Query 012798
Match_columns 456
No_of_seqs 312 out of 2067
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 16:26:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012798.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012798hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2o1ra1 d.145.1.4 (A:1-78) Hyp 9.0 68 0.005 22.2 1.9 25 124-148 16-48 (78)
2 d2rk5a1 d.145.1.4 (A:5-88) Put 8.8 74 0.0054 22.2 2.0 16 133-148 33-48 (84)
3 d1xrda1 f.3.1.1 (A:1-52) Light 8.4 54 0.0039 21.4 0.9 21 407-427 23-43 (52)
4 d2oara1 f.16.1.1 (A:10-118) Ga 8.1 74 0.0054 24.0 1.8 31 356-386 1-37 (109)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 8.0 5.6E+02 0.041 21.5 21.6 21 322-342 274-294 (447)
6 d2p3ha1 d.145.1.4 (A:5-102) Un 7.6 89 0.0065 22.8 2.0 16 133-148 36-51 (98)
7 d2plia1 d.145.1.4 (A:5-88) Unc 6.9 1E+02 0.0075 21.6 2.0 16 133-148 38-53 (84)
8 d2nqwa1 d.145.1.4 (A:4-90) Hyp 6.9 1E+02 0.0073 21.7 2.0 16 133-148 41-56 (87)
9 d2r2za1 d.145.1.4 (A:5-88) Put 6.9 1E+02 0.0075 21.5 2.0 17 133-149 36-52 (84)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 6.4 2.7E+02 0.02 16.3 3.7 25 196-220 8-32 (37)
No 1
>d2o1ra1 d.145.1.4 (A:1-78) Hypothetical protein HI0107 {Haemophilus influenzae [TaxId: 727]}
Probab=9.02 E-value=68 Score=22.22 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=19.2
Q ss_pred HHHHHHHhc--------chhHHHHHHHhhchhH
Q 012798 124 TEQLTFFTG--------ATVGGLLNATFGNATE 148 (456)
Q Consensus 124 ~e~la~~~g--------~~vgGll~at~Gn~pE 148 (456)
.+++.+.+| +|+||++.--+|..|+
T Consensus 16 l~dl~~~l~~~l~~~~~~Ti~G~v~~~lg~iP~ 48 (78)
T d2o1ra1 16 LRDLNKMFNWELDTEDARTFNGLILEHLEEIPD 48 (78)
T ss_dssp HHHHHHHHCCCCCCSSCSBHHHHHHHHCSSCCC
T ss_pred HHHHHHHHCCCCCCccchHHHHHHHHHhCcCCC
Confidence 355555553 6999999999998886
No 2
>d2rk5a1 d.145.1.4 (A:5-88) Putative hemolysin SMU1693 {Streptococcus mutans [TaxId: 1309]}
Probab=8.77 E-value=74 Score=22.23 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=14.5
Q ss_pred chhHHHHHHHhhchhH
Q 012798 133 ATVGGLLNATFGNATE 148 (456)
Q Consensus 133 ~~vgGll~at~Gn~pE 148 (456)
+|+||++.--+|..|+
T Consensus 33 dTlgG~v~~~lg~iP~ 48 (84)
T d2rk5a1 33 DTIAGFYLTGVGTIPS 48 (84)
T ss_dssp CBHHHHHHHHHCSCCC
T ss_pred hhHHHHHHHHhCcCCC
Confidence 6999999999998886
No 3
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=8.39 E-value=54 Score=21.43 Aligned_cols=21 Identities=14% Similarity=0.444 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhCCccchHHH
Q 012798 407 FITVIVVAFFLQEGTSNYFKG 427 (456)
Q Consensus 407 ~lsvll~~~~~~~g~~~~~~G 427 (456)
.+++++-..++...|.||+||
T Consensus 23 ~LAl~IHfiLLSt~rfNWleg 43 (52)
T d1xrda1 23 VLALLIHFILLSTERFNWLEG 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccCccccccC
Confidence 445555555567778999987
No 4
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=8.10 E-value=74 Score=23.98 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=20.5
Q ss_pred HHhCCccchHHHhhhHHHH------HHHHHHHHHHHH
Q 012798 356 AMKDKLDISLGVAIGSSTQ------ISMFGIPFCVVI 386 (456)
Q Consensus 356 a~kg~~dlaig~~iGS~i~------~~l~v~p~~vli 386 (456)
||-|-+|+|+|.++|+... .--++.|+...+
T Consensus 1 arGNVidLAVgvIiG~AF~~iV~slV~diimPlIg~i 37 (109)
T d2oara1 1 ARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLINRI 37 (109)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhhc
Confidence 3445579999999998752 222567776554
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=7.96 E-value=5.6e+02 Score=21.46 Aligned_cols=21 Identities=5% Similarity=-0.175 Sum_probs=13.2
Q ss_pred HHHhhccCCCchhhhHhHHHH
Q 012798 322 EGASASWNIPISFISVILLPI 342 (456)
Q Consensus 322 ~~i~~~~gis~~fiGlillpi 342 (456)
..+.+..|.+....|......
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~ 294 (447)
T d1pw4a_ 274 TYLKEVKHFALDKSSWAYFLY 294 (447)
T ss_dssp HHBTTBSCCCHHHHHHHHHHH
T ss_pred hhcccccccccchhhhhhhcc
Confidence 345566788887777655433
No 6
>d2p3ha1 d.145.1.4 (A:5-102) Uncharacterized protein Cgl1194/Cg1349 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=7.55 E-value=89 Score=22.79 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=14.7
Q ss_pred chhHHHHHHHhhchhH
Q 012798 133 ATVGGLLNATFGNATE 148 (456)
Q Consensus 133 ~~vgGll~at~Gn~pE 148 (456)
+|+||++..-+|..|+
T Consensus 36 ~Tl~G~~~~~lg~iP~ 51 (98)
T d2p3ha1 36 ETISGLLFDHANALLK 51 (98)
T ss_dssp CBHHHHHHHHHCSCCC
T ss_pred cCHHHHHHHHHCcCCC
Confidence 7999999999999987
No 7
>d2plia1 d.145.1.4 (A:5-88) Uncharacterized protein NMB0537 {Neisseria meningitidis [TaxId: 487]}
Probab=6.94 E-value=1e+02 Score=21.61 Aligned_cols=16 Identities=31% Similarity=0.584 Sum_probs=14.4
Q ss_pred chhHHHHHHHhhchhH
Q 012798 133 ATVGGLLNATFGNATE 148 (456)
Q Consensus 133 ~~vgGll~at~Gn~pE 148 (456)
+|+||++.--+|..|+
T Consensus 38 ~TigG~i~~~l~~iP~ 53 (84)
T d2plia1 38 DTIGGLVIQELGHLPV 53 (84)
T ss_dssp CBHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHhCcccc
Confidence 6999999999998886
No 8
>d2nqwa1 d.145.1.4 (A:4-90) Hypothetical protein PG0272 {Porphyromonas gingivalis [TaxId: 837]}
Probab=6.92 E-value=1e+02 Score=21.68 Aligned_cols=16 Identities=19% Similarity=0.196 Sum_probs=14.4
Q ss_pred chhHHHHHHHhhchhH
Q 012798 133 ATVGGLLNATFGNATE 148 (456)
Q Consensus 133 ~~vgGll~at~Gn~pE 148 (456)
+|+||++.--+|..|+
T Consensus 41 ~Ti~G~i~~~lg~iP~ 56 (87)
T d2nqwa1 41 DTLSGLFLEIKQELPH 56 (87)
T ss_dssp SBHHHHHHHHHCSCCC
T ss_pred eeHHHHHHHHhCcccc
Confidence 6999999999998887
No 9
>d2r2za1 d.145.1.4 (A:5-88) Putative hemolysin EF0700 {Enterococcus faecalis [TaxId: 1351]}
Probab=6.87 E-value=1e+02 Score=21.52 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=14.7
Q ss_pred chhHHHHHHHhhchhHH
Q 012798 133 ATVGGLLNATFGNATEL 149 (456)
Q Consensus 133 ~~vgGll~at~Gn~pEL 149 (456)
+|+||++.--+|..|+.
T Consensus 36 ~TigG~i~~~lg~iP~~ 52 (84)
T d2r2za1 36 DTMAGYLITALGTIPDE 52 (84)
T ss_dssp CBHHHHHHHHHSSCCCT
T ss_pred hhHHHHHHHHhCcCCCC
Confidence 69999999889988873
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.37 E-value=2.7e+02 Score=16.33 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=13.9
Q ss_pred eEeehhhhHHHHHHHHHHHHHHHHH
Q 012798 196 QVFNKASAVVNSGLLLMAVMGLVFP 220 (456)
Q Consensus 196 q~f~~~~a~~~s~lllla~~~lllp 220 (456)
|...-..++.+-+++++.+++.++.
T Consensus 8 q~veLNrtsLy~GlLlifvl~vLFs 32 (37)
T d2axtl1 8 QPVELNRTSLYLGLLLILVLALLFS 32 (37)
T ss_dssp CCBCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhhHHHHHHHHHHHHHHHH
Confidence 4333334455666777766665554
Done!