred EECCCCcHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeeecccCCccccCCCccccccccCC
Confidence 34466778988888888765 4689999999999999999997542 2 3222 1
Q ss_pred -CCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCc----cceEEecCCCCChhHHHHHhc
Q 012794 82 -GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN----VDLIIHYELPNDPETFVHRSG 139 (456)
Q Consensus 82 -g~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~----v~~VI~~~~p~~~~~y~qr~G 139 (456)
..--...|..++..+..+.-.|+|||-.+.+++=-|. ..+.+..+-..+.+.++.+.=
T Consensus 112 ~~~~i~~~R~~al~~L~~~~~~ivVasv~~i~~l~~p~~~~~~~~~l~~G~~i~~~~l~~~Lv 174 (655)
T TIGR00631 112 INDEIERLRHSATRSLLERRDVIVVASVSCIYGLGSPEEYLKMVLHLEVGKEIDRRELLRRLV 174 (655)
T ss_pred CChHHHHHHHHHHHHHHhCCCeEEEEcHHHhcCCCCHHHHHhccEEEeCCCCcCHHHHHHHHH
Confidence 1112346788888887766668888865566655443 445666776667777655443
No 255
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=68.42 E-value=15 Score=28.83 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=32.0
Q ss_pred HHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCC
Q 012794 44 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 85 (456)
Q Consensus 44 ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~ 85 (456)
.+..+.+..++|+||.+-..+...+..|.. ++.+..|.|++.
T Consensus 44 ~~~~~~~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 44 RLNELPKDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred HHHhcCCCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 333445667999999987778888888875 568888899874
No 256
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=67.00 E-value=43 Score=38.26 Aligned_cols=121 Identities=16% Similarity=0.202 Sum_probs=72.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHH----h-c--CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-ccc----cccC---
Q 012794 51 GGKTIVFTQTKRDADEVSLALT----S-I--IASEALHGDISQHQRERTLNGFRQGKFTVLVATD-VAA----RGLD--- 115 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~----~-~--~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-v~~----~Gid--- 115 (456)
..++|++.||+..|..=.+.|. . . +.+..++|+.++.+|+.++.. ..+||++|+ ++. +..+
T Consensus 115 ~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~----pp~IllTNpdMLh~~llr~~~~~~ 190 (851)
T COG1205 115 SARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRN----PPDILLTNPDMLHYLLLRNHDAWL 190 (851)
T ss_pred CccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhC----CCCEEEeCHHHHHHHhccCcchHH
Confidence 3578999999887765444443 2 2 568889999999999866555 889999984 222 2211
Q ss_pred --cCccceEEe-----cCC--CCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCcee
Q 012794 116 --IPNVDLIIH-----YEL--PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 175 (456)
Q Consensus 116 --ip~v~~VI~-----~~~--p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~ 175 (456)
+.++.+||. |.- =.++...+-|.-|.-|.......++..+.+-..--+..++..+..++.
T Consensus 191 ~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~ 259 (851)
T COG1205 191 WLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEV 259 (851)
T ss_pred HHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCccee
Confidence 234555552 222 235666677777766655455555555544333334444445444443
No 257
>PRK00254 ski2-like helicase; Provisional
Probab=65.25 E-value=20 Score=40.18 Aligned_cols=82 Identities=22% Similarity=0.347 Sum_probs=54.4
Q ss_pred ccHHHHH-HHHHHHH-CCCCcEEEEcCChHHHHHHHHHHHh----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc
Q 012794 35 TSKRTIL-SDLITVY-AKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 35 ~~k~~~L-~~ll~~~-~~~~~~IIF~~t~~~a~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
.-|..+. ..++... ..+.++|+.+|+++.|.+.++.+.. ++.+..++|+.+...+ .+ +..+|+|+|+
T Consensus 50 sGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~--~~-----~~~~IiV~Tp 122 (720)
T PRK00254 50 SGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE--WL-----GKYDIIIATA 122 (720)
T ss_pred cHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh--hh-----ccCCEEEEcH
Confidence 4564433 2333332 3467999999999999999988763 4678899999875432 11 3568999994
Q ss_pred -----ccccc-cCcCccceEE
Q 012794 109 -----VAARG-LDIPNVDLII 123 (456)
Q Consensus 109 -----v~~~G-idip~v~~VI 123 (456)
++... ..+.++.+||
T Consensus 123 e~~~~ll~~~~~~l~~l~lvV 143 (720)
T PRK00254 123 EKFDSLLRHGSSWIKDVKLVV 143 (720)
T ss_pred HHHHHHHhCCchhhhcCCEEE
Confidence 22222 3467888877
No 258
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=64.25 E-value=71 Score=27.91 Aligned_cols=86 Identities=24% Similarity=0.367 Sum_probs=50.3
Q ss_pred cccHHHHHHH-HHHHHCC--CCcEEEEcCChHHHHHHHHHHHhcC------CEEEEeCCCCHHHHHHHHhcccCCCeEEE
Q 012794 34 ATSKRTILSD-LITVYAK--GGKTIVFTQTKRDADEVSLALTSII------ASEALHGDISQHQRERTLNGFRQGKFTVL 104 (456)
Q Consensus 34 ~~~k~~~L~~-ll~~~~~--~~~~IIF~~t~~~a~~l~~~L~~~~------~~~~lhg~~~~~~R~~~l~~Fr~g~~~vL 104 (456)
..-|...+.. ++..... ..++||.++|...+.++...+...+ ....+++... ...+..+.++...|+
T Consensus 34 GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~ 109 (201)
T smart00487 34 GSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSK----REQLRKLESGKTDIL 109 (201)
T ss_pred CCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcch----HHHHHHHhcCCCCEE
Confidence 4568774444 3343333 3689999999999998888877422 2334444433 223334444555889
Q ss_pred Eec-----cccccc-cCcCccceEE
Q 012794 105 VAT-----DVAARG-LDIPNVDLII 123 (456)
Q Consensus 105 VaT-----dv~~~G-idip~v~~VI 123 (456)
++| +..... ++...+.+||
T Consensus 110 ~~t~~~l~~~~~~~~~~~~~~~~iI 134 (201)
T smart00487 110 VTTPGRLLDLLENDLLELSNVDLVI 134 (201)
T ss_pred EeChHHHHHHHHcCCcCHhHCCEEE
Confidence 998 333332 3555565555
No 259
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=63.97 E-value=15 Score=35.22 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh
Q 012794 36 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73 (456)
Q Consensus 36 ~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~ 73 (456)
.++.....++..+..++..|.|+.|+..+.+.......
T Consensus 48 ~~l~~A~~~v~~~~~~~g~ILfVgTK~~a~~~V~~~A~ 85 (252)
T COG0052 48 ERLREAYKFLRRIAANGGKILFVGTKKQAQEPVKEFAE 85 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEechHHHHHHHHHHHH
Confidence 44555566666676668889999999999988777764
No 260
>PRK02362 ski2-like helicase; Provisional
Probab=63.11 E-value=14 Score=41.40 Aligned_cols=82 Identities=18% Similarity=0.269 Sum_probs=55.1
Q ss_pred ccHHHHH-HHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-
Q 012794 35 TSKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD- 108 (456)
Q Consensus 35 ~~k~~~L-~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd- 108 (456)
.-|..+. ..++..+.++.++|+.+||++.|.+.+..+.. ++.+..++|++..... .+ +..+|+|||+
T Consensus 50 SGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~-----~l--~~~~IiV~Tpe 122 (737)
T PRK02362 50 SGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE-----WL--GDNDIIVATSE 122 (737)
T ss_pred chHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc-----cc--CCCCEEEECHH
Confidence 4564432 34455555578999999999999999988874 3678888998765331 11 3468999994
Q ss_pred ----ccccc-cCcCccceEE
Q 012794 109 ----VAARG-LDIPNVDLII 123 (456)
Q Consensus 109 ----v~~~G-idip~v~~VI 123 (456)
++..+ ..+.++.+||
T Consensus 123 k~~~llr~~~~~l~~v~lvV 142 (737)
T PRK02362 123 KVDSLLRNGAPWLDDITCVV 142 (737)
T ss_pred HHHHHHhcChhhhhhcCEEE
Confidence 22222 3356788877
No 261
>KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=61.98 E-value=3.4 Score=40.05 Aligned_cols=17 Identities=59% Similarity=1.509 Sum_probs=15.7
Q ss_pred CcccCCCCCcCcCCCCC
Q 012794 440 ACFNCGKSGHRASECPN 456 (456)
Q Consensus 440 ~~~~c~~~gh~~~~~p~ 456 (456)
.||+|++.||.++|||.
T Consensus 94 ~c~~C~~~gH~~~~c~~ 110 (261)
T KOG4400|consen 94 ACFNCGEGGHIERDCPE 110 (261)
T ss_pred hhhhCCCCccchhhCCc
Confidence 49999999999999984
No 262
>PRK01172 ski2-like helicase; Provisional
Probab=61.20 E-value=21 Score=39.59 Aligned_cols=82 Identities=21% Similarity=0.250 Sum_probs=53.3
Q ss_pred ccHHHH-HHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-
Q 012794 35 TSKRTI-LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD- 108 (456)
Q Consensus 35 ~~k~~~-L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd- 108 (456)
.-|..+ +..+++....+.++|+.+|+++.|.+.++.+.+ ++.+..++|+...... .+ ...+|+|+|+
T Consensus 48 SGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~--~~-----~~~dIiv~Tpe 120 (674)
T PRK01172 48 AGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPD--FI-----KRYDVVILTSE 120 (674)
T ss_pred chHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChh--hh-----ccCCEEEECHH
Confidence 456543 233444444467899999999999999888763 4567778888754321 11 2458999996
Q ss_pred ----ccccc-cCcCccceEE
Q 012794 109 ----VAARG-LDIPNVDLII 123 (456)
Q Consensus 109 ----v~~~G-idip~v~~VI 123 (456)
++.+. ..+.++.+||
T Consensus 121 k~~~l~~~~~~~l~~v~lvV 140 (674)
T PRK01172 121 KADSLIHHDPYIINDVGLIV 140 (674)
T ss_pred HHHHHHhCChhHHhhcCEEE
Confidence 22222 3467788877
No 263
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=60.04 E-value=25 Score=26.40 Aligned_cols=59 Identities=20% Similarity=0.162 Sum_probs=38.7
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccc
Q 012794 54 TIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113 (456)
Q Consensus 54 ~IIF~~t~~~a~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~G 113 (456)
.||.|.....+..+.+.......+.++.|..........+..+... ..|+|++|--..|
T Consensus 2 ~l~ivEg~~da~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~-~~Iii~~D~D~~G 60 (76)
T smart00493 2 VLIIVEGPADAIALEKAGGFGGNVVALGGHLLKKEIIKLLKRLAKK-KEVILATDPDREG 60 (76)
T ss_pred EEEEEcCHHHHHHHHHhcCCCEEEEEEeeeecHHHHHHHHHHHhcC-CEEEEEcCCChhH
Confidence 5888888888888877665434556666665444555566665443 5789998854333
No 264
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=59.14 E-value=27 Score=30.47 Aligned_cols=82 Identities=20% Similarity=0.205 Sum_probs=51.5
Q ss_pred CcccHHHHHHHHHHH-HCCCCcEEEEcCChHHHHHHHHHHHhcC-CEEEEeCCCCHHHHHHHHhcccCCCeEEEEe-ccc
Q 012794 33 TATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTSII-ASEALHGDISQHQRERTLNGFRQGKFTVLVA-TDV 109 (456)
Q Consensus 33 ~~~~k~~~L~~ll~~-~~~~~~~IIF~~t~~~a~~l~~~L~~~~-~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVa-Tdv 109 (456)
....+..++..|+.. +..+.+++|+|.+.+.+++|-+.|-..- ...+=|+-.... . .....|+|+ ++.
T Consensus 10 ~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~--------~-~~~~PV~l~~~~~ 80 (142)
T PRK05728 10 TLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEG--------P-AAGQPVLLTWPGK 80 (142)
T ss_pred CchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCC--------C-CCCCCEEEEcCCC
Confidence 455688888888865 4668899999999999999999886421 111224321110 0 124578887 322
Q ss_pred cccccCcCccceEEecCC
Q 012794 110 AARGLDIPNVDLIIHYEL 127 (456)
Q Consensus 110 ~~~Gidip~v~~VI~~~~ 127 (456)
.+.+..+++||.+.
T Consensus 81 ----~~~~~~~~LinL~~ 94 (142)
T PRK05728 81 ----RNANHRDLLINLDG 94 (142)
T ss_pred ----CCCCCCcEEEECCC
Confidence 23445667888764
No 265
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=58.21 E-value=16 Score=29.16 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=31.9
Q ss_pred HHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCC
Q 012794 44 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 85 (456)
Q Consensus 44 ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~ 85 (456)
.+..+.+..++||+|.+-..+..++..|.. ++.+..|.|+|.
T Consensus 54 ~~~~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 54 ILDQLPDDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred HHhhCCCCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 344445678999999987777888888875 777778888873
No 266
>KOG4284 consensus DEAD box protein [Transcription]
Probab=57.68 E-value=48 Score=36.27 Aligned_cols=69 Identities=13% Similarity=0.210 Sum_probs=50.2
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh------cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----ccccc-cCcCc
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPN 118 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~~~G-idip~ 118 (456)
.-+.+|.++|++-|-++.+.+.+ ++.|.++-|+.+-++-..-| .+.+|+|.|+ +.+-+ +|+..
T Consensus 93 ~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl-----k~~rIvIGtPGRi~qL~el~~~n~s~ 167 (980)
T KOG4284|consen 93 HIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL-----KQTRIVIGTPGRIAQLVELGAMNMSH 167 (980)
T ss_pred cceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh-----hhceEEecCchHHHHHHHhcCCCccc
Confidence 45788999999999999887763 36788888987665433333 3467999996 33444 88888
Q ss_pred cceEEe
Q 012794 119 VDLIIH 124 (456)
Q Consensus 119 v~~VI~ 124 (456)
+++.|.
T Consensus 168 vrlfVL 173 (980)
T KOG4284|consen 168 VRLFVL 173 (980)
T ss_pred eeEEEe
Confidence 888773
No 267
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=56.94 E-value=39 Score=38.10 Aligned_cols=53 Identities=11% Similarity=0.118 Sum_probs=43.2
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCC-HHHHHHHHhcccCCCeEEEEecc
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDIS-QHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~-~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
.+..++|.++|...|.+.++.+.. ++.+..+.|+++ ..+|..+. ..+|+++|+
T Consensus 118 ~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~y------~~dIvygT~ 176 (790)
T PRK09200 118 EGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAIY------EADIIYTTN 176 (790)
T ss_pred cCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHhc------CCCEEEECC
Confidence 478999999999999998888763 367999999999 77777543 268999994
No 268
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=56.07 E-value=58 Score=29.58 Aligned_cols=67 Identities=9% Similarity=0.157 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHCCC-CcEEEEcCChHHHHHHHHHHHhc---CCEEEEeCCCCHHHHHHHHhcccCCCeEEE
Q 012794 38 RTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVL 104 (456)
Q Consensus 38 ~~~L~~ll~~~~~~-~~~IIF~~t~~~a~~l~~~L~~~---~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vL 104 (456)
.+++.++++..... .++-++-.+.+.++.+++.|.+. +.++..||-+++++.+.+++..+....+||
T Consensus 34 ~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil 104 (177)
T TIGR00696 34 PDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIV 104 (177)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEE
Confidence 56667777655333 35666667777888899999853 455556899988877777777766555443
No 269
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=55.52 E-value=34 Score=37.11 Aligned_cols=58 Identities=21% Similarity=0.313 Sum_probs=46.9
Q ss_pred CCcEEEEcCChHHHH-HHHHHHHhcCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc
Q 012794 51 GGKTIVFTQTKRDAD-EVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~-~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
.+-+||..|-...-+ ++......++.+.+|++.++..++..++..+..|.+++|.-++
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisP 115 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISP 115 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECc
Confidence 467888888766544 4444444678999999999999999999999999999997664
No 270
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=53.53 E-value=1.2e+02 Score=33.61 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=72.3
Q ss_pred EEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHhcC--C-EEEE--------------------eCCC--
Q 012794 30 ISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII--A-SEAL--------------------HGDI-- 84 (456)
Q Consensus 30 ~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~~--~-~~~l--------------------hg~~-- 84 (456)
.-+....|.-++..++... +.++||.+++...|.+++..|...+ . +..+ +-..
T Consensus 38 ~Gl~gs~ka~lia~l~~~~--~r~vLIVt~~~~~A~~l~~dL~~~~~~~~v~~f~s~~~~~~~~~~~P~~d~~~~~~~~~ 115 (652)
T PRK05298 38 LGVTGSGKTFTMANVIARL--QRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI 115 (652)
T ss_pred EcCCCcHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHHhcCCCeEEEeCChhhccCccccCCCCcccccccCCC
Confidence 3456677888888877654 4689999999999999999997532 1 2222 1111
Q ss_pred ---CHHHHHHHHhcccCCCeEEEEeccccccccCcCc----cceEEecCCCCChhHHHHHhcc
Q 012794 85 ---SQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN----VDLIIHYELPNDPETFVHRSGR 140 (456)
Q Consensus 85 ---~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~----v~~VI~~~~p~~~~~y~qr~GR 140 (456)
-..+|..++.++..+...|+|||-.+..++=-|. ..+.+..+-..+.+.++.+.=.
T Consensus 116 ~~~~~~~R~~~l~~L~~~~~~ivv~s~~al~~~~~~~~~~~~~~~l~~G~~i~~~~l~~~L~~ 178 (652)
T PRK05298 116 NEEIERLRHSATKSLLERRDVIVVASVSCIYGLGSPEEYLKMVLSLRVGQEIDRRELLRRLVD 178 (652)
T ss_pred ChHHHHHHHHHHHHHHhCCCEEEEEcHHHhcCCCCHHHHHhceEEEeCCCCcCHHHHHHHHHH
Confidence 1446888898888766667777754445544332 3456677777777777665443
No 271
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=52.83 E-value=3.2e+02 Score=29.29 Aligned_cols=129 Identities=15% Similarity=0.179 Sum_probs=74.2
Q ss_pred EEEEcCChHHHHHHHHHHHh---cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc---ccccccCcCccceEEecCC
Q 012794 54 TIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD---VAARGLDIPNVDLIIHYEL 127 (456)
Q Consensus 54 ~IIF~~t~~~a~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd---v~~~Gidip~v~~VI~~~~ 127 (456)
-|||++|.-.|-+.+..+-+ ++-+ .+|- ...-..++..|....++.+|.|| ++.-| |+- |--+++
T Consensus 115 PIvYTPTvG~acq~y~~i~r~p~Glfi-si~D---~Ghi~~~l~nWp~~~V~~IvVTDGerILGLG-DlG----~~GmgI 185 (582)
T KOG1257|consen 115 PIVYTPTVGLACQQYGLIFRRPQGLFI-SIKD---KGHIKQVLKNWPERNVKAIVVTDGERILGLG-DLG----VNGMGI 185 (582)
T ss_pred CeeecCcHHHHHHHhhhhhccCceeEE-Eecc---cchHHHHHHhCCccceeEEEEeCCCceeccc-ccc----cCcccc
Confidence 39999999988777776653 2212 2221 13456788888888999999997 33332 111 001223
Q ss_pred CC-ChhHHHHHhcccccCCCCceEEEeeC--hhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHH
Q 012794 128 PN-DPETFVHRSGRTGRAGKEGTAILMFT--SSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 196 (456)
Q Consensus 128 p~-~~~~y~qr~GR~gR~g~~g~~i~~~~--~~e~~~~~~ie~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l 196 (456)
|. ....|.-..|- ++..|.-++. .++...+.+=.-+++...+++.-+.-.+.+++.++.+.+..
T Consensus 186 pvgKL~Lyta~~GI-----~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~~~y 252 (582)
T KOG1257|consen 186 PVGKLALYTALGGI-----RPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVVQRY 252 (582)
T ss_pred eecHHHHHHHhcCC-----ChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHHHHh
Confidence 32 23344433332 3454443332 23334444445567777777777777777777777776655
No 272
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=52.75 E-value=51 Score=36.79 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=46.5
Q ss_pred HHHHHCCCCcEEEEcCChHHHHHHHHHHH--hcCCEEEEeCCCCHHHHHHHHhcccCC--CeEEEEecccccc
Q 012794 44 LITVYAKGGKTIVFTQTKRDADEVSLALT--SIIASEALHGDISQHQRERTLNGFRQG--KFTVLVATDVAAR 112 (456)
Q Consensus 44 ll~~~~~~~~~IIF~~t~~~a~~l~~~L~--~~~~~~~lhg~~~~~~R~~~l~~Fr~g--~~~vLVaTdv~~~ 112 (456)
+|......++-||.||+-..-..+.+.-+ -.+.+..+||. |.+|+++-..+.+. .++|||+|--++.
T Consensus 441 yLkq~g~~gpHLVVvPsSTleNWlrEf~kwCPsl~Ve~YyGS--q~ER~~lR~~i~~~~~~ydVllTTY~la~ 511 (941)
T KOG0389|consen 441 YLKQIGNPGPHLVVVPSSTLENWLREFAKWCPSLKVEPYYGS--QDERRELRERIKKNKDDYDVLLTTYNLAA 511 (941)
T ss_pred HHHHcCCCCCcEEEecchhHHHHHHHHHHhCCceEEEeccCc--HHHHHHHHHHHhccCCCccEEEEEeeccc
Confidence 33444557888999988654444433222 24788999998 78999988888776 7899999954443
No 273
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=52.55 E-value=4.6 Score=43.27 Aligned_cols=10 Identities=20% Similarity=0.215 Sum_probs=4.6
Q ss_pred HHHHHHHHHh
Q 012794 160 RTVRSLERDV 169 (456)
Q Consensus 160 ~~~~~ie~~~ 169 (456)
.++..+.+.+
T Consensus 264 kfv~y~~~kv 273 (556)
T PF05918_consen 264 KFVNYMCEKV 273 (556)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 4445554443
No 274
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=50.78 E-value=45 Score=32.21 Aligned_cols=69 Identities=20% Similarity=0.324 Sum_probs=47.0
Q ss_pred CcEEEEcCChHHHHHHHHHHHhc----CCEEEEeCC-CCHHHHHHHHhcccCCCeEEEEecc-----ccccc-cCcCccc
Q 012794 52 GKTIVFTQTKRDADEVSLALTSI----IASEALHGD-ISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNVD 120 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l~~~L~~~----~~~~~lhg~-~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~~~G-idip~v~ 120 (456)
..+||.|.+--.|-.|...|... ..++-|.+. |.-+++...++ ...+.|.|+|+ +++.| +.+..+.
T Consensus 127 P~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~---~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 127 PHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLK---KTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHH---hCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 35899999988888888888742 233334333 34555555554 35789999996 45555 7888888
Q ss_pred eEE
Q 012794 121 LII 123 (456)
Q Consensus 121 ~VI 123 (456)
+||
T Consensus 204 ~iv 206 (252)
T PF14617_consen 204 RIV 206 (252)
T ss_pred EEE
Confidence 766
No 275
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=50.46 E-value=7 Score=43.01 Aligned_cols=15 Identities=53% Similarity=1.460 Sum_probs=14.6
Q ss_pred cccCCCCCcCcCCCC
Q 012794 441 CFNCGKSGHRASECP 455 (456)
Q Consensus 441 ~~~c~~~gh~~~~~p 455 (456)
||.||+.||.+.||.
T Consensus 263 C~~cgq~gh~~~dc~ 277 (931)
T KOG2044|consen 263 CFLCGQTGHEAKDCE 277 (931)
T ss_pred chhhcccCCcHhhcC
Confidence 999999999999997
No 276
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=50.44 E-value=74 Score=28.58 Aligned_cols=69 Identities=10% Similarity=0.171 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHCCC-CcEEEEcCChHHHHHHHHHHHhcC---CEE-EEeCCCCHHHHHHHHhcccCCCeEEEE
Q 012794 37 KRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSII---ASE-ALHGDISQHQRERTLNGFRQGKFTVLV 105 (456)
Q Consensus 37 k~~~L~~ll~~~~~~-~~~IIF~~t~~~a~~l~~~L~~~~---~~~-~lhg~~~~~~R~~~l~~Fr~g~~~vLV 105 (456)
=.+++.+++...... .++-++-.+.+.++.++..|.+.+ .++ ..|+-++..+.+.+++..+....+||+
T Consensus 33 g~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~ 106 (172)
T PF03808_consen 33 GSDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVF 106 (172)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEE
Confidence 355666666654333 466666677777888899998643 344 456768888888998888776655543
No 277
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=49.47 E-value=1.4e+02 Score=34.62 Aligned_cols=83 Identities=17% Similarity=0.300 Sum_probs=55.4
Q ss_pred HHHHHhc--ccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccC--C-CCceEEEeeChhhHHHHH
Q 012794 89 RERTLNG--FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA--G-KEGTAILMFTSSQRRTVR 163 (456)
Q Consensus 89 R~~~l~~--Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~--g-~~g~~i~~~~~~e~~~~~ 163 (456)
+...... +++...++||.+|++-.|.|.|.+.. +-.|-|----..+|.+-||-|. + ++.-.|+.+........+
T Consensus 580 ~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~T-mYvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~gl~e~l~~ 658 (962)
T COG0610 580 KKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNT-LYVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRGLKEALKK 658 (962)
T ss_pred HhhhhhhhcCcCCCCCEEEEEccccccCCccccce-EEeccccccchHHHHHHHhccCCCCCCCCcEEEECcchHHHHHH
Confidence 3444445 34567899999999999999997764 4466667677889999999994 3 233344444444445555
Q ss_pred HHHHHhCCC
Q 012794 164 SLERDVGCK 172 (456)
Q Consensus 164 ~ie~~~~~~ 172 (456)
.+..+....
T Consensus 659 Al~~Y~~~~ 667 (962)
T COG0610 659 ALKLYSNEG 667 (962)
T ss_pred HHHHhhccc
Confidence 555554443
No 278
>COG4907 Predicted membrane protein [Function unknown]
Probab=49.17 E-value=15 Score=38.13 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=27.6
Q ss_pred hhHHHHHHHhhCCCCCCccccEEEeecCccceeeeecCHHHHHHHHh
Q 012794 267 ARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 313 (456)
Q Consensus 267 ~~~i~~~l~~~~~~~~~~ig~i~~~~~~~~~~~~~dv~~~~a~~~~~ 313 (456)
+.....+|++...+....+-.|.+.+++- +...+-.+++++++
T Consensus 488 W~aFKnfLsd~s~lke~~pesI~~W~~yl----VYatALGV~dkVvk 530 (595)
T COG4907 488 WQAFKNFLSDYSQLKEAKPESIHLWEQYL----VYATALGVSDKVVK 530 (595)
T ss_pred HHHHHHHHHhHHHHhhCCCcceehHhhhh----hhhhhhccHHHHHH
Confidence 44556778887777777788899988884 44433334444443
No 279
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=47.87 E-value=1e+02 Score=27.65 Aligned_cols=68 Identities=12% Similarity=0.223 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHCC-CCcEEEEcCChHHHHHHHHHHHhc---CCEEE-EeCCCCHHHHHHHHhcccCCCeEEE
Q 012794 37 KRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTSI---IASEA-LHGDISQHQRERTLNGFRQGKFTVL 104 (456)
Q Consensus 37 k~~~L~~ll~~~~~-~~~~IIF~~t~~~a~~l~~~L~~~---~~~~~-lhg~~~~~~R~~~l~~Fr~g~~~vL 104 (456)
=.+++..+++.... +.++-++-.+.+.++.+++.|.+. +.++. .|+-+...+...+++..+....+||
T Consensus 31 g~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv 103 (171)
T cd06533 31 GSDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADIL 103 (171)
T ss_pred cHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEE
Confidence 35666667766533 456777777888888888888853 44444 6788877777777777666555544
No 280
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=47.84 E-value=71 Score=36.23 Aligned_cols=63 Identities=13% Similarity=0.118 Sum_probs=48.3
Q ss_pred HHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc
Q 012794 39 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 39 ~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
.+|..++... .+..+-|.++|...|.+.++.+.. ++.+.++.++++..+|..++. .+|+++|+
T Consensus 111 a~lpa~l~aL-~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~------~dI~ygT~ 178 (830)
T PRK12904 111 ATLPAYLNAL-TGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYA------ADITYGTN 178 (830)
T ss_pred HHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC------CCeEEECC
Confidence 3344444444 356788999999999998888764 367899999999999888854 67999995
No 281
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=47.49 E-value=47 Score=28.78 Aligned_cols=80 Identities=19% Similarity=0.218 Sum_probs=40.8
Q ss_pred HHHHHHHHHH-HCCCCcEEEEcCChHHHHHHHHHHHhc-CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccC
Q 012794 38 RTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLD 115 (456)
Q Consensus 38 ~~~L~~ll~~-~~~~~~~IIF~~t~~~a~~l~~~L~~~-~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gid 115 (456)
...+..|+.. +..+.+++|+|++.+.++.|-+.|-.. -....=|+-.... ......|+|+++... ..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~i~~~~~~--~~ 83 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---------PAARQPVLITWDQEA--NP 83 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---------STT--SEEEE-TTS-----
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---------CCCCCeEEEecCccc--CC
Confidence 5777777764 456789999999999999999998642 1112223221110 111247899887643 22
Q ss_pred cCccceEEecCCC
Q 012794 116 IPNVDLIIHYELP 128 (456)
Q Consensus 116 ip~v~~VI~~~~p 128 (456)
.+..+++||.+..
T Consensus 84 ~~~~~vLinL~~~ 96 (137)
T PF04364_consen 84 NNHADVLINLSGE 96 (137)
T ss_dssp -S--SEEEE--SS
T ss_pred CCCCCEEEECCCC
Confidence 3346788887644
No 282
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=47.28 E-value=9.3 Score=39.82 Aligned_cols=17 Identities=35% Similarity=0.819 Sum_probs=15.5
Q ss_pred CcccCCCCCcCcCCCCC
Q 012794 440 ACFNCGKSGHRASECPN 456 (456)
Q Consensus 440 ~~~~c~~~gh~~~~~p~ 456 (456)
-|+.|+.-||+++||+.
T Consensus 287 ~c~~cg~~gH~~~dc~~ 303 (554)
T KOG0119|consen 287 VCKICGPLGHISIDCKV 303 (554)
T ss_pred cccccCCcccccccCCC
Confidence 39999999999999983
No 283
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=46.08 E-value=52 Score=28.69 Aligned_cols=45 Identities=11% Similarity=0.099 Sum_probs=34.1
Q ss_pred HHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cC-CEEEEeCCC
Q 012794 40 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDI 84 (456)
Q Consensus 40 ~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~-~~~~lhg~~ 84 (456)
.|...+..+....++||+|.+-..+..++..|.. ++ .+..|.|++
T Consensus 38 ~l~~~l~~l~~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~ 84 (145)
T cd01535 38 QLAQALEKLPAAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGT 84 (145)
T ss_pred HHHHHHHhcCCCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcH
Confidence 3444555555667999999998888888888874 44 789999996
No 284
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=45.14 E-value=73 Score=28.30 Aligned_cols=42 Identities=17% Similarity=0.145 Sum_probs=34.7
Q ss_pred cCcccHHHHHHHHHHH-HCCCCcEEEEcCChHHHHHHHHHHHh
Q 012794 32 TTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS 73 (456)
Q Consensus 32 ~~~~~k~~~L~~ll~~-~~~~~~~IIF~~t~~~a~~l~~~L~~ 73 (456)
...+.+...+..|+.. +..+.+++|.|...+.++.|-+.|=.
T Consensus 9 L~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWt 51 (154)
T PRK06646 9 TSDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWT 51 (154)
T ss_pred eCCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcC
Confidence 3666789999998875 46678999999999999999888864
No 285
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=44.85 E-value=52 Score=25.72 Aligned_cols=43 Identities=14% Similarity=0.241 Sum_probs=31.8
Q ss_pred HHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cC-CEEEEeCCC
Q 012794 42 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDI 84 (456)
Q Consensus 42 ~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~-~~~~lhg~~ 84 (456)
...+..+.+..++||+|.+-..+..++..|.. ++ .+..|.|++
T Consensus 47 ~~~~~~~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~ 91 (96)
T cd01444 47 DDWLGDLDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGF 91 (96)
T ss_pred HHHHhhcCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCH
Confidence 34444555678999999998888888888875 55 466777775
No 286
>PF12614 RRF_GI: Ribosome recycling factor ; InterPro: IPR022253 This family of proteins is found in bacteria and viruses. Proteins in this family are approximately 130 amino acids in length. There are two conserved sequence motifs: LPS and LKR. Overproduction of ribosome recycling factor (RRF) reduces tna operon expression and increases the rate of cleavage of TnaC-tRNA(2)(Pro), relieving the growth inhibition associated with plasmid-mediated tnaC overexpression.
Probab=43.38 E-value=98 Score=26.55 Aligned_cols=86 Identities=19% Similarity=0.321 Sum_probs=41.5
Q ss_pred CChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCceecCCCCHHHHH--HHHHHHHHHHHhcCCcchhhh
Q 012794 129 NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL--ESSAEQVVATLNGVHPESVEF 206 (456)
Q Consensus 129 ~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~~~~p~~~~i~--~~~~~~~~~~l~~~~~~~~~~ 206 (456)
.+..+++||+|+. ....++.+....+...+++--.-.-.+. ...+..+.+.+.....+...+
T Consensus 7 I~LpSlIHRig~~----------------~~k~~ka~A~q~~CeLKRVRRSRnWql~Ge~~~l~~~~~~lk~~~~~~~~~ 70 (128)
T PF12614_consen 7 IPLPSLIHRIGRE----------------AVKQAKALARQHGCELKRVRRSRNWQLSGEADQLQSFLDQLKAEDYEEFQF 70 (128)
T ss_pred eccHHHHHHhhHH----------------HHHHHHHHHHHhCchHHHHHHhhhhHHhhhHHHHHHHHHHHHhcchHHHHH
Confidence 3567899999983 2234555555555555443222221111 123444455554444445555
Q ss_pred hHHHHHHHHhhcC--HHHHHHHHHHH
Q 012794 207 FTPTAQRLIEEKG--TDALAAALAQL 230 (456)
Q Consensus 207 ~~~~~~~ll~~~~--~~~~a~ala~~ 230 (456)
....++.-|..+. .+-+...|+.|
T Consensus 71 li~kie~~L~~~~dkle~l~~~L~~L 96 (128)
T PF12614_consen 71 LIKKIEAALLQHSDKLEPLEDKLARL 96 (128)
T ss_pred HHHHHHHHhcccccccchHHHHHHHH
Confidence 5555554443332 23444444444
No 287
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=43.11 E-value=48 Score=37.45 Aligned_cols=67 Identities=18% Similarity=0.270 Sum_probs=48.5
Q ss_pred cEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccc------cc-c-ccCcCcc
Q 012794 53 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AA-R-GLDIPNV 119 (456)
Q Consensus 53 ~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv------~~-~-Gidip~v 119 (456)
.+|=.+|-|.....+-..|.. ++.+.+-|||++|.+|.+...+ -..|||+|+- .. + -=.+.+|
T Consensus 75 ~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~----PPdILiTTPEsL~lll~~~~~r~~l~~v 150 (814)
T COG1201 75 YALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKN----PPHILITTPESLAILLNSPKFRELLRDV 150 (814)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCC----CCcEEEeChhHHHHHhcCHHHHHHhcCC
Confidence 456666778777777777752 5788999999999999877666 7789999961 11 1 1235678
Q ss_pred ceEE
Q 012794 120 DLII 123 (456)
Q Consensus 120 ~~VI 123 (456)
.+||
T Consensus 151 r~VI 154 (814)
T COG1201 151 RYVI 154 (814)
T ss_pred cEEE
Confidence 8887
No 288
>PF13245 AAA_19: Part of AAA domain
Probab=41.53 E-value=40 Score=25.90 Aligned_cols=40 Identities=30% Similarity=0.386 Sum_probs=30.7
Q ss_pred cCcccHHHHHHHHHHHHC-C----CCcEEEEcCChHHHHHHHHHH
Q 012794 32 TTATSKRTILSDLITVYA-K----GGKTIVFTQTKRDADEVSLAL 71 (456)
Q Consensus 32 ~~~~~k~~~L~~ll~~~~-~----~~~~IIF~~t~~~a~~l~~~L 71 (456)
.+-.-|..++..++..+. . +.+++|.++|+..+++|.+.|
T Consensus 18 ~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 18 PPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 455778877666665442 1 578999999999999999988
No 289
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=41.12 E-value=1.2e+02 Score=34.10 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=41.2
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHH--hcCCEEEEeCCCCHHHHHHHHhccc-CCCeEEEEec
Q 012794 49 AKGGKTIVFTQTKRDADEVSLALT--SIIASEALHGDISQHQRERTLNGFR-QGKFTVLVAT 107 (456)
Q Consensus 49 ~~~~~~IIF~~t~~~a~~l~~~L~--~~~~~~~lhg~~~~~~R~~~l~~Fr-~g~~~vLVaT 107 (456)
...++-||.||--....-+.+.-+ -.+.+.++||+ +++|....+.+- .+.+.|+|+|
T Consensus 215 ~~~GPfLVi~P~StL~NW~~Ef~rf~P~l~~~~~~Gd--k~eR~~~~r~~~~~~~fdV~iTs 274 (971)
T KOG0385|consen 215 GIPGPFLVIAPKSTLDNWMNEFKRFTPSLNVVVYHGD--KEERAALRRDIMLPGRFDVCITS 274 (971)
T ss_pred CCCCCeEEEeeHhhHHHHHHHHHHhCCCcceEEEeCC--HHHHHHHHHHhhccCCCceEeeh
Confidence 346899999986554444433322 25789999999 688888877765 4588999998
No 290
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=40.99 E-value=38 Score=26.13 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=29.6
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHh-cCC-EEEEeCCCC
Q 012794 49 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 85 (456)
Q Consensus 49 ~~~~~~IIF~~t~~~a~~l~~~L~~-~~~-~~~lhg~~~ 85 (456)
.+..++||||.+-..+..++..|.. ++. +..|.|++.
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 3567899999998888888888885 555 788888874
No 291
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=40.27 E-value=41 Score=28.07 Aligned_cols=43 Identities=12% Similarity=0.160 Sum_probs=32.3
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHh-cC--CEEEEeCCCCHHHHHHH
Q 012794 49 AKGGKTIVFTQTKRDADEVSLALTS-II--ASEALHGDISQHQRERT 92 (456)
Q Consensus 49 ~~~~~~IIF~~t~~~a~~l~~~L~~-~~--~~~~lhg~~~~~~R~~~ 92 (456)
.++.++||||.+-..+...+..|.. ++ .+..+.|+| +..+.++
T Consensus 70 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~-~~W~~~~ 115 (122)
T cd01526 70 DKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGL-KAWADKV 115 (122)
T ss_pred CCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchH-HHHHHHh
Confidence 4567899999997778888888885 67 588899998 3344433
No 292
>PHA02653 RNA helicase NPH-II; Provisional
Probab=38.49 E-value=66 Score=35.76 Aligned_cols=68 Identities=9% Similarity=-0.017 Sum_probs=45.1
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh--c------CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceE
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS--I------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 122 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~--~------~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~V 122 (456)
..+++|-+||++.|.+++..+.+ + ..+.+.+|+++..+... ..+ ...|||+|..+. -.++..+.+|
T Consensus 222 ~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t---~~k--~~~Ilv~T~~L~-l~~L~~v~~V 295 (675)
T PHA02653 222 ERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDELINT---NPK--PYGLVFSTHKLT-LNKLFDYGTV 295 (675)
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHHhhc---ccC--CCCEEEEeCccc-ccccccCCEE
Confidence 35899999999999998888764 1 24678899988422211 111 457999985321 1256678888
Q ss_pred Ee
Q 012794 123 IH 124 (456)
Q Consensus 123 I~ 124 (456)
|.
T Consensus 296 VI 297 (675)
T PHA02653 296 II 297 (675)
T ss_pred Ec
Confidence 73
No 293
>COG4907 Predicted membrane protein [Function unknown]
Probab=38.33 E-value=25 Score=36.55 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=9.9
Q ss_pred cccccCcCccceEEecCCCC
Q 012794 110 AARGLDIPNVDLIIHYELPN 129 (456)
Q Consensus 110 ~~~Gidip~v~~VI~~~~p~ 129 (456)
..|--.-.+-.+++|..+|.
T Consensus 289 ~~r~p~~~~kp~~vn~i~~g 308 (595)
T COG4907 289 FKRKPKSKNKPIKVNRILPG 308 (595)
T ss_pred eeecCCcCCCCcEEEEecCC
Confidence 33333333445666666663
No 294
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=38.00 E-value=2.5e+02 Score=28.58 Aligned_cols=125 Identities=21% Similarity=0.260 Sum_probs=77.4
Q ss_pred eEEEEEcCcccHHHHHHHHHHHH-CCCCcEEEEcCChHHHHHHHHHHHhc---CCEEEEeCCCCHHHHHHHHhcccCCCe
Q 012794 26 KLYAISTTATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKF 101 (456)
Q Consensus 26 ~~~~~~~~~~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~a~~l~~~L~~~---~~~~~lhg~~~~~~R~~~l~~Fr~g~~ 101 (456)
++..-.+...-|.+++...+... ..+..+.|-.+..+.|.+|+..|+.. ..+..|||+-++. |+ .
T Consensus 118 ~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~--------fr---~ 186 (441)
T COG4098 118 DTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSY--------FR---A 186 (441)
T ss_pred cEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchh--------cc---c
Confidence 34444566678888888877643 55778999999999999999999863 5689999997654 33 4
Q ss_pred EEEEeccc-cccccCcCccceEEe--cC-CCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHH
Q 012794 102 TVLVATDV-AARGLDIPNVDLIIH--YE-LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 164 (456)
Q Consensus 102 ~vLVaTdv-~~~Gidip~v~~VI~--~~-~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ 164 (456)
.++|||.. +-|=- ...+++|. .| +|.+-+..+|-+=+-.|- ..|..|.+.........++
T Consensus 187 plvVaTtHQLlrFk--~aFD~liIDEVDAFP~~~d~~L~~Av~~ark-~~g~~IylTATp~k~l~r~ 250 (441)
T COG4098 187 PLVVATTHQLLRFK--QAFDLLIIDEVDAFPFSDDQSLQYAVKKARK-KEGATIYLTATPTKKLERK 250 (441)
T ss_pred cEEEEehHHHHHHH--hhccEEEEeccccccccCCHHHHHHHHHhhc-ccCceEEEecCChHHHHHH
Confidence 57777742 22211 12333332 22 677777777766665553 2344444433333333333
No 295
>PHA02558 uvsW UvsW helicase; Provisional
Probab=37.00 E-value=1.6e+02 Score=31.35 Aligned_cols=80 Identities=15% Similarity=0.130 Sum_probs=47.9
Q ss_pred CcccHHHHHHHHHHHH-CCC-CcEEEEcCChHHHHHHHHHHHhc-----CCEEEEeCCCCHHHHHHHHhcccCCCeEEEE
Q 012794 33 TATSKRTILSDLITVY-AKG-GKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLV 105 (456)
Q Consensus 33 ~~~~k~~~L~~ll~~~-~~~-~~~IIF~~t~~~a~~l~~~L~~~-----~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLV 105 (456)
...-|..+...++..+ ... .++||+|+|++.++++.+.|.+. ..+..+.++.... ....|+|
T Consensus 138 TGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-----------~~~~I~V 206 (501)
T PHA02558 138 TSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-----------TDAPIVV 206 (501)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-----------CCCCEEE
Confidence 3446766555444322 222 38999999999999999998752 1233444443211 2457999
Q ss_pred ecc--ccccc-cCcCccceEE
Q 012794 106 ATD--VAARG-LDIPNVDLII 123 (456)
Q Consensus 106 aTd--v~~~G-idip~v~~VI 123 (456)
+|. +.... ..+.++.+||
T Consensus 207 aT~qsl~~~~~~~~~~~~~iI 227 (501)
T PHA02558 207 STWQSAVKQPKEWFDQFGMVI 227 (501)
T ss_pred eeHHHHhhchhhhccccCEEE
Confidence 993 22222 2356777777
No 296
>COG1204 Superfamily II helicase [General function prediction only]
Probab=36.10 E-value=92 Score=35.17 Aligned_cols=98 Identities=28% Similarity=0.310 Sum_probs=62.6
Q ss_pred cHHH-HHHHHHHHHCC-CCcEEEEcCChHHHHHHHHHHH---h-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEec--
Q 012794 36 SKRT-ILSDLITVYAK-GGKTIVFTQTKRDADEVSLALT---S-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT-- 107 (456)
Q Consensus 36 ~k~~-~L~~ll~~~~~-~~~~IIF~~t~~~a~~l~~~L~---~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaT-- 107 (456)
-|.. ++..+++...+ +.++|--||++..|.+.++.++ . ++++..++|+++-.. +.+ ...+|+|+|
T Consensus 59 GKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~-~~l------~~~~ViVtT~E 131 (766)
T COG1204 59 GKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDD-ERL------ARYDVIVTTPE 131 (766)
T ss_pred chHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcccch-hhh------ccCCEEEEchH
Confidence 4533 33344454443 4799999999999999999998 3 588999999976433 111 256899999
Q ss_pred --cccccc--cCcCccceEEecC-----CC---CChhHHHHHhcc
Q 012794 108 --DVAARG--LDIPNVDLIIHYE-----LP---NDPETFVHRSGR 140 (456)
Q Consensus 108 --dv~~~G--idip~v~~VI~~~-----~p---~~~~~y~qr~GR 140 (456)
|.+-|- .-+.+|++||.=+ -+ ...++.+.|.=+
T Consensus 132 K~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~ 176 (766)
T COG1204 132 KLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRR 176 (766)
T ss_pred HhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHh
Confidence 344433 2245777777321 11 246677776633
No 297
>PF12353 eIF3g: Eukaryotic translation initiation factor 3 subunit G ; InterPro: IPR024675 At least eleven different protein factors are involved in initiation of protein synthesis in eukaryotes. Binding of initiator tRNA and mRNA to the 40S subunit requires the presence of the translation initiation factors eIF-2 and eIF-3, with eIF-3 being particularly important for 80S ribosome dissociation and mRNA binding []. eIF-3 is the most complex translation inititation factor, consisting of about 13 putative subunits and having a molecular weight of between 550 - 700 kDa in mammalian cells. Subunits are designated eIF-3a - eIF-3m; the large number of subunits means that the interactions between the individual subunits that make up the eIF-3 complex are complex and varied. Subunit G is required for eIF3 integrity. This entry represents a domain of approximately 130 amino acids in length found at the N terminus of eukaryotic translation initiation factor 3 subunit G. This domain is commonly found in association with the RNA recognition domain PF00076 from PFAM.
Probab=35.93 E-value=19 Score=30.99 Aligned_cols=16 Identities=38% Similarity=0.877 Sum_probs=13.9
Q ss_pred CcccCCCCCcCcCCCCC
Q 012794 440 ACFNCGKSGHRASECPN 456 (456)
Q Consensus 440 ~~~~c~~~gh~~~~~p~ 456 (456)
.|+.|+ .-|+..-||.
T Consensus 108 ~CR~Ck-GdH~T~~CPy 123 (128)
T PF12353_consen 108 KCRICK-GDHWTSKCPY 123 (128)
T ss_pred EeCCCC-CCcccccCCc
Confidence 499996 7799999994
No 298
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=35.66 E-value=46 Score=32.50 Aligned_cols=51 Identities=18% Similarity=0.142 Sum_probs=30.0
Q ss_pred EeCCCCHHHHHHHHhccc---C-CCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCC
Q 012794 80 LHGDISQHQRERTLNGFR---Q-GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 145 (456)
Q Consensus 80 lhg~~~~~~R~~~l~~Fr---~-g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g 145 (456)
+.+-++..+|....++.+ + ...+|.|. +|.---+.+++.|..|.-+....|
T Consensus 39 ~t~~Ls~~e~~~Leq~l~~L~~kt~~QiaVv---------------~vpSt~g~~IE~ya~rlfd~W~lG 93 (271)
T COG1512 39 LTGTLSAAERGALEQQLADLEQKTGAQIAVV---------------TVPSTGGETIEQYATRLFDKWKLG 93 (271)
T ss_pred ccccCChhhHHHHHHHHHHHHhccCCeEEEE---------------EecCCCCCCHHHHHHHHHHhcCCC
Confidence 345567776666655543 2 23344332 222222578999999999886666
No 299
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=35.65 E-value=1.9e+02 Score=27.96 Aligned_cols=69 Identities=14% Similarity=0.221 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHCCCCcEEEEc-CChHHHHHHHHHHHhc---CCEEEEe-CCCCHHHHHHHHhcccCCCeEEEE
Q 012794 37 KRTILSDLITVYAKGGKTIVFT-QTKRDADEVSLALTSI---IASEALH-GDISQHQRERTLNGFRQGKFTVLV 105 (456)
Q Consensus 37 k~~~L~~ll~~~~~~~~~IIF~-~t~~~a~~l~~~L~~~---~~~~~lh-g~~~~~~R~~~l~~Fr~g~~~vLV 105 (456)
=.++...|++.....++.|-|. .+...+++.+..|.+. +.++..| |=.+..+.+.++++......+||+
T Consensus 93 G~Dl~~~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~pdil~ 166 (253)
T COG1922 93 GTDLVEALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASGPDILL 166 (253)
T ss_pred hHHHHHHHHHHhCccCceEEEecCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhcCCCEEE
Confidence 4666777777665554444444 5566667777888753 4455555 878888878888887776655543
No 300
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=34.81 E-value=73 Score=25.08 Aligned_cols=36 Identities=11% Similarity=0.007 Sum_probs=28.0
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHh-cC-CEEEEeCCC
Q 012794 49 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDI 84 (456)
Q Consensus 49 ~~~~~~IIF~~t~~~a~~l~~~L~~-~~-~~~~lhg~~ 84 (456)
.++.++||+|.+-..+...+..|.. ++ .+..|.|+|
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 91 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGT 91 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCH
Confidence 4567899999997778888888864 55 577788886
No 301
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=34.62 E-value=96 Score=25.08 Aligned_cols=36 Identities=11% Similarity=0.010 Sum_probs=26.9
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHh-cCC--EEEEeCCCC
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTS-IIA--SEALHGDIS 85 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~-~~~--~~~lhg~~~ 85 (456)
++.+++|||.+-..+...+..|.. ++. +..|.|+|.
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~ 103 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQ 103 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHH
Confidence 356899999887666667777774 663 778889874
No 302
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=34.35 E-value=4.1e+02 Score=25.15 Aligned_cols=84 Identities=11% Similarity=0.152 Sum_probs=58.1
Q ss_pred CCCcEEEEcCC------------hHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccC---CCeEEEEeccccccc
Q 012794 50 KGGKTIVFTQT------------KRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ---GKFTVLVATDVAARG 113 (456)
Q Consensus 50 ~~~~~IIF~~t------------~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~---g~~~vLVaTdv~~~G 113 (456)
+.+.+||+.+. ...++.|+..|++ ++.+ .++-+++..+-.++++.|.+ ....++|+. +++-|
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V-~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~-~~sHG 85 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEV-EVKNNLTAEEILEELKEFASPDHSDSDSFVCV-ILSHG 85 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEE-EEeCCCCHHHHHHHHHHHHhccCCCCCeeEEE-ECCCC
Confidence 34567777763 4678999999986 6654 57889999999999998874 233344333 56667
Q ss_pred cCcCccceEEecC-CCCChhHHHHHhc
Q 012794 114 LDIPNVDLIIHYE-LPNDPETFVHRSG 139 (456)
Q Consensus 114 idip~v~~VI~~~-~p~~~~~y~qr~G 139 (456)
.. +.|+-.| .+.+++.+++...
T Consensus 86 ~~----~~l~~~D~~~v~l~~i~~~f~ 108 (243)
T cd00032 86 EE----GGIYGTDGDVVPIDEITSLFN 108 (243)
T ss_pred CC----CEEEEecCcEEEHHHHHHhhc
Confidence 54 6666666 5667777777664
No 303
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=34.13 E-value=57 Score=28.74 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=26.3
Q ss_pred HHHHHHH-HHCCCCcEEEEcCChHHHHHHHHHHHh
Q 012794 40 ILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTS 73 (456)
Q Consensus 40 ~L~~ll~-~~~~~~~~IIF~~t~~~a~~l~~~L~~ 73 (456)
+|.++++ .+.+..++||..+|+..++++++.|..
T Consensus 21 vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~ 55 (148)
T PF07652_consen 21 VLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKG 55 (148)
T ss_dssp HHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTT
T ss_pred ccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhc
Confidence 5666665 346678999999999999999999974
No 304
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=33.43 E-value=5.2e+02 Score=26.12 Aligned_cols=58 Identities=16% Similarity=0.079 Sum_probs=32.7
Q ss_pred EEEEEeecCccccCCCChhHHHHHHHhhCCCCCCccccEEEeecCc----cceeeeecC-HHHHHHHHhhcC
Q 012794 250 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDR----VQGAVFDLP-EEIAKELLNKQI 316 (456)
Q Consensus 250 ~t~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ig~i~~~~~~~----~~~~~~dv~-~~~a~~~~~~~~ 316 (456)
++|+|..= ...++..+|..++..... |-.++|+.+.. .--+||+-. .+.|+++|+...
T Consensus 194 ~~lfV~nL----p~~vtee~L~~~F~~fG~-----V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln 256 (346)
T TIGR01659 194 TNLYVTNL----PRTITDDQLDTIFGKYGQ-----IVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALN 256 (346)
T ss_pred ceeEEeCC----CCcccHHHHHHHHHhcCC-----EEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 46776432 345788888888875543 44566654421 012566653 455666666543
No 305
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=33.14 E-value=2.9e+02 Score=26.21 Aligned_cols=83 Identities=12% Similarity=0.157 Sum_probs=57.6
Q ss_pred CCCcEEEEcCC-----------hHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCC----CeEEEEeccccccc
Q 012794 50 KGGKTIVFTQT-----------KRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG----KFTVLVATDVAARG 113 (456)
Q Consensus 50 ~~~~~IIF~~t-----------~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g----~~~vLVaTdv~~~G 113 (456)
+.+-+||+.+. ...++.|++.|.+ ++.+ .++-+++..+-+++++.|.+. ..+++|+. +++-|
T Consensus 7 p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V-~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~-~~sHG 84 (241)
T smart00115 7 PRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEV-HVKNNLTAEEMLEELKEFAERPEHSDSDSFVCV-LLSHG 84 (241)
T ss_pred CCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHhccccCCCCEEEEE-EcCCC
Confidence 34678888875 4589999999986 6654 578899999999999999763 24455544 66667
Q ss_pred cCcCccceEEecCC-CCChhHHHHHh
Q 012794 114 LDIPNVDLIIHYEL-PNDPETFVHRS 138 (456)
Q Consensus 114 idip~v~~VI~~~~-p~~~~~y~qr~ 138 (456)
. .+.|+-.|- +.+++.++...
T Consensus 85 ~----~~~l~~~D~~~v~l~~i~~~f 106 (241)
T smart00115 85 E----EGGIYGTDHSPLPLDEIFSLF 106 (241)
T ss_pred C----CCeEEEecCCEEEHHHHHHhc
Confidence 3 256665554 55666666555
No 306
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=33.13 E-value=1.1e+02 Score=29.43 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=36.7
Q ss_pred CeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHhc
Q 012794 24 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI 74 (456)
Q Consensus 24 ~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~ 74 (456)
.++...+-.+. -.++|.++.+.+.+++.+++|++|.++++.+.+.|.+.
T Consensus 163 ~vDav~LDmp~--PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~ 211 (256)
T COG2519 163 DVDAVFLDLPD--PWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRER 211 (256)
T ss_pred ccCEEEEcCCC--hHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc
Confidence 55555554444 34556666666677899999999999999999999863
No 307
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=33.08 E-value=45 Score=36.92 Aligned_cols=78 Identities=22% Similarity=0.337 Sum_probs=60.3
Q ss_pred ccHHHHHHHHHHHH-CCCCcEEEEcCChHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHhcccC---CCeEEEEecccc
Q 012794 35 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQ---GKFTVLVATDVA 110 (456)
Q Consensus 35 ~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~a~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~---g~~~vLVaTdv~ 110 (456)
..|+.+|..+++.. ..+.+++||..-....+.|...+........+-|..+-..|+.+++.|.. ..+-.|.+|-..
T Consensus 614 ~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~ 693 (696)
T KOG0383|consen 614 SGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEGKYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAG 693 (696)
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccCcceeccCCccchhhhhhccccCCCCccceEEEeecccc
Confidence 35666666666554 45679999999999999998888742377788999999999999999983 356678888765
Q ss_pred cc
Q 012794 111 AR 112 (456)
Q Consensus 111 ~~ 112 (456)
+-
T Consensus 694 g~ 695 (696)
T KOG0383|consen 694 GL 695 (696)
T ss_pred cC
Confidence 43
No 308
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=32.91 E-value=1.1e+02 Score=24.27 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=27.9
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHh-cC-CEEEEeCCCCH
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDISQ 86 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~-~~-~~~~lhg~~~~ 86 (456)
++.+++|||++-..+...+..|.+ ++ .+..|.|++..
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~ 95 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDA 95 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHH
Confidence 467899999997777777777774 55 47788888643
No 309
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.87 E-value=1.9e+02 Score=25.71 Aligned_cols=71 Identities=20% Similarity=0.351 Sum_probs=46.4
Q ss_pred cceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHHhc
Q 012794 119 VDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG 198 (456)
Q Consensus 119 v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~ 198 (456)
++-|+.++.+..+.+|=|-+|-. .|..+..++ .+..+++.+..
T Consensus 55 v~gv~~~g~~~~~PsYC~~CGkp------------------------------------yPWt~~~L~-aa~el~ee~ee 97 (158)
T PF10083_consen 55 VEGVFGLGGHYEAPSYCHNCGKP------------------------------------YPWTENALE-AANELIEEDEE 97 (158)
T ss_pred cCCeeeeCCCCCCChhHHhCCCC------------------------------------CchHHHHHH-HHHHHHHHhhc
Confidence 44467777778888999988752 233333333 34445566777
Q ss_pred CCcchhhhhHHHHHHHHhhcCHHHHHHH
Q 012794 199 VHPESVEFFTPTAQRLIEEKGTDALAAA 226 (456)
Q Consensus 199 ~~~~~~~~~~~~~~~ll~~~~~~~~a~a 226 (456)
+.++..+.|...+.+|+.+.....+|+.
T Consensus 98 Ls~deke~~~~sl~dL~~d~PkT~vA~~ 125 (158)
T PF10083_consen 98 LSPDEKEQFKESLPDLTKDTPKTKVAAT 125 (158)
T ss_pred CCHHHHHHHHhhhHHHhhcCCccHHHHH
Confidence 7888888888888888877544444443
No 310
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=32.59 E-value=5.2e+02 Score=27.26 Aligned_cols=76 Identities=13% Similarity=0.212 Sum_probs=47.2
Q ss_pred ccHHHHHHHHHHHH-CCCCcEEEEcCC----hHHHHHHHHHHHhcCC--EEEEe-CCCCHHHHHHHHhcccCCCeEEEEe
Q 012794 35 TSKRTILSDLITVY-AKGGKTIVFTQT----KRDADEVSLALTSIIA--SEALH-GDISQHQRERTLNGFRQGKFTVLVA 106 (456)
Q Consensus 35 ~~k~~~L~~ll~~~-~~~~~~IIF~~t----~~~a~~l~~~L~~~~~--~~~lh-g~~~~~~R~~~l~~Fr~g~~~vLVa 106 (456)
++..++=.+++..+ .-+++.||..|| ..++.+|+..|...|. +.++. -.|.+++-..+|+. ||.-
T Consensus 163 e~Y~eAEervI~ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~-------vLyE 235 (492)
T PF09547_consen 163 ENYVEAEERVIEELKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEE-------VLYE 235 (492)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHH-------HHhc
Confidence 34555555555544 236788999987 5678899999986544 44443 56777777666655 3333
Q ss_pred ccccccccCcC
Q 012794 107 TDVAARGLDIP 117 (456)
Q Consensus 107 Tdv~~~Gidip 117 (456)
-++.+-.+++|
T Consensus 236 FPV~Ei~~~lP 246 (492)
T PF09547_consen 236 FPVSEININLP 246 (492)
T ss_pred CCceEEEeecc
Confidence 34444445555
No 311
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=32.17 E-value=1.4e+02 Score=26.30 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=48.8
Q ss_pred HHHHHHHH-HCCCCcEEEEcCChHHHHHHHHHHHhc-CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcC
Q 012794 40 ILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 117 (456)
Q Consensus 40 ~L~~ll~~-~~~~~~~IIF~~t~~~a~~l~~~L~~~-~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip 117 (456)
++..|+.. +..+.+++|-|.+.+.++.|-+.|-.. -...+=|+-.. +....+. .|+|++.-- --+-+
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~~~~sFiPH~~~~--------e~~~~~q-PIli~~~~~--~pn~~ 85 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTFSAESFIPHNLAG--------EPPPAGQ-PILIAWPGG--NPNSA 85 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhccchhcccCCccCC--------CCCCCCC-CEEEEcCCC--CCCCC
Confidence 77777754 467889999999999999999998642 11122243211 1222223 488886431 23455
Q ss_pred ccceEEecCCCC
Q 012794 118 NVDLIIHYELPN 129 (456)
Q Consensus 118 ~v~~VI~~~~p~ 129 (456)
.+++|||.--+.
T Consensus 86 ~~~~lInl~d~~ 97 (144)
T COG2927 86 RVDLLINLADEF 97 (144)
T ss_pred ceeEEEeccccC
Confidence 677888765443
No 312
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=31.74 E-value=79 Score=25.73 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=28.9
Q ss_pred HHCCCCcEEEEcCCh--HHHHHHHHHHHh-cCCEEEEeCCCC
Q 012794 47 VYAKGGKTIVFTQTK--RDADEVSLALTS-IIASEALHGDIS 85 (456)
Q Consensus 47 ~~~~~~~~IIF~~t~--~~a~~l~~~L~~-~~~~~~lhg~~~ 85 (456)
.+.+..++||||++- ..+..++..|.. ++.+..|.|++.
T Consensus 60 ~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~ 101 (110)
T cd01521 60 KLDKEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLD 101 (110)
T ss_pred cCCCCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHH
Confidence 345678899999975 367777777774 677888888873
No 313
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=31.72 E-value=1.2e+02 Score=24.78 Aligned_cols=45 Identities=20% Similarity=0.135 Sum_probs=30.9
Q ss_pred HHHHHHHHH--CCCCcEEEEcCChHHHHHHHHHHHh-cC-CEEEEeCCC
Q 012794 40 ILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDI 84 (456)
Q Consensus 40 ~L~~ll~~~--~~~~~~IIF~~t~~~a~~l~~~L~~-~~-~~~~lhg~~ 84 (456)
.+..++... .+..++||||++-..+..++..|.. ++ .+..+-|++
T Consensus 65 ~~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 113 (118)
T cd01449 65 ELRALFAALGITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSW 113 (118)
T ss_pred HHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChH
Confidence 344444443 3567899999997777788888874 55 466777775
No 314
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=31.41 E-value=1.9e+02 Score=32.00 Aligned_cols=40 Identities=18% Similarity=0.212 Sum_probs=30.1
Q ss_pred HHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEE
Q 012794 39 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEAL 80 (456)
Q Consensus 39 ~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~l 80 (456)
.++..|++.+ ..++||.+++.-.+++||+.+.+ +++++-|
T Consensus 444 ~IVyhl~~~~--~~~VLvcApSNiAVDqLaeKIh~tgLKVvRl 484 (935)
T KOG1802|consen 444 TIVYHLARQH--AGPVLVCAPSNIAVDQLAEKIHKTGLKVVRL 484 (935)
T ss_pred HHHHHHHHhc--CCceEEEcccchhHHHHHHHHHhcCceEeee
Confidence 3444455543 57999999999999999999985 6665555
No 315
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=30.93 E-value=1e+02 Score=24.84 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=31.6
Q ss_pred HHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCC-EEEEeCCCC
Q 012794 41 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 85 (456)
Q Consensus 41 L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~-~~~lhg~~~ 85 (456)
|...+..+....+++|+|.+-..+...+..|.. ++. +..|.|++.
T Consensus 48 l~~~~~~~~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T PRK00162 48 LGAFMRQADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFE 94 (108)
T ss_pred HHHHHHhcCCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHH
Confidence 344444455677899999887777777777874 554 777888863
No 316
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=30.81 E-value=2.8e+02 Score=28.98 Aligned_cols=24 Identities=8% Similarity=0.026 Sum_probs=17.2
Q ss_pred CCCChhHHHHHHHhhCCCCCCccc
Q 012794 263 GFMSARSVMGFLSDVYPTAADEIG 286 (456)
Q Consensus 263 ~~~~~~~i~~~l~~~~~~~~~~ig 286 (456)
...++.+|-.++.....+....|-
T Consensus 298 ~da~~~~l~~~Fk~FG~Ik~~~I~ 321 (419)
T KOG0116|consen 298 PDATPAELEEVFKQFGPIKEGGIQ 321 (419)
T ss_pred CCCCHHHHHHHHhhcccccccceE
Confidence 357788888888888777665443
No 317
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=30.43 E-value=91 Score=26.24 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=28.0
Q ss_pred HCCCCcEEEEcC-ChHHHHHHHHHHHh-cCCEEEEeCCCC
Q 012794 48 YAKGGKTIVFTQ-TKRDADEVSLALTS-IIASEALHGDIS 85 (456)
Q Consensus 48 ~~~~~~~IIF~~-t~~~a~~l~~~L~~-~~~~~~lhg~~~ 85 (456)
+.+..++||||. +-..+..++..|.. ++.+..|.|++.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~ 122 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYK 122 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHH
Confidence 345678999996 44556666777774 778888999974
No 318
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=30.39 E-value=94 Score=35.90 Aligned_cols=57 Identities=19% Similarity=0.162 Sum_probs=46.7
Q ss_pred CcEEEEcCChHHHHHHHHHH-HhcCCEEEEeCCCCHHHHHHHHhcccCC--CeEEEEecc
Q 012794 52 GKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQG--KFTVLVATD 108 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l~~~L-~~~~~~~~lhg~~~~~~R~~~l~~Fr~g--~~~vLVaTd 108 (456)
+-+||..+-....+.....| ...+.+..||+.++..+|..+++.+.++ .++||-.|+
T Consensus 305 gitvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtP 364 (941)
T KOG0351|consen 305 GVTVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTP 364 (941)
T ss_pred CceEEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCH
Confidence 34667777777766655556 4579999999999999999999999999 899998885
No 319
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=30.33 E-value=2.1e+02 Score=32.26 Aligned_cols=61 Identities=8% Similarity=0.097 Sum_probs=41.2
Q ss_pred HHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCC-----CCHHHHHHHHhcccCCCeEEEEecc
Q 012794 41 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGD-----ISQHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 41 L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~-----~~~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
|..++... .+..++|.|+|+..|.+.++.+.. ++.+.+++++ +.+.++..+. ...|+++|+
T Consensus 102 Lpa~l~aL-~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y------~~dIvygTp 172 (762)
T TIGR03714 102 MPLYLNAL-TGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIY------NSDIVYTTN 172 (762)
T ss_pred HHHHHHhh-cCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhC------CCCEEEECc
Confidence 33333333 456899999999999999888753 3566666554 5555555442 367899996
No 320
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=30.27 E-value=1.3e+02 Score=30.69 Aligned_cols=20 Identities=10% Similarity=0.318 Sum_probs=11.1
Q ss_pred CcEEEEcCChHHHHHHHHHH
Q 012794 52 GKTIVFTQTKRDADEVSLAL 71 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l~~~L 71 (456)
.++||+.+|++.|.++.+..
T Consensus 95 ~qalilaPtreLa~qi~~v~ 114 (397)
T KOG0327|consen 95 TQALILAPTRELAQQIQKVV 114 (397)
T ss_pred HHHHHhcchHHHHHHHHHHH
Confidence 35566666666555555433
No 321
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=30.18 E-value=5.3e+02 Score=25.18 Aligned_cols=81 Identities=21% Similarity=0.326 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHCCCCcEEEEcCCh-HHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecccccc-c
Q 012794 37 KRTILSDLITVYAKGGKTIVFTQTK-RDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR-G 113 (456)
Q Consensus 37 k~~~L~~ll~~~~~~~~~IIF~~t~-~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~-G 113 (456)
..++|.+.+..+...+.+|||.+-+ +++++|++.+.- .-.-.++||.+..-. .. .|+-+++|-.+...+ =
T Consensus 165 N~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir-----~~--~Gkk~~~ies~~s~eeL 237 (300)
T COG4152 165 NVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIR-----RS--FGKKRLVIESDLSLEEL 237 (300)
T ss_pred hHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHH-----Hh--cCCceEEEeccCchHHH
Confidence 4677777777777779999999864 668888887752 223466788852221 12 256677887766555 3
Q ss_pred cCcCccceEEe
Q 012794 114 LDIPNVDLIIH 124 (456)
Q Consensus 114 idip~v~~VI~ 124 (456)
-++|.|..+..
T Consensus 238 ~~ipgi~~~~~ 248 (300)
T COG4152 238 ANIPGILKITE 248 (300)
T ss_pred hcCCCceeeee
Confidence 45666655443
No 322
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=30.18 E-value=2.5e+02 Score=26.87 Aligned_cols=67 Identities=10% Similarity=0.156 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHCC-CCcEEEEcCChHHHHHHHHHHHhc--CCEE-EEeCCCCHHHHHHHHhcccCCCeEEE
Q 012794 38 RTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTSI--IASE-ALHGDISQHQRERTLNGFRQGKFTVL 104 (456)
Q Consensus 38 ~~~L~~ll~~~~~-~~~~IIF~~t~~~a~~l~~~L~~~--~~~~-~lhg~~~~~~R~~~l~~Fr~g~~~vL 104 (456)
.+++.++++.... +.++-++-.+...++++++.|.+. +.++ .+||=+.+++.+.+++.......+||
T Consensus 91 ~dl~~~ll~~~~~~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil 161 (243)
T PRK03692 91 ADLWEALMARAGKEGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASGAKIV 161 (243)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 5566666655433 345555556677788888888753 4433 45677777777777777666555544
No 323
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=30.10 E-value=7.8e+02 Score=27.13 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=14.8
Q ss_pred CCChhHHHHHHHh-hCCCCCCccccEE
Q 012794 264 FMSARSVMGFLSD-VYPTAADEIGKIH 289 (456)
Q Consensus 264 ~~~~~~i~~~l~~-~~~~~~~~ig~i~ 289 (456)
.+.+|.|.=+|+. .+..+-.+||+.-
T Consensus 553 i~~aRqiAMYL~r~lt~~Sl~~IG~~F 579 (617)
T PRK14086 553 LVTARQIAMYLCRELTDLSLPKIGQQF 579 (617)
T ss_pred cchHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 4567777544444 3555666677543
No 324
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=30.03 E-value=1e+02 Score=25.51 Aligned_cols=37 Identities=5% Similarity=0.015 Sum_probs=27.8
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHh-cCC-EEEEeCCCC
Q 012794 49 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 85 (456)
Q Consensus 49 ~~~~~~IIF~~t~~~a~~l~~~L~~-~~~-~~~lhg~~~ 85 (456)
.+..++||||.+-..+...+..|.. ++. +..+.+++.
T Consensus 62 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~ 100 (117)
T cd01522 62 GKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFE 100 (117)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCcee
Confidence 4678899999997778788888875 554 666777764
No 325
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=29.18 E-value=83 Score=24.83 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=28.0
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHh-cC-CEEEEeCCC
Q 012794 49 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDI 84 (456)
Q Consensus 49 ~~~~~~IIF~~t~~~a~~l~~~L~~-~~-~~~~lhg~~ 84 (456)
.+..+++|+|++-..+..++..|.+ ++ .+..+.|++
T Consensus 52 ~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~ 89 (99)
T cd01527 52 VGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGL 89 (99)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCH
Confidence 4567999999997777788888874 45 577788886
No 326
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=29.07 E-value=72 Score=33.19 Aligned_cols=58 Identities=22% Similarity=0.298 Sum_probs=46.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCC--CeEEEEecc
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG--KFTVLVATD 108 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g--~~~vLVaTd 108 (456)
.+-+|||.+-...+..-...|.. ...+..|.+.|+..+|.+++-.+..- .+++|--|+
T Consensus 61 ~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITP 121 (641)
T KOG0352|consen 61 GGITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITP 121 (641)
T ss_pred CCeEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEch
Confidence 35789999988777665556654 67889999999999999999998764 578887775
No 327
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=28.32 E-value=68 Score=31.32 Aligned_cols=8 Identities=38% Similarity=0.501 Sum_probs=3.7
Q ss_pred eEEEEecc
Q 012794 101 FTVLVATD 108 (456)
Q Consensus 101 ~~vLVaTd 108 (456)
+=+||+++
T Consensus 101 vLLlVa~~ 108 (271)
T COG1512 101 VLLLVAMN 108 (271)
T ss_pred EEEEEEcC
Confidence 33455543
No 328
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=27.77 E-value=31 Score=36.17 Aligned_cols=17 Identities=53% Similarity=1.363 Sum_probs=15.8
Q ss_pred CcccCCCCCcCcCCCCC
Q 012794 440 ACFNCGKSGHRASECPN 456 (456)
Q Consensus 440 ~~~~c~~~gh~~~~~p~ 456 (456)
.|.+||..||..=|||+
T Consensus 263 ~c~~cg~~~H~q~~cp~ 279 (554)
T KOG0119|consen 263 ACRNCGSTGHKQYDCPG 279 (554)
T ss_pred cccccCCCccccccCCc
Confidence 49999999999999995
No 329
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=27.45 E-value=27 Score=34.08 Aligned_cols=17 Identities=41% Similarity=1.324 Sum_probs=15.5
Q ss_pred CcccCCCCCcCcCCCCC
Q 012794 440 ACFNCGKSGHRASECPN 456 (456)
Q Consensus 440 ~~~~c~~~gh~~~~~p~ 456 (456)
-||.||+-||.=..||.
T Consensus 178 ~CyRCGqkgHwIqnCpT 194 (427)
T COG5222 178 VCYRCGQKGHWIQNCPT 194 (427)
T ss_pred eEEecCCCCchhhcCCC
Confidence 39999999999999994
No 330
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=27.11 E-value=39 Score=27.19 Aligned_cols=60 Identities=18% Similarity=0.288 Sum_probs=38.5
Q ss_pred EEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCH------------HHHHHHHhcccCCCeEEEEeccccccc
Q 012794 54 TIVFTQTKRDADEVSLALTS-IIASEALHGDISQ------------HQRERTLNGFRQGKFTVLVATDVAARG 113 (456)
Q Consensus 54 ~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~------------~~R~~~l~~Fr~g~~~vLVaTdv~~~G 113 (456)
.||.+.....+..+++.|.. .+.+....|.+.. ..+.+.+.+.-...-.|+||||.=..|
T Consensus 1 ~liIvE~ps~a~~i~~~l~~~~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~iiiatD~D~EG 73 (100)
T PF01751_consen 1 ELIIVEKPSDAKAIAKALGGEEYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLLKKADEIIIATDPDREG 73 (100)
T ss_dssp EEEEESSHHHHHHHHHHSSTTTEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHHHSCSEEEEEC-SSHHH
T ss_pred CEEEEeCHHHHHHHHHHcCCCCEEEEEeCCcccccccccccccccccccchhhHHHhhhccEeeecCCCChHH
Confidence 47889999999999998873 3556666665421 122444444434456899999976655
No 331
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=27.04 E-value=2.6e+02 Score=32.12 Aligned_cols=65 Identities=9% Similarity=-0.009 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccc
Q 012794 38 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 109 (456)
Q Consensus 38 ~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv 109 (456)
..+|..++... .+..+.|.++|.-.|.+=++.+.. ++.+.++.+++++.+|..++. .+|+++|..
T Consensus 111 vA~l~a~l~al-~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~------~dI~YGT~~ 180 (913)
T PRK13103 111 VGTLAVYLNAL-SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA------ADITYGTNN 180 (913)
T ss_pred HHHHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc------CCEEEEccc
Confidence 44445555444 578899999998877777776653 467899999999999998886 678888854
No 332
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=26.66 E-value=84 Score=24.99 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=26.9
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHh-cCC-EEEEeCCCC
Q 012794 49 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 85 (456)
Q Consensus 49 ~~~~~~IIF~~t~~~a~~l~~~L~~-~~~-~~~lhg~~~ 85 (456)
.++.++||+|.+=..+...+..|.. ++. +..|.|++.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 4567899999986666667777764 664 777888763
No 333
>COG4371 Predicted membrane protein [Function unknown]
Probab=25.78 E-value=1.4e+02 Score=28.65 Aligned_cols=55 Identities=22% Similarity=0.179 Sum_probs=0.0
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCC
Q 012794 347 RDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDDEDGFSS----SRGGRSFRSGN 405 (456)
Q Consensus 347 ~~~~~~~g~~~~~~~~~~g~~~gg~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~ 405 (456)
+..++|=|+++|...++.. ++.++++-.||+++.|.-+.++++. +.+++++++++
T Consensus 47 arSGGriGGgSfraps~~s----r~YS~~gpsGGgY~gg~Y~GGGfgfPfiip~~G~GGGfgG 105 (334)
T COG4371 47 ARSGGRIGGGSFRAPSGYS----RGYSGGGPSGGGYSGGGYSGGGFGFPFIIPGGGGGGGFGG 105 (334)
T ss_pred HhhCCCccCCCCCCCCCCC----CCcCCCCCCCCCCCCCCCCCCCcCcCeEeccCCcCCcccc
No 334
>cd00188 TOPRIM Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA, type IIA and type IIB topoisomerases, bacterial DnaG-type primases, small primase-like proteins from bacteria and archaea, OLD family nucleases from bacterial and archaea, and bacterial DNA repair proteins of the RecR/M family. This domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases and in strand joining in topoisomerases and, as a general acid in strand cleavage by topisomerases and nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=25.50 E-value=2e+02 Score=20.76 Aligned_cols=60 Identities=23% Similarity=0.138 Sum_probs=34.8
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecccccccc
Q 012794 54 TIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 114 (456)
Q Consensus 54 ~IIF~~t~~~a~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gi 114 (456)
.+|+|....++..+.........+..+.|.........+...++ ....|++++|.=..|.
T Consensus 2 ~viivEg~~d~~~l~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-~~~~v~i~~D~D~~g~ 61 (83)
T cd00188 2 KLIIVEGPSDALALAQAGGYGGAVVALGGHALNKTRELLKRLLG-EAKEVIIATDADREGE 61 (83)
T ss_pred EEEEEecHHHHHHHHHHcCCCEEEEEEccEEcHHHHHHHHHHhc-CCCEEEEEcCCChhHH
Confidence 47888888888877776554345555555544322233333332 2577888887644443
No 335
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=25.36 E-value=4.5e+02 Score=22.79 Aligned_cols=84 Identities=11% Similarity=0.065 Sum_probs=51.3
Q ss_pred HHHHHHHHHH---CCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecccccccc
Q 012794 39 TILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 114 (456)
Q Consensus 39 ~~L~~ll~~~---~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gi 114 (456)
..+.+|++.+ ..++++.|+-.+....+-|+..|.+ +..+...|....+ .++. .+ ..+|+|+.--...-|
T Consensus 13 ~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~-l~~~----v~--~ADIVvsAtg~~~~i 85 (140)
T cd05212 13 KAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQ-LQSK----VH--DADVVVVGSPKPEKV 85 (140)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcC-HHHH----Hh--hCCEEEEecCCCCcc
Confidence 3445556555 3467899999999999999999984 6778888865432 1222 22 345555432222334
Q ss_pred CcC---ccceEEecCCCC
Q 012794 115 DIP---NVDLIIHYELPN 129 (456)
Q Consensus 115 dip---~v~~VI~~~~p~ 129 (456)
+-. .=.+||++++..
T Consensus 86 ~~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 86 PTEWIKPGATVINCSPTK 103 (140)
T ss_pred CHHHcCCCCEEEEcCCCc
Confidence 432 224677777665
No 336
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=25.35 E-value=1.2e+02 Score=22.81 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=28.0
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHh-c-CCEEEEeCCC
Q 012794 49 AKGGKTIVFTQTKRDADEVSLALTS-I-IASEALHGDI 84 (456)
Q Consensus 49 ~~~~~~IIF~~t~~~a~~l~~~L~~-~-~~~~~lhg~~ 84 (456)
.+..++||+|.....+..++..|.. + ..+..|-|++
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~ 85 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGM 85 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCCh
Confidence 4568999999998888889998885 3 4566777775
No 337
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=25.00 E-value=1.6e+02 Score=27.29 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=40.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcCCEEEEeCCCCHH--------HHHHHHhcccCCCe-EEEEeccccccc
Q 012794 51 GGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQH--------QRERTLNGFRQGKF-TVLVATDVAARG 113 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~~~~~~~lhg~~~~~--------~R~~~l~~Fr~g~~-~vLVaTdv~~~G 113 (456)
+..+|..+.+.+++..+.+.=.-.=.-.+|||-+++- .-...+++..++.+ .|++||+.-..|
T Consensus 78 d~~~icVVe~p~Dv~a~E~~~~f~G~YhVL~G~lspl~gigpe~l~i~~L~~Rl~~~~~~EvIlAtnpTvEG 149 (198)
T COG0353 78 DKSQLCVVEEPKDVLALEKTGEFRGLYHVLGGLLSPLDGIGPEDLNIDELLQRLAEGSIKEVILATNPTVEG 149 (198)
T ss_pred CCceEEEEcchHHHHHHHHhcccCeeEEEecCccCcccCCCcccccHHHHHHHHhcCCCceEEEecCCCccc
Confidence 4567888888888776644322011245667655443 33566778888888 999999865555
No 338
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=24.60 E-value=2.1e+02 Score=27.61 Aligned_cols=57 Identities=12% Similarity=0.128 Sum_probs=37.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc
Q 012794 52 GKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
.=+|+|++.....+.+...|..+..+++-.-+++.++.+++.+.-+...+.|+++.+
T Consensus 70 DvVIdfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~N 126 (266)
T TIGR00036 70 DVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPN 126 (266)
T ss_pred CEEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECc
Confidence 346667766666666666666676666655578888777776665655566776654
No 339
>PLN02160 thiosulfate sulfurtransferase
Probab=24.36 E-value=1.5e+02 Score=25.41 Aligned_cols=37 Identities=11% Similarity=0.002 Sum_probs=28.8
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHh-cCC-EEEEeCCCC
Q 012794 49 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 85 (456)
Q Consensus 49 ~~~~~~IIF~~t~~~a~~l~~~L~~-~~~-~~~lhg~~~ 85 (456)
.+..++|+||.+=..+...+..|.. ++. +..|.|+|.
T Consensus 79 ~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~ 117 (136)
T PLN02160 79 NPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYL 117 (136)
T ss_pred CCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHH
Confidence 4567899999998888888888875 664 666778863
No 340
>COG4029 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.17 E-value=4.5e+02 Score=22.41 Aligned_cols=44 Identities=23% Similarity=0.377 Sum_probs=31.8
Q ss_pred cCCCChhHHHHHHHhhCCCCCCccccEEEeecCccceeeeecCHHHHHHHHhh
Q 012794 262 RGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNK 314 (456)
Q Consensus 262 ~~~~~~~~i~~~l~~~~~~~~~~ig~i~~~~~~~~~~~~~dv~~~~a~~~~~~ 314 (456)
...++|.+++..|..... -+.|.+.+ -|++++-|++.+.++.++
T Consensus 14 sa~vsp~elv~~l~~~~~-------PvtiKeTC--fGaii~G~Ed~v~klver 57 (142)
T COG4029 14 SAGVSPKELVQKLLELSP-------PVTIKETC--FGAIIDGPEDEVRKLVER 57 (142)
T ss_pred ccCcChHHHHHHHHhcCC-------CeEeeeee--eeeeecCcHHHHHHHHHH
Confidence 457999999998876432 13343333 379999999999888876
No 341
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=24.06 E-value=2.3e+02 Score=23.14 Aligned_cols=34 Identities=9% Similarity=0.167 Sum_probs=25.3
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCC
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 84 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~ 84 (456)
+.++||||.+-..+...+..|.. ++..+.+.|++
T Consensus 60 ~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~ 94 (104)
T PRK10287 60 NDTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGL 94 (104)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCCeEEecCCH
Confidence 45799999997778888888874 66655556774
No 342
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=23.83 E-value=99 Score=24.26 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=25.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCC
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 84 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~ 84 (456)
+.++|+||.+=..+...+..|.. ++.+..|.|++
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~ 90 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQMGWEVYVLEGGL 90 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcH
Confidence 56899999986666677777764 66776777886
No 343
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=23.74 E-value=2.3e+02 Score=27.25 Aligned_cols=66 Identities=15% Similarity=0.279 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHhcCCEEEEe-----CCCCHHHHHHHHhcccCCCeEEEEecc
Q 012794 36 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALH-----GDISQHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 36 ~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~~~~~~lh-----g~~~~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
.++....++|..+.. ..-|+|+.|+..+..+...+.....+.++. |-++.. +...|+ ..++||.||
T Consensus 56 ~~L~~Aa~~i~~i~~-~~~Il~Vstr~~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~----~~~~f~--~P~llIV~D 126 (249)
T PTZ00254 56 EKLKLAARVIAAIEN-PADVVVVSSRPYGQRAVLKFAQYTGASAIAGRFTPGTFTNQ----IQKKFM--EPRLLIVTD 126 (249)
T ss_pred HHHHHHHHHHHHHhC-CCcEEEEEcCHHHHHHHHHHHHHhCCeEECCcccCCCCCCc----cccccC--CCCEEEEeC
Confidence 455555666665644 444778999988887776666433333332 333322 123453 455777776
No 344
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=23.73 E-value=1.2e+02 Score=23.76 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=25.7
Q ss_pred CCCcEEEEcCC--hHHHHHHHHHHHh-cC-CEEEEeCCCC
Q 012794 50 KGGKTIVFTQT--KRDADEVSLALTS-II-ASEALHGDIS 85 (456)
Q Consensus 50 ~~~~~IIF~~t--~~~a~~l~~~L~~-~~-~~~~lhg~~~ 85 (456)
+..++||||.+ +..+..++..|.. ++ .+..|.|+|.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 36789999998 5556677777764 44 5777888863
No 345
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=23.24 E-value=1.7e+02 Score=24.00 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=27.0
Q ss_pred CCCCcEEEEcCC-hHHHHHHHHHHHh-cCC-EEEEeCCCC
Q 012794 49 AKGGKTIVFTQT-KRDADEVSLALTS-IIA-SEALHGDIS 85 (456)
Q Consensus 49 ~~~~~~IIF~~t-~~~a~~l~~~L~~-~~~-~~~lhg~~~ 85 (456)
.+..++||||.+ -..+..++..|.. ++. +..|-|++.
T Consensus 77 ~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~ 116 (122)
T cd01448 77 SNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQ 116 (122)
T ss_pred CCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 356789999998 4677777777764 554 777778873
No 346
>COG5179 TAF1 Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=23.21 E-value=37 Score=36.61 Aligned_cols=18 Identities=44% Similarity=1.095 Sum_probs=15.1
Q ss_pred CCCcccCCCCCcCcCC--CC
Q 012794 438 GGACFNCGKSGHRASE--CP 455 (456)
Q Consensus 438 ~~~~~~c~~~gh~~~~--~p 455 (456)
-+.|-+|||-|||-.. ||
T Consensus 937 tr~C~nCGQvGHmkTNK~CP 956 (968)
T COG5179 937 TRTCGNCGQVGHMKTNKACP 956 (968)
T ss_pred ceecccccccccccccccCc
Confidence 4569999999999755 88
No 347
>KOG2560 consensus RNA splicing factor - Slu7p [RNA processing and modification]
Probab=23.09 E-value=21 Score=36.99 Aligned_cols=16 Identities=50% Similarity=1.221 Sum_probs=14.6
Q ss_pred CCcccCCCCCcCcCCC
Q 012794 439 GACFNCGKSGHRASEC 454 (456)
Q Consensus 439 ~~~~~c~~~gh~~~~~ 454 (456)
|.|.|||.-||-..||
T Consensus 113 GACeNCGAmtHk~KDC 128 (529)
T KOG2560|consen 113 GACENCGAMTHKVKDC 128 (529)
T ss_pred hhhhhhhhhhcchHHH
Confidence 4599999999999998
No 348
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=22.93 E-value=2.5e+02 Score=21.81 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=32.2
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccc
Q 012794 54 TIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 109 (456)
Q Consensus 54 ~IIF~~t~~~a~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv 109 (456)
.+|.|.-+..+..|.+..-. ..+.+.+|.....+..+.+.+. .-.|+|+||-
T Consensus 3 ~vIiVEG~~D~~~l~~~g~~-~~~i~t~Gt~~~~~~~~~l~~~---~~~VIiltD~ 54 (81)
T cd01027 3 EVIIVEGKNDTESLKKLGIE-AEIIETNGSIINKETIELIKKA---YRGVIILTDP 54 (81)
T ss_pred eEEEEEchHHHHHHHHhCCC-ccEEEECCCcCCHHHHHHHHHh---CCEEEEEECC
Confidence 46777777777777665432 3566666655554455555554 4568888874
No 349
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=22.90 E-value=2.9e+02 Score=31.56 Aligned_cols=85 Identities=22% Similarity=0.175 Sum_probs=51.3
Q ss_pred CcccHHHHHHH-HHHHHCCCCcEEEEcCChHHHHHHHHHHHhc------CCEEEEeCCCCHHHHHHHHhcccCCCeEEEE
Q 012794 33 TATSKRTILSD-LITVYAKGGKTIVFTQTKRDADEVSLALTSI------IASEALHGDISQHQRERTLNGFRQGKFTVLV 105 (456)
Q Consensus 33 ~~~~k~~~L~~-ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~------~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLV 105 (456)
+-.-|...+.. +++......++||.++|+..|.++++.+.+. ..+....+.-+ ......+|+|
T Consensus 29 TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~----------~~~~~t~I~v 98 (812)
T PRK11664 29 TGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAES----------KVGPNTRLEV 98 (812)
T ss_pred CCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcc----------ccCCCCcEEE
Confidence 33567555543 4443333468999999999999999988632 12322222211 1112346889
Q ss_pred ecc-----ccccccCcCccceEEecCC
Q 012794 106 ATD-----VAARGLDIPNVDLIIHYEL 127 (456)
Q Consensus 106 aTd-----v~~~Gidip~v~~VI~~~~ 127 (456)
+|+ .+....++.++.+||.=..
T Consensus 99 ~T~G~Llr~l~~d~~L~~v~~IIlDEa 125 (812)
T PRK11664 99 VTEGILTRMIQRDPELSGVGLVILDEF 125 (812)
T ss_pred EChhHHHHHHhhCCCcCcCcEEEEcCC
Confidence 996 3444567788998885433
No 350
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=22.57 E-value=1e+02 Score=24.56 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=26.5
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHh-cCC-EEEEeCCC
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDI 84 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~-~~~-~~~lhg~~ 84 (456)
+..++||||.+-..+..++..|.. ++. +..+.|+|
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~ 101 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSW 101 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcH
Confidence 467899999997778788888874 553 66667776
No 351
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=22.45 E-value=1.4e+02 Score=19.70 Aligned_cols=25 Identities=28% Similarity=0.491 Sum_probs=17.2
Q ss_pred EEEeecCccceeeee-cCHHHHHHHHhh
Q 012794 288 IHIIADDRVQGAVFD-LPEEIAKELLNK 314 (456)
Q Consensus 288 i~~~~~~~~~~~~~d-v~~~~a~~~~~~ 314 (456)
++|+-+.. =.+|| ||.+.+++|+..
T Consensus 8 LTIfY~G~--V~Vfd~v~~~Ka~~im~l 33 (36)
T PF06200_consen 8 LTIFYGGQ--VCVFDDVPPDKAQEIMLL 33 (36)
T ss_pred EEEEECCE--EEEeCCCCHHHHHHHHHH
Confidence 45554432 26777 999999999864
No 352
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=22.09 E-value=3.1e+02 Score=31.56 Aligned_cols=64 Identities=11% Similarity=0.075 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc
Q 012794 38 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 38 ~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
..+|..++... .+..+.|.++|...|.+.++.+.. ++.+.++.+++++.+|.+.. ..+|+++|+
T Consensus 111 ~a~lp~~l~al-~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r~~~Y------~~dI~YgT~ 179 (908)
T PRK13107 111 TATLPAYLNAL-TGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKKAAY------NADITYGTN 179 (908)
T ss_pred HHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHhcC------CCCeEEeCC
Confidence 33444444444 456799999999999998888763 47788999999986655443 357888885
No 353
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=21.73 E-value=2.5e+02 Score=32.60 Aligned_cols=70 Identities=17% Similarity=0.187 Sum_probs=54.2
Q ss_pred CeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCC--CCc--------eEEEeeChhhHHHHHHHHHHh
Q 012794 100 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG--KEG--------TAILMFTSSQRRTVRSLERDV 169 (456)
Q Consensus 100 ~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g--~~g--------~~i~~~~~~e~~~~~~ie~~~ 169 (456)
.++.|++-.++..|-|-|+|-.++-..-..+...-.|-+||.-|.- +.| .-.+++...+..+...|.+.+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 5789999999999999999999998888888888999999999842 111 233445666677776665555
No 354
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=21.52 E-value=6.7e+02 Score=23.42 Aligned_cols=58 Identities=14% Similarity=0.128 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcc
Q 012794 37 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGF 96 (456)
Q Consensus 37 k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~F 96 (456)
..+.+.+|+....+-..+.||++.. .+++.+.+.. .+.++-|||+.+++.-.++-..+
T Consensus 39 s~~~a~~i~~~v~~~~~VgVf~n~~--~~~i~~i~~~~~ld~VQlHG~e~~~~~~~l~~~~ 97 (208)
T COG0135 39 SPEQAREIASAVPKVKVVGVFVNES--IEEILEIAEELGLDAVQLHGDEDPEYIDQLKEEL 97 (208)
T ss_pred CHHHHHHHHHhCCCCCEEEEECCCC--HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhc
Confidence 4566666666554335788998763 2334444443 47889999999998766666554
No 355
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=21.46 E-value=3.8e+02 Score=26.94 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh
Q 012794 38 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 73 (456)
Q Consensus 38 ~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~ 73 (456)
+.....++......+..|+|+.|+..+..+.+.+..
T Consensus 45 L~~A~~~i~~~~~~gg~iLfVgTk~~~~~~V~~~A~ 80 (326)
T PRK12311 45 LHRALQAVSDTVAKGGRVLFVGTKRQAQDAVADAAK 80 (326)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHHH
Confidence 444444555444567889999999998887776654
No 356
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=21.36 E-value=7.5e+02 Score=27.03 Aligned_cols=56 Identities=14% Similarity=0.136 Sum_probs=34.9
Q ss_pred EEEEEeecCccccCCCChhHHHHHHHhhCCCCCCccccEEEeecCccceeeeecC-HHHHHHHHhhcC
Q 012794 250 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLP-EEIAKELLNKQI 316 (456)
Q Consensus 250 ~t~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ig~i~~~~~~~~~~~~~dv~-~~~a~~~~~~~~ 316 (456)
.+|+|..= ...++..+|..++....+ -+|-+|+++.+| +||+-. .+.|+++++...
T Consensus 234 k~LfVgNL----~~~~tee~L~~~F~~f~~---G~I~rV~~~rgf----AFVeF~s~e~A~kAi~~ln 290 (578)
T TIGR01648 234 KILYVRNL----MTTTTEEIIEKSFSEFKP---GKVERVKKIRDY----AFVHFEDREDAVKAMDELN 290 (578)
T ss_pred cEEEEeCC----CCCCCHHHHHHHHHhcCC---CceEEEEeecCe----EEEEeCCHHHHHHHHHHhC
Confidence 46777432 346788899888876521 245667777777 566663 355566665433
No 357
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=20.86 E-value=2.7e+02 Score=22.88 Aligned_cols=73 Identities=16% Similarity=0.212 Sum_probs=38.9
Q ss_pred EEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHhcccC-CCeEEEEec
Q 012794 29 AISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQ-GKFTVLVAT 107 (456)
Q Consensus 29 ~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~-g~~~vLVaT 107 (456)
++.+...+|.+++ .++..+...+-.|+ -|..+++.|.+ .++.+..+..- +......+.+.+++ ++++++|.|
T Consensus 3 ~isv~d~~K~~~~-~~a~~l~~~G~~i~--AT~gTa~~L~~---~Gi~~~~v~~~-~~~g~~~i~~~i~~~g~idlVIn~ 75 (112)
T cd00532 3 FLSVSDHVKAMLV-DLAPKLSSDGFPLF--ATGGTSRVLAD---AGIPVRAVSKR-HEDGEPTVDAAIAEKGKFDVVINL 75 (112)
T ss_pred EEEEEcccHHHHH-HHHHHHHHCCCEEE--ECcHHHHHHHH---cCCceEEEEec-CCCCCcHHHHHHhCCCCEEEEEEc
Confidence 3445555665554 44444433344443 34456655543 46666554321 00012457777888 898888877
Q ss_pred c
Q 012794 108 D 108 (456)
Q Consensus 108 d 108 (456)
.
T Consensus 76 ~ 76 (112)
T cd00532 76 R 76 (112)
T ss_pred C
Confidence 5
No 358
>PRK06739 pyruvate kinase; Validated
Probab=20.73 E-value=5.5e+02 Score=26.14 Aligned_cols=78 Identities=14% Similarity=0.126 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHC-CCCcEEEEcCChHHHHHHHHHHHhcCCEEEEeCCCC--------HHHHHHHHhcccCCCeEEEEecc
Q 012794 38 RTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDIS--------QHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 38 ~~~L~~ll~~~~-~~~~~IIF~~t~~~a~~l~~~L~~~~~~~~lhg~~~--------~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
...+.+++.... ..-++|.=..|++.++.|-+.+...-.+.+=.|+|. +..|.+++..-+.-...|+|||.
T Consensus 193 v~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eI~~~sDgimVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATq 272 (352)
T PRK06739 193 IKEIRDFIQQYKETSPNLIAKIETMEAIENFQDICKEADGIMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQ 272 (352)
T ss_pred HHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhcCEEEEECcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcc
Confidence 333444444331 122344444556666666555553323344455542 34566677777776778999999
Q ss_pred ccccccC
Q 012794 109 VAARGLD 115 (456)
Q Consensus 109 v~~~Gid 115 (456)
+++-=+.
T Consensus 273 mLeSM~~ 279 (352)
T PRK06739 273 MLQSMVD 279 (352)
T ss_pred hHHhhcc
Confidence 9865443
No 359
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=20.25 E-value=1.3e+02 Score=23.96 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=26.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-cC-CEEEEeCCCC
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 85 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-~~-~~~~lhg~~~ 85 (456)
..+++|+|.+-..+..++..|.. ++ .+..|.|++.
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 56899999887777778888874 55 4777888863
No 360
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=20.15 E-value=96 Score=24.45 Aligned_cols=36 Identities=8% Similarity=0.115 Sum_probs=26.1
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHh-cCC-EEEEeCCC
Q 012794 49 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDI 84 (456)
Q Consensus 49 ~~~~~~IIF~~t~~~a~~l~~~L~~-~~~-~~~lhg~~ 84 (456)
.+..++||||.+-..+...+..|.. ++. +..|-|++
T Consensus 59 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~ 96 (103)
T cd01447 59 AEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGF 96 (103)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcH
Confidence 4567899999886667777777764 554 66777775
Done!