Query 012794
Match_columns 456
No_of_seqs 460 out of 2927
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 16:21:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012794.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012794hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i32_A Heat resistant RNA depe 100.0 5.4E-46 1.9E-50 365.9 29.6 289 24-335 2-291 (300)
2 3eaq_A Heat resistant RNA depe 100.0 8.3E-35 2.8E-39 272.6 27.2 207 24-231 5-212 (212)
3 2hjv_A ATP-dependent RNA helic 100.0 1.2E-29 4.3E-34 227.4 21.3 157 20-177 5-162 (163)
4 2rb4_A ATP-dependent RNA helic 100.0 8.3E-30 2.8E-34 231.2 18.3 162 20-182 3-172 (175)
5 1t5i_A C_terminal domain of A 100.0 2.9E-29 1E-33 227.2 19.0 157 21-178 2-160 (172)
6 1fuk_A Eukaryotic initiation f 100.0 5.5E-29 1.9E-33 223.6 16.8 156 23-179 2-159 (165)
7 2p6n_A ATP-dependent RNA helic 100.0 3.5E-29 1.2E-33 230.6 15.7 165 3-171 10-176 (191)
8 2jgn_A DBX, DDX3, ATP-dependen 100.0 7.1E-29 2.4E-33 227.4 15.0 154 19-172 14-168 (185)
9 2yjt_D ATP-dependent RNA helic 99.9 7.5E-29 2.6E-33 223.9 0.0 154 23-177 2-157 (170)
10 2db3_A ATP-dependent RNA helic 99.9 4.8E-25 1.6E-29 227.9 17.3 149 20-170 271-421 (434)
11 3sqw_A ATP-dependent RNA helic 99.9 1.2E-24 4E-29 232.9 20.5 161 18-178 250-419 (579)
12 2j0s_A ATP-dependent RNA helic 99.9 1.7E-24 5.9E-29 220.9 19.0 161 18-179 243-405 (410)
13 3i5x_A ATP-dependent RNA helic 99.9 3.3E-24 1.1E-28 228.3 21.0 159 19-177 302-469 (563)
14 1s2m_A Putative ATP-dependent 99.9 7E-24 2.4E-28 215.5 19.9 159 20-179 228-387 (400)
15 2i4i_A ATP-dependent RNA helic 99.9 2.1E-24 7.3E-29 220.4 14.5 151 20-170 245-396 (417)
16 3fht_A ATP-dependent RNA helic 99.9 9.2E-24 3.1E-28 214.9 18.8 166 18-184 233-407 (412)
17 3eiq_A Eukaryotic initiation f 99.9 5.6E-24 1.9E-28 216.8 14.9 161 18-179 247-409 (414)
18 1xti_A Probable ATP-dependent 99.9 3.3E-23 1.1E-27 209.5 20.0 160 19-179 219-380 (391)
19 3pey_A ATP-dependent RNA helic 99.9 6.2E-23 2.1E-27 207.2 19.9 165 20-185 212-386 (395)
20 1hv8_A Putative ATP-dependent 99.9 6.5E-23 2.2E-27 205.0 18.3 153 23-177 212-365 (367)
21 1oyw_A RECQ helicase, ATP-depe 99.9 2E-21 6.9E-26 205.3 20.3 134 33-167 219-353 (523)
22 3fmp_B ATP-dependent RNA helic 99.9 3.5E-24 1.2E-28 223.8 -1.0 162 20-182 302-472 (479)
23 2v1x_A ATP-dependent DNA helic 99.9 2.4E-21 8.1E-26 207.4 18.0 129 37-165 253-382 (591)
24 1fuu_A Yeast initiation factor 99.9 1.4E-23 4.7E-28 212.4 -1.0 158 20-178 228-387 (394)
25 3dmq_A RNA polymerase-associat 99.8 1.3E-20 4.5E-25 212.2 18.5 167 32-199 485-657 (968)
26 2z0m_A 337AA long hypothetical 99.8 7.7E-21 2.6E-25 187.8 13.0 143 21-170 193-335 (337)
27 1tf5_A Preprotein translocase 99.8 1.6E-21 5.3E-26 211.3 8.4 128 29-158 409-546 (844)
28 4a2p_A RIG-I, retinoic acid in 99.8 1.5E-20 5.1E-25 198.8 15.3 125 35-161 371-512 (556)
29 3fho_A ATP-dependent RNA helic 99.8 6.9E-22 2.4E-26 208.2 4.2 161 21-182 327-496 (508)
30 3oiy_A Reverse gyrase helicase 99.8 2.6E-20 8.9E-25 190.6 15.5 139 19-170 225-376 (414)
31 2xau_A PRE-mRNA-splicing facto 99.8 9.8E-21 3.4E-25 208.2 10.7 136 23-159 272-445 (773)
32 3tbk_A RIG-I helicase domain; 99.8 5.6E-20 1.9E-24 194.0 13.8 129 35-165 370-515 (555)
33 2ykg_A Probable ATP-dependent 99.8 1.8E-20 6.3E-25 204.2 10.0 130 34-165 378-524 (696)
34 3jux_A Protein translocase sub 99.8 1.3E-19 4.5E-24 192.5 15.2 141 29-171 451-608 (822)
35 2d7d_A Uvrabc system protein B 99.8 3.1E-19 1.1E-23 193.3 17.2 128 37-165 431-564 (661)
36 2fsf_A Preprotein translocase 99.8 7.9E-20 2.7E-24 197.6 10.5 128 29-158 418-584 (853)
37 4a2q_A RIG-I, retinoic acid in 99.8 3.8E-19 1.3E-23 197.0 15.7 124 35-160 612-752 (797)
38 1c4o_A DNA nucleotide excision 99.8 6.9E-19 2.4E-23 190.7 16.9 130 38-168 426-561 (664)
39 1wp9_A ATP-dependent RNA helic 99.8 3E-19 1E-23 184.1 12.1 125 33-158 340-476 (494)
40 1z5z_A Helicase of the SNF2/RA 99.8 3E-19 1E-23 173.0 11.0 122 32-153 92-218 (271)
41 1nkt_A Preprotein translocase 99.8 1.9E-18 6.3E-23 187.3 16.0 129 29-159 437-619 (922)
42 1yks_A Genome polyprotein [con 99.8 1.7E-19 5.7E-24 186.7 7.2 114 51-169 177-314 (440)
43 4a2w_A RIG-I, retinoic acid in 99.8 1.4E-18 4.8E-23 195.3 15.1 124 35-160 612-752 (936)
44 1gku_B Reverse gyrase, TOP-RG; 99.8 3.7E-19 1.3E-23 201.9 9.6 158 20-187 249-487 (1054)
45 4gl2_A Interferon-induced heli 99.8 1.9E-18 6.6E-23 188.3 14.7 103 51-156 400-517 (699)
46 2whx_A Serine protease/ntpase/ 99.8 9.6E-19 3.3E-23 187.9 10.0 114 51-169 355-493 (618)
47 2wv9_A Flavivirin protease NS2 99.8 1.2E-18 4.1E-23 188.6 10.6 115 50-169 409-548 (673)
48 3o8b_A HCV NS3 protease/helica 99.7 1.7E-18 5.8E-23 185.6 9.4 123 50-182 395-543 (666)
49 4ddu_A Reverse gyrase; topoiso 99.7 7.3E-18 2.5E-22 191.6 14.9 155 19-186 282-523 (1104)
50 2p6r_A Afuhel308 helicase; pro 99.7 1.9E-17 6.6E-22 180.8 17.6 119 37-158 231-389 (702)
51 2zj8_A DNA helicase, putative 99.7 1.8E-17 6.2E-22 181.6 17.2 136 36-176 225-404 (720)
52 2va8_A SSO2462, SKI2-type heli 99.7 2.2E-17 7.5E-22 180.7 17.6 129 47-176 248-426 (715)
53 2jlq_A Serine protease subunit 99.7 1.1E-17 3.7E-22 173.6 11.3 101 51-156 188-310 (451)
54 2z83_A Helicase/nucleoside tri 99.7 1.8E-18 6.3E-23 179.8 5.4 102 51-157 190-313 (459)
55 3rc3_A ATP-dependent RNA helic 99.7 4.1E-17 1.4E-21 176.3 14.7 122 52-175 321-462 (677)
56 2xgj_A ATP-dependent RNA helic 99.7 9.5E-17 3.3E-21 181.0 16.0 115 51-165 343-508 (1010)
57 3l9o_A ATP-dependent RNA helic 99.7 5.7E-17 1.9E-21 184.3 12.7 116 50-165 440-606 (1108)
58 2fwr_A DNA repair protein RAD2 99.7 1.5E-17 5.2E-22 173.0 6.4 116 33-153 332-448 (472)
59 2eyq_A TRCF, transcription-rep 99.7 1.3E-16 4.4E-21 182.3 13.9 121 37-157 798-922 (1151)
60 1gm5_A RECG; helicase, replica 99.7 1.4E-17 4.8E-22 182.6 5.4 124 37-160 564-700 (780)
61 1z63_A Helicase of the SNF2/RA 99.7 2.3E-16 7.8E-21 165.3 12.4 120 34-153 323-447 (500)
62 4a4z_A Antiviral helicase SKI2 99.7 5.4E-16 1.8E-20 174.8 15.2 136 28-165 314-502 (997)
63 2v6i_A RNA helicase; membrane, 99.7 1.6E-16 5.4E-21 163.9 9.4 99 51-154 171-288 (431)
64 2oca_A DAR protein, ATP-depend 99.6 5.1E-16 1.7E-20 163.0 10.1 118 37-155 332-453 (510)
65 1z3i_X Similar to RAD54-like; 99.6 2.7E-15 9.2E-20 162.2 15.1 120 34-153 397-522 (644)
66 3h1t_A Type I site-specific re 99.6 1.7E-15 5.9E-20 162.0 11.6 101 45-146 433-545 (590)
67 4f92_B U5 small nuclear ribonu 99.6 4.8E-15 1.7E-19 174.4 14.0 124 42-165 1146-1316(1724)
68 3mwy_W Chromo domain-containin 99.6 1.7E-14 5.7E-19 159.8 16.3 138 34-171 554-700 (800)
69 4f92_B U5 small nuclear ribonu 99.5 6.7E-15 2.3E-19 173.2 9.2 117 49-165 315-481 (1724)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.3 6.7E-11 2.3E-15 133.2 18.1 120 51-172 537-723 (1038)
71 2e29_A ATP-dependent RNA helic 99.1 3E-10 1E-14 90.4 7.4 89 230-325 2-91 (92)
72 1dsq_A Nucleic acid binding pr 98.3 1.6E-07 5.6E-12 56.5 2.1 18 439-456 3-20 (26)
73 2g0c_A ATP-dependent RNA helic 98.3 4.9E-07 1.7E-11 69.5 3.9 61 250-317 1-61 (76)
74 2ipc_A Preprotein translocase 98.3 1E-05 3.6E-10 88.2 14.9 38 121-158 662-699 (997)
75 2vl7_A XPD; helicase, unknown 98.0 5.6E-06 1.9E-10 87.4 7.6 101 50-155 383-519 (540)
76 1nc8_A Nucleocapsid protein; H 98.0 1.7E-06 5.9E-11 53.4 1.3 17 440-456 8-24 (29)
77 1a6b_B Momulv, zinc finger pro 97.9 3.1E-06 1.1E-10 56.1 1.8 17 440-456 12-28 (40)
78 2a51_A Nucleocapsid protein; s 97.8 2.1E-05 7.2E-10 52.1 4.3 17 440-456 23-39 (39)
79 3i31_A Heat resistant RNA depe 97.8 4.5E-05 1.5E-09 58.0 6.4 78 238-335 2-79 (88)
80 1u6p_A GAG polyprotein; MLV, A 97.6 1.5E-05 5.2E-10 56.9 1.4 17 440-456 25-41 (56)
81 2ec7_A GAG polyprotein (PR55GA 97.5 7.2E-05 2.5E-09 52.1 3.9 16 441-456 30-45 (49)
82 2bl6_A Nucleocapsid protein P1 97.4 4E-05 1.4E-09 50.1 1.6 17 440-456 21-37 (37)
83 2ysa_A Retinoblastoma-binding 97.4 5.1E-05 1.8E-09 53.9 2.2 18 439-456 8-25 (55)
84 3hgt_A HDA1 complex subunit 3; 97.4 0.0012 4E-08 64.5 12.3 120 33-157 106-237 (328)
85 2ihx_A Nucleocapsid (NC) prote 97.4 9.5E-05 3.2E-09 54.1 3.4 17 440-456 32-48 (61)
86 2cqf_A RNA-binding protein LIN 97.4 0.00022 7.7E-09 52.4 5.5 16 441-456 32-47 (63)
87 3ts2_A Protein LIN-28 homolog 97.4 0.00015 5E-09 63.0 4.9 16 441-456 122-137 (148)
88 2li8_A Protein LIN-28 homolog 97.4 0.00021 7.2E-09 54.3 5.2 17 440-456 48-64 (74)
89 2a51_A Nucleocapsid protein; s 97.3 6.6E-05 2.3E-09 49.6 1.7 17 440-456 2-18 (39)
90 2bl6_A Nucleocapsid protein P1 97.3 9.6E-05 3.3E-09 48.2 1.8 17 440-456 2-18 (37)
91 2li8_A Protein LIN-28 homolog 97.2 0.00027 9.3E-09 53.7 3.9 18 439-456 25-42 (74)
92 1cl4_A Protein (GAG polyprotei 97.2 0.00016 5.4E-09 52.7 2.3 18 439-456 31-48 (60)
93 2ec7_A GAG polyprotein (PR55GA 97.1 0.00017 5.6E-09 50.3 1.8 17 440-456 8-24 (49)
94 2cqf_A RNA-binding protein LIN 97.1 0.00033 1.1E-08 51.5 3.1 18 439-456 8-25 (63)
95 3nyb_B Protein AIR2; polya RNA 97.0 0.00017 5.8E-09 56.0 1.3 18 439-456 47-64 (83)
96 1a1t_A Nucleocapsid protein; s 97.0 0.00022 7.5E-09 50.9 1.6 17 440-456 35-51 (55)
97 2ihx_A Nucleocapsid (NC) prote 97.0 0.0002 7E-09 52.3 1.3 17 440-456 6-22 (61)
98 2lli_A Protein AIR2; RNA surve 96.9 0.002 6.8E-08 54.0 7.2 19 438-456 105-123 (124)
99 1a1t_A Nucleocapsid protein; s 96.7 0.00039 1.3E-08 49.6 1.3 17 440-456 14-30 (55)
100 4a15_A XPD helicase, ATP-depen 96.7 0.0063 2.1E-07 65.0 10.7 103 51-156 448-583 (620)
101 3oiy_A Reverse gyrase helicase 96.1 0.016 5.5E-07 58.1 8.9 88 35-123 47-144 (414)
102 1gm5_A RECG; helicase, replica 96.0 0.014 4.6E-07 64.0 8.8 90 35-124 400-496 (780)
103 3ts2_A Protein LIN-28 homolog 96.0 0.002 6.9E-08 55.7 1.7 17 440-456 99-115 (148)
104 2lli_A Protein AIR2; RNA surve 95.6 0.019 6.5E-07 47.9 6.1 18 439-456 65-82 (124)
105 3fe2_A Probable ATP-dependent 95.4 0.094 3.2E-06 48.4 10.9 69 51-123 102-181 (242)
106 4ddu_A Reverse gyrase; topoiso 95.1 0.041 1.4E-06 62.6 8.4 90 34-124 103-202 (1104)
107 3crv_A XPD/RAD3 related DNA he 94.5 0.27 9.4E-06 51.4 12.5 75 50-129 392-473 (551)
108 3iuy_A Probable ATP-dependent 94.3 0.24 8.1E-06 45.0 10.2 70 50-123 93-172 (228)
109 3ber_A Probable ATP-dependent 94.2 0.39 1.3E-05 44.5 11.6 70 51-124 111-192 (249)
110 1wrb_A DJVLGB; RNA helicase, D 94.1 0.36 1.2E-05 44.6 11.2 68 52-123 101-179 (253)
111 2eyq_A TRCF, transcription-rep 94.0 0.14 4.9E-06 58.4 9.8 89 35-123 635-730 (1151)
112 2gxq_A Heat resistant RNA depe 93.3 0.65 2.2E-05 41.1 11.1 86 34-123 48-149 (207)
113 3bor_A Human initiation factor 92.9 0.66 2.3E-05 42.4 10.6 86 35-123 78-178 (237)
114 1qde_A EIF4A, translation init 92.9 0.61 2.1E-05 42.0 10.3 85 34-123 61-160 (224)
115 1t6n_A Probable ATP-dependent 92.7 0.68 2.3E-05 41.6 10.3 87 34-123 61-163 (220)
116 1oyw_A RECQ helicase, ATP-depe 92.6 0.7 2.4E-05 48.0 11.6 74 50-123 64-144 (523)
117 3ly5_A ATP-dependent RNA helic 92.5 1.2 4E-05 41.5 12.1 69 51-123 126-206 (262)
118 2pl3_A Probable ATP-dependent 92.4 0.73 2.5E-05 41.9 10.2 68 51-123 97-176 (236)
119 2db3_A ATP-dependent RNA helic 92.3 0.33 1.1E-05 49.0 8.4 69 51-123 129-208 (434)
120 2oxc_A Probable ATP-dependent 92.0 0.71 2.4E-05 42.0 9.6 85 34-123 71-171 (230)
121 2v1x_A ATP-dependent DNA helic 91.4 0.46 1.6E-05 50.2 8.5 59 50-108 83-144 (591)
122 1gku_B Reverse gyrase, TOP-RG; 91.4 0.41 1.4E-05 54.2 8.6 87 35-123 82-180 (1054)
123 1vec_A ATP-dependent RNA helic 91.1 1.2 4E-05 39.4 9.9 86 34-123 50-151 (206)
124 1xti_A Probable ATP-dependent 89.5 1.7 5.8E-05 42.3 10.4 87 34-123 55-157 (391)
125 1q0u_A Bstdead; DEAD protein, 89.0 0.54 1.8E-05 42.3 5.8 86 34-123 51-155 (219)
126 4a2p_A RIG-I, retinoic acid in 88.8 0.79 2.7E-05 47.1 7.7 69 51-123 55-135 (556)
127 2i4i_A ATP-dependent RNA helic 88.1 1.3 4.3E-05 43.8 8.4 68 52-123 102-180 (417)
128 3tbk_A RIG-I helicase domain; 87.9 0.77 2.6E-05 47.1 6.8 69 51-123 52-132 (555)
129 1wp9_A ATP-dependent RNA helic 87.6 1.8 6.3E-05 43.0 9.3 84 35-123 34-130 (494)
130 4a2q_A RIG-I, retinoic acid in 87.4 1.3 4.4E-05 48.5 8.5 69 51-123 296-376 (797)
131 2j0s_A ATP-dependent RNA helic 86.4 2.4 8.2E-05 41.7 9.3 85 35-123 85-184 (410)
132 3dkp_A Probable ATP-dependent 86.3 0.36 1.2E-05 44.3 2.9 87 34-123 76-180 (245)
133 1fuu_A Yeast initiation factor 85.2 3.7 0.00013 39.9 9.8 84 35-123 69-167 (394)
134 3fmo_B ATP-dependent RNA helic 84.8 1.7 5.8E-05 41.5 7.0 84 34-124 141-241 (300)
135 2z0m_A 337AA long hypothetical 84.8 3.2 0.00011 39.3 9.0 83 34-123 41-134 (337)
136 1hv8_A Putative ATP-dependent 84.6 4.8 0.00016 38.5 10.3 85 34-123 54-152 (367)
137 1s2m_A Putative ATP-dependent 84.4 4.2 0.00015 39.6 9.9 86 34-123 68-168 (400)
138 4a2w_A RIG-I, retinoic acid in 81.2 1.8 6.3E-05 48.2 6.3 69 51-123 296-376 (936)
139 3b6e_A Interferon-induced heli 80.7 1.9 6.6E-05 38.0 5.3 54 51-108 82-140 (216)
140 2fsf_A Preprotein translocase 79.9 3.7 0.00013 44.9 7.9 53 50-108 114-171 (853)
141 3eiq_A Eukaryotic initiation f 78.8 3.5 0.00012 40.3 7.0 86 35-123 88-188 (414)
142 2ykg_A Probable ATP-dependent 78.5 2.7 9.3E-05 44.7 6.4 68 52-123 62-141 (696)
143 3i5x_A ATP-dependent RNA helic 78.1 4.4 0.00015 41.9 7.8 69 52-123 147-231 (563)
144 3nyb_B Protein AIR2; polya RNA 77.8 0.57 1.9E-05 36.0 0.6 15 441-455 27-41 (83)
145 3sqw_A ATP-dependent RNA helic 77.1 1.1 3.9E-05 46.8 2.9 69 52-123 96-180 (579)
146 1tf5_A Preprotein translocase 75.9 6.6 0.00022 42.9 8.4 53 50-108 123-180 (844)
147 3l9o_A ATP-dependent RNA helic 75.0 4.2 0.00014 46.2 6.9 78 35-123 210-295 (1108)
148 2ipc_A Preprotein translocase 70.0 9.5 0.00032 42.1 7.8 53 50-108 119-176 (997)
149 4gl2_A Interferon-induced heli 69.0 2 7E-05 45.7 2.5 68 52-123 57-141 (699)
150 2oca_A DAR protein, ATP-depend 68.2 5 0.00017 40.9 5.1 82 35-123 139-230 (510)
151 2l82_A Designed protein OR32; 67.8 44 0.0015 26.5 12.1 54 54-107 5-59 (162)
152 1nkt_A Preprotein translocase 67.6 12 0.0004 41.2 8.0 53 50-108 151-208 (922)
153 2p6r_A Afuhel308 helicase; pro 65.4 7.4 0.00025 41.6 6.0 83 35-124 51-144 (702)
154 3fmp_B ATP-dependent RNA helic 64.1 14 0.00049 37.0 7.6 83 34-123 141-240 (479)
155 3gk5_A Uncharacterized rhodane 63.6 6.4 0.00022 31.1 3.9 43 43-85 47-90 (108)
156 3g5j_A Putative ATP/GTP bindin 63.2 11 0.00036 30.5 5.3 41 45-85 82-125 (134)
157 1c4o_A DNA nucleotide excision 62.4 48 0.0016 35.1 11.6 86 27-114 31-144 (664)
158 2xgj_A ATP-dependent RNA helic 60.8 14 0.00047 41.5 7.2 78 35-123 112-197 (1010)
159 4a4z_A Antiviral helicase SKI2 60.6 12 0.00043 41.8 6.9 78 35-123 65-152 (997)
160 3pgw_S U1-70K; protein-RNA com 60.4 1.2E+02 0.0041 30.2 13.6 59 248-315 101-164 (437)
161 2jtq_A Phage shock protein E; 59.7 20 0.00067 26.6 5.9 42 42-84 30-75 (85)
162 2fz4_A DNA repair protein RAD2 59.6 17 0.00057 33.0 6.5 61 33-108 117-179 (237)
163 1gmx_A GLPE protein; transfera 58.3 12 0.00041 29.3 4.6 45 41-85 48-94 (108)
164 3fht_A ATP-dependent RNA helic 57.8 28 0.00096 33.6 8.3 83 34-123 74-173 (412)
165 3pey_A ATP-dependent RNA helic 57.5 22 0.00075 34.0 7.4 82 34-123 54-150 (395)
166 3o8b_A HCV NS3 protease/helica 55.1 21 0.00072 38.0 7.1 65 50-125 256-325 (666)
167 3hix_A ALR3790 protein; rhodan 54.3 14 0.00048 28.8 4.4 41 44-84 45-87 (106)
168 2fwr_A DNA repair protein RAD2 54.1 17 0.00059 36.3 6.2 60 34-108 118-179 (472)
169 1h2v_Z 20 kDa nuclear CAP bind 54.1 31 0.0011 28.7 6.9 59 248-315 38-101 (156)
170 2va8_A SSO2462, SKI2-type heli 53.1 12 0.0004 40.1 4.9 83 34-123 56-150 (715)
171 2zj8_A DNA helicase, putative 52.4 8.3 0.00028 41.3 3.6 82 35-123 50-143 (720)
172 3hjh_A Transcription-repair-co 52.2 86 0.003 31.8 11.0 110 27-138 17-145 (483)
173 2q5c_A NTRC family transcripti 51.4 46 0.0016 29.3 7.8 123 52-185 5-132 (196)
174 2d7d_A Uvrabc system protein B 49.8 1.5E+02 0.0051 31.2 12.8 110 27-138 35-176 (661)
175 1tq1_A AT5G66040, senescence-a 49.7 10 0.00036 30.8 3.0 43 43-85 74-118 (129)
176 1rif_A DAR protein, DNA helica 49.2 25 0.00085 32.5 6.0 82 35-123 139-230 (282)
177 3flh_A Uncharacterized protein 44.1 10 0.00035 30.7 2.0 42 43-84 63-107 (124)
178 3foj_A Uncharacterized protein 43.0 6.9 0.00023 30.3 0.8 37 48-84 53-90 (100)
179 3iwh_A Rhodanese-like domain p 42.8 5.8 0.0002 31.3 0.3 38 47-84 52-90 (103)
180 2pju_A Propionate catabolism o 41.9 1.9E+02 0.0066 25.9 11.5 126 52-186 13-145 (225)
181 3fho_A ATP-dependent RNA helic 40.9 44 0.0015 33.9 6.8 81 35-123 169-264 (508)
182 1vp8_A Hypothetical protein AF 40.6 84 0.0029 27.8 7.4 79 27-110 17-108 (201)
183 1wv9_A Rhodanese homolog TT165 40.1 31 0.0011 26.0 4.2 36 49-85 52-88 (94)
184 2k0z_A Uncharacterized protein 38.1 54 0.0018 25.5 5.5 37 48-84 53-90 (110)
185 3eme_A Rhodanese-like domain p 37.4 19 0.00065 27.7 2.6 37 48-84 53-90 (103)
186 3sxu_A DNA polymerase III subu 35.4 66 0.0023 27.1 5.9 77 37-128 24-105 (150)
187 2hqh_E Restin; beta/BETA struc 35.4 9.5 0.00033 22.2 0.3 16 441-456 6-21 (26)
188 1qys_A TOP7; alpha-beta, novel 35.0 1.2E+02 0.0041 22.4 6.3 50 24-73 16-69 (106)
189 3iz6_A 40S ribosomal protein S 34.7 53 0.0018 31.1 5.5 68 36-109 60-131 (305)
190 2fsx_A RV0390, COG0607: rhodan 34.6 45 0.0015 27.5 4.7 37 49-85 78-116 (148)
191 1t57_A Conserved protein MTH16 34.1 70 0.0024 28.4 5.8 80 27-110 25-115 (206)
192 2pk2_A Cyclin-T1, protein TAT; 33.3 13 0.00046 36.3 1.3 9 218-226 191-199 (358)
193 3dmn_A Putative DNA helicase; 30.8 1.9E+02 0.0066 24.3 8.4 71 37-119 46-118 (174)
194 3q2s_C Cleavage and polyadenyl 30.4 75 0.0026 28.5 5.8 62 248-316 67-133 (229)
195 3u5c_A 40S ribosomal protein S 27.6 52 0.0018 30.4 4.1 67 37-109 56-126 (252)
196 3mwy_W Chromo domain-containin 27.3 1.2E+02 0.0042 32.7 7.8 60 48-108 283-353 (800)
197 3bbn_B Ribosomal protein S2; s 27.3 53 0.0018 29.9 4.1 36 37-72 49-84 (231)
198 2hhg_A Hypothetical protein RP 27.2 44 0.0015 27.1 3.3 36 49-84 84-121 (139)
199 3ilm_A ALR3790 protein; rhodan 26.8 42 0.0014 27.7 3.2 37 48-84 53-91 (141)
200 1vee_A Proline-rich protein fa 26.3 59 0.002 26.3 3.9 37 49-85 72-110 (134)
201 3nhv_A BH2092 protein; alpha-b 26.2 42 0.0014 27.8 3.0 37 49-85 70-109 (144)
202 1qxn_A SUD, sulfide dehydrogen 25.4 38 0.0013 27.7 2.6 37 48-84 79-117 (137)
203 3zyw_A Glutaredoxin-3; metal b 23.0 2.6E+02 0.0089 21.6 7.1 45 50-94 14-65 (111)
204 2yv2_A Succinyl-COA synthetase 22.9 82 0.0028 29.7 4.7 52 51-102 72-124 (297)
205 3ipz_A Monothiol glutaredoxin- 22.6 2.6E+02 0.009 21.4 7.5 45 50-94 16-67 (109)
206 3d1p_A Putative thiosulfate su 22.5 54 0.0019 26.6 3.0 35 50-84 90-126 (139)
207 1uar_A Rhodanese; sulfurtransf 21.8 84 0.0029 28.9 4.6 45 40-84 220-269 (285)
208 2vqe_B 30S ribosomal protein S 21.6 37 0.0013 31.5 1.9 37 36-72 49-85 (256)
209 2yv1_A Succinyl-COA ligase [AD 21.5 85 0.0029 29.5 4.5 61 41-102 62-123 (294)
210 2v6i_A RNA helicase; membrane, 21.1 31 0.001 34.4 1.3 35 49-84 29-63 (431)
211 1vi6_A 30S ribosomal protein S 21.1 40 0.0014 30.2 2.0 66 37-109 55-124 (208)
212 2dgu_A Heterogeneous nuclear r 20.4 2.7E+02 0.0092 20.7 9.7 53 249-314 11-64 (103)
No 1
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=5.4e-46 Score=365.92 Aligned_cols=289 Identities=38% Similarity=0.587 Sum_probs=253.6
Q ss_pred CeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeE
Q 012794 24 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFT 102 (456)
Q Consensus 24 ~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~ 102 (456)
+++|+++.++..+|+++|.+++..+. ..++||||+|+++++.|+..|.. ++.+.+|||+|++.+|+.+++.|++|+++
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 57899999999999999999998875 68999999999999999999985 78999999999999999999999999999
Q ss_pred EEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCceecCCCCHH
Q 012794 103 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 182 (456)
Q Consensus 103 vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~~~~p~~~ 182 (456)
|||||+++++|||+|++++||+|++|++.++|+||+|||||+|+.|.|++|+++.+...++.+++.++..++.+.+|+.+
T Consensus 81 vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ 160 (300)
T 3i32_A 81 VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE 160 (300)
T ss_dssp EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHH
T ss_pred EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhcCHHHHHHHHHHHhCCCCCCCCccccCCCCceEEEEEeecCcccc
Q 012794 183 DVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSR 262 (456)
Q Consensus 183 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~a~ala~~~~~~~~~~~r~l~~~~~g~~t~~~~~~~~~~~ 262 (456)
++.+..+..++..+..+.....+.|.+++++++++..++.+++||+.+++... ..+++++..++|+|++++.++ .
T Consensus 161 ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~--~~~~l~~~~~~~~~~~~~~g~---~ 235 (300)
T 3i32_A 161 EVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGAP--AERSLLTGEEGWRTYKATGPR---L 235 (300)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC--CCBCTTTCCBSCBCEEEECTT---C
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc--CccccccCCCCcEEEEEecCC---C
Confidence 99999999999999888888899999999999999999999999999998776 678898889999999999987 3
Q ss_pred CCCChhHHHHHHHhhCCCCCCccccEEEeecCccceeeeecCHHHHHHHHhhcCCCCCceeecccCCCccCCC
Q 012794 263 GFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDG 335 (456)
Q Consensus 263 ~~~~~~~i~~~l~~~~~~~~~~ig~i~~~~~~~~~~~~~dv~~~~a~~~~~~~~~~g~~l~~~t~LP~l~~~~ 335 (456)
.. |++|+ .|... +. +||.|+|.+++ +|||||++.++ ..++++++++++||+|+..+
T Consensus 236 ~~--~~~~~-~i~~~-~~---~ig~i~~~~~~----~~~dvp~~~~~------~~~~~~~~~~~~~p~~~~~~ 291 (300)
T 3i32_A 236 SL--PRLVA-LLKGQ-GL---EVGKVAEAEGG----FYVDLRPEARP------EVAGLRLEPARRVEGLLEIP 291 (300)
T ss_dssp CH--HHHHH-HHHHT-TC---CCCCEEEETTE----EEECBCSSCCC------CCTTCEEEEC----------
T ss_pred CC--cHHHH-HHHhc-CC---eECcEEEeCCE----EEEEeCHHHcC------cCCCcEEEecccCCCCccCC
Confidence 33 99997 55553 33 99999997775 89999999987 34689999999999999875
No 2
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=100.00 E-value=8.3e-35 Score=272.65 Aligned_cols=207 Identities=44% Similarity=0.700 Sum_probs=194.4
Q ss_pred CeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeE
Q 012794 24 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFT 102 (456)
Q Consensus 24 ~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~ 102 (456)
.+.+.++.++...|+++|.+++.... .+++||||+|+.+++.++..|.. ++.+..+||+|++.+|+++++.|+++.++
T Consensus 5 ~~~~~~~~~~~~~k~~~l~~ll~~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 83 (212)
T 3eaq_A 5 TYEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR 83 (212)
T ss_dssp CBCCEEEECCTTSHHHHHHHHHHHHC-CSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC
T ss_pred ceeeeEEeCCHHHHHHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe
Confidence 46788888999999999999998764 68999999999999999999985 78999999999999999999999999999
Q ss_pred EEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCceecCCCCHH
Q 012794 103 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 182 (456)
Q Consensus 103 vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~~~~p~~~ 182 (456)
|||||+++++|||+|++++||+|++|++++.|+||+|||||.|+.|.|++|+++.+...++.+++.++..++.+.+|+.+
T Consensus 84 vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 163 (212)
T 3eaq_A 84 VLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE 163 (212)
T ss_dssp EEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHH
T ss_pred EEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhcCHHHHHHHHHHHh
Q 012794 183 DVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 231 (456)
Q Consensus 183 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~a~ala~~~ 231 (456)
++.+.....++..+..........|.+.+++++++++++++++||++++
T Consensus 164 ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~ll 212 (212)
T 3eaq_A 164 EVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLL 212 (212)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhhC
Confidence 9999999999999998877777899999999999999999999999873
No 3
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.97 E-value=1.2e-29 Score=227.45 Aligned_cols=157 Identities=34% Similarity=0.601 Sum_probs=147.5
Q ss_pred ccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccC
Q 012794 20 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ 98 (456)
Q Consensus 20 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~ 98 (456)
....+|+|+++.++..+|+.+|.+++... ...++||||+|+..++.+++.|.. ++.+..+||+|++.+|..+++.|++
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 45667999999999999999999999876 457999999999999999999985 7899999999999999999999999
Q ss_pred CCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCceecC
Q 012794 99 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 177 (456)
Q Consensus 99 g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~~~ 177 (456)
++++|||||+++++|+|+|++++||+|++|+++..|+||+||+||.|++|.+++|+.+.+...++.+++.++.++++++
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEECC
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998887653
No 4
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=8.3e-30 Score=231.22 Aligned_cols=162 Identities=28% Similarity=0.495 Sum_probs=147.0
Q ss_pred ccccCeeEEEEEcCccc-HHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhccc
Q 012794 20 KLAEGIKLYAISTTATS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFR 97 (456)
Q Consensus 20 ~~~~~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr 97 (456)
.++.+|+|+|+.++..+ |+.+|.+++... ...++||||+|+..++.++..|.. ++.+..+||+|++.+|..+++.|+
T Consensus 3 ~~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~ 81 (175)
T 2rb4_A 3 LTLNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFR 81 (175)
T ss_dssp CCBCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHH
T ss_pred CccCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 45678999999998765 999999988765 457999999999999999999985 789999999999999999999999
Q ss_pred CCCeEEEEeccccccccCcCccceEEecCCC------CChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCC
Q 012794 98 QGKFTVLVATDVAARGLDIPNVDLIIHYELP------NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 171 (456)
Q Consensus 98 ~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p------~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~ 171 (456)
++.++|||||+++++|+|+|++++||+||+| .+..+|+||+||+||.|+.|.+++|+.+.+...+..+++.++.
T Consensus 82 ~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 161 (175)
T 2rb4_A 82 DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNS 161 (175)
T ss_dssp TTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred cCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred CceecCCCCHH
Q 012794 172 KFEFVSPPVVE 182 (456)
Q Consensus 172 ~~~~~~~p~~~ 182 (456)
.++.++++..+
T Consensus 162 ~~~~~~~~~~~ 172 (175)
T 2rb4_A 162 SIKQLNAEDMD 172 (175)
T ss_dssp CCEEECSSCCC
T ss_pred cccccCCchhc
Confidence 99988877554
No 5
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=2.9e-29 Score=227.19 Aligned_cols=157 Identities=23% Similarity=0.443 Sum_probs=144.3
Q ss_pred cccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCC
Q 012794 21 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG 99 (456)
Q Consensus 21 ~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g 99 (456)
++.+|+|+++.++..+|+.+|.+++... +..++||||+|+..++.++..|.. ++.+..+||+|++.+|+.+++.|+++
T Consensus 2 ~~~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 80 (172)
T 1t5i_A 2 SLHGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF 80 (172)
T ss_dssp ---CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred ccCCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCC
Confidence 3568999999999999999999999876 467999999999999999999985 78999999999999999999999999
Q ss_pred CeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChh-hHHHHHHHHHHhCCCceecCC
Q 012794 100 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFVSP 178 (456)
Q Consensus 100 ~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~-e~~~~~~ie~~~~~~~~~~~~ 178 (456)
.++|||||+++++|+|+|++++||+||+|++++.|+||+||+||.|+.|.+++|+.+. +...++.+++.+...++.++.
T Consensus 81 ~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (172)
T 1t5i_A 81 QRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 160 (172)
T ss_dssp SCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-
T ss_pred CCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCCh
Confidence 9999999999999999999999999999999999999999999999999999999875 578899999999988887654
No 6
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.96 E-value=5.5e-29 Score=223.60 Aligned_cols=156 Identities=31% Similarity=0.584 Sum_probs=140.8
Q ss_pred cCeeEEEEEcCccc-HHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCC
Q 012794 23 EGIKLYAISTTATS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK 100 (456)
Q Consensus 23 ~~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~ 100 (456)
.+|+|+|+.++..+ |+++|.+++... ...++||||+|++.++.++..|.. ++.+..+||+|++.+|..+++.|++++
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 46899999988877 999999999876 468999999999999999999985 789999999999999999999999999
Q ss_pred eEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCceecCCC
Q 012794 101 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 179 (456)
Q Consensus 101 ~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~~~~p 179 (456)
++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++++.+.+...+..+++.++..++.++.+
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSC
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988877655
No 7
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.96 E-value=3.5e-29 Score=230.60 Aligned_cols=165 Identities=26% Similarity=0.382 Sum_probs=133.1
Q ss_pred cccccCCCccccCCcccccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEe
Q 012794 3 NYFVMFSHSTQVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALH 81 (456)
Q Consensus 3 ~~l~~~~~i~~v~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lh 81 (456)
+|++++..|.+- ....+..+|+|+++.++...|+..|.+++... ..++||||+|+..++.+++.|.. ++.+..+|
T Consensus 10 ~~~~~p~~i~v~--~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lh 85 (191)
T 2p6n_A 10 GVDLGTENLYFQ--SMGAASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIH 85 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred cccCCCEEEEEC--CCCCCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEe
Confidence 678888777653 33456789999999999999999999988653 46899999999999999999985 78999999
Q ss_pred CCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChh-hHH
Q 012794 82 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRR 160 (456)
Q Consensus 82 g~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~-e~~ 160 (456)
|+|++.+|+++++.|++++++|||||+++++|||+|++++||+||+|++++.|+||+|||||.|++|.+++|+++. +..
T Consensus 86 g~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~ 165 (191)
T 2p6n_A 86 GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDES 165 (191)
T ss_dssp TTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876 677
Q ss_pred HHHHHHHHhCC
Q 012794 161 TVRSLERDVGC 171 (456)
Q Consensus 161 ~~~~ie~~~~~ 171 (456)
.++.|++.+..
T Consensus 166 ~~~~l~~~l~~ 176 (191)
T 2p6n_A 166 VLMDLKALLLE 176 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776543
No 8
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.96 E-value=7.1e-29 Score=227.39 Aligned_cols=154 Identities=40% Similarity=0.559 Sum_probs=128.6
Q ss_pred cccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhccc
Q 012794 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFR 97 (456)
Q Consensus 19 ~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr 97 (456)
..+..+|+|+++.++...|+..|.+++....+..++||||+|+..++.|+..|.. ++.+..+||+|++.+|+.+++.|+
T Consensus 14 ~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~ 93 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 93 (185)
T ss_dssp --CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHH
T ss_pred CCCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHH
Confidence 4567789999999999999999999998876678999999999999999999985 789999999999999999999999
Q ss_pred CCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCC
Q 012794 98 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 172 (456)
Q Consensus 98 ~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~ 172 (456)
+++++|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++|+++.+...++.+++.+...
T Consensus 94 ~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 168 (185)
T 2jgn_A 94 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEA 168 (185)
T ss_dssp HTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHT
T ss_pred cCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999988888888776543
No 9
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.90 E-value=7.5e-29 Score=223.92 Aligned_cols=154 Identities=29% Similarity=0.505 Sum_probs=141.8
Q ss_pred cCeeEEEEEcCc-ccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCC
Q 012794 23 EGIKLYAISTTA-TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK 100 (456)
Q Consensus 23 ~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~ 100 (456)
.+|+|+++.++. ..|+.+|.+++... ...++||||+|+..++.+++.|.. ++.+..+||+|++.+|..+++.|++++
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~ 80 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 80 (170)
Confidence 367888888888 88999999998764 457999999999999999999985 788999999999999999999999999
Q ss_pred eEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCceecC
Q 012794 101 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 177 (456)
Q Consensus 101 ~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~~~ 177 (456)
++|||||+++++|+|+|++++||+|++|+++..|+||+||+||.|+.|.+++++.+.+...++.+++.++..++...
T Consensus 81 ~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (170)
T 2yjt_D 81 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 157 (170)
Confidence 99999999999999999999999999999999999999999999999999999999999999999888877665543
No 10
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.92 E-value=4.8e-25 Score=227.86 Aligned_cols=149 Identities=36% Similarity=0.590 Sum_probs=133.4
Q ss_pred ccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccC
Q 012794 20 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ 98 (456)
Q Consensus 20 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~ 98 (456)
.....+.+.++.+....|...|.+++.... .++||||+|++.|+.+++.|.+ ++.+..+||+|++.+|+++++.|++
T Consensus 271 ~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~--~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~ 348 (434)
T 2db3_A 271 GACSDVKQTIYEVNKYAKRSKLIEILSEQA--DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKN 348 (434)
T ss_dssp CCCTTEEEEEEECCGGGHHHHHHHHHHHCC--TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHT
T ss_pred ccccccceEEEEeCcHHHHHHHHHHHHhCC--CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHc
Confidence 345678899888999899999999887653 4599999999999999999985 7899999999999999999999999
Q ss_pred CCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChh-hHHHHHHHHHHhC
Q 012794 99 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVG 170 (456)
Q Consensus 99 g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~-e~~~~~~ie~~~~ 170 (456)
++.+|||||+++++|||+|+|++|||||+|.++++|+||+|||||+|+.|.+++|+.+. +...+..|.+.+.
T Consensus 349 g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~ 421 (434)
T 2db3_A 349 GSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILE 421 (434)
T ss_dssp SSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHH
T ss_pred CCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999854 4555555555543
No 11
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.92 E-value=1.2e-24 Score=232.89 Aligned_cols=161 Identities=26% Similarity=0.408 Sum_probs=137.4
Q ss_pred ccccccCeeEEEEEcCcc--cHHHHHHHHHH---HHCCCCcEEEEcCChHHHHHHHHHHHh----cCCEEEEeCCCCHHH
Q 012794 18 DEKLAEGIKLYAISTTAT--SKRTILSDLIT---VYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQ 88 (456)
Q Consensus 18 ~~~~~~~i~~~~~~~~~~--~k~~~L~~ll~---~~~~~~~~IIF~~t~~~a~~l~~~L~~----~~~~~~lhg~~~~~~ 88 (456)
.......+.+.++.+... .+..++..++. ......++||||+|+..|+.+++.|.+ .+.+..+||+|++.+
T Consensus 250 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~ 329 (579)
T 3sqw_A 250 EPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNK 329 (579)
T ss_dssp SCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHH
T ss_pred ccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHH
Confidence 344455677776665542 23344443333 324567999999999999999999984 678999999999999
Q ss_pred HHHHHhcccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHH
Q 012794 89 RERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 168 (456)
Q Consensus 89 R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~ 168 (456)
|.++++.|++++++|||||+++++|||+|+|++||+|++|.+++.|+||+|||||+|+.|.|++|+.+.+..+++.|++.
T Consensus 330 R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~ 409 (579)
T 3sqw_A 330 RTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDA 409 (579)
T ss_dssp HHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCceecCC
Q 012794 169 VGCKFEFVSP 178 (456)
Q Consensus 169 ~~~~~~~~~~ 178 (456)
....++....
T Consensus 410 ~~~~~~~~~~ 419 (579)
T 3sqw_A 410 KNIVIAKQEK 419 (579)
T ss_dssp HCCCCCEEEE
T ss_pred hCCCcccccC
Confidence 9887766543
No 12
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.92 E-value=1.7e-24 Score=220.88 Aligned_cols=161 Identities=35% Similarity=0.601 Sum_probs=147.4
Q ss_pred ccccccCeeEEEEEcCccc-HHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhc
Q 012794 18 DEKLAEGIKLYAISTTATS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNG 95 (456)
Q Consensus 18 ~~~~~~~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~ 95 (456)
.......+.+++..+.... |...|.+++.... ..++||||+|++.++.+++.|.. ++.+..+||+|++.+|+++++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~-~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~ 321 (410)
T 2j0s_A 243 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT-ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 321 (410)
T ss_dssp GGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHT-SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHH
T ss_pred ccccCCCceEEEEEeCcHHhHHHHHHHHHHhcC-CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHH
Confidence 3445667888888776654 8999999888764 57999999999999999999985 7899999999999999999999
Q ss_pred ccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCcee
Q 012794 96 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 175 (456)
Q Consensus 96 Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~ 175 (456)
|++++++|||||+++++|||+|++++||+|++|++...|+||+||+||.|++|.+++|+.+.+...++.++++++..++.
T Consensus 322 f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (410)
T 2j0s_A 322 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDE 401 (410)
T ss_dssp HHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEE
T ss_pred HHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cCCC
Q 012794 176 VSPP 179 (456)
Q Consensus 176 ~~~p 179 (456)
++.+
T Consensus 402 ~~~~ 405 (410)
T 2j0s_A 402 MPMN 405 (410)
T ss_dssp CCSC
T ss_pred cccc
Confidence 7654
No 13
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.92 E-value=3.3e-24 Score=228.33 Aligned_cols=159 Identities=26% Similarity=0.411 Sum_probs=135.8
Q ss_pred cccccCeeEEEEEcCcc-cH-HHHHHHHHH---HHCCCCcEEEEcCChHHHHHHHHHHHh----cCCEEEEeCCCCHHHH
Q 012794 19 EKLAEGIKLYAISTTAT-SK-RTILSDLIT---VYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQR 89 (456)
Q Consensus 19 ~~~~~~i~~~~~~~~~~-~k-~~~L~~ll~---~~~~~~~~IIF~~t~~~a~~l~~~L~~----~~~~~~lhg~~~~~~R 89 (456)
......+.+.++..... .+ ..++..++. ......++||||+|+..|+.++..|.+ .+.+..+||+|++.+|
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R 381 (563)
T 3i5x_A 302 PEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKR 381 (563)
T ss_dssp CSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHH
T ss_pred ccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHH
Confidence 34455666666655442 22 333333333 334567999999999999999999984 6789999999999999
Q ss_pred HHHHhcccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHh
Q 012794 90 ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 169 (456)
Q Consensus 90 ~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~ 169 (456)
+.+++.|++++++|||||+++++|||+|+|++||+|++|.+++.|+||+|||||+|+.|.+++|+.+.+...++.|++..
T Consensus 382 ~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 382 TSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp HHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCceecC
Q 012794 170 GCKFEFVS 177 (456)
Q Consensus 170 ~~~~~~~~ 177 (456)
...++...
T Consensus 462 ~~~~~~~~ 469 (563)
T 3i5x_A 462 NIVIAKQE 469 (563)
T ss_dssp CCCCCEEE
T ss_pred CCCccccc
Confidence 88776544
No 14
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.91 E-value=7e-24 Score=215.48 Aligned_cols=159 Identities=26% Similarity=0.488 Sum_probs=147.7
Q ss_pred ccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccC
Q 012794 20 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ 98 (456)
Q Consensus 20 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~ 98 (456)
.....+.+++..+....|...|..++... ...++||||+++++++.+++.|.. ++.+..+||+|++.+|..+++.|++
T Consensus 228 ~~~~~~~~~~~~~~~~~k~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 306 (400)
T 1s2m_A 228 LTLKGITQYYAFVEERQKLHCLNTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQ 306 (400)
T ss_dssp CBCTTEEEEEEECCGGGHHHHHHHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cccCCceeEEEEechhhHHHHHHHHHhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhc
Confidence 34567888888888889999999988765 457999999999999999999985 7899999999999999999999999
Q ss_pred CCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCceecCC
Q 012794 99 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 178 (456)
Q Consensus 99 g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~~~~ 178 (456)
++++|||||+++++|+|+|++++||++++|.+...|+||+||+||.|+.|.|++++.+.+...++.|++.++..++.++.
T Consensus 307 g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 386 (400)
T 1s2m_A 307 GKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPA 386 (400)
T ss_dssp TSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCS
T ss_pred CCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887664
Q ss_pred C
Q 012794 179 P 179 (456)
Q Consensus 179 p 179 (456)
.
T Consensus 387 ~ 387 (400)
T 1s2m_A 387 T 387 (400)
T ss_dssp S
T ss_pred c
Confidence 4
No 15
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.91 E-value=2.1e-24 Score=220.36 Aligned_cols=151 Identities=40% Similarity=0.579 Sum_probs=137.8
Q ss_pred ccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccC
Q 012794 20 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ 98 (456)
Q Consensus 20 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~ 98 (456)
.....+.+.++.+....|...|.+++.......++||||+|+++++.+++.|.+ ++.+..+||+|++++|.++++.|++
T Consensus 245 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 324 (417)
T 2i4i_A 245 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 324 (417)
T ss_dssp -CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHc
Confidence 455678888888898999999999998776678999999999999999999985 7899999999999999999999999
Q ss_pred CCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhC
Q 012794 99 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 170 (456)
Q Consensus 99 g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~ 170 (456)
++.+|||||+++++|||+|++++||+|++|.+...|+||+||+||.|+.|.+++|+.+.+...+..+.+.+.
T Consensus 325 g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~ 396 (417)
T 2i4i_A 325 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 396 (417)
T ss_dssp TSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHH
T ss_pred CCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888888877664
No 16
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.91 E-value=9.2e-24 Score=214.92 Aligned_cols=166 Identities=30% Similarity=0.511 Sum_probs=142.2
Q ss_pred ccccccCeeEEEEEcCc-ccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhc
Q 012794 18 DEKLAEGIKLYAISTTA-TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNG 95 (456)
Q Consensus 18 ~~~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~ 95 (456)
.......+.++++.+.. ..|...|..++.... ..++||||+|+++|+.++..|.+ ++.+..+||+|++.+|.++++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 311 (412)
T 3fht_A 233 EEETLDTIKQYYVLCSSRDEKFQALCNLYGAIT-IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIER 311 (412)
T ss_dssp GGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHS-SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHH
T ss_pred ccccccCceEEEEEcCChHHHHHHHHHHHhhcC-CCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHH
Confidence 34456677888777665 568888888887764 57999999999999999999985 7899999999999999999999
Q ss_pred ccCCCeEEEEeccccccccCcCccceEEecCCC------CChhHHHHHhcccccCCCCceEEEeeChh-hHHHHHHHHHH
Q 012794 96 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELP------NDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERD 168 (456)
Q Consensus 96 Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p------~~~~~y~qr~GR~gR~g~~g~~i~~~~~~-e~~~~~~ie~~ 168 (456)
|++++++|||||+++++|||+|++++||+|++| .+..+|+||+||+||.|+.|.+++++.+. +...++.+++.
T Consensus 312 f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~ 391 (412)
T 3fht_A 312 FREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEH 391 (412)
T ss_dssp HHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHH
T ss_pred HHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHH
Confidence 999999999999999999999999999999999 46789999999999999999999999866 48899999999
Q ss_pred hCCCceecCCCCHHHH
Q 012794 169 VGCKFEFVSPPVVEDV 184 (456)
Q Consensus 169 ~~~~~~~~~~p~~~~i 184 (456)
++..++.+..+..+++
T Consensus 392 ~~~~~~~~~~~~~~~~ 407 (412)
T 3fht_A 392 FNKKIERLDTDDLDEI 407 (412)
T ss_dssp HTCCCEEC--------
T ss_pred HCCccccCCCccHHHH
Confidence 9999998877665544
No 17
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.91 E-value=5.6e-24 Score=216.85 Aligned_cols=161 Identities=34% Similarity=0.576 Sum_probs=130.7
Q ss_pred ccccccCeeEEEEEcCcc-cHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhc
Q 012794 18 DEKLAEGIKLYAISTTAT-SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNG 95 (456)
Q Consensus 18 ~~~~~~~i~~~~~~~~~~-~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~ 95 (456)
.......+.++++.+... .|...|..++... ...++||||+++++++.+++.|.. .+.+..+||+|++.+|.++++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~ 325 (414)
T 3eiq_A 247 EELTLEGIRQFYINVEREEWKLDTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMRE 325 (414)
T ss_dssp CCCCTTSCCEEEEECSSSTTHHHHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHH
T ss_pred CccCCCCceEEEEEeChHHhHHHHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHH
Confidence 344556777888776654 4888888888765 457999999999999999999985 7899999999999999999999
Q ss_pred ccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCcee
Q 012794 96 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 175 (456)
Q Consensus 96 Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~ 175 (456)
|++++.+|||||+++++|||+|++++||+|++|.+...|+||+||+||.|++|.|++++++.+...++.+++.++..++.
T Consensus 326 f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (414)
T 3eiq_A 326 FRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEE 405 (414)
T ss_dssp HSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEE
T ss_pred HHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred cCCC
Q 012794 176 VSPP 179 (456)
Q Consensus 176 ~~~p 179 (456)
++..
T Consensus 406 ~~~~ 409 (414)
T 3eiq_A 406 MPLN 409 (414)
T ss_dssp CCC-
T ss_pred cChh
Confidence 7543
No 18
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.90 E-value=3.3e-23 Score=209.52 Aligned_cols=160 Identities=23% Similarity=0.434 Sum_probs=145.6
Q ss_pred cccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhccc
Q 012794 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFR 97 (456)
Q Consensus 19 ~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr 97 (456)
......+.++++.+....|...|.+++... ...++||||+++++++.+++.|.. ++.+..+||+|++.+|.++++.|+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 297 (391)
T 1xti_A 219 KLTLHGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFK 297 (391)
T ss_dssp CCCCTTCEEEEEECCGGGHHHHHHHHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred ccCcccceEEEEEcCchhHHHHHHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHh
Confidence 344567888888888899999999998876 568999999999999999999985 789999999999999999999999
Q ss_pred CCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChh-hHHHHHHHHHHhCCCceec
Q 012794 98 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFV 176 (456)
Q Consensus 98 ~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~-e~~~~~~ie~~~~~~~~~~ 176 (456)
+++.+|||||+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.+++++.+. +...++.+++.+..+++.+
T Consensus 298 ~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (391)
T 1xti_A 298 DFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISEL 377 (391)
T ss_dssp TTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEEC
T ss_pred cCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhC
Confidence 999999999999999999999999999999999999999999999999999999999866 5677899999998888776
Q ss_pred CCC
Q 012794 177 SPP 179 (456)
Q Consensus 177 ~~p 179 (456)
+..
T Consensus 378 ~~~ 380 (391)
T 1xti_A 378 PDE 380 (391)
T ss_dssp CSC
T ss_pred Ccc
Confidence 543
No 19
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.90 E-value=6.2e-23 Score=207.20 Aligned_cols=165 Identities=32% Similarity=0.576 Sum_probs=143.7
Q ss_pred ccccCeeEEEEEcCc-ccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhccc
Q 012794 20 KLAEGIKLYAISTTA-TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFR 97 (456)
Q Consensus 20 ~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr 97 (456)
.....+.+.+..+.. ..|...|..++... ...++||||+++++++.+++.|.. ++.+..+||+|++.+|.++++.|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 290 (395)
T 3pey_A 212 VNVDAIKQLYMDCKNEADKFDVLTELYGLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFR 290 (395)
T ss_dssp CSCTTEEEEEEECSSHHHHHHHHHHHHTTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH
T ss_pred cccccccEEEEEcCchHHHHHHHHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHH
Confidence 445567777776644 56788887777654 458999999999999999999985 789999999999999999999999
Q ss_pred CCCeEEEEeccccccccCcCccceEEecCCCC------ChhHHHHHhcccccCCCCceEEEeeCh-hhHHHHHHHHHHhC
Q 012794 98 QGKFTVLVATDVAARGLDIPNVDLIIHYELPN------DPETFVHRSGRTGRAGKEGTAILMFTS-SQRRTVRSLERDVG 170 (456)
Q Consensus 98 ~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~------~~~~y~qr~GR~gR~g~~g~~i~~~~~-~e~~~~~~ie~~~~ 170 (456)
+++++|||||+++++|||+|++++||+|++|. ++.+|+||+||+||.|+.|.+++++.+ .+...++.+++.++
T Consensus 291 ~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 291 EGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp TTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999 999999999999999999999999985 56778889999988
Q ss_pred -CCceecCCCCHHHHH
Q 012794 171 -CKFEFVSPPVVEDVL 185 (456)
Q Consensus 171 -~~~~~~~~p~~~~i~ 185 (456)
..+..++.+..+++.
T Consensus 371 ~~~~~~~~~~~~~~~~ 386 (395)
T 3pey_A 371 DIEMTRVPTDDWDEVE 386 (395)
T ss_dssp SCCCEECCSSCHHHHH
T ss_pred CceeecCChHHHHHHH
Confidence 777777776665443
No 20
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.90 E-value=6.5e-23 Score=204.98 Aligned_cols=153 Identities=36% Similarity=0.616 Sum_probs=142.4
Q ss_pred cCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCe
Q 012794 23 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF 101 (456)
Q Consensus 23 ~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~ 101 (456)
..+.+.++.+....|...|..++. ....++||||+|+++++.+++.|.. ++.+..+||+|++.+|.++++.|++++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 289 (367)
T 1hv8_A 212 ANIEQSYVEVNENERFEALCRLLK--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKI 289 (367)
T ss_dssp SSSEEEEEECCGGGHHHHHHHHHC--STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSS
T ss_pred CCceEEEEEeChHHHHHHHHHHHh--cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCC
Confidence 467788888888899988888776 3567999999999999999999985 7899999999999999999999999999
Q ss_pred EEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCceecC
Q 012794 102 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 177 (456)
Q Consensus 102 ~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~~~ 177 (456)
+|||||+++++|+|+|++++||++++|.++.+|+||+||+||.|+.|.+++++.+.+...++.|++.++.+++.+.
T Consensus 290 ~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 290 RILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp SEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred eEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998887654
No 21
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.87 E-value=2e-21 Score=205.33 Aligned_cols=134 Identities=21% Similarity=0.438 Sum_probs=122.6
Q ss_pred CcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccc
Q 012794 33 TATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111 (456)
Q Consensus 33 ~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~ 111 (456)
....+...|.+++... ++.++||||+|++.++.+++.|.. ++.+..+||+|++++|+++++.|++++++|||||++++
T Consensus 219 ~~~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~ 297 (523)
T 1oyw_A 219 EKFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFG 297 (523)
T ss_dssp ECSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSC
T ss_pred eCCCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhh
Confidence 3456777777777665 567999999999999999999985 78999999999999999999999999999999999999
Q ss_pred cccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHH
Q 012794 112 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 167 (456)
Q Consensus 112 ~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~ 167 (456)
+|||+|+|++||+|++|.+++.|+||+||+||.|+.+.+++++.+.+...++.+..
T Consensus 298 ~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred CCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999988877776644
No 22
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.87 E-value=3.5e-24 Score=223.78 Aligned_cols=162 Identities=30% Similarity=0.497 Sum_probs=0.0
Q ss_pred ccccCeeEEEEEcCc-ccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhccc
Q 012794 20 KLAEGIKLYAISTTA-TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFR 97 (456)
Q Consensus 20 ~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr 97 (456)
.....+.++++.+.. ..|...|..++... ...++||||+|+..|+.++..|.. .+.+..+||+|++.+|..+++.|+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~ 380 (479)
T 3fmp_B 302 ETLDTIKQYYVLCSSRDEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFR 380 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcCCceEEEEEeCCHHHHHHHHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHH
Confidence 445667777776654 46777777777655 357999999999999999999985 788999999999999999999999
Q ss_pred CCCeEEEEeccccccccCcCccceEEecCCCC------ChhHHHHHhcccccCCCCceEEEeeChhh-HHHHHHHHHHhC
Q 012794 98 QGKFTVLVATDVAARGLDIPNVDLIIHYELPN------DPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVG 170 (456)
Q Consensus 98 ~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~------~~~~y~qr~GR~gR~g~~g~~i~~~~~~e-~~~~~~ie~~~~ 170 (456)
+|+++|||||+++++|||+|++++||+||+|. +...|+||+|||||.|+.|.+++|+.+.+ ...++.|++.++
T Consensus 381 ~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~ 460 (479)
T 3fmp_B 381 EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFN 460 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhC
Confidence 99999999999999999999999999999995 67899999999999999999999998665 788888888888
Q ss_pred CCceecCCCCHH
Q 012794 171 CKFEFVSPPVVE 182 (456)
Q Consensus 171 ~~~~~~~~p~~~ 182 (456)
..++.+..+..+
T Consensus 461 ~~~~~l~~~~~~ 472 (479)
T 3fmp_B 461 KKIERLDTDDLD 472 (479)
T ss_dssp ------------
T ss_pred CCceECCCccHH
Confidence 777766554433
No 23
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.86 E-value=2.4e-21 Score=207.37 Aligned_cols=129 Identities=23% Similarity=0.400 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccC
Q 012794 37 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLD 115 (456)
Q Consensus 37 k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gid 115 (456)
++..|.+++.......++||||+|++.|++|++.|.. ++.+..+|++|++.+|.++++.|++++++|||||+++++|||
T Consensus 253 ~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID 332 (591)
T 2v1x_A 253 FIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGID 332 (591)
T ss_dssp HHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCC
T ss_pred HHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCC
Confidence 3444444443333567999999999999999999985 789999999999999999999999999999999999999999
Q ss_pred cCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHH
Q 012794 116 IPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165 (456)
Q Consensus 116 ip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~i 165 (456)
+|+|++||+|++|.+++.|+||+||+||.|+++.|++|+.+.+...+..+
T Consensus 333 ~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 333 KPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp CSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred cccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887766655
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.86 E-value=1.4e-23 Score=212.35 Aligned_cols=158 Identities=31% Similarity=0.568 Sum_probs=0.0
Q ss_pred ccccCeeEEEEEcCccc-HHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhccc
Q 012794 20 KLAEGIKLYAISTTATS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFR 97 (456)
Q Consensus 20 ~~~~~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr 97 (456)
.....+.++++.+.... |...|..++... ...++||||+|+++++.+++.|.. ++.+..+||+|++.+|.++++.|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 306 (394)
T 1fuu_A 228 LTLEGIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFR 306 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCceEEEEEcCchhhHHHHHHHHHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHH
Confidence 33455666666655543 777788877655 357999999999999999999985 788999999999999999999999
Q ss_pred CCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCceecC
Q 012794 98 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 177 (456)
Q Consensus 98 ~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~~~ 177 (456)
+++.+|||||+++++|+|+|++++||++++|.++..|+||+||+||.|++|.+++++.+.+...++.+++.++..++.++
T Consensus 307 ~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 386 (394)
T 1fuu_A 307 SGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELP 386 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888777654
Q ss_pred C
Q 012794 178 P 178 (456)
Q Consensus 178 ~ 178 (456)
.
T Consensus 387 ~ 387 (394)
T 1fuu_A 387 S 387 (394)
T ss_dssp -
T ss_pred c
Confidence 4
No 25
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.85 E-value=1.3e-20 Score=212.19 Aligned_cols=167 Identities=17% Similarity=0.243 Sum_probs=146.5
Q ss_pred cCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh--cCCEEEEeCCCCHHHHHHHHhcccCCC--eEEEEec
Q 012794 32 TTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGK--FTVLVAT 107 (456)
Q Consensus 32 ~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~--~~~~~~lhg~~~~~~R~~~l~~Fr~g~--~~vLVaT 107 (456)
+....|...|.+++... +..++||||+++..++.|+..|.. ++.+..+||+|++.+|++++++|++++ ++|||||
T Consensus 485 ~~~~~K~~~L~~ll~~~-~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT 563 (968)
T 3dmq_A 485 WNFDPRVEWLMGYLTSH-RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS 563 (968)
T ss_dssp TTTSHHHHHHHHHHHHT-SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS
T ss_pred cCccHHHHHHHHHHHhC-CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec
Confidence 34567999999999874 578999999999999999999983 789999999999999999999999998 9999999
Q ss_pred cccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHh--CCCceecCCCCHHHHH
Q 012794 108 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV--GCKFEFVSPPVVEDVL 185 (456)
Q Consensus 108 dv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~--~~~~~~~~~p~~~~i~ 185 (456)
+++++|||+|++++||+||+|+++..|+||+||++|.|+.+.+++++...+....+.|.+.+ +.++....+|...++.
T Consensus 564 ~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~~~~~i~ 643 (968)
T 3dmq_A 564 EIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIY 643 (968)
T ss_dssp CCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCSSHHHHH
T ss_pred chhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCceecCCCCHHHHH
Confidence 99999999999999999999999999999999999999999877776655555556666666 6667778889999999
Q ss_pred HHHHHHHHHHHhcC
Q 012794 186 ESSAEQVVATLNGV 199 (456)
Q Consensus 186 ~~~~~~~~~~l~~~ 199 (456)
+...+.+...+...
T Consensus 644 ~~~~~~l~~~l~~~ 657 (968)
T 3dmq_A 644 DSVYNDLINYLASP 657 (968)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcc
Confidence 98888888877654
No 26
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.84 E-value=7.7e-21 Score=187.84 Aligned_cols=143 Identities=29% Similarity=0.538 Sum_probs=120.9
Q ss_pred cccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHhcccCCC
Q 012794 21 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGK 100 (456)
Q Consensus 21 ~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~ 100 (456)
....+.+.++.+....+..+ ..+.. ....++||||+|+++++.+++.|. .+..+||+|++.+|.++++.|++++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~---~~~~~~~~~~~~~r~~~~~~f~~~~ 266 (337)
T 2z0m_A 193 GLANVEHKFVHVKDDWRSKV--QALRE-NKDKGVIVFVRTRNRVAKLVRLFD---NAIELRGDLPQSVRNRNIDAFREGE 266 (337)
T ss_dssp GGGGEEEEEEECSSSSHHHH--HHHHT-CCCSSEEEECSCHHHHHHHHTTCT---TEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred ccCCceEEEEEeChHHHHHH--HHHHh-CCCCcEEEEEcCHHHHHHHHHHhh---hhhhhcCCCCHHHHHHHHHHHHcCC
Confidence 34556777777666544322 33332 356899999999999999988876 5889999999999999999999999
Q ss_pred eEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhC
Q 012794 101 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 170 (456)
Q Consensus 101 ~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~ 170 (456)
++|||||+++++|+|+|++++||++++|.++..|+||+||+||.|+.|.+++++. .+...++.|++.++
T Consensus 267 ~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 267 YDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp CSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred CcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999 88888888877654
No 27
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.84 E-value=1.6e-21 Score=211.34 Aligned_cols=128 Identities=21% Similarity=0.263 Sum_probs=114.1
Q ss_pred EEEcCcccHHHHHHHHHHH-HCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEe
Q 012794 29 AISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVA 106 (456)
Q Consensus 29 ~~~~~~~~k~~~L~~ll~~-~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVa 106 (456)
++.+...+|..+|.+++.. +..+.++||||+|++.++.|+..|.. ++.+.+|||++.+.+|..+.++|+.+ .||||
T Consensus 409 ~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIA 486 (844)
T 1tf5_A 409 LIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIA 486 (844)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEE
T ss_pred EEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEe
Confidence 4456777899888887764 34567899999999999999999995 89999999999988888888888876 58999
Q ss_pred ccccccccCcC--------ccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhh
Q 012794 107 TDVAARGLDIP--------NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 158 (456)
Q Consensus 107 Tdv~~~Gidip--------~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e 158 (456)
||+|+||+||+ ++.+||||++|.+.+.|+||+|||||+|.+|.+++|++..+
T Consensus 487 TdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 487 TNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp ETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred CCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 99999999999 78899999999999999999999999999999999998665
No 28
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.84 E-value=1.5e-20 Score=198.79 Aligned_cols=125 Identities=20% Similarity=0.334 Sum_probs=70.5
Q ss_pred ccHHHHHHHHHHHH---CCCCcEEEEcCChHHHHHHHHHHHhc-------------CCEEEEeCCCCHHHHHHHHhcccC
Q 012794 35 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-------------IASEALHGDISQHQRERTLNGFRQ 98 (456)
Q Consensus 35 ~~k~~~L~~ll~~~---~~~~~~IIF~~t~~~a~~l~~~L~~~-------------~~~~~lhg~~~~~~R~~~l~~Fr~ 98 (456)
..|+..|.++|... ....++||||+++.+++.|+..|... .....+||+|++.+|.+++++|++
T Consensus 371 ~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~ 450 (556)
T 4a2p_A 371 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 450 (556)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC---------------------------
T ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcc
Confidence 56888888888654 56789999999999999999999742 234556788999999999999999
Q ss_pred -CCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHH
Q 012794 99 -GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT 161 (456)
Q Consensus 99 -g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~ 161 (456)
+.++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. +.|.+++|++..+...
T Consensus 451 ~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 451 SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 512 (556)
T ss_dssp ---CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHHH
T ss_pred cCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHH
Confidence 999999999999999999999999999999999999999999 999 7899999998776543
No 29
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.83 E-value=6.9e-22 Score=208.24 Aligned_cols=161 Identities=30% Similarity=0.536 Sum_probs=112.2
Q ss_pred cccCeeEEEEEcC-cccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccC
Q 012794 21 LAEGIKLYAISTT-ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ 98 (456)
Q Consensus 21 ~~~~i~~~~~~~~-~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~ 98 (456)
....+.+.++.+. ...|...+..++... ...++||||+++..|+.++..|.+ .+.+..+||+|++.+|+.+++.|++
T Consensus 327 ~~~~~~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~ 405 (508)
T 3fho_A 327 SVEGIKQLYMDCQSEEHKYNVLVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRV 405 (508)
T ss_dssp ---CCCCEEEEC--CHHHHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHS
T ss_pred CcccceEEEEECCchHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHC
Confidence 3445566666553 456788888877655 458999999999999999999985 7889999999999999999999999
Q ss_pred CCeEEEEeccccccccCcCccceEEecCCC------CChhHHHHHhcccccCCCCceEEEeeC-hhhHHHHHHHHHHhCC
Q 012794 99 GKFTVLVATDVAARGLDIPNVDLIIHYELP------NDPETFVHRSGRTGRAGKEGTAILMFT-SSQRRTVRSLERDVGC 171 (456)
Q Consensus 99 g~~~vLVaTdv~~~Gidip~v~~VI~~~~p------~~~~~y~qr~GR~gR~g~~g~~i~~~~-~~e~~~~~~ie~~~~~ 171 (456)
++++|||||+++++|+|+|++++||++++| .++..|+||+||+||.|+.|.+++|+. ..+...++.+++.+..
T Consensus 406 g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~ 485 (508)
T 3fho_A 406 GTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQR 485 (508)
T ss_dssp SSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCC
T ss_pred CCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999 789999999999999999999999998 4567788999999988
Q ss_pred CceecCCCCHH
Q 012794 172 KFEFVSPPVVE 182 (456)
Q Consensus 172 ~~~~~~~p~~~ 182 (456)
.++.++.+..+
T Consensus 486 ~i~~l~~~~~~ 496 (508)
T 3fho_A 486 PITRVPTDDYE 496 (508)
T ss_dssp CCC--------
T ss_pred CcccCCCccHH
Confidence 88877655443
No 30
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.83 E-value=2.6e-20 Score=190.61 Aligned_cols=139 Identities=22% Similarity=0.417 Sum_probs=119.4
Q ss_pred cccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEE-EEeCCCCHHHHHHHHhcc
Q 012794 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASE-ALHGDISQHQRERTLNGF 96 (456)
Q Consensus 19 ~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~-~lhg~~~~~~R~~~l~~F 96 (456)
.....++.+.++.+ +|.+.|.+++... +.++||||+|+..|+.++..|.. ++.+. .+||+ +|+ ++.|
T Consensus 225 ~~~~~~i~~~~~~~---~~~~~l~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f 293 (414)
T 3oiy_A 225 VSVARNITHVRISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDF 293 (414)
T ss_dssp CCCCCSEEEEEESS---CCHHHHHHHHHHH--CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHH
T ss_pred ccccccchheeecc---CHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHH
Confidence 34456778887766 4566677777764 48999999999999999999985 78887 89995 444 9999
Q ss_pred cCCCeEEEEe----ccccccccCcCc-cceEEecCCC--CChhHHHHHhcccccCC----CCceEEEeeChhhHHHHHHH
Q 012794 97 RQGKFTVLVA----TDVAARGLDIPN-VDLIIHYELP--NDPETFVHRSGRTGRAG----KEGTAILMFTSSQRRTVRSL 165 (456)
Q Consensus 97 r~g~~~vLVa----Tdv~~~Gidip~-v~~VI~~~~p--~~~~~y~qr~GR~gR~g----~~g~~i~~~~~~e~~~~~~i 165 (456)
++|+++|||| |+++++|||+|+ |++||+|++| .++.+|+||+|||||.| ++|.+++++ .+...++.+
T Consensus 294 ~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l 371 (414)
T 3oiy_A 294 KVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESL 371 (414)
T ss_dssp HTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHH
T ss_pred hCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHH
Confidence 9999999999 999999999999 9999999999 99999999999999987 589999999 566777888
Q ss_pred HHHhC
Q 012794 166 ERDVG 170 (456)
Q Consensus 166 e~~~~ 170 (456)
++.++
T Consensus 372 ~~~~~ 376 (414)
T 3oiy_A 372 KTRLL 376 (414)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88777
No 31
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.82 E-value=9.8e-21 Score=208.23 Aligned_cols=136 Identities=16% Similarity=0.331 Sum_probs=116.0
Q ss_pred cCeeEEEEEcCcccHHHH-HHHHHHHH--CCCCcEEEEcCChHHHHHHHHHHHh------------cCCEEEEeCCCCHH
Q 012794 23 EGIKLYAISTTATSKRTI-LSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS------------IIASEALHGDISQH 87 (456)
Q Consensus 23 ~~i~~~~~~~~~~~k~~~-L~~ll~~~--~~~~~~IIF~~t~~~a~~l~~~L~~------------~~~~~~lhg~~~~~ 87 (456)
..++++|+..+..++... +..++..+ ...+++||||+++++++.+++.|.. .+.+.+|||+|+++
T Consensus 272 ~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~ 351 (773)
T 2xau_A 272 YPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPH 351 (773)
T ss_dssp CCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHH
T ss_pred cceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHH
Confidence 357777777666655433 33343332 3468999999999999999999873 45689999999999
Q ss_pred HHHHHHhccc-----CCCeEEEEeccccccccCcCccceEEecCC------------------CCChhHHHHHhcccccC
Q 012794 88 QRERTLNGFR-----QGKFTVLVATDVAARGLDIPNVDLIIHYEL------------------PNDPETFVHRSGRTGRA 144 (456)
Q Consensus 88 ~R~~~l~~Fr-----~g~~~vLVaTdv~~~Gidip~v~~VI~~~~------------------p~~~~~y~qr~GR~gR~ 144 (456)
+|.++++.|+ +|..+|||||+++++|||||+|++||++++ |.+.++|+||+|||||.
T Consensus 352 eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~ 431 (773)
T 2xau_A 352 QQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT 431 (773)
T ss_dssp HHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS
T ss_pred HHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC
Confidence 9999999999 999999999999999999999999999888 89999999999999999
Q ss_pred CCCceEEEeeChhhH
Q 012794 145 GKEGTAILMFTSSQR 159 (456)
Q Consensus 145 g~~g~~i~~~~~~e~ 159 (456)
..|.|++|+++.+.
T Consensus 432 -~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 432 -RPGKCFRLYTEEAF 445 (773)
T ss_dssp -SSEEEEESSCHHHH
T ss_pred -CCCEEEEEecHHHh
Confidence 79999999987654
No 32
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.82 E-value=5.6e-20 Score=193.97 Aligned_cols=129 Identities=24% Similarity=0.357 Sum_probs=93.4
Q ss_pred ccHHHHHHHHHHHH---CCCCcEEEEcCChHHHHHHHHHHHhc-----CCE--------EEEeCCCCHHHHHHHHhcccC
Q 012794 35 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-----IAS--------EALHGDISQHQRERTLNGFRQ 98 (456)
Q Consensus 35 ~~k~~~L~~ll~~~---~~~~~~IIF~~t~~~a~~l~~~L~~~-----~~~--------~~lhg~~~~~~R~~~l~~Fr~ 98 (456)
..|+..|.++|... .+..++||||+++.+++.|+..|... +.+ ..+||+|++.+|.+++++|++
T Consensus 370 ~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~ 449 (555)
T 3tbk_A 370 NPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRA 449 (555)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhc
Confidence 46888888888654 45689999999999999999999842 333 445669999999999999999
Q ss_pred -CCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHH
Q 012794 99 -GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165 (456)
Q Consensus 99 -g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~i 165 (456)
+.++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. +.|.+++|+++.+......+
T Consensus 450 ~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 450 SGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp --CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999 999 89999999998776555444
No 33
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.81 E-value=1.8e-20 Score=204.21 Aligned_cols=130 Identities=22% Similarity=0.361 Sum_probs=83.5
Q ss_pred cccHHHHHHHHHHHH---CCCCcEEEEcCChHHHHHHHHHHHh-c----CCEEEE--------eCCCCHHHHHHHHhccc
Q 012794 34 ATSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-I----IASEAL--------HGDISQHQRERTLNGFR 97 (456)
Q Consensus 34 ~~~k~~~L~~ll~~~---~~~~~~IIF~~t~~~a~~l~~~L~~-~----~~~~~l--------hg~~~~~~R~~~l~~Fr 97 (456)
...|+..|.+++... .+..++||||+++.+|+.|++.|.. . +.+..+ |++|++.+|.+++++|+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~ 457 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHH
Confidence 456888899988765 3467999999999999999999985 3 788888 55999999999999999
Q ss_pred C-CCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHH
Q 012794 98 Q-GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165 (456)
Q Consensus 98 ~-g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~i 165 (456)
+ |+++|||||+++++|||+|+|++||+||+|+++++|+||+|| ||. +.|.++++++..+......+
T Consensus 458 ~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 458 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp ---CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred hcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 8 999999999999999999999999999999999999999999 998 78999999998776555444
No 34
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.81 E-value=1.3e-19 Score=192.49 Aligned_cols=141 Identities=22% Similarity=0.251 Sum_probs=115.4
Q ss_pred EEEcCcccHHHHHHHHHHHH-CCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEe
Q 012794 29 AISTTATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVA 106 (456)
Q Consensus 29 ~~~~~~~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVa 106 (456)
.+.....+|..+|..++... ..+.++||||+|++.++.|+..|.+ ++.+.+|||++.+.++..+.++|+.+ .|+||
T Consensus 451 ~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVA 528 (822)
T 3jux_A 451 LVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIA 528 (822)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEE
T ss_pred EEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEE
Confidence 34566778888888877643 4568999999999999999999995 89999999995555555556667666 59999
Q ss_pred ccccccccCcC--------ccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhH-------HHHHHHHHHhCC
Q 012794 107 TDVAARGLDIP--------NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR-------RTVRSLERDVGC 171 (456)
Q Consensus 107 Tdv~~~Gidip--------~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~-------~~~~~ie~~~~~ 171 (456)
||+|+||+||+ ...+||++++|.+.+.|+||+|||||+|.+|.+++|++..+. ..+..+.+.++.
T Consensus 529 TdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~~ 608 (822)
T 3jux_A 529 TNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILKI 608 (822)
T ss_dssp ETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHSSC
T ss_pred cchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHcCC
Confidence 99999999998 566999999999999999999999999999999999987662 344445555543
No 35
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.80 E-value=3.1e-19 Score=193.28 Aligned_cols=128 Identities=23% Similarity=0.398 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccC
Q 012794 37 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLD 115 (456)
Q Consensus 37 k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gid 115 (456)
+..++..|......+.++||||+|+..|+.|++.|.. ++.+..+|++|++.+|.++++.|++|+++|||||+++++|+|
T Consensus 431 ~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlD 510 (661)
T 2d7d_A 431 IDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLD 510 (661)
T ss_dssp HHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCC
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcc
Confidence 3444455555445668999999999999999999985 789999999999999999999999999999999999999999
Q ss_pred cCccceEEecCC-----CCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHH
Q 012794 116 IPNVDLIIHYEL-----PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 165 (456)
Q Consensus 116 ip~v~~VI~~~~-----p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~i 165 (456)
+|+|++||+++. |.+.++|+||+|||||. ..|.+++|+.+.+....+.|
T Consensus 511 ip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i 564 (661)
T 2d7d_A 511 IPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAI 564 (661)
T ss_dssp CTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHH
T ss_pred cCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHH
Confidence 999999999997 99999999999999998 78999999988665544444
No 36
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.80 E-value=7.9e-20 Score=197.63 Aligned_cols=128 Identities=25% Similarity=0.247 Sum_probs=115.4
Q ss_pred EEEcCcccHHHHHHHHHHH-HCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEe
Q 012794 29 AISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVA 106 (456)
Q Consensus 29 ~~~~~~~~k~~~L~~ll~~-~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVa 106 (456)
++.+...+|..+|.+++.. +..+.++||||+|++.++.|+..|.+ ++.+.+||+++.+.++..+.++|+.| .|+||
T Consensus 418 ~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIA 495 (853)
T 2fsf_A 418 LVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIA 495 (853)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEE
T ss_pred EEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEe
Confidence 4556778899999888754 45668999999999999999999985 89999999999988898899999988 59999
Q ss_pred ccccccccCcCc--------------------------------c-----ceEEecCCCCChhHHHHHhcccccCCCCce
Q 012794 107 TDVAARGLDIPN--------------------------------V-----DLIIHYELPNDPETFVHRSGRTGRAGKEGT 149 (456)
Q Consensus 107 Tdv~~~Gidip~--------------------------------v-----~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~ 149 (456)
||+|+||+||+. | .+||++++|.+.+.|+||+|||||+|.+|.
T Consensus 496 TnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~ 575 (853)
T 2fsf_A 496 TNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGS 575 (853)
T ss_dssp ESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred cccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCee
Confidence 999999999987 3 699999999999999999999999999999
Q ss_pred EEEeeChhh
Q 012794 150 AILMFTSSQ 158 (456)
Q Consensus 150 ~i~~~~~~e 158 (456)
+++|++..+
T Consensus 576 s~~fls~eD 584 (853)
T 2fsf_A 576 SRFYLSMED 584 (853)
T ss_dssp EEEEEETTS
T ss_pred EEEEecccH
Confidence 999998765
No 37
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.79 E-value=3.8e-19 Score=197.02 Aligned_cols=124 Identities=20% Similarity=0.337 Sum_probs=75.7
Q ss_pred ccHHHHHHHHHHHH---CCCCcEEEEcCChHHHHHHHHHHHhc-------------CCEEEEeCCCCHHHHHHHHhcccC
Q 012794 35 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-------------IASEALHGDISQHQRERTLNGFRQ 98 (456)
Q Consensus 35 ~~k~~~L~~ll~~~---~~~~~~IIF~~t~~~a~~l~~~L~~~-------------~~~~~lhg~~~~~~R~~~l~~Fr~ 98 (456)
..|+..|..+|... ....++||||+++.+++.|+..|... ..+..+||+|++.+|..++++|++
T Consensus 612 ~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~ 691 (797)
T 4a2q_A 612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 691 (797)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC--------------------------
T ss_pred ChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhc
Confidence 56888888888753 45689999999999999999999742 345667899999999999999999
Q ss_pred -CCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHH
Q 012794 99 -GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 160 (456)
Q Consensus 99 -g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~ 160 (456)
+.++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. +.|.+++|++..+..
T Consensus 692 ~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 692 SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp --CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred cCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 999999999999999999999999999999999999999999 999 899999999876643
No 38
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.79 E-value=6.9e-19 Score=190.68 Aligned_cols=130 Identities=24% Similarity=0.402 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCc
Q 012794 38 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 116 (456)
Q Consensus 38 ~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidi 116 (456)
..++..|......+.++||||+|+..++.|++.|.. ++.+..+|++|++.+|.++++.|++|+++|||||+++++|+|+
T Consensus 426 ~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDi 505 (664)
T 1c4o_A 426 LDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDI 505 (664)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCC
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccC
Confidence 333444444444578999999999999999999985 7899999999999999999999999999999999999999999
Q ss_pred CccceEEecCC-----CCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHH
Q 012794 117 PNVDLIIHYEL-----PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 168 (456)
Q Consensus 117 p~v~~VI~~~~-----p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~ 168 (456)
|+|++||+++. |.+..+|+||+|||||.+ .|.+++++.+.+....+.|++.
T Consensus 506 p~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~~ 561 (664)
T 1c4o_A 506 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIEET 561 (664)
T ss_dssp TTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHHHH
T ss_pred CCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHHHH
Confidence 99999999997 999999999999999995 8999999988777666666543
No 39
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.79 E-value=3e-19 Score=184.06 Aligned_cols=125 Identities=33% Similarity=0.532 Sum_probs=112.9
Q ss_pred CcccHHHHHHHHHHHH---CCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeC--------CCCHHHHHHHHhcccCCC
Q 012794 33 TATSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHG--------DISQHQRERTLNGFRQGK 100 (456)
Q Consensus 33 ~~~~k~~~L~~ll~~~---~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg--------~~~~~~R~~~l~~Fr~g~ 100 (456)
....|+..|.++|..+ ....++||||+++..++.+++.|.. ++.+..+|| +|++.+|+++++.|+++.
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~ 419 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE 419 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTS
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCC
Confidence 4557888899988775 4678999999999999999999985 789999999 999999999999999999
Q ss_pred eEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhh
Q 012794 101 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 158 (456)
Q Consensus 101 ~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e 158 (456)
++|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+ |.+++|+.+.+
T Consensus 420 ~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t 476 (494)
T 1wp9_A 420 FNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGT 476 (494)
T ss_dssp CSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTS
T ss_pred ceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCC
Confidence 9999999999999999999999999999999999999999999998 99999988653
No 40
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.78 E-value=3e-19 Score=172.98 Aligned_cols=122 Identities=16% Similarity=0.289 Sum_probs=96.5
Q ss_pred cCcccHHHHHHHHHHHH-CCCCcEEEEcCChHHHHHHHHHHHh--cCCEEEEeCCCCHHHHHHHHhcccCC-CeE-EEEe
Q 012794 32 TTATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQG-KFT-VLVA 106 (456)
Q Consensus 32 ~~~~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~a~~l~~~L~~--~~~~~~lhg~~~~~~R~~~l~~Fr~g-~~~-vLVa 106 (456)
.....|+..|.++|... ..+.++||||+++..++.|+..|.. ++.+..+||++++.+|+++++.|+++ .++ +||+
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 34568999999998765 3568999999999999999999984 78899999999999999999999998 677 7899
Q ss_pred ccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEe
Q 012794 107 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 153 (456)
Q Consensus 107 Tdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~ 153 (456)
|+++++|||++.+++||+||+||++..|+||+||++|.|+++.++++
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~ 218 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 218 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEE
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEE
Confidence 99999999999999999999999999999999999999987765443
No 41
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.77 E-value=1.9e-18 Score=187.32 Aligned_cols=129 Identities=24% Similarity=0.282 Sum_probs=114.0
Q ss_pred EEEcCcccHHHHHHHHHHH-HCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEe
Q 012794 29 AISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVA 106 (456)
Q Consensus 29 ~~~~~~~~k~~~L~~ll~~-~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVa 106 (456)
++.+...+|..+|...+.. +..+.++||||+|++.++.|+..|.+ ++.+.+||+++.+.++..+.++|+.| .|+||
T Consensus 437 ~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIA 514 (922)
T 1nkt_A 437 LIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVA 514 (922)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEE
T ss_pred EEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEe
Confidence 4456677899888887754 45567999999999999999999985 89999999999888888888999988 58999
Q ss_pred ccccccccCcCcc----------------------------------------------------ceEEecCCCCChhHH
Q 012794 107 TDVAARGLDIPNV----------------------------------------------------DLIIHYELPNDPETF 134 (456)
Q Consensus 107 Tdv~~~Gidip~v----------------------------------------------------~~VI~~~~p~~~~~y 134 (456)
||+|+||+||+.+ .+||+++.|.+...|
T Consensus 515 TnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy 594 (922)
T 1nkt_A 515 TNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRID 594 (922)
T ss_dssp ETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHH
T ss_pred cchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHH
Confidence 9999999999964 599999999999999
Q ss_pred HHHhcccccCCCCceEEEeeChhhH
Q 012794 135 VHRSGRTGRAGKEGTAILMFTSSQR 159 (456)
Q Consensus 135 ~qr~GR~gR~g~~g~~i~~~~~~e~ 159 (456)
+||+|||||+|.+|.+++|++..+.
T Consensus 595 ~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 595 NQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHHhcccccCCCCeeEEEEechhHH
Confidence 9999999999999999999987654
No 42
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.77 E-value=1.7e-19 Score=186.70 Aligned_cols=114 Identities=23% Similarity=0.288 Sum_probs=96.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEe-----
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----- 124 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~----- 124 (456)
..++||||+|++.|+.+++.|.. ++.+..+|| ++|+++++.|++++++|||||+++++|||+| +++||+
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~ 251 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAF 251 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccc
Confidence 57999999999999999999985 789999999 4688999999999999999999999999999 999986
Q ss_pred --------------cCCCCChhHHHHHhcccccC-CCCceEEEee---ChhhHHHHHHHHHHh
Q 012794 125 --------------YELPNDPETFVHRSGRTGRA-GKEGTAILMF---TSSQRRTVRSLERDV 169 (456)
Q Consensus 125 --------------~~~p~~~~~y~qr~GR~gR~-g~~g~~i~~~---~~~e~~~~~~ie~~~ 169 (456)
++.|.+.++|+||+|||||. +++|.|++|+ ++.+...++.++..+
T Consensus 252 ~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 252 KPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp EEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred eeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 88999999999999999998 6899999996 567777777777765
No 43
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.77 E-value=1.4e-18 Score=195.28 Aligned_cols=124 Identities=20% Similarity=0.337 Sum_probs=76.5
Q ss_pred ccHHHHHHHHHHHH---CCCCcEEEEcCChHHHHHHHHHHHhc-------------CCEEEEeCCCCHHHHHHHHhcccC
Q 012794 35 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-------------IASEALHGDISQHQRERTLNGFRQ 98 (456)
Q Consensus 35 ~~k~~~L~~ll~~~---~~~~~~IIF~~t~~~a~~l~~~L~~~-------------~~~~~lhg~~~~~~R~~~l~~Fr~ 98 (456)
..|+..|.++|... ..+.++||||+|+.+++.|+..|... ..+..+||+|++.+|.+++++|++
T Consensus 612 ~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~ 691 (936)
T 4a2w_A 612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 691 (936)
T ss_dssp CHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC--------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhc
Confidence 56888888888764 34689999999999999999999842 235566899999999999999999
Q ss_pred -CCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhhHH
Q 012794 99 -GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 160 (456)
Q Consensus 99 -g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~ 160 (456)
|.++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. +.|.+++|++..+..
T Consensus 692 ~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 692 SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp --CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred cCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 999999999999999999999999999999999999999999 999 789999998876543
No 44
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.77 E-value=3.7e-19 Score=201.87 Aligned_cols=158 Identities=18% Similarity=0.296 Sum_probs=125.6
Q ss_pred ccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHhcccCC
Q 012794 20 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQG 99 (456)
Q Consensus 20 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g 99 (456)
....++.++++ ..+|...|.+++... +.++||||+|++.|+.++..|...+.+..+||+| ..+++.|++|
T Consensus 249 ~~~~~i~~~~~---~~~k~~~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~-----~~~l~~F~~G 318 (1054)
T 1gku_B 249 ITVRNVEDVAV---NDESISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNKFRIGIVTATK-----KGDYEKFVEG 318 (1054)
T ss_dssp ECCCCEEEEEE---SCCCTTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSS-----SHHHHHHHHT
T ss_pred cCcCCceEEEe---chhHHHHHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccH-----HHHHHHHHcC
Confidence 44556777776 345667777777654 5789999999999999999998558999999998 4788999999
Q ss_pred CeEEEEe----ccccccccCcCcc-ceEEecCCC----------------------------------------------
Q 012794 100 KFTVLVA----TDVAARGLDIPNV-DLIIHYELP---------------------------------------------- 128 (456)
Q Consensus 100 ~~~vLVa----Tdv~~~Gidip~v-~~VI~~~~p---------------------------------------------- 128 (456)
+++|||| |+++++|||+|+| ++||++|+|
T Consensus 319 ~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (1054)
T 1gku_B 319 EIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVRE 398 (1054)
T ss_dssp SCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHH
T ss_pred CCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 9999999999996 999999999
Q ss_pred -------------------------CChhHHHHHhcccccCCCCc--eEEEeeChhhHHHHHHHHHHhC---CCceecCC
Q 012794 129 -------------------------NDPETFVHRSGRTGRAGKEG--TAILMFTSSQRRTVRSLERDVG---CKFEFVSP 178 (456)
Q Consensus 129 -------------------------~~~~~y~qr~GR~gR~g~~g--~~i~~~~~~e~~~~~~ie~~~~---~~~~~~~~ 178 (456)
.|..+|+||+|||||+|+.| .+++++...+...+..|++.++ ..+..+..
T Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~~~~~~~~~~~ 478 (1054)
T 1gku_B 399 ILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKLYDIEFKSIDE 478 (1054)
T ss_dssp HHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHTTSSCCCBCSC
T ss_pred HHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhhccCccccCCc
Confidence 78999999999999987665 4777777777888888888877 45566666
Q ss_pred CCHHHHHHH
Q 012794 179 PVVEDVLES 187 (456)
Q Consensus 179 p~~~~i~~~ 187 (456)
+..+++++.
T Consensus 479 ~~~~~l~~~ 487 (1054)
T 1gku_B 479 VDFEKLSRE 487 (1054)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHh
Confidence 666666654
No 45
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=188.34 Aligned_cols=103 Identities=28% Similarity=0.518 Sum_probs=88.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-------cCCEEEEeCC--------CCHHHHHHHHhcccCCCeEEEEeccccccccC
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-------IIASEALHGD--------ISQHQRERTLNGFRQGKFTVLVATDVAARGLD 115 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-------~~~~~~lhg~--------~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gid 115 (456)
..++||||+|+.+++.|++.|.. ++.+..+||+ |++.+|.+++++|++|+++|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 68999999999999999999985 4889999999 99999999999999999999999999999999
Q ss_pred cCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeCh
Q 012794 116 IPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 156 (456)
Q Consensus 116 ip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~ 156 (456)
+|+|++||+||+|+++..|+||+||++|.| .+++++.+
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 999999999999999999999999976543 44555443
No 46
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.76 E-value=9.6e-19 Score=187.92 Aligned_cols=114 Identities=17% Similarity=0.271 Sum_probs=103.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceE-------
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI------- 122 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~V------- 122 (456)
.+++||||+|++.|+.+++.|.. ++.+..||++ +|+++++.|++++++||||||++++|||+| +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~ 429 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCL 429 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECccee
Confidence 57999999999999999999985 7899999985 688899999999999999999999999998 8888
Q ss_pred -------------EecCCCCChhHHHHHhcccccCC-CCceEEEeeC---hhhHHHHHHHHHHh
Q 012794 123 -------------IHYELPNDPETFVHRSGRTGRAG-KEGTAILMFT---SSQRRTVRSLERDV 169 (456)
Q Consensus 123 -------------I~~~~p~~~~~y~qr~GR~gR~g-~~g~~i~~~~---~~e~~~~~~ie~~~ 169 (456)
|+|++|.+.++|+||+|||||+| .+|.+++|+. +.+...++.+++.+
T Consensus 430 ~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 430 KPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred cceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 77788999999999999999996 4899999997 77777888888765
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.76 E-value=1.2e-18 Score=188.61 Aligned_cols=115 Identities=17% Similarity=0.254 Sum_probs=103.5
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEe----
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH---- 124 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~---- 124 (456)
..+++||||+|+++++.+++.|.. .+.+..|||+ +|+++++.|++++++|||||+++++|||+| +++|||
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~ 483 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKS 483 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCc
Confidence 468999999999999999999985 7899999994 799999999999999999999999999999 999998
Q ss_pred ----------------cCCCCChhHHHHHhcccccC-CCCceEEEee---ChhhHHHHHHHHHHh
Q 012794 125 ----------------YELPNDPETFVHRSGRTGRA-GKEGTAILMF---TSSQRRTVRSLERDV 169 (456)
Q Consensus 125 ----------------~~~p~~~~~y~qr~GR~gR~-g~~g~~i~~~---~~~e~~~~~~ie~~~ 169 (456)
|++|.+.++|+||+|||||. +++|.|++|+ .+.+...++.++..+
T Consensus 484 ~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 484 VKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp CCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred ccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 67899999999999999998 7899999996 566666666666654
No 48
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.74 E-value=1.7e-18 Score=185.59 Aligned_cols=123 Identities=25% Similarity=0.380 Sum_probs=106.3
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEE-----
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII----- 123 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI----- 123 (456)
..+++||||+|++.++.+++.|.+ ++.+..+||+|++++ |+++..+||||||++++|||+| |++||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~ 466 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTC 466 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcc
Confidence 468999999999999999999985 789999999999874 5556669999999999999997 99988
Q ss_pred -----ecC-----------CCCChhHHHHHhcccccCCCCceEEEeeChhhHHH--H--HHHHHHhCCCceecCCCCHH
Q 012794 124 -----HYE-----------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT--V--RSLERDVGCKFEFVSPPVVE 182 (456)
Q Consensus 124 -----~~~-----------~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~--~--~~ie~~~~~~~~~~~~p~~~ 182 (456)
||| +|.+.++|+||+||||| +++|. ++|+++.+... + ..+++..+..+++..+|..+
T Consensus 467 ~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~~~l~~~~ 543 (666)
T 3o8b_A 467 VTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAE 543 (666)
T ss_dssp EEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHHTSCCCHHH
T ss_pred cccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcCCcccccCCchH
Confidence 677 89999999999999999 99999 99998877554 4 77777777777777776544
No 49
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.74 E-value=7.3e-18 Score=191.57 Aligned_cols=155 Identities=19% Similarity=0.365 Sum_probs=123.7
Q ss_pred cccccCeeEEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEE-EEeCCCCHHHHHHHHhcc
Q 012794 19 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASE-ALHGDISQHQRERTLNGF 96 (456)
Q Consensus 19 ~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~-~lhg~~~~~~R~~~l~~F 96 (456)
.....++.+.++.+ +|...|..++... +.++||||+|+..|+.|+..|.. ++.+. .+||+ |.+ ++.|
T Consensus 282 ~~~~~~i~~~~~~~---~k~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F 350 (1104)
T 4ddu_A 282 VSVARNITHVRISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDF 350 (1104)
T ss_dssp CCCCCCEEEEEESC---CCHHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHH
T ss_pred CCCcCCceeEEEec---CHHHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHH
Confidence 34566788888766 4566677777765 48999999999999999999985 78888 99993 555 9999
Q ss_pred cCCCeEEEEe----ccccccccCcCc-cceEEecCCCC------------------------------------------
Q 012794 97 RQGKFTVLVA----TDVAARGLDIPN-VDLIIHYELPN------------------------------------------ 129 (456)
Q Consensus 97 r~g~~~vLVa----Tdv~~~Gidip~-v~~VI~~~~p~------------------------------------------ 129 (456)
++|+++|||| |+++++|||+|+ |++|||||+|.
T Consensus 351 ~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~ 430 (1104)
T 4ddu_A 351 KVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKE 430 (1104)
T ss_dssp HHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHH
T ss_pred HCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999 99999999998
Q ss_pred ------------------------------ChhHHHHHhcccccCCC----CceEEEeeChhhHHHHHHHHHHhC----C
Q 012794 130 ------------------------------DPETFVHRSGRTGRAGK----EGTAILMFTSSQRRTVRSLERDVG----C 171 (456)
Q Consensus 130 ------------------------------~~~~y~qr~GR~gR~g~----~g~~i~~~~~~e~~~~~~ie~~~~----~ 171 (456)
|+.+|+||+|||||.+. +|.+++++ .+...++.|++.+. .
T Consensus 431 ~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~~~~~~ 508 (1104)
T 4ddu_A 431 HLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEE 508 (1104)
T ss_dssp CCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHTCC
T ss_pred HhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHhhhccc
Confidence 88899999999999653 45666666 56677777777664 4
Q ss_pred CceecCCCCHHHHHH
Q 012794 172 KFEFVSPPVVEDVLE 186 (456)
Q Consensus 172 ~~~~~~~p~~~~i~~ 186 (456)
.+.++.....+++++
T Consensus 509 ~~~~~~~~~~~~~~~ 523 (1104)
T 4ddu_A 509 EIIEEAEANWKELVH 523 (1104)
T ss_dssp CEEEGGGCCHHHHHH
T ss_pred ccccccccCHHHHHH
Confidence 444444444455544
No 50
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.74 E-value=1.9e-17 Score=180.85 Aligned_cols=119 Identities=26% Similarity=0.515 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHhc-------------------------------CCEEEEeCCCC
Q 012794 37 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-------------------------------IASEALHGDIS 85 (456)
Q Consensus 37 k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~-------------------------------~~~~~lhg~~~ 85 (456)
+..++.+++ ..++++||||+|+++++.++..|... ..+.++||+|+
T Consensus 231 ~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~ 307 (702)
T 2p6r_A 231 FEELVEECV---AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLL 307 (702)
T ss_dssp HHHHHHHHH---HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSC
T ss_pred HHHHHHHHH---hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCC
Confidence 455554444 35789999999999999999988632 35888999999
Q ss_pred HHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEe----cC---CCCChhHHHHHhcccccCC--CCceEEEeeCh
Q 012794 86 QHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE---LPNDPETFVHRSGRTGRAG--KEGTAILMFTS 156 (456)
Q Consensus 86 ~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~----~~---~p~~~~~y~qr~GR~gR~g--~~g~~i~~~~~ 156 (456)
+++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.|++++..
T Consensus 308 ~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 387 (702)
T 2p6r_A 308 NGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGK 387 (702)
T ss_dssp HHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCG
T ss_pred HHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecC
Confidence 999999999999999999999999999999999999998 66 7899999999999999988 57999999998
Q ss_pred hh
Q 012794 157 SQ 158 (456)
Q Consensus 157 ~e 158 (456)
.+
T Consensus 388 ~~ 389 (702)
T 2p6r_A 388 RD 389 (702)
T ss_dssp GG
T ss_pred cc
Confidence 77
No 51
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.74 E-value=1.8e-17 Score=181.58 Aligned_cols=136 Identities=24% Similarity=0.329 Sum_probs=112.3
Q ss_pred cHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHhc----------------------------------CCEEEEe
Q 012794 36 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI----------------------------------IASEALH 81 (456)
Q Consensus 36 ~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~----------------------------------~~~~~lh 81 (456)
.+..++.+++ .+++++||||+|+++|+.++..|.+. ..+.++|
T Consensus 225 ~~~~~~~~~~---~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h 301 (720)
T 2zj8_A 225 SWEELVYDAI---RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHH 301 (720)
T ss_dssp STTHHHHHHH---HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEEC
T ss_pred HHHHHHHHHH---hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeec
Confidence 3444444444 35689999999999999999988742 1489999
Q ss_pred CCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEe----cC----CCCChhHHHHHhcccccCC--CCceEE
Q 012794 82 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE----LPNDPETFVHRSGRTGRAG--KEGTAI 151 (456)
Q Consensus 82 g~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~----~~----~p~~~~~y~qr~GR~gR~g--~~g~~i 151 (456)
++|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.|+
T Consensus 302 ~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~ 381 (720)
T 2zj8_A 302 AGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGI 381 (720)
T ss_dssp TTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEE
Confidence 9999999999999999999999999999999999999999998 77 6899999999999999988 578999
Q ss_pred EeeChhhHHHHHHHHHHhCCCceec
Q 012794 152 LMFTSSQRRTVRSLERDVGCKFEFV 176 (456)
Q Consensus 152 ~~~~~~e~~~~~~ie~~~~~~~~~~ 176 (456)
+++++.+. ...+++++...++.+
T Consensus 382 ~l~~~~~~--~~~~~~~~~~~~~~i 404 (720)
T 2zj8_A 382 IVSTSDDP--REVMNHYIFGKPEKL 404 (720)
T ss_dssp EECSSSCH--HHHHHHHTTSCCCCC
T ss_pred EEecCccH--HHHHHHHhcCCCCCc
Confidence 99988762 233445555444444
No 52
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.74 E-value=2.2e-17 Score=180.73 Aligned_cols=129 Identities=26% Similarity=0.431 Sum_probs=104.3
Q ss_pred HHCCCCcEEEEcCChHHHHHHHHHHHhc-------------------------------------CCEEEEeCCCCHHHH
Q 012794 47 VYAKGGKTIVFTQTKRDADEVSLALTSI-------------------------------------IASEALHGDISQHQR 89 (456)
Q Consensus 47 ~~~~~~~~IIF~~t~~~a~~l~~~L~~~-------------------------------------~~~~~lhg~~~~~~R 89 (456)
.+..++++||||+|+++++.++..|.+. ..+.++||+|++.+|
T Consensus 248 ~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r 327 (715)
T 2va8_A 248 SLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALR 327 (715)
T ss_dssp HHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred HHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHH
Confidence 3446789999999999999999998742 248999999999999
Q ss_pred HHHHhcccCCCeEEEEeccccccccCcCccceEEe----cC-------CCCChhHHHHHhcccccCC--CCceEEEeeCh
Q 012794 90 ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE-------LPNDPETFVHRSGRTGRAG--KEGTAILMFTS 156 (456)
Q Consensus 90 ~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~----~~-------~p~~~~~y~qr~GR~gR~g--~~g~~i~~~~~ 156 (456)
..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.|+++++.
T Consensus 328 ~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 407 (715)
T 2va8_A 328 DLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRD 407 (715)
T ss_dssp HHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSC
T ss_pred HHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCC
Confidence 99999999999999999999999999999999999 99 8999999999999999988 47999999987
Q ss_pred hhHHHHHHHHHHhCCCceec
Q 012794 157 SQRRTVRSLERDVGCKFEFV 176 (456)
Q Consensus 157 ~e~~~~~~ie~~~~~~~~~~ 176 (456)
.+. ....+++++....+.+
T Consensus 408 ~~~-~~~~~~~~l~~~~e~~ 426 (715)
T 2va8_A 408 KED-VDRVFKKYVLSDVEPI 426 (715)
T ss_dssp GGG-HHHHHHHTTSSCCCCC
T ss_pred chH-HHHHHHHHHcCCCCCc
Confidence 653 2223444444444443
No 53
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.72 E-value=1.1e-17 Score=173.64 Aligned_cols=101 Identities=19% Similarity=0.304 Sum_probs=93.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEecC---
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE--- 126 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~--- 126 (456)
.+++||||+|+++|+.+++.|.+ ++.+..+|+++. +++++.|++|+++|||||+++++|||+|+ ++||||+
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~ 262 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCL 262 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcc
Confidence 56999999999999999999985 788999999864 57999999999999999999999999999 9999999
Q ss_pred -----------------CCCChhHHHHHhcccccCCC-CceEEEeeCh
Q 012794 127 -----------------LPNDPETFVHRSGRTGRAGK-EGTAILMFTS 156 (456)
Q Consensus 127 -----------------~p~~~~~y~qr~GR~gR~g~-~g~~i~~~~~ 156 (456)
.|.+.++|+||+|||||.|+ .|.+++|+..
T Consensus 263 ~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 263 KPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999997 8889888743
No 54
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.72 E-value=1.8e-18 Score=179.80 Aligned_cols=102 Identities=19% Similarity=0.318 Sum_probs=92.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEe-----
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----- 124 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~----- 124 (456)
.+++||||+|++.|+.+++.|.. ++.+..||++ +|+++++.|++|+++|||||+++++|||+|+ ++||+
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~ 264 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSV 264 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEEC
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccc
Confidence 57999999999999999999985 7899999995 6889999999999999999999999999999 99999
Q ss_pred ---------------cCCCCChhHHHHHhcccccCCC-CceEEEeeChh
Q 012794 125 ---------------YELPNDPETFVHRSGRTGRAGK-EGTAILMFTSS 157 (456)
Q Consensus 125 ---------------~~~p~~~~~y~qr~GR~gR~g~-~g~~i~~~~~~ 157 (456)
|++|.+.++|+||+|||||.|+ +|.+++|+.+.
T Consensus 265 ~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 265 KPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7799999999999999999997 89999999874
No 55
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.71 E-value=4.1e-17 Score=176.31 Aligned_cols=122 Identities=20% Similarity=0.284 Sum_probs=104.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccC--CCeEEEEeccccccccCcCccceEEecCC-
Q 012794 52 GKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ--GKFTVLVATDVAARGLDIPNVDLIIHYEL- 127 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~--g~~~vLVaTdv~~~Gidip~v~~VI~~~~- 127 (456)
...||||+|+++++.+++.|.+ .+.+.++||+|++++|+++++.|++ +.++|||||+++++|||+ ++++||++++
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcc
Confidence 4569999999999999999985 7899999999999999999999999 889999999999999999 8999999999
Q ss_pred -------------CCChhHHHHHhcccccCCCC---ceEEEeeChhhHHHHHHHHHHhCCCcee
Q 012794 128 -------------PNDPETFVHRSGRTGRAGKE---GTAILMFTSSQRRTVRSLERDVGCKFEF 175 (456)
Q Consensus 128 -------------p~~~~~y~qr~GR~gR~g~~---g~~i~~~~~~e~~~~~~ie~~~~~~~~~ 175 (456)
|.+..+|+||+|||||.|.. |.|++++.. +...++.+.......++.
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~-d~~~~~~~~~~~~~~i~~ 462 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE-DLSLLKEILKRPVDPIRA 462 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT-HHHHHHHHHHSCCCCCCC
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc-hHHHHHHHHhcCcchhhh
Confidence 88999999999999999964 666666544 445556665554444444
No 56
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.70 E-value=9.5e-17 Score=180.97 Aligned_cols=115 Identities=24% Similarity=0.410 Sum_probs=102.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-cC---------------------------------------CEEEEeCCCCHHHHH
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-II---------------------------------------ASEALHGDISQHQRE 90 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-~~---------------------------------------~~~~lhg~~~~~~R~ 90 (456)
..++||||+|+..|+.++..|.. .+ .+.++||+|++.+|+
T Consensus 343 ~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~ 422 (1010)
T 2xgj_A 343 YNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKE 422 (1010)
T ss_dssp CCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHH
Confidence 46899999999999999988864 22 278899999999999
Q ss_pred HHHhcccCCCeEEEEeccccccccCcCccceEEe----cCC----CCChhHHHHHhcccccCCC--CceEEEeeChh-hH
Q 012794 91 RTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YEL----PNDPETFVHRSGRTGRAGK--EGTAILMFTSS-QR 159 (456)
Q Consensus 91 ~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~----~~~----p~~~~~y~qr~GR~gR~g~--~g~~i~~~~~~-e~ 159 (456)
.+++.|++|.++|||||+++++|||+|++++||+ ||. |.++..|+||+|||||.|. .|.|++++.+. +.
T Consensus 423 ~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~ 502 (1010)
T 2xgj_A 423 VIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEP 502 (1010)
T ss_dssp HHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCH
T ss_pred HHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCH
Confidence 9999999999999999999999999999999999 999 8999999999999999996 59999999865 54
Q ss_pred HHHHHH
Q 012794 160 RTVRSL 165 (456)
Q Consensus 160 ~~~~~i 165 (456)
..+..+
T Consensus 503 ~~~~~l 508 (1010)
T 2xgj_A 503 QVAKGM 508 (1010)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 455544
No 57
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.69 E-value=5.7e-17 Score=184.32 Aligned_cols=116 Identities=25% Similarity=0.408 Sum_probs=97.3
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHh-cC---------------------------------------CEEEEeCCCCHHHH
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTS-II---------------------------------------ASEALHGDISQHQR 89 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~-~~---------------------------------------~~~~lhg~~~~~~R 89 (456)
...++||||+|+..|+.++..|.. .+ .+.++||+|++.+|
T Consensus 440 ~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R 519 (1108)
T 3l9o_A 440 KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILK 519 (1108)
T ss_dssp TCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHH
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHH
Confidence 356999999999999999998753 11 17899999999999
Q ss_pred HHHHhcccCCCeEEEEeccccccccCcCccceEEecCCCC--------ChhHHHHHhcccccCC--CCceEEEeeChh-h
Q 012794 90 ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN--------DPETFVHRSGRTGRAG--KEGTAILMFTSS-Q 158 (456)
Q Consensus 90 ~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~--------~~~~y~qr~GR~gR~g--~~g~~i~~~~~~-e 158 (456)
+.+++.|++|.++|||||+++++|||+|++++||+++.|+ ++..|+||+|||||.| ..|.|++++.+. +
T Consensus 520 ~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~ 599 (1108)
T 3l9o_A 520 EVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKME 599 (1108)
T ss_dssp HHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCC
T ss_pred HHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcC
Confidence 9999999999999999999999999999999999887643 6677999999999999 678999988765 3
Q ss_pred HHHHHHH
Q 012794 159 RRTVRSL 165 (456)
Q Consensus 159 ~~~~~~i 165 (456)
...+..+
T Consensus 600 ~~~~~~l 606 (1108)
T 3l9o_A 600 PQVAKGM 606 (1108)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344444
No 58
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.68 E-value=1.5e-17 Score=173.01 Aligned_cols=116 Identities=25% Similarity=0.446 Sum_probs=104.1
Q ss_pred CcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecccccc
Q 012794 33 TATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 112 (456)
Q Consensus 33 ~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~ 112 (456)
....|...|.+++... .+.++||||++++.++.+++.|. +..+||++++.+|++++++|++++++|||||+++++
T Consensus 332 ~~~~k~~~l~~~l~~~-~~~k~lvF~~~~~~~~~l~~~l~----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~ 406 (472)
T 2fwr_A 332 NSKNKIRKLREILERH-RKDKIIIFTRHNELVYRISKVFL----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDE 406 (472)
T ss_dssp SCSHHHHHHHHHHHHT-SSSCBCCBCSCHHHHHHHHHHTT----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCS
T ss_pred cChHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHhC----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhc
Confidence 4557888899988874 56899999999999999998874 678999999999999999999999999999999999
Q ss_pred ccCcCccceEEecCCCCChhHHHHHhcccccCCCC-ceEEEe
Q 012794 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE-GTAILM 153 (456)
Q Consensus 113 Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~-g~~i~~ 153 (456)
|+|+|++++||++++|+++..|+||+||++|.|+. +.++++
T Consensus 407 Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~ 448 (472)
T 2fwr_A 407 GIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 448 (472)
T ss_dssp SSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEE
T ss_pred CcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEE
Confidence 99999999999999999999999999999999854 454443
No 59
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.68 E-value=1.3e-16 Score=182.26 Aligned_cols=121 Identities=21% Similarity=0.354 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh---cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccc
Q 012794 37 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 113 (456)
Q Consensus 37 k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~G 113 (456)
+..++..++..+..++++||||+++++++.+++.|.+ .+.+..+||+|++.+|++++++|++++++|||||+++++|
T Consensus 798 ~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~G 877 (1151)
T 2eyq_A 798 SMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETG 877 (1151)
T ss_dssp HHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGG
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceee
Confidence 4455566677776788999999999999999999985 4689999999999999999999999999999999999999
Q ss_pred cCcCccceEEecCC-CCChhHHHHHhcccccCCCCceEEEeeChh
Q 012794 114 LDIPNVDLIIHYEL-PNDPETFVHRSGRTGRAGKEGTAILMFTSS 157 (456)
Q Consensus 114 idip~v~~VI~~~~-p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~ 157 (456)
||+|++++||+++. +.++.+|+||+||+||.|+.|.|++++.+.
T Consensus 878 iDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 878 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp SCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred ecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 99999999999988 579999999999999999999999998764
No 60
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.68 E-value=1.4e-17 Score=182.57 Aligned_cols=124 Identities=21% Similarity=0.385 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHCCCCcEEEEcCChH--------HHHHHHHHHHh----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEE
Q 012794 37 KRTILSDLITVYAKGGKTIVFTQTKR--------DADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVL 104 (456)
Q Consensus 37 k~~~L~~ll~~~~~~~~~IIF~~t~~--------~a~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vL 104 (456)
...++..+.+....+.+++|||++.+ .++.+++.|.+ .+.+..+||+|++.+|++++++|++|+++||
T Consensus 564 ~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~IL 643 (780)
T 1gm5_A 564 VNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDIL 643 (780)
T ss_dssp HHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBC
T ss_pred HHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEE
Confidence 34444444455566789999999764 47778888876 3578999999999999999999999999999
Q ss_pred EeccccccccCcCccceEEecCCCC-ChhHHHHHhcccccCCCCceEEEeeChhhHH
Q 012794 105 VATDVAARGLDIPNVDLIIHYELPN-DPETFVHRSGRTGRAGKEGTAILMFTSSQRR 160 (456)
Q Consensus 105 VaTdv~~~Gidip~v~~VI~~~~p~-~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~ 160 (456)
|||+++++|||+|++++||+++.|. +...|+||+||+||.|+.|.|++++.+.+..
T Consensus 644 VaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~ 700 (780)
T 1gm5_A 644 VSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE 700 (780)
T ss_dssp CCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH
T ss_pred EECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH
Confidence 9999999999999999999999996 7899999999999999999999999743333
No 61
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.66 E-value=2.3e-16 Score=165.31 Aligned_cols=120 Identities=17% Similarity=0.295 Sum_probs=103.5
Q ss_pred cccHHHHHHHHHHHH-CCCCcEEEEcCChHHHHHHHHHHHh--cCCEEEEeCCCCHHHHHHHHhcccCC-CeE-EEEecc
Q 012794 34 ATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQG-KFT-VLVATD 108 (456)
Q Consensus 34 ~~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~a~~l~~~L~~--~~~~~~lhg~~~~~~R~~~l~~Fr~g-~~~-vLVaTd 108 (456)
...|+..|.+++... ..+.++||||+++..++.++..|.. ++.+..+||++++.+|+++++.|+++ ..+ +||+|+
T Consensus 323 ~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~ 402 (500)
T 1z63_A 323 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 402 (500)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECC
T ss_pred cchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecc
Confidence 457888888888765 4578999999999999999999984 68899999999999999999999998 565 789999
Q ss_pred ccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEe
Q 012794 109 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 153 (456)
Q Consensus 109 v~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~ 153 (456)
++++|||+|.+++||+||+|+++..|+||+||++|.|+...++++
T Consensus 403 ~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~ 447 (500)
T 1z63_A 403 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 447 (500)
T ss_dssp CC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEE
T ss_pred cccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEE
Confidence 999999999999999999999999999999999999987766444
No 62
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.66 E-value=5.4e-16 Score=174.76 Aligned_cols=136 Identities=23% Similarity=0.315 Sum_probs=107.5
Q ss_pred EEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cC-------------------------------
Q 012794 28 YAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-II------------------------------- 75 (456)
Q Consensus 28 ~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~------------------------------- 75 (456)
++...+...+...|..++... ...++||||+|++.|+.++..|.. ++
T Consensus 314 ~~~~~~~~~~~~~li~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~ 392 (997)
T 4a4z_A 314 FTQDGPSKKTWPEIVNYLRKR-ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQIL 392 (997)
T ss_dssp ---CCCCTTHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHH
T ss_pred ccccccchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHH
Confidence 344445566777777777654 457999999999999999998864 22
Q ss_pred --------CEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccceEEecCC---------CCChhHHHHHh
Q 012794 76 --------ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL---------PNDPETFVHRS 138 (456)
Q Consensus 76 --------~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~---------p~~~~~y~qr~ 138 (456)
.+.++|++|++.+|+.+++.|++|.++|||||+++++|||+|++.+|+ +++ |.++.+|+||+
T Consensus 393 ~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi-~~~~k~dg~~~~~~s~~~y~Qr~ 471 (997)
T 4a4z_A 393 KTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIF-SSIRKHDGNGLRELTPGEFTQMA 471 (997)
T ss_dssp HHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEE-SCSEEEETTEEEECCHHHHHHHH
T ss_pred HHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEE-eccccccCccCCCCCHHHHhHHh
Confidence 478999999999999999999999999999999999999999955555 444 44999999999
Q ss_pred cccccCC--CCceEEEeeC--hhhHHHHHHH
Q 012794 139 GRTGRAG--KEGTAILMFT--SSQRRTVRSL 165 (456)
Q Consensus 139 GR~gR~g--~~g~~i~~~~--~~e~~~~~~i 165 (456)
|||||.| ..|.+++++. ..+...++.+
T Consensus 472 GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 472 GRAGRRGLDSTGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp GGGCCTTTCSSEEEEEECCSSCCCHHHHHHH
T ss_pred cccccCCCCcceEEEEecCCCcchHHHHHHH
Confidence 9999988 5678888873 3344455444
No 63
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.65 E-value=1.6e-16 Score=163.90 Aligned_cols=99 Identities=19% Similarity=0.297 Sum_probs=88.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccccccCcCccce--------
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL-------- 121 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~-------- 121 (456)
.+++||||+|+++++.+++.|.+ .+.+..+||+ +|+++++.|++|+++|||||+++++|||+| +.+
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~ 245 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTI 245 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccc
Confidence 57999999999999999999985 7889999997 578899999999999999999999999999 554
Q ss_pred ---------EEecCCCCChhHHHHHhcccccCCC-CceEEEee
Q 012794 122 ---------IIHYELPNDPETFVHRSGRTGRAGK-EGTAILMF 154 (456)
Q Consensus 122 ---------VI~~~~p~~~~~y~qr~GR~gR~g~-~g~~i~~~ 154 (456)
||+++.|.+.++|+||+||+||.|. .+.++++.
T Consensus 246 ~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 246 KPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred cceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 6788999999999999999999985 45555555
No 64
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.63 E-value=5.1e-16 Score=163.04 Aligned_cols=118 Identities=14% Similarity=0.173 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHH-CC-CCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEec-ccccc
Q 012794 37 KRTILSDLITVY-AK-GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT-DVAAR 112 (456)
Q Consensus 37 k~~~L~~ll~~~-~~-~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaT-dv~~~ 112 (456)
+...+.+++... .. ..++||||+ .++++.|++.|.+ ...+..+||+|++.+|+++++.|++++++||||| +++++
T Consensus 332 ~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~ 410 (510)
T 2oca_A 332 RNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST 410 (510)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc
Confidence 444555555543 22 345677777 8889999999985 5689999999999999999999999999999999 99999
Q ss_pred ccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEeeC
Q 012794 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 155 (456)
Q Consensus 113 Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~ 155 (456)
|+|+|++++||++++|+++..|+|++||+||.|+.+.+++++.
T Consensus 411 GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 411 GISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp SCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999999999999999998774444443
No 65
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.62 E-value=2.7e-15 Score=162.25 Aligned_cols=120 Identities=13% Similarity=0.242 Sum_probs=107.6
Q ss_pred cccHHHHHHHHHHHH--CCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCe---EEEEec
Q 012794 34 ATSKRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF---TVLVAT 107 (456)
Q Consensus 34 ~~~k~~~L~~ll~~~--~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~---~vLVaT 107 (456)
...|+.+|..++... ..+.++||||+++..++.|+..|.. ++.+..+||+|++.+|++++++|+++.. .+||+|
T Consensus 397 ~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st 476 (644)
T 1z3i_X 397 LSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSS 476 (644)
T ss_dssp GSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEG
T ss_pred cChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEec
Confidence 356888888888765 2468999999999999999999984 8999999999999999999999999865 489999
Q ss_pred cccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEEe
Q 012794 108 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 153 (456)
Q Consensus 108 dv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~ 153 (456)
++++.|||++.+++||+||+|+++..|+|++||++|.|++..++++
T Consensus 477 ~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~ 522 (644)
T 1z3i_X 477 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIY 522 (644)
T ss_dssp GGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEE
T ss_pred ccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEE
Confidence 9999999999999999999999999999999999999977655544
No 66
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.60 E-value=1.7e-15 Score=162.04 Aligned_cols=101 Identities=21% Similarity=0.302 Sum_probs=88.6
Q ss_pred HHHHCCCCcEEEEcCChHHHHHHHHHHHhcC---------CEEEEeCCCCHHHHHHHHhcccCCCeE---EEEecccccc
Q 012794 45 ITVYAKGGKTIVFTQTKRDADEVSLALTSII---------ASEALHGDISQHQRERTLNGFRQGKFT---VLVATDVAAR 112 (456)
Q Consensus 45 l~~~~~~~~~IIF~~t~~~a~~l~~~L~~~~---------~~~~lhg~~~~~~R~~~l~~Fr~g~~~---vLVaTdv~~~ 112 (456)
+.......++||||+++.+|+.+++.|.+.. .+..+||++++ +|++++++|++++.+ |||||+++++
T Consensus 433 l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~ 511 (590)
T 3h1t_A 433 MKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTT 511 (590)
T ss_dssp HHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTT
T ss_pred HHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhc
Confidence 4444456899999999999999999997421 27789999864 799999999998766 8899999999
Q ss_pred ccCcCccceEEecCCCCChhHHHHHhcccccCCC
Q 012794 113 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 146 (456)
Q Consensus 113 Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~ 146 (456)
|||+|++++||++++|.++..|+||+||++|.+.
T Consensus 512 GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 512 GVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred CccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 9999999999999999999999999999999764
No 67
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.59 E-value=4.8e-15 Score=174.41 Aligned_cols=124 Identities=19% Similarity=0.261 Sum_probs=106.2
Q ss_pred HHHHHHHCCCCcEEEEcCChHHHHHHHHHHHhc-----------------------------------CCEEEEeCCCCH
Q 012794 42 SDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-----------------------------------IASEALHGDISQ 86 (456)
Q Consensus 42 ~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~-----------------------------------~~~~~lhg~~~~ 86 (456)
...+..+...+++||||+|+..|+.+|..|... ..+.++|++|++
T Consensus 1146 ~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~ 1225 (1724)
T 4f92_B 1146 YHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSP 1225 (1724)
T ss_dssp HHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCH
T ss_pred HHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCH
Confidence 344555667789999999999999888766321 248899999999
Q ss_pred HHHHHHHhcccCCCeEEEEeccccccccCcCccceEEe----------cCCCCChhHHHHHhcccccCCC--CceEEEee
Q 012794 87 HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----------YELPNDPETFVHRSGRTGRAGK--EGTAILMF 154 (456)
Q Consensus 87 ~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~----------~~~p~~~~~y~qr~GR~gR~g~--~g~~i~~~ 154 (456)
.+|..+++.|++|.++|||||+++++|||+|.+.+||. ...|.++.+|+||+|||||+|. .|.|++++
T Consensus 1226 ~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~ 1305 (1724)
T 4f92_B 1226 MERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMC 1305 (1724)
T ss_dssp HHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEe
Confidence 99999999999999999999999999999999999993 3357799999999999999985 69999999
Q ss_pred ChhhHHHHHHH
Q 012794 155 TSSQRRTVRSL 165 (456)
Q Consensus 155 ~~~e~~~~~~i 165 (456)
.+.+...++.+
T Consensus 1306 ~~~~~~~~~~l 1316 (1724)
T 4f92_B 1306 QGSKKDFFKKF 1316 (1724)
T ss_dssp EGGGHHHHHHH
T ss_pred cchHHHHHHHH
Confidence 98887776655
No 68
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.7e-14 Score=159.79 Aligned_cols=138 Identities=17% Similarity=0.336 Sum_probs=118.1
Q ss_pred cccHHHHHHHHHHHH-CCCCcEEEEcCChHHHHHHHHHHH-hcCCEEEEeCCCCHHHHHHHHhcccCCCe---EEEEecc
Q 012794 34 ATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKF---TVLVATD 108 (456)
Q Consensus 34 ~~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~a~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~---~vLVaTd 108 (456)
...|+.+|..+|..+ ..+.++||||.....++.|+..|. .++.+..+||.+++.+|.++++.|+++.. .+||+|.
T Consensus 554 ~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~ 633 (800)
T 3mwy_W 554 SSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTR 633 (800)
T ss_dssp TCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHH
T ss_pred cChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecc
Confidence 356899999999876 346799999999999999999998 48999999999999999999999998654 4999999
Q ss_pred ccccccCcCccceEEecCCCCChhHHHHHhcccccCCCCceEEE--eeCh--hhHHHHHHHHHHhCC
Q 012794 109 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL--MFTS--SQRRTVRSLERDVGC 171 (456)
Q Consensus 109 v~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~--~~~~--~e~~~~~~ie~~~~~ 171 (456)
+++.|||++.+++||+||+|+++..++||+||++|.|++..+.+ |++. -|...++.++++...
T Consensus 634 agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l 700 (800)
T 3mwy_W 634 AGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMIL 700 (800)
T ss_dssp HHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTS
T ss_pred cccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997765544 3443 366667766666544
No 69
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.54 E-value=6.7e-15 Score=173.22 Aligned_cols=117 Identities=22% Similarity=0.377 Sum_probs=100.1
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHhc--------------------------------------CCEEEEeCCCCHHHHH
Q 012794 49 AKGGKTIVFTQTKRDADEVSLALTSI--------------------------------------IASEALHGDISQHQRE 90 (456)
Q Consensus 49 ~~~~~~IIF~~t~~~a~~l~~~L~~~--------------------------------------~~~~~lhg~~~~~~R~ 90 (456)
....++||||+|++.|+.+|..|.+. ..+.++|++|++.+|.
T Consensus 315 ~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~ 394 (1724)
T 4f92_B 315 AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRT 394 (1724)
T ss_dssp CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHH
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHH
Confidence 34578999999999999888877421 1378999999999999
Q ss_pred HHHhcccCCCeEEEEeccccccccCcCccceEEe----cC------CCCChhHHHHHhcccccCC--CCceEEEeeChhh
Q 012794 91 RTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE------LPNDPETFVHRSGRTGRAG--KEGTAILMFTSSQ 158 (456)
Q Consensus 91 ~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~----~~------~p~~~~~y~qr~GR~gR~g--~~g~~i~~~~~~e 158 (456)
.+++.|++|.++|||||+++++|||+|.+++||. |+ .|.++.+|+||+|||||+| ..|.+++++...+
T Consensus 395 ~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~ 474 (1724)
T 4f92_B 395 LVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGE 474 (1724)
T ss_dssp HHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTT
T ss_pred HHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchh
Confidence 9999999999999999999999999999999995 44 3568999999999999987 5699999988877
Q ss_pred HHHHHHH
Q 012794 159 RRTVRSL 165 (456)
Q Consensus 159 ~~~~~~i 165 (456)
...+..+
T Consensus 475 ~~~~~~l 481 (1724)
T 4f92_B 475 LQYYLSL 481 (1724)
T ss_dssp CCHHHHH
T ss_pred HHHHHHH
Confidence 6555544
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.27 E-value=6.7e-11 Score=133.16 Aligned_cols=120 Identities=11% Similarity=0.111 Sum_probs=94.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-c------------CCE-EEEeCC----------C----------CHH---------
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-I------------IAS-EALHGD----------I----------SQH--------- 87 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-~------------~~~-~~lhg~----------~----------~~~--------- 87 (456)
..++||||+++..|..+++.|.+ . +.+ +++|++ | ++.
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 35899999999999999999874 2 345 445542 2 322
Q ss_pred --------------------HHHHHHhcccCCCeEEEEeccccccccCcCccceEEecCCCCChhHHHHHhcccccCCCC
Q 012794 88 --------------------QRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE 147 (456)
Q Consensus 88 --------------------~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~ 147 (456)
+|..++++|+++.++|||+||++.+|+|+|.+ .|+++|.|.+...|+|++||++|.+..
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCT
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCC
Confidence 48889999999999999999999999999999 788999999999999999999998753
Q ss_pred ----ceEEEeeChhhHHHHHHHHHHhCCC
Q 012794 148 ----GTAILMFTSSQRRTVRSLERDVGCK 172 (456)
Q Consensus 148 ----g~~i~~~~~~e~~~~~~ie~~~~~~ 172 (456)
|.++.|+.. .......|..+....
T Consensus 696 ~K~~G~IVdf~~~-~~~l~~Al~~y~~~~ 723 (1038)
T 2w00_A 696 TKTFGNIVTFRDL-ERSTIDAITLFGDKN 723 (1038)
T ss_dssp TCCSEEEEESSCC-HHHHHHHHHHTSCSS
T ss_pred CCCcEEEEEcccc-HHHHHHHHHHHhCCC
Confidence 666666653 444455555555443
No 71
>2e29_A ATP-dependent RNA helicase DDX50; ATP binding, hydrolase, nuclear protein, nucleotide-binding, RNA-binding, GUCT domain, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.5
Probab=99.06 E-value=3e-10 Score=90.45 Aligned_cols=89 Identities=22% Similarity=0.297 Sum_probs=73.4
Q ss_pred HhCCCCCCCCccccCCCCceEEEEEeecCccccCCCChhHHHHHHHhhCCC-CCCccccEEEeecCccceeeeecCHHHH
Q 012794 230 LSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPT-AADEIGKIHIIADDRVQGAVFDLPEEIA 308 (456)
Q Consensus 230 ~~~~~~~~~~r~l~~~~~g~~t~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~ig~i~~~~~~~~~~~~~dv~~~~a 308 (456)
++|+++ +++|||+++.+|++|+.+..+. ..-.+..++.+|.+..+. ..++|++|+++++. +|++||||++.+
T Consensus 2 ~SG~te-~~~RSLLt~~eG~~Tl~l~~~~----~i~~~~y~w~~L~~~l~e~~~~~v~~m~l~~d~--~GavFDvP~e~~ 74 (92)
T 2e29_A 2 SSGSSG-FEPRSLITSDKGFVTMTLESLE----EIQDVSCAWKELNRKLSSNAVSQITRMCLLKGN--MGVCFDVPTTES 74 (92)
T ss_dssp CCSCSC-CCCCCCCCCCCCEEEEEEECSS----CCSSTHHHHHHHHHHSCHHHHTTCEEEEECTTS--SEEEEEEEHHHH
T ss_pred CCCcCC-CCCcccccCCCCCEEEEEecCC----cccchHHHHHHHHHhcCHHHHhhhCeEEEecCC--CEEEEECcHHHH
Confidence 467777 5569999999999999998875 345788899999985543 55689999999986 599999999999
Q ss_pred HHHHhhcCCCCCceeec
Q 012794 309 KELLNKQIPPGNTISKI 325 (456)
Q Consensus 309 ~~~~~~~~~~g~~l~~~ 325 (456)
++++..|.+..+.++++
T Consensus 75 ~~~~~~~~~~~~~l~v~ 91 (92)
T 2e29_A 75 ERLQAEWHDSDWILSVP 91 (92)
T ss_dssp HHHHHHCCSSSCEEECC
T ss_pred HHHHhhCCCCceEEEec
Confidence 99999987644767665
No 72
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=98.34 E-value=1.6e-07 Score=56.51 Aligned_cols=18 Identities=44% Similarity=1.198 Sum_probs=16.4
Q ss_pred CCcccCCCCCcCcCCCCC
Q 012794 439 GACFNCGKSGHRASECPN 456 (456)
Q Consensus 439 ~~~~~c~~~gh~~~~~p~ 456 (456)
..||+||++||+|+|||+
T Consensus 3 ~~Cf~CG~~GH~ardC~~ 20 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKE 20 (26)
T ss_dssp CBCTTTCCBSSCTTTTTC
T ss_pred CeeEeCCCCCcccccCCC
Confidence 459999999999999995
No 73
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=98.27 E-value=4.9e-07 Score=69.50 Aligned_cols=61 Identities=16% Similarity=0.275 Sum_probs=52.4
Q ss_pred EEEEEeecCccccCCCChhHHHHHHHhhCCCCCCccccEEEeecCccceeeeecCHHHHHHHHhhcCC
Q 012794 250 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 317 (456)
Q Consensus 250 ~t~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ig~i~~~~~~~~~~~~~dv~~~~a~~~~~~~~~ 317 (456)
+|++++.++ ++++.|++|+++|++...+...+||+|+|+++| |+|+||++.++++++....
T Consensus 1 ~~~~i~~Gr---k~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~----s~v~v~~~~~~~~~~~l~~ 61 (76)
T 2g0c_A 1 MKLYFNGGK---KKKIRAVDFVGTIAKIDGVSADDIGIITIMDNA----SYVEILNGKGPHVLKVMKN 61 (76)
T ss_dssp CEEEESCCC---C----CHHHHHHHHTSTTCCGGGEEEEEECSSC----EEEEECTTCHHHHHHHHTT
T ss_pred CEEEEeCCC---ccCCCHHHHHHHHHHccCCChhhccEEEEeCCc----EEEEECHHHHHHHHHHhcc
Confidence 378899998 899999999999999999999999999999998 7999999999999987654
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.25 E-value=1e-05 Score=88.18 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=33.6
Q ss_pred eEEecCCCCChhHHHHHhcccccCCCCceEEEeeChhh
Q 012794 121 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 158 (456)
Q Consensus 121 ~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e 158 (456)
|||-...+.|...-.|-.||+||.|.+|.+..|++-.+
T Consensus 662 hVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeD 699 (997)
T 2ipc_A 662 FIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDD 699 (997)
T ss_dssp CEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSS
T ss_pred EEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECCh
Confidence 79999999999999999999999999999887766443
No 75
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.05 E-value=5.6e-06 Score=87.36 Aligned_cols=101 Identities=16% Similarity=0.243 Sum_probs=63.8
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHhcccCCCeEEEE--eccccccccCcCc----cceEE
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV--ATDVAARGLDIPN----VDLII 123 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLV--aTdv~~~Gidip~----v~~VI 123 (456)
..+.+|||+++...++++++.|.. + ...+++.. ..|+++++.|+++. .||+ +|+.+.+|||+|+ +.+||
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~-~-~~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vi 457 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG-I-PVIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLV 457 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT-S-CEEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc-C-ceEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEE
Confidence 457899999999999999988764 2 24556654 46889999999864 4665 8999999999997 89999
Q ss_pred ecCCCCCh------------------------------hHHHHHhcccccCCCCceEEEeeC
Q 012794 124 HYELPNDP------------------------------ETFVHRSGRTGRAGKEGTAILMFT 155 (456)
Q Consensus 124 ~~~~p~~~------------------------------~~y~qr~GR~gR~g~~g~~i~~~~ 155 (456)
++++|... ..+.|.+||+-|....--+++++.
T Consensus 458 i~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD 519 (540)
T 2vl7_A 458 LAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCD 519 (540)
T ss_dssp EESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEES
T ss_pred EECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEc
Confidence 99998521 224689999988643322344444
No 76
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=97.98 E-value=1.7e-06 Score=53.42 Aligned_cols=17 Identities=53% Similarity=1.300 Sum_probs=15.7
Q ss_pred CcccCCCCCcCcCCCCC
Q 012794 440 ACFNCGKSGHRASECPN 456 (456)
Q Consensus 440 ~~~~c~~~gh~~~~~p~ 456 (456)
.||||+++||+++|||.
T Consensus 8 ~C~nCgk~GH~ar~C~~ 24 (29)
T 1nc8_A 8 RCWNCGKEGHSARQCRA 24 (29)
T ss_dssp BCTTTSCBSSCGGGCCS
T ss_pred EEEECCccccCHhHCcc
Confidence 49999999999999984
No 77
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=97.92 E-value=3.1e-06 Score=56.11 Aligned_cols=17 Identities=41% Similarity=1.085 Sum_probs=15.9
Q ss_pred CcccCCCCCcCcCCCCC
Q 012794 440 ACFNCGKSGHRASECPN 456 (456)
Q Consensus 440 ~~~~c~~~gh~~~~~p~ 456 (456)
.||+|++.||+|+|||+
T Consensus 12 ~C~~Cgk~GH~ardCP~ 28 (40)
T 1a6b_B 12 QCAYCKEKGHWAKDCPK 28 (40)
T ss_dssp SCSSSCCTTCCTTSCSS
T ss_pred eeeECCCCCcchhhCcC
Confidence 49999999999999995
No 78
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=97.80 E-value=2.1e-05 Score=52.09 Aligned_cols=17 Identities=47% Similarity=1.331 Sum_probs=16.0
Q ss_pred CcccCCCCCcCcCCCCC
Q 012794 440 ACFNCGKSGHRASECPN 456 (456)
Q Consensus 440 ~~~~c~~~gh~~~~~p~ 456 (456)
.||+|+++||+++|||+
T Consensus 23 ~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 23 GCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp SCTTTCCSSSCTTTSCC
T ss_pred ccccCCCCCCccCcCcC
Confidence 49999999999999996
No 79
>3i31_A Heat resistant RNA dependent ATPase; RNA helicase, RNA recognition motif, ATP-binding, helicase, nucleotide-binding; 1.80A {Thermus thermophilus}
Probab=97.79 E-value=4.5e-05 Score=57.99 Aligned_cols=78 Identities=24% Similarity=0.326 Sum_probs=62.0
Q ss_pred CCccccCCCCceEEEEEeecCccccCCCChhHHHHHHHhhCCCCCCccccEEEeecCccceeeeecCHHHHHHHHhhcCC
Q 012794 238 SSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 317 (456)
Q Consensus 238 ~~r~l~~~~~g~~t~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ig~i~~~~~~~~~~~~~dv~~~~a~~~~~~~~~ 317 (456)
.++||+++++||+|+.++.. .++...++.+|..... +||+|..-.. |+++||+.++.. ..
T Consensus 2 ~~~SLLTGEEGw~Tlkl~G~------rLS~~R~VAlLk~aG~----~iGkI~~~~~----gayaDlr~e~l~------~~ 61 (88)
T 3i31_A 2 AERSLLTGEEGWRTYKATGP------RLSLPRLVALLKGQGL----EVGKVAEAEG----GFYVDLRPEARP------EV 61 (88)
T ss_dssp CCBCTTTCCBSCEEEEEECT------TCCHHHHHHHHHHTTC----CEEEEEEETT----EEEEEECTTCCC------CC
T ss_pred CcccccccCcceEEEEEecc------cccHHHHHHHHHHccc----ccccEEeccc----eeEEecChHHcc------cc
Confidence 46899999999999999754 3899999999987544 9999997655 689999988766 22
Q ss_pred CCCceeecccCCCccCCC
Q 012794 318 PGNTISKITKLPALQDDG 335 (456)
Q Consensus 318 ~g~~l~~~t~LP~l~~~~ 335 (456)
.++.+.+.+.+|.+.+.+
T Consensus 62 ~~~~~e~A~~v~~~~E~p 79 (88)
T 3i31_A 62 AGLRLEPARRVEGLLEIP 79 (88)
T ss_dssp TTCEEEECCSCCCCC---
T ss_pred ccceehhhhhccccccCC
Confidence 788899999998887654
No 80
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=97.61 E-value=1.5e-05 Score=56.90 Aligned_cols=17 Identities=41% Similarity=1.085 Sum_probs=15.9
Q ss_pred CcccCCCCCcCcCCCCC
Q 012794 440 ACFNCGKSGHRASECPN 456 (456)
Q Consensus 440 ~~~~c~~~gh~~~~~p~ 456 (456)
.||+||+.||+++|||+
T Consensus 25 ~C~~Cge~GH~ardCp~ 41 (56)
T 1u6p_A 25 QCAYCKEKGHWAKDCPK 41 (56)
T ss_dssp BCSSSCCBSSCGGGCTT
T ss_pred cceeCCCCCcccccCcC
Confidence 49999999999999995
No 81
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=97.53 E-value=7.2e-05 Score=52.13 Aligned_cols=16 Identities=50% Similarity=1.475 Sum_probs=15.4
Q ss_pred cccCCCCCcCcCCCCC
Q 012794 441 CFNCGKSGHRASECPN 456 (456)
Q Consensus 441 ~~~c~~~gh~~~~~p~ 456 (456)
||+|+++||+++|||+
T Consensus 30 C~~Cg~~GH~~~~C~~ 45 (49)
T 2ec7_A 30 CWKCGKTGHVMAKCPE 45 (49)
T ss_dssp CSSSCCSSCCGGGCCS
T ss_pred eCcCCCcCCccCCCcC
Confidence 9999999999999995
No 82
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=97.45 E-value=4e-05 Score=50.09 Aligned_cols=17 Identities=35% Similarity=1.087 Sum_probs=16.0
Q ss_pred CcccCCCCCcCcCCCCC
Q 012794 440 ACFNCGKSGHRASECPN 456 (456)
Q Consensus 440 ~~~~c~~~gh~~~~~p~ 456 (456)
.||+|+++||+++|||+
T Consensus 21 ~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 21 VCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TCSSCCCTTGGGGTTCC
T ss_pred eEccCCCcCCccCcCcC
Confidence 49999999999999997
No 83
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.44 E-value=5.1e-05 Score=53.94 Aligned_cols=18 Identities=50% Similarity=1.252 Sum_probs=16.1
Q ss_pred CCcccCCCCCcCcCCCCC
Q 012794 439 GACFNCGKSGHRASECPN 456 (456)
Q Consensus 439 ~~~~~c~~~gh~~~~~p~ 456 (456)
..||+||++||+++|||+
T Consensus 8 ~~C~kCGk~GH~~k~Cp~ 25 (55)
T 2ysa_A 8 YTCFRCGKPGHYIKNCPT 25 (55)
T ss_dssp CCCTTTCCTTSCGGGCSG
T ss_pred CccccCCCcCcccccCCC
Confidence 349999999999999993
No 84
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.42 E-value=0.0012 Score=64.52 Aligned_cols=120 Identities=13% Similarity=0.127 Sum_probs=84.6
Q ss_pred CcccHHHHHHHHHHHHC-CCCcEEEEcCChHHHHHHHHHHH-hcCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecccc
Q 012794 33 TATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 110 (456)
Q Consensus 33 ~~~~k~~~L~~ll~~~~-~~~~~IIF~~t~~~a~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~ 110 (456)
..+.|+.+|.+||.... .+.++|||++...+.+-|...|. +++...-+-|.....++ +. .+....|.+.|...
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k~----~~~~~~i~Lltsag 180 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-AA----NDFSCTVHLFSSEG 180 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSC
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-hc----ccCCceEEEEECCC
Confidence 35689999999998773 45699999999999999999888 47777888887544322 21 23455665556666
Q ss_pred ccccC-----cCccceEEecCCCCChhHH-HHHhcccccCC----CCceEEEeeChh
Q 012794 111 ARGLD-----IPNVDLIIHYELPNDPETF-VHRSGRTGRAG----KEGTAILMFTSS 157 (456)
Q Consensus 111 ~~Gid-----ip~v~~VI~~~~p~~~~~y-~qr~GR~gR~g----~~g~~i~~~~~~ 157 (456)
.-|+| +...+.||.||.-+++..= +|++-|+.|.+ +.-.+|-+++..
T Consensus 181 ~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~ 237 (328)
T 3hgt_A 181 INFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAIN 237 (328)
T ss_dssp CCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETT
T ss_pred CCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCC
Confidence 66676 6788999999999999885 89888888863 344566666554
No 85
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=97.41 E-value=9.5e-05 Score=54.07 Aligned_cols=17 Identities=35% Similarity=0.847 Sum_probs=15.9
Q ss_pred CcccCCCCCcCcCCCCC
Q 012794 440 ACFNCGKSGHRASECPN 456 (456)
Q Consensus 440 ~~~~c~~~gh~~~~~p~ 456 (456)
.||+|+++||+++|||+
T Consensus 32 ~C~~Cg~~GH~ar~C~~ 48 (61)
T 2ihx_A 32 RCQLCNGMGHNAKQCRK 48 (61)
T ss_dssp BCTTTCCBSSCGGGCCC
T ss_pred eeCCCCCCCCCcCCCcC
Confidence 49999999999999995
No 86
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.41 E-value=0.00022 Score=52.39 Aligned_cols=16 Identities=31% Similarity=0.818 Sum_probs=15.4
Q ss_pred cccCCCCCcCcCCCCC
Q 012794 441 CFNCGKSGHRASECPN 456 (456)
Q Consensus 441 ~~~c~~~gh~~~~~p~ 456 (456)
||+|+++||+++|||+
T Consensus 32 C~~Cg~~GH~ar~Cp~ 47 (63)
T 2cqf_A 32 CHFCQSISHMVASCPL 47 (63)
T ss_dssp CTTTCCSSSCTTTCTG
T ss_pred cCCcCCcCCccCcCCC
Confidence 9999999999999995
No 87
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=97.38 E-value=0.00015 Score=62.97 Aligned_cols=16 Identities=31% Similarity=0.818 Sum_probs=15.6
Q ss_pred cccCCCCCcCcCCCCC
Q 012794 441 CFNCGKSGHRASECPN 456 (456)
Q Consensus 441 ~~~c~~~gh~~~~~p~ 456 (456)
||+|+++||+++|||+
T Consensus 122 C~~Cg~~GH~~r~Cp~ 137 (148)
T 3ts2_A 122 CHFCQSINHMVASCPL 137 (148)
T ss_dssp CTTTCCSSCCGGGCTT
T ss_pred ccccCCcCCEeccCcC
Confidence 9999999999999996
No 88
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=97.38 E-value=0.00021 Score=54.26 Aligned_cols=17 Identities=29% Similarity=0.763 Sum_probs=15.8
Q ss_pred CcccCCCCCcCcCCCCC
Q 012794 440 ACFNCGKSGHRASECPN 456 (456)
Q Consensus 440 ~~~~c~~~gh~~~~~p~ 456 (456)
.||+|+++||+++|||+
T Consensus 48 ~C~~Cg~~GH~ar~Cp~ 64 (74)
T 2li8_A 48 KCHFCQSISHMVASCPL 64 (74)
T ss_dssp CCTTTCCTTSCGGGCTT
T ss_pred ccCCcCCcCCccCcCcC
Confidence 39999999999999995
No 89
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=97.34 E-value=6.6e-05 Score=49.64 Aligned_cols=17 Identities=59% Similarity=1.341 Sum_probs=15.7
Q ss_pred CcccCCCCCcCcCCCCC
Q 012794 440 ACFNCGKSGHRASECPN 456 (456)
Q Consensus 440 ~~~~c~~~gh~~~~~p~ 456 (456)
.||+|+++||+++|||+
T Consensus 2 ~C~~Cg~~GH~a~~C~~ 18 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQ 18 (39)
T ss_dssp BCTTTCCBSSCTTTCCS
T ss_pred eeeccCCCCcccccCCC
Confidence 39999999999999994
No 90
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=97.27 E-value=9.6e-05 Score=48.24 Aligned_cols=17 Identities=53% Similarity=1.339 Sum_probs=15.7
Q ss_pred CcccCCCCCcCcCCCCC
Q 012794 440 ACFNCGKSGHRASECPN 456 (456)
Q Consensus 440 ~~~~c~~~gh~~~~~p~ 456 (456)
.||+|+++||+++|||+
T Consensus 2 ~C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA 18 (37)
T ss_dssp CBSSSCCSSCCTTTSSC
T ss_pred cccccCCCCcchhhCcC
Confidence 39999999999999995
No 91
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=97.19 E-value=0.00027 Score=53.65 Aligned_cols=18 Identities=44% Similarity=1.027 Sum_probs=16.1
Q ss_pred CCcccCCCCCcCcCCCCC
Q 012794 439 GACFNCGKSGHRASECPN 456 (456)
Q Consensus 439 ~~~~~c~~~gh~~~~~p~ 456 (456)
..||+|+++||+++|||+
T Consensus 25 ~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 25 DRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp SCCTTTCCSSSCTTTCSS
T ss_pred CcccccCCcCcCcccCCC
Confidence 349999999999999983
No 92
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=97.17 E-value=0.00016 Score=52.67 Aligned_cols=18 Identities=39% Similarity=0.905 Sum_probs=16.3
Q ss_pred CCcccCCCCCcCcCCCCC
Q 012794 439 GACFNCGKSGHRASECPN 456 (456)
Q Consensus 439 ~~~~~c~~~gh~~~~~p~ 456 (456)
..||+|+++||+++|||+
T Consensus 31 ~~C~~Cg~~GH~ar~C~~ 48 (60)
T 1cl4_A 31 GLCPRCKRGKHWANECKS 48 (60)
T ss_dssp CSCSSCSSCSSCSTTCCC
T ss_pred cceeECCCCCCccCcCCC
Confidence 349999999999999995
No 93
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=97.10 E-value=0.00017 Score=50.27 Aligned_cols=17 Identities=53% Similarity=1.300 Sum_probs=15.8
Q ss_pred CcccCCCCCcCcCCCCC
Q 012794 440 ACFNCGKSGHRASECPN 456 (456)
Q Consensus 440 ~~~~c~~~gh~~~~~p~ 456 (456)
.||+|+++||+++|||+
T Consensus 8 ~C~~Cg~~GH~a~~C~~ 24 (49)
T 2ec7_A 8 RCWNCGKEGHSARQCRA 24 (49)
T ss_dssp BCTTTCCBTCCTTTCCC
T ss_pred eeeecCCCCcChhhCcC
Confidence 49999999999999984
No 94
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.05 E-value=0.00033 Score=51.46 Aligned_cols=18 Identities=44% Similarity=1.027 Sum_probs=16.1
Q ss_pred CCcccCCCCCcCcCCCCC
Q 012794 439 GACFNCGKSGHRASECPN 456 (456)
Q Consensus 439 ~~~~~c~~~gh~~~~~p~ 456 (456)
..||+|+++||+++|||+
T Consensus 8 ~~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKL 25 (63)
T ss_dssp CCCSSSCCSSSCTTTCCS
T ss_pred CcccccCCCCcChhhCCC
Confidence 349999999999999994
No 95
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.00017 Score=56.02 Aligned_cols=18 Identities=39% Similarity=1.030 Sum_probs=16.4
Q ss_pred CCcccCCCCCcCcCCCCC
Q 012794 439 GACFNCGKSGHRASECPN 456 (456)
Q Consensus 439 ~~~~~c~~~gh~~~~~p~ 456 (456)
..||+||+.||+++|||+
T Consensus 47 ~~CYnCG~~GH~~rdC~~ 64 (83)
T 3nyb_B 47 IYCYNCGGKGHFGDDCKE 64 (83)
T ss_dssp CBCSSSSCBSSCGGGCSS
T ss_pred CeecccCCCCcCcccCCc
Confidence 459999999999999995
No 96
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=96.99 E-value=0.00022 Score=50.90 Aligned_cols=17 Identities=41% Similarity=1.304 Sum_probs=15.8
Q ss_pred CcccCCCCCcCcCCCCC
Q 012794 440 ACFNCGKSGHRASECPN 456 (456)
Q Consensus 440 ~~~~c~~~gh~~~~~p~ 456 (456)
.||+|+++||+++|||+
T Consensus 35 ~C~~Cg~~GH~~~~C~~ 51 (55)
T 1a1t_A 35 GCWKCGKEGHQMKDCTE 51 (55)
T ss_dssp BCTTTCCBSSCGGGCSS
T ss_pred EeCCCCCcCCccCCCcC
Confidence 39999999999999995
No 97
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=96.97 E-value=0.0002 Score=52.26 Aligned_cols=17 Identities=41% Similarity=1.327 Sum_probs=15.9
Q ss_pred CcccCCCCCcCcCCCCC
Q 012794 440 ACFNCGKSGHRASECPN 456 (456)
Q Consensus 440 ~~~~c~~~gh~~~~~p~ 456 (456)
.||+|+++||+++|||+
T Consensus 6 ~C~~Cg~~GH~a~~C~~ 22 (61)
T 2ihx_A 6 LCYTCGSPGHYQAQCPK 22 (61)
T ss_dssp BCSSSCCBTCCGGGCTT
T ss_pred cccccCCCCeehhhCcC
Confidence 49999999999999995
No 98
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.002 Score=54.02 Aligned_cols=19 Identities=37% Similarity=0.957 Sum_probs=17.2
Q ss_pred CCCcccCCCCCcCcCCCCC
Q 012794 438 GGACFNCGKSGHRASECPN 456 (456)
Q Consensus 438 ~~~~~~c~~~gh~~~~~p~ 456 (456)
...||+|++.||+|+|||+
T Consensus 105 ~~~Cy~Cg~~GH~a~dCp~ 123 (124)
T 2lli_A 105 TIYCYNCGGKGHFGDDCKE 123 (124)
T ss_dssp CCCTTTTSSSCTTTTTSCC
T ss_pred CCCcCCCCCCCcCcccCcC
Confidence 3569999999999999996
No 99
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=96.75 E-value=0.00039 Score=49.58 Aligned_cols=17 Identities=59% Similarity=1.318 Sum_probs=15.7
Q ss_pred CcccCCCCCcCcCCCCC
Q 012794 440 ACFNCGKSGHRASECPN 456 (456)
Q Consensus 440 ~~~~c~~~gh~~~~~p~ 456 (456)
.||+|+++||+++|||+
T Consensus 14 ~C~~Cg~~GH~a~~C~~ 30 (55)
T 1a1t_A 14 KCFNCGKEGHIAKNCRA 30 (55)
T ss_dssp BCTTTCCBSSCGGGCSS
T ss_pred ceeeeCCCCcChhhcCC
Confidence 49999999999999984
No 100
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=96.69 E-value=0.0063 Score=65.05 Aligned_cols=103 Identities=20% Similarity=0.268 Sum_probs=68.1
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc--ccccccCcCc--cceEEecC
Q 012794 51 GGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD--VAARGLDIPN--VDLIIHYE 126 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd--v~~~Gidip~--v~~VI~~~ 126 (456)
++.+|||+++....+++++.|. .+... ..-+++...+..+++.|+ +.-.||++|. ...+|||+|+ +.+||...
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~-~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~ 524 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVS-FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAG 524 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCC-SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESS
T ss_pred CCCEEEEeCCHHHHHHHHHHHH-hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEc
Confidence 5789999999999999988776 22222 444555678999999999 7778999975 9999999984 56799888
Q ss_pred CCCCh-----------------------------hHHHHHhcccccCCCCceEEEeeCh
Q 012794 127 LPNDP-----------------------------ETFVHRSGRTGRAGKEGTAILMFTS 156 (456)
Q Consensus 127 ~p~~~-----------------------------~~y~qr~GR~gR~g~~g~~i~~~~~ 156 (456)
+|... ....|.+||+=|.-..--+++++..
T Consensus 525 lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 525 LPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 77421 1126899999886544334444443
No 101
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=96.06 E-value=0.016 Score=58.14 Aligned_cols=88 Identities=15% Similarity=0.210 Sum_probs=68.6
Q ss_pred ccHHH-HHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccc
Q 012794 35 TSKRT-ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 109 (456)
Q Consensus 35 ~~k~~-~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv 109 (456)
.-|.. .+..++.....+.++||.+||++.+.++++.+.. .+.+..+||+++..++...++.+..+..+|+|+|+-
T Consensus 47 sGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~ 126 (414)
T 3oiy_A 47 VGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQ 126 (414)
T ss_dssp SSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHH
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHH
Confidence 45654 3333344445678999999999999999999986 568999999999999888888888888999999962
Q ss_pred -----cccccCcCccceEE
Q 012794 110 -----AARGLDIPNVDLII 123 (456)
Q Consensus 110 -----~~~Gidip~v~~VI 123 (456)
+.. +++..+.+||
T Consensus 127 ~l~~~l~~-~~~~~~~~iV 144 (414)
T 3oiy_A 127 FVSKNREK-LSQKRFDFVF 144 (414)
T ss_dssp HHHHCHHH-HTTCCCSEEE
T ss_pred HHHHHHHH-hccccccEEE
Confidence 222 5666788877
No 102
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.05 E-value=0.014 Score=64.04 Aligned_cols=90 Identities=20% Similarity=0.286 Sum_probs=70.9
Q ss_pred ccHHHH-HHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc
Q 012794 35 TSKRTI-LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 35 ~~k~~~-L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
.-|..+ +..++.....+.++||.++|+..|.++++.+.+ ++.+..+||+++..++..+++.+.++..+|+|+|.
T Consensus 400 SGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~ 479 (780)
T 1gm5_A 400 SGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTH 479 (780)
T ss_dssp SSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECT
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 456433 333444444467999999999999999988864 37899999999999999999999999999999997
Q ss_pred c-cccccCcCccceEEe
Q 012794 109 V-AARGLDIPNVDLIIH 124 (456)
Q Consensus 109 v-~~~Gidip~v~~VI~ 124 (456)
. +...+++.++.+||.
T Consensus 480 ~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 480 ALIQEDVHFKNLGLVII 496 (780)
T ss_dssp THHHHCCCCSCCCEEEE
T ss_pred HHHhhhhhccCCceEEe
Confidence 4 334578888888883
No 103
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=96.03 E-value=0.002 Score=55.74 Aligned_cols=17 Identities=47% Similarity=1.085 Sum_probs=15.7
Q ss_pred CcccCCCCCcCcCCCCC
Q 012794 440 ACFNCGKSGHRASECPN 456 (456)
Q Consensus 440 ~~~~c~~~gh~~~~~p~ 456 (456)
.||||++.||+|++||+
T Consensus 99 ~C~~Cg~~GH~a~~C~~ 115 (148)
T 3ts2_A 99 RCYNCGGLDHHAKECKL 115 (148)
T ss_dssp CCTTTCCSSCCGGGCCS
T ss_pred cccEeCCccchhhhCCC
Confidence 39999999999999984
No 104
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=95.63 E-value=0.019 Score=47.94 Aligned_cols=18 Identities=28% Similarity=0.709 Sum_probs=16.3
Q ss_pred CCcccCCCCCcCcCCCCC
Q 012794 439 GACFNCGKSGHRASECPN 456 (456)
Q Consensus 439 ~~~~~c~~~gh~~~~~p~ 456 (456)
..||+|++.||+++|||+
T Consensus 65 ~~C~~Cg~~GH~~~~Cp~ 82 (124)
T 2lli_A 65 VQCTLCKSKKHSKERCPS 82 (124)
T ss_dssp CSSSSSCSSCCCTTTCCC
T ss_pred ccCCCCCcCCcchhhCCC
Confidence 459999999999999995
No 105
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.44 E-value=0.094 Score=48.40 Aligned_cols=69 Identities=16% Similarity=0.236 Sum_probs=54.2
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----cccc-ccCcCcc
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPNV 119 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~~~-Gidip~v 119 (456)
..++||.|+|++.+.++++.+.. .+.+..++|+.+...+...+.. ..+|+|+|+ .+.. .+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 46799999999999999887764 4688999999998877766654 578999995 3333 3678888
Q ss_pred ceEE
Q 012794 120 DLII 123 (456)
Q Consensus 120 ~~VI 123 (456)
.+||
T Consensus 178 ~~lV 181 (242)
T 3fe2_A 178 TYLV 181 (242)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 8877
No 106
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=95.08 E-value=0.041 Score=62.62 Aligned_cols=90 Identities=14% Similarity=0.194 Sum_probs=70.0
Q ss_pred cccHHHHH-HHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc
Q 012794 34 ATSKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 34 ~~~k~~~L-~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
..-|..+. ..++.....+.++||.+||++.|.++++.|.. .+.+..+||+++..++...++.+.++..+|||+|+
T Consensus 103 GSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp 182 (1104)
T 4ddu_A 103 GVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFST 182 (1104)
T ss_dssp TCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEH
T ss_pred CCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECH
Confidence 34575433 33344445678999999999999999999986 35899999999998888889999999899999995
Q ss_pred c-----cccccCcCccceEEe
Q 012794 109 V-----AARGLDIPNVDLIIH 124 (456)
Q Consensus 109 v-----~~~Gidip~v~~VI~ 124 (456)
- +.. +++.++.+||.
T Consensus 183 ~rL~~~l~~-l~~~~l~~lVi 202 (1104)
T 4ddu_A 183 QFVSKNREK-LSQKRFDFVFV 202 (1104)
T ss_dssp HHHHHSHHH-HHTSCCSEEEE
T ss_pred HHHHHHHHh-hcccCcCEEEE
Confidence 2 222 56678888773
No 107
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=94.50 E-value=0.27 Score=51.41 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=52.2
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEec--cccccccCcC-----ccceE
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVAT--DVAARGLDIP-----NVDLI 122 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaT--dv~~~Gidip-----~v~~V 122 (456)
..+.+|||+++....+++++.+ ...+.+-.-+++. ..+++.|+...-.||+|| ....+|||+| .+..|
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~~--~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~v 466 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSRI--SLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDV 466 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTTC--CSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEE
T ss_pred CCCCEEEEecCHHHHHHHHHhc--CCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEE
Confidence 3578999999999999988732 2223222234554 456677753334799998 6999999999 36788
Q ss_pred EecCCCC
Q 012794 123 IHYELPN 129 (456)
Q Consensus 123 I~~~~p~ 129 (456)
|...+|.
T Consensus 467 iI~~lPf 473 (551)
T 3crv_A 467 VIVGIPY 473 (551)
T ss_dssp EEESCCC
T ss_pred EEEcCCC
Confidence 8777664
No 108
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.27 E-value=0.24 Score=45.00 Aligned_cols=70 Identities=14% Similarity=0.262 Sum_probs=48.0
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHh----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----cc-ccccCcCcc
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VA-ARGLDIPNV 119 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~-~~Gidip~v 119 (456)
...++||.++|++.+.++++.+.+ .+.+..++|+.+...+...+.. ..+|+|+|+ .+ ...+++..+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISK----GVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHS----CCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCcCcccc
Confidence 456899999999999999998875 3678889998876655544433 578999995 22 234677888
Q ss_pred ceEE
Q 012794 120 DLII 123 (456)
Q Consensus 120 ~~VI 123 (456)
.+||
T Consensus 169 ~~lV 172 (228)
T 3iuy_A 169 TYLV 172 (228)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 8777
No 109
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=94.19 E-value=0.39 Score=44.52 Aligned_cols=70 Identities=19% Similarity=0.261 Sum_probs=52.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----ccc--cccCcCc
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAA--RGLDIPN 118 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~~--~Gidip~ 118 (456)
..++||.++|++.+.++++.+.+ .+.+..++|+.+...+...+.. ..+|+|+|+ .+. ..+++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK----KPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHT----CCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCcCccc
Confidence 45799999999999999987763 3678899999887766555543 678999995 222 3467788
Q ss_pred cceEEe
Q 012794 119 VDLIIH 124 (456)
Q Consensus 119 v~~VI~ 124 (456)
+++||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 887773
No 110
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=94.10 E-value=0.36 Score=44.60 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=50.3
Q ss_pred CcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----cccc-ccCcCccc
Q 012794 52 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPNVD 120 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~~~-Gidip~v~ 120 (456)
.++||.|+|++.+.++++.+.. .+.+..++|+.+...+...+. ...+|+|+|+ .+.. .+++..+.
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQ----MGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHS----SCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhC----CCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 4899999999999999888764 256788899887665554443 2578999995 2222 36777888
Q ss_pred eEE
Q 012794 121 LII 123 (456)
Q Consensus 121 ~VI 123 (456)
+||
T Consensus 177 ~lV 179 (253)
T 1wrb_A 177 YIV 179 (253)
T ss_dssp EEE
T ss_pred EEE
Confidence 777
No 111
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=94.03 E-value=0.14 Score=58.43 Aligned_cols=89 Identities=15% Similarity=0.178 Sum_probs=70.2
Q ss_pred ccHHHHHH-HHHHHHCCCCcEEEEcCChHHHHHHHHHHHhc-----CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc
Q 012794 35 TSKRTILS-DLITVYAKGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 35 ~~k~~~L~-~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~-----~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
.-|..+.. .++.....+.++||.|+|+..|.+.++.+.+. +.+..+++..+..++..+++.+.++.++|+|+|.
T Consensus 635 sGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~ 714 (1151)
T 2eyq_A 635 FGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 714 (1151)
T ss_dssp TTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECT
T ss_pred CCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 45654332 23333445679999999999999999988742 5688899999999999999999999999999995
Q ss_pred -ccccccCcCccceEE
Q 012794 109 -VAARGLDIPNVDLII 123 (456)
Q Consensus 109 -v~~~Gidip~v~~VI 123 (456)
.+...+.+.++.+||
T Consensus 715 ~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 715 KLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp HHHHSCCCCSSEEEEE
T ss_pred HHHhCCccccccceEE
Confidence 445558888888877
No 112
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=93.33 E-value=0.65 Score=41.08 Aligned_cols=86 Identities=22% Similarity=0.234 Sum_probs=59.7
Q ss_pred cccHHHH-HHHHHHHHC------CCCcEEEEcCChHHHHHHHHHHHh---cCCEEEEeCCCCHHHHHHHHhcccCCCeEE
Q 012794 34 ATSKRTI-LSDLITVYA------KGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTV 103 (456)
Q Consensus 34 ~~~k~~~-L~~ll~~~~------~~~~~IIF~~t~~~a~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~v 103 (456)
..-|..+ +..++.... ...++||.|+|++.+.++++.+.+ .+.+..++|+.+...+...+.. ..+|
T Consensus 48 GsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i 123 (207)
T 2gxq_A 48 GTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLR----GADA 123 (207)
T ss_dssp TSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHH----CCSE
T ss_pred CChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhC----CCCE
Confidence 3567654 444444432 346899999999999999999885 3678889998876655544433 5789
Q ss_pred EEecc-----cccc-ccCcCccceEE
Q 012794 104 LVATD-----VAAR-GLDIPNVDLII 123 (456)
Q Consensus 104 LVaTd-----v~~~-Gidip~v~~VI 123 (456)
+|+|+ .+.. .+++..+++||
T Consensus 124 ~v~T~~~l~~~~~~~~~~~~~~~~iV 149 (207)
T 2gxq_A 124 VVATPGRALDYLRQGVLDLSRVEVAV 149 (207)
T ss_dssp EEECHHHHHHHHHHTSSCCTTCSEEE
T ss_pred EEECHHHHHHHHHcCCcchhhceEEE
Confidence 99995 2222 36677888777
No 113
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=92.86 E-value=0.66 Score=42.43 Aligned_cols=86 Identities=14% Similarity=0.214 Sum_probs=51.0
Q ss_pred ccHHHH-HHHHHHHHC---CCCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEE
Q 012794 35 TSKRTI-LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 105 (456)
Q Consensus 35 ~~k~~~-L~~ll~~~~---~~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLV 105 (456)
.-|..+ +..++.... ...++||.++|++.+.++++.+.. .+.+..++|+...... ++.+..+..+|+|
T Consensus 78 sGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~Ilv 154 (237)
T 3bor_A 78 TGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAEAPHIVV 154 (237)
T ss_dssp HHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEE
T ss_pred CcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcCCCCEEE
Confidence 456543 334444332 346899999999999999998874 2567778887654332 3344556688999
Q ss_pred ecc-----ccccc-cCcCccceEE
Q 012794 106 ATD-----VAARG-LDIPNVDLII 123 (456)
Q Consensus 106 aTd-----v~~~G-idip~v~~VI 123 (456)
+|+ .+.++ +++..+.+||
T Consensus 155 ~Tp~~l~~~l~~~~~~~~~~~~lV 178 (237)
T 3bor_A 155 GTPGRVFDMLNRRYLSPKWIKMFV 178 (237)
T ss_dssp ECHHHHHHHHHTTSSCSTTCCEEE
T ss_pred ECHHHHHHHHHhCCcCcccCcEEE
Confidence 994 33333 6677788777
No 114
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=92.86 E-value=0.61 Score=41.98 Aligned_cols=85 Identities=18% Similarity=0.189 Sum_probs=51.8
Q ss_pred cccHHHH-HHHHHHHH---CCCCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEE
Q 012794 34 ATSKRTI-LSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVL 104 (456)
Q Consensus 34 ~~~k~~~-L~~ll~~~---~~~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vL 104 (456)
..-|..+ +..++... ....++||.++|++.+.++++.+.. .+.+..++|+.+..++...+ . ..+|+
T Consensus 61 GsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--~~~ii 135 (224)
T 1qde_A 61 GTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL---R--DAQIV 135 (224)
T ss_dssp TSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C---T--TCSEE
T ss_pred CCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC---C--CCCEE
Confidence 3567654 44445443 2345899999999999999988764 35788889987665544333 2 27899
Q ss_pred Eeccc------cccccCcCccceEE
Q 012794 105 VATDV------AARGLDIPNVDLII 123 (456)
Q Consensus 105 VaTdv------~~~Gidip~v~~VI 123 (456)
|+|.- ....+++..+.+||
T Consensus 136 v~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 136 VGTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp EECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred EECHHHHHHHHHhCCcchhhCcEEE
Confidence 99952 12346677788777
No 115
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=92.66 E-value=0.68 Score=41.58 Aligned_cols=87 Identities=16% Similarity=0.228 Sum_probs=57.4
Q ss_pred cccHHHH-HHHHHHHHCC---CCcEEEEcCChHHHHHHHHHHHh------cCCEEEEeCCCCHHHHHHHHhcccCCCeEE
Q 012794 34 ATSKRTI-LSDLITVYAK---GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTV 103 (456)
Q Consensus 34 ~~~k~~~-L~~ll~~~~~---~~~~IIF~~t~~~a~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~v 103 (456)
..-|..+ +..++..... ..++||.|+|++.+.++++.+.+ .+.+..++|+.+...+...+. ++..+|
T Consensus 61 GsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~~~~~i 137 (220)
T 1t6n_A 61 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK---KNCPHI 137 (220)
T ss_dssp TSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHH---HSCCSE
T ss_pred CCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHh---cCCCCE
Confidence 3457543 3333333322 34899999999999999888764 367889999998776655543 345689
Q ss_pred EEeccc-----cc-cccCcCccceEE
Q 012794 104 LVATDV-----AA-RGLDIPNVDLII 123 (456)
Q Consensus 104 LVaTdv-----~~-~Gidip~v~~VI 123 (456)
+|+|.- +. ..+++..+++||
T Consensus 138 ~v~T~~~l~~~~~~~~~~~~~~~~lV 163 (220)
T 1t6n_A 138 VVGTPGRILALARNKSLNLKHIKHFI 163 (220)
T ss_dssp EEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred EEeCHHHHHHHHHhCCCCcccCCEEE
Confidence 999952 11 235566666666
No 116
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=92.61 E-value=0.7 Score=47.96 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=60.0
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccc------cccCcCccceE
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA------RGLDIPNVDLI 122 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~------~Gidip~v~~V 122 (456)
..+.+||.++++..+.+....|.. ++.+..+|+..+..++..++..+..+..+|||+|+-.- .-++...+.+|
T Consensus 64 ~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~v 143 (523)
T 1oyw_A 64 LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLL 143 (523)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEE
T ss_pred hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEE
Confidence 357899999999999999999985 78899999999999999999999999999999995211 12334556665
Q ss_pred E
Q 012794 123 I 123 (456)
Q Consensus 123 I 123 (456)
|
T Consensus 144 V 144 (523)
T 1oyw_A 144 A 144 (523)
T ss_dssp E
T ss_pred E
Confidence 5
No 117
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=92.55 E-value=1.2 Score=41.53 Aligned_cols=69 Identities=16% Similarity=0.257 Sum_probs=51.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----cccc--ccCcCc
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR--GLDIPN 118 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~~~--Gidip~ 118 (456)
..++||.++|++.|.++++.+.+ .+.+..++|+.........+.. ..+|+|+|+ .+.. .+++..
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGN----GINIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcC----CCCEEEEcHHHHHHHHHccCCccccc
Confidence 56899999999999999998875 2467888999887766555443 478999994 2222 467778
Q ss_pred cceEE
Q 012794 119 VDLII 123 (456)
Q Consensus 119 v~~VI 123 (456)
+.+||
T Consensus 202 l~~lV 206 (262)
T 3ly5_A 202 LQCLV 206 (262)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 88777
No 118
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=92.36 E-value=0.73 Score=41.91 Aligned_cols=68 Identities=12% Similarity=0.220 Sum_probs=48.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccc-----ccc--ccCcCc
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR--GLDIPN 118 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv-----~~~--Gidip~ 118 (456)
..++||.|+|++.+.++++.+.. .+.+..++|+.+.......+ ...+|+|+|.- +.. .+++..
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 171 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATD 171 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCccccc
Confidence 56899999999999999988874 26788899987766554444 25789999952 222 356677
Q ss_pred cceEE
Q 012794 119 VDLII 123 (456)
Q Consensus 119 v~~VI 123 (456)
+.+||
T Consensus 172 ~~~lV 176 (236)
T 2pl3_A 172 LQMLV 176 (236)
T ss_dssp CCEEE
T ss_pred ccEEE
Confidence 77776
No 119
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=92.28 E-value=0.33 Score=49.03 Aligned_cols=69 Identities=12% Similarity=0.203 Sum_probs=53.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----ccccc-cCcCcc
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNV 119 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~~~G-idip~v 119 (456)
..++||.++|++.|.++++.+.+ .+.+..++|+.+...+...+.. ..+|+|+|+ .+.++ +++..+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~----~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITR----GCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTT----CCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhc----CCCEEEEChHHHHHHHHhCCcccccC
Confidence 35899999999999999988874 2568889999988776665543 678999995 33444 677888
Q ss_pred ceEE
Q 012794 120 DLII 123 (456)
Q Consensus 120 ~~VI 123 (456)
.+||
T Consensus 205 ~~lV 208 (434)
T 2db3_A 205 RFVV 208 (434)
T ss_dssp CEEE
T ss_pred CeEE
Confidence 8877
No 120
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=92.03 E-value=0.71 Score=41.96 Aligned_cols=85 Identities=15% Similarity=0.190 Sum_probs=58.1
Q ss_pred cccHHHH-HHHHHHHH---CCCCcEEEEcCChHHHHHHHHHHHh------cCCEEEEeCCCCHHHHHHHHhcccCCCeEE
Q 012794 34 ATSKRTI-LSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTV 103 (456)
Q Consensus 34 ~~~k~~~-L~~ll~~~---~~~~~~IIF~~t~~~a~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~v 103 (456)
..-|..+ +..++... ....++||.|+|++.+.++++.+.. .+.+..++|+.+..++...++ ..+|
T Consensus 71 GsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~I 145 (230)
T 2oxc_A 71 GTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-----KCHI 145 (230)
T ss_dssp TSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-----SCSE
T ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-----CCCE
Confidence 3567544 34444443 2346899999999999999988874 356888999998877665543 4789
Q ss_pred EEeccc-----cc-cccCcCccceEE
Q 012794 104 LVATDV-----AA-RGLDIPNVDLII 123 (456)
Q Consensus 104 LVaTdv-----~~-~Gidip~v~~VI 123 (456)
+|+|.- +. ..+++..+.+||
T Consensus 146 iv~Tp~~l~~~~~~~~~~~~~~~~lV 171 (230)
T 2oxc_A 146 AVGSPGRIKQLIELDYLNPGSIRLFI 171 (230)
T ss_dssp EEECHHHHHHHHHTTSSCGGGCCEEE
T ss_pred EEECHHHHHHHHhcCCcccccCCEEE
Confidence 999962 22 235566666655
No 121
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=91.37 E-value=0.46 Score=50.20 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=52.9
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcc--cCCCeEEEEecc
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGF--RQGKFTVLVATD 108 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~F--r~g~~~vLVaTd 108 (456)
..+.+||.+|+++.+.+.+..|.. ++.+..++++++..++..++..+ ..+..+|||+|+
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 457999999999999999999986 78999999999999999888888 567899999997
No 122
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=91.35 E-value=0.41 Score=54.17 Aligned_cols=87 Identities=16% Similarity=0.251 Sum_probs=62.3
Q ss_pred ccHHHHHHHHH-HHHCCCCcEEEEcCChHHHHHHHHHHHh-----cC----CEEEEeCCCCHHHHHHHHhcccCCCeEEE
Q 012794 35 TSKRTILSDLI-TVYAKGGKTIVFTQTKRDADEVSLALTS-----II----ASEALHGDISQHQRERTLNGFRQGKFTVL 104 (456)
Q Consensus 35 ~~k~~~L~~ll-~~~~~~~~~IIF~~t~~~a~~l~~~L~~-----~~----~~~~lhg~~~~~~R~~~l~~Fr~g~~~vL 104 (456)
.-|...+..++ .....+.++||.++|++.|.++++.+.. .+ .+..+||+++..++...++.+++ .+|+
T Consensus 82 SGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~Il 159 (1054)
T 1gku_B 82 VGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIV 159 (1054)
T ss_dssp SCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEE
T ss_pred CCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEE
Confidence 34543333333 3334567999999999999999998874 24 78899999999998888888887 8999
Q ss_pred Eeccc-cccccC-cCccceEE
Q 012794 105 VATDV-AARGLD-IPNVDLII 123 (456)
Q Consensus 105 VaTdv-~~~Gid-ip~v~~VI 123 (456)
|+|+- +..-+. +..+.+||
T Consensus 160 V~TP~~L~~~l~~L~~l~~lV 180 (1054)
T 1gku_B 160 ITTTQFLSKHYRELGHFDFIF 180 (1054)
T ss_dssp EEEHHHHHHCSTTSCCCSEEE
T ss_pred EEcHHHHHHHHHHhccCCEEE
Confidence 99961 111111 55777777
No 123
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=91.14 E-value=1.2 Score=39.41 Aligned_cols=86 Identities=21% Similarity=0.229 Sum_probs=56.4
Q ss_pred cccHHH-HHHHHHHHHC---CCCcEEEEcCChHHHHHHHHHHHh------cCCEEEEeCCCCHHHHHHHHhcccCCCeEE
Q 012794 34 ATSKRT-ILSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTV 103 (456)
Q Consensus 34 ~~~k~~-~L~~ll~~~~---~~~~~IIF~~t~~~a~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~v 103 (456)
..-|.. .+..++.... ...++||.|+|++.+.++++.+.. .+.+..++|+.+..+....+. ...+|
T Consensus 50 GsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i 125 (206)
T 1vec_A 50 GTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD----DTVHV 125 (206)
T ss_dssp SSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTT----SCCSE
T ss_pred CCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcC----CCCCE
Confidence 345653 3333444332 245799999999999999888863 356888999988766544432 36789
Q ss_pred EEecc-----ccccc-cCcCccceEE
Q 012794 104 LVATD-----VAARG-LDIPNVDLII 123 (456)
Q Consensus 104 LVaTd-----v~~~G-idip~v~~VI 123 (456)
+|+|+ .+..+ +++..+.+||
T Consensus 126 ~v~T~~~l~~~~~~~~~~~~~~~~lV 151 (206)
T 1vec_A 126 VIATPGRILDLIKKGVAKVDHVQMIV 151 (206)
T ss_dssp EEECHHHHHHHHHTTCSCCTTCCEEE
T ss_pred EEeCHHHHHHHHHcCCcCcccCCEEE
Confidence 99996 22222 4566677666
No 124
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=89.49 E-value=1.7 Score=42.31 Aligned_cols=87 Identities=16% Similarity=0.227 Sum_probs=59.8
Q ss_pred cccHHHH-HHHHHHHHC---CCCcEEEEcCChHHHHHHHHHHHh------cCCEEEEeCCCCHHHHHHHHhcccCCCeEE
Q 012794 34 ATSKRTI-LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTV 103 (456)
Q Consensus 34 ~~~k~~~-L~~ll~~~~---~~~~~IIF~~t~~~a~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~v 103 (456)
..-|..+ +..++.... ...++||.|+|+..++++++.+.+ .+.+..++|+.+.......+. ++..+|
T Consensus 55 GsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~i 131 (391)
T 1xti_A 55 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK---KNCPHI 131 (391)
T ss_dssp CSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHH---HSCCSE
T ss_pred CCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHh---cCCCCE
Confidence 3467543 333443332 245899999999999999887764 367889999998876665543 355789
Q ss_pred EEeccc-----c-ccccCcCccceEE
Q 012794 104 LVATDV-----A-ARGLDIPNVDLII 123 (456)
Q Consensus 104 LVaTdv-----~-~~Gidip~v~~VI 123 (456)
+|+|.- + ...+++..+.+||
T Consensus 132 iv~T~~~l~~~~~~~~~~~~~~~~vV 157 (391)
T 1xti_A 132 VVGTPGRILALARNKSLNLKHIKHFI 157 (391)
T ss_dssp EEECHHHHHHHHHTTSSCCTTCSEEE
T ss_pred EEECHHHHHHHHHcCCccccccCEEE
Confidence 999952 1 2336677888877
No 125
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=89.04 E-value=0.54 Score=42.32 Aligned_cols=86 Identities=14% Similarity=0.252 Sum_probs=53.6
Q ss_pred cccHHHH-HHHHHHHHC---CCCcEEEEcCChHHHHHHHHHHHh---------cCCEEEEeCCCCHHHHHHHHhcccCCC
Q 012794 34 ATSKRTI-LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS---------IIASEALHGDISQHQRERTLNGFRQGK 100 (456)
Q Consensus 34 ~~~k~~~-L~~ll~~~~---~~~~~IIF~~t~~~a~~l~~~L~~---------~~~~~~lhg~~~~~~R~~~l~~Fr~g~ 100 (456)
..-|..+ +..++.... ...++||.|+|++.+.++++.+.+ .+.+..++|+.+..+. .+.+. ..
T Consensus 51 GsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~-~~ 126 (219)
T 1q0u_A 51 GTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA---LEKLN-VQ 126 (219)
T ss_dssp SHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHT---TCCCS-SC
T ss_pred CChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHH---HHHcC-CC
Confidence 3457544 334444432 245899999999999999887763 3567788888754432 22222 35
Q ss_pred eEEEEecc-----cccc-ccCcCccceEE
Q 012794 101 FTVLVATD-----VAAR-GLDIPNVDLII 123 (456)
Q Consensus 101 ~~vLVaTd-----v~~~-Gidip~v~~VI 123 (456)
.+|+|+|+ .+.. .+++..+.+||
T Consensus 127 ~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lV 155 (219)
T 1q0u_A 127 PHIVIGTPGRINDFIREQALDVHTAHILV 155 (219)
T ss_dssp CSEEEECHHHHHHHHHTTCCCGGGCCEEE
T ss_pred CCEEEeCHHHHHHHHHcCCCCcCcceEEE
Confidence 78999995 2222 24556666655
No 126
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=88.82 E-value=0.79 Score=47.15 Aligned_cols=69 Identities=12% Similarity=0.147 Sum_probs=47.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----ccccc-c-CcCc
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-L-DIPN 118 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~~~G-i-dip~ 118 (456)
..++||.|+|+..+.+++..+.+ .+.+..+||+.+...+...+.. ..+|+|+|+ .+..+ + .+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHH----HCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhC----CCCEEEECHHHHHHHHHhCccccccc
Confidence 57899999999999999888874 5789999999876655443332 467999995 22333 4 6778
Q ss_pred cceEE
Q 012794 119 VDLII 123 (456)
Q Consensus 119 v~~VI 123 (456)
+++||
T Consensus 131 ~~~vV 135 (556)
T 4a2p_A 131 FTLMI 135 (556)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 88877
No 127
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=88.11 E-value=1.3 Score=43.76 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=51.6
Q ss_pred CcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----cccc-ccCcCccc
Q 012794 52 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPNVD 120 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~~~-Gidip~v~ 120 (456)
.++||.++|++.+.++++.+.+ .+.+..+||+.+..++...+.. ..+|+|+|+ .+.. .+++..+.
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTT----CCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhC----CCCEEEEChHHHHHHHHcCCcChhhCc
Confidence 4699999999999999988864 3678899999888766555432 578999995 2223 35677888
Q ss_pred eEE
Q 012794 121 LII 123 (456)
Q Consensus 121 ~VI 123 (456)
+||
T Consensus 178 ~iV 180 (417)
T 2i4i_A 178 YLV 180 (417)
T ss_dssp EEE
T ss_pred EEE
Confidence 877
No 128
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=87.87 E-value=0.77 Score=47.12 Aligned_cols=69 Identities=13% Similarity=0.220 Sum_probs=50.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----ccccc-c-CcCc
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-L-DIPN 118 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~~~G-i-dip~ 118 (456)
..++||.|+|++.+.+++..+.+ .+.+..+||+.+...+...+.. ..+|+|+|. .+..+ + ++..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIE----DNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHH----HCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhc----CCCEEEECHHHHHHHHhcCccccccc
Confidence 67899999999999998888864 4789999999876554333322 467999995 22232 3 5677
Q ss_pred cceEE
Q 012794 119 VDLII 123 (456)
Q Consensus 119 v~~VI 123 (456)
+++||
T Consensus 128 ~~~vV 132 (555)
T 3tbk_A 128 FTLMI 132 (555)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 88877
No 129
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=87.62 E-value=1.8 Score=42.96 Aligned_cols=84 Identities=24% Similarity=0.309 Sum_probs=59.4
Q ss_pred ccHHHHHHHHHHHH--CCCCcEEEEcCChHHHHHHHHHHHhc--C---CEEEEeCCCCHHHHHHHHhcccCCCeEEEEec
Q 012794 35 TSKRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTSI--I---ASEALHGDISQHQRERTLNGFRQGKFTVLVAT 107 (456)
Q Consensus 35 ~~k~~~L~~ll~~~--~~~~~~IIF~~t~~~a~~l~~~L~~~--~---~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaT 107 (456)
.-|.-....++... ....++||.|+|+..+.+.++.+.+. + .+..+||+....++..... ..+|+|+|
T Consensus 34 ~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T 108 (494)
T 1wp9_A 34 LGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVAT 108 (494)
T ss_dssp SCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEEC
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEec
Confidence 45654444433322 24689999999999999999999853 3 7899999999887766554 35799999
Q ss_pred cc------cccccCcCccceEE
Q 012794 108 DV------AARGLDIPNVDLII 123 (456)
Q Consensus 108 dv------~~~Gidip~v~~VI 123 (456)
.- ...-+.+..+++||
T Consensus 109 ~~~l~~~~~~~~~~~~~~~~vI 130 (494)
T 1wp9_A 109 PQTIENDLLAGRISLEDVSLIV 130 (494)
T ss_dssp HHHHHHHHHTTSCCTTSCSEEE
T ss_pred HHHHHHHHhcCCcchhhceEEE
Confidence 42 11235677788777
No 130
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=87.36 E-value=1.3 Score=48.46 Aligned_cols=69 Identities=12% Similarity=0.147 Sum_probs=47.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----ccccc-c-CcCc
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-L-DIPN 118 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~~~G-i-dip~ 118 (456)
..++||.|+|+..+.+++..+.+ .+.+..+||+.+...+...+.. ..+|+|+|. .+..+ + .+..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHH----TCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhC----CCCEEEEchHHHHHHHHhcccccccc
Confidence 67899999999999998887764 5789999999877665444432 578999995 22233 4 5677
Q ss_pred cceEE
Q 012794 119 VDLII 123 (456)
Q Consensus 119 v~~VI 123 (456)
+++||
T Consensus 372 ~~~iV 376 (797)
T 4a2q_A 372 FTLMI 376 (797)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 88877
No 131
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=86.44 E-value=2.4 Score=41.70 Aligned_cols=85 Identities=15% Similarity=0.233 Sum_probs=59.0
Q ss_pred ccHHHH-HHHHHHHH---CCCCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEE
Q 012794 35 TSKRTI-LSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 105 (456)
Q Consensus 35 ~~k~~~-L~~ll~~~---~~~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLV 105 (456)
.-|..+ +..++..+ ....++||.|+|++.+.++++.+.. .+.+..++|+....+....+.. ..+|+|
T Consensus 85 sGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~ivv 160 (410)
T 2j0s_A 85 TGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY----GQHVVA 160 (410)
T ss_dssp SSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHH----CCSEEE
T ss_pred CCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhc----CCCEEE
Confidence 467533 33344332 2457999999999999999998864 2567888999887776655543 458999
Q ss_pred ecc-----cccc-ccCcCccceEE
Q 012794 106 ATD-----VAAR-GLDIPNVDLII 123 (456)
Q Consensus 106 aTd-----v~~~-Gidip~v~~VI 123 (456)
+|+ .+.. .+++..+++||
T Consensus 161 ~Tp~~l~~~l~~~~~~~~~~~~vV 184 (410)
T 2j0s_A 161 GTPGRVFDMIRRRSLRTRAIKMLV 184 (410)
T ss_dssp ECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred cCHHHHHHHHHhCCccHhheeEEE
Confidence 994 3333 36677788777
No 132
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=86.28 E-value=0.36 Score=44.27 Aligned_cols=87 Identities=17% Similarity=0.308 Sum_probs=53.2
Q ss_pred cccHHHH-HHHHHHHHC----CCCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEE
Q 012794 34 ATSKRTI-LSDLITVYA----KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTV 103 (456)
Q Consensus 34 ~~~k~~~-L~~ll~~~~----~~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~v 103 (456)
..-|..+ +..++.... ...++||.++|++.+.++++.+.+ .+.+..++++.... ...........+|
T Consensus 76 GsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~I 152 (245)
T 3dkp_A 76 GSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAA---KKFGPKSSKKFDI 152 (245)
T ss_dssp TSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHH---TTTSTTSCCCCCE
T ss_pred CCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHH---HHhhhhhcCCCCE
Confidence 3567543 444444442 345799999999999999998875 24566666653221 1122233456789
Q ss_pred EEecc-----cccc---ccCcCccceEE
Q 012794 104 LVATD-----VAAR---GLDIPNVDLII 123 (456)
Q Consensus 104 LVaTd-----v~~~---Gidip~v~~VI 123 (456)
+|+|+ .+.. .+++.++.+||
T Consensus 153 ~v~Tp~~l~~~l~~~~~~~~~~~~~~lV 180 (245)
T 3dkp_A 153 LVTTPNRLIYLLKQDPPGIDLASVEWLV 180 (245)
T ss_dssp EEECHHHHHHHHHSSSCSCCCTTCCEEE
T ss_pred EEECHHHHHHHHHhCCCCcccccCcEEE
Confidence 99994 2222 36677777666
No 133
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=85.17 E-value=3.7 Score=39.86 Aligned_cols=84 Identities=17% Similarity=0.170 Sum_probs=58.0
Q ss_pred ccHHHH-HHHHHHHHC---CCCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEE
Q 012794 35 TSKRTI-LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 105 (456)
Q Consensus 35 ~~k~~~-L~~ll~~~~---~~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLV 105 (456)
.-|..+ +..++..+. ...++||.|+|+..+.++++.+.+ .+.+..++|+.+..+....+. ..+|+|
T Consensus 69 sGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v 143 (394)
T 1fuu_A 69 TGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVV 143 (394)
T ss_dssp HHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEE
T ss_pred ChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEE
Confidence 456543 344444332 356999999999999999888764 367888999998877666554 357999
Q ss_pred eccc-----cc-cccCcCccceEE
Q 012794 106 ATDV-----AA-RGLDIPNVDLII 123 (456)
Q Consensus 106 aTdv-----~~-~Gidip~v~~VI 123 (456)
+|.- +. ..+++..+++||
T Consensus 144 ~T~~~l~~~~~~~~~~~~~~~~vI 167 (394)
T 1fuu_A 144 GTPGRVFDNIQRRRFRTDKIKMFI 167 (394)
T ss_dssp ECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred ECHHHHHHHHHhCCcchhhCcEEE
Confidence 9942 22 235566777777
No 134
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=84.84 E-value=1.7 Score=41.45 Aligned_cols=84 Identities=7% Similarity=0.044 Sum_probs=54.2
Q ss_pred cccHHHH-HHHHHHHHCC---CCcEEEEcCChHHHHHHHHHHHh------cCCEEEEeCCCCHHHHHHHHhcccCCCeEE
Q 012794 34 ATSKRTI-LSDLITVYAK---GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTV 103 (456)
Q Consensus 34 ~~~k~~~-L~~ll~~~~~---~~~~IIF~~t~~~a~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~v 103 (456)
..-|..+ +..++..... ..++||.++|++.|.+++..+.. .+.+..++++...... .....+|
T Consensus 141 GsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~I 213 (300)
T 3fmo_B 141 GTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQI 213 (300)
T ss_dssp TSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSE
T ss_pred CCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCE
Confidence 3457533 4455554422 33799999999999999887763 2456777776543211 1335689
Q ss_pred EEeccc-----cc--cccCcCccceEEe
Q 012794 104 LVATDV-----AA--RGLDIPNVDLIIH 124 (456)
Q Consensus 104 LVaTdv-----~~--~Gidip~v~~VI~ 124 (456)
||+|+- +. ..+++..+.+||.
T Consensus 214 lV~TP~~l~~~l~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 214 VIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (300)
T ss_dssp EEECHHHHHHHHTTTCCCCGGGCSEEEE
T ss_pred EEECHHHHHHHHHhcCCCChhhceEEEE
Confidence 999962 22 3578889998873
No 135
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=84.81 E-value=3.2 Score=39.28 Aligned_cols=83 Identities=17% Similarity=0.225 Sum_probs=57.0
Q ss_pred cccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc
Q 012794 34 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 34 ~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
..-|..+....+.. ...++||.|+|+..+.++++.+.+ .+.+..+||+.+...+...+. ..+|+|+|.
T Consensus 41 GsGKT~~~~~~~~~--~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~v~T~ 113 (337)
T 2z0m_A 41 GSGKTAAYAIPILE--LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-----NADIVVATP 113 (337)
T ss_dssp TSSHHHHHHHHHHH--HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-----TCSEEEECH
T ss_pred CCcHHHHHHHHHHh--hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-----CCCEEEECH
Confidence 34675443333322 257999999999999999998874 257888999998876655443 267999995
Q ss_pred c-----ccc-ccCcCccceEE
Q 012794 109 V-----AAR-GLDIPNVDLII 123 (456)
Q Consensus 109 v-----~~~-Gidip~v~~VI 123 (456)
- +.. -+++..+++||
T Consensus 114 ~~l~~~~~~~~~~~~~~~~iV 134 (337)
T 2z0m_A 114 GRLLDLWSKGVIDLSSFEIVI 134 (337)
T ss_dssp HHHHHHHHTTSCCGGGCSEEE
T ss_pred HHHHHHHHcCCcchhhCcEEE
Confidence 2 122 35667777776
No 136
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=84.59 E-value=4.8 Score=38.46 Aligned_cols=85 Identities=22% Similarity=0.294 Sum_probs=57.9
Q ss_pred cccHHHHHH-HHHHHHC--CCCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEE
Q 012794 34 ATSKRTILS-DLITVYA--KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 105 (456)
Q Consensus 34 ~~~k~~~L~-~ll~~~~--~~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLV 105 (456)
..-|..+.. .++.... ...++||.|+|+..++++++.+.. .+.+..++|+.........+. ..+|+|
T Consensus 54 GsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv 128 (367)
T 1hv8_A 54 GSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVV 128 (367)
T ss_dssp SSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEE
T ss_pred CChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEE
Confidence 356755433 3343332 356899999999999999998874 356888899988766555543 467999
Q ss_pred eccc-----ccc-ccCcCccceEE
Q 012794 106 ATDV-----AAR-GLDIPNVDLII 123 (456)
Q Consensus 106 aTdv-----~~~-Gidip~v~~VI 123 (456)
+|.- +.. .+++..+++||
T Consensus 129 ~T~~~l~~~~~~~~~~~~~~~~iI 152 (367)
T 1hv8_A 129 GTPGRILDHINRGTLNLKNVKYFI 152 (367)
T ss_dssp ECHHHHHHHHHTTCSCTTSCCEEE
T ss_pred ecHHHHHHHHHcCCcccccCCEEE
Confidence 9952 222 25677777777
No 137
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=84.39 E-value=4.2 Score=39.64 Aligned_cols=86 Identities=19% Similarity=0.212 Sum_probs=57.8
Q ss_pred cccHHHH-HHHHHHHHC---CCCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEE
Q 012794 34 ATSKRTI-LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVL 104 (456)
Q Consensus 34 ~~~k~~~-L~~ll~~~~---~~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vL 104 (456)
..-|..+ +..++.... ...++||.|+|+..+.++++.+.. .+.+..++|+.........+ ....+|+
T Consensus 68 GsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iv 143 (400)
T 1s2m_A 68 GTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRL----NETVHIL 143 (400)
T ss_dssp TSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHT----TSCCSEE
T ss_pred CcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHh----cCCCCEE
Confidence 3467543 333443332 345899999999999999888874 35688889998766544333 2367899
Q ss_pred Eecc-----cccc-ccCcCccceEE
Q 012794 105 VATD-----VAAR-GLDIPNVDLII 123 (456)
Q Consensus 105 VaTd-----v~~~-Gidip~v~~VI 123 (456)
|+|. .+.+ ..++.++++||
T Consensus 144 v~T~~~l~~~~~~~~~~~~~~~~vI 168 (400)
T 1s2m_A 144 VGTPGRVLDLASRKVADLSDCSLFI 168 (400)
T ss_dssp EECHHHHHHHHHTTCSCCTTCCEEE
T ss_pred EEchHHHHHHHHhCCcccccCCEEE
Confidence 9994 2333 36677888877
No 138
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=81.15 E-value=1.8 Score=48.20 Aligned_cols=69 Identities=12% Similarity=0.147 Sum_probs=46.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----ccccc-c-CcCc
Q 012794 51 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-L-DIPN 118 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~~~G-i-dip~ 118 (456)
..++||.|+|+..+.+++..+.+ .+.+..+||+.+...+...+.. ..+|+|+|+ .+..+ + .+..
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~----~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHH----HCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhcc----CCCEEEecHHHHHHHHHcCccccccC
Confidence 57899999999999998888764 5789999999876654333322 467999995 22222 3 5667
Q ss_pred cceEE
Q 012794 119 VDLII 123 (456)
Q Consensus 119 v~~VI 123 (456)
+++||
T Consensus 372 ~~liV 376 (936)
T 4a2w_A 372 FTLMI 376 (936)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 78777
No 139
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=80.75 E-value=1.9 Score=38.01 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=34.6
Q ss_pred CCcEEEEcCChHHHHH-HHHHHHh----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc
Q 012794 51 GGKTIVFTQTKRDADE-VSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~-l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
..++||+|+|+..+++ +.+.+.. .+.+..++|+.....+...+.. ..+|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVK----SCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHHH----HCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhcc----CCCEEEECH
Confidence 5789999999999888 5555543 4678888887644322222211 467999995
No 140
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=79.92 E-value=3.7 Score=44.87 Aligned_cols=53 Identities=9% Similarity=-0.019 Sum_probs=43.2
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
.+.+++|.|+|++.|.++++.+.. ++.+.++.|+++..+|.... ..+|+|+|+
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 467899999999999999888763 37899999999987665543 368999996
No 141
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=78.76 E-value=3.5 Score=40.33 Aligned_cols=86 Identities=14% Similarity=0.193 Sum_probs=56.8
Q ss_pred ccHHHH-HHHHHHHHC---CCCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEE
Q 012794 35 TSKRTI-LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 105 (456)
Q Consensus 35 ~~k~~~-L~~ll~~~~---~~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLV 105 (456)
.-|..+ +..++.... ...++||.++|+..+.++++.+.. .+.+..++++....... +.+..+..+|+|
T Consensus 88 sGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~iiv 164 (414)
T 3eiq_A 88 TGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEV---QKLQMEAPHIIV 164 (414)
T ss_dssp SSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHH---HHHTTTCCSEEE
T ss_pred CcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHH---HHHhcCCCCEEE
Confidence 346433 444444432 456899999999999999998874 24567777876655443 334446788999
Q ss_pred ecc-----cccc-ccCcCccceEE
Q 012794 106 ATD-----VAAR-GLDIPNVDLII 123 (456)
Q Consensus 106 aTd-----v~~~-Gidip~v~~VI 123 (456)
+|+ .+.. .+++..+.+||
T Consensus 165 ~T~~~l~~~l~~~~~~~~~~~~vV 188 (414)
T 3eiq_A 165 GTPGRVFDMLNRRYLSPKYIKMFV 188 (414)
T ss_dssp ECHHHHHHHHHHTSSCSTTCCEEE
T ss_pred ECHHHHHHHHHcCCcccccCcEEE
Confidence 994 3333 35667777776
No 142
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=78.49 E-value=2.7 Score=44.72 Aligned_cols=68 Identities=12% Similarity=0.227 Sum_probs=49.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-----ccccc-c-CcCcc
Q 012794 52 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-L-DIPNV 119 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-----v~~~G-i-dip~v 119 (456)
.++||.++|+..+.+.++.+.+ .+.+..++|+.+...+...+.. ..+|+|+|+ .+..+ + ++..+
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVE----NNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHH----TCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhcc----CCCEEEECHHHHHHHHhcCcccccccc
Confidence 7899999999999999888764 4678999999865433333322 478999995 23333 4 67788
Q ss_pred ceEE
Q 012794 120 DLII 123 (456)
Q Consensus 120 ~~VI 123 (456)
++||
T Consensus 138 ~~vV 141 (696)
T 2ykg_A 138 TLMI 141 (696)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 8877
No 143
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=78.14 E-value=4.4 Score=41.88 Aligned_cols=69 Identities=14% Similarity=0.113 Sum_probs=48.0
Q ss_pred CcEEEEcCChHHHHHHHHHHHh---------cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccc-----ccc--ccC
Q 012794 52 GKTIVFTQTKRDADEVSLALTS---------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR--GLD 115 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l~~~L~~---------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv-----~~~--Gid 115 (456)
.++||.++|++.|.++++.+.+ .+.+..++++........ .+.....+|||+|+- +.. ...
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 223 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMN---KMNKLRPNIVIATPGRLIDVLEKYSNKF 223 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHH---HHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHH---HHhcCCCCEEEECcHHHHHHHHhccccc
Confidence 4899999999999999988874 134777888876654433 333346789999962 222 235
Q ss_pred cCccceEE
Q 012794 116 IPNVDLII 123 (456)
Q Consensus 116 ip~v~~VI 123 (456)
+..+.+||
T Consensus 224 ~~~~~~lV 231 (563)
T 3i5x_A 224 FRFVDYKV 231 (563)
T ss_dssp CTTCCEEE
T ss_pred cccceEEE
Confidence 66778776
No 144
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=77.83 E-value=0.57 Score=35.99 Aligned_cols=15 Identities=7% Similarity=0.000 Sum_probs=3.5
Q ss_pred cccCCCCCcCcCCCC
Q 012794 441 CFNCGKSGHRASECP 455 (456)
Q Consensus 441 ~~~c~~~gh~~~~~p 455 (456)
||+|+++||+++||+
T Consensus 27 cY~c~~~gh~~~~c~ 41 (83)
T 3nyb_B 27 AYILVDDNEKAKPKV 41 (83)
T ss_dssp CCCBC----------
T ss_pred ccccccCCccccccc
Confidence 677777777766664
No 145
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=77.06 E-value=1.1 Score=46.76 Aligned_cols=69 Identities=16% Similarity=0.148 Sum_probs=48.2
Q ss_pred CcEEEEcCChHHHHHHHHHHHhc---------CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccc-----ccc--ccC
Q 012794 52 GKTIVFTQTKRDADEVSLALTSI---------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR--GLD 115 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l~~~L~~~---------~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv-----~~~--Gid 115 (456)
.++||.++|++.+.++++.+.+. +.+..++++......... +.....+|||+|+- +.. ...
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~~~~~IlV~Tp~~l~~~l~~~~~~~ 172 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNK---MNKLRPNIVIATPGRLIDVLEKYSNKF 172 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHH---HHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred CeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHH---HhcCCCCEEEECHHHHHHHHHhccccc
Confidence 48999999999999998888741 457778888766544433 33346789999952 222 345
Q ss_pred cCccceEE
Q 012794 116 IPNVDLII 123 (456)
Q Consensus 116 ip~v~~VI 123 (456)
+..+.+||
T Consensus 173 ~~~~~~lV 180 (579)
T 3sqw_A 173 FRFVDYKV 180 (579)
T ss_dssp CTTCCEEE
T ss_pred cccCCEEE
Confidence 67778776
No 146
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=75.92 E-value=6.6 Score=42.93 Aligned_cols=53 Identities=11% Similarity=0.072 Sum_probs=43.5
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
.+..++|.|+|++.|.++++.+.. ++.+.++.|+++..+|.... ..+|+|+|+
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 457899999999999999888763 47899999999988766553 368999996
No 147
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=74.99 E-value=4.2 Score=46.20 Aligned_cols=78 Identities=18% Similarity=0.166 Sum_probs=55.5
Q ss_pred ccHHHH-HHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc----
Q 012794 35 TSKRTI-LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD---- 108 (456)
Q Consensus 35 ~~k~~~-L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd---- 108 (456)
.-|..+ +..++.....+.++||.+||+..+.+++..|.. .-.+..++|+++ .+...+|||+|+
T Consensus 210 SGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~ 278 (1108)
T 3l9o_A 210 AGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILR 278 (1108)
T ss_dssp SHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHH
T ss_pred CChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHH
Confidence 456433 333444444578999999999999999999986 346888999876 235688999993
Q ss_pred -ccccc-cCcCccceEE
Q 012794 109 -VAARG-LDIPNVDLII 123 (456)
Q Consensus 109 -v~~~G-idip~v~~VI 123 (456)
.+.++ ..+.++.+||
T Consensus 279 ~~L~~~~~~l~~l~lVV 295 (1108)
T 3l9o_A 279 SMLYRGSEVMREVAWVI 295 (1108)
T ss_dssp HHHHHCSSHHHHEEEEE
T ss_pred HHHHcCccccccCCEEE
Confidence 44444 3467788877
No 148
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=69.95 E-value=9.5 Score=42.09 Aligned_cols=53 Identities=13% Similarity=0.056 Sum_probs=43.9
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
.+.+++|.|+|+..|.+.++.+.. ++.+.++.|+++..+|.... ..+|+|+|+
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 457899999999999999888763 37899999999988777665 368999995
No 149
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=68.96 E-value=2 Score=45.72 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=46.6
Q ss_pred CcEEEEcCChHHHHHH-HHHHHh-c---CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccc-----c-------cccc
Q 012794 52 GKTIVFTQTKRDADEV-SLALTS-I---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----A-------ARGL 114 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l-~~~L~~-~---~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv-----~-------~~Gi 114 (456)
.++||.+||+..+.++ ++.|.+ . +.+..+||+.+..++...+. +..+|||+|.- + ...+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 7899999999999999 888874 2 78999999987655444333 36789999952 1 2235
Q ss_pred CcCccceEE
Q 012794 115 DIPNVDLII 123 (456)
Q Consensus 115 dip~v~~VI 123 (456)
.+..+++||
T Consensus 133 ~~~~~~lvV 141 (699)
T 4gl2_A 133 QLSDFSLII 141 (699)
T ss_dssp CGGGCSEEE
T ss_pred ecccCcEEE
Confidence 677888877
No 150
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=68.23 E-value=5 Score=40.88 Aligned_cols=82 Identities=12% Similarity=0.151 Sum_probs=54.4
Q ss_pred ccHHHHHHHHHHH-H-CCCCcEEEEcCChHHHHHHHHHHHhc-----CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEec
Q 012794 35 TSKRTILSDLITV-Y-AKGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVAT 107 (456)
Q Consensus 35 ~~k~~~L~~ll~~-~-~~~~~~IIF~~t~~~a~~l~~~L~~~-----~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaT 107 (456)
.-|..+...++.. . ....++||.|+|+..+.+.++.+.+. ..+..+|++.+..++ ..+..+|+|+|
T Consensus 139 sGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T 211 (510)
T 2oca_A 139 AGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGT 211 (510)
T ss_dssp TTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEe
Confidence 4565544333322 1 23349999999999999999999753 357888998776554 34578899999
Q ss_pred cc-cccc--cCcCccceEE
Q 012794 108 DV-AARG--LDIPNVDLII 123 (456)
Q Consensus 108 dv-~~~G--idip~v~~VI 123 (456)
.- +..- ..+.++.+||
T Consensus 212 ~~~l~~~~~~~~~~~~liI 230 (510)
T 2oca_A 212 WQTVVKQPKEWFSQFGMMM 230 (510)
T ss_dssp HHHHTTSCGGGGGGEEEEE
T ss_pred HHHHhhchhhhhhcCCEEE
Confidence 52 2221 4456777776
No 151
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=67.76 E-value=44 Score=26.53 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=44.0
Q ss_pred EEEEcCChHHHHHHHHHHH-hcCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEec
Q 012794 54 TIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 107 (456)
Q Consensus 54 ~IIF~~t~~~a~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaT 107 (456)
.+||.+..+-..++...++ .+..++.|+++...+.|.+-++.|....++|--..
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtve 59 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVE 59 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECC
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeeec
Confidence 4688888888888888887 48899999999999999999999987776655443
No 152
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=67.61 E-value=12 Score=41.23 Aligned_cols=53 Identities=11% Similarity=0.079 Sum_probs=43.6
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
.+..++|.|+|+..|.+.++.+.. ++.+.++.|+++..+|.... ..+|+++|+
T Consensus 151 ~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 151 AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 457899999999999999888763 47899999999988776654 258999995
No 153
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=65.36 E-value=7.4 Score=41.60 Aligned_cols=83 Identities=17% Similarity=0.232 Sum_probs=56.6
Q ss_pred ccHHHHH-HHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc-
Q 012794 35 TSKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD- 108 (456)
Q Consensus 35 ~~k~~~L-~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd- 108 (456)
.-|..+. ..++.....+.++|+.+|++..|.++++.+.. ++.+..++|+....++ ..+..+|+|+|+
T Consensus 51 sGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe 123 (702)
T 2p6r_A 51 AGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSE 123 (702)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHH
T ss_pred cHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHH
Confidence 4565443 33444444568999999999999999998852 4678899998755332 123678999995
Q ss_pred ----ccccccC-cCccceEEe
Q 012794 109 ----VAARGLD-IPNVDLIIH 124 (456)
Q Consensus 109 ----v~~~Gid-ip~v~~VI~ 124 (456)
.+..... +.++.+||.
T Consensus 124 ~l~~~l~~~~~~l~~~~~vIi 144 (702)
T 2p6r_A 124 KADSLIRNRASWIKAVSCLVV 144 (702)
T ss_dssp HHHHHHHTTCSGGGGCCEEEE
T ss_pred HHHHHHHcChhHHhhcCEEEE
Confidence 3333333 678888873
No 154
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=64.07 E-value=14 Score=37.04 Aligned_cols=83 Identities=7% Similarity=0.022 Sum_probs=51.1
Q ss_pred cccHHHH-HHHHHHHHCC---CCcEEEEcCChHHHHHHHHHHHh------cCCEEEEeCCCCHHHHHHHHhcccCCCeEE
Q 012794 34 ATSKRTI-LSDLITVYAK---GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTV 103 (456)
Q Consensus 34 ~~~k~~~-L~~ll~~~~~---~~~~IIF~~t~~~a~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~v 103 (456)
..-|..+ +..++..... ..++||.+||++.|.+++..+.. .+.+....++.... .......+|
T Consensus 141 GsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~I 213 (479)
T 3fmp_B 141 GTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-------RGQKISEQI 213 (479)
T ss_dssp SSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCC-------TTCCCCCSE
T ss_pred CCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccc-------ccccCCCCE
Confidence 3567654 4444443322 23899999999999999777653 24555555543221 111234579
Q ss_pred EEeccccc-------cccCcCccceEE
Q 012794 104 LVATDVAA-------RGLDIPNVDLII 123 (456)
Q Consensus 104 LVaTdv~~-------~Gidip~v~~VI 123 (456)
+|+|+-.- ..+++.++.+||
T Consensus 214 vv~Tp~~l~~~l~~~~~~~~~~~~~iV 240 (479)
T 3fmp_B 214 VIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (479)
T ss_dssp EEECHHHHHHHHTTSCCCCGGGCCEEE
T ss_pred EEECchHHHHHHHhcCCcCcccCCEEE
Confidence 99996322 357778888877
No 155
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=63.60 E-value=6.4 Score=31.08 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=33.5
Q ss_pred HHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCC
Q 012794 43 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 85 (456)
Q Consensus 43 ~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~ 85 (456)
..+..+.+..++||||.+-..+..++..|.. ++.+..|.|++.
T Consensus 47 ~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 47 EKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 3333445678999999998888889999985 678888989863
No 156
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=63.15 E-value=11 Score=30.49 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=30.7
Q ss_pred HHHHCCC-CcEEEEc-CChHHHHHHHHHHHh-cCCEEEEeCCCC
Q 012794 45 ITVYAKG-GKTIVFT-QTKRDADEVSLALTS-IIASEALHGDIS 85 (456)
Q Consensus 45 l~~~~~~-~~~IIF~-~t~~~a~~l~~~L~~-~~~~~~lhg~~~ 85 (456)
+..+.+. .++|||| .+-..+..++..|.. ++.+..|.|++.
T Consensus 82 ~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 82 AAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp HHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred HHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 3334456 7899999 576777788888874 678888999874
No 157
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=62.45 E-value=48 Score=35.13 Aligned_cols=86 Identities=19% Similarity=0.271 Sum_probs=60.8
Q ss_pred EEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHhcC--CEEEEe---------------------CC
Q 012794 27 LYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII--ASEALH---------------------GD 83 (456)
Q Consensus 27 ~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~~--~~~~lh---------------------g~ 83 (456)
+...-++...|.-++..++... ..++||.++++..|.+|+..|...+ ..+.++ ..
T Consensus 31 ~~l~g~tgs~kt~~~a~~~~~~--~~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~~~~~ 108 (664)
T 1c4o_A 31 VTLLGATGTGKTVTMAKVIEAL--GRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKD 108 (664)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH--TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCC
T ss_pred EEEEcCCCcHHHHHHHHHHHHh--CCCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhhhhhh
Confidence 3445677788999888888765 4689999999999999999998643 222222 23
Q ss_pred C--C---HHHHHHHHhcccCCCeEEEEecccccccc
Q 012794 84 I--S---QHQRERTLNGFRQGKFTVLVATDVAARGL 114 (456)
Q Consensus 84 ~--~---~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gi 114 (456)
. + ..+|..++..+....-.|+|+|--+..++
T Consensus 109 ~~~~~~i~~~R~~~l~~L~~~~~~ivV~s~~~l~~~ 144 (664)
T 1c4o_A 109 ASINPEIERLRHSTTRSLLTRRDVIVVASVSAIYGL 144 (664)
T ss_dssp CSCCHHHHHHHHHHHHHHHHCSCEEEEEEGGGCSCC
T ss_pred cccCHHHHHHHHHHHHHHHhCCCeEEEecHHHHhcC
Confidence 2 2 45788888888766656888875444553
No 158
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=60.76 E-value=14 Score=41.53 Aligned_cols=78 Identities=18% Similarity=0.177 Sum_probs=53.9
Q ss_pred ccHHHHH-HHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc----
Q 012794 35 TSKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD---- 108 (456)
Q Consensus 35 ~~k~~~L-~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd---- 108 (456)
.-|..+. ..++.....+.++||.+||+..+.+.+..|.. .-.+..++|+.+.. ...+|+|+|.
T Consensus 112 SGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~~-----------~~~~IvV~Tpe~L~ 180 (1010)
T 2xgj_A 112 AGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITIN-----------PDAGCLVMTTEILR 180 (1010)
T ss_dssp SCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEEC-----------TTCSEEEEEHHHHH
T ss_pred CChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCccC-----------CCCCEEEEcHHHHH
Confidence 4565432 23333344568999999999999999999985 33688899987532 2567999995
Q ss_pred -ccccc-cCcCccceEE
Q 012794 109 -VAARG-LDIPNVDLII 123 (456)
Q Consensus 109 -v~~~G-idip~v~~VI 123 (456)
.+.++ ..+.++.+||
T Consensus 181 ~~L~~~~~~l~~l~lVV 197 (1010)
T 2xgj_A 181 SMLYRGSEVMREVAWVI 197 (1010)
T ss_dssp HHHHHTCTTGGGEEEEE
T ss_pred HHHHcCcchhhcCCEEE
Confidence 33333 5567888877
No 159
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=60.65 E-value=12 Score=41.80 Aligned_cols=78 Identities=18% Similarity=0.180 Sum_probs=52.4
Q ss_pred ccHHHH-HHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh---cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc--
Q 012794 35 TSKRTI-LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-- 108 (456)
Q Consensus 35 ~~k~~~-L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd-- 108 (456)
.-|..+ +..++.....+.++||.+||+..+.+++..|.+ .+.+..+||+++ .+...+|+|+|+
T Consensus 65 sGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~-----------~~~~~~IlV~Tpe~ 133 (997)
T 4a4z_A 65 AGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ-----------INPDANCLIMTTEI 133 (997)
T ss_dssp SCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE-----------ECTTSSEEEEEHHH
T ss_pred CcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc-----------cCCCCCEEEECHHH
Confidence 456532 222333334567899999999999999999986 357899999874 234678999985
Q ss_pred ---ccccc-cCcCccceEE
Q 012794 109 ---VAARG-LDIPNVDLII 123 (456)
Q Consensus 109 ---v~~~G-idip~v~~VI 123 (456)
.+.++ ..+..+.+||
T Consensus 134 L~~~l~~~~~~l~~l~lvV 152 (997)
T 4a4z_A 134 LRSMLYRGADLIRDVEFVI 152 (997)
T ss_dssp HHHHHHHTCSGGGGEEEEE
T ss_pred HHHHHHhCchhhcCCCEEE
Confidence 22233 3456677766
No 160
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=60.36 E-value=1.2e+02 Score=30.19 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=33.4
Q ss_pred ceEEEEEeecCccccCCCChhHHHHHHHhhCCCCCCccccEEEeecC-c---cceeeeec-CHHHHHHHHhhc
Q 012794 248 GWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADD-R---VQGAVFDL-PEEIAKELLNKQ 315 (456)
Q Consensus 248 g~~t~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ig~i~~~~~~-~---~~~~~~dv-~~~~a~~~~~~~ 315 (456)
...+|+|..= ...++..+|..++..+.. |-.|.|+.+. + ...+||+. ..+.|..+|...
T Consensus 101 ~~~~lfV~nL----~~~~te~~L~~~F~~~G~-----I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 164 (437)
T 3pgw_S 101 AFKTLFVARV----NYDTTESKLRREFEVYGP-----IKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164 (437)
T ss_pred CCCEEEEeCC----CCCCCHHHHHHHHHHcCC-----eeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHc
Confidence 4567888542 345888999999987654 4456665431 0 01145544 234456666543
No 161
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=59.74 E-value=20 Score=26.55 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=30.0
Q ss_pred HHHHHHH--CCCCcEEEEcCChHHHHHHHHHHHh-cCC-EEEEeCCC
Q 012794 42 SDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDI 84 (456)
Q Consensus 42 ~~ll~~~--~~~~~~IIF~~t~~~a~~l~~~L~~-~~~-~~~lhg~~ 84 (456)
...+..+ .+..++||||.+-..+..++..|.. ++. +..+ |++
T Consensus 30 ~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~ 75 (85)
T 2jtq_A 30 KERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGL 75 (85)
T ss_dssp HHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EET
T ss_pred HHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCH
Confidence 3344444 5567899999998888888888885 664 5555 765
No 162
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=59.58 E-value=17 Score=33.01 Aligned_cols=61 Identities=18% Similarity=0.089 Sum_probs=44.1
Q ss_pred CcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCC-EEEEeCCCCHHHHHHHHhcccCCCeEEEEecc
Q 012794 33 TATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDISQHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 33 ~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~-~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
.-.-|..+...++... ..++||+|+|+..+.++.+.+.+ .+. +..++|+.. ...+|+|+|.
T Consensus 117 tG~GKT~~a~~~~~~~--~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T~ 179 (237)
T 2fz4_A 117 TGSGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTY 179 (237)
T ss_dssp SSTTHHHHHHHHHHHS--CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEEH
T ss_pred CCCCHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEeH
Confidence 3456776665555443 57999999999999999998886 445 777887753 1457888883
No 163
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=58.33 E-value=12 Score=29.26 Aligned_cols=45 Identities=9% Similarity=0.062 Sum_probs=33.8
Q ss_pred HHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cC-CEEEEeCCCC
Q 012794 41 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 85 (456)
Q Consensus 41 L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~-~~~~lhg~~~ 85 (456)
|...+..+.+..++||||.+-..+..++..|.. ++ .+..|.|++.
T Consensus 48 l~~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 48 LGAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp HHHHHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHHHhcCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 334444556678999999998788888888885 66 4778888864
No 164
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=57.77 E-value=28 Score=33.59 Aligned_cols=83 Identities=8% Similarity=0.035 Sum_probs=52.0
Q ss_pred cccHHHH-HHHHHHHHC---CCCcEEEEcCChHHHHHHHHHHHh------cCCEEEEeCCCCHHHHHHHHhcccCCCeEE
Q 012794 34 ATSKRTI-LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTV 103 (456)
Q Consensus 34 ~~~k~~~-L~~ll~~~~---~~~~~IIF~~t~~~a~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~v 103 (456)
..-|..+ +..++.... ...++||.++|++.+.++++.+.+ .+.+..++++.... .......+|
T Consensus 74 GsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i 146 (412)
T 3fht_A 74 GTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-------RGQKISEQI 146 (412)
T ss_dssp TSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCC-------TTCCCCCSE
T ss_pred CchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchh-------hhhcCCCCE
Confidence 3467543 344444432 234899999999999999887764 24566666654321 112335689
Q ss_pred EEecccc------c-cccCcCccceEE
Q 012794 104 LVATDVA------A-RGLDIPNVDLII 123 (456)
Q Consensus 104 LVaTdv~------~-~Gidip~v~~VI 123 (456)
+|+|+-. . ..+++..+.+||
T Consensus 147 vv~T~~~l~~~~~~~~~~~~~~~~~iV 173 (412)
T 3fht_A 147 VIGTPGTVLDWCSKLKFIDPKKIKVFV 173 (412)
T ss_dssp EEECHHHHHHHHTTSCSSCGGGCCEEE
T ss_pred EEECchHHHHHHHhcCCcChhhCcEEE
Confidence 9999521 1 346677888877
No 165
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=57.48 E-value=22 Score=34.04 Aligned_cols=82 Identities=15% Similarity=0.164 Sum_probs=52.4
Q ss_pred cccHHHH-HHHHHHHHC---CCCcEEEEcCChHHHHHHHHHHHh-----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEE
Q 012794 34 ATSKRTI-LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVL 104 (456)
Q Consensus 34 ~~~k~~~-L~~ll~~~~---~~~~~IIF~~t~~~a~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vL 104 (456)
..-|..+ +..++.... ...++||.|+|+..+.++++.+.+ .+.+..++++... .......+|+
T Consensus 54 GsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ii 125 (395)
T 3pey_A 54 GTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFE--------KNKQINAQVI 125 (395)
T ss_dssp TSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSC--------TTSCBCCSEE
T ss_pred CCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchh--------hhccCCCCEE
Confidence 3467543 333444332 356899999999999999998874 2456666665321 1122357899
Q ss_pred Eeccc-----c-ccccCcCccceEE
Q 012794 105 VATDV-----A-ARGLDIPNVDLII 123 (456)
Q Consensus 105 VaTdv-----~-~~Gidip~v~~VI 123 (456)
|+|.- + ...+++..+++||
T Consensus 126 v~T~~~l~~~~~~~~~~~~~~~~iI 150 (395)
T 3pey_A 126 VGTPGTVLDLMRRKLMQLQKIKIFV 150 (395)
T ss_dssp EECHHHHHHHHHTTCBCCTTCCEEE
T ss_pred EEcHHHHHHHHHcCCcccccCCEEE
Confidence 99952 2 2346777888877
No 166
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=55.11 E-value=21 Score=38.01 Aligned_cols=65 Identities=18% Similarity=0.071 Sum_probs=48.1
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHh--cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccc--cc-cccCcCccceEEe
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV--AA-RGLDIPNVDLIIH 124 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~--~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv--~~-~Gidip~v~~VI~ 124 (456)
.+.++||.++|++.|.++++.+.+ ...+...+|+.. .....+|+|+|+- +. ..+++.++++||.
T Consensus 256 ~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~-----------~~~~~~IlV~TPGrLl~~~~l~l~~l~~lVl 324 (666)
T 3o8b_A 256 QGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT-----------ITTGAPVTYSTYGKFLADGGCSGGAYDIIIC 324 (666)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE-----------ECCCCSEEEEEHHHHHHTTSCCTTSCSEEEE
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe-----------ccCCCCEEEECcHHHHhCCCcccCcccEEEE
Confidence 456999999999999999998874 455666777643 3557899999972 22 3467778888885
Q ss_pred c
Q 012794 125 Y 125 (456)
Q Consensus 125 ~ 125 (456)
=
T Consensus 325 D 325 (666)
T 3o8b_A 325 D 325 (666)
T ss_dssp T
T ss_pred c
Confidence 3
No 167
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=54.29 E-value=14 Score=28.84 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=31.8
Q ss_pred HHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCC-EEEEeCCC
Q 012794 44 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDI 84 (456)
Q Consensus 44 ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~-~~~lhg~~ 84 (456)
+...+.+..++||||.+-..+..++..|.. ++. +..|.|++
T Consensus 45 ~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 45 ASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp HHHHSCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred HHhcCCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 334455678899999998888888988885 664 77888885
No 168
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=54.08 E-value=17 Score=36.29 Aligned_cols=60 Identities=17% Similarity=0.090 Sum_probs=45.4
Q ss_pred cccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCC-EEEEeCCCCHHHHHHHHhcccCCCeEEEEecc
Q 012794 34 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDISQHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 34 ~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~-~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
-.-|..+...++... ..++||.|+|+..+.+.++.+.+ .+. +..+||+... ..+|+|+|.
T Consensus 118 GsGKT~~~l~~i~~~--~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T~ 179 (472)
T 2fwr_A 118 GSGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTY 179 (472)
T ss_dssp TSCHHHHHHHHHHHH--CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEEH
T ss_pred CCCHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEEc
Confidence 346766555555444 57999999999999999999987 456 8888988642 357899995
No 169
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=54.07 E-value=31 Score=28.69 Aligned_cols=59 Identities=14% Similarity=0.040 Sum_probs=35.2
Q ss_pred ceEEEEEeecCccccCCCChhHHHHHHHhhCCCCCCccccEEEeecCc---c-ceeeeec-CHHHHHHHHhhc
Q 012794 248 GWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDR---V-QGAVFDL-PEEIAKELLNKQ 315 (456)
Q Consensus 248 g~~t~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ig~i~~~~~~~---~-~~~~~dv-~~~~a~~~~~~~ 315 (456)
...+|+|..= ...++..+|..++..... |-.|.|+.+.. . .-+||+. ..+.|+.++...
T Consensus 38 ~~~~l~V~nl----p~~~t~~~l~~~F~~~G~-----i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l 101 (156)
T 1h2v_Z 38 KSCTLYVGNL----SFYTTEEQIYELFSKSGD-----IKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101 (156)
T ss_dssp TCCEEEEESC----CTTCCHHHHHHHHGGGSC-----EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHT
T ss_pred CCCEEEEeCC----CCCCCHHHHHHHHHhcCC-----eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 3467777532 346889999999987654 55677754421 0 1245555 345567777653
No 170
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=53.07 E-value=12 Score=40.07 Aligned_cols=83 Identities=17% Similarity=0.281 Sum_probs=55.5
Q ss_pred cccHHHHH-HHHHHHHC-CCCcEEEEcCChHHHHHHHHHHHh----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEec
Q 012794 34 ATSKRTIL-SDLITVYA-KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 107 (456)
Q Consensus 34 ~~~k~~~L-~~ll~~~~-~~~~~IIF~~t~~~a~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaT 107 (456)
..-|..+. ..++.... .+.++||.+|++..|.++++.+.. ++.+..++|+....++ .+ ...+|+|+|
T Consensus 56 GsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-----~~--~~~~Iiv~T 128 (715)
T 2va8_A 56 GSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDA-----WL--KNYDIIITT 128 (715)
T ss_dssp TSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCG-----GG--GGCSEEEEC
T ss_pred CCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchh-----hc--CCCCEEEEc
Confidence 34675444 33333332 467999999999999999998842 4678889998765432 12 267899999
Q ss_pred c-----ccccccC-cCccceEE
Q 012794 108 D-----VAARGLD-IPNVDLII 123 (456)
Q Consensus 108 d-----v~~~Gid-ip~v~~VI 123 (456)
+ .+..... +.++.+||
T Consensus 129 pe~l~~~~~~~~~~l~~~~~vI 150 (715)
T 2va8_A 129 YEKLDSLWRHRPEWLNEVNYFV 150 (715)
T ss_dssp HHHHHHHHHHCCGGGGGEEEEE
T ss_pred HHHHHHHHhCChhHhhccCEEE
Confidence 6 2333333 67888877
No 171
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=52.43 E-value=8.3 Score=41.33 Aligned_cols=82 Identities=21% Similarity=0.319 Sum_probs=55.0
Q ss_pred ccHHHHH-HHHHHHHC-CCCcEEEEcCChHHHHHHHHHHHh----cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecc
Q 012794 35 TSKRTIL-SDLITVYA-KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 108 (456)
Q Consensus 35 ~~k~~~L-~~ll~~~~-~~~~~IIF~~t~~~a~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTd 108 (456)
.-|..+. ..++.... .+.++||.+|++..|.++++.+.. ++.+..++|+++...+. .+..+|+|+|+
T Consensus 50 sGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tp 122 (720)
T 2zj8_A 50 SGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEW-------LGKYDIIIATA 122 (720)
T ss_dssp GCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGG-------GGGCSEEEECH
T ss_pred cHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccc-------cCCCCEEEECH
Confidence 4575433 33333321 357999999999999999999862 46889999987654331 13678999996
Q ss_pred -----cccccc-CcCccceEE
Q 012794 109 -----VAARGL-DIPNVDLII 123 (456)
Q Consensus 109 -----v~~~Gi-dip~v~~VI 123 (456)
.+.... .+.++.+||
T Consensus 123 e~l~~~~~~~~~~l~~~~~vI 143 (720)
T 2zj8_A 123 EKFDSLLRHGSSWIKDVKILV 143 (720)
T ss_dssp HHHHHHHHHTCTTGGGEEEEE
T ss_pred HHHHHHHHcChhhhhcCCEEE
Confidence 222332 366788877
No 172
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=52.16 E-value=86 Score=31.80 Aligned_cols=110 Identities=12% Similarity=0.077 Sum_probs=75.2
Q ss_pred EEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHhcC--CEEEEeC-------CCC-----HHHHHHH
Q 012794 27 LYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII--ASEALHG-------DIS-----QHQRERT 92 (456)
Q Consensus 27 ~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~~--~~~~lhg-------~~~-----~~~R~~~ 92 (456)
+...-+....|.-++..++... +.++||.|++...|.+++..|...+ .+..+=. ..+ ..+|..+
T Consensus 17 ~~l~g~~gs~ka~~~a~l~~~~--~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl~~ 94 (483)
T 3hjh_A 17 RLLGELTGAACATLVAEIAERH--AGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLST 94 (483)
T ss_dssp EEEECCCTTHHHHHHHHHHHHS--SSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHHH
T ss_pred EEEeCCCchHHHHHHHHHHHHh--CCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHHHH
Confidence 4444567778988888888654 4689999999999999999998532 2222211 111 2468889
Q ss_pred HhcccCCCeEEEEeccccccccCcC-----ccceEEecCCCCChhHHHHHh
Q 012794 93 LNGFRQGKFTVLVATDVAARGLDIP-----NVDLIIHYELPNDPETFVHRS 138 (456)
Q Consensus 93 l~~Fr~g~~~vLVaTdv~~~Gidip-----~v~~VI~~~~p~~~~~y~qr~ 138 (456)
+.++.+++..|||+|--+....=.| ...+.+..+-..+.+.+.++.
T Consensus 95 l~~L~~~~~~ivv~sv~al~~~~~p~~~~~~~~~~l~~G~~~~~~~l~~~L 145 (483)
T 3hjh_A 95 LYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQL 145 (483)
T ss_dssp HHHGGGCCSSEEEEEHHHHHBCCCCHHHHHHTCEEEETTCCCCHHHHHHHH
T ss_pred HHHHHhCCCCEEEEEHHHHhhcCCCHHHHhhCeEEEECCCCcCHHHHHHHH
Confidence 9988887777888885444442223 235577777777888777664
No 173
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=51.42 E-value=46 Score=29.32 Aligned_cols=123 Identities=11% Similarity=0.143 Sum_probs=75.0
Q ss_pred CcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEec----cccccccCcCccceEEecC
Q 012794 52 GKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT----DVAARGLDIPNVDLIIHYE 126 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaT----dv~~~Gidip~v~~VI~~~ 126 (456)
.+++++++.....+.+.+.+.. ...+..+.+++.... ...+.+ +...+|+|+- ..+..-+++|=| +
T Consensus 5 ~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v--~~a~~~-~~~~dVIISRGgta~~lr~~~~iPVV------~ 75 (196)
T 2q5c_A 5 LKIALISQNENLLNLFPKLALEKNFIPITKTASLTRAS--KIAFGL-QDEVDAIISRGATSDYIKKSVSIPSI------S 75 (196)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHH--HHHHHH-TTTCSEEEEEHHHHHHHHTTCSSCEE------E
T ss_pred CcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHH--HHHHHh-cCCCeEEEECChHHHHHHHhCCCCEE------E
Confidence 5677778887777655444443 345566777764433 223333 4567899985 455555677643 3
Q ss_pred CCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCceecCCCCHHHHH
Q 012794 127 LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 185 (456)
Q Consensus 127 ~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~~~~p~~~~i~ 185 (456)
++.+..++++.+-++-+.+. -.+++-+. .-...++.+.+.++.+++.....+.+++.
T Consensus 76 I~~s~~Dil~al~~a~~~~~-kIavvg~~-~~~~~~~~~~~ll~~~i~~~~~~~~~e~~ 132 (196)
T 2q5c_A 76 IKVTRFDTMRAVYNAKRFGN-ELALIAYK-HSIVDKHEIEAMLGVKIKEFLFSSEDEIT 132 (196)
T ss_dssp ECCCHHHHHHHHHHHGGGCS-EEEEEEES-SCSSCHHHHHHHHTCEEEEEEECSGGGHH
T ss_pred EcCCHhHHHHHHHHHHhhCC-cEEEEeCc-chhhHHHHHHHHhCCceEEEEeCCHHHHH
Confidence 45667777777766655443 33444433 23345677888899988887777776654
No 174
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=49.76 E-value=1.5e+02 Score=31.23 Aligned_cols=110 Identities=16% Similarity=0.230 Sum_probs=74.7
Q ss_pred EEEEEcCcccHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHhcCC---EEEEe--------------------CC
Q 012794 27 LYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIA---SEALH--------------------GD 83 (456)
Q Consensus 27 ~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~~~---~~~lh--------------------g~ 83 (456)
+...-+....|.-++..++... ..++||.++++..|.+++..|...+. +..+- -.
T Consensus 35 ~~l~g~~gs~k~~~~a~~~~~~--~~~~lvv~~~~~~A~~l~~el~~~~~~~~v~~fps~yd~~~pe~~~~~~d~y~~~~ 112 (661)
T 2d7d_A 35 QTLLGATGTGKTFTVSNLIKEV--NKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKD 112 (661)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH--CCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEECCCEEEEECCEEETTTTEEECCE
T ss_pred EEEECcCCcHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHHHcCCCcEEEccccccccCccccCCcchhhhhhh
Confidence 3445677788998888888765 35899999999999999999986431 22221 11
Q ss_pred C--C---HHHHHHHHhcccCCCeEEEEeccccccccCcCc----cceEEecCCCCChhHHHHHh
Q 012794 84 I--S---QHQRERTLNGFRQGKFTVLVATDVAARGLDIPN----VDLIIHYELPNDPETFVHRS 138 (456)
Q Consensus 84 ~--~---~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gidip~----v~~VI~~~~p~~~~~y~qr~ 138 (456)
. + ..+|..++..+..+.-.|||||--+..++=-|. ..+.+..+-..+.+.++++.
T Consensus 113 ~~~~~~i~~~Rl~~l~~L~~~~~~ivV~sv~al~~l~~~~~~~~~~~~l~~G~~~~~~~l~~~L 176 (661)
T 2d7d_A 113 ASINDEIDKLRHSATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKL 176 (661)
T ss_dssp EEECHHHHHHHHHHHHHHHHCSCEEEEECGGGGSCBCCHHHHHHHCEEEETTCBCCHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhCCCeEEEecHHHHcCCCCHHHHHhccEEEeCCCEeCHHHHHHHH
Confidence 1 1 567889998887665557787755546653332 23566677777777776654
No 175
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=49.68 E-value=10 Score=30.82 Aligned_cols=43 Identities=14% Similarity=0.147 Sum_probs=32.1
Q ss_pred HHHHHHCCCCcEEEEcCChHHHHHHHHHHHh-cCC-EEEEeCCCC
Q 012794 43 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 85 (456)
Q Consensus 43 ~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~-~~~lhg~~~ 85 (456)
.++..+.+..++||||.+-..+..++..|.. ++. +..|.|++.
T Consensus 74 ~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 74 QVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp HHTTTCCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred HHHhhCCCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 3333345678999999998888888888885 664 888889863
No 176
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=49.18 E-value=25 Score=32.49 Aligned_cols=82 Identities=13% Similarity=0.158 Sum_probs=48.7
Q ss_pred ccHHHHHHHHHHHH--CCCCcEEEEcCChHHHHHHHHHHHhc-----CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEec
Q 012794 35 TSKRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVAT 107 (456)
Q Consensus 35 ~~k~~~L~~ll~~~--~~~~~~IIF~~t~~~a~~l~~~L~~~-----~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaT 107 (456)
.-|..+...++... ....++||.|+|+..+++..+.+.+. ..+..++++..... -.....+|+|+|
T Consensus 139 sGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T 211 (282)
T 1rif_A 139 AGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYKNDAPVVVGT 211 (282)
T ss_dssp SCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCCTTCSEEEEC
T ss_pred CCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhccCCcEEEEc
Confidence 35655444333322 22358999999999999999988753 24566777654322 112457899999
Q ss_pred cc-cccc--cCcCccceEE
Q 012794 108 DV-AARG--LDIPNVDLII 123 (456)
Q Consensus 108 dv-~~~G--idip~v~~VI 123 (456)
.- +.+- ..+..+++||
T Consensus 212 ~~~l~~~~~~~~~~~~~vI 230 (282)
T 1rif_A 212 WQTVVKQPKEWFSQFGMMM 230 (282)
T ss_dssp HHHHTTSCGGGGGGEEEEE
T ss_pred hHHHHhhHHHHHhhCCEEE
Confidence 52 1111 2345566655
No 177
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=44.11 E-value=10 Score=30.66 Aligned_cols=42 Identities=19% Similarity=0.160 Sum_probs=30.9
Q ss_pred HHHHHHCCCCcEEEEcCChHH--HHHHHHHHHh-cCCEEEEeCCC
Q 012794 43 DLITVYAKGGKTIVFTQTKRD--ADEVSLALTS-IIASEALHGDI 84 (456)
Q Consensus 43 ~ll~~~~~~~~~IIF~~t~~~--a~~l~~~L~~-~~~~~~lhg~~ 84 (456)
..+..+.++.++||||.+-.. +..++..|.. ++.+..|.|++
T Consensus 63 ~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~ 107 (124)
T 3flh_A 63 TRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGAL 107 (124)
T ss_dssp HHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHH
T ss_pred HHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcH
Confidence 334344566789999998665 7788888874 77777888886
No 178
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=43.01 E-value=6.9 Score=30.28 Aligned_cols=37 Identities=8% Similarity=0.178 Sum_probs=30.3
Q ss_pred HCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCC
Q 012794 48 YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 84 (456)
Q Consensus 48 ~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~ 84 (456)
+.+..++||||.+-..+...+..|.. ++.+..|.|++
T Consensus 53 l~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 53 FNDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp SCTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 45667899999998888889999985 67788888875
No 179
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=42.78 E-value=5.8 Score=31.29 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=30.4
Q ss_pred HHCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCC
Q 012794 47 VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 84 (456)
Q Consensus 47 ~~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~ 84 (456)
.+.++.++||+|.+-..+...+..|.. ++.+..|.|++
T Consensus 52 ~l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 52 SFNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp GCCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred hhcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 345678899999998888888888885 78877787875
No 180
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=41.86 E-value=1.9e+02 Score=25.90 Aligned_cols=126 Identities=7% Similarity=0.066 Sum_probs=76.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHhc---CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEec----cccccccCcCccceEEe
Q 012794 52 GKTIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVAT----DVAARGLDIPNVDLIIH 124 (456)
Q Consensus 52 ~~~IIF~~t~~~a~~l~~~L~~~---~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaT----dv~~~Gidip~v~~VI~ 124 (456)
.++++.++.....+.+.+.+.+. ..+..+.+.+...... +.+....+..+|+|+- ..+..-+++|=|
T Consensus 13 ~~ii~i~~~~~L~~~~~~i~~e~~~~~~I~vi~~~le~av~~-a~~~~~~~~~dVIISRGgta~~Lr~~~~iPVV----- 86 (225)
T 2pju_A 13 KPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTY-IRKKLANERCDAIIAAGSNGAYLKSRLSVPVI----- 86 (225)
T ss_dssp CCEEEEECCHHHHHHHHHHHTTTTTTCEEEEECCCHHHHHHH-HHHHTTTSCCSEEEEEHHHHHHHHTTCSSCEE-----
T ss_pred CCEEEEEchHHHHHHHHHHHHhhCCCceEEEecCcHHHHHHH-HHHHHhcCCCeEEEeCChHHHHHHhhCCCCEE-----
Confidence 46666667766666433333332 3455555776443322 2223444457899985 455555677643
Q ss_pred cCCCCChhHHHHHhcccccCCCCceEEEeeChhhHHHHHHHHHHhCCCceecCCCCHHHHHH
Q 012794 125 YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 186 (456)
Q Consensus 125 ~~~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~e~~~~~~ie~~~~~~~~~~~~p~~~~i~~ 186 (456)
+++.+..++++.+-.+-+.+. -.+++-+. .-...++.+.+.++.+++.....+.+++..
T Consensus 87 -~I~vs~~Dil~aL~~a~~~~~-kIavVg~~-~~~~~~~~i~~ll~~~i~~~~~~~~ee~~~ 145 (225)
T 2pju_A 87 -LIKPSGYDVLQFLAKAGKLTS-SIGVVTYQ-ETIPALVAFQKTFNLRLDQRSYITEEDARG 145 (225)
T ss_dssp -EECCCHHHHHHHHHHTTCTTS-CEEEEEES-SCCHHHHHHHHHHTCCEEEEEESSHHHHHH
T ss_pred -EecCCHHHHHHHHHHHHhhCC-cEEEEeCc-hhhhHHHHHHHHhCCceEEEEeCCHHHHHH
Confidence 346677888888877766543 34444443 334567889999999999888887776643
No 181
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=40.89 E-value=44 Score=33.89 Aligned_cols=81 Identities=12% Similarity=0.170 Sum_probs=46.1
Q ss_pred ccHHHH-HHHHHHHHCC---CCcEEEEcCChHHHHHHHHHHHhc-----CCEEEEeCCCCHHHHHHHHhcccCCCeEEEE
Q 012794 35 TSKRTI-LSDLITVYAK---GGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLV 105 (456)
Q Consensus 35 ~~k~~~-L~~ll~~~~~---~~~~IIF~~t~~~a~~l~~~L~~~-----~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLV 105 (456)
.-|..+ +..++..+.. ..++||.++|+..+.++++.+.+. +.+....++... .. .....+|+|
T Consensus 169 sGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~Ivv 240 (508)
T 3fho_A 169 TGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVP---KG-----AKIDAQIVI 240 (508)
T ss_dssp TTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC------------------CCCCSEEE
T ss_pred ccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccc---cc-----ccCCCCEEE
Confidence 456543 3444444322 348999999999999999998753 222222232211 11 122578999
Q ss_pred ecccc------ccccCcCccceEE
Q 012794 106 ATDVA------ARGLDIPNVDLII 123 (456)
Q Consensus 106 aTdv~------~~Gidip~v~~VI 123 (456)
+|.-. ...+++..+++||
T Consensus 241 ~T~~~l~~~l~~~~~~~~~~~lII 264 (508)
T 3fho_A 241 GTPGTVMDLMKRRQLDARDIKVFV 264 (508)
T ss_dssp ECHHHHHHHHHTTCSCCTTCCEEE
T ss_pred ECHHHHHHHHHcCCccccCCCEEE
Confidence 99521 2246778888877
No 182
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=40.56 E-value=84 Score=27.79 Aligned_cols=79 Identities=6% Similarity=-0.039 Sum_probs=47.3
Q ss_pred EEEEEcCcccHHHHHHHHHHHH---CCCCcEEEEcCChHHHHHHHHHHHhcCCE--EEEeC--------CCCHHHHHHHH
Q 012794 27 LYAISTTATSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSIIAS--EALHG--------DISQHQRERTL 93 (456)
Q Consensus 27 ~~~~~~~~~~k~~~L~~ll~~~---~~~~~~IIF~~t~~~a~~l~~~L~~~~~~--~~lhg--------~~~~~~R~~~l 93 (456)
.+|+..+-....+...++.... ..-.+++|...|=++|..+++.+ .++.+ +.+|- .|+++.|++..
T Consensus 17 ~~YF~~~G~eNT~~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~-~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~ 95 (201)
T 1vp8_A 17 IVYFNKPGRENTEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA-EGLEVVVVTYHTGFVREGENTMPPEVEEELR 95 (201)
T ss_dssp CEEESSCSGGGHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC-TTCEEEEEECCTTSSSTTCCSSCHHHHHHHH
T ss_pred EEEecCCCcccHHHHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHh-cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHH
Confidence 3455555544444433333222 12367888888888888888877 44443 34443 37777776665
Q ss_pred hcccCCCeEEEEecccc
Q 012794 94 NGFRQGKFTVLVATDVA 110 (456)
Q Consensus 94 ~~Fr~g~~~vLVaTdv~ 110 (456)
+. .++|+-+|-++
T Consensus 96 ~~----G~~V~t~tH~l 108 (201)
T 1vp8_A 96 KR----GAKIVRQSHIL 108 (201)
T ss_dssp HT----TCEEEECCCTT
T ss_pred hC----CCEEEEEeccc
Confidence 55 88888888764
No 183
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=40.13 E-value=31 Score=26.00 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=29.1
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCC
Q 012794 49 AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 85 (456)
Q Consensus 49 ~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~ 85 (456)
.+ .++||||.+-..+..++..|.. ++.+..|.|++.
T Consensus 52 ~~-~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 52 PR-RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp CS-SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CC-CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 45 8899999998888888888885 777777888863
No 184
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=38.05 E-value=54 Score=25.49 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=29.4
Q ss_pred HCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCC
Q 012794 48 YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 84 (456)
Q Consensus 48 ~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~ 84 (456)
..+..++||||.+-..+..++..|.. ++....|.|++
T Consensus 53 ~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~ 90 (110)
T 2k0z_A 53 QHKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNV 90 (110)
T ss_dssp SCSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCG
T ss_pred cCCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCH
Confidence 35678899999998888888888885 66547788885
No 185
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=37.38 E-value=19 Score=27.74 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=30.1
Q ss_pred HCCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCC
Q 012794 48 YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 84 (456)
Q Consensus 48 ~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~ 84 (456)
+.+..++||||.+-..+..++..|.. ++.+..|.|++
T Consensus 53 l~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 35567899999998888888898985 67888888875
No 186
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=35.43 E-value=66 Score=27.11 Aligned_cols=77 Identities=14% Similarity=0.212 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHH-CCCCcEEEEcCChHHHHHHHHHHHhc----CCEEEEeCCCCHHHHHHHHhcccCCCeEEEEeccccc
Q 012794 37 KRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTSI----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 111 (456)
Q Consensus 37 k~~~L~~ll~~~-~~~~~~IIF~~t~~~a~~l~~~L~~~----~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~ 111 (456)
+.....+|+... ..+.+++|.|.+.+.++.|-+.|-.. +..-.+.++-+. ....|+|+++-..
T Consensus 24 ~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~~~------------~~~PV~L~~~~~~ 91 (150)
T 3sxu_A 24 VEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPR------------GGAPVEIAWPQKR 91 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCSST------------TCCSEEEECTTSC
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCCCC------------CCCCEEEeCCCCC
Confidence 667777777654 56789999999999999999988642 222223333211 2456888875321
Q ss_pred cccCcCccceEEecCCC
Q 012794 112 RGLDIPNVDLIIHYELP 128 (456)
Q Consensus 112 ~Gidip~v~~VI~~~~p 128 (456)
.-+.-+++||.+.-
T Consensus 92 ---~~~~~~vLinL~~~ 105 (150)
T 3sxu_A 92 ---SSSRRDILISLRTS 105 (150)
T ss_dssp ---CCSCCSEEEECCSS
T ss_pred ---CCCcCCEEEECCCC
Confidence 12345688887743
No 187
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=35.36 E-value=9.5 Score=22.16 Aligned_cols=16 Identities=38% Similarity=0.831 Sum_probs=14.8
Q ss_pred cccCCCCCcCcCCCCC
Q 012794 441 CFNCGKSGHRASECPN 456 (456)
Q Consensus 441 ~~~c~~~gh~~~~~p~ 456 (456)
|-+|..-||-..||+.
T Consensus 6 Ce~CE~FGH~t~~C~d 21 (26)
T 2hqh_E 6 CEICEMFGHWATNCND 21 (26)
T ss_dssp ETTTTEESSCGGGCCT
T ss_pred chHHHHhCcccccCCc
Confidence 9999999999999974
No 188
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=35.00 E-value=1.2e+02 Score=22.42 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=34.5
Q ss_pred CeeEEEEEcCcccHHHHHHHHHHHHC----CCCcEEEEcCChHHHHHHHHHHHh
Q 012794 24 GIKLYAISTTATSKRTILSDLITVYA----KGGKTIVFTQTKRDADEVSLALTS 73 (456)
Q Consensus 24 ~i~~~~~~~~~~~k~~~L~~ll~~~~----~~~~~IIF~~t~~~a~~l~~~L~~ 73 (456)
+....|.....++-..+|.+|...+. +.-++-|-..|+++|+..+..|.+
T Consensus 16 nfdytytvtteselqkvlnelmdyikkqgakrvrisitartkkeaekfaailik 69 (106)
T 1qys_A 16 NFDYTYTVTTESELQKVLNELMDYIKKQGAKRVRISITARTKKEAEKFAAILIK 69 (106)
T ss_dssp EEEEEEEESSSSHHHHHHHHHHHHHHHHCCSEEEEEEECSSHHHHHHHHHHHHH
T ss_pred ccceEEEEeeHHHHHHHHHHHHHHHHhcCCcEEEEEEEecchhHHHHHHHHHHH
Confidence 45555666666666666777665542 233677889999999999988753
No 189
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=34.74 E-value=53 Score=31.13 Aligned_cols=68 Identities=15% Similarity=0.222 Sum_probs=36.8
Q ss_pred cHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHhcCCEEEEe----CCCCHHHHHHHHhcccCCCeEEEEeccc
Q 012794 36 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALH----GDISQHQRERTLNGFRQGKFTVLVATDV 109 (456)
Q Consensus 36 ~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~~~~~~lh----g~~~~~~R~~~l~~Fr~g~~~vLVaTdv 109 (456)
.++....++|..+. +..-|+|+.|+..+..+...+.....+..+. ++|--++.. ..|+ .-++||.||.
T Consensus 60 e~L~~Aa~~I~~i~-~~~~ILfVgTk~~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~~t---~~f~--ePdllvV~Dp 131 (305)
T 3iz6_A 60 EKLQLAARVIVAIE-NPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQ---TSFS--EPRLLILTDP 131 (305)
T ss_dssp HHHHHHHHHHHHTT-SSCCEEEECCSHHHHHHHHHHHHHHTCEEECSCCCTTTTTTTTT---SCSS--CCSEEEESCT
T ss_pred HHHHHHHHHHHHHh-CCCeEEEEeCcHHHHHHHHHHHHHhCCccccCcccCCcccCccc---cccc--CCceeEEeCc
Confidence 34555555565554 3445779999998887776665432333332 333222111 2343 4567777763
No 190
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=34.60 E-value=45 Score=27.53 Aligned_cols=37 Identities=8% Similarity=0.013 Sum_probs=27.5
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHh-cC-CEEEEeCCCC
Q 012794 49 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 85 (456)
Q Consensus 49 ~~~~~~IIF~~t~~~a~~l~~~L~~-~~-~~~~lhg~~~ 85 (456)
.+..++||||.+-..+..++..|.. ++ .+..|.|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 4567899999987777788888875 66 5888889863
No 191
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=34.14 E-value=70 Score=28.41 Aligned_cols=80 Identities=13% Similarity=0.125 Sum_probs=46.8
Q ss_pred EEEEEcCcccHHHHHHHHHHHH---CCCCcEEEEcCChHHHHHHHHHHHhcCCEEEEeC--------CCCHHHHHHHHhc
Q 012794 27 LYAISTTATSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSIIASEALHG--------DISQHQRERTLNG 95 (456)
Q Consensus 27 ~~~~~~~~~~k~~~L~~ll~~~---~~~~~~IIF~~t~~~a~~l~~~L~~~~~~~~lhg--------~~~~~~R~~~l~~ 95 (456)
.+|+..+-....+...++.... ..-++++|...|=++|..+++.+...+-++.+|- .|+++.|++..+.
T Consensus 25 i~YF~~~G~eNT~~tl~la~era~e~~Ik~iVVASssG~TA~k~~e~~~~~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~ 104 (206)
T 1t57_A 25 ICYFEEPGKENTERVLELVGERADQLGIRNFVVASVSGETALRLSEMVEGNIVSVTHHAGFREKGQLELEDEARDALLER 104 (206)
T ss_dssp EEEESSCSGGGHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHTTCCSEEEEECCCTTSSSTTCCSSCHHHHHHHHHH
T ss_pred EEEecCCCcccHHHHHHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHccCCEEEEeCcCCCCCCCCCcCCHHHHHHHHhC
Confidence 3555555544444444433222 1235777888888888777776522222333343 4777777776666
Q ss_pred ccCCCeEEEEecccc
Q 012794 96 FRQGKFTVLVATDVA 110 (456)
Q Consensus 96 Fr~g~~~vLVaTdv~ 110 (456)
.++|+.+|-++
T Consensus 105 ----G~~V~t~tH~l 115 (206)
T 1t57_A 105 ----GVNVYAGSHAL 115 (206)
T ss_dssp ----TCEEECCSCTT
T ss_pred ----CCEEEEeeccc
Confidence 78888888765
No 192
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=33.35 E-value=13 Score=36.28 Aligned_cols=9 Identities=11% Similarity=0.043 Sum_probs=4.5
Q ss_pred cCHHHHHHH
Q 012794 218 KGTDALAAA 226 (456)
Q Consensus 218 ~~~~~~a~a 226 (456)
+.|..||+|
T Consensus 191 y~Ps~IAaA 199 (358)
T 2pk2_A 191 YTPPVVACV 199 (358)
T ss_dssp SCHHHHTTT
T ss_pred cCHHHHHHH
Confidence 345555543
No 193
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=30.79 E-value=1.9e+02 Score=24.34 Aligned_cols=71 Identities=14% Similarity=0.207 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHH-CCCCcEEEEcCChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHhcccCCCeEEEEecccccccc
Q 012794 37 KRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 114 (456)
Q Consensus 37 k~~~L~~ll~~~-~~~~~~IIF~~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~vLVaTdv~~~Gi 114 (456)
-...+.+.|... .....+.|.|+|...+..+.+.|.. ++.+..+..+-. .| .-.|.|.|-..+.|+
T Consensus 46 e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~---~~~v~v~t~~~~KGl 113 (174)
T 3dmn_A 46 GVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RL---APGVIVVPSFLAKGL 113 (174)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CC---CSSEEEEEGGGCTTC
T ss_pred HHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------cc---CCCeEEEEccccCCc
Confidence 344444444322 2256789999999999999999985 577666654421 12 235889999999999
Q ss_pred CcCcc
Q 012794 115 DIPNV 119 (456)
Q Consensus 115 dip~v 119 (456)
-++.|
T Consensus 114 Ef~~V 118 (174)
T 3dmn_A 114 EFDAV 118 (174)
T ss_dssp CEEEE
T ss_pred CCCEE
Confidence 87654
No 194
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=30.39 E-value=75 Score=28.52 Aligned_cols=62 Identities=11% Similarity=0.135 Sum_probs=35.9
Q ss_pred ceEEEEEeecCccccCCCChhHHHHHHHhhCCCCCCccccEEEeecC-c--cc-eeeeec-CHHHHHHHHhhcC
Q 012794 248 GWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADD-R--VQ-GAVFDL-PEEIAKELLNKQI 316 (456)
Q Consensus 248 g~~t~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ig~i~~~~~~-~--~~-~~~~dv-~~~~a~~~~~~~~ 316 (456)
..++|+|..= ...++..+|..++..+.. ..|-.|+|+.+. + .. .+||+. ..+.|+++|+...
T Consensus 67 ~~~~lfVgnL----~~~~te~~L~~~F~~~G~---~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~ln 133 (229)
T 3q2s_C 67 KRIALYIGNL----TWWTTDEDLTEAVHSLGV---NDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP 133 (229)
T ss_dssp --CEEEEESC----CTTCCHHHHHHHHHTTTC---CCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTST
T ss_pred CccEEEEeCC----CCCCCHHHHHHHHHHHCC---cceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 4567888532 346889999999876541 246677777652 1 01 145555 3445677776533
No 195
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=27.63 E-value=52 Score=30.42 Aligned_cols=67 Identities=10% Similarity=0.170 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHhcCCEEEEe----CCCCHHHHHHHHhcccCCCeEEEEeccc
Q 012794 37 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALH----GDISQHQRERTLNGFRQGKFTVLVATDV 109 (456)
Q Consensus 37 k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~~~~~~lh----g~~~~~~R~~~l~~Fr~g~~~vLVaTdv 109 (456)
++.....++..+. .+.-|+|+.|+..+..+...+.....+.++. ++|--.+.. .+|+ ..++||.||.
T Consensus 56 ~L~~A~~~i~~i~-~~~~vlfVgTk~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t---~~f~--~PdllvV~Dp 126 (252)
T 3u5c_A 56 KLVLAARIIAAIP-NPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYIT---RSFK--EPRLVIVTDP 126 (252)
T ss_dssp HHHHHHHHHTTSS-SGGGEEEEECSHHHHHHHHHHHHHSSCEEEESCCCTTSSSCTTS---TTCC--CCSEEEESCT
T ss_pred HHHHHHHHHHHHh-cCCEEEEEeCCcHHHHHHHHHHHHhCCceecCcccCCcccChhh---hhcc--CCceEEEeCC
Confidence 3444444444443 3445789999999888777666543333333 332221111 3454 4567777763
No 196
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=27.29 E-value=1.2e+02 Score=32.65 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=38.3
Q ss_pred HCCCCcEEEEcCChHHHHHHHHHHHh---cCCEEEEeCCCCHHHHHHHHhcc--------cCCCeEEEEecc
Q 012794 48 YAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGF--------RQGKFTVLVATD 108 (456)
Q Consensus 48 ~~~~~~~IIF~~t~~~a~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~F--------r~g~~~vLVaTd 108 (456)
....+++||.|+ ...+.+....+.+ .+.+.++||.............+ .....+|+|+|-
T Consensus 283 ~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy 353 (800)
T 3mwy_W 283 RRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTY 353 (800)
T ss_dssp HSCCSCEEEECC-TTTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECT
T ss_pred cCCCCCEEEEEC-chHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecH
Confidence 345678999999 4556666666664 46788888886544443333322 224567999984
No 197
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=27.29 E-value=53 Score=29.94 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHH
Q 012794 37 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT 72 (456)
Q Consensus 37 k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~ 72 (456)
++.....++......+..|.|+.|+..+..+.....
T Consensus 49 ~L~~A~~~i~~~~~~~~~iLfVgTk~~~~~~V~~~A 84 (231)
T 3bbn_B 49 FLSEACDLVFDASSRGKQFLIVGTKNKAADSVARAA 84 (231)
T ss_dssp HTHHHHHHSHHHHTTTCCEEEECCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHH
Confidence 333344444444345677899999988877655554
No 198
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=27.18 E-value=44 Score=27.08 Aligned_cols=36 Identities=6% Similarity=0.075 Sum_probs=29.3
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHh-cCC-EEEEeCCC
Q 012794 49 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDI 84 (456)
Q Consensus 49 ~~~~~~IIF~~t~~~a~~l~~~L~~-~~~-~~~lhg~~ 84 (456)
.+..++||||.+-..+..++..|.. ++. +..|.|++
T Consensus 84 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 121 (139)
T 2hhg_A 84 QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGF 121 (139)
T ss_dssp GSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCH
Confidence 4567899999998888888888885 664 88888986
No 199
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=26.75 E-value=42 Score=27.65 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=29.5
Q ss_pred HCCCCcEEEEcCChHHHHHHHHHHHh-cCC-EEEEeCCC
Q 012794 48 YAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDI 84 (456)
Q Consensus 48 ~~~~~~~IIF~~t~~~a~~l~~~L~~-~~~-~~~lhg~~ 84 (456)
+.+..++||||.+-..+..++..|.. ++. +..|.|++
T Consensus 53 l~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 91 (141)
T 3ilm_A 53 LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 91 (141)
T ss_dssp SCTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHH
T ss_pred CCCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHH
Confidence 44567899999998888888888885 664 77788885
No 200
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=26.29 E-value=59 Score=26.31 Aligned_cols=37 Identities=5% Similarity=0.063 Sum_probs=28.5
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHh-cCC-EEEEeCCCC
Q 012794 49 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 85 (456)
Q Consensus 49 ~~~~~~IIF~~t~~~a~~l~~~L~~-~~~-~~~lhg~~~ 85 (456)
.++.++||||.+=..+...+..|.. ++. +..|.|+|.
T Consensus 72 ~~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 72 PENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 3467899999997777777888874 674 778888874
No 201
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=26.22 E-value=42 Score=27.78 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=29.5
Q ss_pred CCCCcEEEEcCCh--HHHHHHHHHHHh-cCCEEEEeCCCC
Q 012794 49 AKGGKTIVFTQTK--RDADEVSLALTS-IIASEALHGDIS 85 (456)
Q Consensus 49 ~~~~~~IIF~~t~--~~a~~l~~~L~~-~~~~~~lhg~~~ 85 (456)
.+..++||||.+- ..+..++..|.. ++.+..|.|++.
T Consensus 70 ~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 70 SKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp CTTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 4567899999987 577788888874 778888999963
No 202
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=25.39 E-value=38 Score=27.75 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=29.7
Q ss_pred HCCCCcEEEEcCChHHHHHHHHHHHh-cC-CEEEEeCCC
Q 012794 48 YAKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDI 84 (456)
Q Consensus 48 ~~~~~~~IIF~~t~~~a~~l~~~L~~-~~-~~~~lhg~~ 84 (456)
+.+..++||||.+-..+..++..|.. ++ .+..|.|++
T Consensus 79 l~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~ 117 (137)
T 1qxn_A 79 LDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGM 117 (137)
T ss_dssp CCTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCH
T ss_pred CCCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcH
Confidence 35678999999997778888888875 67 588888996
No 203
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=22.96 E-value=2.6e+02 Score=21.62 Aligned_cols=45 Identities=9% Similarity=0.006 Sum_probs=29.3
Q ss_pred CCCcEEEEc------CChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHh
Q 012794 50 KGGKTIVFT------QTKRDADEVSLALTS-IIASEALHGDISQHQRERTLN 94 (456)
Q Consensus 50 ~~~~~IIF~------~t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~ 94 (456)
...+++||. ++...|..+...|.. ++....+.=...+..++.+.+
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~ 65 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKA 65 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHH
Confidence 467999999 578888888888885 555444432334555554433
No 204
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=22.86 E-value=82 Score=29.65 Aligned_cols=52 Identities=27% Similarity=0.194 Sum_probs=38.3
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcCC-EEEEeCCCCHHHHHHHHhcccCCCeE
Q 012794 51 GGKTIVFTQTKRDADEVSLALTSIIA-SEALHGDISQHQRERTLNGFRQGKFT 102 (456)
Q Consensus 51 ~~~~IIF~~t~~~a~~l~~~L~~~~~-~~~lhg~~~~~~R~~~l~~Fr~g~~~ 102 (456)
-.-+|||++.....+.+.+.+..+++ ++++..+++.++.+++.+.-++..+.
T Consensus 72 ~DvaIi~vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~ 124 (297)
T 2yv2_A 72 INTSIVFVPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGAT 124 (297)
T ss_dssp CCEEEECCCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred CCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 35678899988877777777777888 56668899988777777766654443
No 205
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=22.59 E-value=2.6e+02 Score=21.38 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=29.0
Q ss_pred CCCcEEEEcC------ChHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHh
Q 012794 50 KGGKTIVFTQ------TKRDADEVSLALTS-IIASEALHGDISQHQRERTLN 94 (456)
Q Consensus 50 ~~~~~IIF~~------t~~~a~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~ 94 (456)
...+++||.. +...|..+...|.. ++....+.=...+..++.+.+
T Consensus 16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~ 67 (109)
T 3ipz_A 16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKE 67 (109)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHH
Confidence 4678999987 58889888888885 555444432333444444443
No 206
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=22.52 E-value=54 Score=26.56 Aligned_cols=35 Identities=11% Similarity=0.185 Sum_probs=28.4
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHh-cC-CEEEEeCCC
Q 012794 50 KGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDI 84 (456)
Q Consensus 50 ~~~~~IIF~~t~~~a~~l~~~L~~-~~-~~~~lhg~~ 84 (456)
+..++||||.+-..+..++..|.. ++ .+..|.|++
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~ 126 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSM 126 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcH
Confidence 467899999998888888888885 66 477888886
No 207
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=21.84 E-value=84 Score=28.87 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=32.8
Q ss_pred HHHHHHHH--HCCCCcEEEEcCChHHHHHHHHHHH-h-cC-CEEEEeCCC
Q 012794 40 ILSDLITV--YAKGGKTIVFTQTKRDADEVSLALT-S-II-ASEALHGDI 84 (456)
Q Consensus 40 ~L~~ll~~--~~~~~~~IIF~~t~~~a~~l~~~L~-~-~~-~~~~lhg~~ 84 (456)
.|...+.. +.+..++||||.+-..+..++..|. . ++ .+..|.|++
T Consensus 220 ~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 269 (285)
T 1uar_A 220 ELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSW 269 (285)
T ss_dssp HHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred HHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchH
Confidence 34444444 3456789999999888888888887 5 66 588888885
No 208
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=21.64 E-value=37 Score=31.48 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHH
Q 012794 36 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT 72 (456)
Q Consensus 36 ~k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~ 72 (456)
.++....+++......+..|.|+.|+..+..+...+.
T Consensus 49 ~~L~~A~~~i~~~a~~gg~iLfVgTk~~a~~~V~~~A 85 (256)
T 2vqe_B 49 EELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRMEA 85 (256)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECCSSSSTTTTTTTT
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHH
Confidence 3444445556554445677899999988766654444
No 209
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=21.50 E-value=85 Score=29.50 Aligned_cols=61 Identities=13% Similarity=0.130 Sum_probs=41.6
Q ss_pred HHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHhcCC-EEEEeCCCCHHHHHHHHhcccCCCeE
Q 012794 41 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIA-SEALHGDISQHQRERTLNGFRQGKFT 102 (456)
Q Consensus 41 L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~~~-~~~lhg~~~~~~R~~~l~~Fr~g~~~ 102 (456)
+.++.... .-.-+|||++.....+.+.+.+..++. ++.+..+++.++.+++.+.-++..+.
T Consensus 62 l~el~~~~-~~Dv~ii~vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~ 123 (294)
T 2yv1_A 62 VKEAVKET-DANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGVK 123 (294)
T ss_dssp HHHHHHHH-CCCEEEECCCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred HHHHhhcC-CCCEEEEccCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 34444433 335678888888777777777777888 56668899988777777766654443
No 210
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=21.13 E-value=31 Score=34.37 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=25.1
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHhcCCEEEEeCCC
Q 012794 49 AKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDI 84 (456)
Q Consensus 49 ~~~~~~IIF~~t~~~a~~l~~~L~~~~~~~~lhg~~ 84 (456)
..+.++||.+||+..|+++++.+. ++.+..+++.+
T Consensus 29 ~~g~~~lvl~Pt~~La~Q~~~~~~-~~~v~~~~~~~ 63 (431)
T 2v6i_A 29 KKRLRTVILAPTRVVASEMYEALR-GEPIRYMTPAV 63 (431)
T ss_dssp HTTCCEEEEESSHHHHHHHHHHTT-TSCEEEC----
T ss_pred hCCCCEEEECcHHHHHHHHHHHhC-CCeEEEEecCc
Confidence 345799999999999999998886 45666555554
No 211
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=21.11 E-value=40 Score=30.22 Aligned_cols=66 Identities=12% Similarity=0.259 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHHHHhcCCEEEEe----CCCCHHHHHHHHhcccCCCeEEEEeccc
Q 012794 37 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALH----GDISQHQRERTLNGFRQGKFTVLVATDV 109 (456)
Q Consensus 37 k~~~L~~ll~~~~~~~~~IIF~~t~~~a~~l~~~L~~~~~~~~lh----g~~~~~~R~~~l~~Fr~g~~~vLVaTdv 109 (456)
++.....++..+ .+.-|.|+.|+..+..+...+.....+..+. |+|--.+. +++|+ ..++||.||.
T Consensus 55 ~L~~A~~~i~~i--~~~~iLfVgTk~~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~---~~~f~--~PdlliV~Dp 124 (208)
T 1vi6_A 55 RIRVAAKFLSRY--EPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPM---LSEYR--EPEVVFVNDP 124 (208)
T ss_dssp HHHHHHHHHTTS--CGGGEEEEECSGGGHHHHHHHHHHHCCEEEESSCCTTTTTCTT---STTCC--CCSEEEESCT
T ss_pred HHHHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhCCeeecCEECCCcccChh---hHhhC--CCCEEEEECC
Confidence 343334444444 4566888999988877666655332233332 33322222 34565 3567777764
No 212
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=20.43 E-value=2.7e+02 Score=20.70 Aligned_cols=53 Identities=9% Similarity=0.075 Sum_probs=35.1
Q ss_pred eEEEEEeecCccccCCCChhHHHHHHHhhCCCCCCccccEEEeecCccceeeeec-CHHHHHHHHhh
Q 012794 249 WVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDL-PEEIAKELLNK 314 (456)
Q Consensus 249 ~~t~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ig~i~~~~~~~~~~~~~dv-~~~~a~~~~~~ 314 (456)
..+|+|..= ...++..+|..++..+.. |-.|.+..++ +||+. ..+.|+.+++.
T Consensus 11 ~~~l~V~nl----~~~~t~~~l~~~F~~~G~-----i~~v~~~~~~----afV~f~~~~~a~~A~~~ 64 (103)
T 2dgu_A 11 VKVLFVRNL----ANTVTEEILEKAFSQFGK-----LERVKKLKDY----AFIHFDERDGAVKAMEE 64 (103)
T ss_dssp CCCEEEECC----CTTCCHHHHHHHHHHHSC-----EEEEEECSSC----EEEEESSHHHHHHHHHH
T ss_pred CCEEEEeCC----CCCCCHHHHHHHHHhcCC-----EEEEEEECCE----EEEEeCCHHHHHHHHHH
Confidence 356777432 345889999999987654 5567777776 56666 34556666664
Done!