Query 012795
Match_columns 456
No_of_seqs 117 out of 139
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 06:23:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012795.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012795hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05003 DUF668: Protein of un 100.0 1.3E-45 2.7E-50 309.7 8.6 86 356-441 1-89 (89)
2 PF11961 DUF3475: Domain of un 99.9 1.7E-28 3.6E-33 191.6 4.1 57 136-192 1-57 (57)
3 TIGR02865 spore_II_E stage II 72.9 35 0.00076 39.2 11.6 177 94-273 190-403 (764)
4 PF14182 YgaB: YgaB-like prote 51.0 97 0.0021 26.6 7.5 53 242-308 9-61 (79)
5 PRK04778 septation ring format 45.7 1.2E+02 0.0027 33.4 9.5 41 236-276 200-245 (569)
6 PF06160 EzrA: Septation ring 45.2 1.2E+02 0.0025 33.7 9.3 93 214-306 169-271 (560)
7 KOG4403 Cell surface glycoprot 36.4 74 0.0016 35.1 5.9 84 173-256 167-261 (575)
8 PF13094 CENP-Q: CENP-Q, a CEN 35.1 1.1E+02 0.0024 28.0 6.1 51 254-309 34-84 (160)
9 KOG3498 Preprotein translocase 34.4 25 0.00055 29.2 1.6 30 191-220 6-35 (67)
10 PF01418 HTH_6: Helix-turn-hel 33.7 38 0.00082 27.5 2.6 65 143-218 2-66 (77)
11 cd07630 BAR_SNX_like The Bin/A 32.6 3.9E+02 0.0084 25.9 9.6 53 245-307 136-193 (198)
12 PF09139 Mmp37: Mitochondrial 31.9 73 0.0016 33.5 4.9 51 381-431 240-302 (330)
13 TIGR01834 PHA_synth_III_E poly 31.8 3E+02 0.0065 29.1 9.2 28 281-309 284-311 (320)
14 PF11598 COMP: Cartilage oligo 31.1 58 0.0013 25.1 3.0 20 289-308 17-36 (45)
15 PF04156 IncA: IncA protein; 30.8 4.4E+02 0.0094 24.4 10.3 25 237-261 126-150 (191)
16 PF10168 Nup88: Nuclear pore c 28.9 4.2E+02 0.0092 30.7 10.6 92 212-304 575-670 (717)
17 KOG0994 Extracellular matrix g 28.2 3.1E+02 0.0067 34.1 9.4 128 237-389 1204-1331(1758)
18 PF04799 Fzo_mitofusin: fzo-li 28.1 2.1E+02 0.0046 27.7 6.9 23 207-229 96-118 (171)
19 PRK03333 coaE dephospho-CoA ki 27.0 88 0.0019 33.0 4.6 72 366-441 131-203 (395)
20 PF08702 Fib_alpha: Fibrinogen 27.0 1.8E+02 0.0038 27.1 6.0 22 288-309 105-126 (146)
21 PF05597 Phasin: Poly(hydroxya 26.2 5.2E+02 0.011 23.8 9.4 87 219-308 38-130 (132)
22 PF07400 IL11: Interleukin 11; 24.5 7.1E+02 0.015 24.8 9.7 100 236-337 36-147 (199)
23 PF12777 MT: Microtubule-bindi 23.1 7.7E+02 0.017 25.5 10.4 39 289-327 272-311 (344)
24 KOG4552 Vitamin-D-receptor int 23.1 6.2E+02 0.013 25.8 9.2 70 241-321 57-133 (272)
25 PF04859 DUF641: Plant protein 22.7 3.4E+02 0.0074 25.1 7.0 26 250-275 44-69 (131)
26 TIGR01069 mutS2 MutS2 family p 22.5 7.3E+02 0.016 28.9 11.0 25 301-325 583-607 (771)
27 COG4295 Uncharacterized protei 21.8 31 0.00068 34.9 0.1 28 119-157 102-130 (285)
28 KOG2991 Splicing regulator [RN 21.5 3.8E+02 0.0083 28.0 7.6 23 287-309 278-300 (330)
29 PF04111 APG6: Autophagy prote 21.4 1.9E+02 0.004 30.0 5.5 30 288-317 114-143 (314)
30 PF07613 DUF1576: Protein of u 21.1 1.3E+02 0.0029 29.3 4.1 58 389-446 80-160 (183)
31 COG2443 Sss1 Preprotein transl 21.0 57 0.0012 27.0 1.4 30 190-219 5-34 (65)
32 PF05527 DUF758: Domain of unk 20.9 6.1E+02 0.013 24.9 8.6 25 234-258 51-75 (186)
No 1
>PF05003 DUF668: Protein of unknown function (DUF668); InterPro: IPR007700 This is a family of uncharacterised plant proteins of unknown function.
Probab=100.00 E-value=1.3e-45 Score=309.71 Aligned_cols=86 Identities=63% Similarity=1.001 Sum_probs=85.2
Q ss_pred CcchhhhhhhHHHHHHHHHHHhhcCCCCCCchHHHhhhcCchhHHHHHhhhccccccc---chhhHHHHHHHHHHHHhhH
Q 012795 356 RLGPAGLALHYANIILQIDSLVARSSSMPPSTRDALYQSLPPSIKSALRSKLQSFHVK---EEFTVAQIKDEMEKTLQWL 432 (456)
Q Consensus 356 TLG~AgLALHYANIIi~IEklvs~p~~v~~~aRD~LYqmLP~sIRsaLRskLr~~~~~---de~la~ewk~am~kiL~WL 432 (456)
|||+|||||||||||+|||+|+++|++||+|+||+||||||++||++||+|||++++. |+.+++|||++|+|||+||
T Consensus 1 tLG~AgLALhYANvI~~ie~l~~~p~~v~~~aRD~LY~mLP~~ir~aLr~kL~~~~~~~~~d~~~a~~~~~~m~kiL~WL 80 (89)
T PF05003_consen 1 TLGGAGLALHYANVIIQIEKLVSRPSSVPPNARDDLYQMLPPSIRSALRSKLRSYWKKAIYDELLAAEWKDAMEKILEWL 80 (89)
T ss_pred CcchHHHHHHHHHHHHHHHHHHcCcccCCchHHHHHHhhCcHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred hhhhhhhhh
Q 012795 433 VPIATNTAK 441 (456)
Q Consensus 433 aPmAhNTir 441 (456)
+||||||||
T Consensus 81 ~P~A~nt~r 89 (89)
T PF05003_consen 81 APMAHNTIR 89 (89)
T ss_pred HHHHHhccC
Confidence 999999997
No 2
>PF11961 DUF3475: Domain of unknown function (DUF3475); InterPro: IPR021864 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 60 amino acids in length. This domain is found associated with PF05003 from PFAM.
Probab=99.95 E-value=1.7e-28 Score=191.63 Aligned_cols=57 Identities=51% Similarity=0.656 Sum_probs=56.4
Q ss_pred eehHHHHHHHHHHHHhhhcCChHHHHHHhhhccCcccchhccccChHHHHHHHHHHH
Q 012795 136 ILAFEVANTIVKGSNLMLSISESSVRQLKEVVLPAEGVQNLVSKDMDELLKIFAADK 192 (456)
Q Consensus 136 ILAFEVAntmsK~~~L~~SLSd~eI~rLr~evL~SeGV~~LVS~D~~~LL~LA~AEk 192 (456)
||||||||||||++||||||||++|.+||+||++|||||+|||+|++|||+||||||
T Consensus 1 ILAFEVAn~msk~~~L~~SLsd~~i~~Lr~evl~seGV~~LVS~D~~~LL~La~aE~ 57 (57)
T PF11961_consen 1 ILAFEVANTMSKLVNLWQSLSDEEIARLREEVLRSEGVRKLVSDDDSFLLRLACAEK 57 (57)
T ss_pred CccHHHHHHHHHHHHHHHHcChHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999999999999999999996
No 3
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=72.88 E-value=35 Score=39.15 Aligned_cols=177 Identities=15% Similarity=0.223 Sum_probs=93.7
Q ss_pred ccccccCcchhhHHhhhhcccccCCCCC--------CCc-cccccCCCcee-eehHHHHHHHHHHHH-----hhhcCChH
Q 012795 94 GRAGTVGLGKAVDVLDTLGSSMTNLNPN--------NGF-SGVGTKSNELS-ILAFEVANTIVKGSN-----LMLSISES 158 (456)
Q Consensus 94 g~a~~~g~~kav~vldtlgss~~~l~~~--------~gf-sg~~~k~~kIg-ILAFEVAntmsK~~~-----L~~SLSd~ 158 (456)
+-+|-+|+|-|+.|.--+..|+++.+.- +|+ +|.-++..|+| +++|=+++++..+.. +...|-|-
T Consensus 190 a~~gG~~~Gaa~Gv~~Gli~~l~~~~~~~~~~~~af~GLlaG~fk~~gK~g~~~g~~l~~~il~~y~~~~~~~~~~~~e~ 269 (764)
T TIGR02865 190 SYIGGSGAGAAGGVVIGVILGLANNANLYQIGVFGFAGLLGGIFKELGKIGTGIGYLVGFLILAFYTQGSVAFSLALYEA 269 (764)
T ss_pred HHhcCchHhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhhccCCcceeeHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 4457788999999999999999885432 366 78877778865 689999998875542 11111111
Q ss_pred HHHHHhhhccCc---ccchhccc-------cChHHH--HHHHHHHHHHHHhHHHhhHhh-hhccCCCc----cccchhHH
Q 012795 159 SVRQLKEVVLPA---EGVQNLVS-------KDMDEL--LKIFAADKRDDLKIFTGEVVR-FGNRSKDP----QWHNLGRY 221 (456)
Q Consensus 159 eI~rLr~evL~S---eGV~~LVS-------~D~~~L--L~LA~AEk~eeL~~~A~~VaR-lG~rC~DP----~~h~fdr~ 221 (456)
=|.-+-=-+++. +.+.+.++ ..+.+. ++=..++|++++..+=.++++ |++.|.++ .=+..|.+
T Consensus 270 ~ia~~lFll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~a~~~~~Ls~tf~~~~~~~~~~~~~~~~~~~ 349 (764)
T TIGR02865 270 LIATLLFLLIPNKIYKKLERYLDGERKQPDLQEDYMRKVREIAAEKLEEFSEVFRELSNTFVEALASNEKLTMKRKSSYL 349 (764)
T ss_pred HHHHHHHHHhhHHHHHHHHhhCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhHHHH
Confidence 111111001121 12222222 122222 333345555555444444333 33344332 12467888
Q ss_pred HHHHhhhc-----chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 012795 222 FEKISREL-----IPQKQLKQEAELLMEQLMTLVQHTAELYNELQILDRFEQDCQHK 273 (456)
Q Consensus 222 F~~l~~~~-----~~~~~~~k~ae~km~kmerlV~~Ta~LY~ELeaL~~lEq~~rrk 273 (456)
|+.+.... .-...|.++.+...+-|..+.+...+ +.+.+ .++.+.++++
T Consensus 350 ~~~v~~~vC~~C~~~~~CW~~~~~~Ty~~~~~l~~~~e~-~~~~~--~~~p~~~~~~ 403 (764)
T TIGR02865 350 LENLAERVCQSCNMKHRCWKREFDYTYSAMEELIENLEE-KKDPN--SKLPDEFERK 403 (764)
T ss_pred HHHHhhchhhCCCCCchhhCcchHHHHHHHHHHHHHHHh-cCCch--hhhhHHHHHh
Confidence 88877632 22344666777677766666655443 23333 4555555433
No 4
>PF14182 YgaB: YgaB-like protein
Probab=50.99 E-value=97 Score=26.64 Aligned_cols=53 Identities=19% Similarity=0.347 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCCCCCCCCccHHHHHHHHHHHHHHHHhhhh
Q 012795 242 LMEQLMTLVQHTAELYNELQILDRFEQDCQHKRQEEDNPVGSQKGESFAILRAELKSQRKQVKILRK 308 (456)
Q Consensus 242 km~kmerlV~~Ta~LY~ELeaL~~lEq~~rrk~~~~~~~~~~~~g~~l~~lqq~l~~QRk~Vk~LKk 308 (456)
.|+-|++|. .|-+|||.--+.|..+... +.. ..+..++++|..-|++++-+.+
T Consensus 9 Qm~tMD~LL----~LQsElERCqeIE~eL~~l-~~e---------a~l~~i~~EI~~mkk~Lk~Iq~ 61 (79)
T PF14182_consen 9 QMKTMDKLL----FLQSELERCQEIEKELKEL-ERE---------AELHSIQEEISQMKKELKEIQR 61 (79)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHH-HHH---------HhHHHHHHHHHHHHHHHHHHHH
Confidence 455555553 4667777777777777433 221 2478899999999999988764
No 5
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=45.71 E-value=1.2e+02 Score=33.43 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHhhh
Q 012795 236 KQEAELLMEQLMTLVQHTAELYNEL-----QILDRFEQDCQHKRQE 276 (456)
Q Consensus 236 ~k~ae~km~kmerlV~~Ta~LY~EL-----eaL~~lEq~~rrk~~~ 276 (456)
-.+++..+..|+.++..--.||+++ +.|++|+.+||++...
T Consensus 200 l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~ 245 (569)
T PRK04778 200 LDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEE 245 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Confidence 3677788888888888888899988 4589999999877543
No 6
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=45.24 E-value=1.2e+02 Score=33.65 Aligned_cols=93 Identities=15% Similarity=0.245 Sum_probs=56.9
Q ss_pred cccchhHHHHHHhhh-----cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHhhhcCCCCCC
Q 012795 214 QWHNLGRYFEKISRE-----LIPQKQLKQEAELLMEQLMTLVQHTAELYNEL-----QILDRFEQDCQHKRQEEDNPVGS 283 (456)
Q Consensus 214 ~~h~fdr~F~~l~~~-----~~~~~~~~k~ae~km~kmerlV~~Ta~LY~EL-----eaL~~lEq~~rrk~~~~~~~~~~ 283 (456)
++.+++.-|+.+..- ....+..-.+++..+..|+..+..--.||+++ +.|++++.+|+++..+.-....-
T Consensus 169 ~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~ 248 (560)
T PF06160_consen 169 QLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHL 248 (560)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCC
Confidence 444555555555441 11122334678888999999999999999998 57999999998775533221110
Q ss_pred CCCccHHHHHHHHHHHHHHHHhh
Q 012795 284 QKGESFAILRAELKSQRKQVKIL 306 (456)
Q Consensus 284 ~~g~~l~~lqq~l~~QRk~Vk~L 306 (456)
.-...+..++.++..=...+++|
T Consensus 249 ~i~~~i~~i~~~l~~~~~~L~~l 271 (560)
T PF06160_consen 249 DIEEEIEQIEEQLEEALALLKNL 271 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcC
Confidence 11123555666666555555544
No 7
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=36.44 E-value=74 Score=35.09 Aligned_cols=84 Identities=23% Similarity=0.224 Sum_probs=52.5
Q ss_pred chhccccChHHH---HHHHHHHHHHHHhHHHhhHhhhhccCCCc-cc-cchhHHHHHHhhhcchh------hhhHHHHHH
Q 012795 173 VQNLVSKDMDEL---LKIFAADKRDDLKIFTGEVVRFGNRSKDP-QW-HNLGRYFEKISRELIPQ------KQLKQEAEL 241 (456)
Q Consensus 173 V~~LVS~D~~~L---L~LA~AEk~eeL~~~A~~VaRlG~rC~DP-~~-h~fdr~F~~l~~~~~~~------~~~~k~ae~ 241 (456)
.-+|-+.+-+|+ |.|-----++-|..-|=.|+=||---+++ .| .+|=-+|.-+..-.-.| +..++.+.+
T Consensus 167 lPRlAv~n~~f~~~~Lgikd~~hrQKlqLkalDvVLFGpp~~~~~n~~KD~iLv~lili~v~gcw~ay~Qnk~akehv~k 246 (575)
T KOG4403|consen 167 LPRLAVPNSDFLGKVLGIKDRSHRQKLQLKALDVVLFGPPYKTNHNWTKDFILVVLILIGVGGCWFAYRQNKKAKEHVNK 246 (575)
T ss_pred ccccccCchHHhhhhhccCchHHHHhhhhhhcceEEecCCcCCCcchhhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Confidence 345555555665 44444455888888899999999666665 55 77888887776533223 223466666
Q ss_pred HHHHHHHHHHHHHHH
Q 012795 242 LMEQLMTLVQHTAEL 256 (456)
Q Consensus 242 km~kmerlV~~Ta~L 256 (456)
.|++|+-|-.+-.+|
T Consensus 247 m~kdle~Lq~aEqsl 261 (575)
T KOG4403|consen 247 MMKDLEGLQRAEQSL 261 (575)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666665544433
No 8
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=35.09 E-value=1.1e+02 Score=28.00 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=37.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhcCCCCCCCCCccHHHHHHHHHHHHHHHHhhhhc
Q 012795 254 AELYNELQILDRFEQDCQHKRQEEDNPVGSQKGESFAILRAELKSQRKQVKILRKK 309 (456)
Q Consensus 254 a~LY~ELeaL~~lEq~~rrk~~~~~~~~~~~~g~~l~~lqq~l~~QRk~Vk~LKk~ 309 (456)
..|+.+++.|+.|+..+++....-+. ..+.+..|++.++.+..+++...++
T Consensus 34 ~qL~~~~~~l~lLq~e~~~~e~~le~-----d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 34 RQLAANLHQLELLQEEIEKEEAALER-----DYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55668889999999988766543332 3456888999998888888776554
No 9
>KOG3498 consensus Preprotein translocase, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.38 E-value=25 Score=29.21 Aligned_cols=30 Identities=20% Similarity=0.441 Sum_probs=24.8
Q ss_pred HHHHHHhHHHhhHhhhhccCCCccccchhH
Q 012795 191 DKRDDLKIFTGEVVRFGNRSKDPQWHNLGR 220 (456)
Q Consensus 191 Ek~eeL~~~A~~VaRlG~rC~DP~~h~fdr 220 (456)
.+.+-++.|+++-.||-+||.-|.-..|-.
T Consensus 6 ~~~~~~~~f~k~s~rf~krC~KPdrKEf~k 35 (67)
T KOG3498|consen 6 QLVEPLRDFAKDSIRFVKRCTKPDRKEFTK 35 (67)
T ss_pred HhcchHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 356778999999999999999997666554
No 10
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=33.68 E-value=38 Score=27.48 Aligned_cols=65 Identities=14% Similarity=0.213 Sum_probs=46.0
Q ss_pred HHHHHHHHhhhcCChHHHHHHhhhccCcccchhccccChHHHHHHHHHHHHHHHhHHHhhHhhhhccCCCccccch
Q 012795 143 NTIVKGSNLMLSISESSVRQLKEVVLPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVVRFGNRSKDPQWHNL 218 (456)
Q Consensus 143 ntmsK~~~L~~SLSd~eI~rLr~evL~SeGV~~LVS~D~~~LL~LA~AEk~eeL~~~A~~VaRlG~rC~DP~~h~f 218 (456)
|.+.|+-..+..||+.|-. |-.-+-++.+.+..+-..|..+.+.+--.+|.||.+++.=..|+.|
T Consensus 2 ~l~~~i~~~~~~ls~~e~~-----------Ia~yil~~~~~~~~~si~elA~~~~vS~sti~Rf~kkLG~~gf~ef 66 (77)
T PF01418_consen 2 NLLEKIRSQYNSLSPTEKK-----------IADYILENPDEIAFMSISELAEKAGVSPSTIVRFCKKLGFSGFKEF 66 (77)
T ss_dssp -HHHHHHHHGGGS-HHHHH-----------HHHHHHH-HHHHCT--HHHHHHHCTS-HHHHHHHHHHCTTTCHHHH
T ss_pred cHHHHHHHHHhhCCHHHHH-----------HHHHHHhCHHHHHHccHHHHHHHcCCCHHHHHHHHHHhCCCCHHHH
Confidence 4566777788889988754 4445566788888999999999999999999999999985444443
No 11
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=32.63 E-value=3.9e+02 Score=25.95 Aligned_cols=53 Identities=15% Similarity=0.290 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHhhhcCCCCCCCCCccHHHHHHHHHHHHHHHHhhh
Q 012795 245 QLMTLVQHTAELYNELQ-----ILDRFEQDCQHKRQEEDNPVGSQKGESFAILRAELKSQRKQVKILR 307 (456)
Q Consensus 245 kmerlV~~Ta~LY~ELe-----aL~~lEq~~rrk~~~~~~~~~~~~g~~l~~lqq~l~~QRk~Vk~LK 307 (456)
.++.-+..+...|.+|- .|.+|++. +...... .-......+++.+|..+.-|+
T Consensus 136 ~ae~~~~~a~~~fe~iS~~~k~EL~rF~~~---Rv~~fk~-------~l~~~~E~~i~~ak~~~~~~~ 193 (198)
T cd07630 136 QAEEAKKKAETEFEEISSLAKKELERFHRQ---RVLELQS-------ALVCYAESQIKNAKEAAAVLT 193 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677888874 45555542 1111110 124456778888887765544
No 12
>PF09139 Mmp37: Mitochondrial matrix Mmp37; InterPro: IPR015222 MMp37 is a mitochondrial matrix protein that functions in the translocation of proteins across the mitochondrial inner membrane [].
Probab=31.90 E-value=73 Score=33.50 Aligned_cols=51 Identities=16% Similarity=0.285 Sum_probs=39.9
Q ss_pred CCCCCchHHHhhhcCchhHHHHHhhhccccc------------ccchhhHHHHHHHHHHHHhh
Q 012795 381 SSMPPSTRDALYQSLPPSIKSALRSKLQSFH------------VKEEFTVAQIKDEMEKTLQW 431 (456)
Q Consensus 381 ~~v~~~aRD~LYqmLP~sIRsaLRskLr~~~------------~~de~la~ewk~am~kiL~W 431 (456)
+..++++|-.|-..||.++|..|..+..... ..|+.+...++.++.+|-.|
T Consensus 240 qd~s~~~~~~~l~~LP~~~~~~l~~~~~~~~~~~d~~~~~~~ia~d~~~~~~v~~aI~~IV~~ 302 (330)
T PF09139_consen 240 QDKSPSARAHLLRRLPKTLRSRLYRQYDRKGRNRDGEEFLRAIASDPDLREVVRRAIRRIVRR 302 (330)
T ss_pred eCCCHHHHHHHHHHCCHHHHHHHHHHhccCCCccchhHHHHHHhcChhHHHHHHHHHHhHhhh
Confidence 3467889999999999999999999876433 22566678888888888776
No 13
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=31.78 E-value=3e+02 Score=29.08 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=20.6
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHHhhhhc
Q 012795 281 VGSQKGESFAILRAELKSQRKQVKILRKK 309 (456)
Q Consensus 281 ~~~~~g~~l~~lqq~l~~QRk~Vk~LKk~ 309 (456)
+.|.+. -+++++++|-.=|++||+||+.
T Consensus 284 nlPTRs-ElDe~~krL~ELrR~vr~L~k~ 311 (320)
T TIGR01834 284 NLPTRS-ELDEAHQRIQQLRREVKSLKKR 311 (320)
T ss_pred CCCCHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 445444 3888888888888888888864
No 14
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=31.10 E-value=58 Score=25.10 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 012795 289 FAILRAELKSQRKQVKILRK 308 (456)
Q Consensus 289 l~~lqq~l~~QRk~Vk~LKk 308 (456)
+.+++..++.|+||...||.
T Consensus 17 l~elk~~l~~Q~kE~~~LRn 36 (45)
T PF11598_consen 17 LQELKELLRQQIKETRFLRN 36 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999985
No 15
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=30.77 E-value=4.4e+02 Score=24.40 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 012795 237 QEAELLMEQLMTLVQHTAELYNELQ 261 (456)
Q Consensus 237 k~ae~km~kmerlV~~Ta~LY~ELe 261 (456)
+..+.+++.++.-+....+-++++.
T Consensus 126 ~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 126 KSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455544444444444444444
No 16
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=28.86 E-value=4.2e+02 Score=30.68 Aligned_cols=92 Identities=15% Similarity=0.180 Sum_probs=38.6
Q ss_pred CccccchhHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHhhhcCCCCCCCCCc
Q 012795 212 DPQWHNLGRYFEKISRELIPQKQLKQEAELLMEQLMTLVQHTAELYNELQI----LDRFEQDCQHKRQEEDNPVGSQKGE 287 (456)
Q Consensus 212 DP~~h~fdr~F~~l~~~~~~~~~~~k~ae~km~kmerlV~~Ta~LY~ELea----L~~lEq~~rrk~~~~~~~~~~~~g~ 287 (456)
+-|++.++.+-++...=......+.++.|...++-+.|++....+.+-++. |.+-|+++++.++..... ...-..
T Consensus 575 e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~-l~~l~~ 653 (717)
T PF10168_consen 575 EQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQ-LQDLKA 653 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH-HHHHHH
Confidence 334445554444433221222223333333333333344433444433332 566666665544432210 000123
Q ss_pred cHHHHHHHHHHHHHHHH
Q 012795 288 SFAILRAELKSQRKQVK 304 (456)
Q Consensus 288 ~l~~lqq~l~~QRk~Vk 304 (456)
.++.++.++..|+.++.
T Consensus 654 si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 654 SIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45666666666666555
No 17
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=28.16 E-value=3.1e+02 Score=34.13 Aligned_cols=128 Identities=14% Similarity=0.121 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCCCCCCCCccHHHHHHHHHHHHHHHHhhhhcccccccH
Q 012795 237 QEAELLMEQLMTLVQHTAELYNELQILDRFEQDCQHKRQEEDNPVGSQKGESFAILRAELKSQRKQVKILRKKSLWSRSL 316 (456)
Q Consensus 237 k~ae~km~kmerlV~~Ta~LY~ELeaL~~lEq~~rrk~~~~~~~~~~~~g~~l~~lqq~l~~QRk~Vk~LKk~SLWsrt~ 316 (456)
.+|+.|++....++++++-=-.+++.|+..=+.+||.++.... ..++....|....+.+..--++..+|..
T Consensus 1204 ~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e-~L~~~E~~Lsdi~~~~~~a~~~LesLq~-------- 1274 (1758)
T KOG0994|consen 1204 LDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTE-DLPQEEETLSDITNSLPLAGKDLESLQR-------- 1274 (1758)
T ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhhhhhhhccchhhhhHHHHHH--------
Confidence 6788888888887755544444444444444444444432111 0122223444444444444444444432
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcchhhhhhhHHHHHHHHHHHhhcCCCCCCchHH
Q 012795 317 EEVMEKLVDIVTFLLLEMHDAFGSTDDHFPFKGSMSNHQRLGPAGLALHYANIILQIDSLVARSSSMPPSTRD 389 (456)
Q Consensus 317 d~vVekLvriV~~i~~rI~~VFG~~~~~~~~~~~~~~~~TLG~AgLALHYANIIi~IEklvs~p~~v~~~aRD 389 (456)
=++.|.+.+.+..+-|- ..+...-+|+--+--||+--...+|+.+.....-.+.++|
T Consensus 1275 ------~~~~l~~~~keL~e~~~----------~ik~sdi~GA~~~~r~a~~~s~ea~~r~~~s~~~l~s~~~ 1331 (1758)
T KOG0994|consen 1275 ------EFNGLLTTYKELREQLE----------KIKESDILGAFNSTRHAYEQSAEAERRVDASSRELASLVD 1331 (1758)
T ss_pred ------HHHHHHHHHHHHHHHHH----------HhhccCchhHHHHHHHHHHHHHHHHHhhhhhhhcccchhh
Confidence 23444555555555431 1123455777777888888888888877655444444444
No 18
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=28.13 E-value=2.1e+02 Score=27.72 Aligned_cols=23 Identities=9% Similarity=0.271 Sum_probs=7.3
Q ss_pred hccCCCccccchhHHHHHHhhhc
Q 012795 207 GNRSKDPQWHNLGRYFEKISREL 229 (456)
Q Consensus 207 G~rC~DP~~h~fdr~F~~l~~~~ 229 (456)
+..|.+--.+.++..|++|....
T Consensus 96 sancs~QVqqeL~~tf~rL~~~V 118 (171)
T PF04799_consen 96 SANCSHQVQQELSSTFARLCQQV 118 (171)
T ss_dssp --------------HHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999998754
No 19
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=27.05 E-value=88 Score=33.00 Aligned_cols=72 Identities=13% Similarity=0.195 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCchHHHhhhcCchhHHHHHhhhcccccccchhhHHHHHHHHHHHH-hhHhhhhhhhhh
Q 012795 366 YANIILQIDSLVARSSSMPPSTRDALYQSLPPSIKSALRSKLQSFHVKEEFTVAQIKDEMEKTL-QWLVPIATNTAK 441 (456)
Q Consensus 366 YANIIi~IEklvs~p~~v~~~aRD~LYqmLP~sIRsaLRskLr~~~~~de~la~ewk~am~kiL-~WLaPmAhNTir 441 (456)
+|..=++++++..+-..-..++...+..-.|..-| .++-.+......+.++....+.+++ .||.|+||||--
T Consensus 131 ~ap~e~ri~Rl~~rRg~s~~~a~~ri~~Q~~~e~k----~~~AD~vIdN~~s~e~l~~~v~~~l~~~~~~~~~~~~~ 203 (395)
T PRK03333 131 DADVEVRVRRLVEQRGMAEADARARIAAQASDEQR----RAVADVWLDNSGTPDELVEAVRALWADRLLPFAHNLRA 203 (395)
T ss_pred ECCHHHHHHHHHhcCCCCHHHHHHHHHhcCChHHH----HHhCCEEEECCCCHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 45666777887764332222222223322332222 1122333334556667777766554 899999999853
No 20
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=26.95 E-value=1.8e+02 Score=27.08 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=17.9
Q ss_pred cHHHHHHHHHHHHHHHHhhhhc
Q 012795 288 SFAILRAELKSQRKQVKILRKK 309 (456)
Q Consensus 288 ~l~~lqq~l~~QRk~Vk~LKk~ 309 (456)
++..||.-+..|++++++|+..
T Consensus 105 ~I~~Lq~~~~~~~~ki~~Le~~ 126 (146)
T PF08702_consen 105 NIRVLQNILRSNRQKIQRLEQD 126 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888753
No 21
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=26.20 E-value=5.2e+02 Score=23.83 Aligned_cols=87 Identities=20% Similarity=0.241 Sum_probs=47.2
Q ss_pred hHHHHHHhhhc-chhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh-cCCCCCCCCCccHHHH
Q 012795 219 GRYFEKISREL-IPQKQLKQEAELLMEQ----LMTLVQHTAELYNELQILDRFEQDCQHKRQE-EDNPVGSQKGESFAIL 292 (456)
Q Consensus 219 dr~F~~l~~~~-~~~~~~~k~ae~km~k----merlV~~Ta~LY~ELeaL~~lEq~~rrk~~~-~~~~~~~~~g~~l~~l 292 (456)
..+|+.|+.+. ..+...++.++..+.. |...|..... +-.+.++++|+.+-..... -...+.|.+ .-++.|
T Consensus 38 ~k~F~~LVk~Ge~~e~~~~~~~~e~~~~~~~~~~~~~~~~~~--~~~~~~dklE~~fd~rV~~aL~rLgvPs~-~dv~~L 114 (132)
T PF05597_consen 38 SKVFEALVKEGEKLEKKTRKKAEEQVEEARDQVKSRVDDVKE--RATGQWDKLEQAFDERVARALNRLGVPSR-KDVEAL 114 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHH
Confidence 35788888753 2233333333333332 2233332222 2335677788776554432 112233443 348889
Q ss_pred HHHHHHHHHHHHhhhh
Q 012795 293 RAELKSQRKQVKILRK 308 (456)
Q Consensus 293 qq~l~~QRk~Vk~LKk 308 (456)
..+|..--.+|..|..
T Consensus 115 ~~rId~L~~~v~~l~~ 130 (132)
T PF05597_consen 115 SARIDQLTAQVERLAN 130 (132)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9998888888887764
No 22
>PF07400 IL11: Interleukin 11; InterPro: IPR020438 Interleukins (IL) are a group of cytokines that play an important role in the immune system. They modulate inflammation and immunity by regulating growth, mobility and differentiation of lymphoid and other cells. Interleukin-11 (IL-11) is a pleiotropic cytokine that stimulates megakaryocytopoiesis, resulting in increased production of platelets, as well as activating osteoclasts, inhibiting epithelial cell proliferation and apoptosis, and inhibiting macrophage mediator production. These functions may be particularly important in mediating the hematopoietic, osseous and mucosal protective effects of IL-11 []. The cytokine also possesses anti-inflammatory activity, and has been proposed as a therapeutic agent in the treatment of chronic inflammatory diseases, such as Crohn's disease and rheumatoid arthritis [].
Probab=24.46 E-value=7.1e+02 Score=24.84 Aligned_cols=100 Identities=24% Similarity=0.279 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh---hcCC----CCCCCCCccHHHHHHHHHHHHHHHHhhhh
Q 012795 236 KQEAELLMEQLMTLVQHTAELYNELQILDRFEQDCQHKRQ---EEDN----PVGSQKGESFAILRAELKSQRKQVKILRK 308 (456)
Q Consensus 236 ~k~ae~km~kmerlV~~Ta~LY~ELeaL~~lEq~~rrk~~---~~~~----~~~~~~g~~l~~lqq~l~~QRk~Vk~LKk 308 (456)
+-|+++.+..--.+...|.+||+-|.. .|+.+...++. .... .+.-+-...+..|...+++.+++|.-||+
T Consensus 36 ~~e~D~~~n~tr~LL~dTr~l~~ql~~--~f~~d~eH~l~SLP~Ls~sA~dl~sLqv~~tLSqL~adLkSy~~HfdWL~r 113 (199)
T PF07400_consen 36 RAEFDSLVNLTRNLLKDTRQLAAQLKD--KFPTDGEHRLDSLPVLSMSASDLGSLQVKPTLSQLHADLKSYEHHFDWLRR 113 (199)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhh--cCCCccCCCCCCchhhhccHHhhcccccChHHHHHHHHHHHHHHHHHHHHh
Confidence 355665554444566667777776532 33333221211 1000 12233345789999999999999999998
Q ss_pred cc---ccc--ccHHHHHHHHHHHHHHHHHHHHHh
Q 012795 309 KS---LWS--RSLEEVMEKLVDIVTFLLLEMHDA 337 (456)
Q Consensus 309 ~S---LWs--rt~d~vVekLvriV~~i~~rI~~V 337 (456)
.+ +=. ..+.++..++-+.+.-|..-+..+
T Consensus 114 a~~~sl~p~~p~lg~~~s~l~~Ll~~lq~lM~rl 147 (199)
T PF07400_consen 114 ASGKSLHPLEPELGTMHSRLKRLLNRLQLLMSRL 147 (199)
T ss_pred ccccccCccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 66 333 456677777777766665555544
No 23
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=23.15 E-value=7.7e+02 Score=25.51 Aligned_cols=39 Identities=28% Similarity=0.448 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhhh-hcccccccHHHHHHHHHHHH
Q 012795 289 FAILRAELKSQRKQVKILR-KKSLWSRSLEEVMEKLVDIV 327 (456)
Q Consensus 289 l~~lqq~l~~QRk~Vk~LK-k~SLWsrt~d~vVekLvriV 327 (456)
+...+.++..-.+.+..|. ++.=|..+++..-+.+..++
T Consensus 272 ~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~ 311 (344)
T PF12777_consen 272 IEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLV 311 (344)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHH
T ss_pred HHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccH
Confidence 4455566666666666664 45569999999877766655
No 24
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=23.11 E-value=6.2e+02 Score=25.80 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH-HHH------HHHHHHhhhcCCCCCCCCCccHHHHHHHHHHHHHHHHhhhhccccc
Q 012795 241 LLMEQLMTLVQHTAELYNELQILD-RFE------QDCQHKRQEEDNPVGSQKGESFAILRAELKSQRKQVKILRKKSLWS 313 (456)
Q Consensus 241 ~km~kmerlV~~Ta~LY~ELeaL~-~lE------q~~rrk~~~~~~~~~~~~g~~l~~lqq~l~~QRk~Vk~LKk~SLWs 313 (456)
..+++|++++-.-++..|+|+.|. ..| |.+++-++. .-.+|-..++.-+|..|+.++.-+=-
T Consensus 57 ~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~-----------aE~iLtta~fqA~qKLksi~~A~krp 125 (272)
T KOG4552|consen 57 DEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKS-----------AEVILTTACFQANQKLKSIKEAEKRP 125 (272)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 468888888888888888887763 222 222222221 23456777788888888888877666
Q ss_pred ccHHHHHH
Q 012795 314 RSLEEVME 321 (456)
Q Consensus 314 rt~d~vVe 321 (456)
-+-|+++.
T Consensus 126 vsSEelIK 133 (272)
T KOG4552|consen 126 VSSEELIK 133 (272)
T ss_pred CCHHHHHH
Confidence 66666544
No 25
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=22.74 E-value=3.4e+02 Score=25.13 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhh
Q 012795 250 VQHTAELYNELQILDRFEQDCQHKRQ 275 (456)
Q Consensus 250 V~~Ta~LY~ELeaL~~lEq~~rrk~~ 275 (456)
..+-..+-.||+.|.+|-+-|+++..
T Consensus 44 ~aAD~~vVsEL~~Ls~LK~~y~~~~~ 69 (131)
T PF04859_consen 44 QAADEAVVSELRRLSELKRRYRKKQS 69 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34445667899999999999987644
No 26
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=22.53 E-value=7.3e+02 Score=28.92 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=11.6
Q ss_pred HHHHhhhhcccccccHHHHHHHHHH
Q 012795 301 KQVKILRKKSLWSRSLEEVMEKLVD 325 (456)
Q Consensus 301 k~Vk~LKk~SLWsrt~d~vVekLvr 325 (456)
..++.||+.+.=.+...++...+.+
T Consensus 583 ~~i~~lk~~~~~~~~~~~~~~~~~~ 607 (771)
T TIGR01069 583 SIIRELKEKKIHKAKEIKSIEDLVK 607 (771)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHH
Confidence 3344577654333334444444433
No 27
>COG4295 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.84 E-value=31 Score=34.92 Aligned_cols=28 Identities=32% Similarity=0.637 Sum_probs=22.6
Q ss_pred CCCCCc-cccccCCCceeeehHHHHHHHHHHHHhhhcCCh
Q 012795 119 NPNNGF-SGVGTKSNELSILAFEVANTIVKGSNLMLSISE 157 (456)
Q Consensus 119 ~~~~gf-sg~~~k~~kIgILAFEVAntmsK~~~L~~SLSd 157 (456)
||+||| +|+-...+ -+.++.+||.||-.
T Consensus 102 NPGGGF~~GAqAQEE-----------slaR~S~lY~sL~k 130 (285)
T COG4295 102 NPGGGFQSGAQAQEE-----------SLARASSLYPSLIK 130 (285)
T ss_pred CCCCccccchhhhhH-----------HHhhhccchHhhhc
Confidence 899999 88866443 46899999999865
No 28
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=21.53 E-value=3.8e+02 Score=28.04 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.3
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhc
Q 012795 287 ESFAILRAELKSQRKQVKILRKK 309 (456)
Q Consensus 287 ~~l~~lqq~l~~QRk~Vk~LKk~ 309 (456)
..+..||++|+--|+++.+|++.
T Consensus 278 sTiliLQq~Lketr~~Iq~l~k~ 300 (330)
T KOG2991|consen 278 STILILQQKLKETRKEIQRLKKG 300 (330)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999873
No 29
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=21.42 E-value=1.9e+02 Score=29.95 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHHHHHHHhhhhcccccccHH
Q 012795 288 SFAILRAELKSQRKQVKILRKKSLWSRSLE 317 (456)
Q Consensus 288 ~l~~lqq~l~~QRk~Vk~LKk~SLWsrt~d 317 (456)
....+...+..-+.++..|++...||.+|.
T Consensus 114 e~~sl~~q~~~~~~~L~~L~ktNv~n~~F~ 143 (314)
T PF04111_consen 114 ERDSLKNQYEYASNQLDRLRKTNVYNDTFH 143 (314)
T ss_dssp HHHHHHHHHHHHHHHHHCHHT--TTTTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhceee
Confidence 466778888888999999999999999884
No 30
>PF07613 DUF1576: Protein of unknown function (DUF1576); InterPro: IPR011470 This small family is found in several undescribed proteins. The alignment is distinguished by the frequent occurrence of conserved glycine and aromatic residues.
Probab=21.11 E-value=1.3e+02 Score=29.28 Aligned_cols=58 Identities=22% Similarity=0.194 Sum_probs=36.2
Q ss_pred HHhhhcCchhHHHHHhhhcccccccch-----------hhHHHHHHHH---HHHHhh---------Hhhhhhhhhhhhcc
Q 012795 389 DALYQSLPPSIKSALRSKLQSFHVKEE-----------FTVAQIKDEM---EKTLQW---------LVPIATNTAKAHHG 445 (456)
Q Consensus 389 D~LYqmLP~sIRsaLRskLr~~~~~de-----------~la~ewk~am---~kiL~W---------LaPmAhNTirwh~g 445 (456)
.++++-+|--+=.-|-++++....++- ..+.|+.-.. .-+|.| +.|+|.|+.++|+|
T Consensus 80 Kn~~Ni~PI~lGv~Lys~~~~~~~~~~il~aLFgT~LAPi~s~~~f~~~~~~~~lG~~~Gi~~Gfi~~~la~~~~~~H~G 159 (183)
T PF07613_consen 80 KNIKNIWPIILGVYLYSKLSKEPFSSYILIALFGTALAPIVSEFAFGLGLPLPILGILIGIIAGFIHPPLASNFGKLHGG 159 (183)
T ss_pred CcHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 356777788888888888876554432 2223330000 003454 36999999999999
Q ss_pred C
Q 012795 446 F 446 (456)
Q Consensus 446 f 446 (456)
|
T Consensus 160 ~ 160 (183)
T PF07613_consen 160 Y 160 (183)
T ss_pred c
Confidence 7
No 31
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=21.04 E-value=57 Score=27.01 Aligned_cols=30 Identities=27% Similarity=0.542 Sum_probs=26.4
Q ss_pred HHHHHHHhHHHhhHhhhhccCCCccccchh
Q 012795 190 ADKRDDLKIFTGEVVRFGNRSKDPQWHNLG 219 (456)
Q Consensus 190 AEk~eeL~~~A~~VaRlG~rC~DP~~h~fd 219 (456)
-++.|+++.|=++-.|+=++|+-|.|..|-
T Consensus 5 ~~~~e~~~~~lke~~rvl~~arKP~~eEy~ 34 (65)
T COG2443 5 MDKPEELREFLKEYRRVLKVARKPDWEEYS 34 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 478899999999999999999999986654
No 32
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=20.91 E-value=6.1e+02 Score=24.87 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 012795 234 QLKQEAELLMEQLMTLVQHTAELYN 258 (456)
Q Consensus 234 ~~~k~ae~km~kmerlV~~Ta~LY~ 258 (456)
+.+++|++.++.+.+.|-...-||+
T Consensus 51 ~~kkeA~ki~KniIKi~vKigvl~r 75 (186)
T PF05527_consen 51 GNKKEAEKIIKNIIKIVVKIGVLYR 75 (186)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHhheeee
Confidence 3478999999999999999999986
Done!