Query 012795
Match_columns 456
No_of_seqs 117 out of 139
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 16:23:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012795.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012795hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ghg_A Fibrinogen alpha chain; 84.6 2.6 9E-05 45.0 8.6 87 289-394 119-205 (562)
2 3twe_A Alpha4H; unknown functi 67.6 6.6 0.00023 25.9 3.7 23 253-275 3-25 (27)
3 3hls_A Guanylate cyclase solub 65.3 2.4 8.3E-05 33.3 1.6 16 389-404 49-64 (66)
4 1deq_A Fibrinogen (alpha chain 53.2 2.1E+02 0.0072 29.6 14.6 42 366-408 181-222 (390)
5 1z23_A CRK-associated substrat 31.5 2.2E+02 0.0076 26.0 8.9 130 137-340 19-160 (163)
6 3f4m_A Tumor necrosis factor, 26.6 2.7E+02 0.0091 25.5 8.5 116 234-377 28-156 (161)
7 3ghg_A Fibrinogen alpha chain; 24.8 6.7E+02 0.023 27.1 12.2 83 216-306 60-150 (562)
8 3onj_A T-snare VTI1; helix, HA 22.7 30 0.001 28.5 1.4 40 387-429 46-93 (97)
9 3pdy_A Plectin; cytoskeleton, 22.5 4E+02 0.014 23.7 8.9 39 232-270 90-128 (210)
10 3mp7_B Preprotein translocase 22.3 25 0.00084 27.4 0.7 32 190-221 2-33 (61)
11 1m1j_A Fibrinogen alpha subuni 20.9 3.6E+02 0.012 28.6 9.2 27 366-393 179-205 (491)
12 1m1j_B Fibrinogen beta chain; 20.2 7.6E+02 0.026 25.8 12.3 16 289-304 144-159 (464)
No 1
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=84.60 E-value=2.6 Score=45.03 Aligned_cols=87 Identities=13% Similarity=0.267 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcchhhhhhhHHH
Q 012795 289 FAILRAELKSQRKQVKILRKKSLWSRSLEEVMEKLVDIVTFLLLEMHDAFGSTDDHFPFKGSMSNHQRLGPAGLALHYAN 368 (456)
Q Consensus 289 l~~lqq~l~~QRk~Vk~LKk~SLWsrt~d~vVekLvriV~~i~~rI~~VFG~~~~~~~~~~~~~~~~TLG~AgLALHYAN 368 (456)
+..|+.+|..|-+.++.|+. ++++.+.++-|-=--|-..|..-.|++.-.... .--| =-|-|
T Consensus 119 IqyLKekVdnQlsnIrvLQs------nLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~------~vd~------~sY~~ 180 (562)
T 3ghg_A 119 IEVLKRKVIEKVQHIQLLQK------NVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAR------EVDL------KDYED 180 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCC------CCCH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhccccccchhee------ecch------HHHHH
Confidence 44555555555555555553 345555444444444455666666765422111 1111 14999
Q ss_pred HHHHHHHHhhcCCCCCCchHHHhhhc
Q 012795 369 IILQIDSLVARSSSMPPSTRDALYQS 394 (456)
Q Consensus 369 IIi~IEklvs~p~~v~~~aRD~LYqm 394 (456)
+=-|+|.+. ...+.|...|..||.|
T Consensus 181 ~QKQLeQv~-a~dL~p~~~~q~Lp~l 205 (562)
T 3ghg_A 181 QQKQLEQVI-AKDLLPSRDRQHLPLI 205 (562)
T ss_dssp HHHHHHHHH-TTCCCCSCCCC-----
T ss_pred HHHHHHHHh-hcccCCccccccchhc
Confidence 999999976 5667788888888876
No 2
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=67.60 E-value=6.6 Score=25.94 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=16.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhh
Q 012795 253 TAELYNELQILDRFEQDCQHKRQ 275 (456)
Q Consensus 253 Ta~LY~ELeaL~~lEq~~rrk~~ 275 (456)
.-+||.|||.|.+-=..+|+|+.
T Consensus 3 adelykeledlqerlrklrkklr 25 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46899999988776666666543
No 3
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=65.30 E-value=2.4 Score=33.29 Aligned_cols=16 Identities=50% Similarity=0.906 Sum_probs=11.3
Q ss_pred HHhhhcCchhHHHHHh
Q 012795 389 DALYQSLPPSIKSALR 404 (456)
Q Consensus 389 D~LYqmLP~sIRsaLR 404 (456)
+=||+|||++|-..|+
T Consensus 49 ~LL~~mLP~~VA~~Lk 64 (66)
T 3hls_A 49 TLLYSVLPPSVANELR 64 (66)
T ss_dssp HHHHHTSCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHh
Confidence 4577777777777665
No 4
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=53.16 E-value=2.1e+02 Score=29.57 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCchHHHhhhcCchhHHHHHhhhcc
Q 012795 366 YANIILQIDSLVARSSSMPPSTRDALYQSLPPSIKSALRSKLQ 408 (456)
Q Consensus 366 YANIIi~IEklvs~p~~v~~~aRD~LYqmLP~sIRsaLRskLr 408 (456)
|=|+-=|+|.+. .-.+.|.-.|-.|+.+=|..++..+..+-|
T Consensus 181 ye~qqKQL~qv~-a~~llP~~~~q~lp~LK~~p~kd~vP~~fK 222 (390)
T 1deq_A 181 YKNQQKQLEQVI-AINLLPSRDIQYLPILKMSTITGPVPREFK 222 (390)
T ss_pred HHHHHHHHHhhh-hhccccccccccccccccccccccCChhhc
Confidence 557767777754 444556555667777777766666555555
No 5
>1z23_A CRK-associated substrate; four-helix bundle, cell adhesion; NMR {Rattus norvegicus}
Probab=31.52 E-value=2.2e+02 Score=26.05 Aligned_cols=130 Identities=20% Similarity=0.201 Sum_probs=67.7
Q ss_pred ehHHHHHHHHHHHHh---------hhcC---ChHHHHHHhhhccCcccchhccccChHHHHHHHHHHHHHHHhHHHhhHh
Q 012795 137 LAFEVANTIVKGSNL---------MLSI---SESSVRQLKEVVLPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVV 204 (456)
Q Consensus 137 LAFEVAntmsK~~~L---------~~SL---Sd~eI~rLr~evL~SeGV~~LVS~D~~~LL~LA~AEk~eeL~~~A~~Va 204 (456)
|==||+..++++..+ ||+. -+.+|..||.-+.+ .-+-+.+|-.||+-+.
T Consensus 19 LQ~~v~~sVs~Ll~fv~s~~~~~~WR~~~~~le~~i~~i~~a~~~-------------------v~~Sl~efL~Farga~ 79 (163)
T 1z23_A 19 LQQGVSTTVAHLLDLVGSASGPGGWRSTSEPQEPPVQDLKAAVAA-------------------VHGAVHELLEFARSAV 79 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCSSCCSSSSCCTTHHHHHHHHHH-------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCcCccCcccccchhHHHHHHHHHH-------------------HHHHHHHHHHHHHHHH
Confidence 334677777777776 7877 34566665554332 1222344555555553
Q ss_pred hhhccCCCccccchhHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCCCCCC
Q 012795 205 RFGNRSKDPQWHNLGRYFEKISRELIPQKQLKQEAELLMEQLMTLVQHTAELYNELQILDRFEQDCQHKRQEEDNPVGSQ 284 (456)
Q Consensus 205 RlG~rC~DP~~h~fdr~F~~l~~~~~~~~~~~k~ae~km~kmerlV~~Ta~LY~ELeaL~~lEq~~rrk~~~~~~~~~~~ 284 (456)
||-|.-+ .+.+..++.+.++ ++......|.+--++|+.-+ +.+
T Consensus 80 --~nA~~~~------------------d~~L~~kl~r~Lq---~l~ds~qiL~~~~~~Ld~~~-------------~~~- 122 (163)
T 1z23_A 80 --SSATHTS------------------DRTLHAKLSRQLQ---KMEDVYQTLVVHGQVLDSGR-------------GGP- 122 (163)
T ss_dssp --TTCCCTT------------------CCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCS-------------SSC-
T ss_pred --hhccccc------------------cchHHHHHHHHHH---HHhhHHHHHHHHHHHHHccC-------------CCC-
Confidence 5655521 2233444444444 34445555555555665333 112
Q ss_pred CCccHHHHHHHHHHHHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHhhCC
Q 012795 285 KGESFAILRAELKSQRKQVKILRKKSLWSRSLEEVMEKLVDIVTFLLLEMHDAFGS 340 (456)
Q Consensus 285 ~g~~l~~lqq~l~~QRk~Vk~LKk~SLWsrt~d~vVekLvriV~~i~~rI~~VFG~ 340 (456)
..+.+.|-+=|+.-|.. - +-..+.+-||+.-+..-|-.
T Consensus 123 -~~~~DdLDrfVmvaR~v--------------p---dD~kqlas~I~~na~lLFkr 160 (163)
T 1z23_A 123 -GFTLDDLDRLVACSRAV--------------P---EDAKQLASFLHGNASLLFRR 160 (163)
T ss_dssp -CCCHHHHHHHHHHHHHH--------------H---HHHHHHHHHHHHHHHHHSCC
T ss_pred -CCCcchHHHHHHhhccC--------------C---HHHHHHHHHHHhhhhheecc
Confidence 22367777777775432 2 22233455667777777743
No 6
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=26.58 E-value=2.7e+02 Score=25.46 Aligned_cols=116 Identities=19% Similarity=0.206 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHhhhcCC------CCCCCCCccHHHHHHHHHHHH
Q 012795 234 QLKQEAELLMEQLMTLVQHTAELYN-------ELQILDRFEQDCQHKRQEEDN------PVGSQKGESFAILRAELKSQR 300 (456)
Q Consensus 234 ~~~k~ae~km~kmerlV~~Ta~LY~-------ELeaL~~lEq~~rrk~~~~~~------~~~~~~g~~l~~lqq~l~~QR 300 (456)
+.+++|++.++.+.+.|-...-||+ ||..+++|-+.+ +.-.. -+...- ....|.+-|..-|
T Consensus 28 ~nkkeA~kv~KniIKi~vKigvl~rn~qf~~eEl~~~~~fr~k~----~~~amt~iSF~eVdfTf--D~~~L~~~L~ec~ 101 (161)
T 3f4m_A 28 HSRPQAQRVIKDLIKVAIKVAVLHRNGSFGPSELALATRFRQKL----RQGAMTALSFGEVDFTF--EAAVLAGLLTECR 101 (161)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH----HHHHHHHHHHTSTTSCC--CHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHhheeeecCCCCHHHHHHHHHHHHHH----HHHHHHHhhhhccCccc--cHHHHHHHHHHHH
Confidence 4579999999999999999999996 555555544444 32111 011111 2344666666555
Q ss_pred HHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcchhhhhhhHHHHHHHHHHHh
Q 012795 301 KQVKILRKKSLWSRSLEEVMEKLVDIVTFLLLEMHDAFGSTDDHFPFKGSMSNHQRLGPAGLALHYANIILQIDSLV 377 (456)
Q Consensus 301 k~Vk~LKk~SLWsrt~d~vVekLvriV~~i~~rI~~VFG~~~~~~~~~~~~~~~~TLG~AgLALHYANIIi~IEklv 377 (456)
+....|=+.-|=-++ +.||..||+-.....-...-..+ -..-|--+|+--+++|+
T Consensus 102 ~lL~~lv~~HLT~KS---------------~~Ri~~vF~~f~~~efL~~lf~~-------~~~~~L~kI~~~Lnkll 156 (161)
T 3f4m_A 102 DVLLELVEHHLTPKS---------------HGRIRHVFDHFSDPGLLTALYGP-------DFTQHLGKICDGLRKLL 156 (161)
T ss_dssp HHHHHHHTTTSCHHH---------------HHHHHHHHHHHTCHHHHHHHTSG-------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCcch---------------HHHHHHHHHHhCCHHHHHHHhCc-------HHHHHHHHHHHHHHHHH
Confidence 555544444333332 57888888633211000000011 34456667777777765
No 7
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=24.76 E-value=6.7e+02 Score=27.06 Aligned_cols=83 Identities=16% Similarity=0.268 Sum_probs=51.7
Q ss_pred cchhHHHHHHhhhcchhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHh-HHHHHHHHHHHHhhhcCCCCCCCCCc
Q 012795 216 HNLGRYFEKISRELIPQKQLKQEAELLMEQLMTLV-------QHTAELYNELQ-ILDRFEQDCQHKRQEEDNPVGSQKGE 287 (456)
Q Consensus 216 h~fdr~F~~l~~~~~~~~~~~k~ae~km~kmerlV-------~~Ta~LY~ELe-aL~~lEq~~rrk~~~~~~~~~~~~g~ 287 (456)
++|....++|...+.+-.+..++++.-++.++.+. ...-.-|.|+- .|.+--+.++++++++- .
T Consensus 60 rDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl--------s 131 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV--------Q 131 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH--------H
T ss_pred CcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH--------H
Confidence 45555566666655555555667766666555443 23334455553 55555555555554432 4
Q ss_pred cHHHHHHHHHHHHHHHHhh
Q 012795 288 SFAILRAELKSQRKQVKIL 306 (456)
Q Consensus 288 ~l~~lqq~l~~QRk~Vk~L 306 (456)
++..||+-|+-||.++++|
T Consensus 132 nIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999988
No 8
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=22.72 E-value=30 Score=28.49 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=27.1
Q ss_pred hHHHhhhc------C--chhHHHHHhhhcccccccchhhHHHHHHHHHHHH
Q 012795 387 TRDALYQS------L--PPSIKSALRSKLQSFHVKEEFTVAQIKDEMEKTL 429 (456)
Q Consensus 387 aRD~LYqm------L--P~sIRsaLRskLr~~~~~de~la~ewk~am~kiL 429 (456)
|.+=|-|| + |++.|+.+.+|||.|-. -+..+++..+.+++
T Consensus 46 A~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~---dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 46 LFDLLDQMDVEVNNSIGDASERATYKAKLREWKK---TIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---HHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhh
Confidence 34445555 6 99999999999999876 23333555555543
No 9
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=22.46 E-value=4e+02 Score=23.66 Aligned_cols=39 Identities=21% Similarity=0.201 Sum_probs=23.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 012795 232 QKQLKQEAELLMEQLMTLVQHTAELYNELQILDRFEQDC 270 (456)
Q Consensus 232 ~~~~~k~ae~km~kmerlV~~Ta~LY~ELeaL~~lEq~~ 270 (456)
+..+.+-++.+.++|+.|-+.-.+...++.=|++-|+.+
T Consensus 90 ~~~L~~~a~~R~~~L~~L~~f~~~~~~~~~Wl~eke~~~ 128 (210)
T 3pdy_A 90 YAKLLNSSKARLRSLESLHSFVAAATKELMWLNEKEEEE 128 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556777788888866555444445555555555544
No 10
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=22.28 E-value=25 Score=27.38 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=23.5
Q ss_pred HHHHHHHhHHHhhHhhhhccCCCccccchhHH
Q 012795 190 ADKRDDLKIFTGEVVRFGNRSKDPQWHNLGRY 221 (456)
Q Consensus 190 AEk~eeL~~~A~~VaRlG~rC~DP~~h~fdr~ 221 (456)
++..|.++.|.++..|+=++|+-|.|..|-.+
T Consensus 2 ~~~~e~~~~f~kd~~rvlk~~~KPd~~Ef~~i 33 (61)
T 3mp7_B 2 AELQERIRHFWKESRRAFLVTKKPNWATYKRA 33 (61)
T ss_dssp ------CTTHHHHHTHHHHHSCCCCTTHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 46678889999999999999999999887654
No 11
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=20.88 E-value=3.6e+02 Score=28.63 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCchHHHhhh
Q 012795 366 YANIILQIDSLVARSSSMPPSTRDALYQ 393 (456)
Q Consensus 366 YANIIi~IEklvs~p~~v~~~aRD~LYq 393 (456)
|-|+==|+|.+. ...+.|...|..|+.
T Consensus 179 Ye~~QKqLeQv~-a~dL~p~~d~q~Lp~ 205 (491)
T 1m1j_A 179 YDNIQKHLTQAS-SIDMHPDFQTTTLST 205 (491)
T ss_dssp THHHHHHHHHHT-TCCCCCSCCCCCCSC
T ss_pred HHHHHHHHHHhh-ccccCCccchhhhhh
Confidence 788888888865 444555544444443
No 12
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=20.20 E-value=7.6e+02 Score=25.84 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 012795 289 FAILRAELKSQRKQVK 304 (456)
Q Consensus 289 l~~lqq~l~~QRk~Vk 304 (456)
+..++.+|..|.+.++
T Consensus 144 ~~~~~~~~e~~~~~i~ 159 (464)
T 1m1j_B 144 LSEYNTEMELHYNYIK 159 (464)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555444
Done!