Query 012795
Match_columns 456
No_of_seqs 117 out of 139
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 16:23:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012795.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012795hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jfia_ a.22.1.3 (A:) Negative 29.5 40 0.0029 23.9 5.0 50 161-211 6-55 (66)
2 d1vcsa1 a.47.2.1 (A:8-96) Vesi 28.4 17 0.0012 27.9 2.9 20 393-412 55-74 (89)
3 d1a5ta1 a.80.1.1 (A:208-330) d 23.4 9.8 0.00071 31.0 0.6 30 423-455 32-61 (123)
4 d2pjqa1 a.211.1.1 (A:1-215) Un 21.1 48 0.0035 28.4 4.8 66 186-251 118-206 (215)
5 d1r6ta1 a.16.1.3 (A:7-60) N-te 19.8 64 0.0047 22.9 4.3 48 288-339 2-49 (54)
6 d2bdea1 c.108.1.23 (A:2-459) C 19.5 58 0.0042 31.6 5.4 35 237-271 324-358 (458)
7 d1ugoa_ a.7.7.1 (A:) BAG-famil 18.7 1.3E+02 0.0094 23.2 6.5 36 188-223 19-54 (99)
8 d1ku5a_ a.22.1.2 (A:) Archaeal 17.6 51 0.0037 23.1 3.4 43 168-211 12-54 (66)
9 d2o3fa1 a.4.1.20 (A:1-83) Puta 15.7 45 0.0033 24.7 2.8 65 144-219 5-69 (83)
10 d1zaka1 c.37.1.1 (A:3-127,A:15 15.6 1.5E+02 0.011 23.2 6.4 49 290-338 131-186 (189)
No 1
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.50 E-value=40 Score=23.86 Aligned_cols=50 Identities=10% Similarity=0.058 Sum_probs=37.1
Q ss_pred HHHhhhccCcccchhccccChHHHHHHHHHHHHHHHhHHHhhHhhhhccCC
Q 012795 161 RQLKEVVLPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVVRFGNRSK 211 (456)
Q Consensus 161 ~rLr~evL~SeGV~~LVS~D~~~LL~LA~AEk~eeL~~~A~~VaRlG~rC~ 211 (456)
.|.|. |+++..=-..||.|--+++.-|+-....+|-.-|..+++-.+|..
T Consensus 6 srVkk-imk~~~~~~~is~~A~~~~~~a~E~Fi~~l~~~A~~~a~~~krkt 55 (66)
T d1jfia_ 6 ARIKK-IMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKT 55 (66)
T ss_dssp HHHHH-HHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---C
T ss_pred HHHHH-HHhcCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 34444 444333335899999999999999999999999999998877654
No 2
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.38 E-value=17 Score=27.89 Aligned_cols=20 Identities=15% Similarity=0.577 Sum_probs=17.4
Q ss_pred hcCchhHHHHHhhhcccccc
Q 012795 393 QSLPPSIKSALRSKLQSFHV 412 (456)
Q Consensus 393 qmLP~sIRsaLRskLr~~~~ 412 (456)
+.+|++.|+.+.+|||.|-.
T Consensus 55 r~~p~s~R~~~~~klr~Yk~ 74 (89)
T d1vcsa1 55 REIPPQSRGMYSNRMRSYKQ 74 (89)
T ss_dssp TTSCTTTHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHH
Confidence 35899999999999998754
No 3
>d1a5ta1 a.80.1.1 (A:208-330) delta prime subunit {Escherichia coli [TaxId: 562]}
Probab=23.43 E-value=9.8 Score=30.98 Aligned_cols=30 Identities=27% Similarity=0.622 Sum_probs=20.0
Q ss_pred HHHHHHHhhHhhhhhhhhhhhccCCccchhccc
Q 012795 423 DEMEKTLQWLVPIATNTAKAHHGFGWVGEWANL 455 (456)
Q Consensus 423 ~am~kiL~WLaPmAhNTirwh~gfgwvgewa~~ 455 (456)
+.....|.||.=+-.+.+|||+| +++|.|.
T Consensus 32 e~~~~~L~WL~~lL~DalK~q~g---~~~~vN~ 61 (123)
T d1a5ta1 32 EQAPARLHWLATLLMDALKRHHG---AAQVTNV 61 (123)
T ss_dssp TTHHHHHHHHHHHHHHHTCC---------CCCT
T ss_pred ccHHHHHHHHHHHHHHHHHHhcC---chhhccH
Confidence 34568899999999999999987 4467663
No 4
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]}
Probab=21.10 E-value=48 Score=28.35 Aligned_cols=66 Identities=18% Similarity=0.285 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhH--HHhhHhhh---hccCCCcccc----------------chhHHHHHHhh--hcchhhhhHHHHHHH
Q 012795 186 KIFAADKRDDLKI--FTGEVVRF---GNRSKDPQWH----------------NLGRYFEKISR--ELIPQKQLKQEAELL 242 (456)
Q Consensus 186 ~LA~AEk~eeL~~--~A~~VaRl---G~rC~DP~~h----------------~fdr~F~~l~~--~~~~~~~~~k~ae~k 242 (456)
-+--||+++.|-. +|+..+-- |+.=.||... .++|+|++|.. +..--..-++.|+.+
T Consensus 118 Iv~DADrLDalGaiGIaR~f~y~g~~g~~~~~p~~~~~~~~~~~~~~~~~~~~i~Hf~eKLl~l~~~m~T~~gk~lA~~R 197 (215)
T d2pjqa1 118 VVQDADRLDAIGAIGIARALYYSGHVGEKIYDPAIAPREHMTREQYRHQPGTAINHFYEKLFKLAALMNTDTAKALAAHR 197 (215)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHHTCCSCCTTSCCCSSCCHHHHHHSCCCTTHHHHHTGGGHHHHCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHhCCcccCcccccccccchhhhhcCCccHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4567899998876 56665533 3334565432 48899988865 222122335678888
Q ss_pred HHHHHHHHH
Q 012795 243 MEQLMTLVQ 251 (456)
Q Consensus 243 m~kmerlV~ 251 (456)
.+-|+.|++
T Consensus 198 ~~~m~~Fl~ 206 (215)
T d2pjqa1 198 TAVMHEFVD 206 (215)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877774
No 5
>d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.80 E-value=64 Score=22.90 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHHHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHhhC
Q 012795 288 SFAILRAELKSQRKQVKILRKKSLWSRSLEEVMEKLVDIVTFLLLEMHDAFG 339 (456)
Q Consensus 288 ~l~~lqq~l~~QRk~Vk~LKk~SLWsrt~d~vVekLvriV~~i~~rI~~VFG 339 (456)
++.+|.++|..|=-.||.||..--=....|..|.+| .-+=+..+.+.|
T Consensus 2 S~~eL~~~I~~QGd~VR~LKa~ka~K~~id~aV~~L----L~LK~~yk~~tG 49 (54)
T d1r6ta1 2 SLLELFNSIATQGELVRSLKAGNASKDEIDSAVKML----VSLKMSYKAAAG 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH----HHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHH----HHHHHHHHHhhC
Confidence 467899999999999999997543333444445544 334455555555
No 6
>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific 5'-nucleotidase {Legionella pneumophila [TaxId: 446]}
Probab=19.48 E-value=58 Score=31.64 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 012795 237 QEAELLMEQLMTLVQHTAELYNELQILDRFEQDCQ 271 (456)
Q Consensus 237 k~ae~km~kmerlV~~Ta~LY~ELeaL~~lEq~~r 271 (456)
+|.+..++...+-......|-.-+..+.+++|.+.
T Consensus 324 ~ELe~Ei~~~~~~~~~~~~l~~l~~~~~~l~~~~~ 358 (458)
T d2bdea1 324 EELGEEIASQIRALPIEKKIGEAMAIKKELEQKYV 358 (458)
T ss_dssp TTHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 45555555443333333333222333445566554
No 7
>d1ugoa_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-5, BAG-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.75 E-value=1.3e+02 Score=23.22 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=27.4
Q ss_pred HHHHHHHHHhHHHhhHhhhhccCCCccccchhHHHH
Q 012795 188 FAADKRDDLKIFTGEVVRFGNRSKDPQWHNLGRYFE 223 (456)
Q Consensus 188 A~AEk~eeL~~~A~~VaRlG~rC~DP~~h~fdr~F~ 223 (456)
+..+..++++.+...|..|...|.|.....|+....
T Consensus 19 ~I~~i~~ev~~L~~~V~~f~~~~~dke~~~L~E~L~ 54 (99)
T d1ugoa_ 19 RLQEIQREVKAIEPQVVGFSGLSDDKNYKRLERILT 54 (99)
T ss_dssp HHHHHHHHHHHSHHHHHTCCCCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 346778888899999999999999876655555433
No 8
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}
Probab=17.57 E-value=51 Score=23.13 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=36.4
Q ss_pred cCcccchhccccChHHHHHHHHHHHHHHHhHHHhhHhhhhccCC
Q 012795 168 LPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVVRFGNRSK 211 (456)
Q Consensus 168 L~SeGV~~LVS~D~~~LL~LA~AEk~eeL~~~A~~VaRlG~rC~ 211 (456)
++..|+. -||.|--+++.-||-+..+.|-.-|..++.-++|..
T Consensus 12 ~k~~~~~-ris~ea~~~l~~a~e~Fi~~l~~~a~~~a~~~~RKT 54 (66)
T d1ku5a_ 12 IRKAGAE-RVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKT 54 (66)
T ss_dssp HHHTTCS-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSE
T ss_pred HHhCccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4445665 489999999999999999999999999998877764
No 9
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=15.74 E-value=45 Score=24.73 Aligned_cols=65 Identities=6% Similarity=0.047 Sum_probs=50.8
Q ss_pred HHHHHHHhhhcCChHHHHHHhhhccCcccchhccccChHHHHHHHHHHHHHHHhHHHhhHhhhhccCCCccccchh
Q 012795 144 TIVKGSNLMLSISESSVRQLKEVVLPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVVRFGNRSKDPQWHNLG 219 (456)
Q Consensus 144 tmsK~~~L~~SLSd~eI~rLr~evL~SeGV~~LVS~D~~~LL~LA~AEk~eeL~~~A~~VaRlG~rC~DP~~h~fd 219 (456)
.|.++-..+.+||..|-. |-+-|-++.+.+..+-..|..+...+--.+|.||.+++.=..|..|-
T Consensus 5 ~l~~i~~~~~~Ls~~e~~-----------ia~yil~~~~~~~~~si~~lA~~~~vS~sTi~Rf~kklG~~gf~e~k 69 (83)
T d2o3fa1 5 GLAIIQSMKHKLPPSERK-----------LADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSLGLKGFQDLK 69 (83)
T ss_dssp HHHHHHHHGGGSCHHHHH-----------HHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHhhCCHHHHH-----------HHHHHHcCHHHHHHccHHHHHHHHCCCHHHHHHHHHHhCCCCHHHHH
Confidence 466777778888887653 44567788889999999999999999999999999999854444333
No 10
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}
Probab=15.61 E-value=1.5e+02 Score=23.23 Aligned_cols=49 Identities=10% Similarity=0.267 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHhhhh--cccc-----cccHHHHHHHHHHHHHHHHHHHHHhh
Q 012795 290 AILRAELKSQRKQVKILRK--KSLW-----SRSLEEVMEKLVDIVTFLLLEMHDAF 338 (456)
Q Consensus 290 ~~lqq~l~~QRk~Vk~LKk--~SLW-----srt~d~vVekLvriV~~i~~rI~~VF 338 (456)
+.+++++...+++++.|.+ ...| +++.|+|.+.+..++-.|+.+....+
T Consensus 131 e~~~~rl~~y~~~~~~l~~~y~~~~~~Id~~~~idev~~~I~~~l~~il~~~~~~~ 186 (189)
T d1zaka1 131 EKVKLRLETYYQNIESLLSTYENIIVKVQGDATVDAVFAKIDELLGSILEKKNEMV 186 (189)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCCCEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHHHhhhhhhhc
Confidence 4567778888888777755 3566 68999999999999988888877765
Done!