BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012799
(456 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 167/315 (53%), Gaps = 19/315 (6%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
T+ GH+ +V VAF PDG+ +AS S D TV+LW+ N Q + TGH + V +A+S DG
Sbjct: 257 TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDG 315
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
+ + S S ++ W+ + G+ L+GH + G+++ P + SAS D
Sbjct: 316 QTIASASDDKTVKLWN-RNGQHL-QTLTGHSSSVWGVAFSP-----DGQTIASASDDKTV 368
Query: 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHG 281
++W+ + + + L+GH+ +V V + DG I + S D T+K+W G+L++ L GH
Sbjct: 369 KLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS 426
Query: 282 HWVNSLALS-TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----PERLVSGS 336
V +A S + + + + D T K ++ ++ + + ++G A + + S S
Sbjct: 427 SSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 486
Query: 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396
DD T+ LW + Q +TGH V V FSPDGQ +ASAS DK++KLWN G+ +
Sbjct: 487 DDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQ 543
Query: 397 VFRGHVGPVYQIRFE 411
GH V+ + F
Sbjct: 544 TLTGHSSSVWGVAFS 558
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 113/382 (29%), Positives = 189/382 (49%), Gaps = 37/382 (9%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++ NR A H+ +V VAFSPDG+ +AS S D TV+LW+ N Q + TGH + V
Sbjct: 6 VKERNRLEA----HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSV 60
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+A+S DG+ + S S ++ W+ + G+ L+GH + G+++ P +
Sbjct: 61 WGVAFSPDGQTIASASDDKTVKLWN-RNGQLL-QTLTGHSSSVRGVAFSP-----DGQTI 113
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
SAS D ++W+ + + + L+GH+ +V V + DG I + S D T+K+W G+
Sbjct: 114 ASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQ 171
Query: 273 LIRELKGHGHWVNSLALSTE-YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA--- 328
L++ L GH V +A S + + + + D T K ++ ++ + + ++G A
Sbjct: 172 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP 231
Query: 329 -PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
+ + S SDD T+ LW + Q +TGH VN V F PDGQ +ASAS DK++KLW
Sbjct: 232 DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW 289
Query: 388 NGTTGKFVAVFRGHVGPVYQIRFE--------------LIYCFRYPSNFYCVVDMSCCMS 433
N G+ + GH V+ + F + R + + S +
Sbjct: 290 N-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVW 348
Query: 434 LYSWSADSRLLLSGSKDSTLKV 455
++S D + + S S D T+K+
Sbjct: 349 GVAFSPDGQTIASASDDKTVKL 370
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 112/373 (30%), Positives = 185/373 (49%), Gaps = 33/373 (8%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
T+ GH+ +V VAFSPDG+ +AS S D TV+LW+ N Q + TGH + V +A+S DG
Sbjct: 52 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDG 110
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
+ + S S ++ W+ + G+ L+GH + G+++ P + SAS D
Sbjct: 111 QTIASASDDKTVKLWN-RNGQLL-QTLTGHSSSVWGVAFSP-----DGQTIASASDDKTV 163
Query: 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHG 281
++W+ + + + L+GH+ +V V + DG I + S D T+K+W G+L++ L GH
Sbjct: 164 KLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS 221
Query: 282 HWVNSLALSTE-YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----PERLVSGS 336
V +A S + + + + D T K ++ ++ + + + G A + + S S
Sbjct: 222 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASAS 281
Query: 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396
DD T+ LW + Q +TGH V V FSPDGQ +ASAS DK++KLWN G+ +
Sbjct: 282 DDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQ 338
Query: 397 VFRGHVGPVYQIRFE--------------LIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
GH V+ + F + R + S + ++S D +
Sbjct: 339 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQ 398
Query: 443 LLLSGSKDSTLKV 455
+ S S D T+K+
Sbjct: 399 TIASASDDKTVKL 411
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 112/373 (30%), Positives = 184/373 (49%), Gaps = 33/373 (8%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
T+ GH+ +V VAFSPDG+ +AS S D TV+LW+ N Q + TGH + V +A+S DG
Sbjct: 134 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDG 192
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
+ + S S ++ W+ + G+ L+GH + G+++ P + SAS D
Sbjct: 193 QTIASASDDKTVKLWN-RNGQLL-QTLTGHSSSVRGVAFSP-----DGQTIASASDDKTV 245
Query: 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHG 281
++W+ + + + L+GH+ +V V + DG I + S D T+K+W G+L++ L GH
Sbjct: 246 KLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS 303
Query: 282 HWVNSLALSTE-YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----PERLVSGS 336
V +A S + + + + D T K ++ + + + + G A + + S S
Sbjct: 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASAS 363
Query: 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396
DD T+ LW + Q +TGH V V FSPDGQ +ASAS DK++KLWN G+ +
Sbjct: 364 DDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQ 420
Query: 397 VFRGHVGPVYQIRFE--------------LIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
GH V+ + F + R + S + ++S D +
Sbjct: 421 TLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQ 480
Query: 443 LLLSGSKDSTLKV 455
+ S S D T+K+
Sbjct: 481 TIASASDDKTVKL 493
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 165/315 (52%), Gaps = 19/315 (6%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
T+ GH+ +V VAFSPDG+ +AS S D TV+LW+ N Q + TGH + V +A+ DG
Sbjct: 216 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVNGVAFRPDG 274
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
+ + S S ++ W+ + G+ L+GH + G+++ P + SAS D
Sbjct: 275 QTIASASDDKTVKLWN-RNGQLL-QTLTGHSSSVWGVAFSP-----DGQTIASASDDKTV 327
Query: 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHG 281
++W+ + + + L+GH+ +V V + DG I + S D T+K+W G+L++ L GH
Sbjct: 328 KLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS 385
Query: 282 HWVNSLALSTE-YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----PERLVSGS 336
V +A S + + + + D T K ++ ++ + + + G A + + S S
Sbjct: 386 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASAS 445
Query: 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396
DD T+ LW + Q +TGH V V FSPDGQ +ASAS DK++KLWN G+ +
Sbjct: 446 DDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQ 502
Query: 397 VFRGHVGPVYQIRFE 411
GH V + F
Sbjct: 503 TLTGHSSSVRGVAFS 517
Score = 131 bits (329), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 158/292 (54%), Gaps = 18/292 (6%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
T+ GH+ +V VAFSPDG+ +AS S D TV+LW+ N Q + TGH + V +A+S DG
Sbjct: 298 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDG 356
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
+ + S S ++ W+ + G+ L+GH + G+++ P + SAS D
Sbjct: 357 QTIASASDDKTVKLWN-RNGQLL-QTLTGHSSSVRGVAFSP-----DGQTIASASDDKTV 409
Query: 223 RIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVWETTQGKLIRELKGHG 281
++W+ + + + L+GH+ +V V + D I + S D T+K+W G+L++ L GH
Sbjct: 410 KLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHS 467
Query: 282 HWVNSLALSTE-YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----PERLVSGS 336
V +A S + + + + D T K ++ ++ + + ++G A + + S S
Sbjct: 468 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 527
Query: 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
DD T+ LW + Q +TGH V V FSPDGQ +ASAS DK++KLWN
Sbjct: 528 DDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 26 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 85
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 86 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 139
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 140 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 199
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 200 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 259
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 260 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 315
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 316 LENDKTIKLW 325
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 34 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 90
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 91 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 147
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 148 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 180
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 181 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 231
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
++KLW+ + GK + + GH Y I
Sbjct: 232 TLKLWDYSKGKCLKTYTGHKNEKYCI 257
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 38/177 (21%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
L+GHT AV+ VK+ +G + + S D IK+W GK + + GH ++ +A S++
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
L LVS SDD T+ +W+ + K KT
Sbjct: 96 L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 119
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
+ GH V F+P + S SFD+S+++W+ TGK + H PV + F
Sbjct: 120 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 175
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + +
Sbjct: 33 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 88
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
+WS+DS LL+S S D TLK+
Sbjct: 89 -----------------------AWSSDSNLLVSASDDKTLKI 108
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 5 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 64
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 65 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 118
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 119 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 178
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 179 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 238
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 239 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 294
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 295 LENDKTIKLW 304
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 13 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 69
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 70 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 126
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 127 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 159
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 160 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 210
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
++KLW+ + GK + + GH Y I
Sbjct: 211 TLKLWDYSKGKCLKTYTGHKNEKYCI 236
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 38/177 (21%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
L+GHT AV+ VK+ +G + + S D IK+W GK + + GH ++ +A S++
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
L LVS SDD T+ +W+ + K KT
Sbjct: 75 L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 98
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
+ GH V F+P + S SFD+S+++W+ TGK + H PV + F
Sbjct: 99 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 154
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + +
Sbjct: 12 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 67
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
+WS+DS LL+S S D TLK+
Sbjct: 68 -----------------------AWSSDSNLLVSASDDKTLKI 87
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 128
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 249 NFSVTGG---KWIVSGSEDNLVYIWN-LQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 305 LENDKTIKLW 314
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 79
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 80 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 169
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 170 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
++KLW+ + GK + + GH Y I
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCI 246
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 38/177 (21%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
L+GHT AV+ VK+ +G + + S D IK+W GK + + GH ++ +A S++
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
L LVS SDD T+ +W+ + K KT
Sbjct: 85 L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 108
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
+ GH V F+P + S SFD+S+++W+ TGK + H PV + F
Sbjct: 109 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + +
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 77
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
+WS+DS LL+S S D TLK+
Sbjct: 78 -----------------------AWSSDSNLLVSASDDKTLKI 97
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 145/316 (45%), Gaps = 26/316 (8%)
Query: 88 PQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT 147
P ++P T+AGHT+AV SV FSP+G LAS S D +++W +
Sbjct: 2 PLGSTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 61
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207
GHK + +AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 62 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP---- 116
Query: 208 APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW 266
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W
Sbjct: 117 -QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175
Query: 267 ETTQGKLIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM 313
+T G+ ++ L +G ++ + L L + K Y+ +
Sbjct: 176 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 235
Query: 314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ 373
K ++ G + +VSGS+D +++W +K+ ++ GH +V P
Sbjct: 236 KYCIFANFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTEN 291
Query: 374 WVASASF--DKSIKLW 387
+ASA+ DK+IKLW
Sbjct: 292 IIASAALENDKTIKLW 307
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 16 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 72
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 73 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 129
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 130 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 162
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 163 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 213
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
++KLW+ + GK + + GH Y I
Sbjct: 214 TLKLWDYSKGKCLKTYTGHKNEKYCI 239
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 38/177 (21%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
L+GHT AV+ VK+ +G + + S D IK+W GK + + GH ++ +A S++
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
L LVS SDD T+ +W+ + K KT
Sbjct: 78 L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 101
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
+ GH V F+P + S SFD+S+++W+ TGK + H PV + F
Sbjct: 102 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 157
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + +
Sbjct: 15 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 70
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
+WS+DS LL+S S D TLK+
Sbjct: 71 -----------------------AWSSDSNLLVSASDDKTLKI 90
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 128
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 249 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 305 LENDKTIKLW 314
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 79
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 80 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 169
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 170 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
++KLW+ + GK + + GH Y I
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCI 246
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 38/177 (21%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
L+GHT AV+ VK+ +G + + S D IK+W GK + + GH ++ +A S++
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
L LVS SDD T+ +W+ + K KT
Sbjct: 85 L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 108
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
+ GH V F+P + S SFD+S+++W+ TGK + H PV + F
Sbjct: 109 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + +
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 77
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
+WS+DS LL+S S D TLK+
Sbjct: 78 -----------------------AWSSDSNLLVSASDDKTLKI 97
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 9 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 68
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 122
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 243 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 299 LENDKTIKLW 308
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 73
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 74 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 163
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 164 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
++KLW+ + GK + + GH Y I
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCI 240
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 38/177 (21%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
L+GHT AV+ VK+ +G + + S D IK+W GK + + GH ++ +A S++
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
L LVS SDD T+ +W+ + K KT
Sbjct: 79 L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 102
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
+ GH V F+P + S SFD+S+++W+ TGK + H PV + F
Sbjct: 103 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + +
Sbjct: 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 71
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
+WS+DS LL+S S D TLK+
Sbjct: 72 -----------------------AWSSDSNLLVSASDDKTLKI 91
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 10 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 69
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 70 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 123
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 124 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 183
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 184 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 243
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 244 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 299
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 300 LENDKTIKLW 309
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 18 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 74
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 75 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 131
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 132 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 164
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 165 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 215
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
++KLW+ + GK + + GH Y I
Sbjct: 216 TLKLWDYSKGKCLKTYTGHKNEKYCI 241
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 38/177 (21%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
L+GHT AV+ VK+ +G + + S D IK+W GK + + GH ++ +A S++
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
L LVS SDD T+ +W+ + K KT
Sbjct: 80 L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 103
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
+ GH V F+P + S SFD+S+++W+ TGK + H PV + F
Sbjct: 104 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 159
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + +
Sbjct: 17 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 72
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
+WS+DS LL+S S D TLK+
Sbjct: 73 -----------------------AWSSDSNLLVSASDDKTLKI 92
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 9 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 68
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 122
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 243 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 299 LENDKTIKLW 308
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 73
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 74 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 163
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 164 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
++KLW+ + GK + + GH Y I
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCI 240
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 38/177 (21%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
L+GHT AV+ VK+ +G + + S D IK+W GK + + GH ++ +A S++
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
L LVS SDD T+ +W+ + K KT
Sbjct: 79 L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 102
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
+ GH V F+P + S SFD+S+++W+ TGK + H PV + F
Sbjct: 103 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + +
Sbjct: 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 71
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
+WS+DS LL+S S D TLK+
Sbjct: 72 -----------------------AWSSDSNLLVSASDDKTLKI 91
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 31 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 90
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 91 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 144
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 204
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 205 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 264
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 265 NFSVTGG---KWIVSGSEDNLVYIWN-LQTKEIVQKLQGHTDVVISTACHPTENIIASAA 320
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 321 LENDKTIKLW 330
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 39 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 95
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 96 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 152
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 185
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 186 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 236
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
++KLW+ + GK + + GH Y I
Sbjct: 237 TLKLWDYSKGKCLKTYTGHKNEKYCI 262
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 103/237 (43%), Gaps = 54/237 (22%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
L+GHT AV+ VK+ +G + + S D IK+W GK + + GH ++ +A S++
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
L LVS SDD T+ +W+ + K KT
Sbjct: 101 L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 124
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE--- 411
+ GH V F+P + S SFD+S+++W+ TGK + H PV + F
Sbjct: 125 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 183
Query: 412 -LIYCFRYP--------SNFYC----VVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
LI Y ++ C + D + +S +S + + +L+ + D+TLK+
Sbjct: 184 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 240
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + +
Sbjct: 38 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 93
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
+WS+DS LL+S S D TLK+
Sbjct: 94 -----------------------AWSSDSNLLVSASDDKTLKI 113
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 14 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 73
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 74 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 127
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 128 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 187
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 188 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 247
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 248 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 303
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 304 LENDKTIKLW 313
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 22 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 78
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 79 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 135
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 136 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 168
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 169 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 219
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
++KLW+ + GK + + GH Y I
Sbjct: 220 TLKLWDYSKGKCLKTYTGHKNEKYCI 245
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 38/177 (21%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
L+GHT AV+ VK+ +G + + S D IK+W GK + + GH ++ +A S++
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
L LVS SDD T+ +W+ + K KT
Sbjct: 84 L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 107
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
+ GH V F+P + S SFD+S+++W+ TGK + H PV + F
Sbjct: 108 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 163
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + +
Sbjct: 21 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 76
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
+WS+DS LL+S S D TLK+
Sbjct: 77 -----------------------AWSSDSNLLVSASDDKTLKI 96
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 128
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 249 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 305 LENDKTIKLW 314
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 79
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 80 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 169
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 170 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
++KLW+ + GK + + GH Y I
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCI 246
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 38/177 (21%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
L+GHT AV+ VK+ +G + + S D IK+W GK + + GH ++ +A S++
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
L LVS SDD T+ +W+ + K KT
Sbjct: 85 L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 108
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
+ GH V F+P + S SFD+S+++W+ TGK + H PV + F
Sbjct: 109 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + +
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 77
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
+WS+DS LL+S S D TLK+
Sbjct: 78 -----------------------AWSSDSNLLVSASDDKTLKI 97
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 33 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 92
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 93 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 146
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 147 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 206
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 207 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 266
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 267 NFSVTGG---KWIVSGSEDNLVYIWN-LQTKEIVQKLQGHTDVVISTACHPTENIIASAA 322
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 323 LENDKTIKLW 332
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 41 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 97
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 98 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 154
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 155 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 187
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 188 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 238
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
++KLW+ + GK + + GH Y I
Sbjct: 239 TLKLWDYSKGKCLKTYTGHKNEKYCI 264
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 103/237 (43%), Gaps = 54/237 (22%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
L+GHT AV+ VK+ +G + + S D IK+W GK + + GH ++ +A S++
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
L LVS SDD T+ +W+ + K KT
Sbjct: 103 L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 126
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE--- 411
+ GH V F+P + S SFD+S+++W+ TGK + H PV + F
Sbjct: 127 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 185
Query: 412 -LIYCFRYP--------SNFYC----VVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
LI Y ++ C + D + +S +S + + +L+ + D+TLK+
Sbjct: 186 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 242
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + +
Sbjct: 40 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 95
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
+WS+DS LL+S S D TLK+
Sbjct: 96 -----------------------AWSSDSNLLVSASDDKTLKI 115
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 12 VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV C+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L + L + K Y+ + K
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 246 NFSVTGG---KWIVSGSEDNMVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 302 LENDKTIKLW 311
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 110/227 (48%), Gaps = 12/227 (5%)
Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW 248
L+GH K ++ + + P S+S D +IW K +SGH L ++ V W
Sbjct: 22 LAGHTKAVSSVKFSP-----NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 249 GGD-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL-RTGAFDHTGKQ 306
D ++ + S D T+K+W+ + GK ++ LKGH ++V + + L +G+FD + +
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 307 YSSPEEMKKAALERYNK----IKGNAPERL-VSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361
+ M L ++ + N L VS S D +W+ A + KT +
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
V+ V FSP+G+++ +A+ D +KLW+ + GK + + GH Y I
Sbjct: 197 PVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCI 243
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 131/275 (47%), Gaps = 20/275 (7%)
Query: 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWE 202
MF GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW- 76
Query: 203 PVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDC 261
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D
Sbjct: 77 ----SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL-RTGAFDHTGKQYSSPE-EMKKAALE 319
++++W+ G ++ L H V+++ + + +L + ++D + + + + K ++
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 320 RYN------KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVY--FS-P 370
N K N + +++ + D + LW+ + K KT TGH+ ++ FS
Sbjct: 193 DDNPPVSFVKFSPNG-KYILAATLDNDLKLWDYSKGKCLKT-YTGHKNEKYCIFANFSVT 250
Query: 371 DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405
G+W+ S S D + +WN T + V +GH V
Sbjct: 251 GGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVV 285
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 38/177 (21%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
L+GHT AV+ VK+ +G + + S D IK+W GK + + GH ++ +A S++
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
L LVS SDD T+ +W+ + K KT
Sbjct: 82 L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 105
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
+ GH V F+P + S SFD+S+++W+ TG + H PV + F
Sbjct: 106 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN 161
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LA+ S D +++W +GHK +
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 246 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 302 LENDKTIKLW 311
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L + S ++ W GK +SGHK I+ ++W
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 76
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 77 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 166
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 167 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
++KLW+ + GK + + GH Y I
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCI 243
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 38/177 (21%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
L+GHT AV+ VK+ +G + S D IK+W GK + + GH ++ +A S++
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
L LVS SDD T+ +W+ + K KT
Sbjct: 82 L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 105
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
+ GH V F+P + S SFD+S+++W+ TGK + H PV + F
Sbjct: 106 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
K + GH + V+ V FSP+G+W+A++S DK IK+W GKF GH + +
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 74
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
+WS+DS LL+S S D TLK+
Sbjct: 75 -----------------------AWSSDSNLLVSASDDKTLKI 94
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 304 GKQYSSPEEMKKAALERYNKIKGNAP-----ERLVSGSDDFTMFLWEPAVSKQPKTRMTG 358
G ++ P K L + K + E L + S D + +W K KT ++G
Sbjct: 8 GSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKT-ISG 66
Query: 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
H+ ++ V +S D + SAS DK++K+W+ ++GK + +GH V+ F
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 119
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 143/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 12 VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV C+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 246 NFSVTGG---KWIVSGSEDNMVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 302 LENDKTIKLW 311
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 111/227 (48%), Gaps = 12/227 (5%)
Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW 248
L+GH K ++ + + P S+S D +IW K +SGH L ++ V W
Sbjct: 22 LAGHTKAVSSVKFSP-----NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 249 GGD-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL-RTGAFDHTGKQ 306
D ++ + S D T+K+W+ + GK ++ LKGH ++V + + L +G+FD + +
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 307 YSSPEEMKKAALERYNK----IKGNAPERL-VSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361
+ M L ++ + N L VS S D +W+ A + KT +
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
V+ V FSP+G+++ +A+ D ++KLW+ + GK + + GH Y I
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 132/275 (48%), Gaps = 20/275 (7%)
Query: 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWE 202
MF GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW- 76
Query: 203 PVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDC 261
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D
Sbjct: 77 ----SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL-RTGAFDHTGKQYSSPE-EMKKAALE 319
++++W+ G ++ L H V+++ + + +L + ++D + + + + K ++
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 320 RYN------KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVY--FS-P 370
N K N + +++ + D T+ LW+ + K KT TGH+ ++ FS
Sbjct: 193 DDNPPVSFVKFSPNG-KYILAATLDNTLKLWDYSKGKCLKT-YTGHKNEKYCIFANFSVT 250
Query: 371 DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405
G+W+ S S D + +WN T + V +GH V
Sbjct: 251 GGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVV 285
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 38/177 (21%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
L+GHT AV+ VK+ +G + + S D IK+W GK + + GH ++ +A S++
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
L LVS SDD T+ +W+ + K KT
Sbjct: 82 L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 105
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
+ GH V F+P + S SFD+S+++W+ TG + H PV + F
Sbjct: 106 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN 161
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 246 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 380 F--DKSIKLW 387
DK+IKL+
Sbjct: 302 LENDKTIKLY 311
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 76
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 77 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 166
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 167 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
++KLW+ + GK + + GH Y I
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCI 243
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 22/223 (9%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW 158
+C T+ GH+ V F+P + SGS D +VR+WD+ T + H + V + +
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Query: 159 SADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK 218
+ DG +VS S G + WD +G+ + ++ + + P + ++A+
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-----NGKYILAATL 215
Query: 219 DGDARIWDVSLRKCVICLSGH---------TLAVTCVKWGGDGVIYTGSQDCTIKVWETT 269
D ++WD S KC+ +GH +VT KW I +GS+D + +W
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW-----IVSGSEDNLVYIWNLQ 270
Query: 270 QGKLIRELKGHGHWVNSLALS-TEYALRTGAF--DHTGKQYSS 309
+++++L+GH V S A TE + + A D T K Y S
Sbjct: 271 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLYKS 313
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 38/177 (21%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
L+GHT AV+ VK+ +G + + S D IK+W GK + + GH ++ +A S++
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
L LVS SDD T+ +W+ + K KT
Sbjct: 82 L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 105
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
+ GH V F+P + S SFD+S+++W+ TGK + H PV + F
Sbjct: 106 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + +
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 74
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
+WS+DS LL+S S D TLK+
Sbjct: 75 -----------------------AWSSDSNLLVSASDDKTLKI 94
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 304 GKQYSSPEEMKKAALERYNKIKGNAP-----ERLVSGSDDFTMFLWEPAVSKQPKTRMTG 358
G ++ P K L + K + E L S S D + +W K KT ++G
Sbjct: 8 GSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISG 66
Query: 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
H+ ++ V +S D + SAS DK++K+W+ ++GK + +GH V+ F
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 119
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 246 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 380 F--DKSIKLW 387
DK+IKL+
Sbjct: 302 LENDKTIKLF 311
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 76
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 77 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 166
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 167 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQI 408
++KLW+ + GK + + GH Y I
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCI 243
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 38/177 (21%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
L+GHT AV+ VK+ +G + + S D IK+W GK + + GH ++ +A S++
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
L LVS SDD T+ +W+ + K KT
Sbjct: 82 L------------------------------------LVSASDDKTLKIWDVSSGKCLKT 105
Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
+ GH V F+P + S SFD+S+++W+ TGK + H PV + F
Sbjct: 106 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + +
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 74
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
+WS+DS LL+S S D TLK+
Sbjct: 75 -----------------------AWSSDSNLLVSASDDKTLKI 94
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 304 GKQYSSPEEMKKAALERYNKIKGNAP-----ERLVSGSDDFTMFLWEPAVSKQPKTRMTG 358
G ++ P K L + K + E L S S D + +W K KT ++G
Sbjct: 8 GSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISG 66
Query: 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
H+ ++ V +S D + SAS DK++K+W+ ++GK + +GH V+ F
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 119
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 131/307 (42%), Gaps = 64/307 (20%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
T+ GHT++V ++F G+ LAS S D T++LWD + GH + V ++ +G
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 204
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
H+VS S+ ++ W+ QTG +GH++W+ V N S S D
Sbjct: 205 DHIVSASRDKTIKMWEVQTGY-CVKTFTGHREWV-----RMVRPNQDGTLIASCSNDQTV 258
Query: 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG---------------------VIYTGSQDC 261
R+W V+ ++C L H V C+ W + + +GS+D
Sbjct: 259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318
Query: 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321
TIK+W+ + G + L GH +WV G H+G ++
Sbjct: 319 TIKMWDVSTGMCLMTLVGHDNWVR------------GVLFHSGGKF-------------- 352
Query: 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381
++S +DD T+ +W+ + KT + H+ V + F +V + S D
Sbjct: 353 ----------ILSCADDKTLRVWDYKNKRCMKT-LNAHEHFVTSLDFHKTAPYVVTGSVD 401
Query: 382 KSIKLWN 388
+++K+W
Sbjct: 402 QTVKVWE 408
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/308 (27%), Positives = 135/308 (43%), Gaps = 24/308 (7%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
++GH V V F P + S S D T+++WD T GH + V I++ GK
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223
L S S ++ WD Q G + GH ++ +S P N VSAS+D +
Sbjct: 164 LLASCSADMTIKLWDFQ-GFECIRTMHGHDHNVSSVSIMP---NGD--HIVSASRDKTIK 217
Query: 224 IWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGH 282
+W+V CV +GH V V+ DG +I + S D T++VW + EL+ H H
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 277
Query: 283 WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF 342
V ++ + E + YSS E A K G L+SGS D T+
Sbjct: 278 VVECISWAPESS------------YSSISE----ATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV 402
+W+ + T + GH V V F G+++ S + DK++++W+ + + H
Sbjct: 322 MWDVSTGMCLMT-LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE 380
Query: 403 GPVYQIRF 410
V + F
Sbjct: 381 HFVTSLDF 388
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 101/223 (45%), Gaps = 18/223 (8%)
Query: 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS 159
C T+ GH V SV+ P+G + S S D T+++W++ T + TGH+ WV + +
Sbjct: 184 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243
Query: 160 ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP---------------V 204
DG + S S ++ W T K L H+ + ISW P
Sbjct: 244 QDGTLIASCSNDQTVRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISEATGSETK 302
Query: 205 HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW-GGDGVIYTGSQDCTI 263
P +S S+D ++WDVS C++ L GH V V + G I + + D T+
Sbjct: 303 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 362
Query: 264 KVWETTQGKLIRELKGHGHWVNSLAL-STEYALRTGAFDHTGK 305
+VW+ + ++ L H H+V SL T + TG+ D T K
Sbjct: 363 RVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 405
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 87/189 (46%), Gaps = 27/189 (14%)
Query: 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS 159
C T GH E V V + DG +AS S D TVR+W + T+ + H++ V CI+W+
Sbjct: 226 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA 285
Query: 160 AD--------------------GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI 199
+ G L+SGS+ ++ WD TG L GH W+ G
Sbjct: 286 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVRG- 343
Query: 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS 258
V ++ + +S + D R+WD ++C+ L+ H VT + + + TGS
Sbjct: 344 ----VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 399
Query: 259 QDCTIKVWE 267
D T+KVWE
Sbjct: 400 VDQTVKVWE 408
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP-KTRMTGHQQLV 363
K+++S ++K +E +K+ A E SG + + + P K ++GH+ V
Sbjct: 53 KKWTSVIRLQKKVMELESKL-NEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPV 111
Query: 364 NHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
V F P + SAS D +IK+W+ TG F +GH V I F+
Sbjct: 112 TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 159
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136
RC T+ H V S+ F + +GS D TV++W+
Sbjct: 370 KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 153/318 (48%), Gaps = 29/318 (9%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
+ GH + V++ G ++ SGS D T+++W T + GH V WS+ +
Sbjct: 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMR 168
Query: 164 H--LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221
++SGS L+ W+ +TG+ + L GH + +HL+ +R VS S+D
Sbjct: 169 DNIIISGSTDRTLKVWNAETGECI-HTLYGHTSTV-----RCMHLHE--KRVVSGSRDAT 220
Query: 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHG 281
R+WD+ +C+ L GH AV CV++ G V+ +G+ D +KVW+ + L+GH
Sbjct: 221 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV-SGAYDFMVKVWDPETETCLHTLQGHT 279
Query: 282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER---LVSGSDD 338
+ V SL + + +G+ D + + + L + + + LVSG+ D
Sbjct: 280 NRVYSLQFDGIHVV-SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNAD 338
Query: 339 FTMFLWEPAVSKQPKTRM--TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396
T+ +W+ + +T HQ V + F+ + +V ++S D ++KLW+ TG+F+
Sbjct: 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIR 396
Query: 397 VFR-----GHVGPVYQIR 409
G G V++IR
Sbjct: 397 NLVTLESGGSGGVVWRIR 414
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 98/182 (53%), Gaps = 16/182 (8%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW 158
+C + GH AV V + DGR++ SG+ D V++WD T+T + GH N V + +
Sbjct: 230 QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF 287
Query: 159 SADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK 218
DG H+VSGS ++ WD +TG + L+GH+ +G+ + L VS +
Sbjct: 288 --DGIHVVSGSLDTSIRVWDVETGNCI-HTLTGHQSLTSGMELKDNIL-------VSGNA 337
Query: 219 DGDARIWDVSLRKCVICLSG---HTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIR 275
D +IWD+ +C+ L G H AVTC+++ + VI T S D T+K+W+ G+ IR
Sbjct: 338 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI-TSSDDGTVKLWDLKTGEFIR 396
Query: 276 EL 277
L
Sbjct: 397 NL 398
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 104/258 (40%), Gaps = 59/258 (22%)
Query: 212 RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG---DGVIYTGSQDCTIKVWET 268
R VS S D ++W KC+ L GHT V W D +I +GS D T+KVW
Sbjct: 131 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVWNA 186
Query: 269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328
G+ I L GH V + L
Sbjct: 187 ETGECIHTLYGHTSTVRCMHLH-------------------------------------- 208
Query: 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
+R+VSGS D T+ +W+ + M GH V V + DG+ V S ++D +K+W+
Sbjct: 209 EKRVVSGSRDATLRVWDIETGQCLHVLM-GHVAAVRCVQY--DGRRVVSGAYDFMVKVWD 265
Query: 389 GTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY----------CVVDMSCCMSLYS-W 437
T + +GH VY ++F+ I+ + C+ ++ SL S
Sbjct: 266 PETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM 325
Query: 438 SADSRLLLSGSKDSTLKV 455
+L+SG+ DST+K+
Sbjct: 326 ELKDNILVSGNADSTVKI 343
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG---HKNWVLCI 156
C T+ GH L+ L SG+ D+TV++WD+ T + G H++ V C+
Sbjct: 311 CIHTLTGHQS--LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL 368
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWE 202
++ + +++ S G ++ WD +TG+ N ++ G+ W
Sbjct: 369 QFNKN--FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 412
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 160/376 (42%), Gaps = 87/376 (23%)
Query: 103 TIAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMF-----KCTGHKNWVLCI 156
T+ HT+ V ++A D + S S D ++ LW L + + TGH ++V +
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
S+DG+ +SGS GEL+ WD G S GH K + ++ + R+ VSA
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDLAAG-VSTRRFVGHTKDVLSVA-----FSLDNRQIVSA 490
Query: 217 SKDGDARIWDVSLRKCVICLS----GHTLAVTCVKWGGDGV---IYTGSQDCTIKVWETT 269
S+D ++W+ +L +C +S GH V+CV++ + + I + S D T+KVW +
Sbjct: 491 SRDRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
KL L GH +V+++A+S + +L
Sbjct: 550 NCKLRSTLAGHTGYVSTVAVSPDGSL---------------------------------- 575
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
SG D + LW+ A K K +++ + FSP+ W+ +A+ + IK+W+
Sbjct: 576 --CASGGKDGVVLLWDLAEGK--KLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDL 630
Query: 390 TTGKFVAVFR----------GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA 439
+ V + + GP R ++IYC + +WSA
Sbjct: 631 ESKSIVEDLKVDLKAEAEKADNSGPAATKR-KVIYC-----------------TSLNWSA 672
Query: 440 DSRLLLSGSKDSTLKV 455
D L SG D ++V
Sbjct: 673 DGSTLFSGYTDGVIRV 688
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 32/169 (18%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW 158
+ +T+AGHT V +VA SPDG ASG D V LWDL ++ + + + + +
Sbjct: 552 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCF 610
Query: 159 SADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK 218
S + L + ++ G ++ WD ++ K + + V L A + A
Sbjct: 611 SPNRYWLCAATEHG-IKIWDLES-----------KSIVEDLK---VDLKAEAEK---ADN 652
Query: 219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW 266
G A + RK + C T + W DG +++G D I+VW
Sbjct: 653 SGPA----ATKRKVIYC--------TSLNWSADGSTLFSGYTDGVIRVW 689
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 135/308 (43%), Gaps = 70/308 (22%)
Query: 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178
D +++ SG D T+++WD NT TGH VLC+ + D + +++GS ++ WD
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWD 199
Query: 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW------DVSLRKC 232
TG+ N L H + + +HL V+ SKD +W D++LR+
Sbjct: 200 VNTGEML-NTLIHHCEAV-------LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRV 251
Query: 233 VICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE 292
++ GH AV V + D I + S D TIKVW T+ + +R L GH +
Sbjct: 252 LV---GHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI-------- 299
Query: 293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP 352
A L+ +++ +VSGS D T+ LW+
Sbjct: 300 -----------------------ACLQYRDRL-------VVSGSSDNTIRLWDIECGACL 329
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN--------GTTGKF-VAVFRGHVG 403
+ + GH++LV + F D + + S ++D IK+W+ G + H G
Sbjct: 330 RV-LEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG 386
Query: 404 PVYQIRFE 411
V++++F+
Sbjct: 387 RVFRLQFD 394
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 107/247 (43%), Gaps = 72/247 (29%)
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQ 270
++ VS +D +IWD + +C L+GHT +V C+++ + VI TGS D T++VW+
Sbjct: 144 QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD-ERVIITGSSDSTVRVWDVNT 202
Query: 271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330
G+++ L H V L R+N
Sbjct: 203 GEMLNTLIHHCEAVLHL--------------------------------RFNN------G 224
Query: 331 RLVSGSDDFTMFLWEPAVSKQPKTR--MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
+V+ S D ++ +W+ A R + GH+ VN V F D +++ SAS D++IK+WN
Sbjct: 225 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWN 282
Query: 389 GTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS 448
+T +FV GH I C +Y RL++SGS
Sbjct: 283 TSTCEFVRTLNGHKRG--------IACLQYR---------------------DRLVVSGS 313
Query: 449 KDSTLKV 455
D+T+++
Sbjct: 314 SDNTIRL 320
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 93/188 (49%), Gaps = 5/188 (2%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
+ GH+ V VA S +G S S D ++RLW+L +K GH VL +A+S D +
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223
+VSG + L+ W+ + H W++ + + P L+AP VS D +
Sbjct: 123 QIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSP-SLDAPV--IVSGGWDNLVK 179
Query: 224 IWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGS-QDCTIKVWETTQGKLIRELKGHGH 282
+WD++ + V L GHT VT V DG + S +D ++W+ T+G+ + E+ G
Sbjct: 180 VWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAA-GA 238
Query: 283 WVNSLALS 290
+N + S
Sbjct: 239 PINQICFS 246
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 90/369 (24%), Positives = 159/369 (43%), Gaps = 83/369 (22%)
Query: 104 IAGHTEAVLSVAF--SPD-GRQLASGSGDTTVRLWDLNTQTPMFKCT---------GHKN 151
+ GH V S+A +P+ ++ S S D T+ W N +C+ GH
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR 211
+V +A S +G VS S L+ W+ Q G+ L GH K + +++ P + R
Sbjct: 69 FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFL-GHTKDVLSVAFSPDN-----R 122
Query: 212 RFVSASKDGDARIWDVSLRKCVICLS--GHTLAVTCVKWG---GDGVIYTGSQDCTIKVW 266
+ VS +D R+W+V +C+ LS HT V+CV++ VI +G D +KVW
Sbjct: 123 QIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Query: 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326
+ G+L+ +LKGH ++V S+ +S + +L K ++ KG
Sbjct: 182 DLATGRLVTDLKGHTNYVTSVTVSPDGSL-------------CASSDKDGVARLWDLTKG 228
Query: 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL 386
A + +G+ +N + FSP+ W+ +A+ +K I++
Sbjct: 229 EALSEMAAGAP-------------------------INQICFSPNRYWMCAAT-EKGIRI 262
Query: 387 WNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS 446
++ + + P +Q +++ P C+S+ +WSAD L S
Sbjct: 263 FDLENKDIIV----ELAPEHQGSKKIV-----PE----------CVSI-AWSADGSTLYS 302
Query: 447 GSKDSTLKV 455
G D+ ++V
Sbjct: 303 GYTDNVIRV 311
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 73/133 (54%), Gaps = 9/133 (6%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-HKNWVLCIA 157
+C GHT+ VLSVAFSPD RQ+ SG D +R+W++ + G H +WV C+
Sbjct: 100 QCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVR 159
Query: 158 WSA--DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
+S D +VSG ++ WD TG+ + L GH ++T ++ P + C S
Sbjct: 160 FSPSLDAPVIVSGGWDNLVKVWDLATGRLVTD-LKGHTNYVTSVTVSPD--GSLC---AS 213
Query: 216 ASKDGDARIWDVS 228
+ KDG AR+WD++
Sbjct: 214 SDKDGVARLWDLT 226
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 39/126 (30%), Gaps = 47/126 (37%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK----------CTG 148
R + GHT V SV SPDG AS D RLWDL + + C
Sbjct: 187 RLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFS 246
Query: 149 HKNWVLC-------------------------------------IAWSADGKHLVSGSKA 171
+ +C IAWSADG L SG
Sbjct: 247 PNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTD 306
Query: 172 GELQCW 177
++ W
Sbjct: 307 NVIRVW 312
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/316 (21%), Positives = 132/316 (41%), Gaps = 33/316 (10%)
Query: 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
N + HT+AV FS DG+++AS D T++++ T + + H++ VLC A
Sbjct: 611 NLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCA 670
Query: 158 WSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS 217
+S D + + + S +++ W+ TG+ + H + + H + A+
Sbjct: 671 FSTDDRFIATCSVDKKVKIWNSMTGELV-HTYDEHSEQVNC-----CHFTNSSHHLLLAT 724
Query: 218 KDGDA--RIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVWETTQGKLI 274
D ++WD++ ++C + GHT +V ++ D ++ + S D T+K+W+ T
Sbjct: 725 GSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANER 784
Query: 275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334
+ + ++N P+E + + + +V+
Sbjct: 785 KSINVKQFFLN---------------------LEDPQE-DMEVIVKCCSWSADGARIMVA 822
Query: 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF 394
+ +FL++ S TGH + + FSP A ++LWN +
Sbjct: 823 AKN--KIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSK 880
Query: 395 VAVFRGHVGPVYQIRF 410
VA RGH+ V+ + F
Sbjct: 881 VADCRGHLSWVHGVMF 896
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 110/432 (25%), Positives = 167/432 (38%), Gaps = 87/432 (20%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD----------------LNTQTP 142
C T+ GHT +V FSPD + LAS S D T++LWD LN + P
Sbjct: 740 ECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDP 799
Query: 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWE 202
+ V C +WSADG ++ +K ++ +D T G +GH I +
Sbjct: 800 Q---EDMEVIVKCCSWSADGARIMVAAK-NKIFLFDIHTSGLLGEIHTGHHSTIQYCDFS 855
Query: 203 PVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDC 261
P + A V A +W+ R V GH V V + DG + T S D
Sbjct: 856 PQNHLA-----VVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQ 910
Query: 262 TIKVWETTQ------GKLIRELKGHGHWVNSLALSTEYAL-------RTGAFDH-TGKQY 307
TI++WET + L +E+ + L+ ++ RTG D+ T Q
Sbjct: 911 TIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQV 970
Query: 308 S----SP---------EEMKKAALERYNK---------------IKGNAPER-LVSGSDD 338
S SP E LE N I+ A E+ L+S SDD
Sbjct: 971 SCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDD 1030
Query: 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF 398
+ +W + K R GHQ+ V + + + S SFD ++K+WN TG F
Sbjct: 1031 AEIQVWNWQLDKCIFLR--GHQETVKDFRLLKNSR-LLSWSFDGTVKVWNIITGNKEKDF 1087
Query: 399 RGHVGPVYQI---------------RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL 443
H G V + I+ F + + + C+ ++S DS L
Sbjct: 1088 VCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTL 1147
Query: 444 LLSGSKDSTLKV 455
L +G + +++
Sbjct: 1148 LATGDDNGEIRI 1159
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 135/353 (38%), Gaps = 63/353 (17%)
Query: 76 VSVEKVLSIVYQPQAVF--------RIRPVNRCSATIAGHTEAVLSVA-FSPDGRQLASG 126
V +++ + +V+Q V R++ +N + I TEA +S SP + +A G
Sbjct: 926 VMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFG 985
Query: 127 SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186
+ + + +L HK V I ++AD K L+S S E+Q W+ Q K
Sbjct: 986 DENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF 1045
Query: 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV---SLRKCVICLSGHTLAV 243
L GH++ + R +S S DG ++W++ + K +C G L+
Sbjct: 1046 --LRGHQETVKDFRL------LKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSC 1097
Query: 244 TCVKWGGDGVIYTG-SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302
D ++ S D T K+W + EL+GH V A S + L D
Sbjct: 1098 DI---SHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDD- 1153
Query: 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
N R+ + S+ + L P + T H
Sbjct: 1154 ------------------------NGEIRIWNVSNGELLHLCAPLSEEGAAT----HGGW 1185
Query: 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF--------RGHVGPVYQ 407
V + FSPDG+ + SA IK WN TG+ F + HV P ++
Sbjct: 1186 VTDLCFSPDGKMLISAG--GYIKWWNVVTGESSQTFYTNGTNLKKIHVSPDFK 1236
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 16/125 (12%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC--------TGHKNWVLC 155
+ GH V AFS D LA+G + +R+W+++ + C H WV
Sbjct: 1129 LRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTD 1188
Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
+ +S DGK L+S G ++ W+ TG+ S + G + + +H++ + +V+
Sbjct: 1189 LCFSPDGKMLISA--GGYIKWWNVVTGE------SSQTFYTNGTNLKKIHVSPDFKTYVT 1240
Query: 216 ASKDG 220
G
Sbjct: 1241 VDNLG 1245
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 18/143 (12%)
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
+R+ S D T+ +++ A + + + H+ V FS D +++A+ S DK +K+WN
Sbjct: 634 QRIASCGADKTLQVFK-AETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNS 692
Query: 390 TTGKFVAVFRGHVGPVYQIRF-----ELIYCFRYPSNFYCVVDMS---CCMSLY------ 435
TG+ V + H V F L+ F + D++ C +++
Sbjct: 693 MTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSV 752
Query: 436 ---SWSADSRLLLSGSKDSTLKV 455
+S D +LL S S D TLK+
Sbjct: 753 NHCRFSPDDKLLASCSADGTLKL 775
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 140/345 (40%), Gaps = 59/345 (17%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVL---- 154
C T+ GHT +V FSPD LAS S D T+RLWD+ + K K + L
Sbjct: 741 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER-KSINVKRFFLSSED 799
Query: 155 ----------CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPV 204
C +WSADG ++ +K ++ +D T +GH I + P
Sbjct: 800 PPEDVEVIVKCCSWSADGDKIIVAAK-NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY 858
Query: 205 -HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCT 262
HL V A +W++ R V GH V V + DG + T S D T
Sbjct: 859 DHLA------VIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 912
Query: 263 IKVWETTQG------KLIRELKGHGHWVNSLALSTE-------YALRTGAFDHTGKQYSS 309
I+VWET + L +E+ ++ L+ + A +TG D Y
Sbjct: 913 IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID-----YLP 967
Query: 310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM----TGHQQLVNH 365
++ L + E + G +D + + E P R+ GH++ V H
Sbjct: 968 EAQVSCCCLSPH-------LEYVAFGDEDGAIKIIEL-----PNNRVFSSGVGHKKAVRH 1015
Query: 366 VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410
+ F+ DG+ + S+S D I++WN TG +V + H V R
Sbjct: 1016 IQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRL 1059
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/316 (21%), Positives = 135/316 (42%), Gaps = 33/316 (10%)
Query: 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
N + HT+AV FS DG+++AS D T++++ T + H++ VLC A
Sbjct: 612 NLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCA 671
Query: 158 WSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS 217
+S+D ++ + S +++ WD TGK + H + + H + A+
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLV-HTYDEHSEQVNC-----CHFTNKSNHLLLAT 725
Query: 218 KDGD--ARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVWETTQGKLI 274
D ++WD++ ++C + GHT +V ++ D ++ + S D T+++W+
Sbjct: 726 GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER 785
Query: 275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334
+ + V LS+E PE+++ + + + + +V+
Sbjct: 786 KSIN-----VKRFFLSSE---------------DPPEDVE--VIVKCCSWSADGDKIIVA 823
Query: 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF 394
+ + L++ S TGH + + FSP A ++LWN +
Sbjct: 824 AKN--KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK 881
Query: 395 VAVFRGHVGPVYQIRF 410
VA RGH+ V+ + F
Sbjct: 882 VADCRGHLSWVHGVMF 897
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 18/205 (8%)
Query: 96 PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC 155
P NR ++ GH +AV + F+ DG+ L S S D+ +++W+ T +F H+ V
Sbjct: 998 PNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKD 1056
Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
D + L+S S G ++ W+ TG+ + + H+ + + +++ +F S
Sbjct: 1057 FRLLQDSR-LLSWSFDGTVKVWNVITGRIERD-FTCHQGTVLSCA-----ISSDATKFSS 1109
Query: 216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLI 274
S D A+IW L + L GH V C + DG++ TG + I++W + G+L+
Sbjct: 1110 TSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1169
Query: 275 REL---------KGHGHWVNSLALS 290
HG WV + S
Sbjct: 1170 HSCAPISVEEGTATHGGWVTDVCFS 1194
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW 158
R H VLS A S D + +S S D T ++W + +P+ + GH V C A+
Sbjct: 1083 RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF 1142
Query: 159 SADGKHLVSGSKAGELQCWDPQTGK--PSGNPLS------GHKKWITGISWEP 203
S DG L +G GE++ W+ G+ S P+S H W+T + + P
Sbjct: 1143 SLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSP 1195
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 94/244 (38%), Gaps = 50/244 (20%)
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETT 269
+R S D +++ + ++ + H V C + D I T S D +K+W++
Sbjct: 635 QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 694
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
GKL+ H VN T +H
Sbjct: 695 TGKLVHTYDEHSEQVNCCHF-------TNKSNHL-------------------------- 721
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
L +GS+DF + LW+ K+ + M GH VNH FSPD + +AS S D +++LW+
Sbjct: 722 -LLATGSNDFFLKLWDLN-QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD- 778
Query: 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449
V + ++ + P + +V CC SWSAD ++ +K
Sbjct: 779 -------VRSANERKSINVKRFFLSSEDPPEDVEVIV--KCC----SWSADGDKIIVAAK 825
Query: 450 DSTL 453
+ L
Sbjct: 826 NKVL 829
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 74/360 (20%), Positives = 135/360 (37%), Gaps = 51/360 (14%)
Query: 79 EKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN 138
+K++ +F I + GH + FSP V LW+++
Sbjct: 818 DKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID 877
Query: 139 TQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITG 198
++ + C GH +WV + +S DG ++ S ++ W +T K N K+ I
Sbjct: 878 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW--ETKKVCKNSAIVLKQEIDV 935
Query: 199 ISWEPVHLN--------------------------------APCRRFVS-ASKDGDARIW 225
+ E + +P +V+ +DG +I
Sbjct: 936 VFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKII 995
Query: 226 DVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWV 284
++ + GH AV +++ DG + + S+D I+VW G + L+ H V
Sbjct: 996 ELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETV 1054
Query: 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER-YNKIKGNA--------PERLVSG 335
L + L + +FD T K ++ + +ER + +G + S
Sbjct: 1055 KDFRLLQDSRLLSWSFDGTVKVWN----VITGRIERDFTCHQGTVLSCAISSDATKFSST 1110
Query: 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395
S D T +W + P + GH V FS DG +A+ + I++WN + G+ +
Sbjct: 1111 SADKTAKIWSFDL-LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1169
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT---------GHKNWVL 154
+ GH V AFS DG LA+G + +R+W+++ + C H WV
Sbjct: 1130 LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVT 1189
Query: 155 CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFV 214
+ +S D K LVS G L+ W+ TG S + G + + +H++ R +V
Sbjct: 1190 DVCFSPDSKTLVSA--GGYLKWWNVATGD------SSQTFYTNGTNLKKIHVSPDFRTYV 1241
Query: 215 SASKDGDARIWDV 227
+ G I V
Sbjct: 1242 TVDNLGILYILQV 1254
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 140/345 (40%), Gaps = 59/345 (17%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVL---- 154
C T+ GHT +V FSPD LAS S D T+RLWD+ + K K + L
Sbjct: 734 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER-KSINVKRFFLSSED 792
Query: 155 ----------CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPV 204
C +WSADG ++ +K ++ +D T +GH I + P
Sbjct: 793 PPEDVEVIVKCCSWSADGDKIIVAAK-NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY 851
Query: 205 -HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCT 262
HL V A +W++ R V GH V V + DG + T S D T
Sbjct: 852 DHLA------VIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 905
Query: 263 IKVWETTQG------KLIRELKGHGHWVNSLALSTE-------YALRTGAFDHTGKQYSS 309
I+VWET + L +E+ ++ L+ + A +TG D Y
Sbjct: 906 IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID-----YLP 960
Query: 310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM----TGHQQLVNH 365
++ L + E + G +D + + E P R+ GH++ V H
Sbjct: 961 EAQVSCCCLSPH-------LEYVAFGDEDGAIKIIEL-----PNNRVFSSGVGHKKAVRH 1008
Query: 366 VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410
+ F+ DG+ + S+S D I++WN TG +V + H V R
Sbjct: 1009 IQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRL 1052
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/316 (21%), Positives = 135/316 (42%), Gaps = 33/316 (10%)
Query: 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
N + HT+AV FS DG+++AS D T++++ T + H++ VLC A
Sbjct: 605 NLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCA 664
Query: 158 WSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS 217
+S+D ++ + S +++ WD TGK + H + + H + A+
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLV-HTYDEHSEQVNC-----CHFTNKSNHLLLAT 718
Query: 218 KDGD--ARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVWETTQGKLI 274
D ++WD++ ++C + GHT +V ++ D ++ + S D T+++W+
Sbjct: 719 GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER 778
Query: 275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334
+ + V LS+E PE+++ + + + + +V+
Sbjct: 779 KSIN-----VKRFFLSSE---------------DPPEDVE--VIVKCCSWSADGDKIIVA 816
Query: 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF 394
+ + L++ S TGH + + FSP A ++LWN +
Sbjct: 817 AKN--KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK 874
Query: 395 VAVFRGHVGPVYQIRF 410
VA RGH+ V+ + F
Sbjct: 875 VADCRGHLSWVHGVMF 890
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 18/205 (8%)
Query: 96 PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC 155
P NR ++ GH +AV + F+ DG+ L S S D+ +++W+ T +F H+ V
Sbjct: 991 PNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKD 1049
Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
D + L+S S G ++ W+ TG+ + + H+ + + +++ +F S
Sbjct: 1050 FRLLQDSR-LLSWSFDGTVKVWNVITGRIERD-FTCHQGTVLSCA-----ISSDATKFSS 1102
Query: 216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLI 274
S D A+IW L + L GH V C + DG++ TG + I++W + G+L+
Sbjct: 1103 TSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1162
Query: 275 REL---------KGHGHWVNSLALS 290
HG WV + S
Sbjct: 1163 HSCAPISVEEGTATHGGWVTDVCFS 1187
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW 158
R H VLS A S D + +S S D T ++W + +P+ + GH V C A+
Sbjct: 1076 RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF 1135
Query: 159 SADGKHLVSGSKAGELQCWDPQTGK--PSGNPLS------GHKKWITGISWEP 203
S DG L +G GE++ W+ G+ S P+S H W+T + + P
Sbjct: 1136 SLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSP 1188
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 94/244 (38%), Gaps = 50/244 (20%)
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETT 269
+R S D +++ + ++ + H V C + D I T S D +K+W++
Sbjct: 628 QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
GKL+ H VN T +H
Sbjct: 688 TGKLVHTYDEHSEQVNCCHF-------TNKSNHL-------------------------- 714
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
L +GS+DF + LW+ K+ + M GH VNH FSPD + +AS S D +++LW+
Sbjct: 715 -LLATGSNDFFLKLWDLN-QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD- 771
Query: 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449
V + ++ + P + +V CC SWSAD ++ +K
Sbjct: 772 -------VRSANERKSINVKRFFLSSEDPPEDVEVIV--KCC----SWSADGDKIIVAAK 818
Query: 450 DSTL 453
+ L
Sbjct: 819 NKVL 822
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 76/360 (21%), Positives = 136/360 (37%), Gaps = 51/360 (14%)
Query: 79 EKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN 138
+K++ +F I + GH + FSP V LW+++
Sbjct: 811 DKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID 870
Query: 139 TQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITG 198
++ + C GH +WV + +S DG ++ S ++ W +T K N K+ I
Sbjct: 871 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW--ETKKVCKNSAIVLKQEIDV 928
Query: 199 ISWEP------------VHLNA--------------------PCRRFVS-ASKDGDARIW 225
+ E + L A P +V+ +DG +I
Sbjct: 929 VFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKII 988
Query: 226 DVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWV 284
++ + GH AV +++ DG + + S+D I+VW G + L+ H V
Sbjct: 989 ELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETV 1047
Query: 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER-YNKIKGNA--------PERLVSG 335
L + L + +FD T K ++ + +ER + +G + S
Sbjct: 1048 KDFRLLQDSRLLSWSFDGTVKVWN----VITGRIERDFTCHQGTVLSCAISSDATKFSST 1103
Query: 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395
S D T +W + P + GH V FS DG +A+ + I++WN + G+ +
Sbjct: 1104 SADKTAKIWSFDL-LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1162
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT---------GHKNWVL 154
+ GH V AFS DG LA+G + +R+W+++ + C H WV
Sbjct: 1123 LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVT 1182
Query: 155 CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFV 214
+ +S D K LVS G L+ W+ TG S + G + + +H++ R +V
Sbjct: 1183 DVCFSPDSKTLVSA--GGYLKWWNVATGD------SSQTFYTNGTNLKKIHVSPDFRTYV 1234
Query: 215 SASKDGDARIWDV 227
+ G I V
Sbjct: 1235 TVDNLGILYILQV 1247
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/353 (22%), Positives = 144/353 (40%), Gaps = 35/353 (9%)
Query: 58 ISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSA----TIAGHTEAVLS 113
+S+ + L L+ K + Q I PV R T+ GH + +
Sbjct: 1 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173
+ + D R L S S D + +WD T + +WV+ A++ G ++ G
Sbjct: 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 174 LQCWDPQTGKPS---GNPLSGHKKWITGISWEPVHLNAPCRRF------VSASKDGDARI 224
++ +T + + L+GH +++ C RF V++S D +
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLS------------CCRFLDDNQIVTSSGDTTCAL 168
Query: 225 WDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHW 283
WD+ + +GHT V + D ++ +G+ D + K+W+ +G + GH
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 284 VNSLA-LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG-------NAPERLVSG 335
+N++ A TG+ D T + + + + N I G + L++G
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
DDF +W+ A+ + GH V+ + + DG VA+ S+D +K+WN
Sbjct: 289 YDDFNCNVWD-ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 117/278 (42%), Gaps = 35/278 (12%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDP-QTGKPSGNPLSGHKKWITGISWEPVH- 205
GH + + W D + LVS S+ G+L WD T K PL W+ ++ P
Sbjct: 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL--RSSWVMTCAYAPSGN 110
Query: 206 ------LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259
L+ C + +++G+ R+ R+ L+GHT ++C ++ D I T S
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRV----SRE----LAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL-RTGAFDHTGKQYSSPEEMKKAAL 318
D T +W+ G+ GH V SL+L+ + L +GA D + K + E M +
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222
Query: 319 ERY----NKI----KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLV---NHVY 367
+ N I GNA +GSDD T L++ ++ T H ++ V
Sbjct: 223 TGHESDINAICFFPNGNA---FATGSDDATCRLFDLRADQELMT--YSHDNIICGITSVS 277
Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405
FS G+ + + D + +W+ V GH V
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 83/221 (37%), Gaps = 21/221 (9%)
Query: 236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEY 293
L GH + + WG D ++ + SQD + +W++ + + WV + A + +
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----------PERLVSGSDDFTMFL 343
+ G D+ Y+ + R ++ G+ ++V+ S D T L
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSR--ELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403
W+ +Q T H V + +PD + S + D S KLW+ G F GH
Sbjct: 169 WDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL 444
+ I CF N + L+ AD L+
Sbjct: 228 DINAI------CFFPNGNAFATGSDDATCRLFDLRADQELM 262
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/353 (22%), Positives = 144/353 (40%), Gaps = 35/353 (9%)
Query: 58 ISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSA----TIAGHTEAVLS 113
+S+ + L L+ K + Q I PV R T+ GH + +
Sbjct: 1 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173
+ + D R L S S D + +WD T + +WV+ A++ G ++ G
Sbjct: 61 MHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 174 LQCWDPQTGKPS---GNPLSGHKKWITGISWEPVHLNAPCRRF------VSASKDGDARI 224
++ +T + + L+GH +++ C RF V++S D +
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLS------------CCRFLDDNQIVTSSGDTTCAL 168
Query: 225 WDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHW 283
WD+ + +GHT V + D ++ +G+ D + K+W+ +G + GH
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 284 VNSLA-LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG-------NAPERLVSG 335
+N++ A TG+ D T + + + + N I G + L++G
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
DDF +W+ A+ + GH V+ + + DG VA+ S+D +K+WN
Sbjct: 289 YDDFNCNVWD-ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 117/278 (42%), Gaps = 35/278 (12%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDP-QTGKPSGNPLSGHKKWITGISWEPVH- 205
GH + + W D + L+S S+ G+L WD T K PL W+ ++ P
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL--RSSWVMTCAYAPSGN 110
Query: 206 ------LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259
L+ C + +++G+ R+ R+ L+GHT ++C ++ D I T S
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRV----SRE----LAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL-RTGAFDHTGKQYSSPEEMKKAAL 318
D T +W+ G+ GH V SL+L+ + L +GA D + K + E M +
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222
Query: 319 ERY----NKI----KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLV---NHVY 367
+ N I GNA +GSDD T L++ ++ T H ++ V
Sbjct: 223 TGHESDINAICFFPNGNA---FATGSDDATCRLFDLRADQELMT--YSHDNIICGITSVS 277
Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405
FS G+ + + D + +W+ V GH V
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 83/221 (37%), Gaps = 21/221 (9%)
Query: 236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEY 293
L GH + + WG D ++ + SQD + +W++ + + WV + A + +
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----------PERLVSGSDDFTMFL 343
+ G D+ Y+ + R ++ G+ ++V+ S D T L
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSR--ELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403
W+ +Q T H V + +PD + S + D S KLW+ G F GH
Sbjct: 169 WDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL 444
+ I CF N + L+ AD L+
Sbjct: 228 DINAI------CFFPNGNAFATGSDDATCRLFDLRADQELM 262
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/340 (22%), Positives = 139/340 (40%), Gaps = 35/340 (10%)
Query: 71 LEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSA----TIAGHTEAVLSVAFSPDGRQLASG 126
L+ K + Q I PV R T+ GH + ++ + D R L S
Sbjct: 25 LKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSA 84
Query: 127 SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS- 185
S D + +WD T + +WV+ A++ G ++ G ++ +T + +
Sbjct: 85 SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 144
Query: 186 --GNPLSGHKKWITGISWEPVHLNAPCRRF------VSASKDGDARIWDVSLRKCVICLS 237
L+GH +++ C RF V++S D +WD+ + +
Sbjct: 145 RVSRELAGHTGYLS------------CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 192
Query: 238 GHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA-LSTEYAL 295
GHT V + D ++ +G+ D + K+W+ +G + GH +N++ A
Sbjct: 193 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 252
Query: 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKG-------NAPERLVSGSDDFTMFLWEPAV 348
TG+ D T + + + + N I G + L++G DDF +W+ A+
Sbjct: 253 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD-AL 311
Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
+ GH V+ + + DG VA+ S+D +K+WN
Sbjct: 312 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 117/278 (42%), Gaps = 35/278 (12%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDP-QTGKPSGNPLSGHKKWITGISWEPVH- 205
GH + + W D + LVS S+ G+L WD T K PL W+ ++ P
Sbjct: 64 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL--RSSWVMTCAYAPSGN 121
Query: 206 ------LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259
L+ C + +++G+ R+ R+ L+GHT ++C ++ D I T S
Sbjct: 122 YVACGGLDNICSIYNLKTREGNVRV----SRE----LAGHTGYLSCCRFLDDNQIVTSSG 173
Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL-RTGAFDHTGKQYSSPEEMKKAAL 318
D T +W+ G+ GH V SL+L+ + L +GA D + K + E M +
Sbjct: 174 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 233
Query: 319 ERY----NKI----KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLV---NHVY 367
+ N I GNA +GSDD T L++ ++ T H ++ V
Sbjct: 234 TGHESDINAICFFPNGNA---FATGSDDATCRLFDLRADQELMTY--SHDNIICGITSVS 288
Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405
FS G+ + + D + +W+ V GH V
Sbjct: 289 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 326
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 83/221 (37%), Gaps = 21/221 (9%)
Query: 236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEY 293
L GH + + WG D ++ + SQD + +W++ + + WV + A + +
Sbjct: 62 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 121
Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----------PERLVSGSDDFTMFL 343
+ G D+ Y+ + R ++ G+ ++V+ S D T L
Sbjct: 122 YVACGGLDNICSIYNLKTREGNVRVSR--ELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 179
Query: 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403
W+ +Q T H V + +PD + S + D S KLW+ G F GH
Sbjct: 180 WDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 238
Query: 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL 444
+ I CF N + L+ AD L+
Sbjct: 239 DINAI------CFFPNGNAFATGSDDATCRLFDLRADQELM 273
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/340 (22%), Positives = 139/340 (40%), Gaps = 35/340 (10%)
Query: 71 LEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSA----TIAGHTEAVLSVAFSPDGRQLASG 126
L+ K + Q I PV R T+ GH + ++ + D R L S
Sbjct: 14 LKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSA 73
Query: 127 SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS- 185
S D + +WD T + +WV+ A++ G ++ G ++ +T + +
Sbjct: 74 SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133
Query: 186 --GNPLSGHKKWITGISWEPVHLNAPCRRF------VSASKDGDARIWDVSLRKCVICLS 237
L+GH +++ C RF V++S D +WD+ + +
Sbjct: 134 RVSRELAGHTGYLS------------CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 181
Query: 238 GHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA-LSTEYAL 295
GHT V + D ++ +G+ D + K+W+ +G + GH +N++ A
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKG-------NAPERLVSGSDDFTMFLWEPAV 348
TG+ D T + + + + N I G + L++G DDF +W+ A+
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD-AL 300
Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
+ GH V+ + + DG VA+ S+D +K+WN
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 117/278 (42%), Gaps = 35/278 (12%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDP-QTGKPSGNPLSGHKKWITGISWEPVH- 205
GH + + W D + LVS S+ G+L WD T K PL W+ ++ P
Sbjct: 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL--RSSWVMTCAYAPSGN 110
Query: 206 ------LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259
L+ C + +++G+ R+ R+ L+GHT ++C ++ D I T S
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRV----SRE----LAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL-RTGAFDHTGKQYSSPEEMKKAAL 318
D T +W+ G+ GH V SL+L+ + L +GA D + K + E M +
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222
Query: 319 ERY----NKI----KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLV---NHVY 367
+ N I GNA +GSDD T L++ ++ T H ++ V
Sbjct: 223 TGHESDINAICFFPNGNA---FATGSDDATCRLFDLRADQELMT--YSHDNIICGITSVS 277
Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405
FS G+ + + D + +W+ V GH V
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 83/221 (37%), Gaps = 21/221 (9%)
Query: 236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEY 293
L GH + + WG D ++ + SQD + +W++ + + WV + A + +
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----------PERLVSGSDDFTMFL 343
+ G D+ Y+ + R ++ G+ ++V+ S D T L
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSR--ELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403
W+ +Q T H V + +PD + S + D S KLW+ G F GH
Sbjct: 169 WDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL 444
+ I CF N + L+ AD L+
Sbjct: 228 DINAI------CFFPNGNAFATGSDDATCRLFDLRADQELM 262
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/340 (22%), Positives = 139/340 (40%), Gaps = 35/340 (10%)
Query: 71 LEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSA----TIAGHTEAVLSVAFSPDGRQLASG 126
L+ K + Q I PV R T+ GH + ++ + D R L S
Sbjct: 14 LKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSA 73
Query: 127 SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS- 185
S D + +WD T + +WV+ A++ G ++ G ++ +T + +
Sbjct: 74 SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133
Query: 186 --GNPLSGHKKWITGISWEPVHLNAPCRRF------VSASKDGDARIWDVSLRKCVICLS 237
L+GH +++ C RF V++S D +WD+ + +
Sbjct: 134 RVSRELAGHTGYLS------------CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 181
Query: 238 GHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA-LSTEYAL 295
GHT V + D ++ +G+ D + K+W+ +G + GH +N++ A
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKG-------NAPERLVSGSDDFTMFLWEPAV 348
TG+ D T + + + + N I G + L++G DDF +W+ A+
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD-AL 300
Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
+ GH V+ + + DG VA+ S+D +K+WN
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 117/278 (42%), Gaps = 35/278 (12%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDP-QTGKPSGNPLSGHKKWITGISWEPVH- 205
GH + + W D + L+S S+ G+L WD T K PL W+ ++ P
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL--RSSWVMTCAYAPSGN 110
Query: 206 ------LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259
L+ C + +++G+ R+ R+ L+GHT ++C ++ D I T S
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRV----SRE----LAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL-RTGAFDHTGKQYSSPEEMKKAAL 318
D T +W+ G+ GH V SL+L+ + L +GA D + K + E M +
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222
Query: 319 ERY----NKI----KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLV---NHVY 367
+ N I GNA +GSDD T L++ ++ T H ++ V
Sbjct: 223 TGHESDINAICFFPNGNA---FATGSDDATCRLFDLRADQELMT--YSHDNIICGITSVS 277
Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405
FS G+ + + D + +W+ V GH V
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 83/221 (37%), Gaps = 21/221 (9%)
Query: 236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEY 293
L GH + + WG D ++ + SQD + +W++ + + WV + A + +
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----------PERLVSGSDDFTMFL 343
+ G D+ Y+ + R ++ G+ ++V+ S D T L
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSR--ELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403
W+ +Q T H V + +PD + S + D S KLW+ G F GH
Sbjct: 169 WDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL 444
+ I CF N + L+ AD L+
Sbjct: 228 DINAI------CFFPNGNAFATGSDDATCRLFDLRADQELM 262
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 92/188 (48%), Gaps = 5/188 (2%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
+ GH+ V V S DG+ SGS D T+RLWDL T T + GH VL +A+S+D +
Sbjct: 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 141
Query: 164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223
+VSGS+ ++ W+ H +W++ + + P N+ VS D +
Sbjct: 142 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP---NSSNPIIVSCGWDKLVK 198
Query: 224 IWDVSLRKCVICLSGHTLAVTCVKWGGDGVI-YTGSQDCTIKVWETTQGKLIRELKGHGH 282
+W+++ K GHT + V DG + +G +D +W+ +GK + L G G
Sbjct: 199 VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GD 257
Query: 283 WVNSLALS 290
+N+L S
Sbjct: 258 IINALCFS 265
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 89/364 (24%), Positives = 154/364 (42%), Gaps = 73/364 (20%)
Query: 102 ATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDL-----NTQTPMFKCTGHKNWVLC 155
T+ GH V +A +P + S S D T+ +W L N P GH ++V
Sbjct: 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 91
Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
+ S+DG+ +SGS G L+ WD TG + GH K + ++ ++ R+ VS
Sbjct: 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTT-RRFVGHTKDVLSVA-----FSSDNRQIVS 145
Query: 216 ASKDGDARIWD-VSLRKCVICLSGHTLAVTCVKW---GGDGVIYTGSQDCTIKVWETTQG 271
S+D ++W+ + + K + H+ V+CV++ + +I + D +KVW
Sbjct: 146 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 205
Query: 272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331
KL GH ++N++ +S + +L
Sbjct: 206 KLKTNHIGHTGYLNTVTVSPDGSL------------------------------------ 229
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391
SG D LW+ K T G ++N + FSP+ W+ +A+ SIK+W+
Sbjct: 230 CASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNRYWLCAAT-GPSIKIWD-LE 285
Query: 392 GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS 451
GK + V +++ E+I + + C SL +WSAD + L +G D+
Sbjct: 286 GKII---------VDELKQEVI-------STSSKAEPPQCTSL-AWSADGQTLFAGYTDN 328
Query: 452 TLKV 455
++V
Sbjct: 329 LVRV 332
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 42/127 (33%), Gaps = 51/127 (40%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-----------HKNWVL 154
GHT + +V SPDG ASG D LWDLN ++ G ++ W L
Sbjct: 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYW-L 271
Query: 155 C---------------------------------------IAWSADGKHLVSGSKAGELQ 175
C +AWSADG+ L +G ++
Sbjct: 272 CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR 331
Query: 176 CWDPQTG 182
W G
Sbjct: 332 VWQVTIG 338
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 92/188 (48%), Gaps = 5/188 (2%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
+ GH+ V V S DG+ SGS D T+RLWDL T T + GH VL +A+S+D +
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 118
Query: 164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223
+VSGS+ ++ W+ H +W++ + + P N+ VS D +
Sbjct: 119 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP---NSSNPIIVSCGWDKLVK 175
Query: 224 IWDVSLRKCVICLSGHTLAVTCVKWGGDGVI-YTGSQDCTIKVWETTQGKLIRELKGHGH 282
+W+++ K GHT + V DG + +G +D +W+ +GK + L G G
Sbjct: 176 VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GD 234
Query: 283 WVNSLALS 290
+N+L S
Sbjct: 235 IINALCFS 242
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 89/364 (24%), Positives = 154/364 (42%), Gaps = 73/364 (20%)
Query: 102 ATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDL-----NTQTPMFKCTGHKNWVLC 155
T+ GH V +A +P + S S D T+ +W L N P GH ++V
Sbjct: 9 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 68
Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
+ S+DG+ +SGS G L+ WD TG + GH K + ++ ++ R+ VS
Sbjct: 69 VVISSDGQFALSGSWDGTLRLWDLTTGTTT-RRFVGHTKDVLSVA-----FSSDNRQIVS 122
Query: 216 ASKDGDARIWD-VSLRKCVICLSGHTLAVTCVKW---GGDGVIYTGSQDCTIKVWETTQG 271
S+D ++W+ + + K + H+ V+CV++ + +I + D +KVW
Sbjct: 123 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 182
Query: 272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331
KL GH ++N++ +S + +L
Sbjct: 183 KLKTNHIGHTGYLNTVTVSPDGSL------------------------------------ 206
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391
SG D LW+ K T G ++N + FSP+ W+ +A+ SIK+W+
Sbjct: 207 CASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNRYWLCAAT-GPSIKIWD-LE 262
Query: 392 GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS 451
GK + V +++ E+I + + C SL +WSAD + L +G D+
Sbjct: 263 GKII---------VDELKQEVI-------STSSKAEPPQCTSL-AWSADGQTLFAGYTDN 305
Query: 452 TLKV 455
++V
Sbjct: 306 LVRV 309
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 42/127 (33%), Gaps = 51/127 (40%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-----------HKNWVL 154
GHT + +V SPDG ASG D LWDLN ++ G ++ W L
Sbjct: 190 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYW-L 248
Query: 155 C---------------------------------------IAWSADGKHLVSGSKAGELQ 175
C +AWSADG+ L +G ++
Sbjct: 249 CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR 308
Query: 176 CWDPQTG 182
W G
Sbjct: 309 VWQVTIG 315
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/354 (22%), Positives = 148/354 (41%), Gaps = 31/354 (8%)
Query: 58 ISDHELLVPLGSYLEKHKVSVEKV---LSIVYQPQAVFRIRP----VNRCSATIAGHTEA 110
+ ++E L L S E K +E+ L V Q R+ V + T+ GH
Sbjct: 7 LHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNK 66
Query: 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK 170
VL + + D R++ S S D V +WD T T WV+ A++ G + G
Sbjct: 67 VLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGL 126
Query: 171 AGELQCWDPQTGKPSGN------PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224
+ + P T + N ++ H +++ S+ + + ++AS DG +
Sbjct: 127 DNKCSVY-PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-----QILTASGDGTCAL 180
Query: 225 WDVSLRKCVICLSGHTLAVTCVKWG---GDGVIYTGSQDCTIKVWETTQGKLIRELKGHG 281
WDV + + GH V C+ +G D VW+ G+ ++ + H
Sbjct: 181 WDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE 240
Query: 282 HWVNSLA-LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP-------ERLV 333
VNS+ + A +G+ D T + Y + + A + + I G + L
Sbjct: 241 SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLF 300
Query: 334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
+G +D+T+ +W+ + + + GH+ V+ + SPDG S S+D ++++W
Sbjct: 301 AGYNDYTINVWD-VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 114/281 (40%), Gaps = 28/281 (9%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207
GH N VLC+ W D + +VS S+ G++ WD T + ++ W+ ++ P
Sbjct: 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE-HAVTMPCTWVMACAYAPSGCA 120
Query: 208 APCRRFVSASKDGDARIW--------DVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259
C D ++ +++ +K + + + L+ C D I T S
Sbjct: 121 IAC-----GGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSA-CSFTNSDMQILTASG 174
Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALS---TEYALRTGAFDHTGKQYSSPEEMKKA 316
D T +W+ G+L++ GHG V L L+ T +G D +
Sbjct: 175 DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ 234
Query: 317 ALERYNKIKGN-----APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLV---NHVYF 368
A E + + + + SGSDD T L++ ++ + + ++ + V F
Sbjct: 235 AFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE--VAIYSKESIIFGASSVDF 292
Query: 369 SPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIR 409
S G+ + + D +I +W+ G V++ GH V +R
Sbjct: 293 SLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLR 333
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 93/235 (39%), Gaps = 27/235 (11%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEY 293
L GH V C+ W D I + SQD + VW++ + WV + A + +
Sbjct: 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC 119
Query: 294 ALRTGAFDHTGKQY----SSPEEM---KKAALERYNKIKG----NAPERLVSGSDDFTMF 342
A+ G D+ Y E M KK+ N + N+ ++++ S D T
Sbjct: 120 AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCA 179
Query: 343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPD--GQWVASASFDKSIKLWNGTTGKFVAVFRG 400
LW+ S Q GH V + +P G S DK +W+ +G+ V F
Sbjct: 180 LWDVE-SGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET 238
Query: 401 HVGPVYQIRFELIYCFRYPSN--FYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL 453
H V +R+ YPS F D + C LY AD + + SK+S +
Sbjct: 239 HESDVNSVRY-------YPSGDAFASGSDDATC-RLYDLRADREVAIY-SKESII 284
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 132/335 (39%), Gaps = 72/335 (21%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTT-----------VRLWD----------LNTQTPMFK 145
HT V V FS DG LA+G TT RL D LNT +
Sbjct: 63 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSS---- 118
Query: 146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
++ + +S DGK L +G++ ++ WD + K L GH++ I + + P
Sbjct: 119 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV-MILQGHEQDIYSLDYFP-- 175
Query: 206 LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIK 264
+ VS S D RIWD+ +C + LS T GDG I GS D ++
Sbjct: 176 ---SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR 232
Query: 265 VWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324
VW++ G L+ L +E TG D Y+ +
Sbjct: 233 VWDSETGFLVERL------------DSENESGTGHKDSV-----------------YSVV 263
Query: 325 KGNAPERLVSGSDDFTMFLWE------PAVSKQPKT-----RMTGHQQLVNHVYFSPDGQ 373
+ +VSGS D ++ LW + SK P + GH+ V V + + +
Sbjct: 264 FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE 323
Query: 374 WVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
++ S S D+ + W+ +G + + +GH V +
Sbjct: 324 YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 358
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 110/266 (41%), Gaps = 58/266 (21%)
Query: 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKA---------GELQCW---------DPQTGKP 184
+ K H + V C+ +S DG++L +G G L DP+
Sbjct: 57 LHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 116
Query: 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT 244
S +P S +I + + P + + ++D RIWD+ RK V+ L GH +
Sbjct: 117 SSSPSS--DLYIRSVCFSP-----DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY 169
Query: 245 CVKW--GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302
+ + GD ++ +GS D T+++W+ G+ SL LS E + T A
Sbjct: 170 SLDYFPSGDKLV-SGSGDRTVRIWDLRTGQC------------SLTLSIEDGVTTVAVSP 216
Query: 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
+Y I + +R V D T FL E S+ TGH+
Sbjct: 217 GDGKY----------------IAAGSLDRAVRVWDSETGFLVERLDSENESG--TGHKDS 258
Query: 363 VNHVYFSPDGQWVASASFDKSIKLWN 388
V V F+ DGQ V S S D+S+KLWN
Sbjct: 259 VYSVVFTRDGQSVVSGSLDRSVKLWN 284
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 89/211 (42%), Gaps = 24/211 (11%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
+ GH + + S+ + P G +L SGSGD TVR+WDL T + DGK
Sbjct: 161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK 220
Query: 164 HLVSGSKAGELQCWDPQTG------KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS 217
++ +GS ++ WD +TG +GHK + + + + VS S
Sbjct: 221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF-----TRDGQSVVSGS 275
Query: 218 KDGDARIWDVSLRK------------CVICLSGH-TLAVTCVKWGGDGVIYTGSQDCTIK 264
D ++W++ C + GH ++ D I +GS+D +
Sbjct: 276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 335
Query: 265 VWETTQGKLIRELKGHGHWVNSLALSTEYAL 295
W+ G + L+GH + V S+A++ +L
Sbjct: 336 FWDKKSGNPLLMLQGHRNSVISVAVANGSSL 366
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 20/157 (12%)
Query: 85 VYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL------- 137
V+ + F + ++ + + GH ++V SV F+ DG+ + SGS D +V+LW+L
Sbjct: 233 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 292
Query: 138 -----NTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP---L 189
N+ T GHK++VL +A + + ++++SGSK + WD K SGNP L
Sbjct: 293 DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD----KKSGNPLLML 348
Query: 190 SGHKKWITGIS-WEPVHLNAPCRRFVSASKDGDARIW 225
GH+ + ++ L F + S D ARIW
Sbjct: 349 QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 86/195 (44%), Gaps = 32/195 (16%)
Query: 99 RCSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNT-------QTPMFKCTGHK 150
+CS T++ + V +VA SP DG+ +A+GS D VR+WD T + TGHK
Sbjct: 198 QCSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK 256
Query: 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK---PSGNPLS--------GHKKWITGI 199
+ V + ++ DG+ +VSGS ++ W+ Q S P S GHK ++ +
Sbjct: 257 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV 316
Query: 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-------G 252
+ +S SKD WD ++ L GH +V V
Sbjct: 317 A-----TTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN 371
Query: 253 VIYTGSQDCTIKVWE 267
V TGS DC ++W+
Sbjct: 372 VFATGSGDCKARIWK 386
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 92/220 (41%), Gaps = 38/220 (17%)
Query: 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL----- 277
R DV L K + HT V CVK+ DG + T +V+ + G L+ L
Sbjct: 51 REIDVELHKSL----DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSA 106
Query: 278 --KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE-----------------MKKAAL 318
K + S + S++ +R+ F GK ++ E ++
Sbjct: 107 ANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQ 166
Query: 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVAS 377
+ Y+ + ++LVSGS D T+ +W+ + T + V V SP DG+++A+
Sbjct: 167 DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI--EDGVTTVAVSPGDGKYIAA 224
Query: 378 ASFDKSIKLWNGTTGKFVAVFR-------GHVGPVYQIRF 410
S D+++++W+ TG V GH VY + F
Sbjct: 225 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF 264
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 98/221 (44%), Gaps = 33/221 (14%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC--IAWSAD 161
++GH V ++ ++ G L SGS D TVR+WD+ GH + V C I +
Sbjct: 158 LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 162 GKHLVSGSKAGELQCWD-------PQTGK----------PSGNP-----LSGHKKWITGI 199
K++V+GS+ L W P G+ P NP L GH + +
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276
Query: 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGS 258
S H N VS S D +WDV+ KC+ LSGHT + + + + S
Sbjct: 277 SG---HGNI----VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS 329
Query: 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299
D TI++W+ G+L+ L+GH V L LS ++ + A
Sbjct: 330 MDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAA 370
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 118/269 (43%), Gaps = 42/269 (15%)
Query: 174 LQCWDPQTGKPSGNPLSGH-KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC 232
L+ W P L GH IT + +E ++ ++ + D R++D +K
Sbjct: 102 LKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYV-------ITGADDKMIRVYDSINKKF 154
Query: 233 VICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE 292
++ LSGH V +K+ G++ +GS D T++VW+ +G +GH V L + E
Sbjct: 155 LLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI-VE 213
Query: 293 YA----LRTGAFDHT---------------GKQ------YSSPEE------MKKAALERY 321
Y + TG+ D+T G++ + +PEE + + +
Sbjct: 214 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV 273
Query: 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381
+ G+ +VSGS D T+ +W+ A K ++GH + + + + SAS D
Sbjct: 274 RTVSGHG-NIVVSGSYDNTLIVWDVAQMKCLYI-LSGHTDRIYSTIYDHERKRCISASMD 331
Query: 382 KSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410
+I++W+ G+ + +GH V +R
Sbjct: 332 TTIRIWDLENGELMYTLQGHTALVGLLRL 360
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 11/173 (6%)
Query: 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD 161
+ GH +V +V S G + SGS D T+ +WD+ ++ +GH + + + +
Sbjct: 264 GVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE 321
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221
K +S S ++ WD + G+ L GH + G+ L + VSA+ DG
Sbjct: 322 RKRCISASMDTTIRIWDLENGELM-YTLQGHTA-LVGL------LRLSDKFLVSAAADGS 373
Query: 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLI 274
R WD + L+ + D ++ +GS++ ++ GKL+
Sbjct: 374 IRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSEN-QFNIYNLRSGKLV 425
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW 158
+C ++GHT+ + S + + ++ S S DTT+R+WDL M+ GH V +
Sbjct: 301 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 360
Query: 159 SADGKHLVSGSKAGELQCWDPQ 180
S K LVS + G ++ WD
Sbjct: 361 S--DKFLVSAAADGSIRGWDAN 380
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 305 KQYSSPEEMKKAAL---ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ- 360
+ + SP+ L ++Y K+ RL + F + W +T + GH
Sbjct: 63 ENFVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHMT 122
Query: 361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410
++ + F + +V + + DK I++++ KF+ GH G V+ +++
Sbjct: 123 SVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY 170
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 97/221 (43%), Gaps = 33/221 (14%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC--IAWSAD 161
++GH V ++ ++ G L SGS D TVR+WD+ GH + V C I +
Sbjct: 158 LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 162 GKHLVSGSKAGELQCWD-------PQTGK----------PSGNP-----LSGHKKWITGI 199
K++V+GS+ L W P G+ P NP L GH + +
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV 276
Query: 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGS 258
S H N VS S D +WDV+ KC+ LSGHT + + + + S
Sbjct: 277 SG---HGNI----VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISAS 329
Query: 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299
D TI++W+ G+L L+GH V L LS ++ + A
Sbjct: 330 XDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAA 370
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 113/268 (42%), Gaps = 40/268 (14%)
Query: 174 LQCWDPQTGKPSGNPLSGHK-KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC 232
L+ W P L GH IT + +E ++ ++ + D R++D +K
Sbjct: 102 LKNWYNPKFVPQRTTLRGHXTSVITCLQFEDNYV-------ITGADDKXIRVYDSINKKF 154
Query: 233 VICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE 292
++ LSGH V +K+ G++ +GS D T++VW+ +G +GH V L + E
Sbjct: 155 LLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI-VE 213
Query: 293 YA----LRTGAFDHTGKQYSSPEE--MKKAALERYNKIKGNAPER--------------- 331
Y + TG+ D+T + P+E + E + + PE
Sbjct: 214 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASV 273
Query: 332 ---------LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VSGS D T+ +W+ A K ++GH + + + + SAS D
Sbjct: 274 RTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYI-LSGHTDRIYSTIYDHERKRCISASXDT 332
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRF 410
+I++W+ G+ +GH V +R
Sbjct: 333 TIRIWDLENGELXYTLQGHTALVGLLRL 360
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 11/173 (6%)
Query: 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD 161
+ GH +V +V S G + SGS D T+ +WD+ ++ +GH + + + +
Sbjct: 264 GVLRGHXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHE 321
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221
K +S S ++ WD + G+ L GH + G+ L + VSA+ DG
Sbjct: 322 RKRCISASXDTTIRIWDLENGELX-YTLQGHTA-LVGL------LRLSDKFLVSAAADGS 373
Query: 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLI 274
R WD + L+ + D ++ +GS++ ++ GKL+
Sbjct: 374 IRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSEN-QFNIYNLRSGKLV 425
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW 158
+C ++GHT+ + S + + ++ S S DTT+R+WDL + GH V +
Sbjct: 301 KCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRL 360
Query: 159 SADGKHLVSGSKAGELQCWDPQ 180
S K LVS + G ++ WD
Sbjct: 361 S--DKFLVSAAADGSIRGWDAN 380
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 12/195 (6%)
Query: 92 FRIRPVNRCSA----TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC- 146
FRIR N + H + + S+A P + SGS D TV+LW+ + +
Sbjct: 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Query: 147 TGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
GH+++V+C+A++ D SG ++ W P+ +G ++ + + + P+
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 206 LNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTI 263
P + + ++AS D +IWD + CV L GH V+ + +I +GS+D T+
Sbjct: 196 ---PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 264 KVWETTQGKLIRELK 278
K+W ++ K+ + L
Sbjct: 253 KIWNSSTYKVEKTLN 267
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 16/165 (9%)
Query: 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEYALRTGAFDHTGKQYSSPEE 312
I GS D I+V+ G+ + + + H ++ S+A+ T+ + +G+ D T K ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 313 MKKAALERYNK----------IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
ALE+ + P SG D T+ +W S T TG ++
Sbjct: 130 W---ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 363 VNHV--YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405
VN+V Y PD ++ +AS D +IK+W+ T VA GH+ V
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 21/196 (10%)
Query: 214 VSASKDGDARIWDVSLRKCVICLSGH-----TLAVTCVKWGGDGVIYTGSQDCTIKVWE- 267
+ S D R+++ + + V+ H ++AV K + +GS D T+K+W
Sbjct: 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK----PYVLSGSDDLTVKLWNW 126
Query: 268 TTQGKLIRELKGHGHWVNSLALSTE--YALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325
L + +GH H+V +A + + +G D T K +S + L +
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 326 GN------APER--LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS 377
N P++ +++ SDD T+ +W+ +K + GH V+ F P + S
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 378 ASFDKSIKLWNGTTGK 393
S D ++K+WN +T K
Sbjct: 246 GSEDGTLKIWNSSTYK 261
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/240 (18%), Positives = 86/240 (35%), Gaps = 44/240 (18%)
Query: 126 GSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185
GS D +R+++ NT + H +++ IA +++SGS ++ W+ +
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVT 244
GH+ ++ +++ P F S D ++W + L+ G V
Sbjct: 133 EQTFEGHEHFVMCVAFNP----KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 245 CVKW---GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
V + + T S D TIK+W+ + L+GH V+ +
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI------ 242
Query: 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361
++SGS+D T+ +W + K KT G ++
Sbjct: 243 ------------------------------IISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 12/195 (6%)
Query: 92 FRIRPVNRCSA----TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC- 146
FRIR N + H + + S+A P + SGS D TV+LW+ + +
Sbjct: 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Query: 147 TGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
GH+++V+C+A++ D SG ++ W P+ +G ++ + + + P+
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 206 LNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTI 263
P + + ++AS D +IWD + CV L GH V+ + +I +GS+D T+
Sbjct: 196 ---PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 264 KVWETTQGKLIRELK 278
K+W ++ K+ + L
Sbjct: 253 KIWNSSTYKVEKTLN 267
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 16/165 (9%)
Query: 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEYALRTGAFDHTGKQYSSPEE 312
I GS D I+V+ G+ + + + H ++ S+A+ T+ + +G+ D T K ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 313 MKKAALERYNK----------IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
ALE+ + P SG D T+ +W S T TG ++
Sbjct: 130 W---ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 363 VNHV--YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405
VN+V Y PD ++ +AS D +IK+W+ T VA GH+ V
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 21/196 (10%)
Query: 214 VSASKDGDARIWDVSLRKCVICLSGH-----TLAVTCVKWGGDGVIYTGSQDCTIKVWE- 267
+ S D R+++ + + V+ H ++AV K + +GS D T+K+W
Sbjct: 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK----PYVLSGSDDLTVKLWNW 126
Query: 268 TTQGKLIRELKGHGHWVNSLALSTE--YALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325
L + +GH H+V +A + + +G D T K +S + L +
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 326 GN------APER--LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS 377
N P++ +++ SDD T+ +W+ +K + GH V+ F P + S
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 378 ASFDKSIKLWNGTTGK 393
S D ++K+WN +T K
Sbjct: 246 GSEDGTLKIWNSSTYK 261
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/240 (18%), Positives = 86/240 (35%), Gaps = 44/240 (18%)
Query: 126 GSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185
GS D +R+++ NT + H +++ IA +++SGS ++ W+ +
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVT 244
GH+ ++ +++ P F S D ++W + L+ G V
Sbjct: 133 EQTFEGHEHFVMCVAFNP----KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 245 CVKW---GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
V + + T S D TIK+W+ + L+GH V+ +
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI------ 242
Query: 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361
++SGS+D T+ +W + K KT G ++
Sbjct: 243 ------------------------------IISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 12/194 (6%)
Query: 92 FRIRPVNRCS----ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC- 146
FRIR N + H + + S+A P + SGS D TV+LW+ + +
Sbjct: 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Query: 147 TGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
GH+++V+C+A++ D SG ++ W P+ +G ++ + + + P+
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 206 LNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTI 263
P + + ++AS D +IWD + CV L GH V+ + +I +GS+D T+
Sbjct: 196 ---PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 264 KVWETTQGKLIREL 277
K+W ++ K+ + L
Sbjct: 253 KIWNSSTYKVEKTL 266
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 16/165 (9%)
Query: 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEYALRTGAFDHTGKQYSSPEE 312
I GS D I+V+ G+ + + + H ++ S+A+ T+ + +G+ D T K ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 313 MKKAALERYNK----------IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
ALE+ + P SG D T+ +W S T TG ++
Sbjct: 130 W---ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 363 VNHV--YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405
VN+V Y PD ++ +AS D +IK+W+ T VA GH+ V
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 21/197 (10%)
Query: 213 FVSASKDGDARIWDVSLRKCVICLSGH-----TLAVTCVKWGGDGVIYTGSQDCTIKVWE 267
+ S D R+++ + + V+ H ++AV K + +GS D T+K+W
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK----PYVLSGSDDLTVKLWN 125
Query: 268 -TTQGKLIRELKGHGHWVNSLALSTE--YALRTGAFDHTGKQYS----SPEEMKKAALER 320
L + +GH H+V +A + + +G D T K +S +P ER
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 321 YNKIKGNAP----ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA 376
P +++ SDD T+ +W+ +K + GH V+ F P +
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 377 SASFDKSIKLWNGTTGK 393
S S D ++K+WN +T K
Sbjct: 245 SGSEDGTLKIWNSSTYK 261
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/240 (18%), Positives = 87/240 (36%), Gaps = 44/240 (18%)
Query: 126 GSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185
GS D +R+++ NT + H +++ IA +++SGS ++ W+ +
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVT 244
GH+ ++ +++ P + F S D ++W + L+ G V
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPST----FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 245 CVKW---GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
V + + T S D TIK+W+ + L+GH V+ +
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI------ 242
Query: 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361
++SGS+D T+ +W + K KT G ++
Sbjct: 243 ------------------------------IISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 12/194 (6%)
Query: 92 FRIRPVNRCS----ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC- 146
FRIR N + H + + S+A P + SGS D TV+LW+ + +
Sbjct: 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Query: 147 TGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
GH+++V+C+A++ D SG ++ W P+ +G ++ + + + P+
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 206 LNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTI 263
P + + ++AS D +IWD + CV L GH V+ + +I +GS+D T+
Sbjct: 196 ---PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 264 KVWETTQGKLIREL 277
K+W ++ K+ + L
Sbjct: 253 KIWNSSTYKVEKTL 266
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 16/165 (9%)
Query: 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEYALRTGAFDHTGKQYSSPEE 312
I GS D I+V+ G+ + + + H ++ S+A+ T+ + +G+ D T K ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 313 MKKAALERYNK----------IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
ALE+ + P SG D T+ +W S T TG ++
Sbjct: 130 W---ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 363 VNHV--YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405
VN+V Y PD ++ +AS D +IK+W+ T VA GH+ V
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 21/197 (10%)
Query: 213 FVSASKDGDARIWDVSLRKCVICLSGH-----TLAVTCVKWGGDGVIYTGSQDCTIKVWE 267
+ S D R+++ + + V+ H ++AV K + +GS D T+K+W
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK----PYVLSGSDDLTVKLWN 125
Query: 268 -TTQGKLIRELKGHGHWVNSLALSTE--YALRTGAFDHTGKQYS----SPEEMKKAALER 320
L + +GH H+V +A + + +G D T K +S +P ER
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 321 YNKIKGNAP----ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA 376
P +++ SDD T+ +W+ +K + GH V+ F P +
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 377 SASFDKSIKLWNGTTGK 393
S S D ++K+WN +T K
Sbjct: 245 SGSEDGTLKIWNSSTYK 261
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/240 (18%), Positives = 87/240 (36%), Gaps = 44/240 (18%)
Query: 126 GSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185
GS D +R+++ NT + H +++ IA +++SGS ++ W+ +
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVT 244
GH+ ++ +++ P + F S D ++W + L+ G V
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPST----FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 245 CVKW---GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
V + + T S D TIK+W+ + L+GH V+ +
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI------ 242
Query: 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361
++SGS+D T+ +W + K KT G ++
Sbjct: 243 ------------------------------IISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 7/158 (4%)
Query: 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK 170
+LS+A+SPDG+ LASG+ D + ++D+ T + GH + + +S D + LV+ S
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 171 AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR 230
G ++ +D Q +G LSGH W+ +++ P FVS+S D ++WDV R
Sbjct: 227 DGYIKIYDVQHANLAGT-LSGHASWVLNVAFCP-----DDTHFVSSSSDKSVKVWDVGTR 280
Query: 231 KCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWE 267
CV H V VK+ G+G I + D I +++
Sbjct: 281 TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 7/188 (3%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
++ GH V+SV S AS S D +RLWDL + +A+S D
Sbjct: 75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 134
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
++L +G+ G++ + ++GK L K+I I++ P + S + DG
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKE-YSLDTRGKFILSIAYSP-----DGKYLASGAIDGII 188
Query: 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHG 281
I+D++ K + L GH + + + + D ++ T S D IK+++ L L GH
Sbjct: 189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 248
Query: 282 HWVNSLAL 289
WV ++A
Sbjct: 249 SWVLNVAF 256
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 20/159 (12%)
Query: 81 VLSIVYQPQA-------------VFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGS 127
+LSI Y P +F I + T+ GH + S+ FSPD + L + S
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDI-ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS 225
Query: 128 GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187
D ++++D+ +GH +WVL +A+ D H VS S ++ WD T + +
Sbjct: 226 DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT-RTCVH 284
Query: 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD 226
H+ + G+ + N + VS D + I+D
Sbjct: 285 TFFDHQDQVWGVKY-----NGNGSKIVSVGDDQEIHIYD 318
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 115/290 (39%), Gaps = 57/290 (19%)
Query: 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG 168
E + SVA+ +G LA G+ V+LWD+ Q + T H V ++W + L SG
Sbjct: 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSG 205
Query: 169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
S++G + D + + LSGH + + G+ W P R S D +W +
Sbjct: 206 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNVWPSA 260
Query: 229 LRKC----VICLSGHTLAVTCVKWG--GDGVIYT--GSQDCTIKVWETTQGKLIRELKGH 280
+ + + H AV V W V+ T G+ D I++W G + + H
Sbjct: 261 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 320
Query: 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD--D 338
V S+ S Y + L+SG
Sbjct: 321 SQ-VCSILWSPHY------------------------------------KELISGHGFAQ 343
Query: 339 FTMFLWE-PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
+ +W+ P ++K + GH V + SPDG VASA+ D++++LW
Sbjct: 344 NQLVIWKYPTMAK--VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 17/184 (9%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLW----DLNTQTPMFKCTGH 149
+R AT++GH++ V + ++PDGR LASG D V +W P+ T H
Sbjct: 216 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 275
Query: 150 KNWVLCIAWSADGKHLVS---GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206
+ V +AW ++++ G+ ++ W+ +G + + H + + I W P +
Sbjct: 276 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-CLSAVDAHSQ-VCSILWSPHY- 332
Query: 207 NAPCRRFVSAS--KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTI 263
+ +S IW V L GHT V + DG + + + D T+
Sbjct: 333 ----KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETL 388
Query: 264 KVWE 267
++W
Sbjct: 389 RLWR 392
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%)
Query: 87 QPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLW 135
Q Q V P A + GHT VLS+ SPDG +AS + D T+RLW
Sbjct: 343 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/171 (19%), Positives = 63/171 (36%), Gaps = 43/171 (25%)
Query: 243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
++ V W +G + G+ +++W+ Q K +R + H V SL+ ++
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYI-------- 201
Query: 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361
L SGS + + V++ ++GH Q
Sbjct: 202 ------------------------------LSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 231
Query: 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF----VAVFRGHVGPVYQI 408
V + ++PDG+ +AS D + +W G+ + F H G V +
Sbjct: 232 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 282
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 115/290 (39%), Gaps = 57/290 (19%)
Query: 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG 168
E + SVA+ +G LA G+ V+LWD+ Q + T H V ++W + L SG
Sbjct: 159 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSG 216
Query: 169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
S++G + D + + LSGH + + G+ W P R S D +W +
Sbjct: 217 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNVWPSA 271
Query: 229 LRKC----VICLSGHTLAVTCVKWG--GDGVIYT--GSQDCTIKVWETTQGKLIRELKGH 280
+ + + H AV V W V+ T G+ D I++W G + + H
Sbjct: 272 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 331
Query: 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD--D 338
V S+ S Y + L+SG
Sbjct: 332 SQ-VCSILWSPHY------------------------------------KELISGHGFAQ 354
Query: 339 FTMFLWE-PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
+ +W+ P ++K + GH V + SPDG VASA+ D++++LW
Sbjct: 355 NQLVIWKYPTMAK--VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 17/184 (9%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLW----DLNTQTPMFKCTGH 149
+R AT++GH++ V + ++PDGR LASG D V +W P+ T H
Sbjct: 227 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 286
Query: 150 KNWVLCIAWSADGKHLVS---GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206
+ V +AW ++++ G+ ++ W+ +G + + H + + I W P +
Sbjct: 287 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-CLSAVDAHSQ-VCSILWSPHY- 343
Query: 207 NAPCRRFVSAS--KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTI 263
+ +S IW V L GHT V + DG + + + D T+
Sbjct: 344 ----KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETL 399
Query: 264 KVWE 267
++W
Sbjct: 400 RLWR 403
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%)
Query: 87 QPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLW 135
Q Q V P A + GHT VLS+ SPDG +AS + D T+RLW
Sbjct: 354 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/171 (19%), Positives = 63/171 (36%), Gaps = 43/171 (25%)
Query: 243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
++ V W +G + G+ +++W+ Q K +R + H V SL+ ++
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYI-------- 212
Query: 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361
L SGS + + V++ ++GH Q
Sbjct: 213 ------------------------------LSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 242
Query: 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF----VAVFRGHVGPVYQI 408
V + ++PDG+ +AS D + +W G+ + F H G V +
Sbjct: 243 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 293
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 113/291 (38%), Gaps = 49/291 (16%)
Query: 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH-LVSGS 169
V SV +S DG L+ G G+ V ++D+ +QT + GH+ V C++W+ +H L SGS
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN---RHVLSSGS 193
Query: 170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL 229
++G + D + L GH + G++W L + S D +IWD
Sbjct: 194 RSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-----QLASGGNDNVVQIWDARS 248
Query: 230 RKCVICLSGHTLAVTCVKWG--GDGVIYT--GSQDCTIKVWETTQGKLIRELKGHGHWVN 285
+ H AV V W ++ T G+ D I W G + + G V
Sbjct: 249 SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA-GSQVT 307
Query: 286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE 345
SL S S E M G D + +W
Sbjct: 308 SLIWSPH----------------SKEIMS------------------THGFPDNNLSIWS 333
Query: 346 PAVSKQPK-TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395
+ S K + H V + SPDG+ +++A+ D+++K W G V
Sbjct: 334 YSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 15/191 (7%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
+R N T+ GH+ V +A+ DG QLASG D V++WD + P F T H V
Sbjct: 203 VRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAV 262
Query: 154 LCIAWSADGKHLVS---GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPC 210
+AW +L++ G+ ++ W+ TG +G + +T + W P
Sbjct: 263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ--VTSLIWSP-----HS 315
Query: 211 RRFVSAS--KDGDARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKV 265
+ +S D + IW S + + H V DG ++ T + D +K
Sbjct: 316 KEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKF 375
Query: 266 WETTQGKLIRE 276
W G ++
Sbjct: 376 WRVYDGDHVKR 386
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 117/290 (40%), Gaps = 57/290 (19%)
Query: 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG 168
E + SVA+ +G LA G+ V+LWD+ Q + T H V ++W++ L SG
Sbjct: 68 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS--YILSSG 125
Query: 169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
S++G + D + + LSGH + + G+ W P R S D +W +
Sbjct: 126 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNVWPSA 180
Query: 229 LRKC----VICLSGHTLAVTCVKW--GGDGVIYT--GSQDCTIKVWETTQGKLIRELKGH 280
+ + + H AV V W V+ T G+ D I++W G + + H
Sbjct: 181 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 240
Query: 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD--D 338
V S+ S Y + L+SG
Sbjct: 241 SQ-VCSILWSPHY------------------------------------KELISGHGFAQ 263
Query: 339 FTMFLWE-PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
+ +W+ P ++K + + GH V + SPDG VASA+ D++++LW
Sbjct: 264 NQLVIWKYPTMAKVAE--LKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 17/184 (9%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLW----DLNTQTPMFKCTGH 149
+R AT++GH++ V + ++PDGR LASG D V +W P+ T H
Sbjct: 136 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 195
Query: 150 KNWVLCIAWSADGKHLVS---GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206
+ V +AW ++++ G+ ++ W+ +G + + H + + I W P +
Sbjct: 196 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-CLSAVDAHSQ-VCSILWSPHY- 252
Query: 207 NAPCRRFVSAS--KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTI 263
+ +S IW V L GHT V + DG + + + D T+
Sbjct: 253 ----KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETL 308
Query: 264 KVWE 267
++W
Sbjct: 309 RLWR 312
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%)
Query: 87 QPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLW 135
Q Q V P A + GHT VLS+ SPDG +AS + D T+RLW
Sbjct: 263 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/173 (18%), Positives = 69/173 (39%), Gaps = 43/173 (24%)
Query: 243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
++ V W +G + G+ +++W+ Q K +R + H V SL+ ++ Y L +G+
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS-YILSSGS-- 126
Query: 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361
++ ++ ++ V++ ++GH Q
Sbjct: 127 -------------RSGHIHHHDVR----------------------VAEHHVATLSGHSQ 151
Query: 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF----VAVFRGHVGPVYQIRF 410
V + ++PDG+ +AS D + +W G+ + F H G V + +
Sbjct: 152 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 204
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 85/338 (25%), Positives = 125/338 (36%), Gaps = 70/338 (20%)
Query: 148 GHKNWVLCIAWSADGKHLV-SGSKAGELQCW-----DPQTGKPSGNPLSGHKKWITGISW 201
GH WV +A SA +L+ S S+ L W D + G P GH +
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV-RSFKGHSHIV----- 68
Query: 202 EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD 260
+ L A +SAS D R+WDV+ + GH V V +I +GS+D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320
TIKVW T +G+ + L GH WV+ + +
Sbjct: 129 KTIKVW-TIKGQCLATLLGHNDWVSQVRVVP----------------------------- 158
Query: 321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380
N+ + ++S +D + W Q + GH +N + SPDG +ASA
Sbjct: 159 -NEKADDDSVTIISAGNDKMVKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL------------IYCFRYPSNFYCVVDM 428
D I LWN K + V+ + F I F Y V D+
Sbjct: 217 DGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQ-YLVDDL 274
Query: 429 SCCMSLYS-----------WSADSRLLLSGSKDSTLKV 455
+ YS WSAD + L +G D+ ++V
Sbjct: 275 RPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRV 312
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 5/187 (2%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL 165
GH+ V + DG S S D T+RLWD+ T + GHK+ V+ + +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH-LNAPCRRFVSASKDGDARI 224
+SGS+ ++ W + G+ L GH W++ + P + +SA D +
Sbjct: 123 ISGSRDKTIKVWTIK-GQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 225 WDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHW 283
W+++ + GH + + DG +I + +D I +W K + L
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE- 239
Query: 284 VNSLALS 290
V SLA S
Sbjct: 240 VFSLAFS 246
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 80/193 (41%), Gaps = 35/193 (18%)
Query: 235 CLSGHTLAVTCV--KWGGDGVIYTGSQDCTIKVWETTQ-----GKLIRELKGHGHWVNSL 287
L GH VT + G ++ + S+D T+ W+ T G +R KGH H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 288 ALSTE--YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE-----------RLVS 334
L+ + YAL + ++D T + + A E Y + G+ + ++S
Sbjct: 72 TLTADGAYAL-SASWDKTLRLWDV------ATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP------DGQWVASASFDKSIKLWN 388
GS D T+ +W + Q + GH V+ V P D + SA DK +K WN
Sbjct: 125 GSRDKTIKVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 389 GTTGKFVAVFRGH 401
+ A F GH
Sbjct: 183 LNQFQIEADFIGH 195
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 27/186 (14%)
Query: 99 RCSATIAGHTEAVLSVAFSP------DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW 152
+C AT+ GH + V V P D + S D V+ W+LN GH +
Sbjct: 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN 198
Query: 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNA--PC 210
+ + S DG + S K GE+ W+ L+ K T + + V A P
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLWN----------LAAKKAMYTLSAQDEVFSLAFSPN 248
Query: 211 RRFVSASKDGDARIWDVSLRKCVICL----SGHTLA----VTCVKWGGDG-VIYTGSQDC 261
R +++A+ +++ + + V L +G++ A + W DG ++ G D
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDN 308
Query: 262 TIKVWE 267
I+VW+
Sbjct: 309 VIRVWQ 314
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ------TPMFK--CTGHKNWVLCIAWSA 160
+ V S+AFSP+ LA+ + T ++++ L+ Q P F + + +AWSA
Sbjct: 238 DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSA 296
Query: 161 DGKHLVSGSKAGELQCWDPQTGK 183
DG+ L +G ++ W T
Sbjct: 297 DGQTLFAGYTDNVIRVWQVMTAN 319
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 19/80 (23%)
Query: 79 EKVLSIVYQPQ------------AVFRIRP---VNRCSATIAGHTEAV----LSVAFSPD 119
++V S+ + P VF + P V+ AG++ A +S+A+S D
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSAD 297
Query: 120 GRQLASGSGDTTVRLWDLNT 139
G+ L +G D +R+W + T
Sbjct: 298 GQTLFAGYTDNVIRVWQVMT 317
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/321 (20%), Positives = 131/321 (40%), Gaps = 40/321 (12%)
Query: 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS 159
C T+ GH+ V S+ ++P+ + S S D + +W+ T H WV+ A++
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 160 ADGKHLVSGSKAGELQCW------DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+G+ + G + D P L+GHK + + + P R
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET----RL 173
Query: 214 VSASKDGDARIWDVSLRKCVICL-----SGHTLAVTCVKWG--GDGVIYTGSQDCTIKVW 266
++ S D +WDV+ + + SGHT V + + +GS D T+++W
Sbjct: 174 ITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLW 233
Query: 267 E-TTQGKLIRELKGHGHWVNSLALSTE---------------YALRTGAFDHTGKQYSSP 310
+ + +R GH +NS+ + + +RTG H + Y+
Sbjct: 234 DLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNRE 290
Query: 311 EEMKKAALERYNKIKGNAPERLV-SGSDDFTMFLWEPAVSK---QPKTRMTGHQQLVNHV 366
+ L + + RL+ +G + ++W+ +++ T H+ ++ +
Sbjct: 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL 350
Query: 367 YFSPDGQWVASASFDKSIKLW 387
S DG + + S+DK++K+W
Sbjct: 351 GLSSDGSALCTGSWDKNLKIW 371
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 107/266 (40%), Gaps = 57/266 (21%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH-- 205
GH V + W+ + +VS S+ G L W+ T + + + + H W+ ++ P
Sbjct: 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKT-HAIKLHCPWVMECAFAPNGQS 122
Query: 206 -----LNAPCRRF---VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--GVIY 255
L++ C F A +DG+ + V L+GH + ++ D +
Sbjct: 123 VACGGLDSACSIFNLSSQADRDGNMPVSRV--------LTGHKGYASSCQYVPDQETRLI 174
Query: 256 TGSQDCTIKVWETTQGKLIRELKGH---GHWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312
TGS D T +W+ T G+ I GH + L+LS
Sbjct: 175 TGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS---------------------- 212
Query: 313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG 372
N + N +SGS D T+ LW+ ++ + GH+ +N V F PDG
Sbjct: 213 --------INSLNANM---FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG 261
Query: 373 QWVASASFDKSIKLWNGTTGKFVAVF 398
Q + S D + +L++ TG + V+
Sbjct: 262 QRFGTGSDDGTCRLFDMRTGHQLQVY 287
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 91 VFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT--QTPMFKCTG 148
++ +R +R T GH + SV F PDG++ +GS D T RL+D+ T Q ++
Sbjct: 232 LWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP 291
Query: 149 HKN-----WVLCIAWSADGKHLVSGSKAGELQCWD 178
+N V +A+S G+ L +G G+ WD
Sbjct: 292 DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD 326
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 356 MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410
+ GH V + ++P+ W+ SAS D + +WN T + + H V + F
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAF 116
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 84/194 (43%), Gaps = 8/194 (4%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
+ GH V +A S + S S D T+RLWDL T T + GH++ V +A+S D +
Sbjct: 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR 131
Query: 164 HLVSGSKAGELQCWDPQTG-KPSGNPLSGHKKWITGISWEPVHLNAPCRR-----FVSAS 217
++S E++ W+ K S H W++ + + P+ +A + F S
Sbjct: 132 QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191
Query: 218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRE 276
DG ++W+ + + H V + +G I TG +D + +W+ +
Sbjct: 192 WDGRLKVWNTNFQ-IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR 250
Query: 277 LKGHGHWVNSLALS 290
G +N +A +
Sbjct: 251 EFDAGSTINQIAFN 264
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 75/327 (22%), Positives = 134/327 (40%), Gaps = 79/327 (24%)
Query: 94 IRPVNRCSATIAGHTEAVLSV--AFS----PDGRQLASGSGDTTVRLWDLNTQ------- 140
I+ V R + GH++ V S+ FS D L SGS D TV +W L +
Sbjct: 9 IQVVKR--GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFG 66
Query: 141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGIS 200
P TGH ++V +A S + +S S L+ WD +TG + GH+ + ++
Sbjct: 67 IPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG-TTYKRFVGHQSEVYSVA 125
Query: 201 WEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---GHTLAVTCVKWGGDGVIYTG 257
+ P + R+ +SA + + ++W++ L +C + H+ V+CV++ ++ +
Sbjct: 126 FSPDN-----RQILSAGAEREIKLWNI-LGECKFSSAEKENHSDWVSCVRYS--PIMKSA 177
Query: 258 SQ-------------DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTG 304
++ D +KVW T ++ K H VN L++S G
Sbjct: 178 NKVQPFAPYFASVGWDGRLKVW-NTNFQIRYTFKAHESNVNHLSISP-----------NG 225
Query: 305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN 364
K + +G D + +W+ P+ R +N
Sbjct: 226 K-------------------------YIATGGKDKKLLIWDILNLTYPQ-REFDAGSTIN 259
Query: 365 HVYFSPDGQWVASASFDKSIKLWNGTT 391
+ F+P QWVA + D+ +K++N T
Sbjct: 260 QIAFNPKLQWVAVGT-DQGVKIFNLMT 285
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 332 LVSGSDDFTMFLWEPAVSKQ------PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385
L+SGS D T+ +W+ +Q P +TGH V+ + S + + S+S+DK+++
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
Query: 386 LWNGTTGKFVAVFRGHVGPVYQIRF 410
LW+ TG F GH VY + F
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAF 126
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 135/366 (36%), Gaps = 78/366 (21%)
Query: 103 TIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCI 156
T+ GH V S+A S L S S D T+ W L P+ GH + V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
+ADG + +S S L+ WD TG+ + GHK + V ++ +S
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVM-----SVDIDKKASMIISG 125
Query: 217 SKDGDARIWDVSLRKCVICLSGHTLAVTCV------KWGGDGV-IYTGSQDCTIKVWETT 269
S+D ++W + +C+ L GH V+ V K D V I + D +K W
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
Q ++ + GH +N+L S + L
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTL---------------------------------- 210
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
+ S D + LW A K T Q V + FSP+ W+A+A
Sbjct: 211 --IASAGKDGEIMLWNLAAKKAMYT--LSAQDEVFSLAFSPNRYWLAAA----------- 255
Query: 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449
T + VF + P Y L+ R Y +SL +WSAD + L +G
Sbjct: 256 -TATGIKVFS--LDPQY-----LVDDLRPEFAGYSKAAEPHAVSL-AWSADGQTLFAGYT 306
Query: 450 DSTLKV 455
D+ ++V
Sbjct: 307 DNVIRV 312
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 27/186 (14%)
Query: 99 RCSATIAGHTEAVLSVAFSP------DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW 152
+C AT+ GH + V V P D + S D V+ W+LN GH +
Sbjct: 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN 198
Query: 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNA--PC 210
+ + S DG + S K GE+ W+ L+ K T + + V A P
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLWN----------LAAKKAMYTLSAQDEVFSLAFSPN 248
Query: 211 RRFVSASKDGDARIWDVSLRKCVICL----SGHTLA----VTCVKWGGDG-VIYTGSQDC 261
R +++A+ +++ + + V L +G++ A + W DG ++ G D
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308
Query: 262 TIKVWE 267
I+VW+
Sbjct: 309 VIRVWQ 314
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 135/366 (36%), Gaps = 78/366 (21%)
Query: 103 TIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCI 156
T+ GH V S+A S L S S D T+ W L P+ GH + V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
+ADG + +S S L+ WD TG+ + GHK + V ++ +S
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVM-----SVDIDKKASMIISG 125
Query: 217 SKDGDARIWDVSLRKCVICLSGHTLAVTCV------KWGGDGV-IYTGSQDCTIKVWETT 269
S+D ++W + +C+ L GH V+ V K D V I + D +K W
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
Q ++ + GH +N+L S + L
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTL---------------------------------- 210
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
+ S D + LW A K T Q V + FSP+ W+A+A
Sbjct: 211 --IASAGKDGEIMLWNLAAKKAMYT--LSAQDEVFSLAFSPNRYWLAAA----------- 255
Query: 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449
T + VF + P Y L+ R Y +SL +WSAD + L +G
Sbjct: 256 -TATGIKVFS--LDPQY-----LVDDLRPEFAGYSKAAEPHAVSL-AWSADGQTLFAGYT 306
Query: 450 DSTLKV 455
D+ ++V
Sbjct: 307 DNVIRV 312
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 27/186 (14%)
Query: 99 RCSATIAGHTEAVLSVAFSP------DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW 152
+C AT+ GH + V V P D + S D V+ W+LN GH +
Sbjct: 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN 198
Query: 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNA--PC 210
+ + S DG + S K GE+ W+ L+ K T + + V A P
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLWN----------LAAKKAMYTLSAQDEVFSLAFSPN 248
Query: 211 RRFVSASKDGDARIWDVSLRKCVICL----SGHTLA----VTCVKWGGDG-VIYTGSQDC 261
R +++A+ +++ + + V L +G++ A + W DG ++ G D
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308
Query: 262 TIKVWE 267
I+VW+
Sbjct: 309 VIRVWQ 314
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ------TPMFK--CTGHKNWVLCIAWSA 160
+ V S+AFSP+ LA+ + T ++++ L+ Q P F + + +AWSA
Sbjct: 238 DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA 296
Query: 161 DGKHLVSGSKAGELQCWDPQTG 182
DG+ L +G ++ W T
Sbjct: 297 DGQTLFAGYTDNVIRVWQVMTA 318
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 19/80 (23%)
Query: 79 EKVLSIVYQPQ------------AVFRIRP---VNRCSATIAGHTEAV----LSVAFSPD 119
++V S+ + P VF + P V+ AG+++A +S+A+S D
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 120 GRQLASGSGDTTVRLWDLNT 139
G+ L +G D +R+W + T
Sbjct: 298 GQTLFAGYTDNVIRVWQVMT 317
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 135/366 (36%), Gaps = 78/366 (21%)
Query: 103 TIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCI 156
T+ GH V S+A S L S S D T+ W L P+ GH + V
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
+ADG + +S S L+ WD TG+ + GHK + V ++ +S
Sbjct: 66 TLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVM-----SVDIDKKASMIISG 119
Query: 217 SKDGDARIWDVSLRKCVICLSGHTLAVTCV------KWGGDGV-IYTGSQDCTIKVWETT 269
S+D ++W + +C+ L GH V+ V K D V I + D +K W
Sbjct: 120 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 178
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
Q ++ + GH +N+L S + L
Sbjct: 179 QFQIEADFIGHNSNINTLTASPDGTL---------------------------------- 204
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
+ S D + LW A K T Q V + FSP+ W+A+A
Sbjct: 205 --IASAGKDGEIMLWNLAAKKAMYT--LSAQDEVFSLAFSPNRYWLAAA----------- 249
Query: 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449
T + VF + P Y L+ R Y +SL +WSAD + L +G
Sbjct: 250 -TATGIKVFS--LDPQY-----LVDDLRPEFAGYSKAAEPHAVSL-AWSADGQTLFAGYT 300
Query: 450 DSTLKV 455
D+ ++V
Sbjct: 301 DNVIRV 306
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 27/186 (14%)
Query: 99 RCSATIAGHTEAVLSVAFSP------DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW 152
+C AT+ GH + V V P D + S D V+ W+LN GH +
Sbjct: 133 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN 192
Query: 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNA--PC 210
+ + S DG + S K GE+ W+ L+ K T + + V A P
Sbjct: 193 INTLTASPDGTLIASAGKDGEIMLWN----------LAAKKAMYTLSAQDEVFSLAFSPN 242
Query: 211 RRFVSASKDGDARIWDVSLRKCVICL----SGHTLA----VTCVKWGGDG-VIYTGSQDC 261
R +++A+ +++ + + V L +G++ A + W DG ++ G D
Sbjct: 243 RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 302
Query: 262 TIKVWE 267
I+VW+
Sbjct: 303 VIRVWQ 308
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ------TPMFK--CTGHKNWVLCIAWSA 160
+ V S+AFSP+ LA+ + T ++++ L+ Q P F + + +AWSA
Sbjct: 232 DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA 290
Query: 161 DGKHLVSGSKAGELQCWDPQTG 182
DG+ L +G ++ W T
Sbjct: 291 DGQTLFAGYTDNVIRVWQVMTA 312
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 19/80 (23%)
Query: 79 EKVLSIVYQPQ------------AVFRIRP---VNRCSATIAGHTEAV----LSVAFSPD 119
++V S+ + P VF + P V+ AG+++A +S+A+S D
Sbjct: 232 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 291
Query: 120 GRQLASGSGDTTVRLWDLNT 139
G+ L +G D +R+W + T
Sbjct: 292 GQTLFAGYTDNVIRVWQVMT 311
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 135/366 (36%), Gaps = 78/366 (21%)
Query: 103 TIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCI 156
T+ GH V S+A S L S S D T+ W L P+ GH + V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
+ADG + +S S L+ WD TG+ + GHK + V ++ +S
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVM-----SVDIDKKASMIISG 125
Query: 217 SKDGDARIWDVSLRKCVICLSGHTLAVTCV------KWGGDGV-IYTGSQDCTIKVWETT 269
S+D ++W + +C+ L GH V+ V K D V I + D +K W
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
Q ++ + GH +N+L S + L
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTL---------------------------------- 210
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
+ S D + LW A K T Q V + FSP+ W+A+A
Sbjct: 211 --IASAGKDGEIMLWNLAAKKAMYT--LSAQDEVFSLAFSPNRYWLAAA----------- 255
Query: 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449
T + VF + P Y L+ R Y +SL +WSAD + L +G
Sbjct: 256 -TATGIKVFS--LDPQY-----LVDDLRPEFAGYSKAAEPHAVSL-AWSADGQTLFAGYT 306
Query: 450 DSTLKV 455
D+ ++V
Sbjct: 307 DNVIRV 312
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 27/186 (14%)
Query: 99 RCSATIAGHTEAVLSVAFSP------DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW 152
+C AT+ GH + V V P D + S D V+ W+LN GH +
Sbjct: 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN 198
Query: 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNA--PC 210
+ + S DG + S K GE+ W+ L+ K T + + V A P
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLWN----------LAAKKAMYTLSAQDEVFSLAFSPN 248
Query: 211 RRFVSASKDGDARIWDVSLRKCVICL----SGHTLA----VTCVKWGGDG-VIYTGSQDC 261
R +++A+ +++ + + V L +G++ A + W DG ++ G D
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308
Query: 262 TIKVWE 267
I+VW+
Sbjct: 309 VIRVWQ 314
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ------TPMFK--CTGHKNWVLCIAWSA 160
+ V S+AFSP+ LA+ + T ++++ L+ Q P F + + +AWSA
Sbjct: 238 DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA 296
Query: 161 DGKHLVSGSKAGELQCWDPQTG 182
DG+ L +G ++ W T
Sbjct: 297 DGQTLFAGYTDNVIRVWQVMTA 318
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 19/80 (23%)
Query: 79 EKVLSIVYQPQ------------AVFRIRP---VNRCSATIAGHTEAV----LSVAFSPD 119
++V S+ + P VF + P V+ AG+++A +S+A+S D
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 120 GRQLASGSGDTTVRLWDLNT 139
G+ L +G D +R+W + T
Sbjct: 298 GQTLFAGYTDNVIRVWQVMT 317
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 11/212 (5%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL- 165
H + V +V+ G Q SGS D +++WDL Q + H V C+A S +
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWI-TGISWEPVHLNAPCRRFVSASKDGDARI 224
+S S+ + WD + KP+ ++ T ++W P FV ++G +
Sbjct: 186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEV----FVFGDENGTVSL 241
Query: 225 WDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTG--SQDCTIKVWETTQGKLIRELKGHGH 282
D CV+ + H+ VT + + V + S+DC++ V +++ +L R + H
Sbjct: 242 VDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS-QAHRD 300
Query: 283 WVNSLALS--TEYALRTGAFDHTGKQYSSPEE 312
+V S L T +DH + P E
Sbjct: 301 FVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 135/366 (36%), Gaps = 78/366 (21%)
Query: 103 TIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCI 156
T+ GH V S+A S L S S D T+ W L P+ GH + V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
+ADG + +S S L+ WD TG+ + GHK + V ++ +S
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVX-----SVDIDKKASXIISG 125
Query: 217 SKDGDARIWDVSLRKCVICLSGHTLAVTCV------KWGGDGV-IYTGSQDCTIKVWETT 269
S+D ++W + +C+ L GH V+ V K D V I + D +K W
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLN 184
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
Q ++ + GH +N+L S + L
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTL---------------------------------- 210
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
+ S D + LW A K T Q V + FSP+ W+A+A
Sbjct: 211 --IASAGKDGEIXLWNLAAKKAXYT--LSAQDEVFSLAFSPNRYWLAAA----------- 255
Query: 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449
T + VF + P Y L+ R Y +SL +WSAD + L +G
Sbjct: 256 -TATGIKVFS--LDPQY-----LVDDLRPEFAGYSKAAEPHAVSL-AWSADGQTLFAGYT 306
Query: 450 DSTLKV 455
D+ ++V
Sbjct: 307 DNVIRV 312
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 23/184 (12%)
Query: 99 RCSATIAGHTEAVLSVAFSP------DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW 152
+C AT+ GH + V V P D + S D V+ W+LN GH +
Sbjct: 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSN 198
Query: 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRR 212
+ + S DG + S K GE+ W+ K + LS + + +++ +P R
Sbjct: 199 INTLTASPDGTLIASAGKDGEIXLWN-LAAKKAXYTLSAQDE-VFSLAF------SPNRY 250
Query: 213 FVSASKDGDARIWDVSLRKCVICL----SGHTLA----VTCVKWGGDG-VIYTGSQDCTI 263
+++A+ +++ + + V L +G++ A + W DG ++ G D I
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 264 KVWE 267
+VW+
Sbjct: 311 RVWQ 314
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ------TPMFK--CTGHKNWVLCIAWSA 160
+ V S+AFSP+ LA+ + T ++++ L+ Q P F + + +AWSA
Sbjct: 238 DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA 296
Query: 161 DGKHLVSGSKAGELQCWDPQTG 182
DG+ L +G ++ W T
Sbjct: 297 DGQTLFAGYTDNVIRVWQVXTA 318
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 19/80 (23%)
Query: 79 EKVLSIVYQPQ------------AVFRIRP---VNRCSATIAGHTEAV----LSVAFSPD 119
++V S+ + P VF + P V+ AG+++A +S+A+S D
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 120 GRQLASGSGDTTVRLWDLNT 139
G+ L +G D +R+W + T
Sbjct: 298 GQTLFAGYTDNVIRVWQVXT 317
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 102/235 (43%), Gaps = 29/235 (12%)
Query: 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT---GHKNWVLCIAWSADGKHLVSGSK 170
+A++P G LAS GD +R+W + + K GH+ V +AWS G +L S S
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 171 AGELQCWDP-QTGKPSGNPLSGHKKWITGISWEPV-HLNAPCRRFVSASKDGDARIWDVS 228
W Q L GH+ + ++W P +L A C S+D +W+V
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATC------SRDKSVWVWEVD 135
Query: 229 LR---KCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVWETTQGKLI--RELKGHGH 282
+CV L+ HT V V W ++ + S D T+K++ + + L+GH
Sbjct: 136 EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHES 195
Query: 283 WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337
V SL AFD +G++ +S + + + R + GN SGSD
Sbjct: 196 TVWSL-----------AFDPSGQRLASCSDDRTVRIWR-QYLPGNEQGVACSGSD 238
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 16/170 (9%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT----GHKNWVLCIAWSAD 161
GH V VA+SP G LAS S D T +W N F+C GH+N V +AW+
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD--FECVTTLEGHENEVKSVAWAPS 116
Query: 162 GKHLVSGSKAGELQCW--DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD 219
G L + S+ + W D + + L+ H + + + W P SAS D
Sbjct: 117 GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ-----ELLASASYD 171
Query: 220 GDARIWDVSLRKCVIC--LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVW 266
+++ V C L GH V + + G + + S D T+++W
Sbjct: 172 DTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 92/224 (41%), Gaps = 36/224 (16%)
Query: 66 PLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLAS 125
P G+YL S + I + Q F C T+ GH V SVA++P G LA+
Sbjct: 71 PCGNYLAS--ASFDATTCIWKKNQDDFE------CVTTLEGHENEVKSVAWAPSGNLLAT 122
Query: 126 GSGDTTVRLWDLNTQTPMFKC----TGHKNWVLCIAWSADGKHLVSGSKAGELQCW-DPQ 180
S D +V +W+++ + ++C H V + W + L S S ++ + + +
Sbjct: 123 CSRDKSVWVWEVDEEDE-YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE 181
Query: 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR---------- 230
L GH+ + ++++P +R S S D RIW L
Sbjct: 182 DDWVCCATLEGHESTVWSLAFDPSG-----QRLASCSDDRTVRIWRQYLPGNEQGVACSG 236
Query: 231 -----KCVICLSG-HTLAVTCVKWGG-DGVIYTGSQDCTIKVWE 267
KC+ LSG H+ + + W G + T D I+V++
Sbjct: 237 SDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQ 280
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 48/118 (40%), Gaps = 20/118 (16%)
Query: 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF--VAVFRGHVGPVYQIRFE---- 411
GHQ+ V V +SP G ++ASASFD + +W F V GH V + +
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 412 -LIYCFRYPSNFYCVVD----MSCCMSLYS---------WSADSRLLLSGSKDSTLKV 455
L C R S + VD C L S W LL S S D T+K+
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKL 176
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 28/181 (15%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLW------DLNTQTPMFKCT-GHKNWVLCIAW 158
H +A+ SVA+ P LA+GS D+TV +W D + + GH+N V +AW
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 159 SADGKHLVSGSKAGELQCWD-PQTGKPSG--NPLSGHKKWITGISWEPVHLNAPCRRFVS 215
S DG +L + S+ + W+ ++G+ + L H + + + W P S
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE-----ALLAS 170
Query: 216 ASKDGDARIWD--VSLRKCVICLSGHTLAVTCVKWGGD-----GV--IYTGSQDCTIKVW 266
+S D RIW +CV L+GH V W D GV + +GS D T++VW
Sbjct: 171 SSYDDTVRIWKDYDDDWECVAVLNGHEGTV----WSSDFDKTEGVFRLCSGSDDSTVRVW 226
Query: 267 E 267
+
Sbjct: 227 K 227
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 84/211 (39%), Gaps = 20/211 (9%)
Query: 77 SVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136
S + +SI + ++ R ++ A I GH V VA+S DG LA+ S D +V +W+
Sbjct: 77 SFDSTVSIWAKEESADRTFEMDLL-AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135
Query: 137 LNTQTPMFKCTG----HKNWVLCIAWSADGKHLVSGSKAGELQCW-DPQTGKPSGNPLSG 191
+ ++C H V + W L S S ++ W D L+G
Sbjct: 136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG 195
Query: 192 HKKWITGISW-EPVHLNAPCRRFVSASKDGDARIW-----DVSLRKCVICLS----GHTL 241
H+ G W R S S D R+W D ++ +C + H
Sbjct: 196 HE----GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR 251
Query: 242 AVTCVKWGGDGVIYTGSQDCTIKVWETTQGK 272
V V WG +G+I + D + V+E G+
Sbjct: 252 QVYNVAWGFNGLIASVGADGVLAVYEEVDGE 282
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 94/256 (36%), Gaps = 58/256 (22%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRL----WDLNTQTPMFKCTGHKNWVLCIAWSADG 162
+ E + S FS LA+GS D ++L +D T + T HK + +AW
Sbjct: 13 YKEKIWSFDFSQ--GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT 70
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLS------GHKKWITGISWEPVHLNAPCRRFVSA 216
L +GS + W + + GH+ + G++W + +
Sbjct: 71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW-----SNDGYYLATC 125
Query: 217 SKDGDARIWDVSLR----KCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVWETTQG 271
S+D IW+ +C+ L H+ V V W + ++ + S D T+++W+
Sbjct: 126 SRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD 185
Query: 272 --KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
+ + L GH S+++ G F
Sbjct: 186 DWECVAVLNGH----EGTVWSSDFDKTEGVF----------------------------- 212
Query: 330 ERLVSGSDDFTMFLWE 345
RL SGSDD T+ +W+
Sbjct: 213 -RLCSGSDDSTVRVWK 227
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 29/153 (18%)
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRMT------GHQQLVNHVYFSPDGQWVASASFDKSIK 385
L +GS D T+ +W S M GH+ V V +S DG ++A+ S DKS+
Sbjct: 73 LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVW 132
Query: 386 LW----NGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV--------DMSCCMS 433
+W +G + ++V + H V + + S++ V D C
Sbjct: 133 IWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAV 192
Query: 434 LYS-----WSADSR------LLLSGSKDSTLKV 455
L WS+D L SGS DST++V
Sbjct: 193 LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRV 225
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 52/145 (35%), Gaps = 35/145 (24%)
Query: 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG---- 392
DDFT+ T H++ + V + P +A+ SFD ++ +W
Sbjct: 44 DDFTLI---------DVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRT 94
Query: 393 ---KFVAVFRGHVGPVYQIR-----FELIYCFRYPSNFYCVVDMSC----CMSLYS---- 436
+A+ GH V + + L C R S + D S C+S+
Sbjct: 95 FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ 154
Query: 437 ------WSADSRLLLSGSKDSTLKV 455
W LL S S D T+++
Sbjct: 155 DVKHVIWHPSEALLASSSYDDTVRI 179
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 93/222 (41%), Gaps = 19/222 (8%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN---TQTPM--FKCTGHKNWVLCIAWSAD 161
H E V +V S R + +G G V++WD++ ++P+ C N++ D
Sbjct: 50 HGEVVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108
Query: 162 GKHLVSGSKAGELQCWDPQTGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG 220
G L+ G +A L WD P L+ ++ P + S DG
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-----DSKVCFSCCSDG 163
Query: 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKG 279
+ +WD+ + V GHT +C+ DG ++TG D T++ W+ +G+ +++
Sbjct: 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ--- 220
Query: 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321
H S S Y TG + G + S+ E + ++Y
Sbjct: 221 --HDFTSQIFSLGYC-PTGEWLAVGMESSNVEVLHVNKPDKY 259
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%)
Query: 96 PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC 155
P R A + A ++A SPD + S D + +WDL+ QT + + GH + C
Sbjct: 129 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 188
Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGK 183
I S DG L +G ++ WD + G+
Sbjct: 189 IDISNDGTKLWTGGLDNTVRSWDLREGR 216
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 332 LVSGSDDFTMFLWEPAV-SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390
L+ G + T+ +W+ A + + K +T + SPD + S D +I +W+
Sbjct: 112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH 171
Query: 391 TGKFVAVFRGH 401
V F+GH
Sbjct: 172 NQTLVRQFQGH 182
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 86/215 (40%), Gaps = 36/215 (16%)
Query: 83 SIVYQPQAVFRI-------------RPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGD 129
S+ ++P FRI P + +T HT+ V SV ++PDG AS GD
Sbjct: 152 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 211
Query: 130 TTVRLWD--LNTQTPMF-----KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182
T+ L++ T+T +F K H V + WS DG + S S ++ W+ T
Sbjct: 212 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL 271
Query: 183 K-----PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS 237
K P G + + GI W + VS S +G + L
Sbjct: 272 KVEKTIPVGTRIEDQQ---LGIIWTK-------QALVSISANGFINFVNPELGSIDQVRY 321
Query: 238 GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG 271
GH A+T + DG +++ + I W+ + G
Sbjct: 322 GHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 12/163 (7%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT---QTPMFKCTGHKNWVLCIAWSADGK 163
H+ +V + +SPDG ++AS S D T+++W++ T + + T ++ L I W+ +
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK--Q 295
Query: 164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223
LVS S G + +P+ G GH K IT +S +A + SA +G
Sbjct: 296 ALVSISANGFINFVNPELGSID-QVRYGHNKAITALS-----SSADGKTLFSADAEGHIN 349
Query: 224 IWDVSLR-KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKV 265
WD+S + H +T +K G ++T S D +KV
Sbjct: 350 SWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKV 392
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 58/139 (41%), Gaps = 35/139 (25%)
Query: 324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKS 383
K + P R++SGSDD T+ ++E K K+ H + V+ V ++PDG AS D +
Sbjct: 155 FKPSRPFRIISGSDDNTVAIFEGPPFKF-KSTFGEHTKFVHSVRYNPDGSLFASTGGDGT 213
Query: 384 IKLWNGTTGKFVAVFR-------GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS 436
I L+NG G VF H G V+ + +
Sbjct: 214 IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL---------------------------T 246
Query: 437 WSADSRLLLSGSKDSTLKV 455
WS D + S S D T+K+
Sbjct: 247 WSPDGTKIASASADKTIKI 265
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 123/313 (39%), Gaps = 29/313 (9%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSADGKH 164
H+ SP G ASG VR+WD T + K T V I+W ++ K
Sbjct: 58 HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 117
Query: 165 LVSGSKA----GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG 220
+ + + G + +D TG +GN L+G + + + ++P + R +S S D
Sbjct: 118 IAAVGEGRERFGHVFLFD--TGTSNGN-LTGQARAMNSVDFKP----SRPFRIISGSDDN 170
Query: 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ-DCTIKVWETTQGKLI----- 274
I++ K HT V V++ DG ++ + D TI ++ G
Sbjct: 171 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED 230
Query: 275 RELKGHGHWVNSLALS---TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN---- 327
LK H + L+ + + + D T K ++ + + +I+
Sbjct: 231 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI 290
Query: 328 --APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385
+ LVS S + + P + + R GH + + + S DG+ + SA + I
Sbjct: 291 IWTKQALVSISANGFINFVNPELGSIDQVRY-GHNKAITALSSSADGKTLFSADAEGHIN 349
Query: 386 LWNGTTGKFVAVF 398
W+ +TG VF
Sbjct: 350 SWDISTGISNRVF 362
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 67/160 (41%), Gaps = 11/160 (6%)
Query: 114 VAFSPDGRQLASGSGDTTVRLWDLN-TQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG 172
VA S D + +A G D+ V ++ L+ K H + +A+S +G LV+ ++
Sbjct: 454 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR 513
Query: 173 ELQCWDPQTG--KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL- 229
++ + N + H + +SW P ++ R + S D +W+++
Sbjct: 514 KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV-----RLATGSLDNSVIVWNMNKP 568
Query: 230 -RKCVICLSGHTLA-VTCVKWGGDGVIYTGSQDCTIKVWE 267
+I H ++ V V W + I + QD IK W
Sbjct: 569 SDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 608
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 15/128 (11%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC---TGHKNWVLCIAWSADGK 163
H + SVAFS +G L + V + + + T H V C++WS D
Sbjct: 490 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 549
Query: 164 HLVSGSKAGELQCWDPQTGKPSGNPL---SGHK-KWITGISWEPVHLNAPCRRFVSASKD 219
L +GS + W+ KPS +P+ H + + W LN VSA +D
Sbjct: 550 RLATGSLDNSVIVWN--MNKPSDHPIIIKGAHAMSSVNSVIW----LNETT--IVSAGQD 601
Query: 220 GDARIWDV 227
+ + W+V
Sbjct: 602 SNIKFWNV 609
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 99/247 (40%), Gaps = 35/247 (14%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM--FKC-------------TGHKN 151
H ++SV ++ DG + S + LW++ + T M F+ +G +
Sbjct: 148 HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGS 207
Query: 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR 211
+ + W D K ++ G K G + + P+G L GH I+ + N +
Sbjct: 208 LGVDVEWVDDDKFVIPGPK-GAIFVYQITEKTPTG-KLIGHHGPIS-----VLEFNDTNK 260
Query: 212 RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQG 271
+SAS DG RIW C GH+ ++ W GD + + S D ++++W Q
Sbjct: 261 LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQN 320
Query: 272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331
L+ +L++ + G G++Y+ + Y+ K N+ R
Sbjct: 321 TLL-----------ALSIVDGVPIFAGRISQDGQKYAVA--FMDGQVNVYDLKKLNSKSR 367
Query: 332 LVSGSDD 338
+ G+ D
Sbjct: 368 SLYGNRD 374
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 105/276 (38%), Gaps = 51/276 (18%)
Query: 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPC 210
N V C+AWS DG +V+G + GEL+ W+ +TG N L+ H+ I + W N
Sbjct: 109 NQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALL-NVLNFHRAPIVSVKW-----NKDG 161
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVI----YTGSQDCTIKV- 265
+S + +W+V +SG + +K G I ++G + V
Sbjct: 162 THIISMDVENVTILWNV--------ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVE 213
Query: 266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325
W +I KG + + TGK + NK+
Sbjct: 214 WVDDDKFVIPGPKG-----------AIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKL- 261
Query: 326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385
L+S SDD T+ +W + + GH Q + + D + V S S D S++
Sbjct: 262 ------LLSASDDGTLRIWHGG-NGNSQNCFYGHSQSIVSASWVGDDK-VISCSMDGSVR 313
Query: 386 LWNGTTGKFVA--------VFRGHV---GPVYQIRF 410
LW+ +A +F G + G Y + F
Sbjct: 314 LWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAF 349
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 25/188 (13%)
Query: 100 CSATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDL----------------NTQTP 142
CS + GH + +L+V++SP LA+ S D+ V+LWD+ +Q
Sbjct: 178 CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAV 237
Query: 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWE 202
T H V + +++DG HL++ ++ W+ G+ N L + K + S +
Sbjct: 238 ESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE---NTLVNYGK-VCNNSKK 293
Query: 203 PVHLNAPC---RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGS 258
+ C FV ++ V + + L GH V C + + +Y+GS
Sbjct: 294 GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGS 353
Query: 259 QDCTIKVW 266
+DC I W
Sbjct: 354 RDCNILAW 361
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 17/141 (12%)
Query: 107 HTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNT-QTP---MFKCTGHKNWVLCIAWSAD 161
H +V +V + P D S S D T+++WD NT QT F+ T + + + ++
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVS---- 153
Query: 162 GKH--LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD 219
KH + G++ ++Q D ++G S + L GH++ I +SW P + +AS D
Sbjct: 154 TKHCLVAVGTRGPKVQLCDLKSGSCS-HILQGHRQEILAVSWSPRYDYI----LATASAD 208
Query: 220 GDARIWDVSLRK-CVICLSGH 239
++WDV C+I L H
Sbjct: 209 SRVKLWDVRRASGCLITLDQH 229
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 67/326 (20%), Positives = 123/326 (37%), Gaps = 51/326 (15%)
Query: 107 HTEAVLSVAFSP-DGRQLASGSGDTTVRLWDL--NTQTPMFKCTG-----------HKNW 152
H + ++ P +GR + SG D + L+DL +++ + C H+
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 153 VLCIAW-SADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR 211
V + W D S S L+ WD T + + + ++ + PV C
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA--DVFNFEETVYSHHMSPVS-TKHCL 158
Query: 212 RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG--DGVIYTGSQDCTIKVWETT 269
V ++ ++ D+ C L GH + V W D ++ T S D +K+W+
Sbjct: 159 VAV-GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 270 Q------------GKLIRELK----GHGHWVNSLALSTE-YALRTGAFDHTGKQYSSPEE 312
+ GK + ++ H VN L +++ L T D+ + ++S
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN- 276
Query: 313 MKKAALERYNKIKGNAPERL-----VSGSDDFTMFLWEPAV------SKQPKTRMTGHQQ 361
+ L Y K+ N+ + L S +F + + S + T + GH +
Sbjct: 277 -GENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK 335
Query: 362 LVNHVYFSPDGQWVASASFDKSIKLW 387
V+ F + Q + S S D +I W
Sbjct: 336 TVDCCVFQSNFQELYSGSRDCNILAW 361
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 43/224 (19%), Positives = 87/224 (38%), Gaps = 47/224 (20%)
Query: 192 HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS------GHTLAVTC 245
H+ + + W P F S+S D ++WD + + + H ++
Sbjct: 98 HRYSVETVQWYPHDTGM----FTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVS 153
Query: 246 VKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALST--EYALRTGAFDHT 303
K ++ G++ +++ + G L+GH + +++ S +Y L T + D
Sbjct: 154 TK---HCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSR 210
Query: 304 GKQYSSPEEMKKAA-----LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG 358
K + ++++A+ L+++N K A E + T
Sbjct: 211 VKLW----DVRRASGCLITLDQHNGKKSQAVE-----------------------SANTA 243
Query: 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV 402
H VN + F+ DG + + D ++LWN + G+ V G V
Sbjct: 244 HNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKV 287
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 84/225 (37%), Gaps = 27/225 (12%)
Query: 101 SATIAGHTEAVLSVAFSPDGRQ---LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
+A + E V S SP + +A G+ V+L DL + + GH+ +L ++
Sbjct: 134 TADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVS 193
Query: 158 WSADGKH-LVSGSKAGELQCWDPQTGKPSGNPLSGH--KKWITGISWEPVH---LNAPC- 210
WS + L + S ++ WD + L H KK S H +N C
Sbjct: 194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253
Query: 211 ----RRFVSASKDGDARIWDVSL---------RKCVICLSGHTLAVTCVKWGGDGVIYTG 257
++ D R+W+ S + C G V+C + G
Sbjct: 254 TSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG 313
Query: 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY-ALRTGAFD 301
S TI V+ G+ I LKGH V+ + + L +G+ D
Sbjct: 314 S---TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRD 355
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 84/217 (38%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-- 161
H E + G++LA+ S D T++++++ +T TGH+ V + W+
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
G L S S G++ W + G+ S + H + + W P H P + AS DG
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPL--LLVASSDG 123
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWG-----GDGV---------IYTGSQDCTIK 264
+ + I + H + V W DG TG D +K
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
+W+ L L+GH WV +A S LR+
Sbjct: 184 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWN--GTTGKFVAVFRGHVGPVYQI 408
H +L++ G+ +A+ S DK+IK++ G T K + GH GPV+++
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV 59
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 57/146 (39%), Gaps = 26/146 (17%)
Query: 102 ATIAGHTEAVLSVAFSPDGR----QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
A A H+ +V SV ++P +AS G +V + N T H V +
Sbjct: 93 AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 152
Query: 158 WS-----ADGKH--------LVSGSKAGELQCW----DPQTGKPSGNPLSGHKKWITGIS 200
W+ DG+H V+G ++ W D QT L GH W+ ++
Sbjct: 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST-LEGHSDWVRDVA 211
Query: 201 WEPVHLNAPCRRFV-SASKDGDARIW 225
W P L R ++ S S+D IW
Sbjct: 212 WSPTVL---LRSYLASVSQDRTCIIW 234
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 84/217 (38%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-- 161
H E + G++LA+ S D T++++++ +T TGH+ V + W+
Sbjct: 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 68
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
G L S S G++ W + G+ S + H + + W P H P + AS DG
Sbjct: 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPL--LLVASSDG 125
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWG-----GDGV---------IYTGSQDCTIK 264
+ + I + H + V W DG TG D +K
Sbjct: 126 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 185
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
+W+ L L+GH WV +A S LR+
Sbjct: 186 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 222
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWN--GTTGKFVAVFRGHVGPVYQIRF 410
H +L++ G+ +A+ S DK+IK++ G T K + GH GPV+++ +
Sbjct: 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 63
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 67/152 (44%), Gaps = 20/152 (13%)
Query: 93 RIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL-NTQTPMFKCTGHK 150
R ++ S T+ HT V ++F+P LA+GS D TV LWDL N + + HK
Sbjct: 262 RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 321
Query: 151 NWVLCIAWSADGK------------HLVSGSKAGELQ-CWDPQTGKPSGNPL-SGHKKWI 196
+ + + WS + H+ SK GE Q D + G P + GH I
Sbjct: 322 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 381
Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
+ SW P N P S S+D ++W ++
Sbjct: 382 SDFSWNP---NEPW-IICSVSEDNIMQVWQMA 409
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 34/189 (17%)
Query: 104 IAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQTPMFKC-------TGHKNWVLC 155
+ GH + ++++P+ L S S D T+ LWD+N + TGH V
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 156 IAWSADGKHLVSGSKAG------ELQCWDPQ---TGKPSGNPLSGHKKWITGISWEPVHL 206
+AW HL+ S G +L WD + T KPS + + H + +S+ P
Sbjct: 237 VAW-----HLLHESLFGSVADDQKLMIWDTRNNNTSKPS-HTVDAHTAEVNCLSFNPY-- 288
Query: 207 NAPCRRFVSA--SKDGDARIWDV-SLRKCVICLSGHTLAVTCVKWG--GDGVIYTGSQDC 261
F+ A S D +WD+ +L+ + H + V+W + ++ + D
Sbjct: 289 ----SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 344
Query: 262 TIKVWETTQ 270
+ VW+ ++
Sbjct: 345 RLHVWDLSK 353
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 88/225 (39%), Gaps = 51/225 (22%)
Query: 179 PQTGKPSGN-----PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL---R 230
P +PSG L GH+K G+SW P +LN +SAS D +WD++
Sbjct: 162 PSKPEPSGECQPDLRLRGHQKEGYGLSWNP-NLNG---YLLSASDDHTICLWDINATPKE 217
Query: 231 KCVI----CLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWV 284
VI +GHT V V W + + + + D + +W+T
Sbjct: 218 HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN------------- 264
Query: 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW 344
T HT +++ E+ + Y++ L +GS D T+ LW
Sbjct: 265 -----------NTSKPSHTVDAHTA--EVNCLSFNPYSEFI------LATGSADKTVALW 305
Query: 345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSIKLWN 388
+ K H+ + V +SP + + AS+ D+ + +W+
Sbjct: 306 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 345 EPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLW--NGTTGKFVA----- 396
EP+ QP R+ GHQ+ + ++P+ ++ SAS D +I LW N T +
Sbjct: 166 EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 225
Query: 397 VFRGHVGPVYQIRFELIY 414
+F GH V + + L++
Sbjct: 226 IFTGHTAVVEDVAWHLLH 243
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 67/152 (44%), Gaps = 20/152 (13%)
Query: 93 RIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL-NTQTPMFKCTGHK 150
R ++ S T+ HT V ++F+P LA+GS D TV LWDL N + + HK
Sbjct: 264 RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 323
Query: 151 NWVLCIAWSADGK------------HLVSGSKAGELQ-CWDPQTGKPSGNPL-SGHKKWI 196
+ + + WS + H+ SK GE Q D + G P + GH I
Sbjct: 324 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 383
Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
+ SW P N P S S+D ++W ++
Sbjct: 384 SDFSWNP---NEPW-IICSVSEDNIMQVWQMA 411
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 34/189 (17%)
Query: 104 IAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQTPMFKC-------TGHKNWVLC 155
+ GH + ++++P+ L S S D T+ LWD+N + TGH V
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 156 IAWSADGKHLVSGSKAG------ELQCWDPQ---TGKPSGNPLSGHKKWITGISWEPVHL 206
+AW HL+ S G +L WD + T KPS + + H + +S+ P
Sbjct: 239 VAW-----HLLHESLFGSVADDQKLMIWDTRNNNTSKPS-HTVDAHTAEVNCLSFNPY-- 290
Query: 207 NAPCRRFVSA--SKDGDARIWDV-SLRKCVICLSGHTLAVTCVKWG--GDGVIYTGSQDC 261
F+ A S D +WD+ +L+ + H + V+W + ++ + D
Sbjct: 291 ----SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 346
Query: 262 TIKVWETTQ 270
+ VW+ ++
Sbjct: 347 RLHVWDLSK 355
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 88/225 (39%), Gaps = 51/225 (22%)
Query: 179 PQTGKPSGN-----PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL---R 230
P +PSG L GH+K G+SW P +LN +SAS D +WD++
Sbjct: 164 PSKPEPSGECQPDLRLRGHQKEGYGLSWNP-NLNG---YLLSASDDHTICLWDINATPKE 219
Query: 231 KCVI----CLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWV 284
VI +GHT V V W + + + + D + +W+T
Sbjct: 220 HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN------------- 266
Query: 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW 344
T HT +++ E+ + Y++ L +GS D T+ LW
Sbjct: 267 -----------NTSKPSHTVDAHTA--EVNCLSFNPYSEFI------LATGSADKTVALW 307
Query: 345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSIKLWN 388
+ K H+ + V +SP + + AS+ D+ + +W+
Sbjct: 308 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 352
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 345 EPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLW--NGTTGKFVA----- 396
EP+ QP R+ GHQ+ + ++P+ ++ SAS D +I LW N T +
Sbjct: 168 EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 227
Query: 397 VFRGHVGPVYQIRFELIY 414
+F GH V + + L++
Sbjct: 228 IFTGHTAVVEDVAWHLLH 245
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 13/219 (5%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV 166
H + V +++ DG Q SG D +V++WDL+ + + H + V C+A + GK +
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVA-ACPGKDTI 196
Query: 167 --SGSKAGELQCWDPQTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223
S + G + WD + KP+ T ++W P + F + G+
Sbjct: 197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDT----FACGDETGNVS 252
Query: 224 IWDVSLRKCVICLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWETTQGKLIRELKGHG 281
+ ++ + H+ +T + + + + S+DCT+ V + ++ R+L H
Sbjct: 253 LVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS-HR 311
Query: 282 HWVNSLALS--TEYALRTGAFDHTGKQYSSPEEMKKAAL 318
+V +A S T +DH + P E + L
Sbjct: 312 DFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTENL 350
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 67/152 (44%), Gaps = 20/152 (13%)
Query: 93 RIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL-NTQTPMFKCTGHK 150
R ++ S T+ HT V ++F+P LA+GS D TV LWDL N + + HK
Sbjct: 266 RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 325
Query: 151 NWVLCIAWSADGK------------HLVSGSKAGELQ-CWDPQTGKPSGNPL-SGHKKWI 196
+ + + WS + H+ SK GE Q D + G P + GH I
Sbjct: 326 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 385
Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
+ SW P N P S S+D ++W ++
Sbjct: 386 SDFSWNP---NEPW-IICSVSEDNIMQVWQMA 413
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 82/200 (41%), Gaps = 36/200 (18%)
Query: 95 RPVNRCSATIA--GHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQTPMFKC----- 146
P C + GH + ++++P+ L S S D T+ LWD+N +
Sbjct: 170 EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 229
Query: 147 --TGHKNWVLCIAWSADGKHLVSGSKAG------ELQCWDPQ---TGKPSGNPLSGHKKW 195
TGH V +AW HL+ S G +L WD + T KPS + + H
Sbjct: 230 IFTGHTAVVEDVAW-----HLLHESLFGSVADDQKLMIWDTRNNNTSKPS-HTVDAHTAE 283
Query: 196 ITGISWEPVHLNAPCRRFVSA--SKDGDARIWDV-SLRKCVICLSGHTLAVTCVKWG--G 250
+ +S+ P F+ A S D +WD+ +L+ + H + V+W
Sbjct: 284 VNCLSFNPY------SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN 337
Query: 251 DGVIYTGSQDCTIKVWETTQ 270
+ ++ + D + VW+ ++
Sbjct: 338 ETILASSGTDRRLHVWDLSK 357
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 88/225 (39%), Gaps = 51/225 (22%)
Query: 179 PQTGKPSGN-----PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL---R 230
P +PSG L GH+K G+SW P +LN +SAS D +WD++
Sbjct: 166 PSKPEPSGECQPDLRLRGHQKEGYGLSWNP-NLNG---YLLSASDDHTICLWDINATPKE 221
Query: 231 KCVI----CLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWV 284
VI +GHT V V W + + + + D + +W+T
Sbjct: 222 HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN------------ 269
Query: 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW 344
T HT +++ E+ + Y++ L +GS D T+ LW
Sbjct: 270 ------------TSKPSHTVDAHTA--EVNCLSFNPYSEFI------LATGSADKTVALW 309
Query: 345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSIKLWN 388
+ K H+ + V +SP + + AS+ D+ + +W+
Sbjct: 310 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 354
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 345 EPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLW--NGTTGKFVA----- 396
EP+ QP R+ GHQ+ + ++P+ ++ SAS D +I LW N T +
Sbjct: 170 EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 229
Query: 397 VFRGHVGPVYQIRFELIY 414
+F GH V + + L++
Sbjct: 230 IFTGHTAVVEDVAWHLLH 247
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 84/217 (38%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-- 161
H E + G+++A+ S D T++++++ +T TGH+ V + W+
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
G L S S G++ W + G+ S + H + + W P H P + AS DG
Sbjct: 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPM--LLVASSDG 123
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWG-----GDGV---------IYTGSQDCTIK 264
+ + I + H + V W DG TG D +K
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
+W+ L L+GH WV +A S LR+
Sbjct: 184 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWN--GTTGKFVAVFRGHVGPVYQIRF 410
H ++++ G+ +A+ S DK+IK++ G T K + GH GPV+++ +
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 84/217 (38%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-- 161
H E + G++LA+ S D T++++++ +T TGH+ V + W+
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
G L S S G++ W + G+ S + H + + W P H P + AS DG
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPL--LLVASSDG 123
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWG-----GDGV---------IYTGSQDCTIK 264
+ + I + H + V W DG TG D +K
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
+W+ L L+GH WV +A S LR+
Sbjct: 184 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWN--GTTGKFVAVFRGHVGPVYQIRF 410
H +L++ G+ +A+ S DK+IK++ G T K + GH GPV+++ +
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 20/152 (13%)
Query: 93 RIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL-NTQTPMFKCTGHK 150
R ++ S ++ HT V ++F+P LA+GS D TV LWDL N + + HK
Sbjct: 258 RSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 317
Query: 151 NWVLCIAWSADGKHLVSGSKAG-ELQCWD---------PQTGKPSGNPL----SGHKKWI 196
+ + + WS + +++ S L WD P+ + L GH I
Sbjct: 318 DEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKI 377
Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
+ SW P N P S S+D ++W ++
Sbjct: 378 SDFSWNP---NEPW-VICSVSEDNIMQVWQMA 405
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 23/144 (15%)
Query: 179 PQTGKPSG--NP---LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS----- 228
P PSG NP L GH+K G+SW P +L+ +SAS D +WD+S
Sbjct: 158 PSKPDPSGECNPDLRLRGHQKEGYGLSWNP-NLSG---HLLSASDDHTICLWDISAVPKE 213
Query: 229 --LRKCVICLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWET---TQGKLIRELKGHG 281
+ +GHT V V W + + + + D + +W+T K + H
Sbjct: 214 GKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHT 273
Query: 282 HWVNSLALS--TEYALRTGAFDHT 303
VN L+ + +E+ L TG+ D T
Sbjct: 274 AEVNCLSFNPYSEFILATGSADKT 297
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 20/152 (13%)
Query: 93 RIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL-NTQTPMFKCTGHK 150
R ++ S + HT V ++F+P LA+GS D TV LWDL N + + HK
Sbjct: 260 RSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHK 319
Query: 151 NWVLCIAWSADGKHLVSG------------SKAGELQ-CWDPQTGKPSGNPL-SGHKKWI 196
+ + + WS + +++ SK GE Q D + G P + GH I
Sbjct: 320 DEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKI 379
Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
+ SW P N P S S+D +IW ++
Sbjct: 380 SDFSWNP---NEPW-VICSVSEDNIMQIWQMA 407
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 33/170 (19%)
Query: 122 QLASGSGDTTVRLWDLNTQTPMFKC-------TGHKNWVLCIAWSADGKHLVSGSKAG-- 172
L S S D TV LWD+N K TGH V +AW HL+ S G
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAW-----HLLHESLFGSV 248
Query: 173 ----ELQCWDPQ---TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA--SKDGDAR 223
+L WD + T KPS + + H + +S+ P F+ A S D
Sbjct: 249 ADDQKLMIWDTRSNTTSKPS-HLVDAHTAEVNCLSFNPY------SEFILATGSADKTVA 301
Query: 224 IWDV-SLRKCVICLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWETTQ 270
+WD+ +L+ + H + V W + ++ + D + VW+ ++
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 86/230 (37%), Gaps = 61/230 (26%)
Query: 179 PQTGKPSG--NP---LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS----- 228
P PSG NP L GH+K G+SW + +SAS D +WD++
Sbjct: 160 PAKPDPSGECNPDLRLRGHQKEGYGLSWN----SNLSGHLLSASDDHTVCLWDINAGPKE 215
Query: 229 --LRKCVICLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWET---TQGKLIRELKGHG 281
+ +GH+ V V W + + + + D + +W+T T K + H
Sbjct: 216 GKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHT 275
Query: 282 HWVNSLALS--TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339
VN L+ + +E+ L TG S D
Sbjct: 276 AEVNCLSFNPYSEFILATG-------------------------------------SADK 298
Query: 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSIKLWN 388
T+ LW+ K H+ + V++SP + + AS+ D+ + +W+
Sbjct: 299 TVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 65/149 (43%), Gaps = 20/149 (13%)
Query: 93 RIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL-NTQTPMFKCTGHK 150
R ++ S + HT V ++F+P LA+GS D TV LWDL N + + HK
Sbjct: 260 RSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHK 319
Query: 151 NWVLCIAWSADGKHLVSG------------SKAGELQ-CWDPQTGKPSGNPL-SGHKKWI 196
+ + + WS + +++ SK GE Q D + G P + GH I
Sbjct: 320 DEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKI 379
Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIW 225
+ SW P N P S S+D +IW
Sbjct: 380 SDFSWNP---NEPW-VICSVSEDNIXQIW 404
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 33/170 (19%)
Query: 122 QLASGSGDTTVRLWDLNTQTPMFKC-------TGHKNWVLCIAWSADGKHLVSGSKAG-- 172
L S S D TV LWD+N K TGH V +AW HL+ S G
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAW-----HLLHESLFGSV 248
Query: 173 ----ELQCWDPQ---TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA--SKDGDAR 223
+L WD + T KPS + + H + +S+ P F+ A S D
Sbjct: 249 ADDQKLXIWDTRSNTTSKPS-HLVDAHTAEVNCLSFNPY------SEFILATGSADKTVA 301
Query: 224 IWDV-SLRKCVICLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWETTQ 270
+WD+ +L+ + H + V W + ++ + D + VW+ ++
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 86/230 (37%), Gaps = 61/230 (26%)
Query: 179 PQTGKPSG--NP---LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS----- 228
P PSG NP L GH+K G+SW + +SAS D +WD++
Sbjct: 160 PAKPDPSGECNPDLRLRGHQKEGYGLSWN----SNLSGHLLSASDDHTVCLWDINAGPKE 215
Query: 229 --LRKCVICLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWET---TQGKLIRELKGHG 281
+ +GH+ V V W + + + + D + +W+T T K + H
Sbjct: 216 GKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHT 275
Query: 282 HWVNSLALS--TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339
VN L+ + +E+ L TG S D
Sbjct: 276 AEVNCLSFNPYSEFILATG-------------------------------------SADK 298
Query: 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSIKLWN 388
T+ LW+ K H+ + V++SP + + AS+ D+ + +W+
Sbjct: 299 TVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 83/217 (38%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-- 161
H E + G++ A+ S D T++++++ +T TGH+ V + W+
Sbjct: 7 AHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
G L S S G++ W + G+ S + H + + W P H P + AS DG
Sbjct: 67 GTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPX--LLVASSDG 123
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWG-----GDGV---------IYTGSQDCTIK 264
+ + I + H + V W DG TG D +K
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
+W+ L L+GH WV +A S LR+
Sbjct: 184 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWN--GTTGKFVAVFRGHVGPVYQIRF 410
H + ++ G+ A+ S DK+IK++ G T K + GH GPV+++ +
Sbjct: 7 AHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 306 QYSSPEEMKKAALERYNKIKGN-APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN 364
++ E+ +A + K+K + E L+S S D + +W P+T + GH+ V
Sbjct: 127 NFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT-LIGHRATVT 185
Query: 365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP 404
+ G+ V SAS D +I+LW TG + F P
Sbjct: 186 DIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENP 225
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 91/250 (36%), Gaps = 51/250 (20%)
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW--GGDGVIYTGSQDCTIKVWET 268
RRF+ + +GD ++ D + H +T +K+ G+ +I + SQD +K+W
Sbjct: 110 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALI-SSSQDMQLKIWSV 168
Query: 269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328
G R L GH V +A+ ++R
Sbjct: 169 KDGSNPRTLIGHRATVTDIAI----------------------------IDR-------- 192
Query: 329 PERLVSGSDDFTMFLWEPAVSKQPKT---RMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385
++S S D T+ LWE T + H + + F + + S K
Sbjct: 193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN 252
Query: 386 LWNGTTGKFVAVFRGHVGPVYQIR--FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL 443
L GT GK+V GHV V + F + PS F C C SL ++
Sbjct: 253 LEFGTYGKYVIA--GHVSGVITVHNVFSKEQTIQLPSKFTC-----SCNSLTVDGNNANY 305
Query: 444 LLSGSKDSTL 453
+ +G ++ L
Sbjct: 306 IYAGYENGML 315
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL 165
H + + F P G L S S D +++W + + GH+ V IA G+++
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 196
Query: 166 VSGSKAGELQCWDPQTG 182
+S S G ++ W+ TG
Sbjct: 197 LSASLDGTIRLWECGTG 213
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 112/274 (40%), Gaps = 31/274 (11%)
Query: 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180
R+ G+ + +++ D N H + + + + G+ L+S S+ +L+ W +
Sbjct: 110 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 169
Query: 181 TGKPSGNP--LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG 238
G NP L GH+ +T I+ + R +SAS DG R+W+ C +G
Sbjct: 170 DGS---NPRTLIGHRATVTDIA-----IIDRGRNVLSASLDGTIRLWE--------CGTG 213
Query: 239 HTLAVTCVKWG-GDGV----IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY 293
T+ K DGV ++ G+ ++ + + L E +G +V + +S
Sbjct: 214 TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNL--EFGTYGKYVIAGHVSGVI 271
Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353
+ Q S +L + GN + +G ++ + W+ + P
Sbjct: 272 TVHNVFSKEQTIQLPSKFTCSCNSL----TVDGNNANYIYAGYENGMLAQWDLRSPECPV 327
Query: 354 TRMTGHQQL-VNHVYFSPDGQWVASASFDKSIKL 386
++ +N+VYF+ G S+ FD SIKL
Sbjct: 328 GEFLINEGTPINNVYFAA-GALFVSSGFDTSIKL 360
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM 143
T+ GH V +A GR + S S D T+RLW+ T T +
Sbjct: 176 TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 306 QYSSPEEMKKAALERYNKIKGN-APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN 364
++ E+ +A + K+K + E L+S S D + +W P+T + GH+ V
Sbjct: 124 NFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT-LIGHRATVT 182
Query: 365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP 404
+ G+ V SAS D +I+LW TG + F P
Sbjct: 183 DIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENP 222
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 91/250 (36%), Gaps = 51/250 (20%)
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW--GGDGVIYTGSQDCTIKVWET 268
RRF+ + +GD ++ D + H +T +K+ G+ +I + SQD +K+W
Sbjct: 107 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALI-SSSQDMQLKIWSV 165
Query: 269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328
G R L GH V +A+ ++R
Sbjct: 166 KDGSNPRTLIGHRATVTDIAI----------------------------IDR-------- 189
Query: 329 PERLVSGSDDFTMFLWEPAVSKQPKT---RMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385
++S S D T+ LWE T + H + + F + + S K
Sbjct: 190 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN 249
Query: 386 LWNGTTGKFVAVFRGHVGPVYQIR--FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL 443
L GT GK+V GHV V + F + PS F C C SL ++
Sbjct: 250 LEFGTYGKYVIA--GHVSGVITVHNVFSKEQTIQLPSKFTC-----SCNSLTVDGNNANY 302
Query: 444 LLSGSKDSTL 453
+ +G ++ L
Sbjct: 303 IYAGYENGML 312
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL 165
H + + F P G L S S D +++W + + GH+ V IA G+++
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 193
Query: 166 VSGSKAGELQCWDPQTG 182
+S S G ++ W+ TG
Sbjct: 194 LSASLDGTIRLWECGTG 210
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 112/274 (40%), Gaps = 31/274 (11%)
Query: 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180
R+ G+ + +++ D N H + + + + G+ L+S S+ +L+ W +
Sbjct: 107 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 166
Query: 181 TGKPSGNP--LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG 238
G NP L GH+ +T I+ + R +SAS DG R+W+ C +G
Sbjct: 167 DGS---NPRTLIGHRATVTDIA-----IIDRGRNVLSASLDGTIRLWE--------CGTG 210
Query: 239 HTLAVTCVKWG-GDGV----IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY 293
T+ K DGV ++ G+ ++ + + L E +G +V + +S
Sbjct: 211 TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNL--EFGTYGKYVIAGHVSGVI 268
Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353
+ Q S +L + GN + +G ++ + W+ + P
Sbjct: 269 TVHNVFSKEQTIQLPSKFTCSCNSL----TVDGNNANYIYAGYENGMLAQWDLRSPECPV 324
Query: 354 TRMTGHQQL-VNHVYFSPDGQWVASASFDKSIKL 386
++ +N+VYF+ G S+ FD SIKL
Sbjct: 325 GEFLINEGTPINNVYFAA-GALFVSSGFDTSIKL 357
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM 143
T+ GH V +A GR + S S D T+RLW+ T T +
Sbjct: 173 TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 213
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 83/204 (40%), Gaps = 25/204 (12%)
Query: 102 ATIAGHTEAVLSVAFSPDGRQ-LASGSGDTTVRLWDLN--TQTPMF-------KCTGHKN 151
A + H+ +V +V F+ LASG + + +WD+N T++P + +
Sbjct: 107 ARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD 166
Query: 152 WVLCIAWSADGKHLVSGSKAGEL-QCWDPQTGKPS-----GNPLSGHKKWITGISWEPVH 205
V+ +AW+ H+ + + + WD + K +P SG K+ ++ + W P +
Sbjct: 167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN 226
Query: 206 LNAPCRRFVSASKDGDARIWDVSLRKCVICL----SGHTLAVTCVKW--GGDGVIYTGSQ 259
R + D D I LR L GH + + W + ++ + +
Sbjct: 227 ---STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR 283
Query: 260 DCTIKVWETTQGKLIRELKGHGHW 283
D T+ +W + + + G+W
Sbjct: 284 DNTVLLWNPESAEQLSQFPARGNW 307
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 85/191 (44%), Gaps = 36/191 (18%)
Query: 140 QTPMFKC-----TGHK--NWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGK------PS 185
Q P FK T HK ++V + +S D G+ +++ ++ C+D ++G+
Sbjct: 189 QGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD 248
Query: 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV-------ICLSG 238
P+ G I +SW ++F + D R+WDV+ KCV L
Sbjct: 249 QEPVQGG---IFALSW------LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 299
Query: 239 HTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG 298
+ V G+G I + S D T+ +E ++++ + GH + +L ++ L +G
Sbjct: 300 QQVGVVAT---GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVN---PLISG 353
Query: 299 AFDHTGKQYSS 309
++D ++SS
Sbjct: 354 SYDGRIMEWSS 364
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHK----NWVLCIAWSADGKHLVSGSKAGEL 174
D ++ A+ D T+R+WD+ T + K T K N + + + +G+ ++S S G L
Sbjct: 263 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTL 321
Query: 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
++ + +SGH K IT ++ P+ +S S DG W S
Sbjct: 322 NFYELGHDEVL-KTISGHNKGITALTVNPL---------ISGSYDGRIMEWSSS 365
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 97 VNRCSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWD-------LNTQTPMFKCTG 148
V++ + GHT VL +A+ P + +ASGS D TV +W+ L + P+ G
Sbjct: 70 VDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG 129
Query: 149 HKNWVLCIAWSADGKH-LVSGSKAGELQCWDPQTG 182
H V +AW ++ L+S + WD TG
Sbjct: 130 HTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTG 164
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 231 KCVICLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWETTQGKLIRELK 278
K V + GHT V + W D VI +GS+DCT+ VWE G L+ L+
Sbjct: 72 KNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR 121
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 15/114 (13%)
Query: 180 QTGKPSGN-PL-SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-------LR 230
+TG+ N PL GH + I+W P + N S S+D +W++ LR
Sbjct: 66 KTGRVDKNVPLVXGHTAPVLDIAWXPHNDNV----IASGSEDCTVMVWEIPDGGLVLPLR 121
Query: 231 KCVICLSGHTLAVTCVKW--GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGH 282
+ VI L GHT V V W V+ + D I VW+ G + L H
Sbjct: 122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVH 175
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQ-LASGSGDTTVRLWDLNTQTPMFKCTG--HK 150
+ P+ T+ GHT+ V VA+ P + L S D + +WD+ T + H
Sbjct: 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHP 176
Query: 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182
+ + + WS DG + + + ++ +P+ G
Sbjct: 177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRKG 208
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 32/131 (24%)
Query: 332 LVSGSDDFTMFLWEPAVS------KQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSI 384
+ SGS+D T+ +WE ++P + GH + V V + P Q V SA D I
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVI 156
Query: 385 KLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL 444
+W+ TG V V +P Y V WS D L+
Sbjct: 157 LVWDVGTGAAVLTLGPDV---------------HPDTIYSV----------DWSRDGALI 191
Query: 445 LSGSKDSTLKV 455
+ +D ++V
Sbjct: 192 CTSCRDKRVRV 202
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 18/210 (8%)
Query: 212 RFVSASKDGDARIW--DVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIK---VW 266
+ S S+DG R+W D V+ L C + +++ G +D I ++
Sbjct: 31 KVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLF-GGKDTXINGVPLF 89
Query: 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN---- 322
T+ + L GH V SL+ + +G++D T K + E L+ +N
Sbjct: 90 ATSGEDPLYTLIGHQGNVCSLSFQDGVVI-SGSWDKTAKVW--KEGSLVYNLQAHNASVW 146
Query: 323 --KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380
K+ + + ++ S D T+ LW+ K KT H +V H+ DG ++ S S
Sbjct: 147 DAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGHFI-SCSN 203
Query: 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410
D IKL + TG + + GH VY I+
Sbjct: 204 DGLIKLVDXHTGDVLRTYEGHESFVYCIKL 233
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 15/173 (8%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
T+ GH V S++F DG + SGS D T ++W + + W + ++
Sbjct: 99 TLIGHQGNVCSLSF-QDG-VVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSEN 156
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR--RFVSASKDG 220
K L + S ++ W Q K K +GI + V A F+S S DG
Sbjct: 157 KFL-TASADKTIKLW--QNDKV--------IKTFSGIHNDVVRHLAVVDDGHFISCSNDG 205
Query: 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKL 273
++ D + GH V C+K +G I + +D T+++W G L
Sbjct: 206 LIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSL 258
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 15/181 (8%)
Query: 113 SVAFSPDGRQLASGSGDTTVR---LWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS 169
SV + + L G DT + L+ + + P++ GH+ V +++ DG ++SGS
Sbjct: 64 SVCYDSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ-DGV-VISGS 121
Query: 170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL 229
+ W + G N L H + W+ ++ +F++AS D ++W
Sbjct: 122 WDKTAKVW--KEGSLVYN-LQAHNASV----WDAKVVSFSENKFLTASADKTIKLWQND- 173
Query: 230 RKCVICLSG-HTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA 288
K + SG H V + DG + S D IK+ + G ++R +GH +V +
Sbjct: 174 -KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIK 232
Query: 289 L 289
L
Sbjct: 233 L 233
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 81/183 (44%), Gaps = 36/183 (19%)
Query: 140 QTPMFKC-----TGHK--NWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGK------PS 185
Q P FK T HK ++V + +S D G+ +++ ++ C+D ++G+
Sbjct: 189 QGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD 248
Query: 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV-------ICLSG 238
P+ G I +SW ++F + D R+WDV+ KCV L
Sbjct: 249 QEPVQGG---IFALSW------LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 299
Query: 239 HTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG 298
+ V G+G I + S D T+ +E ++++ + GH + +L ++ L +G
Sbjct: 300 QQVGVVAT---GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVN---PLISG 353
Query: 299 AFD 301
++D
Sbjct: 354 SYD 356
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHK----NWVLCIAWSADGKHLVSGSKAGEL 174
D ++ A+ D T+R+WD+ T + K T K N + + + +G+ ++S S G L
Sbjct: 263 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTL 321
Query: 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW 225
++ + +SGH K IT ++ P+ +S S DG W
Sbjct: 322 NFYELGHDEVL-KTISGHNKGITALTVNPL---------ISGSYDGRIXEW 362
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 97 VNRCSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWD-------LNTQTPMFKCTG 148
V++ + GHT VL +A+ P + +ASGS D TV +W+ L + P+ G
Sbjct: 70 VDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG 129
Query: 149 HKNWVLCIAWSADGKH-LVSGSKAGELQCWDPQTG 182
H V +AW ++ L+S + WD TG
Sbjct: 130 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG 164
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 231 KCVICLSGHTLAVTCVKW--GGDGVIYTGSQDCTIKVWETTQGKLIRELK 278
K V + GHT V + W D VI +GS+DCT+ VWE G L+ L+
Sbjct: 72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR 121
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 15/114 (13%)
Query: 180 QTGKPSGN-PL-SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-------LR 230
+TG+ N PL GH + I+W P + N S S+D +W++ LR
Sbjct: 66 KTGRVDKNVPLVCGHTAPVLDIAWCPHNDNV----IASGSEDCTVMVWEIPDGGLVLPLR 121
Query: 231 KCVICLSGHTLAVTCVKW--GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGH 282
+ VI L GHT V V W V+ + D I VW+ G + L H
Sbjct: 122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH 175
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQ-LASGSGDTTVRLWDLNTQTPMFKCTG--HK 150
+ P+ T+ GHT+ V VA+ P + L S D + +WD+ T + H
Sbjct: 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP 176
Query: 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182
+ + + WS DG + + + ++ +P+ G
Sbjct: 177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRKG 208
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 32/131 (24%)
Query: 332 LVSGSDDFTMFLWEPAVS------KQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSI 384
+ SGS+D T+ +WE ++P + GH + V V + P Q V SA D I
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156
Query: 385 KLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL 444
+W+ TG V V +P Y V WS D L+
Sbjct: 157 LVWDVGTGAAVLTLGPDV---------------HPDTIYSV----------DWSRDGALI 191
Query: 445 LSGSKDSTLKV 455
+ +D ++V
Sbjct: 192 CTSCRDKRVRV 202
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221
G L++GS A +++CW+ Q SG + ++ TG + V + + +AS D
Sbjct: 54 GNFLIAGSWANDVRCWEVQD---SGQTIPKAQQMHTGPVLD-VCWSDDGSKVFTASCDKT 109
Query: 222 ARIWDVSLRKCVICLSGHTLAVTCVKW---GGDGVIYTGSQDCTIKVWET 268
A++WD+S + I ++ H V + W + TGS D T+K W+T
Sbjct: 110 AKMWDLSSNQ-AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW--SADGKH 164
HT VL V +S DG ++ + S D T ++WDL++ + + H V I W + +
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYSC 143
Query: 165 LVSGSKAGELQCWDPQTGKP 184
+++GS L+ WD ++ P
Sbjct: 144 VMTGSWDKTLKFWDTRSSNP 163
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
Query: 196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI--CLSGHTLAVTCVKWGGDGV 253
I +S+ P L P ++ S D R W+V I HT V V W DG
Sbjct: 42 IGCLSFSPPTL--PGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 99
Query: 254 -IYTGSQDCTIKVWETTQGKLIRELKGHG-----HWVNSLALSTEYALRTGAFDHTGK 305
++T S D T K+W+ + + I+ + HW+ + S + TG++D T K
Sbjct: 100 KVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYS---CVMTGSWDKTLK 154
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 332 LVSGSDDFTMFLWEPAVSKQ--PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
L++GS + WE S Q PK + H V V +S DG V +AS DK+ K+W+
Sbjct: 57 LIAGSWANDVRCWEVQDSGQTIPKAQQM-HTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115
Query: 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS 441
++ + + + + H PV + I+ + P N+ CV+ S +L W S
Sbjct: 116 SSNQAIQIAQ-HDAPV-----KTIHWIKAP-NYSCVMTGSWDKTLKFWDTRS 160
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 80/178 (44%), Gaps = 30/178 (16%)
Query: 139 TQTPMFKCTGHK--NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWI 196
++ P+ K H+ + WS GK++++G K G++ +D + + H+K I
Sbjct: 162 SEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSI 221
Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVS----LRKCVICLSGHTLAVTCVKWGGDG 252
+ + + P F+++S+D ++ + DVS L+K +T +T +K +
Sbjct: 222 SDMQFSP-----DLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLK---EF 273
Query: 253 VIYTGSQDC-TIKVWETTQGKL------------IRELKGHGHWVNSLALS---TEYA 294
+I G Q+ + +GK I ++GH +N++A+S T YA
Sbjct: 274 IILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYA 331
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
S ++TGH++ + V ++ +G + S S D S +W G+ + GH G ++ I
Sbjct: 21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSI 80
Query: 409 RFELIYCFRYPSNFYCV 425
+ CF YCV
Sbjct: 81 DVD---CFTK----YCV 90
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW 248
L+GH++ +T + + N S SKD A +W + + L GHT + W
Sbjct: 28 LTGHERPLTQVKY-----NKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTI----W 78
Query: 249 GGDGVIYT-----GSQDCTIKVWETTQGKLI 274
D +T GS D +IK+W+ + G+ +
Sbjct: 79 SIDVDCFTKYCVTGSADYSIKLWDVSNGQCV 109
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 234 ICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-- 290
I L+GH +T VK+ +G ++++ S+D + VW + G+ + L GH + S+ +
Sbjct: 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF 85
Query: 291 TEYALRTGAFDHTGK 305
T+Y + TG+ D++ K
Sbjct: 86 TKYCV-TGSADYSIK 99
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 34/80 (42%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
+ GH + V ++ +G L S S D++ +W + GH + I K
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 164 HLVSGSKAGELQCWDPQTGK 183
+ V+GS ++ WD G+
Sbjct: 88 YCVTGSADYSIKLWDVSNGQ 107
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 348 VSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVF---RGHVG 403
++ Q GH +N + F P D + S S D +++LWN T VA+F GH
Sbjct: 139 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 198
Query: 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCM--SLYSWSADSRLLLSGSKDS 451
V ++L+ MSC M SL W +S+ +++ K+S
Sbjct: 199 EVLSADYDLL----------GEKIMSCGMDHSLKLWRINSKRMMNAIKES 238
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 68/349 (19%), Positives = 127/349 (36%), Gaps = 83/349 (23%)
Query: 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT----GHKNWVLCIAWSA 160
+GH + V V + GR +A+ S D ++++ L+ T ++ + H + ++ I W++
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 161 D--GKHLVSGSKAGELQCW--DPQTGKPSGN------PLSGHKKWITGISWEPVHL---- 206
G+ + S S ++ W DP + SG L+ K + + + P HL
Sbjct: 68 PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127
Query: 207 ----NAPCRRFVSASKDGDARIWDVSLRKCVICL--SGHTLAVTCVKWG----------- 249
N R A + D R W ++ V+ + + H + C+ W
Sbjct: 128 ACLGNDGILRLYDALEPSDLRSWTLTSEXKVLSIPPANHLQSDFCLSWCPSRFSPEKLAV 187
Query: 250 ---GDGVIYTGSQDCTIKVWETTQG--KLIRELK---GHGHWVNSLA------------- 288
+IY +D + V G LIR + G W +A
Sbjct: 188 SALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKI 247
Query: 289 ------LSTEYAL-RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341
L++E +L + FD++ + + E +++ N L+S DD
Sbjct: 248 TEKLSPLASEESLTNSNXFDNSADVDXDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG 307
Query: 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390
+W V ++ G ++SA D ++LW T
Sbjct: 308 EVWS--------------------VSWNLTGTILSSAGDDGKVRLWKAT 336
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 348 VSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVF---RGHVG 403
++ Q GH +N + F P D + S S D +++LWN T VA+F GH
Sbjct: 102 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 161
Query: 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCM--SLYSWSADSRLLLSGSKDS 451
V ++L+ MSC M SL W +S+ +++ K+S
Sbjct: 162 EVLSADYDLL----------GEKIMSCGMDHSLKLWRINSKRMMNAIKES 201
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 348 VSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVF---RGHVG 403
++ Q GH +N + F P D + S S D +++LWN T VA+F GH
Sbjct: 102 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 161
Query: 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCM--SLYSWSADSRLLLSGSKDS 451
V ++L+ MSC M SL W +S+ +++ K+S
Sbjct: 162 EVLSADYDLL----------GEKIMSCGMDHSLKLWRINSKRMMNAIKES 201
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 348 VSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVF---RGHVG 403
++ Q GH +N + F P D + S S D +++LWN T VA+F GH
Sbjct: 98 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 157
Query: 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCM--SLYSWSADSRLLLSGSKDS 451
V ++L+ MSC M SL W +S+ +++ K+S
Sbjct: 158 EVLSADYDLL----------GEKIMSCGMDHSLKLWRINSKRMMNAIKES 197
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 348 VSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVF---RGHVG 403
++ Q GH +N + F P D + S S D +++LWN T VA+F GH
Sbjct: 103 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 162
Query: 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCM--SLYSWSADSRLLLSGSKDS 451
V ++L+ MSC M SL W +S+ +++ K+S
Sbjct: 163 EVLSADYDLL----------GEKIMSCGMDHSLKLWRINSKRMMNAIKES 202
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 68/349 (19%), Positives = 127/349 (36%), Gaps = 83/349 (23%)
Query: 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT----GHKNWVLCIAWSA 160
+GH + V V + GR +A+ S D ++++ L+ T ++ + H + ++ I W++
Sbjct: 6 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 65
Query: 161 D--GKHLVSGSKAGELQCW--DPQTGKPSGN------PLSGHKKWITGISWEPVHL---- 206
G+ + S S ++ W DP + SG L+ K + + + P HL
Sbjct: 66 PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 125
Query: 207 ----NAPCRRFVSASKDGDARIWDVSLRKCVICL--SGHTLAVTCVKWG----------- 249
N R A + D R W ++ V+ + + H + C+ W
Sbjct: 126 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAV 185
Query: 250 ---GDGVIYTGSQDCTIKVWETTQG--KLIRELK---GHGHWVNSLA------------- 288
+IY +D + V G LIR + G W +A
Sbjct: 186 SALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKI 245
Query: 289 ------LSTEYAL-RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341
L++E +L + FD++ + + E +++ N L+S DD
Sbjct: 246 TEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG 305
Query: 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390
+W V ++ G ++SA D ++LW T
Sbjct: 306 EVWS--------------------VSWNLTGTILSSAGDDGKVRLWKAT 334
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 68/349 (19%), Positives = 127/349 (36%), Gaps = 83/349 (23%)
Query: 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT----GHKNWVLCIAWSA 160
+GH + V V + GR +A+ S D ++++ L+ T ++ + H + ++ I W++
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 161 D--GKHLVSGSKAGELQCW--DPQTGKPSGN------PLSGHKKWITGISWEPVHL---- 206
G+ + S S ++ W DP + SG L+ K + + + P HL
Sbjct: 68 PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127
Query: 207 ----NAPCRRFVSASKDGDARIWDVSLRKCVICL--SGHTLAVTCVKWG----------- 249
N R A + D R W ++ V+ + + H + C+ W
Sbjct: 128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAV 187
Query: 250 ---GDGVIYTGSQDCTIKVWETTQG--KLIRELK---GHGHWVNSLA------------- 288
+IY +D + V G LIR + G W +A
Sbjct: 188 SALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKI 247
Query: 289 ------LSTEYAL-RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341
L++E +L + FD++ + + E +++ N L+S DD
Sbjct: 248 TEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG 307
Query: 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390
+W V ++ G ++SA D ++LW T
Sbjct: 308 EVWS--------------------VSWNLTGTILSSAGDDGKVRLWKAT 336
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 16/126 (12%)
Query: 115 AFSPDGRQLASGSGDTTVRLWDLNT-QTPMFKCTGHKNWV------LCIAWSADGKHLVS 167
A S R LA+G + +W+L + P++ GHK + + +V+
Sbjct: 75 ATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVT 134
Query: 168 GSKAGELQCWDP-QTGKPSGN--PLSGHKK---WITGISWEPVHLNAPCRRFVSASKDGD 221
GS+ G ++ WDP Q P N P+ G K W N R + +GD
Sbjct: 135 GSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFG---NAYNQEERVVCAGYDNGD 191
Query: 222 ARIWDV 227
+++D+
Sbjct: 192 IKLFDL 197
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG---KHLVSGSKA 171
A++ + R + +G + ++L+DL ++ T KN V + + LV+ S
Sbjct: 175 AYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLE 233
Query: 172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW 225
G+ +D +T P+ S +K W+ HL F++A G +W
Sbjct: 234 GKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLW 287
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK--FVAVFRGHVGPVYQIRF 410
T T H+ +++ G +A+ S D+S+K+++ G +A RGH GPV+Q+ +
Sbjct: 6 NTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAW 65
>pdb|2OIT|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Proto-Oncogene Nup214CAN
Length = 434
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 90 AVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT------PM 143
AV ++ + AT+ T AV SV +SP G+QLA G + TV + Q P
Sbjct: 175 AVLQVTETVKVCATLPS-TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPP 233
Query: 144 FKCTGHKNWVLCIAW 158
F + H VL + W
Sbjct: 234 FYESDHPVRVLDVLW 248
>pdb|3FMO|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|C Chain C, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 450
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 90 AVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT------PM 143
AV ++ + AT+ T AV SV +SP G+QLA G + TV + Q P
Sbjct: 175 AVLQVTETVKVCATLPS-TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPP 233
Query: 144 FKCTGHKNWVLCIAW 158
F + H VL + W
Sbjct: 234 FYESDHPVRVLDVLW 248
>pdb|3FHC|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 405
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 90 AVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT------PM 143
AV ++ + AT+ T AV SV +SP G+QLA G + TV + Q P
Sbjct: 175 AVLQVTETVKVCATLPS-TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPP 233
Query: 144 FKCTGHKNWVLCIAW 158
F + H VL + W
Sbjct: 234 FYESDHPVRVLDVLW 248
>pdb|3TC3|A Chain A, Crystal Structure Of Sacuvde
pdb|3TC3|B Chain B, Crystal Structure Of Sacuvde
pdb|4GLE|A Chain A, Sacuvde In Complex With 6-4pp-containing Dna
Length = 310
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 274 IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333
I ELK H ++S+ + + + H G + EE +E + K+ N +RLV
Sbjct: 140 IMELKYHADLLDSMGIEGKIQI------HVGSSMNGKEESLNRFIENFRKLPSNISKRLV 193
Query: 334 SGSDD 338
+DD
Sbjct: 194 IENDD 198
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 220 GDARIWDVSLR----KCVICLSGHTLAVTCVKW--GGDGVIYTGSQDCTIKVWETTQGKL 273
G +IWD + ++ L+G + + CV V+ TG QD + +W+ QG +
Sbjct: 212 GQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTM 271
Query: 274 -IRELKGH 280
+ LK H
Sbjct: 272 PVSLLKAH 279
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 18/113 (15%)
Query: 87 QPQAVFRIRPVNRCSA--TIAGHTEAVLSVAFSPDGRQLASGSGDTTV------------ 132
Q + +RP+ + ++ ++ ++ SV FSP G LA +
Sbjct: 220 QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE 279
Query: 133 RLWDLNTQTPMFKCT----GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181
R+ L+ T + + H +WV+ ++++ G+ L S G+L+ WD +T
Sbjct: 280 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 332
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 28/139 (20%)
Query: 123 LASGSGDTTVRLWDLNTQTPMFK------CTGHKNWVLCIAWSADGKHLVSGSKAGELQC 176
+A+G + TV++ +L+T P++ + N + + +S G L + C
Sbjct: 210 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 269
Query: 177 ---WDPQTGKPSGNPLS-------------GHKKWITGISWEPVHLNAPCRRFVSASKDG 220
++ + G+ G+ LS H W+ +S+ N SA DG
Sbjct: 270 ITLYETEFGERIGS-LSVPTHSSQASLGEFAHSSWVMSLSF-----NDSGETLCSAGWDG 323
Query: 221 DARIWDVSLRKCVICLSGH 239
R WDV ++ + L+ H
Sbjct: 324 KLRFWDVKTKERITTLNMH 342
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 18/113 (15%)
Query: 87 QPQAVFRIRPVNRCSA--TIAGHTEAVLSVAFSPDGRQLASGSGDTTV------------ 132
Q + +RP+ + ++ ++ ++ SV FSP G LA +
Sbjct: 210 QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE 269
Query: 133 RLWDLNTQTPMFKCT----GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181
R+ L+ T + + H +WV+ ++++ G+ L S G+L+ WD +T
Sbjct: 270 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 322
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 28/139 (20%)
Query: 123 LASGSGDTTVRLWDLNTQTPMFK------CTGHKNWVLCIAWSADGKHLVSGSKAGELQC 176
+A+G + TV++ +L+T P++ + N + + +S G L + C
Sbjct: 200 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 259
Query: 177 ---WDPQTGKPSGNPLS-------------GHKKWITGISWEPVHLNAPCRRFVSASKDG 220
++ + G+ G+ LS H W+ +S+ N SA DG
Sbjct: 260 ITLYETEFGERIGS-LSVPTHSSQASLGEFAHSSWVMSLSF-----NDSGETLCSAGWDG 313
Query: 221 DARIWDVSLRKCVICLSGH 239
R WDV ++ + L+ H
Sbjct: 314 KLRFWDVKTKERITTLNMH 332
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 107 HTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNT---QTPMFKCTGHKNWVLCIAWSADG 162
H + V VA +P LA+ S D TV++WDL + H++ V +S DG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 163 KHLVSGSKAGELQCW 177
L++ + E++ +
Sbjct: 309 ARLLTTDQKSEIRVY 323
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 107 HTEAVLSVAFSPDGRQ-LASGSGDTTVRLWDLNT---QTPMFKCTGHKNWVLCIAWSADG 162
H + V VA +P LA+ S D TV++WDL + H++ V +S DG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 163 KHLVSGSKAGELQCW 177
L++ + E++ +
Sbjct: 309 ARLLTTDQKSEIRVY 323
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 107 HTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNT---QTPMFKCTGHKNWVLCIAWSADG 162
H + V VA +P LA+ S D TV++WDL + H++ V +S DG
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Query: 163 KHLVSGSKAGELQCW 177
L++ + E++ +
Sbjct: 310 ARLLTTDQKSEIRVY 324
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 8/100 (8%)
Query: 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGK-PSGNPLSGHKKWITGISWEPVHLNAPCR 211
+ C AW+ D + E+ ++ K + L H +TGI W P
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAP-----DSN 65
Query: 212 RFVSASKDGDARIWDVSLR--KCVICLSGHTLAVTCVKWG 249
R V+ D +A +W + R K + + A CV+W
Sbjct: 66 RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA 105
>pdb|4BAA|A Chain A, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
pdb|4BAA|B Chain B, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
pdb|4BAA|C Chain C, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
pdb|4BAA|D Chain D, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
Length = 705
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 273 LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321
LI ++K H + S L E+ LR+ F ++Y S +++KK +RY
Sbjct: 293 LIHKVKPHPGQIESAEL-LEWLLRSSPFQELSREYYSIDKLKKPKQDRY 340
>pdb|2YII|A Chain A, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|2YII|B Chain B, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|2YII|C Chain C, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|2YII|D Chain D, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|4BAB|A Chain A, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
pdb|4BAB|B Chain B, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
pdb|4BAB|C Chain C, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
pdb|4BAB|D Chain D, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
Length = 705
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 273 LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321
LI ++K H + S L E+ LR+ F ++Y S +++KK +RY
Sbjct: 293 LIHKVKPHPGQIESAEL-LEWLLRSSPFQELSREYYSIDKLKKPKQDRY 340
>pdb|3NZ4|A Chain A, Crystal Structure Of A Taxus Phenylalanine Aminomutase
pdb|3NZ4|B Chain B, Crystal Structure Of A Taxus Phenylalanine Aminomutase
Length = 696
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 273 LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321
LI ++K H + S L E+ LR+ F ++Y S +++KK +RY
Sbjct: 273 LIHKVKPHPGQIESAEL-LEWLLRSSPFQDLSREYYSIDKLKKPKQDRY 320
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 359 HQQLVNHVYFSPDGQWV-ASASFDKSIKLWN 388
H+ V H F+P W+ A++S D ++KLW+
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWD 232
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 359 HQQLVNHVYFSPDGQWV-ASASFDKSIKLWN 388
H+ V H F+P W+ A++S D ++KLW+
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWD 233
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,459,578
Number of Sequences: 62578
Number of extensions: 696031
Number of successful extensions: 3156
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1443
Number of HSP's gapped (non-prelim): 695
length of query: 456
length of database: 14,973,337
effective HSP length: 102
effective length of query: 354
effective length of database: 8,590,381
effective search space: 3040994874
effective search space used: 3040994874
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)