Query 012799
Match_columns 456
No_of_seqs 903 out of 3670
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 06:26:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012799.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012799hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 6.1E-83 1.3E-87 524.5 36.0 429 1-456 3-436 (480)
2 KOG0313 Microtubule binding pr 100.0 7.7E-55 1.7E-59 358.5 34.9 369 8-455 5-414 (423)
3 KOG0271 Notchless-like WD40 re 100.0 2E-53 4.2E-58 350.6 27.4 312 74-456 111-478 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 2.5E-52 5.4E-57 348.3 24.2 281 106-456 173-457 (459)
5 KOG0286 G-protein beta subunit 100.0 1.1E-48 2.5E-53 311.5 32.6 286 102-456 49-342 (343)
6 KOG0272 U4/U6 small nuclear ri 100.0 6.6E-46 1.4E-50 310.0 22.4 270 77-388 174-458 (459)
7 KOG0295 WD40 repeat-containing 100.0 5.2E-45 1.1E-49 299.0 24.6 307 96-456 96-403 (406)
8 KOG0279 G protein beta subunit 100.0 1E-43 2.2E-48 281.6 29.5 286 101-456 8-310 (315)
9 KOG0315 G-protein beta subunit 100.0 1.3E-43 2.8E-48 276.3 28.3 266 121-456 11-285 (311)
10 KOG0285 Pleiotropic regulator 100.0 7.5E-43 1.6E-47 285.8 26.9 296 97-456 140-436 (460)
11 KOG0284 Polyadenylation factor 100.0 3.2E-44 6.9E-49 298.6 18.7 282 105-456 93-377 (464)
12 KOG0318 WD40 repeat stress pro 100.0 1.4E-41 3E-46 291.8 32.6 348 75-456 144-557 (603)
13 KOG0265 U5 snRNP-specific prot 100.0 5.4E-42 1.2E-46 274.5 27.6 286 101-455 40-334 (338)
14 KOG0273 Beta-transducin family 100.0 5.5E-42 1.2E-46 290.4 28.3 284 108-455 235-519 (524)
15 KOG0296 Angio-associated migra 100.0 1.6E-41 3.6E-46 278.7 30.2 318 100-455 56-394 (399)
16 KOG0273 Beta-transducin family 100.0 2.5E-41 5.4E-46 286.4 29.0 281 105-456 175-479 (524)
17 KOG0293 WD40 repeat-containing 100.0 2.7E-41 6E-46 281.6 24.8 288 98-456 214-510 (519)
18 cd00200 WD40 WD40 domain, foun 100.0 2.2E-39 4.7E-44 287.1 38.1 286 101-456 2-288 (289)
19 KOG0315 G-protein beta subunit 100.0 1E-39 2.2E-44 254.7 30.0 275 90-408 20-306 (311)
20 KOG0279 G protein beta subunit 100.0 3.5E-40 7.6E-45 261.5 26.5 254 96-390 51-313 (315)
21 KOG0282 mRNA splicing factor [ 100.0 7.2E-42 1.6E-46 290.7 16.8 293 94-456 200-502 (503)
22 KOG0645 WD40 repeat protein [G 100.0 3.9E-39 8.6E-44 254.5 31.0 281 101-456 7-308 (312)
23 KOG0263 Transcription initiati 100.0 2.4E-41 5.1E-46 304.5 19.9 276 100-456 370-646 (707)
24 KOG0266 WD40 repeat-containing 100.0 2.8E-39 6E-44 299.2 31.8 287 101-456 151-451 (456)
25 KOG0286 G-protein beta subunit 100.0 1.3E-38 2.8E-43 254.2 28.2 244 144-456 49-300 (343)
26 KOG0319 WD40-repeat-containing 100.0 5.7E-39 1.2E-43 286.4 28.4 328 96-456 92-574 (775)
27 KOG0291 WD40-repeat-containing 100.0 4.7E-38 1E-42 281.1 32.9 295 99-456 136-505 (893)
28 KOG0316 Conserved WD40 repeat- 100.0 4.6E-38 9.9E-43 243.5 26.1 277 100-449 9-290 (307)
29 KOG0291 WD40-repeat-containing 100.0 1.4E-37 3E-42 278.1 33.2 309 95-455 294-608 (893)
30 PLN00181 protein SPA1-RELATED; 100.0 8.8E-37 1.9E-41 303.7 38.6 295 103-456 478-790 (793)
31 KOG0281 Beta-TrCP (transducin 100.0 2E-39 4.4E-44 264.9 15.4 267 107-456 196-474 (499)
32 KOG0284 Polyadenylation factor 100.0 4.3E-39 9.4E-44 268.1 15.5 268 80-389 98-379 (464)
33 KOG0276 Vesicle coat complex C 100.0 3.3E-37 7.2E-42 270.2 27.3 267 101-408 6-275 (794)
34 KOG0263 Transcription initiati 100.0 4.3E-37 9.2E-42 277.1 24.9 209 100-350 443-652 (707)
35 KOG0319 WD40-repeat-containing 100.0 5.5E-36 1.2E-40 267.4 28.2 290 98-456 313-616 (775)
36 KOG0278 Serine/threonine kinas 100.0 2.9E-37 6.3E-42 241.1 17.2 280 103-456 9-294 (334)
37 KOG0275 Conserved WD40 repeat- 100.0 1.9E-37 4E-42 251.3 16.5 282 106-456 211-506 (508)
38 KOG0292 Vesicle coat complex C 100.0 5.6E-36 1.2E-40 272.3 27.8 281 104-453 5-316 (1202)
39 KOG0643 Translation initiation 100.0 1.6E-36 3.4E-41 239.3 21.0 281 103-455 5-313 (327)
40 KOG0281 Beta-TrCP (transducin 100.0 8.5E-37 1.9E-41 249.6 19.0 267 77-395 196-482 (499)
41 KOG0295 WD40 repeat-containing 100.0 5.1E-36 1.1E-40 246.4 23.3 268 79-389 109-405 (406)
42 KOG0277 Peroxisomal targeting 100.0 9.9E-36 2.2E-40 233.1 23.2 279 112-456 12-306 (311)
43 KOG0306 WD40-repeat-containing 100.0 3.3E-35 7.2E-40 262.9 29.0 282 102-456 367-661 (888)
44 KOG0285 Pleiotropic regulator 100.0 2.1E-36 4.5E-41 248.1 18.7 243 142-456 143-386 (460)
45 KOG0316 Conserved WD40 repeat- 100.0 8.9E-36 1.9E-40 230.8 20.9 243 142-456 9-254 (307)
46 KOG0268 Sof1-like rRNA process 100.0 5.2E-37 1.1E-41 252.0 14.9 280 101-456 59-342 (433)
47 KOG0265 U5 snRNP-specific prot 100.0 1.6E-35 3.4E-40 237.5 22.2 247 142-456 39-293 (338)
48 KOG0276 Vesicle coat complex C 100.0 7.3E-35 1.6E-39 255.5 27.0 278 77-396 12-304 (794)
49 KOG0645 WD40 repeat protein [G 100.0 5.7E-34 1.2E-38 225.4 28.0 267 77-390 13-311 (312)
50 KOG0288 WD40 repeat protein Ti 100.0 7.8E-36 1.7E-40 249.1 17.9 285 98-456 165-458 (459)
51 KOG0278 Serine/threonine kinas 100.0 8.1E-36 1.7E-40 233.1 16.0 277 75-395 11-302 (334)
52 KOG0318 WD40 repeat stress pro 100.0 5.6E-33 1.2E-37 239.1 34.1 286 101-456 52-347 (603)
53 KOG0306 WD40-repeat-containing 100.0 5.2E-34 1.1E-38 255.3 27.7 337 83-456 81-577 (888)
54 KOG0266 WD40 repeat-containing 100.0 7E-34 1.5E-38 263.3 28.5 251 100-390 195-454 (456)
55 KOG0310 Conserved WD40 repeat- 100.0 1.5E-33 3.3E-38 240.5 27.5 277 107-455 25-305 (487)
56 KOG0274 Cdc4 and related F-box 100.0 1.6E-33 3.5E-38 259.5 28.6 272 106-456 206-479 (537)
57 KOG1407 WD40 repeat protein [F 100.0 2.1E-33 4.5E-38 221.0 24.9 276 102-450 14-293 (313)
58 KOG1446 Histone H3 (Lys4) meth 100.0 2.2E-32 4.8E-37 221.6 31.0 282 101-456 7-300 (311)
59 KOG0277 Peroxisomal targeting 100.0 5.2E-34 1.1E-38 223.5 19.0 243 107-389 59-308 (311)
60 PLN00181 protein SPA1-RELATED; 100.0 1.7E-32 3.6E-37 273.2 34.4 260 129-456 457-735 (793)
61 KOG0305 Anaphase promoting com 100.0 1.2E-32 2.6E-37 244.2 28.6 271 113-456 182-458 (484)
62 KOG0296 Angio-associated migra 100.0 8.2E-33 1.8E-37 227.7 24.3 272 74-390 60-398 (399)
63 KOG0292 Vesicle coat complex C 100.0 1.4E-32 3.1E-37 250.3 28.0 271 78-392 9-323 (1202)
64 KOG0282 mRNA splicing factor [ 100.0 2E-34 4.4E-39 245.5 14.7 250 140-456 204-459 (503)
65 KOG0299 U3 snoRNP-associated p 100.0 1.8E-32 4E-37 232.2 25.2 275 101-447 135-443 (479)
66 KOG0640 mRNA cleavage stimulat 100.0 5.7E-33 1.2E-37 223.9 20.8 307 82-456 85-423 (430)
67 KOG0283 WD40 repeat-containing 100.0 8.1E-33 1.8E-37 251.7 23.3 252 101-456 259-573 (712)
68 KOG0289 mRNA splicing factor [ 100.0 5.9E-32 1.3E-36 227.4 26.6 278 109-455 220-502 (506)
69 cd00200 WD40 WD40 domain, foun 100.0 3.1E-31 6.8E-36 234.7 33.0 246 100-388 43-289 (289)
70 KOG0293 WD40 repeat-containing 100.0 1.1E-32 2.5E-37 230.3 22.0 274 77-391 223-514 (519)
71 KOG0973 Histone transcription 100.0 3.1E-32 6.8E-37 254.3 26.8 281 106-455 11-351 (942)
72 PTZ00421 coronin; Provisional 100.0 4.6E-31 1E-35 243.2 34.0 266 107-413 19-314 (493)
73 KOG0300 WD40 repeat-containing 100.0 3.1E-32 6.8E-37 220.5 21.7 289 98-456 138-473 (481)
74 KOG0772 Uncharacterized conser 100.0 4.6E-32 1E-36 232.9 24.0 290 99-455 158-483 (641)
75 KOG0647 mRNA export protein (c 100.0 8.8E-32 1.9E-36 216.2 23.7 272 106-447 25-311 (347)
76 KOG0313 Microtubule binding pr 100.0 2.3E-31 5E-36 220.2 25.9 277 69-390 106-418 (423)
77 KOG0301 Phospholipase A2-activ 100.0 1.3E-31 2.8E-36 238.0 25.5 277 99-456 5-285 (745)
78 KOG1036 Mitotic spindle checkp 100.0 1E-30 2.2E-35 211.0 26.3 269 107-449 12-294 (323)
79 KOG0305 Anaphase promoting com 100.0 6.3E-31 1.4E-35 233.3 27.5 243 106-392 215-463 (484)
80 KOG0274 Cdc4 and related F-box 100.0 2.4E-31 5.1E-36 245.2 25.7 247 101-398 242-490 (537)
81 KOG0641 WD40 repeat protein [G 100.0 1.2E-29 2.6E-34 195.8 30.4 285 107-456 31-346 (350)
82 PTZ00420 coronin; Provisional 100.0 9E-30 2E-34 235.5 34.0 251 126-414 50-318 (568)
83 KOG2106 Uncharacterized conser 100.0 5.9E-29 1.3E-33 213.3 34.2 368 41-456 45-474 (626)
84 KOG1539 WD repeat protein [Gen 100.0 1.3E-29 2.9E-34 229.8 31.2 300 91-456 183-645 (910)
85 KOG0294 WD40 repeat-containing 100.0 3E-29 6.4E-34 203.0 26.6 262 123-456 4-278 (362)
86 KOG1407 WD40 repeat protein [F 100.0 5.5E-30 1.2E-34 201.8 21.7 242 144-455 14-257 (313)
87 PTZ00421 coronin; Provisional 100.0 2E-29 4.4E-34 232.3 28.7 227 103-371 70-314 (493)
88 KOG1446 Histone H3 (Lys4) meth 100.0 1.2E-28 2.7E-33 199.9 28.8 245 141-456 5-259 (311)
89 KOG0294 WD40 repeat-containing 100.0 3.7E-29 8E-34 202.4 24.4 258 101-408 36-303 (362)
90 KOG0264 Nucleosome remodeling 100.0 5.7E-30 1.2E-34 217.1 20.5 247 105-390 121-404 (422)
91 KOG2096 WD40 repeat protein [G 100.0 7.3E-29 1.6E-33 201.0 25.8 284 101-455 79-398 (420)
92 KOG0289 mRNA splicing factor [ 100.0 2.6E-29 5.7E-34 211.6 24.0 256 93-389 246-505 (506)
93 KOG0643 Translation initiation 100.0 5E-29 1.1E-33 197.1 23.4 234 145-449 5-251 (327)
94 KOG1332 Vesicle coat complex C 100.0 9.3E-30 2E-34 198.6 18.9 252 104-390 7-286 (299)
95 KOG0264 Nucleosome remodeling 100.0 2.1E-29 4.5E-34 213.8 21.9 244 147-456 121-401 (422)
96 KOG0650 WD40 repeat nucleolar 100.0 3.1E-29 6.6E-34 219.4 23.3 288 98-456 390-732 (733)
97 KOG0308 Conserved WD40 repeat- 100.0 6.7E-30 1.5E-34 225.6 18.7 261 106-408 19-303 (735)
98 KOG1408 WD40 repeat protein [F 100.0 4.9E-29 1.1E-33 222.5 24.3 289 102-456 363-710 (1080)
99 KOG0973 Histone transcription 100.0 4.7E-29 1E-33 233.2 25.0 270 98-392 59-357 (942)
100 KOG0308 Conserved WD40 repeat- 100.0 1.3E-29 2.8E-34 223.8 19.5 314 98-456 63-390 (735)
101 KOG1063 RNA polymerase II elon 100.0 2.3E-28 5E-33 217.4 26.2 325 99-456 182-645 (764)
102 KOG0639 Transducin-like enhanc 100.0 5.5E-29 1.2E-33 213.5 21.0 277 105-454 416-699 (705)
103 KOG4283 Transcription-coupled 100.0 4.4E-28 9.5E-33 194.5 24.7 299 79-456 25-362 (397)
104 PTZ00420 coronin; Provisional 100.0 6.6E-28 1.4E-32 223.2 29.7 230 100-372 66-318 (568)
105 KOG0275 Conserved WD40 repeat- 100.0 1.2E-29 2.7E-34 206.0 15.2 242 103-388 258-507 (508)
106 KOG0310 Conserved WD40 repeat- 100.0 1.3E-28 2.9E-33 210.5 21.1 246 101-390 61-309 (487)
107 KOG0288 WD40 repeat protein Ti 100.0 5.9E-29 1.3E-33 208.2 18.4 242 100-387 211-458 (459)
108 KOG2055 WD40 repeat protein [G 100.0 9.8E-28 2.1E-32 203.7 25.1 281 107-456 212-509 (514)
109 KOG0646 WD40 repeat protein [G 100.0 2.6E-28 5.6E-33 207.6 21.2 247 121-410 51-327 (476)
110 KOG0299 U3 snoRNP-associated p 100.0 1.8E-28 3.8E-33 208.2 20.0 255 143-456 135-407 (479)
111 KOG0300 WD40 repeat-containing 100.0 2.4E-28 5.1E-33 198.1 19.4 254 96-392 178-478 (481)
112 KOG1273 WD40 repeat protein [G 100.0 2.9E-27 6.3E-32 191.5 25.5 276 111-456 26-319 (405)
113 KOG1332 Vesicle coat complex C 100.0 1.4E-28 3E-33 192.1 16.9 255 147-456 8-283 (299)
114 KOG0640 mRNA cleavage stimulat 100.0 2.4E-28 5.2E-33 197.3 18.5 256 99-390 163-426 (430)
115 KOG1274 WD40 repeat protein [G 100.0 7.9E-27 1.7E-31 214.2 29.3 255 105-408 10-276 (933)
116 KOG0641 WD40 repeat protein [G 100.0 2.7E-26 5.9E-31 177.4 27.4 244 103-390 84-349 (350)
117 KOG2445 Nuclear pore complex c 100.0 6.2E-27 1.4E-31 189.0 23.7 246 147-456 10-315 (361)
118 KOG0647 mRNA export protein (c 100.0 5.3E-27 1.1E-31 188.9 23.2 240 148-456 25-278 (347)
119 KOG0301 Phospholipase A2-activ 100.0 2E-27 4.4E-32 211.5 22.0 240 141-456 5-246 (745)
120 KOG2445 Nuclear pore complex c 100.0 1.8E-26 3.9E-31 186.4 22.6 250 105-390 10-318 (361)
121 KOG0646 WD40 repeat protein [G 100.0 1.2E-26 2.5E-31 197.6 22.4 261 126-456 13-304 (476)
122 KOG0772 Uncharacterized conser 100.0 3.8E-27 8.3E-32 202.8 19.2 241 141-449 158-429 (641)
123 KOG0269 WD40 repeat-containing 100.0 2.6E-27 5.6E-32 213.4 18.7 278 109-454 40-335 (839)
124 KOG0268 Sof1-like rRNA process 100.0 2.8E-27 6E-32 195.1 16.7 261 89-397 88-352 (433)
125 KOG1539 WD repeat protein [Gen 100.0 2.3E-25 5E-30 202.5 30.3 338 111-456 162-603 (910)
126 KOG0269 WD40 repeat-containing 100.0 1E-27 2.2E-32 216.0 14.7 242 110-392 89-342 (839)
127 KOG4328 WD40 protein [Function 99.9 1.7E-25 3.6E-30 190.1 22.5 286 102-456 180-492 (498)
128 KOG1036 Mitotic spindle checkp 99.9 9.3E-25 2E-29 176.7 25.0 233 149-456 12-259 (323)
129 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7E-24 1.5E-28 189.2 33.5 262 120-456 1-276 (300)
130 KOG0267 Microtubule severing p 99.9 1.7E-27 3.7E-32 213.0 9.8 238 102-382 22-260 (825)
131 KOG2106 Uncharacterized conser 99.9 3.9E-24 8.5E-29 184.0 29.9 280 100-456 192-518 (626)
132 KOG0283 WD40 repeat-containing 99.9 7.6E-26 1.6E-30 206.6 20.4 203 100-347 361-576 (712)
133 KOG0267 Microtubule severing p 99.9 2.8E-27 6.1E-32 211.6 10.6 255 120-450 4-259 (825)
134 KOG2048 WD40 repeat protein [G 99.9 4.4E-24 9.6E-29 190.0 30.4 274 108-455 25-315 (691)
135 KOG0302 Ribosome Assembly prot 99.9 3.2E-25 6.9E-30 183.9 20.9 245 103-388 146-436 (440)
136 KOG1408 WD40 repeat protein [F 99.9 2.7E-25 5.9E-30 198.8 21.2 249 103-391 454-714 (1080)
137 KOG0321 WD40 repeat-containing 99.9 4.7E-25 1E-29 194.8 21.6 276 114-456 55-388 (720)
138 KOG1063 RNA polymerase II elon 99.9 3.8E-24 8.3E-29 190.8 25.1 291 102-456 261-696 (764)
139 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 8.4E-23 1.8E-27 182.3 33.4 261 99-408 22-296 (300)
140 KOG1274 WD40 repeat protein [G 99.9 9.2E-24 2E-28 194.3 27.0 238 148-456 11-259 (933)
141 KOG0270 WD40 repeat-containing 99.9 3.5E-24 7.5E-29 181.5 22.4 277 113-456 130-446 (463)
142 KOG4283 Transcription-coupled 99.9 6.2E-24 1.3E-28 170.8 22.5 207 148-394 41-280 (397)
143 KOG0321 WD40 repeat-containing 99.9 3.2E-24 6.9E-29 189.6 22.1 253 101-392 93-393 (720)
144 KOG2048 WD40 repeat protein [G 99.9 6.4E-23 1.4E-27 182.7 30.2 250 98-391 58-320 (691)
145 KOG0270 WD40 repeat-containing 99.9 1.9E-24 4.1E-29 183.1 19.3 236 120-395 192-454 (463)
146 KOG4227 WD40 repeat protein [G 99.9 2.9E-24 6.4E-29 179.3 19.1 315 67-456 19-384 (609)
147 KOG0639 Transducin-like enhanc 99.9 3.1E-24 6.7E-29 184.5 17.8 237 148-456 417-660 (705)
148 KOG0307 Vesicle coat complex C 99.9 8.1E-25 1.8E-29 206.1 15.3 276 113-455 11-323 (1049)
149 KOG1445 Tumor-specific antigen 99.9 3.1E-24 6.8E-29 189.6 17.2 165 100-270 71-249 (1012)
150 KOG0322 G-protein beta subunit 99.9 1.8E-24 4E-29 171.1 14.1 286 102-456 8-320 (323)
151 KOG1034 Transcriptional repres 99.9 4.9E-23 1.1E-27 168.1 21.5 310 102-456 32-380 (385)
152 KOG2919 Guanine nucleotide-bin 99.9 1.2E-22 2.7E-27 165.4 23.7 257 111-409 52-347 (406)
153 KOG1009 Chromatin assembly com 99.9 1.4E-22 2.9E-27 170.1 22.7 293 108-454 13-367 (434)
154 KOG1538 Uncharacterized conser 99.9 1.3E-22 2.8E-27 180.6 22.0 271 110-454 14-288 (1081)
155 KOG4378 Nuclear protein COP1 [ 99.9 1.1E-22 2.4E-27 174.8 20.1 260 111-413 37-304 (673)
156 KOG0302 Ribosome Assembly prot 99.9 7.4E-23 1.6E-27 170.0 17.2 203 189-456 147-375 (440)
157 KOG4378 Nuclear protein COP1 [ 99.9 5.5E-23 1.2E-27 176.7 16.7 222 110-372 81-305 (673)
158 KOG4328 WD40 protein [Function 99.9 2.4E-22 5.1E-27 171.1 19.1 217 135-390 171-399 (498)
159 COG2319 FOG: WD40 repeat [Gene 99.9 4.3E-20 9.2E-25 173.8 36.2 263 103-408 60-334 (466)
160 KOG2096 WD40 repeat protein [G 99.9 1.4E-21 3.1E-26 159.0 21.9 205 144-390 80-308 (420)
161 KOG1188 WD40 repeat protein [G 99.9 4.7E-22 1E-26 163.3 19.1 268 121-456 41-343 (376)
162 KOG0307 Vesicle coat complex C 99.9 6.2E-23 1.4E-27 193.5 14.7 246 108-393 64-330 (1049)
163 KOG1007 WD repeat protein TSSC 99.9 5.4E-21 1.2E-25 153.6 23.2 260 128-455 38-357 (370)
164 KOG2055 WD40 repeat protein [G 99.9 3.1E-21 6.7E-26 164.5 22.9 271 77-390 212-512 (514)
165 KOG1007 WD repeat protein TSSC 99.9 2.3E-21 5.1E-26 155.6 20.8 250 101-390 56-361 (370)
166 KOG0644 Uncharacterized conser 99.9 4.4E-23 9.5E-28 187.8 12.4 277 100-455 182-464 (1113)
167 KOG0642 Cell-cycle nuclear pro 99.9 2.4E-22 5.1E-27 175.6 15.7 258 102-402 288-573 (577)
168 KOG1034 Transcriptional repres 99.9 3.4E-22 7.3E-27 163.3 14.6 245 106-390 87-383 (385)
169 KOG1273 WD40 repeat protein [G 99.9 2.5E-21 5.4E-26 157.4 18.6 242 153-456 26-277 (405)
170 KOG0290 Conserved WD40 repeat- 99.9 2E-20 4.4E-25 150.4 23.1 258 109-408 45-341 (364)
171 KOG0649 WD40 repeat protein [G 99.9 1.3E-19 2.8E-24 142.2 26.7 248 109-408 11-291 (325)
172 KOG1334 WD40 repeat protein [G 99.9 9.1E-22 2E-26 168.9 13.7 290 100-456 134-463 (559)
173 COG2319 FOG: WD40 repeat [Gene 99.9 1.1E-18 2.3E-23 164.2 36.2 286 99-456 146-439 (466)
174 KOG2919 Guanine nucleotide-bin 99.9 1.3E-20 2.7E-25 153.8 19.5 242 153-456 52-324 (406)
175 KOG1445 Tumor-specific antigen 99.9 2.9E-20 6.3E-25 164.8 23.1 149 240-451 627-786 (1012)
176 KOG1587 Cytoplasmic dynein int 99.9 1.4E-19 3E-24 166.3 28.2 260 130-456 222-513 (555)
177 KOG1009 Chromatin assembly com 99.9 1.8E-20 3.9E-25 157.5 19.5 270 101-395 58-377 (434)
178 KOG1538 Uncharacterized conser 99.9 2.4E-20 5.3E-25 166.3 20.4 243 98-390 43-293 (1081)
179 KOG0650 WD40 repeat nucleolar 99.9 3E-20 6.4E-25 163.6 18.7 242 144-455 394-676 (733)
180 KOG0290 Conserved WD40 repeat- 99.9 1.8E-19 3.9E-24 145.0 21.3 239 105-386 93-361 (364)
181 KOG1517 Guanine nucleotide bin 99.9 2E-19 4.3E-24 168.4 23.9 292 103-456 1059-1378(1387)
182 KOG1188 WD40 repeat protein [G 99.9 4E-20 8.7E-25 152.0 16.1 265 98-390 60-346 (376)
183 KOG1240 Protein kinase contain 99.9 3E-19 6.4E-24 169.7 24.2 263 95-394 1035-1338(1431)
184 KOG0303 Actin-binding protein 99.8 1.2E-19 2.5E-24 152.1 18.3 226 102-370 75-319 (472)
185 KOG1587 Cytoplasmic dynein int 99.8 6.9E-19 1.5E-23 161.7 24.0 246 107-391 241-517 (555)
186 KOG1524 WD40 repeat-containing 99.8 4.5E-19 9.7E-24 154.4 20.4 263 106-455 12-282 (737)
187 KOG1963 WD40 repeat protein [G 99.8 5.2E-18 1.1E-22 156.4 27.8 281 105-456 202-535 (792)
188 KOG0642 Cell-cycle nuclear pro 99.8 4.9E-20 1.1E-24 161.3 13.2 245 144-456 288-558 (577)
189 KOG0303 Actin-binding protein 99.8 1.5E-18 3.2E-23 145.6 21.3 208 145-393 76-297 (472)
190 PRK11028 6-phosphogluconolacto 99.8 1.4E-17 3E-22 150.0 28.8 264 123-456 5-301 (330)
191 KOG1310 WD40 repeat protein [G 99.8 1.7E-19 3.7E-24 157.4 15.6 164 101-269 43-231 (758)
192 KOG0771 Prolactin regulatory e 99.8 6.7E-18 1.5E-22 143.1 22.7 194 197-455 148-350 (398)
193 KOG2110 Uncharacterized conser 99.8 6E-17 1.3E-21 135.0 26.8 230 150-455 5-244 (391)
194 KOG1272 WD40-repeat-containing 99.8 2.4E-19 5.2E-24 153.3 9.3 212 149-408 128-340 (545)
195 KOG1523 Actin-related protein 99.8 2.5E-17 5.5E-22 134.6 20.3 233 107-381 9-269 (361)
196 PRK01742 tolB translocation pr 99.8 9E-18 1.9E-22 155.7 19.9 228 129-408 183-421 (429)
197 KOG0771 Prolactin regulatory e 99.8 6.2E-18 1.3E-22 143.3 16.1 207 112-391 148-355 (398)
198 KOG0649 WD40 repeat protein [G 99.8 6.5E-17 1.4E-21 127.2 20.3 209 152-408 12-252 (325)
199 KOG2110 Uncharacterized conser 99.8 4.7E-16 1E-20 129.7 24.6 236 108-392 5-250 (391)
200 KOG4227 WD40 repeat protein [G 99.8 8.2E-17 1.8E-21 135.1 20.1 243 145-456 51-319 (609)
201 KOG1963 WD40 repeat protein [G 99.8 3.1E-16 6.6E-21 144.9 25.2 280 106-455 14-318 (792)
202 KOG2111 Uncharacterized conser 99.8 1.9E-15 4.1E-20 123.7 26.7 237 110-393 7-259 (346)
203 KOG1334 WD40 repeat protein [G 99.8 1.4E-17 3E-22 143.6 14.7 250 143-456 135-421 (559)
204 KOG1517 Guanine nucleotide bin 99.8 7.8E-17 1.7E-21 151.3 20.0 245 108-393 1109-1384(1387)
205 PRK11028 6-phosphogluconolacto 99.8 3E-15 6.4E-20 134.8 29.7 239 108-390 34-304 (330)
206 KOG1524 WD40 repeat-containing 99.8 5.7E-17 1.2E-21 141.4 17.2 208 121-388 76-284 (737)
207 PRK01742 tolB translocation pr 99.8 1.6E-16 3.4E-21 147.4 21.1 224 98-371 193-426 (429)
208 KOG1523 Actin-related protein 99.7 4E-16 8.7E-21 127.7 20.1 220 148-408 8-255 (361)
209 KOG2321 WD40 repeat protein [G 99.7 6.9E-16 1.5E-20 135.9 22.3 274 106-453 49-337 (703)
210 KOG2111 Uncharacterized conser 99.7 2.9E-15 6.2E-20 122.7 24.2 229 152-455 7-252 (346)
211 KOG0644 Uncharacterized conser 99.7 3.9E-18 8.4E-23 156.0 7.0 235 142-456 182-423 (1113)
212 KOG1240 Protein kinase contain 99.7 9.2E-16 2E-20 146.4 22.4 272 135-456 1034-1331(1431)
213 KOG2139 WD40 repeat protein [G 99.7 1.2E-14 2.6E-19 121.1 24.9 183 108-299 98-298 (445)
214 KOG3881 Uncharacterized conser 99.7 3E-15 6.6E-20 125.9 20.5 249 107-397 54-327 (412)
215 KOG1310 WD40 repeat protein [G 99.7 1.4E-16 3.1E-21 139.3 13.0 216 143-396 43-309 (758)
216 PRK03629 tolB translocation pr 99.7 2.1E-14 4.5E-19 133.0 28.0 228 131-408 180-423 (429)
217 KOG1272 WD40-repeat-containing 99.7 6.3E-17 1.4E-21 138.7 9.4 230 109-388 130-360 (545)
218 KOG2394 WD40 protein DMR-N9 [G 99.7 4.1E-15 8.8E-20 130.1 20.1 233 152-412 125-384 (636)
219 PF02239 Cytochrom_D1: Cytochr 99.7 8E-14 1.7E-18 125.1 28.7 293 100-455 28-343 (369)
220 PRK04922 tolB translocation pr 99.7 2.9E-14 6.2E-19 132.7 24.0 229 130-408 184-428 (433)
221 PRK02889 tolB translocation pr 99.7 2.1E-14 4.5E-19 133.1 22.9 229 130-408 176-420 (427)
222 KOG3881 Uncharacterized conser 99.7 3.1E-14 6.7E-19 119.9 20.7 238 149-455 54-316 (412)
223 KOG0322 G-protein beta subunit 99.7 6E-15 1.3E-19 117.6 15.4 247 100-389 47-322 (323)
224 KOG4497 Uncharacterized conser 99.7 2.1E-13 4.5E-18 112.5 24.1 306 108-452 48-425 (447)
225 KOG2315 Predicted translation 99.6 6.2E-13 1.3E-17 117.4 28.5 275 108-456 34-387 (566)
226 PRK03629 tolB translocation pr 99.6 1.4E-13 3E-18 127.5 25.9 224 98-370 188-427 (429)
227 KOG2139 WD40 repeat protein [G 99.6 5.4E-14 1.2E-18 117.3 20.5 196 150-390 98-309 (445)
228 PRK05137 tolB translocation pr 99.6 3.1E-13 6.8E-18 126.0 27.6 216 130-394 182-416 (435)
229 KOG2394 WD40 protein DMR-N9 [G 99.6 1.2E-14 2.7E-19 127.1 15.7 169 118-291 183-384 (636)
230 PRK02889 tolB translocation pr 99.6 1.3E-13 2.7E-18 127.9 23.0 185 98-293 185-382 (427)
231 KOG1354 Serine/threonine prote 99.6 1.5E-13 3.3E-18 113.9 20.0 302 107-451 24-427 (433)
232 PRK04922 tolB translocation pr 99.6 2.4E-13 5.1E-18 126.6 23.9 224 98-370 193-432 (433)
233 PRK05137 tolB translocation pr 99.6 8.1E-13 1.8E-17 123.2 25.1 185 98-293 191-388 (435)
234 KOG4497 Uncharacterized conser 99.6 2.1E-13 4.5E-18 112.5 18.3 227 155-393 13-243 (447)
235 KOG0280 Uncharacterized conser 99.6 1E-12 2.3E-17 106.7 21.7 259 129-456 45-330 (339)
236 PF08662 eIF2A: Eukaryotic tra 99.6 7.3E-13 1.6E-17 108.0 20.5 154 112-277 9-186 (194)
237 KOG0974 WD-repeat protein WDR6 99.6 2.9E-13 6.4E-18 127.8 20.4 267 108-456 7-285 (967)
238 KOG1409 Uncharacterized conser 99.6 3.4E-13 7.3E-18 111.9 17.9 249 100-391 16-271 (404)
239 PF08662 eIF2A: Eukaryotic tra 99.6 3.8E-13 8.2E-18 109.6 17.9 144 244-456 9-176 (194)
240 KOG2041 WD40 repeat protein [G 99.6 1.2E-12 2.7E-17 118.8 21.6 267 107-410 13-316 (1189)
241 KOG2314 Translation initiation 99.6 2.5E-12 5.5E-17 113.4 22.7 305 112-453 214-561 (698)
242 PRK00178 tolB translocation pr 99.5 1.6E-11 3.6E-16 114.7 27.6 228 131-408 180-423 (430)
243 TIGR02800 propeller_TolB tol-p 99.5 1.3E-11 2.8E-16 115.4 26.4 229 130-408 170-414 (417)
244 TIGR03300 assembly_YfgL outer 99.5 2.3E-11 5E-16 111.8 27.1 258 119-455 104-375 (377)
245 KOG1354 Serine/threonine prote 99.5 2.4E-12 5.1E-17 107.0 17.8 253 149-455 24-355 (433)
246 PRK04792 tolB translocation pr 99.5 1.7E-11 3.7E-16 114.1 26.0 228 131-408 199-442 (448)
247 KOG0309 Conserved WD40 repeat- 99.5 3.5E-13 7.6E-18 122.6 12.6 289 108-456 24-336 (1081)
248 PRK00178 tolB translocation pr 99.5 3E-11 6.4E-16 113.0 25.5 184 98-292 188-384 (430)
249 COG5354 Uncharacterized protei 99.5 1E-10 2.2E-15 102.5 26.1 276 108-456 71-392 (561)
250 PF02239 Cytochrom_D1: Cytochr 99.5 3.3E-11 7.1E-16 108.4 24.1 257 100-399 70-356 (369)
251 KOG4547 WD40 repeat-containing 99.5 1.8E-11 3.9E-16 109.1 20.4 163 209-410 4-192 (541)
252 TIGR02800 propeller_TolB tol-p 99.5 3.9E-11 8.5E-16 112.1 24.2 184 98-292 179-375 (417)
253 KOG4547 WD40 repeat-containing 99.4 3.3E-11 7.1E-16 107.5 21.9 168 118-292 3-195 (541)
254 PRK04792 tolB translocation pr 99.4 6.9E-11 1.5E-15 110.1 24.3 221 101-370 210-446 (448)
255 PF10282 Lactonase: Lactonase, 99.4 3.2E-09 7E-14 95.8 33.2 249 109-398 37-332 (345)
256 KOG0974 WD-repeat protein WDR6 99.4 8.5E-12 1.8E-16 118.1 16.7 197 107-347 86-288 (967)
257 KOG4190 Uncharacterized conser 99.4 2E-12 4.3E-17 114.2 11.2 174 102-280 729-917 (1034)
258 PRK01029 tolB translocation pr 99.4 1.8E-10 3.9E-15 106.4 24.8 232 130-408 165-420 (428)
259 KOG1064 RAVE (regulator of V-A 99.4 3.3E-12 7.1E-17 127.0 12.8 192 102-350 2202-2401(2439)
260 PRK01029 tolB translocation pr 99.4 5.9E-10 1.3E-14 103.0 27.1 231 97-372 173-426 (428)
261 KOG1409 Uncharacterized conser 99.4 3E-11 6.5E-16 100.6 16.1 244 142-456 16-267 (404)
262 PF10282 Lactonase: Lactonase, 99.4 4E-09 8.6E-14 95.2 31.5 266 123-455 2-318 (345)
263 COG5354 Uncharacterized protei 99.4 3.7E-10 8.1E-15 99.0 23.2 249 107-392 31-308 (561)
264 KOG2321 WD40 repeat protein [G 99.4 2.6E-11 5.6E-16 107.6 15.7 174 113-292 138-324 (703)
265 TIGR03300 assembly_YfgL outer 99.4 9E-10 2E-14 101.3 26.7 229 120-398 65-305 (377)
266 TIGR02658 TTQ_MADH_Hv methylam 99.4 6.6E-09 1.4E-13 91.4 30.5 258 130-455 27-326 (352)
267 KOG0280 Uncharacterized conser 99.4 1.6E-10 3.5E-15 94.3 18.4 244 108-391 69-334 (339)
268 PF04762 IKI3: IKI3 family; I 99.3 9.8E-09 2.1E-13 102.8 32.8 301 106-456 73-453 (928)
269 COG4946 Uncharacterized protei 99.3 1.6E-08 3.4E-13 88.4 29.4 122 239-398 358-485 (668)
270 KOG1064 RAVE (regulator of V-A 99.3 8E-12 1.7E-16 124.4 9.7 210 163-456 2181-2395(2439)
271 KOG2315 Predicted translation 99.3 1.8E-09 3.9E-14 96.0 23.2 146 220-410 251-408 (566)
272 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.4E-08 2.9E-13 89.4 27.5 236 116-399 53-339 (352)
273 PRK11138 outer membrane biogen 99.3 7.1E-09 1.5E-13 95.7 26.6 261 120-455 120-390 (394)
274 KOG4532 WD40-like repeat conta 99.3 3.9E-09 8.5E-14 85.2 21.0 224 129-399 51-291 (344)
275 PF08154 NLE: NLE (NUC135) dom 99.3 4.3E-11 9.3E-16 77.0 7.8 62 10-71 1-65 (65)
276 KOG1912 WD40 repeat protein [G 99.2 1.7E-09 3.7E-14 99.7 20.6 106 98-204 45-166 (1062)
277 PF04762 IKI3: IKI3 family; I 99.2 5.1E-08 1.1E-12 97.7 31.6 271 107-391 119-457 (928)
278 KOG3914 WD repeat protein WDR4 99.2 3.4E-10 7.5E-15 96.4 13.9 162 110-278 64-232 (390)
279 PLN02919 haloacid dehalogenase 99.2 2.4E-08 5.1E-13 102.0 29.5 262 112-394 571-892 (1057)
280 KOG2041 WD40 repeat protein [G 99.2 8.7E-10 1.9E-14 100.7 15.1 233 149-451 13-280 (1189)
281 PF15492 Nbas_N: Neuroblastoma 99.2 7.4E-08 1.6E-12 79.2 24.4 247 114-404 3-273 (282)
282 COG5170 CDC55 Serine/threonine 99.2 1.9E-09 4.2E-14 88.8 15.2 241 107-390 25-367 (460)
283 COG2706 3-carboxymuconate cycl 99.2 2.4E-07 5.3E-12 78.6 27.5 256 129-451 15-312 (346)
284 COG4946 Uncharacterized protei 99.2 3.3E-07 7.1E-12 80.4 28.9 140 105-252 356-500 (668)
285 COG5170 CDC55 Serine/threonine 99.1 4.7E-09 1E-13 86.6 16.3 215 149-402 25-322 (460)
286 COG2706 3-carboxymuconate cycl 99.1 1.1E-06 2.3E-11 74.8 30.2 252 104-396 35-329 (346)
287 PF13360 PQQ_2: PQQ-like domai 99.1 1.2E-07 2.7E-12 81.2 25.3 225 129-397 2-237 (238)
288 KOG1912 WD40 repeat protein [G 99.1 1.7E-08 3.6E-13 93.4 19.7 242 150-456 15-301 (1062)
289 KOG4714 Nucleoporin [Nuclear s 99.1 5.3E-09 1.2E-13 84.1 14.3 195 111-347 39-254 (319)
290 PF08450 SGL: SMP-30/Gluconola 99.1 6.9E-07 1.5E-11 76.8 28.7 207 154-408 3-230 (246)
291 PRK04043 tolB translocation pr 99.1 3.6E-07 7.9E-12 84.1 28.3 223 130-405 169-414 (419)
292 PLN02919 haloacid dehalogenase 99.1 1.3E-07 2.8E-12 96.7 27.2 245 154-456 571-885 (1057)
293 KOG0309 Conserved WD40 repeat- 99.1 1.6E-09 3.4E-14 99.5 11.6 251 111-391 70-340 (1081)
294 KOG2314 Translation initiation 99.0 4.4E-08 9.4E-13 87.3 19.4 258 153-449 213-512 (698)
295 KOG4190 Uncharacterized conser 99.0 9.3E-10 2E-14 97.7 8.4 212 143-399 728-957 (1034)
296 PRK04043 tolB translocation pr 99.0 3.4E-07 7.5E-12 84.2 25.2 171 110-293 189-379 (419)
297 KOG4532 WD40-like repeat conta 99.0 6.5E-08 1.4E-12 78.3 17.5 200 170-411 50-259 (344)
298 KOG3914 WD repeat protein WDR4 99.0 8.2E-09 1.8E-13 88.2 12.6 153 209-399 73-232 (390)
299 PF00400 WD40: WD domain, G-be 99.0 1.1E-09 2.5E-14 63.6 5.0 38 99-136 2-39 (39)
300 KOG4714 Nucleoporin [Nuclear s 99.0 3.8E-09 8.3E-14 84.9 8.6 163 103-270 84-255 (319)
301 PF07433 DUF1513: Protein of u 99.0 3.1E-06 6.8E-11 72.0 26.4 217 112-399 8-256 (305)
302 KOG1275 PAB-dependent poly(A) 99.0 2E-08 4.3E-13 94.6 14.4 183 161-388 146-340 (1118)
303 PRK11138 outer membrane biogen 98.9 9.5E-07 2.1E-11 81.6 24.8 231 120-398 69-320 (394)
304 PF13360 PQQ_2: PQQ-like domai 98.9 3E-07 6.5E-12 78.8 19.2 209 171-456 2-227 (238)
305 KOG2066 Vacuolar assembly/sort 98.9 1.1E-07 2.4E-12 88.7 16.5 161 108-284 39-202 (846)
306 KOG2695 WD40 repeat protein [G 98.9 9.8E-09 2.1E-13 85.9 8.0 134 102-238 247-386 (425)
307 PF08450 SGL: SMP-30/Gluconola 98.9 1E-05 2.3E-10 69.5 27.1 216 113-378 4-243 (246)
308 PF00400 WD40: WD domain, G-be 98.8 1.5E-08 3.3E-13 58.7 5.9 38 141-178 2-39 (39)
309 KOG2695 WD40 repeat protein [G 98.8 1.4E-08 3.1E-13 85.0 7.8 152 124-281 228-388 (425)
310 KOG0882 Cyclophilin-related pe 98.8 1.4E-07 3E-12 82.0 12.1 243 101-399 46-314 (558)
311 KOG2066 Vacuolar assembly/sort 98.7 1.2E-06 2.6E-11 82.0 18.3 142 118-270 81-234 (846)
312 PF15492 Nbas_N: Neuroblastoma 98.7 3.3E-05 7.2E-10 64.0 24.6 132 156-294 3-160 (282)
313 KOG1832 HIV-1 Vpr-binding prot 98.7 1.6E-08 3.4E-13 95.1 4.9 166 99-278 1092-1264(1516)
314 KOG1645 RING-finger-containing 98.7 3.1E-06 6.7E-11 72.9 17.0 118 107-231 134-269 (463)
315 cd00216 PQQ_DH Dehydrogenases 98.6 2.8E-05 6E-10 73.8 25.0 246 120-400 61-384 (488)
316 KOG3617 WD40 and TPR repeat-co 98.6 3.2E-06 7E-11 79.7 17.9 109 112-228 19-131 (1416)
317 KOG2114 Vacuolar assembly/sort 98.6 1.4E-05 3.1E-10 75.6 22.1 174 110-292 27-225 (933)
318 KOG1275 PAB-dependent poly(A) 98.6 1.2E-06 2.5E-11 83.1 14.8 179 120-345 147-340 (1118)
319 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00011 2.5E-09 59.9 23.9 143 120-270 23-166 (354)
320 KOG0882 Cyclophilin-related pe 98.6 3.2E-07 7E-12 79.8 10.0 208 149-399 8-240 (558)
321 cd00216 PQQ_DH Dehydrogenases 98.6 7.3E-05 1.6E-09 70.9 26.9 255 121-400 111-434 (488)
322 KOG1832 HIV-1 Vpr-binding prot 98.6 3.9E-08 8.5E-13 92.5 4.6 201 141-399 1092-1300(1516)
323 KOG1920 IkappaB kinase complex 98.6 5.2E-05 1.1E-09 74.8 25.6 239 107-392 67-324 (1265)
324 KOG2114 Vacuolar assembly/sort 98.6 1.4E-05 3E-10 75.7 20.6 209 157-409 30-263 (933)
325 PF00930 DPPIV_N: Dipeptidyl p 98.6 2.5E-05 5.5E-10 70.9 21.7 94 117-217 1-119 (353)
326 KOG1645 RING-finger-containing 98.5 1.2E-05 2.6E-10 69.4 17.4 147 100-250 185-340 (463)
327 KOG1920 IkappaB kinase complex 98.5 2.4E-05 5.2E-10 77.0 21.4 228 149-456 67-319 (1265)
328 PF08596 Lgl_C: Lethal giant l 98.5 3E-05 6.5E-10 70.4 18.8 117 110-227 3-172 (395)
329 PF00780 CNH: CNH domain; Int 98.4 0.00089 1.9E-08 58.7 27.7 231 118-401 5-266 (275)
330 PF11768 DUF3312: Protein of u 98.4 2E-05 4.3E-10 71.9 17.0 76 106-183 257-332 (545)
331 PF07433 DUF1513: Protein of u 98.4 0.00018 3.9E-09 61.5 21.4 177 101-292 49-268 (305)
332 PF11768 DUF3312: Protein of u 98.4 0.00068 1.5E-08 62.2 26.2 61 329-392 271-331 (545)
333 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00038 8.2E-09 57.0 21.7 122 162-291 23-145 (354)
334 KOG3617 WD40 and TPR repeat-co 98.4 1.2E-05 2.6E-10 75.9 14.4 111 152-270 17-132 (1416)
335 KOG3621 WD40 repeat-containing 98.4 0.00013 2.7E-09 68.0 20.5 140 107-251 32-181 (726)
336 KOG1008 Uncharacterized conser 98.4 2.1E-07 4.5E-12 84.7 2.6 200 149-390 55-275 (783)
337 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.3 0.0015 3.2E-08 62.5 28.0 202 120-350 69-336 (527)
338 PRK02888 nitrous-oxide reducta 98.3 0.0004 8.7E-09 65.3 22.5 64 327-391 330-405 (635)
339 PF06977 SdiA-regulated: SdiA- 98.2 0.0023 4.9E-08 54.1 23.2 184 103-293 16-233 (248)
340 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0012 2.7E-08 59.9 23.5 178 108-292 42-291 (353)
341 KOG3621 WD40 repeat-containing 98.2 6.4E-05 1.4E-09 69.9 14.3 117 149-270 32-155 (726)
342 KOG4640 Anaphase-promoting com 98.2 1.5E-05 3.3E-10 72.9 10.0 95 108-203 20-115 (665)
343 PF04053 Coatomer_WDAD: Coatom 98.1 0.0018 3.8E-08 60.0 22.6 143 107-269 31-173 (443)
344 PRK02888 nitrous-oxide reducta 98.1 0.00047 1E-08 64.9 18.0 145 115-272 199-354 (635)
345 COG0823 TolB Periplasmic compo 98.1 0.00077 1.7E-08 62.1 19.3 166 99-273 183-362 (425)
346 PF06433 Me-amine-dh_H: Methyl 98.1 0.0065 1.4E-07 53.0 23.9 241 113-400 40-330 (342)
347 KOG1008 Uncharacterized conser 98.1 1.6E-06 3.4E-11 79.2 1.6 262 108-413 56-354 (783)
348 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0049 1.1E-07 57.0 24.4 64 332-400 193-256 (410)
349 PF03178 CPSF_A: CPSF A subuni 98.0 0.0014 3.1E-08 58.7 20.5 178 173-390 3-202 (321)
350 PF06433 Me-amine-dh_H: Methyl 98.0 0.0071 1.5E-07 52.7 23.6 258 130-456 17-317 (342)
351 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.011 2.4E-07 56.6 27.1 154 121-275 121-339 (527)
352 PF08596 Lgl_C: Lethal giant l 98.0 0.0027 5.9E-08 57.9 21.9 205 152-399 3-252 (395)
353 PF02897 Peptidase_S9_N: Proly 98.0 0.012 2.7E-07 55.0 26.6 244 109-395 124-409 (414)
354 COG3386 Gluconolactonase [Carb 98.0 0.0073 1.6E-07 53.0 23.0 208 156-410 30-262 (307)
355 PF06977 SdiA-regulated: SdiA- 98.0 0.0051 1.1E-07 52.0 21.1 168 189-399 17-209 (248)
356 COG0823 TolB Periplasmic compo 98.0 0.0026 5.7E-08 58.6 21.1 201 132-380 175-389 (425)
357 PF04053 Coatomer_WDAD: Coatom 97.9 0.0038 8.1E-08 57.8 21.1 128 146-292 28-155 (443)
358 PF08553 VID27: VID27 cytoplas 97.9 0.00032 7E-09 68.4 14.7 134 257-449 500-638 (794)
359 PF08553 VID27: VID27 cytoplas 97.9 0.0008 1.7E-08 65.8 17.3 135 162-296 493-633 (794)
360 COG3391 Uncharacterized conser 97.9 0.019 4.1E-07 52.8 27.1 247 110-401 32-294 (381)
361 smart00320 WD40 WD40 repeats. 97.8 3E-05 6.5E-10 44.2 4.2 36 101-136 5-40 (40)
362 PF04841 Vps16_N: Vps16, N-ter 97.8 0.027 5.8E-07 52.2 28.3 49 131-181 62-110 (410)
363 PRK13616 lipoprotein LpqB; Pro 97.8 0.004 8.7E-08 60.0 19.5 149 107-268 348-524 (591)
364 KOG2444 WD40 repeat protein [G 97.8 5.5E-05 1.2E-09 60.7 5.6 101 329-456 70-174 (238)
365 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0043 9.3E-08 44.3 13.6 95 248-386 10-110 (111)
366 smart00320 WD40 WD40 repeats. 97.7 0.00016 3.4E-09 41.0 5.6 38 392-456 2-39 (40)
367 PF14583 Pectate_lyase22: Olig 97.6 0.041 8.8E-07 49.2 26.3 141 115-260 42-208 (386)
368 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.0097 2.1E-07 42.5 14.3 88 196-290 2-89 (111)
369 KOG2079 Vacuolar assembly/sort 97.6 0.00032 6.9E-09 68.6 8.9 80 331-410 101-180 (1206)
370 COG3391 Uncharacterized conser 97.6 0.06 1.3E-06 49.5 28.6 221 132-397 13-246 (381)
371 PF03178 CPSF_A: CPSF A subuni 97.6 0.044 9.6E-07 49.2 22.1 212 131-387 3-262 (321)
372 PHA02713 hypothetical protein; 97.6 0.0095 2.1E-07 57.6 18.8 73 329-403 464-546 (557)
373 PF14583 Pectate_lyase22: Olig 97.5 0.058 1.3E-06 48.2 22.5 218 136-395 16-277 (386)
374 KOG4640 Anaphase-promoting com 97.5 0.00077 1.7E-08 62.2 9.4 93 193-291 20-115 (665)
375 KOG2395 Protein involved in va 97.4 0.0028 6E-08 57.5 11.9 139 253-449 348-491 (644)
376 KOG2444 WD40 repeat protein [G 97.4 0.00026 5.7E-09 56.9 4.9 109 165-281 33-144 (238)
377 KOG2395 Protein involved in va 97.4 0.0021 4.7E-08 58.2 11.0 148 119-269 344-500 (644)
378 PRK13616 lipoprotein LpqB; Pro 97.4 0.041 8.8E-07 53.3 20.1 124 129-265 328-472 (591)
379 KOG4441 Proteins containing BT 97.3 0.05 1.1E-06 52.7 20.1 228 117-394 282-550 (571)
380 KOG2079 Vacuolar assembly/sort 97.3 0.006 1.3E-07 60.2 13.2 101 161-268 98-202 (1206)
381 PF02897 Peptidase_S9_N: Proly 97.3 0.17 3.8E-06 47.3 24.6 112 153-271 126-262 (414)
382 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0016 3.5E-08 38.6 5.5 34 108-142 11-44 (47)
383 KOG4441 Proteins containing BT 97.1 0.084 1.8E-06 51.1 19.1 104 161-272 284-407 (571)
384 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0024 5.3E-08 37.9 5.4 35 360-395 11-45 (47)
385 TIGR03074 PQQ_membr_DH membran 97.1 0.19 4E-06 50.3 21.4 113 120-237 194-353 (764)
386 COG3204 Uncharacterized protei 96.9 0.2 4.4E-06 42.6 18.4 162 104-270 81-264 (316)
387 COG3386 Gluconolactonase [Carb 96.9 0.23 4.9E-06 43.8 18.2 172 111-291 68-264 (307)
388 TIGR03074 PQQ_membr_DH membran 96.9 0.4 8.7E-06 48.1 21.9 116 162-278 194-353 (764)
389 COG3490 Uncharacterized protei 96.9 0.2 4.3E-06 42.4 16.4 62 102-169 113-180 (366)
390 KOG4499 Ca2+-binding protein R 96.8 0.2 4.3E-06 41.0 17.6 46 365-410 216-261 (310)
391 COG3490 Uncharacterized protei 96.8 0.28 6E-06 41.5 19.0 141 113-258 72-243 (366)
392 COG3204 Uncharacterized protei 96.7 0.35 7.5E-06 41.2 18.1 117 148-269 83-210 (316)
393 PF14655 RAB3GAP2_N: Rab3 GTPa 96.6 0.55 1.2E-05 43.2 23.1 48 356-403 303-350 (415)
394 PRK10115 protease 2; Provision 96.6 0.92 2E-05 45.4 32.1 112 109-227 127-254 (686)
395 PHA02713 hypothetical protein; 96.6 0.12 2.6E-06 50.2 15.8 63 119-183 303-378 (557)
396 PF12234 Rav1p_C: RAVE protein 96.4 0.11 2.3E-06 50.1 14.0 114 152-269 31-156 (631)
397 PF00780 CNH: CNH domain; Int 96.4 0.6 1.3E-05 40.8 22.4 122 161-292 6-149 (275)
398 PF15390 DUF4613: Domain of un 96.3 1 2.3E-05 42.4 20.8 149 106-259 54-221 (671)
399 PF14781 BBS2_N: Ciliary BBSom 96.3 0.31 6.8E-06 36.2 12.9 121 155-277 3-133 (136)
400 KOG4499 Ca2+-binding protein R 96.2 0.4 8.6E-06 39.4 14.1 136 109-252 109-265 (310)
401 PF10647 Gmad1: Lipoprotein Lp 96.0 0.91 2E-05 39.1 19.9 140 110-257 25-182 (253)
402 KOG2280 Vacuolar assembly/sort 95.9 1.4 2.9E-05 42.9 18.2 40 360-399 216-255 (829)
403 PRK13684 Ycf48-like protein; P 95.9 0.91 2E-05 41.0 16.9 151 108-268 172-330 (334)
404 KOG1897 Damage-specific DNA bi 95.9 2.3 5E-05 42.7 25.7 223 122-390 686-942 (1096)
405 PF15390 DUF4613: Domain of un 95.8 0.64 1.4E-05 43.7 15.3 149 108-270 19-187 (671)
406 PHA03098 kelch-like protein; P 95.8 0.64 1.4E-05 45.3 16.7 106 118-231 293-417 (534)
407 PHA03098 kelch-like protein; P 95.8 0.71 1.5E-05 44.9 17.0 105 161-272 294-417 (534)
408 COG5167 VID27 Protein involved 95.7 0.44 9.4E-06 43.8 13.4 141 213-390 483-632 (776)
409 COG3292 Predicted periplasmic 95.6 1.9 4E-05 40.6 17.3 150 108-267 164-316 (671)
410 PF05694 SBP56: 56kDa selenium 95.5 1.9 4.1E-05 39.4 21.8 220 119-379 86-392 (461)
411 PF05694 SBP56: 56kDa selenium 95.4 2.1 4.5E-05 39.2 20.3 194 161-392 86-344 (461)
412 PF14870 PSII_BNR: Photosynthe 95.4 1.7 3.7E-05 38.2 24.3 228 110-387 63-301 (302)
413 PF07995 GSDH: Glucose / Sorbo 95.3 2.1 4.7E-05 38.5 21.9 50 110-161 3-59 (331)
414 PRK10115 protease 2; Provision 95.2 3.8 8.3E-05 41.1 29.1 110 151-268 127-254 (686)
415 KOG3630 Nuclear pore complex, 95.2 0.73 1.6E-05 46.8 14.2 143 151-298 101-260 (1405)
416 KOG2280 Vacuolar assembly/sort 95.2 3.4 7.3E-05 40.3 19.4 53 128-182 62-114 (829)
417 PF14870 PSII_BNR: Photosynthe 95.1 2.1 4.6E-05 37.7 25.7 58 329-388 156-213 (302)
418 PHA02790 Kelch-like protein; P 95.1 2.1 4.5E-05 41.0 17.2 141 119-272 271-426 (480)
419 PF05096 Glu_cyclase_2: Glutam 95.1 1.8 4E-05 36.8 20.8 171 111-292 47-241 (264)
420 PF10313 DUF2415: Uncharacteri 95.1 0.15 3.2E-06 29.3 5.5 31 109-139 1-34 (43)
421 COG5167 VID27 Protein involved 94.9 0.51 1.1E-05 43.4 11.4 138 253-449 482-623 (776)
422 PHA02790 Kelch-like protein; P 94.8 3.6 7.9E-05 39.3 17.9 103 161-272 271-387 (480)
423 KOG2247 WD40 repeat-containing 94.8 0.0031 6.7E-08 56.7 -2.4 145 112-264 38-183 (615)
424 PF08728 CRT10: CRT10; InterP 94.8 0.97 2.1E-05 44.3 13.6 117 110-227 102-245 (717)
425 PF10313 DUF2415: Uncharacteri 94.7 0.21 4.5E-06 28.8 5.6 31 361-391 1-34 (43)
426 TIGR03118 PEPCTERM_chp_1 conse 94.7 2.5 5.5E-05 36.5 20.9 232 152-403 24-292 (336)
427 COG1520 FOG: WD40-like repeat 94.7 3.5 7.6E-05 37.9 27.8 112 161-279 68-181 (370)
428 PF14727 PHTB1_N: PTHB1 N-term 94.7 3.6 7.8E-05 38.1 28.0 147 120-268 37-203 (418)
429 TIGR02604 Piru_Ver_Nterm putat 94.6 2.7 5.9E-05 38.6 15.9 143 109-259 14-202 (367)
430 KOG1916 Nuclear protein, conta 94.4 0.04 8.8E-07 53.7 3.7 169 102-274 126-328 (1283)
431 PF10647 Gmad1: Lipoprotein Lp 94.3 3.1 6.7E-05 35.8 20.9 135 152-295 25-179 (253)
432 KOG2377 Uncharacterized conser 94.3 2 4.4E-05 39.1 13.4 152 112-271 26-187 (657)
433 TIGR02604 Piru_Ver_Nterm putat 94.2 3.5 7.6E-05 37.8 15.8 19 361-379 124-142 (367)
434 KOG3630 Nuclear pore complex, 94.0 0.5 1.1E-05 47.9 10.1 140 109-255 101-258 (1405)
435 PF05096 Glu_cyclase_2: Glutam 94.0 3.6 7.7E-05 35.1 20.9 120 151-278 45-166 (264)
436 PF12234 Rav1p_C: RAVE protein 93.8 1.2 2.7E-05 43.1 12.2 112 109-227 30-155 (631)
437 PF14781 BBS2_N: Ciliary BBSom 93.5 2.4 5.3E-05 31.7 14.5 116 114-235 4-132 (136)
438 KOG1916 Nuclear protein, conta 93.4 0.035 7.5E-07 54.1 1.2 69 111-180 186-265 (1283)
439 KOG3616 Selective LIM binding 93.3 2.3 5.1E-05 41.3 12.8 70 107-179 13-82 (1636)
440 PLN00033 photosystem II stabil 93.3 6.8 0.00015 36.2 18.0 145 110-266 240-396 (398)
441 PF10168 Nup88: Nuclear pore c 93.2 10 0.00022 38.1 23.2 78 151-230 85-181 (717)
442 KOG1897 Damage-specific DNA bi 93.0 12 0.00025 38.1 30.8 136 131-269 471-613 (1096)
443 PF07569 Hira: TUP1-like enhan 92.8 1.2 2.5E-05 37.3 9.2 67 209-275 21-101 (219)
444 KOG2377 Uncharacterized conser 92.7 1.5 3.2E-05 40.0 10.1 95 107-203 65-163 (657)
445 KOG1983 Tomosyn and related SN 92.6 5.9 0.00013 41.5 15.7 32 108-139 35-66 (993)
446 PF14761 HPS3_N: Hermansky-Pud 92.4 3.1 6.7E-05 34.1 10.8 56 121-177 29-92 (215)
447 PF08728 CRT10: CRT10; InterP 92.3 8.5 0.00018 38.1 15.4 145 120-268 49-245 (717)
448 PF14655 RAB3GAP2_N: Rab3 GTPa 92.1 2.8 6.2E-05 38.7 11.5 88 147-237 304-407 (415)
449 COG1520 FOG: WD40-like repeat 92.0 9.8 0.00021 35.0 27.1 152 118-277 67-225 (370)
450 KOG2247 WD40 repeat-containing 92.0 0.024 5.1E-07 51.4 -1.8 125 245-408 39-165 (615)
451 PRK13684 Ycf48-like protein; P 91.9 9.4 0.0002 34.5 23.9 150 193-388 172-329 (334)
452 PF07569 Hira: TUP1-like enhan 91.9 1.8 3.8E-05 36.3 9.3 67 329-396 22-101 (219)
453 PF11635 Med16: Mediator compl 91.6 18 0.00038 37.0 17.8 83 361-454 260-345 (753)
454 PF11715 Nup160: Nucleoporin N 91.2 1.5 3.2E-05 42.9 9.5 73 329-401 158-259 (547)
455 KOG4460 Nuclear pore complex, 91.2 2.8 6E-05 39.0 10.2 88 362-456 105-195 (741)
456 PF12657 TFIIIC_delta: Transcr 91.1 3.3 7.1E-05 33.2 9.8 35 194-228 86-121 (173)
457 PF10168 Nup88: Nuclear pore c 90.2 22 0.00049 35.8 21.0 72 194-271 85-181 (717)
458 PF14727 PHTB1_N: PTHB1 N-term 89.8 17 0.00036 33.9 26.0 112 161-273 36-167 (418)
459 PF12768 Rax2: Cortical protei 89.7 8.9 0.00019 33.4 11.8 100 130-233 16-128 (281)
460 KOG1900 Nuclear pore complex, 89.6 16 0.00034 38.5 14.8 108 154-263 82-201 (1311)
461 COG5276 Uncharacterized conser 89.4 13 0.00029 32.1 25.5 151 109-272 87-244 (370)
462 KOG1900 Nuclear pore complex, 89.1 6.8 0.00015 41.0 12.0 154 107-270 77-273 (1311)
463 COG4257 Vgb Streptogramin lyas 88.9 14 0.0003 31.6 19.8 230 110-392 63-307 (353)
464 PF08801 Nucleoporin_N: Nup133 88.4 13 0.00028 35.0 13.1 25 432-456 192-216 (422)
465 TIGR03118 PEPCTERM_chp_1 conse 88.4 16 0.00036 31.8 21.8 207 110-350 24-282 (336)
466 PF07995 GSDH: Glucose / Sorbo 88.4 14 0.0003 33.4 12.6 102 152-256 3-129 (331)
467 KOG4460 Nuclear pore complex, 88.1 3.4 7.3E-05 38.5 8.3 76 195-275 105-204 (741)
468 COG4590 ABC-type uncharacteriz 88.0 2.8 6E-05 38.3 7.6 164 101-273 213-390 (733)
469 TIGR02276 beta_rpt_yvtn 40-res 88.0 3.3 7.2E-05 23.5 5.8 31 118-148 1-32 (42)
470 KOG1898 Splicing factor 3b, su 88.0 36 0.00077 35.2 23.1 103 337-450 910-1016(1205)
471 PF12657 TFIIIC_delta: Transcr 87.5 6.6 0.00014 31.5 9.1 30 241-270 86-122 (173)
472 PF07676 PD40: WD40-like Beta 87.4 3 6.4E-05 23.4 5.2 30 106-135 6-38 (39)
473 PF07676 PD40: WD40-like Beta 85.7 4.1 9E-05 22.8 5.2 32 146-177 4-38 (39)
474 TIGR03547 muta_rot_YjhT mutatr 85.5 28 0.00061 31.6 20.4 15 437-451 318-332 (346)
475 TIGR02276 beta_rpt_yvtn 40-res 85.2 5 0.00011 22.7 5.6 31 370-400 1-32 (42)
476 COG3823 Glutamine cyclotransfe 84.8 20 0.00044 29.3 13.3 70 209-278 55-128 (262)
477 smart00564 PQQ beta-propeller 84.7 3 6.5E-05 22.2 4.1 27 251-277 6-32 (33)
478 smart00564 PQQ beta-propeller 84.5 2.6 5.7E-05 22.4 3.9 25 374-398 8-32 (33)
479 PF11715 Nup160: Nucleoporin N 84.5 7.3 0.00016 38.1 9.5 72 209-280 157-259 (547)
480 smart00036 CNH Domain found in 84.4 29 0.00063 30.8 28.7 60 119-180 12-73 (302)
481 PF12768 Rax2: Cortical protei 84.3 28 0.0006 30.5 12.7 113 172-291 16-146 (281)
482 KOG2063 Vacuolar assembly/sort 84.0 55 0.0012 33.7 18.2 69 115-184 21-100 (877)
483 PF10395 Utp8: Utp8 family; I 82.9 52 0.0011 32.6 15.2 153 108-268 129-304 (670)
484 PF02333 Phytase: Phytase; In 82.9 38 0.00082 31.0 20.4 166 119-290 67-265 (381)
485 TIGR03548 mutarot_permut cycli 82.6 36 0.00079 30.6 14.8 105 119-231 72-197 (323)
486 KOG4659 Uncharacterized conser 82.5 74 0.0016 34.1 21.1 86 364-452 596-684 (1899)
487 COG5276 Uncharacterized conser 82.2 33 0.00072 29.8 23.6 134 149-293 85-225 (370)
488 PF05935 Arylsulfotrans: Aryls 82.0 49 0.0011 31.7 14.8 156 118-283 113-315 (477)
489 PF10214 Rrn6: RNA polymerase 81.8 67 0.0014 33.1 18.8 115 109-229 146-277 (765)
490 KOG1896 mRNA cleavage and poly 81.6 31 0.00067 36.2 12.2 136 121-266 1047-1210(1366)
491 PF10433 MMS1_N: Mono-function 81.4 54 0.0012 31.7 23.6 111 117-227 219-341 (504)
492 PLN02153 epithiospecifier prot 81.1 43 0.00093 30.4 20.7 23 209-231 85-112 (341)
493 PF07250 Glyoxal_oxid_N: Glyox 80.9 34 0.00074 29.1 12.6 146 134-285 50-213 (243)
494 PF01011 PQQ: PQQ enzyme repea 80.5 5.3 0.00011 22.3 4.2 27 374-400 2-28 (38)
495 PF01011 PQQ: PQQ enzyme repea 80.3 5.5 0.00012 22.2 4.2 27 253-279 2-28 (38)
496 PF08801 Nucleoporin_N: Nup133 79.8 55 0.0012 30.8 15.6 21 329-349 201-221 (422)
497 PF01436 NHL: NHL repeat; Int 79.5 6.1 0.00013 20.3 3.9 25 363-387 4-28 (28)
498 KOG3616 Selective LIM binding 79.4 54 0.0012 32.6 12.5 109 150-268 14-125 (1636)
499 PRK14131 N-acetylneuraminic ac 78.5 56 0.0012 30.2 19.2 23 209-231 84-117 (376)
500 COG3823 Glutamine cyclotransfe 78.1 37 0.0008 27.9 13.6 149 119-277 55-212 (262)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.1e-83 Score=524.48 Aligned_cols=429 Identities=62% Similarity=1.094 Sum_probs=414.9
Q ss_pred CCccccCc-ceEEEEEEC---CCCCCCCCcEEeeCCCCHHHHHHHHHHhhcC-CCCCceeEEecCeeeeechhhhHhhcC
Q 012799 1 MEIETETT-NNVMCLLTD---PEGNPLGAPMYFPQNAGPQQLSQIVNKLLNN-EEKLPYAFYISDHELLVPLGSYLEKHK 75 (456)
Q Consensus 1 ~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (456)
||.+.+++ .+|++.|+. ..+.....++.+|....+.+|..++|+|+.+ ++++||.|+..+.++..+|++.+.+..
T Consensus 3 ~~~~~~~~~~~i~~~l~~~~~d~g~~~g~~~~vp~~is~~qL~~l~n~ll~~s~dp~pysf~v~~~ei~~~l~~tL~~~~ 82 (480)
T KOG0271|consen 3 MESIDPAELVTIPLLLVSVATDTGENEGSALLVPGDISTLQLELLCNQLLGNSDDPVPYSFFVTEIEILDSLETTLEKQN 82 (480)
T ss_pred cccccccccccchhhcccccCCcccccCCceeccccCCHHHHHHHHHHHhhcccCCcceEEEecchHHHHHHHHHHhhcc
Confidence 56666644 888888876 5678888999999999999999999999988 899999999999999999999999999
Q ss_pred cCcccEEEEEEeccceEEEeecccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEE
Q 012799 76 VSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC 155 (456)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~ 155 (456)
+++|..+.+.|+|+++++++|..+|...+.||.++|.|++|+|+|..||+|+.|.++++||+.+..+.+++++|...|.|
T Consensus 83 v~te~~l~lvyqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlc 162 (480)
T KOG0271|consen 83 VSTEDVLTLVYQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLC 162 (480)
T ss_pred cchhheeeEEeccchhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 012799 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC 235 (456)
Q Consensus 156 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 235 (456)
++|+|||+.||+|+.||+|++||.++|++....+.+|...|++++|.|.+..+.+++|++++.||.|+|||+..++++..
T Consensus 163 vawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ 242 (480)
T KOG0271|consen 163 VAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT 242 (480)
T ss_pred EEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHH
Q 012799 236 LSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK 315 (456)
Q Consensus 236 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (456)
+.+|..+|+|+.|..+|++++|+.|++|++|+...|++.+++++|...|+.++.+.++.+..+.+++.+.......+.+.
T Consensus 243 lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 243 LSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred eccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred HHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEE
Q 012799 316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395 (456)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~ 395 (456)
....++.......++.+++|++|+++.+|+.....+++..+.+|...|+.+.||||++++|+++-|..|++||.++|+.+
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l 402 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFL 402 (480)
T ss_pred HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchh
Confidence 99999999999999999999999999999988888899999999999999999999999999999999999999999999
Q ss_pred EEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 396 AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 396 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.+|++|.++|+.+ +|+.|.++|++||.|.+++||
T Consensus 403 asfRGHv~~VYqv---------------------------awsaDsRLlVS~SkDsTLKvw 436 (480)
T KOG0271|consen 403 ASFRGHVAAVYQV---------------------------AWSADSRLLVSGSKDSTLKVW 436 (480)
T ss_pred hhhhhccceeEEE---------------------------EeccCccEEEEcCCCceEEEE
Confidence 9999999999999 999999999999999999999
No 2
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=7.7e-55 Score=358.55 Aligned_cols=369 Identities=30% Similarity=0.488 Sum_probs=320.7
Q ss_pred cceEEEEEECC--CCCCCCCcEEeeCCCCHHHHHHHHHHhhcCC----CCCceeEEecCeeeeechhhhHhhcCcCcccE
Q 012799 8 TNNVMCLLTDP--EGNPLGAPMYFPQNAGPQQLSQIVNKLLNNE----EKLPYAFYISDHELLVPLGSYLEKHKVSVEKV 81 (456)
Q Consensus 8 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (456)
..||++.|+|+ .+++|+.|+++|++.++.+|++++|+|+..+ .+.||+|++.++.++.+|.+++.++++++|.+
T Consensus 5 ~~qvqvrF~Tk~e~~aVpD~p~~iP~~~~r~gLs~ivN~ll~se~~~~K~~pFDFLi~gelLRtsL~e~l~~kgiSsE~~ 84 (423)
T KOG0313|consen 5 SGQVQVRFFTKNEDYAVPDVPFAIPTSVERYGLSNIVNKLLKSENGFWKPVPFDFLIKGELLRTSLDEHLEEKGISSEEI 84 (423)
T ss_pred cceEEEEEEecccccCCCCcceeccCcceEccHHHHHHHHHhccCCcCCCCcceEEEcceeeeccHHHHHHHcCcChhhe
Confidence 48999999987 5899999999999999999999999999988 78999999999999999999999999999999
Q ss_pred EEEEEeccceEEEeecccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCC
Q 012799 82 LSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD 161 (456)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (456)
+.|+|... + ++.+..+. --|.+.|.++... ++++++|++||.+++||.. |+....+.+|.++|.+++|.-.
T Consensus 85 leIEYv~~----~-~aP~pl~~-~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~ 155 (423)
T KOG0313|consen 85 LEIEYVEA----I-TAPKPLQC-FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIK 155 (423)
T ss_pred eEEEEEEe----c-CCCCcccc-ccchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEec
Confidence 99999632 1 11112222 2499999999988 7899999999999999965 8889999999999998888643
Q ss_pred ---CCEEEEEeCCCeEEEEeCCCCCCccc---cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC-------
Q 012799 162 ---GKHLVSGSKAGELQCWDPQTGKPSGN---PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS------- 228 (456)
Q Consensus 162 ---~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~------- 228 (456)
...+++++.|.++++|.++.+..... .-.+|...|.++...+ ++..+++|+.|.+|.+|+..
T Consensus 156 n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~-----sgtr~~SgS~D~~lkiWs~~~~~~~~~ 230 (423)
T KOG0313|consen 156 NSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS-----SGTRFCSGSWDTMLKIWSVETDEEDEL 230 (423)
T ss_pred CCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecC-----CCCeEEeecccceeeecccCCCccccc
Confidence 33699999999999999988764321 2348999999999888 99999999999999999932
Q ss_pred ------------------CCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEec
Q 012799 229 ------------------LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS 290 (456)
Q Consensus 229 ------------------~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~ 290 (456)
++.++..+.+|..+|.++.|++.+.+++++.|.+|+.||+.++....++. .+..++++..+
T Consensus 231 E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~ 309 (423)
T KOG0313|consen 231 ESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYS 309 (423)
T ss_pred cccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeee-cCcceeEeecc
Confidence 23456778899999999999997799999999999999999999888887 45668999998
Q ss_pred CcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC--CCccccccccccEeEEEE
Q 012799 291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK--QPKTRMTGHQQLVNHVYF 368 (456)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~ 368 (456)
|. ..+|++|+.|..+++||++++. .....+.+|.+.|.++.|
T Consensus 310 ~~------------------------------------~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkw 353 (423)
T KOG0313|consen 310 PL------------------------------------SKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKW 353 (423)
T ss_pred cc------------------------------------cceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheec
Confidence 87 4569999999999999998765 345677899999999999
Q ss_pred CCCCC-EEEEEECCCcEEEEeCCCCe-EEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEE
Q 012799 369 SPDGQ-WVASASFDKSIKLWNGTTGK-FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS 446 (456)
Q Consensus 369 sp~~~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s 446 (456)
+|... .|++|+.||++++||+++.+ ++..+.+|.+.|.++ .|+ ++..+++
T Consensus 354 sp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~v---------------------------dW~-~~~~IvS 405 (423)
T KOG0313|consen 354 SPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSV---------------------------DWN-EGGLIVS 405 (423)
T ss_pred CCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEE---------------------------ecc-CCceEEe
Confidence 99655 59999999999999999977 899999999999999 776 4679999
Q ss_pred eeCCCceEE
Q 012799 447 GSKDSTLKV 455 (456)
Q Consensus 447 ~s~Dg~v~i 455 (456)
||.|.+|+|
T Consensus 406 GGaD~~l~i 414 (423)
T KOG0313|consen 406 GGADNKLRI 414 (423)
T ss_pred ccCcceEEE
Confidence 999999997
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-53 Score=350.56 Aligned_cols=312 Identities=32% Similarity=0.532 Sum_probs=282.2
Q ss_pred cCcCcccEEEEEEeccc----------eEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc
Q 012799 74 HKVSVEKVLSIVYQPQA----------VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT 141 (456)
Q Consensus 74 ~~~~~~~~~~~~~~~~~----------~~~~~~~--~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~ 141 (456)
...+.++++.+.|.|+. .+++|+. ....++.++|...|.|++|+|||+.||+|+.||+|++||..+++
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~ 190 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ 190 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence 45588999999999943 5677754 34678899999999999999999999999999999999999887
Q ss_pred ce-eEEecCCCCEEEEEEcC-----CCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEE
Q 012799 142 PM-FKCTGHKNWVLCIAWSA-----DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215 (456)
Q Consensus 142 ~~-~~~~~~~~~v~~~~~~~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~ 215 (456)
++ ..+.+|...|++++|.| ..++||+++.||.|+|||+..+..+. .+.+|...|+|++|-- ..++++
T Consensus 191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~-~lsgHT~~VTCvrwGG------~gliyS 263 (480)
T KOG0271|consen 191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVR-TLSGHTASVTCVRWGG------EGLIYS 263 (480)
T ss_pred cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEE-EeccCccceEEEEEcC------CceEEe
Confidence 65 56899999999999986 57799999999999999999888776 7899999999999963 468999
Q ss_pred EeCCCcEEEEECCCCeEEEEecCcCccEEEEEeC-----------CCC--------------------------eEEEEe
Q 012799 216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-----------GDG--------------------------VIYTGS 258 (456)
Q Consensus 216 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-----------~~~--------------------------~l~~~~ 258 (456)
|+.|++|++|+...+.+...+++|...|+.++.+ |.+ .+++|+
T Consensus 264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence 9999999999999999999999999999999886 111 499999
Q ss_pred CCCcEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC
Q 012799 259 QDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (456)
Q Consensus 259 ~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (456)
.|.++.+|+.... +++..+.+|..-|+.+.|+|+ +.++++++.
T Consensus 344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd------------------------------------~r~IASaSF 387 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPD------------------------------------GRYIASASF 387 (480)
T ss_pred CCceEEEecccccccchhhhhchhhheeeEEECCC------------------------------------ccEEEEeec
Confidence 9999999997654 578888999999999999999 667999999
Q ss_pred CCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeec
Q 012799 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR 417 (456)
Q Consensus 338 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 417 (456)
|..|++||.++++ .+..+.+|-..|..++|+.|.++|++|+.|.++++||+++.++...+.+|.+.|.++
T Consensus 388 DkSVkLW~g~tGk-~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~v--------- 457 (480)
T KOG0271|consen 388 DKSVKLWDGRTGK-FLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAV--------- 457 (480)
T ss_pred ccceeeeeCCCcc-hhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEE---------
Confidence 9999999977654 667789999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.|+|||..+++|+.|..+++|
T Consensus 458 ------------------DwspDG~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 458 ------------------DWSPDGQRVASGGKDKVLRLW 478 (480)
T ss_pred ------------------EecCCCceeecCCCceEEEee
Confidence 999999999999999999999
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.5e-52 Score=348.31 Aligned_cols=281 Identities=27% Similarity=0.477 Sum_probs=268.5
Q ss_pred CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCC
Q 012799 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAGELQCWDPQTGK 183 (456)
Q Consensus 106 ~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~ 183 (456)
|-+.+|..+.|++|++.||||+.+|.++||+..+...+.++.+|...|.++.|+|. +..+|+|+.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 67889999999999999999999999999999999999999999999999999996 6799999999999999999877
Q ss_pred CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCc
Q 012799 184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCT 262 (456)
Q Consensus 184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~ 262 (456)
++. .+.+|...|..++|+| +|++|++++.|.+-++||++++..+....+|...|.+++|.++| .+++|+.|..
T Consensus 253 ~l~-~l~gH~~RVs~VafHP-----sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~ 326 (459)
T KOG0272|consen 253 PLQ-DLEGHLARVSRVAFHP-----SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSL 326 (459)
T ss_pred chh-hhhcchhhheeeeecC-----CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccch
Confidence 766 6889999999999999 99999999999999999999999999999999999999999999 8899999999
Q ss_pred EEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEE
Q 012799 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF 342 (456)
Q Consensus 263 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 342 (456)
-+|||+++|+++..+.+|..+|.+++|+|+ |..+++|+.|++++
T Consensus 327 ~RvWDlRtgr~im~L~gH~k~I~~V~fsPN------------------------------------Gy~lATgs~Dnt~k 370 (459)
T KOG0272|consen 327 GRVWDLRTGRCIMFLAGHIKEILSVAFSPN------------------------------------GYHLATGSSDNTCK 370 (459)
T ss_pred hheeecccCcEEEEecccccceeeEeECCC------------------------------------ceEEeecCCCCcEE
Confidence 999999999999999999999999999998 66799999999999
Q ss_pred EEecCCCCCCccccccccccEeEEEECC-CCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCC
Q 012799 343 LWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSN 421 (456)
Q Consensus 343 iwd~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~ 421 (456)
|||++.... ...+.+|.+.|+.+.|+| .|.+|+|++.|++++||...+..+++++.||.+.|.++
T Consensus 371 VWDLR~r~~-ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~------------- 436 (459)
T KOG0272|consen 371 VWDLRMRSE-LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISL------------- 436 (459)
T ss_pred Eeeeccccc-ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEE-------------
Confidence 999887665 677899999999999999 78899999999999999999999999999999999999
Q ss_pred ceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 422 FYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 422 ~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
..++|+++++|++.|.++++|
T Consensus 437 --------------Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 437 --------------DISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred --------------EeccCCceEEEeccCceeeec
Confidence 889999999999999999999
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.1e-48 Score=311.48 Aligned_cols=286 Identities=23% Similarity=0.398 Sum_probs=263.9
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 012799 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (456)
Q Consensus 102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 181 (456)
++|+||.+.|.++.|++|.+++++++.||.+.|||.-+....+.++-....|...+|+|.|+++|.|+.|+...||++.+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 68999999999999999999999999999999999999888888888899999999999999999999999999999985
Q ss_pred C--C---CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC-CC-eE
Q 012799 182 G--K---PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DG-VI 254 (456)
Q Consensus 182 ~--~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l 254 (456)
. + .+.+.+.+|.+.+.++.|.+ ...|++++.|.++.+||+++++.+..+.+|.+.|.++++.| ++ .+
T Consensus 129 ~d~~g~~~v~r~l~gHtgylScC~f~d------D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHTGYLSCCRFLD------DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred ccccccceeeeeecCccceeEEEEEcC------CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeE
Confidence 4 2 34456899999999999975 45899999999999999999999999999999999999999 66 99
Q ss_pred EEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799 255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (456)
Q Consensus 255 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (456)
++|+-|+..++||++.+..+++|.+|...|+++.|.|+ +.-+++
T Consensus 203 vSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~------------------------------------G~afat 246 (343)
T KOG0286|consen 203 VSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPS------------------------------------GDAFAT 246 (343)
T ss_pred EecccccceeeeeccCcceeEeecccccccceEEEccC------------------------------------CCeeee
Confidence 99999999999999999999999999999999999998 666999
Q ss_pred EeCCCcEEEEecCCCCCCcc-ccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeee
Q 012799 335 GSDDFTMFLWEPAVSKQPKT-RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELI 413 (456)
Q Consensus 335 ~~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 413 (456)
|++|++.++||++...+... ....-..+|++++||..|++|++|..|.++.+||.-.++.+..+.+|.+.|.++
T Consensus 247 GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl----- 321 (343)
T KOG0286|consen 247 GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCL----- 321 (343)
T ss_pred cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEE-----
Confidence 99999999999988664432 122334579999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 414 YCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
..+|||..|+|||.|.++|||
T Consensus 322 ----------------------~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 322 ----------------------GVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred ----------------------EECCCCcEEEecchhHheeec
Confidence 889999999999999999999
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.6e-46 Score=309.96 Aligned_cols=270 Identities=29% Similarity=0.487 Sum_probs=246.1
Q ss_pred CcccEEEEEEeccc----------eEEEeecc--cccccccCCcccEEEEEECCC--CCeEEEEECCCcEEEEeCCCCcc
Q 012799 77 SVEKVLSIVYQPQA----------VFRIRPVN--RCSATIAGHTEAVLSVAFSPD--GRQLASGSGDTTVRLWDLNTQTP 142 (456)
Q Consensus 77 ~~~~~~~~~~~~~~----------~~~~~~~~--~~~~~l~~h~~~V~~~~~s~~--~~~l~~~~~d~~v~vwd~~~~~~ 142 (456)
...++....|+++. ..++|... +..++|.||.+.|.++.|+|. +..+|+|+.||++++|++++..+
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~ 253 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP 253 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc
Confidence 34455555665543 34455443 457889999999999999996 56899999999999999999999
Q ss_pred eeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcE
Q 012799 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222 (456)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i 222 (456)
+..+.+|...|..++|+|+|++|+|++.|.+-++||++++.... ...+|...|.+++|.| +|..+++||.|..-
T Consensus 254 l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL-~QEGHs~~v~~iaf~~-----DGSL~~tGGlD~~~ 327 (459)
T KOG0272|consen 254 LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL-LQEGHSKGVFSIAFQP-----DGSLAATGGLDSLG 327 (459)
T ss_pred hhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhH-hhcccccccceeEecC-----CCceeeccCccchh
Confidence 99999999999999999999999999999999999999998775 6889999999999999 99999999999999
Q ss_pred EEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeecccc
Q 012799 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301 (456)
Q Consensus 223 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 301 (456)
+|||+++++++..+.+|..+|.+++|+|+| .+++|+.|++++|||++..+.+.++.+|..-|+.+.++|.
T Consensus 328 RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~--------- 398 (459)
T KOG0272|consen 328 RVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQ--------- 398 (459)
T ss_pred heeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEeccc---------
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999985
Q ss_pred CCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECC
Q 012799 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381 (456)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d 381 (456)
.+.+|++++.|+++++|.. ....+...+.||++.|.++.++||+.++++++.|
T Consensus 399 --------------------------~g~fL~TasyD~t~kiWs~-~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~D 451 (459)
T KOG0272|consen 399 --------------------------EGYFLVTASYDNTVKIWST-RTWSPLKSLAGHEGKVISLDISPDSQAIATSSFD 451 (459)
T ss_pred --------------------------CCeEEEEcccCcceeeecC-CCcccchhhcCCccceEEEEeccCCceEEEeccC
Confidence 2778999999999999994 4556788899999999999999999999999999
Q ss_pred CcEEEEe
Q 012799 382 KSIKLWN 388 (456)
Q Consensus 382 g~i~iwd 388 (456)
.++++|.
T Consensus 452 RT~KLW~ 458 (459)
T KOG0272|consen 452 RTIKLWR 458 (459)
T ss_pred ceeeecc
Confidence 9999995
No 7
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.2e-45 Score=299.04 Aligned_cols=307 Identities=27% Similarity=0.412 Sum_probs=278.1
Q ss_pred ecccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 012799 96 PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ 175 (456)
Q Consensus 96 ~~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 175 (456)
|.....+.+.||..+|+.+-|+|+-..+++++.|++|++||..+++....+++|.+.+..++|+..|+++++++.|-.++
T Consensus 96 pRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 96 PRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAK 175 (406)
T ss_pred CCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchh
Confidence 44567788899999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred EEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eE
Q 012799 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI 254 (456)
Q Consensus 176 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l 254 (456)
+||..+.....+.+.+|...|.++.|.| .|.++++++.|.+|+.|++.++-++.++.+|...|..++.+.|| .+
T Consensus 176 LWd~~~~~~c~ks~~gh~h~vS~V~f~P-----~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~ 250 (406)
T KOG0295|consen 176 LWDFDTFFRCIKSLIGHEHGVSSVFFLP-----LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTII 250 (406)
T ss_pred heeHHHHHHHHHHhcCcccceeeEEEEe-----cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEE
Confidence 9999875444457889999999999999 78999999999999999999999999999999999999999999 88
Q ss_pred EEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799 255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (456)
Q Consensus 255 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (456)
++++.|.++++|-+.++++...++.|..+|.+++|.|...+........ ....+.++.+
T Consensus 251 As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~---------------------~~~~~~~l~s 309 (406)
T KOG0295|consen 251 ASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATG---------------------STNGGQVLGS 309 (406)
T ss_pred EecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccC---------------------CCCCccEEEe
Confidence 9999999999999999999999999999999999999754322111110 1113578999
Q ss_pred EeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeee
Q 012799 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIY 414 (456)
Q Consensus 335 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 414 (456)
++.|++|++||+.++ ..+..+.+|.+.|..++|+|.|+||+++.+|+++++||++++++...+..|...++++
T Consensus 310 ~SrDktIk~wdv~tg-~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~l------ 382 (406)
T KOG0295|consen 310 GSRDKTIKIWDVSTG-MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSL------ 382 (406)
T ss_pred ecccceEEEEeccCC-eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEE------
Confidence 999999999998776 4566788999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.|..+..+++||+-|.++++|
T Consensus 383 ---------------------Dfh~~~p~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 383 ---------------------DFHKTAPYVVTGSVDQTVKVW 403 (406)
T ss_pred ---------------------ecCCCCceEEeccccceeeee
Confidence 889888999999999999998
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1e-43 Score=281.56 Aligned_cols=286 Identities=28% Similarity=0.485 Sum_probs=246.8
Q ss_pred cccccCCcccEEEEEECCC-CCeEEEEECCCcEEEEeCCC-----CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 012799 101 SATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNT-----QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL 174 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~-~~~l~~~~~d~~v~vwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 174 (456)
..+|++|++.|+.++..+. .+.+++++.|.++.+|++.. |.+.+.+.||+..|..+..++||++.++++.|+++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence 4578999999999999986 56889999999999998754 56788999999999999999999999999999999
Q ss_pred EEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCc-CccEEEEEeCCC--
Q 012799 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH-TLAVTCVKWGGD-- 251 (456)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~-- 251 (456)
++||+.+++... .+.+|...|.+++|++ +.+.+++|+.|.+|++|++-........... ...|+|+.|+|+
T Consensus 88 rlWDl~~g~~t~-~f~GH~~dVlsva~s~-----dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 88 RLWDLATGESTR-RFVGHTKDVLSVAFST-----DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNES 161 (315)
T ss_pred EEEEecCCcEEE-EEEecCCceEEEEecC-----CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCC
Confidence 999999996654 7899999999999999 8899999999999999998655444333332 789999999997
Q ss_pred C-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCC
Q 012799 252 G-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330 (456)
Q Consensus 252 ~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (456)
. .+++++.|++|++||+++.+....+.+|.+.++.++++|+ +.
T Consensus 162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpD------------------------------------Gs 205 (315)
T KOG0279|consen 162 NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPD------------------------------------GS 205 (315)
T ss_pred CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCC------------------------------------CC
Confidence 4 9999999999999999999999999999999999999999 55
Q ss_pred EEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEeccc-------c
Q 012799 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV-------G 403 (456)
Q Consensus 331 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~ 403 (456)
..++|+.||.+.+||++.++... ..+|...|.+++|+|+.-.|+.+. +..|+|||+.++..+..++... +
T Consensus 206 lcasGgkdg~~~LwdL~~~k~ly--sl~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~ 282 (315)
T KOG0279|consen 206 LCASGGKDGEAMLWDLNEGKNLY--SLEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAG 282 (315)
T ss_pred EEecCCCCceEEEEEccCCceeE--eccCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccC
Confidence 69999999999999998877632 346788999999999987777765 4459999999998887765221 1
Q ss_pred cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 404 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.+.++ .++|++||..|++|-.|+.|++|
T Consensus 283 ~~~cl-------------------------slaws~dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 283 DPICL-------------------------SLAWSADGQTLFAGYTDNVIRVW 310 (315)
T ss_pred CcEEE-------------------------EEEEcCCCcEEEeeecCCcEEEE
Confidence 23333 23999999999999999999998
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.3e-43 Score=276.34 Aligned_cols=266 Identities=24% Similarity=0.402 Sum_probs=239.4
Q ss_pred CeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC-ccccccCcccceEEE
Q 012799 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP-SGNPLSGHKKWITGI 199 (456)
Q Consensus 121 ~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~ 199 (456)
-+||+++.|-+|++|...+|.+..+++...+.|+.+...|+++.||+++.- .|++||++++++ ....+.+|.+.|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEE
Confidence 479999999999999999999999999888999999999999999998764 799999999876 444688999999999
Q ss_pred EecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEe-
Q 012799 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIREL- 277 (456)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~- 277 (456)
.|.. +|+.+++|++||+++|||++...+.+.+. |..+|+++..+|+. .|++|..+|.|++||+.+..+...+
T Consensus 90 gF~~-----dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li 163 (311)
T KOG0315|consen 90 GFQC-----DGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI 163 (311)
T ss_pred EEee-----cCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC
Confidence 9998 99999999999999999999977766665 67999999999987 9999999999999999988666554
Q ss_pred ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC-----CC
Q 012799 278 KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-----QP 352 (456)
Q Consensus 278 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~ 352 (456)
......|.++.+.|+ +.+++.+...|..++|++.... .+
T Consensus 164 Pe~~~~i~sl~v~~d------------------------------------gsml~a~nnkG~cyvW~l~~~~~~s~l~P 207 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPD------------------------------------GSMLAAANNKGNCYVWRLLNHQTASELEP 207 (311)
T ss_pred CCCCcceeeEEEcCC------------------------------------CcEEEEecCCccEEEEEccCCCccccceE
Confidence 345578999999998 6669999999999999976533 45
Q ss_pred ccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCC-eEEEEEecccccEEEEEeeeeeeecCCCCceeeeccccc
Q 012799 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCC 431 (456)
Q Consensus 353 ~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ 431 (456)
+.++..|.+.+..+.+|||+++||+++.|.+++||+..+. +.-..+++|...+++.
T Consensus 208 ~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc----------------------- 264 (311)
T KOG0315|consen 208 VHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDC----------------------- 264 (311)
T ss_pred hhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEee-----------------------
Confidence 6678899999999999999999999999999999999987 6677889999999999
Q ss_pred ccceeEecCCCeEEEeeCCCceEEC
Q 012799 432 MSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 432 ~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+||.||+||+||+.|+.+++|
T Consensus 265 ----~FS~dg~YlvTassd~~~rlW 285 (311)
T KOG0315|consen 265 ----AFSADGEYLVTASSDHTARLW 285 (311)
T ss_pred ----eeccCccEEEecCCCCceeec
Confidence 899999999999999999999
No 10
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.5e-43 Score=285.79 Aligned_cols=296 Identities=27% Similarity=0.423 Sum_probs=258.2
Q ss_pred cccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 012799 97 VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQC 176 (456)
Q Consensus 97 ~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v 176 (456)
+.+..+.+.||.+.|.|+++.|-..+|++|+.|++++|||+.+++...++.+|...|..+++++...|+++++.|+.|+.
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEE
Q 012799 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIY 255 (456)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~ 255 (456)
||++..+.+. .+.+|-..|.+++.+| .-+.+++|+.|.++++||+++...+..+.+|..+|..+.+.|-. .++
T Consensus 220 wDLe~nkvIR-~YhGHlS~V~~L~lhP-----Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi 293 (460)
T KOG0285|consen 220 WDLEYNKVIR-HYHGHLSGVYCLDLHP-----TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVI 293 (460)
T ss_pred EechhhhhHH-HhccccceeEEEeccc-----cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceE
Confidence 9999988776 7889999999999999 66899999999999999999999999999999999999999855 999
Q ss_pred EEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEE
Q 012799 256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (456)
Q Consensus 256 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (456)
+|+.|++|++||++.|+....+..|...+.+++.+|.. ..++++
T Consensus 294 t~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e------------------------------------~~fASa 337 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKE------------------------------------NLFASA 337 (460)
T ss_pred EecCCceEEEeeeccCceeEeeecccceeeEEecCCch------------------------------------hhhhcc
Confidence 99999999999999999999999999999999999973 336666
Q ss_pred eCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeee
Q 012799 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYC 415 (456)
Q Consensus 336 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 415 (456)
+.| .|+.|++..+.. ...+.+|...|++++.+.|| ++++|+..|.+.+||.++|-..+....-..+ -+
T Consensus 338 s~d-nik~w~~p~g~f-~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqp-GS-------- 405 (460)
T KOG0285|consen 338 SPD-NIKQWKLPEGEF-LQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQP-GS-------- 405 (460)
T ss_pred CCc-cceeccCCccch-hhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccC-Cc--------
Confidence 655 689999776654 44488999999999998776 7889999999999999998665544211110 00
Q ss_pred ecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 416 FRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.+++.+|.+.+|...|..|++|..|.+|++|
T Consensus 406 ----------l~sEagI~as~fDktg~rlit~eadKtIk~~ 436 (460)
T KOG0285|consen 406 ----------LESEAGIFASCFDKTGSRLITGEADKTIKMY 436 (460)
T ss_pred ----------cccccceeEEeecccCceEEeccCCcceEEE
Confidence 1223333344889999999999999999998
No 11
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.2e-44 Score=298.61 Aligned_cols=282 Identities=24% Similarity=0.447 Sum_probs=253.6
Q ss_pred cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 012799 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP 184 (456)
Q Consensus 105 ~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 184 (456)
..-..+|..+.|.|+|+.|++|+..|.+.+|+..+......++.|..+|.++.|++++.++++|+.+|.|++|+..-...
T Consensus 93 NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV 172 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV 172 (464)
T ss_pred cccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh
Confidence 34466899999999999999999999999999876655566779999999999999999999999999999999876554
Q ss_pred ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcE
Q 012799 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTI 263 (456)
Q Consensus 185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i 263 (456)
.. ....|...|.+++|+| +...|++++.||+|+|||....+....+.+|.-.|.+++|+|.. .+++++.|..|
T Consensus 173 k~-~~ahh~eaIRdlafSp-----nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlV 246 (464)
T KOG0284|consen 173 KI-IQAHHAEAIRDLAFSP-----NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLV 246 (464)
T ss_pred HH-hhHhhhhhhheeccCC-----CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCcee
Confidence 32 4455558999999999 77899999999999999999999988999999999999999976 99999999999
Q ss_pred EEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEE
Q 012799 264 KVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL 343 (456)
Q Consensus 264 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 343 (456)
++||.+++.++.++..|...|..+.|+++ +++|++++.|..+++
T Consensus 247 KlWDprSg~cl~tlh~HKntVl~~~f~~n------------------------------------~N~Llt~skD~~~kv 290 (464)
T KOG0284|consen 247 KLWDPRSGSCLATLHGHKNTVLAVKFNPN------------------------------------GNWLLTGSKDQSCKV 290 (464)
T ss_pred EeecCCCcchhhhhhhccceEEEEEEcCC------------------------------------CCeeEEccCCceEEE
Confidence 99999999999999999999999999998 567999999999999
Q ss_pred EecCCCCCCccccccccccEeEEEECC-CCCEEEEEECCCcEEEEeCCCCeEEEEE-ecccccEEEEEeeeeeeecCCCC
Q 012799 344 WEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVF-RGHVGPVYQIRFELIYCFRYPSN 421 (456)
Q Consensus 344 wd~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~~~~ 421 (456)
+|++. .+.+..+++|+..+++++|+| ...+|.+|+.||.|..|.+...+++..+ .+|...|+++
T Consensus 291 ~DiR~-mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl------------- 356 (464)
T KOG0284|consen 291 FDIRT-MKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSL------------- 356 (464)
T ss_pred EehhH-hHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeee-------------
Confidence 99883 445667889999999999999 6778999999999999999855555544 4899999999
Q ss_pred ceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 422 FYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 422 ~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+|+|-|.+|++|+.|.++++|
T Consensus 357 --------------~~hPlGhil~tgsnd~t~rfw 377 (464)
T KOG0284|consen 357 --------------AYHPLGHILATGSNDRTVRFW 377 (464)
T ss_pred --------------eccccceeEeecCCCcceeee
Confidence 999999999999999999999
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-41 Score=291.79 Aligned_cols=348 Identities=22% Similarity=0.384 Sum_probs=284.0
Q ss_pred CcCcccEEEEEEeccceEEE-------------eecccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc
Q 012799 75 KVSVEKVLSIVYQPQAVFRI-------------RPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT 141 (456)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~ 141 (456)
..+...++.+.+.|...||+ -|+.+-..+++.|..-|.|+.|+|||.++|+++.||+|.+||-.+++
T Consensus 144 ~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge 223 (603)
T KOG0318|consen 144 TGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE 223 (603)
T ss_pred eccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc
Confidence 34667778888888776664 24455678889999999999999999999999999999999999999
Q ss_pred ceeEEe---cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcc--cceEEEEecccccCCCCCEEEEE
Q 012799 142 PMFKCT---GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK--KWITGISWEPVHLNAPCRRFVSA 216 (456)
Q Consensus 142 ~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~l~~~ 216 (456)
.+..+. +|.+.|.+++|+||++.+++++.|.+++|||+.+.+...+...+.. .....+-|. ...|++.
T Consensus 224 ~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-------kd~lItV 296 (603)
T KOG0318|consen 224 KVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-------KDHLITV 296 (603)
T ss_pred EEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-------CCeEEEE
Confidence 999988 8999999999999999999999999999999999987665444433 344455563 3689999
Q ss_pred eCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEe-ecCCcceEEEEecCcce
Q 012799 217 SKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIREL-KGHGHWVNSLALSTEYA 294 (456)
Q Consensus 217 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~ 294 (456)
+.+|.|.+++......+..+.+|...|+++..++++ .|++|+.||.|.-||..++..-+.. +.|...|.+++.+....
T Consensus 297 Sl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~ 376 (603)
T KOG0318|consen 297 SLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE 376 (603)
T ss_pred EcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCc
Confidence 999999999999999999999999999999999999 9999999999999999988765544 56888888888877666
Q ss_pred eeeccccCCCCccCChHH-------------HHH-------------------------------HHHhhhhhccCCCCC
Q 012799 295 LRTGAFDHTGKQYSSPEE-------------MKK-------------------------------AALERYNKIKGNAPE 330 (456)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~-------------~~~-------------------------------~~~~~~~~~~~~~~~ 330 (456)
+...++|...+....... ... ...........+++.
T Consensus 377 ~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~ 456 (603)
T KOG0318|consen 377 LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS 456 (603)
T ss_pred EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC
Confidence 666666554443321100 000 000011112467788
Q ss_pred EEEEEeCCCcEEEEecCCCC-CCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEE-EEecccccEEEE
Q 012799 331 RLVSGSDDFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA-VFRGHVGPVYQI 408 (456)
Q Consensus 331 ~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~i 408 (456)
.++.|+.|+.+++|.+.... ........|..+|++++||||+.|||+|...+.+.+||+.+.+... ...-|+..|+++
T Consensus 457 ~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~ 536 (603)
T KOG0318|consen 457 EVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCV 536 (603)
T ss_pred EEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEE
Confidence 99999999999999987655 3344677899999999999999999999999999999999887633 334599999999
Q ss_pred EeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+|+|+..++||||-|.+|.||
T Consensus 537 ---------------------------aWsP~n~~vATGSlDt~Viiy 557 (603)
T KOG0318|consen 537 ---------------------------AWSPNNKLVATGSLDTNVIIY 557 (603)
T ss_pred ---------------------------EeCCCceEEEeccccceEEEE
Confidence 999999999999999999998
No 13
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.4e-42 Score=274.48 Aligned_cols=286 Identities=25% Similarity=0.475 Sum_probs=252.2
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCC-CCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN-TQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 179 (456)
.-.+.||.+.|+.+.|+|+|.+||+|+.|..|.+|++. ..+....+++|.+.|..+.|.+|++.|++++.|.+++.||.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 44678999999999999999999999999999999954 44556778899999999999999999999999999999999
Q ss_pred CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe
Q 012799 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS 258 (456)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~ 258 (456)
++|+... ...+|...|..+. |... .-.++.+++.||++++||+++...++++. .+..++++.|..++ .+++|+
T Consensus 120 ~tG~~~r-k~k~h~~~vNs~~--p~rr--g~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sgg 193 (338)
T KOG0265|consen 120 ETGKRIR-KHKGHTSFVNSLD--PSRR--GPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGG 193 (338)
T ss_pred ccceeee-hhccccceeeecC--cccc--CCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeecc
Confidence 9999876 6788999998887 4322 33577789999999999999998888774 46789999999988 999999
Q ss_pred CCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC
Q 012799 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (456)
Q Consensus 259 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 338 (456)
-|+.|++||++.+.....+.+|..+|+.+..++. +.++.+-+.|
T Consensus 194 Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~------------------------------------gs~llsnsMd 237 (338)
T KOG0265|consen 194 IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRY------------------------------------GSFLLSNSMD 237 (338)
T ss_pred ccCceeeeccccCcceEEeecccCceeeEEeccC------------------------------------CCcccccccc
Confidence 9999999999999999999999999999999998 5669999999
Q ss_pred CcEEEEecCCCC---CCcccccccc----ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEee
Q 012799 339 FTMFLWEPAVSK---QPKTRMTGHQ----QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411 (456)
Q Consensus 339 g~i~iwd~~~~~---~~~~~~~~~~----~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~ 411 (456)
.++++||++.-. ..+..+.+|. .....++|+|+++.+.+|+.|..+++||......+..+.||.+.|+.+
T Consensus 238 ~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~--- 314 (338)
T KOG0265|consen 238 NTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEV--- 314 (338)
T ss_pred ceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEe---
Confidence 999999977532 2244444543 235678999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799 412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i 455 (456)
+|+|...+|.+++.|.+|++
T Consensus 315 ------------------------~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 315 ------------------------DFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ------------------------eecCCCcEEEEeccCceeEe
Confidence 89999999999999999986
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.5e-42 Score=290.37 Aligned_cols=284 Identities=27% Similarity=0.506 Sum_probs=254.7
Q ss_pred cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc
Q 012799 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 187 (456)
+..|++++|+.+|..||+|+.||.+++|+.. +..+.++..|.++|.++.|+.+|+||++++.|+++.+||..++....
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q- 312 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ- 312 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE-
Confidence 4689999999999999999999999999965 77788899999999999999999999999999999999999887654
Q ss_pred cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEE
Q 012799 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW 266 (456)
Q Consensus 188 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iw 266 (456)
.+.-|..+-..+.|.. ...|++.+.|+.|+++.+....++.++.+|.++|.++.|+|.+ .|++++.|++++||
T Consensus 313 ~f~~~s~~~lDVdW~~------~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiW 386 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQS------NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIW 386 (524)
T ss_pred eeeeccCCccceEEec------CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEee
Confidence 4566777767788864 4689999999999999999999999999999999999999999 99999999999999
Q ss_pred ECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEec
Q 012799 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP 346 (456)
Q Consensus 267 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 346 (456)
+.........+..|...|..+.|+|.+....... .+..+++++.|++|++||+
T Consensus 387 s~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~---------------------------~~~~l~sas~dstV~lwdv 439 (524)
T KOG0273|consen 387 SMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPN---------------------------MNLMLASASFDSTVKLWDV 439 (524)
T ss_pred ecCCCcchhhhhhhccceeeEeecCCCCccCCCc---------------------------CCceEEEeecCCeEEEEEc
Confidence 9999999999999999999999999865533222 2556999999999999997
Q ss_pred CCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeee
Q 012799 347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV 426 (456)
Q Consensus 347 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~ 426 (456)
..+ .++..+..|..+|.+++|+|+|+++|+|+.||.|.+|+++++++++.+.+ .+.|..+
T Consensus 440 ~~g-v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel------------------ 499 (524)
T KOG0273|consen 440 ESG-VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFEL------------------ 499 (524)
T ss_pred cCC-ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEE------------------
Confidence 655 46667889999999999999999999999999999999999999999885 4558888
Q ss_pred cccccccceeEecCCCeEEEeeCCCceEE
Q 012799 427 DMSCCMSLYSWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 427 ~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i 455 (456)
+|+.+|.+|..+-.||.+++
T Consensus 500 ---------~Wn~~G~kl~~~~sd~~vcv 519 (524)
T KOG0273|consen 500 ---------CWNAAGDKLGACASDGSVCV 519 (524)
T ss_pred ---------EEcCCCCEEEEEecCCCceE
Confidence 99999999999999998875
No 15
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.6e-41 Score=278.69 Aligned_cols=318 Identities=25% Similarity=0.429 Sum_probs=255.9
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 179 (456)
...+|..|++.|.+++.+|+.+++|||+.|..-.+|++.++.....+.+|+..|+++.|+.+|.+||||+.+|.|+||+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe
Q 012799 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS 258 (456)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~ 258 (456)
.++..... +...-..+.=+.|+| .+..|++|+.||.+.+|.+.++...+.+.+|+.++++-.|.|+| +++++.
T Consensus 136 stg~~~~~-~~~e~~dieWl~WHp-----~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 136 STGGEQWK-LDQEVEDIEWLKWHP-----RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGY 209 (399)
T ss_pred ccCceEEE-eecccCceEEEEecc-----cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEe
Confidence 99887653 334456677888998 77899999999999999999988889999999999999999999 999999
Q ss_pred CCCcEEEEECCCCeEEEEeecC-CcceEEEEecCcceee-eccc--------cCCCCc----------cCChHHHHHHHH
Q 012799 259 QDCTIKVWETTQGKLIRELKGH-GHWVNSLALSTEYALR-TGAF--------DHTGKQ----------YSSPEEMKKAAL 318 (456)
Q Consensus 259 ~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~-~~~~--------~~~~~~----------~~~~~~~~~~~~ 318 (456)
.||+|++||+.+++++..+... .....++.++...... .+.. ...++. ............
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esv 289 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESV 289 (399)
T ss_pred cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhh
Confidence 9999999999999998887632 2223333333222111 1100 011111 110111000001
Q ss_pred hhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEE
Q 012799 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF 398 (456)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 398 (456)
. .......-.+.++|+-||+|.|||+... ..+....|...|..+.|-+ ..+|++++.+|.|+.||.++|+++.++
T Consensus 290 e--~~~~ss~lpL~A~G~vdG~i~iyD~a~~--~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y 364 (399)
T KOG0296|consen 290 E--SIPSSSKLPLAACGSVDGTIAIYDLAAS--TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTY 364 (399)
T ss_pred h--hcccccccchhhcccccceEEEEecccc--hhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEE
Confidence 0 0112223345789999999999997543 3445567899999999998 789999999999999999999999999
Q ss_pred ecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799 399 RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 399 ~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i 455 (456)
.+|...|.++ +.+|++++++|+|.|++.+|
T Consensus 365 ~GH~~~Il~f---------------------------~ls~~~~~vvT~s~D~~a~V 394 (399)
T KOG0296|consen 365 TGHQMGILDF---------------------------ALSPQKRLVVTVSDDNTALV 394 (399)
T ss_pred ecCchheeEE---------------------------EEcCCCcEEEEecCCCeEEE
Confidence 9999999999 88999999999999999886
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.5e-41 Score=286.40 Aligned_cols=281 Identities=29% Similarity=0.476 Sum_probs=250.8
Q ss_pred cCCcccEEEEEECCCCC-eEEEEECCCcEEEEeCCCCc----ceeEEe----------cCCCCEEEEEEcCCCCEEEEEe
Q 012799 105 AGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQT----PMFKCT----------GHKNWVLCIAWSADGKHLVSGS 169 (456)
Q Consensus 105 ~~h~~~V~~~~~s~~~~-~l~~~~~d~~v~vwd~~~~~----~~~~~~----------~~~~~v~~~~~~~~~~~l~s~~ 169 (456)
..|..+|.+++|+|-.. .+++|+.|-+.++|++.... ....++ .....|++++|+.+|..||+|+
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~ 254 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS 254 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence 34999999999999766 89999999999999987411 101111 2346799999999999999999
Q ss_pred CCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeC
Q 012799 170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG 249 (456)
Q Consensus 170 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 249 (456)
.||.+++|+...+... .+..|+++|.++.|+. .|++|++++.|+++.+||..++.....+..|..+-.++.|-
T Consensus 255 ~~G~~riw~~~G~l~~--tl~~HkgPI~slKWnk-----~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~ 327 (524)
T KOG0273|consen 255 EDGEARIWNKDGNLIS--TLGQHKGPIFSLKWNK-----KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ 327 (524)
T ss_pred cCcEEEEEecCchhhh--hhhccCCceEEEEEcC-----CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe
Confidence 9999999998655433 6889999999999998 99999999999999999999999999999899888889999
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCC
Q 012799 250 GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (456)
Q Consensus 250 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (456)
.+..+++++.||.|+++.+....++.++.+|.+.|.++.|+|. +
T Consensus 328 ~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~t------------------------------------g 371 (524)
T KOG0273|consen 328 SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPT------------------------------------G 371 (524)
T ss_pred cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCC------------------------------------C
Confidence 8889999999999999999999999999999999999999998 5
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCC---------CEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG---------QWVASASFDKSIKLWNGTTGKFVAVFRG 400 (456)
Q Consensus 330 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~---------~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 400 (456)
..|++++.|++++||... .......+.+|...|..+.|+|.| ..+++++.|++|++||+..|.++.+|..
T Consensus 372 ~LLaS~SdD~TlkiWs~~-~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k 450 (524)
T KOG0273|consen 372 SLLASCSDDGTLKIWSMG-QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK 450 (524)
T ss_pred ceEEEecCCCeeEeeecC-CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc
Confidence 569999999999999944 445667788999999999999964 4799999999999999999999999999
Q ss_pred ccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 401 HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 401 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
|..+|+++ +|+|+|++||+|+.||.|.||
T Consensus 451 H~~pVysv---------------------------afS~~g~ylAsGs~dg~V~iw 479 (524)
T KOG0273|consen 451 HQEPVYSV---------------------------AFSPNGRYLASGSLDGCVHIW 479 (524)
T ss_pred CCCceEEE---------------------------EecCCCcEEEecCCCCeeEec
Confidence 99999999 899999999999999999999
No 17
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-41 Score=281.56 Aligned_cols=288 Identities=24% Similarity=0.375 Sum_probs=245.9
Q ss_pred ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcc---eeEEecCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 012799 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP---MFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL 174 (456)
Q Consensus 98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 174 (456)
.+..+.|..|++.|.-+.||++|++||+++.|.+..+|++..... .+++.+|..+|..+.|+||.++|++|+.|..+
T Consensus 214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~ 293 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVL 293 (519)
T ss_pred chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhe
Confidence 445678999999999999999999999999999999998865544 67888999999999999999999999999999
Q ss_pred EEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCc-CccEEEEEeCCCC-
Q 012799 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH-TLAVTCVKWGGDG- 252 (456)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~- 252 (456)
.+||..+|........++...+.+++|.| ||..+++|+.|+.+..||+.... ....++- ...|.+++..+||
T Consensus 294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-----Dg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk 367 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCP-----DGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGK 367 (519)
T ss_pred eeccCCcchhhhhcccCcCCCcceeEEcc-----CCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCc
Confidence 99999999987655566678899999999 99999999999999999986443 3333332 3569999999999
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE
Q 012799 253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (456)
Q Consensus 253 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 332 (456)
.+++.+.|..|++|+..+......+. ...+|++++++.+ +.++
T Consensus 368 ~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d------------------------------------~k~~ 410 (519)
T KOG0293|consen 368 YVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKD------------------------------------GKLA 410 (519)
T ss_pred EEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCC------------------------------------CcEE
Confidence 88888999999999988765544343 5678999999988 5568
Q ss_pred EEEeCCCcEEEEecCCCCCCcccccccccc--EeEEEECC-CCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEE
Q 012799 333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQL--VNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIR 409 (456)
Q Consensus 333 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 409 (456)
++.-.+..+++||+. ....+.+..||... +-.-||-- +..++++|++|+.|+||+..+|+++.++.||...|+++
T Consensus 411 LvnL~~qei~LWDl~-e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcV- 488 (519)
T KOG0293|consen 411 LVNLQDQEIHLWDLE-ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCV- 488 (519)
T ss_pred EEEcccCeeEEeecc-hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEE-
Confidence 889999999999987 45566677788753 33345544 56899999999999999999999999999999999999
Q ss_pred eeeeeeecCCCCceeeecccccccceeEecCC-CeEEEeeCCCceEEC
Q 012799 410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLKVT 456 (456)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~s~s~Dg~v~iW 456 (456)
+|+|.. .++|+||+||+||||
T Consensus 489 --------------------------swNP~~p~m~ASasDDgtIRIW 510 (519)
T KOG0293|consen 489 --------------------------SWNPADPEMFASASDDGTIRIW 510 (519)
T ss_pred --------------------------ecCCCCHHHhhccCCCCeEEEe
Confidence 999965 589999999999999
No 18
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.2e-39 Score=287.11 Aligned_cols=286 Identities=41% Similarity=0.670 Sum_probs=257.5
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 180 (456)
.+++++|.++|++++|+|++++|++++.||.|++|++.+++....+..|...+..+.|+|+++++++++.||.|++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 35678999999999999999999999999999999999988888888999999999999999999999999999999999
Q ss_pred CCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeC
Q 012799 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ 259 (456)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~ 259 (456)
+++... .+..|...+.++.|.+ ++.++++++.+|.+++||+++++....+..|...+.+++|+|++ .+++++.
T Consensus 82 ~~~~~~-~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 155 (289)
T cd00200 82 TGECVR-TLTGHTSYVSSVAFSP-----DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ 155 (289)
T ss_pred cccceE-EEeccCCcEEEEEEcC-----CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC
Confidence 876554 4667888999999998 67788888889999999999999999898899999999999988 6666666
Q ss_pred CCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC
Q 012799 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339 (456)
Q Consensus 260 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 339 (456)
+|.|++||+++++.+..+..+...+.++.++++ +..+++++.++
T Consensus 156 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~------------------------------------~~~l~~~~~~~ 199 (289)
T cd00200 156 DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPD------------------------------------GEKLLSSSSDG 199 (289)
T ss_pred CCcEEEEEccccccceeEecCccccceEEECCC------------------------------------cCEEEEecCCC
Confidence 999999999999988889888889999999987 45588888899
Q ss_pred cEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCC
Q 012799 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYP 419 (456)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~ 419 (456)
.+++||++.. .....+..|...+.+++|+|++.++++++.||.+++||+.+++.+..+..|...+.++
T Consensus 200 ~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~----------- 267 (289)
T cd00200 200 TIKLWDLSTG-KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSL----------- 267 (289)
T ss_pred cEEEEECCCC-ceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEE-----------
Confidence 9999997654 3445555788899999999999899998889999999999999999999999999999
Q ss_pred CCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 420 SNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+|+|++++|++++.||.|++|
T Consensus 268 ----------------~~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 268 ----------------AWSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred ----------------EECCCCCEEEEecCCCeEEec
Confidence 899999999999999999999
No 19
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1e-39 Score=254.67 Aligned_cols=275 Identities=24% Similarity=0.446 Sum_probs=242.3
Q ss_pred ceEEEee--cccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc--ceeEEecCCCCEEEEEEcCCCCEE
Q 012799 90 AVFRIRP--VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHL 165 (456)
Q Consensus 90 ~~~~~~~--~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l 165 (456)
...++|. .+.|.++++.....|+.+...|+++.||+++.. .|++||++++. ++.++.+|...|+++.|..+|+.+
T Consensus 20 hTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWM 98 (311)
T KOG0315|consen 20 HTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWM 98 (311)
T ss_pred ceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEE
Confidence 4455664 478999999999999999999999999999754 79999998765 588999999999999999999999
Q ss_pred EEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCcCccEE
Q 012799 166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-SGHTLAVT 244 (456)
Q Consensus 166 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~ 244 (456)
++|++||+++|||++..... ....|..+|+++..+| +...|++|..+|.|++||+....+...+ ......|.
T Consensus 99 yTgseDgt~kIWdlR~~~~q--R~~~~~spVn~vvlhp-----nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~ 171 (311)
T KOG0315|consen 99 YTGSEDGTVKIWDLRSLSCQ--RNYQHNSPVNTVVLHP-----NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQ 171 (311)
T ss_pred EecCCCceEEEEeccCcccc--hhccCCCCcceEEecC-----CcceEEeecCCCcEEEEEccCCccccccCCCCCccee
Confidence 99999999999999984433 4666789999999999 8889999999999999999988776655 34567899
Q ss_pred EEEeCCCC-eEEEEeCCCcEEEEECCCC------eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHH
Q 012799 245 CVKWGGDG-VIYTGSQDCTIKVWETTQG------KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA 317 (456)
Q Consensus 245 ~~~~~~~~-~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (456)
++...|+| +++++...|..++|++-+. +++..++.|...+....++|+
T Consensus 172 sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd------------------------- 226 (311)
T KOG0315|consen 172 SLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD------------------------- 226 (311)
T ss_pred eEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC-------------------------
Confidence 99999999 8888889999999998764 356678889999999999998
Q ss_pred HhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEE
Q 012799 318 LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV 397 (456)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~ 397 (456)
..+|++++.|.+++||+....-+....+.+|+..+..++||.||+||++|+.|+.+++|++..++.+..
T Consensus 227 -----------~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 227 -----------VKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQ 295 (311)
T ss_pred -----------CcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeee
Confidence 667999999999999997766455567889999999999999999999999999999999999999999
Q ss_pred EecccccEEEE
Q 012799 398 FRGHVGPVYQI 408 (456)
Q Consensus 398 ~~~~~~~v~~i 408 (456)
+.+|-.+..++
T Consensus 296 y~gh~K~~vc~ 306 (311)
T KOG0315|consen 296 YQGHHKAAVCV 306 (311)
T ss_pred cCCcccccEEE
Confidence 99998877776
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-40 Score=261.49 Aligned_cols=254 Identities=25% Similarity=0.405 Sum_probs=218.5
Q ss_pred ecccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 012799 96 PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ 175 (456)
Q Consensus 96 ~~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 175 (456)
..+..++.|+||+..|..++.++||++.++++.|+++++||+.+++....+.+|...|.+++|++|.+.+++|+.|.+|+
T Consensus 51 ~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTik 130 (315)
T KOG0279|consen 51 KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIK 130 (315)
T ss_pred ccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceee
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eE
Q 012799 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI 254 (456)
Q Consensus 176 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l 254 (456)
+|+...+......-..+...|.++.|+|.. +..+|++++.|++|++||+++.+....+.+|.+.++.++++||| ..
T Consensus 131 lwnt~g~ck~t~~~~~~~~WVscvrfsP~~---~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslc 207 (315)
T KOG0279|consen 131 LWNTLGVCKYTIHEDSHREWVSCVRFSPNE---SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLC 207 (315)
T ss_pred eeeecccEEEEEecCCCcCcEEEEEEcCCC---CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEE
Confidence 999976554432223348899999999954 46799999999999999999999999999999999999999999 88
Q ss_pred EEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799 255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (456)
Q Consensus 255 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (456)
++|+.||.+.+||++.++.+..+. +...|.+++|+|+. +.++
T Consensus 208 asGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnr-------------------------------------ywL~ 249 (315)
T KOG0279|consen 208 ASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNR-------------------------------------YWLC 249 (315)
T ss_pred ecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCc-------------------------------------eeEe
Confidence 899999999999999999988876 78899999999973 3455
Q ss_pred EeCCCcEEEEecCCCCCCcc---cccc-----ccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799 335 GSDDFTMFLWEPAVSKQPKT---RMTG-----HQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (456)
Q Consensus 335 ~~~dg~i~iwd~~~~~~~~~---~~~~-----~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 390 (456)
+..+..|+|||+........ ...+ ......+++|++||..|++|-.|+.|++|.+.
T Consensus 250 ~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 250 AATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 55566799999776542211 1111 23346788999999999999999999999864
No 21
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=7.2e-42 Score=290.73 Aligned_cols=293 Identities=24% Similarity=0.380 Sum_probs=256.7
Q ss_pred EeecccccccccCCcccEEEEEECC-CCCeEEEEECCCcEEEEeCCC-CcceeEEecCCCCEEEEEEcCCCCEEEEEeCC
Q 012799 94 IRPVNRCSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNT-QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA 171 (456)
Q Consensus 94 ~~~~~~~~~~l~~h~~~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 171 (456)
...+.+.++++.||+..|+++.|.| .+.+|++++.|+.|+||++.. +.++.++.+|..+|..++|+++|..+++++.|
T Consensus 200 c~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD 279 (503)
T KOG0282|consen 200 CYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFD 279 (503)
T ss_pred eeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecc
Confidence 4445667889999999999999999 899999999999999999876 88999999999999999999999999999999
Q ss_pred CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCC-CEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC
Q 012799 172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPC-RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG 250 (456)
Q Consensus 172 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 250 (456)
+.+++||.++|+..... .....++++.|+| ++ +.|++|+.|+.|+.||+++++.++.+..|-+.|..+.|-+
T Consensus 280 ~~lKlwDtETG~~~~~f--~~~~~~~cvkf~p-----d~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~ 352 (503)
T KOG0282|consen 280 RFLKLWDTETGQVLSRF--HLDKVPTCVKFHP-----DNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVD 352 (503)
T ss_pred eeeeeeccccceEEEEE--ecCCCceeeecCC-----CCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEcc
Confidence 99999999999987532 2345678999999 44 8999999999999999999999999999999999999999
Q ss_pred CC-eEEEEeCCCcEEEEECCCCeEEEEeec-CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCC
Q 012799 251 DG-VIYTGSQDCTIKVWETTQGKLIRELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (456)
Q Consensus 251 ~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (456)
+| ++++.+.|+++++|+.+.+.+++.+.. ......++..+|.
T Consensus 353 ~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~------------------------------------ 396 (503)
T KOG0282|consen 353 EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPN------------------------------------ 396 (503)
T ss_pred CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCC------------------------------------
Confidence 99 999999999999999998877665532 3445677888887
Q ss_pred CCEEEEEeCCCcEEEEecCCCC--CCcccccccc--ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEeccccc
Q 012799 329 PERLVSGSDDFTMFLWEPAVSK--QPKTRMTGHQ--QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP 404 (456)
Q Consensus 329 ~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~--~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 404 (456)
+.++++-+.|+.|.+|.+...- .....+.+|. +.-..+.|||||++|++|+.||.+.+||.++-+++..++.|.++
T Consensus 397 ~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ 476 (503)
T KOG0282|consen 397 GKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQP 476 (503)
T ss_pred CCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcc
Confidence 5568899999999999854332 2344566775 45677899999999999999999999999999999999999999
Q ss_pred EEEEEeeeeeeecCCCCceeeecccccccceeEecCC-CeEEEeeCCCceEEC
Q 012799 405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLKVT 456 (456)
Q Consensus 405 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~s~s~Dg~v~iW 456 (456)
+..+ .|+|-. ..+||||.||.|++|
T Consensus 477 ci~v---------------------------~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 477 CIGV---------------------------DWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred eEEE---------------------------EecCCCcceeEecccCceeEec
Confidence 9999 899865 589999999999999
No 22
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.9e-39 Score=254.47 Aligned_cols=281 Identities=29% Similarity=0.460 Sum_probs=237.8
Q ss_pred cccccCCcccEEEEEECCC-CCeEEEEECCCcEEEEeCCCCc---ceeEE-ecCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 012799 101 SATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQT---PMFKC-TGHKNWVLCIAWSADGKHLVSGSKAGELQ 175 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~-~~~l~~~~~d~~v~vwd~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 175 (456)
.+.+.+|.+.|..++|+|- |..||+|+.|+.|++|+...+. +...+ .+|...|.+++|+|.|++|++++.|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 4578899999999999998 8899999999999999988532 22222 37999999999999999999999999999
Q ss_pred EEeCCCCCC-ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC---CeEEEEecCcCccEEEEEeCCC
Q 012799 176 CWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL---RKCVICLSGHTLAVTCVKWGGD 251 (456)
Q Consensus 176 vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~ 251 (456)
||.-..+.. ....+.+|..+|.+++|++ +|++||+++.|+.|.||.+.. -++...++.|...|..+.|+|.
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~-----sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWSA-----SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEcC-----CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence 998775542 2236889999999999999 999999999999999999874 3577888999999999999996
Q ss_pred C-eEEEEeCCCcEEEEECC---CCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCC
Q 012799 252 G-VIYTGSQDCTIKVWETT---QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327 (456)
Q Consensus 252 ~-~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (456)
. .|++++.|++|++|+-. .-.+++++.+|...|.+++|++.
T Consensus 162 ~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~----------------------------------- 206 (312)
T KOG0645|consen 162 EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNI----------------------------------- 206 (312)
T ss_pred cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCC-----------------------------------
Confidence 6 99999999999999876 34678999999999999999997
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCC------eEEE-EEec
Q 012799 328 APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG------KFVA-VFRG 400 (456)
Q Consensus 328 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~------~~~~-~~~~ 400 (456)
+.+++++++|++++||..... ...-|...+..+.|. ...|++++.|+.|++|..... +++. .-..
T Consensus 207 -G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~a 278 (312)
T KOG0645|consen 207 -GSRLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGA 278 (312)
T ss_pred -CceEEEecCCcceEeeeeccC-----cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcc
Confidence 677999999999999985422 123467889999998 447999999999999976542 1111 2346
Q ss_pred ccccEEEEEeeeeeeecCCCCceeeecccccccceeEecC-CCeEEEeeCCCceEEC
Q 012799 401 HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD-SRLLLSGSKDSTLKVT 456 (456)
Q Consensus 401 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-g~~l~s~s~Dg~v~iW 456 (456)
|...|+++ +|.|. ...|++||.||.|++|
T Consensus 279 He~dVNsV---------------------------~w~p~~~~~L~s~~DDG~v~~W 308 (312)
T KOG0645|consen 279 HEVDVNSV---------------------------QWNPKVSNRLASGGDDGIVNFW 308 (312)
T ss_pred cccccceE---------------------------EEcCCCCCceeecCCCceEEEE
Confidence 88889988 99995 6799999999999998
No 23
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.4e-41 Score=304.47 Aligned_cols=276 Identities=29% Similarity=0.502 Sum_probs=242.0
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 179 (456)
|..++..-...++|..|++|+.+||.|..|..|++|.+... .+..+++ ... -..+=+.+.|-.+.+.|.
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~-~~~---------l~~~d~~sad~~~~~~D~ 438 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKD-ASD---------LSNIDTESADVDVDMLDD 438 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccc-hhh---------hccccccccchhhhhccc
Confidence 44555566778999999999999999999999999998754 3333331 111 111223344444666666
Q ss_pred CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe
Q 012799 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS 258 (456)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~ 258 (456)
++..... .+.+|.++|..+.|+| +.++|+++++|+++++|.+.+..++..+++|..+|.++.|+|.| +|++++
T Consensus 439 ~~~~~~~-~L~GH~GPVyg~sFsP-----d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas 512 (707)
T KOG0263|consen 439 DSSGTSR-TLYGHSGPVYGCSFSP-----DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATAS 512 (707)
T ss_pred cCCceeE-EeecCCCceeeeeecc-----cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecC
Confidence 6555444 5899999999999999 88999999999999999999999999999999999999999999 999999
Q ss_pred CCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC
Q 012799 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (456)
Q Consensus 259 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 338 (456)
.|++-++|......+++.+.+|.+.+.|+.|+|+ ..++++|+.|
T Consensus 513 ~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPN------------------------------------s~Y~aTGSsD 556 (707)
T KOG0263|consen 513 HDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPN------------------------------------SNYVATGSSD 556 (707)
T ss_pred CCceeeeeecccCCchhhhcccccccceEEECCc------------------------------------ccccccCCCC
Confidence 9999999999999999999999999999999998 6679999999
Q ss_pred CcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecC
Q 012799 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRY 418 (456)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~ 418 (456)
.++++||+.++. .++.+.||.++|++++|||+|++|++|+.||.|++||+.+|+++..+.+|++.|.++
T Consensus 557 ~tVRlWDv~~G~-~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sl---------- 625 (707)
T KOG0263|consen 557 RTVRLWDVSTGN-SVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSL---------- 625 (707)
T ss_pred ceEEEEEcCCCc-EEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEE----------
Confidence 999999977654 577789999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.||.||..||+||.|.+|++|
T Consensus 626 -----------------sFS~dg~vLasgg~DnsV~lW 646 (707)
T KOG0263|consen 626 -----------------SFSRDGNVLASGGADNSVRLW 646 (707)
T ss_pred -----------------EEecCCCEEEecCCCCeEEEE
Confidence 889999999999999999999
No 24
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.8e-39 Score=299.20 Aligned_cols=287 Identities=33% Similarity=0.553 Sum_probs=253.6
Q ss_pred cccccCC-cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc--ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 012799 101 SATIAGH-TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (456)
Q Consensus 101 ~~~l~~h-~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 177 (456)
...+.+| ...|.++.|+++|+++++++.|+.+++|+..+.+ ....+.+|...|.+++|+|+++++++++.|++|++|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 4445454 8899999999999999999999999999997777 677778999999999999999999999999999999
Q ss_pred eCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEE
Q 012799 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYT 256 (456)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~ 256 (456)
|+.......+.+.+|...|++++|+| +++.+++|+.|++|++||+++++++..+.+|...|++++|++++ .+++
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p-----~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s 305 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSP-----DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVS 305 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecC-----CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEE
Confidence 99555344447889999999999999 88999999999999999999999999999999999999999999 8999
Q ss_pred EeCCCcEEEEECCCCe--EEEEeecCCcc--eEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE
Q 012799 257 GSQDCTIKVWETTQGK--LIRELKGHGHW--VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (456)
Q Consensus 257 ~~~dg~i~iwd~~~~~--~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 332 (456)
++.|+.|++||+.++. +...+..+... +.++.|+|+ +.++
T Consensus 306 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~------------------------------------~~~l 349 (456)
T KOG0266|consen 306 ASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPN------------------------------------GKYL 349 (456)
T ss_pred cCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCC------------------------------------CcEE
Confidence 9999999999999998 56677665544 999999998 6779
Q ss_pred EEEeCCCcEEEEecCCCCCCccccccccc---cEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecc-cccEEEE
Q 012799 333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQ---LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH-VGPVYQI 408 (456)
Q Consensus 333 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~i 408 (456)
++++.|+.+++||+....... ...+|.. .+.+...++.+.++++|+.|+.|++||..++..+..+.+| ...+..+
T Consensus 350 l~~~~d~~~~~w~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~ 428 (456)
T KOG0266|consen 350 LSASLDRTLKLWDLRSGKSVG-TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDL 428 (456)
T ss_pred EEecCCCeEEEEEccCCccee-eecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceecc
Confidence 999999999999987665443 3455555 3445566789999999999999999999999999999999 8888888
Q ss_pred EeeeeeeecCCCCceeeecccccccceeEecCCCeEEEee--CCCceEEC
Q 012799 409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS--KDSTLKVT 456 (456)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s--~Dg~v~iW 456 (456)
+|+|..+++++++ .|+.+++|
T Consensus 429 ---------------------------~~~~~~~~~~s~s~~~d~~~~~w 451 (456)
T KOG0266|consen 429 ---------------------------SSHPTENLIASSSFEGDGLIRLW 451 (456)
T ss_pred ---------------------------ccCCCcCeeeecCcCCCceEEEe
Confidence 8899999999999 79999998
No 25
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.3e-38 Score=254.22 Aligned_cols=244 Identities=28% Similarity=0.457 Sum_probs=222.8
Q ss_pred eEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEE
Q 012799 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223 (456)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~ 223 (456)
+++++|.+.|.++.|++|.++|++++.||.+.|||.-+..... .+.-...+|..++|+| .|+++++|+.|+...
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h-aipl~s~WVMtCA~sP-----Sg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH-AIPLPSSWVMTCAYSP-----SGNFVACGGLDNKCS 122 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee-EEecCceeEEEEEECC-----CCCeEEecCcCceeE
Confidence 6788999999999999999999999999999999998877655 4555678999999999 999999999999999
Q ss_pred EEECCCC------eEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeee
Q 012799 224 IWDVSLR------KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRT 297 (456)
Q Consensus 224 iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 297 (456)
||++.+. ...+.+.+|.+.+.|+.|.+++.|++++.|.+..+||+++++.+..+.+|.+.|.+++++|.
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~----- 197 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPS----- 197 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCC-----
Confidence 9999855 44567889999999999999999999999999999999999999999999999999999994
Q ss_pred ccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEE
Q 012799 298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS 377 (456)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 377 (456)
+++.+++|+.|+..++||++.+ ..++.+.+|+..|++++|.|+|.-+++
T Consensus 198 ------------------------------~~ntFvSg~cD~~aklWD~R~~-~c~qtF~ghesDINsv~ffP~G~afat 246 (343)
T KOG0286|consen 198 ------------------------------DGNTFVSGGCDKSAKLWDVRSG-QCVQTFEGHESDINSVRFFPSGDAFAT 246 (343)
T ss_pred ------------------------------CCCeEEecccccceeeeeccCc-ceeEeecccccccceEEEccCCCeeee
Confidence 2677999999999999998877 577889999999999999999999999
Q ss_pred EECCCcEEEEeCCCCeEEEEEecc--cccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799 378 ASFDKSIKLWNGTTGKFVAVFRGH--VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 378 ~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i 455 (456)
|+.|++.++||++..+.+..+... ..+|+++ +||..|++|++|..|.++.+
T Consensus 247 GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv---------------------------~FS~SGRlLfagy~d~~c~v 299 (343)
T KOG0286|consen 247 GSDDATCRLYDLRADQELAVYSHDSIICGITSV---------------------------AFSKSGRLLFAGYDDFTCNV 299 (343)
T ss_pred cCCCceeEEEeecCCcEEeeeccCcccCCceeE---------------------------EEcccccEEEeeecCCceeE
Confidence 999999999999999998888732 2367777 89999999999999999999
Q ss_pred C
Q 012799 456 T 456 (456)
Q Consensus 456 W 456 (456)
|
T Consensus 300 W 300 (343)
T KOG0286|consen 300 W 300 (343)
T ss_pred e
Confidence 9
No 26
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.7e-39 Score=286.44 Aligned_cols=328 Identities=25% Similarity=0.407 Sum_probs=264.9
Q ss_pred ecccccccccC-CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCC--EEEEEeCCC
Q 012799 96 PVNRCSATIAG-HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK--HLVSGSKAG 172 (456)
Q Consensus 96 ~~~~~~~~l~~-h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg 172 (456)
+.+++++..+. |.+||.-++|+|.+.++++|+.|+.++|||+..+.....+.||.+.|.++.|+|+-+ .|++|..|+
T Consensus 92 ~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~ 171 (775)
T KOG0319|consen 92 PTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDG 171 (775)
T ss_pred ccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCc
Confidence 55678888888 999999999999999999999999999999999999999999999999999999654 588999999
Q ss_pred eEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEE--------------------------
Q 012799 173 ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD-------------------------- 226 (456)
Q Consensus 173 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd-------------------------- 226 (456)
.+++||+++..........|.+.|+++.|.+ ++..+++++.|..+.+||
T Consensus 172 ~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~-----d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~ 246 (775)
T KOG0319|consen 172 TVRVWNLNDKRTCLHTMILHKSAVTSLAFSE-----DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREEL 246 (775)
T ss_pred eEEEEEcccCchHHHHHHhhhhheeeeeecc-----CCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhc
Confidence 9999999987764457888999999999988 444555555555555554
Q ss_pred --------------------CCCCeEE-----------------------------------------------------
Q 012799 227 --------------------VSLRKCV----------------------------------------------------- 233 (456)
Q Consensus 227 --------------------~~~~~~~----------------------------------------------------- 233 (456)
.+++++.
T Consensus 247 ~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI 326 (775)
T KOG0319|consen 247 GGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEI 326 (775)
T ss_pred CCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhh
Confidence 2211110
Q ss_pred --------------------------------EEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCC----eEEEE
Q 012799 234 --------------------------------ICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG----KLIRE 276 (456)
Q Consensus 234 --------------------------------~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~----~~~~~ 276 (456)
..+.+|...|.++....+| .|++|+.|.++++|.++++ .++..
T Consensus 327 ~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~ 406 (775)
T KOG0319|consen 327 LDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQ 406 (775)
T ss_pred eeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhh
Confidence 1223677788888866677 9999999999999977443 24556
Q ss_pred eecCCcceEEEEecCcc--eeeeccccCCCCccCChHH-------------HHHHHHhhhhhc-cCCCCCEEEEEeCCCc
Q 012799 277 LKGHGHWVNSLALSTEY--ALRTGAFDHTGKQYSSPEE-------------MKKAALERYNKI-KGNAPERLVSGSDDFT 340 (456)
Q Consensus 277 ~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-~~~~~~~l~~~~~dg~ 340 (456)
..+|...|.+++++..+ .+.+++.|...+.|..+.. .....-...+.+ ..+....+++|+.|.+
T Consensus 407 ~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt 486 (775)
T KOG0319|consen 407 ANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT 486 (775)
T ss_pred hcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccc
Confidence 67899999999987654 4566666776666665541 011111112222 4567789999999999
Q ss_pred EEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCC
Q 012799 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPS 420 (456)
Q Consensus 341 i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~ 420 (456)
.++|++. .......+.+|...|.++.|+|..+.++|+|.|++|+||.+.+..+++++.||...|..+
T Consensus 487 aKiW~le-~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra------------ 553 (775)
T KOG0319|consen 487 AKIWDLE-QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRA------------ 553 (775)
T ss_pred eeeeccc-CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEee------------
Confidence 9999987 445677889999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 421 NFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 421 ~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.|-.+|+.|+|++.||-|+||
T Consensus 554 ---------------~F~~~~~qliS~~adGliKlW 574 (775)
T KOG0319|consen 554 ---------------SFIRNGKQLISAGADGLIKLW 574 (775)
T ss_pred ---------------eeeeCCcEEEeccCCCcEEEE
Confidence 889999999999999999999
No 27
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.7e-38 Score=281.14 Aligned_cols=295 Identities=27% Similarity=0.443 Sum_probs=249.8
Q ss_pred cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcc--eeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 012799 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQC 176 (456)
Q Consensus 99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v 176 (456)
...+++.||-+.|+++.|+.|.++|++|+.|.++++|.++..+. ...+.+|.+.|...-|..+...+++.+.||.+.+
T Consensus 136 vl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~ 215 (893)
T KOG0291|consen 136 VLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFV 215 (893)
T ss_pred eEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEE
Confidence 34578889999999999999999999999999999999987665 5667899999999999999999999999999999
Q ss_pred EeCCC-----------------------CCC-----c-----cccccCcccceEEEEecc--------------------
Q 012799 177 WDPQT-----------------------GKP-----S-----GNPLSGHKKWITGISWEP-------------------- 203 (456)
Q Consensus 177 wd~~~-----------------------~~~-----~-----~~~~~~~~~~v~~~~~~~-------------------- 203 (456)
|.... ++. . ...+......|++.+|++
T Consensus 216 W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP 295 (893)
T KOG0291|consen 216 WTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELP 295 (893)
T ss_pred EEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecC
Confidence 98761 110 0 000111224566666665
Q ss_pred -----------------cccCCCCCEEEEEeCC-CcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEE
Q 012799 204 -----------------VHLNAPCRRFVSASKD-GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIK 264 (456)
Q Consensus 204 -----------------~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~ 264 (456)
..++..|+.++.|+.. |.+-+|+..+...+....+|...+++++++||| .+++|+.||.|+
T Consensus 296 ~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVK 375 (893)
T KOG0291|consen 296 DFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVK 375 (893)
T ss_pred CceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEE
Confidence 1233356777776653 688888888888888888999999999999999 999999999999
Q ss_pred EEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEE
Q 012799 265 VWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW 344 (456)
Q Consensus 265 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 344 (456)
+||..++-++.++..|.+.|+.+.|+.. ++.+++++.||+|+.|
T Consensus 376 vWn~~SgfC~vTFteHts~Vt~v~f~~~------------------------------------g~~llssSLDGtVRAw 419 (893)
T KOG0291|consen 376 VWNTQSGFCFVTFTEHTSGVTAVQFTAR------------------------------------GNVLLSSSLDGTVRAW 419 (893)
T ss_pred EEeccCceEEEEeccCCCceEEEEEEec------------------------------------CCEEEEeecCCeEEee
Confidence 9999999999999999999999999987 5669999999999999
Q ss_pred ecCCCCCCccccccccccEeEEEECCCCCEEEEEECCC-cEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCce
Q 012799 345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK-SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY 423 (456)
Q Consensus 345 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~ 423 (456)
|+..............-...|++..|.|.++++|+.|. .|++|++++|+++..+.||.+||.++
T Consensus 420 DlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l--------------- 484 (893)
T KOG0291|consen 420 DLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGL--------------- 484 (893)
T ss_pred eecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceee---------------
Confidence 98776655544445555678999999999999999886 69999999999999999999999999
Q ss_pred eeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 424 ~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+|+|+|..|++||.|.+||+|
T Consensus 485 ------------~f~~~~~~LaS~SWDkTVRiW 505 (893)
T KOG0291|consen 485 ------------SFSPDGSLLASGSWDKTVRIW 505 (893)
T ss_pred ------------EEccccCeEEeccccceEEEE
Confidence 889999999999999999999
No 28
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.6e-38 Score=243.46 Aligned_cols=277 Identities=21% Similarity=0.295 Sum_probs=245.6
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 179 (456)
..+.|.+|.++|.++.|+-||+|.++++.|++|++|+...+..++++.+|...|..++.+.|+..+++|+.|..+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC--CeEEEEecCcCccEEEEEeCCCCeEEEE
Q 012799 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL--RKCVICLSGHTLAVTCVKWGGDGVIYTG 257 (456)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~l~~~ 257 (456)
++|+... .+.+|.+.|..++|+. +...+++|+.|.++++||.++ .++++.+......|.++..... .+++|
T Consensus 89 ~TGkv~R-r~rgH~aqVNtV~fNe-----esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h-eIvaG 161 (307)
T KOG0316|consen 89 NTGKVDR-RFRGHLAQVNTVRFNE-----ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH-EIVAG 161 (307)
T ss_pred ccCeeee-ecccccceeeEEEecC-----cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc-EEEee
Confidence 9999876 7899999999999988 788999999999999999975 4678888888889999988754 89999
Q ss_pred eCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC
Q 012799 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (456)
Q Consensus 258 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (456)
+.||+++.||++.|+..... .+.+|++++++++ ++..++++.
T Consensus 162 S~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d------------------------------------~nc~La~~l 203 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKD------------------------------------GNCSLASSL 203 (307)
T ss_pred ccCCcEEEEEeecceeehhh--cCCcceeEEecCC------------------------------------CCEEEEeec
Confidence 99999999999999876554 4568999999998 667999999
Q ss_pred CCcEEEEecCCCCCCccccccccccE--eEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEeccccc-EEEEEeeeee
Q 012799 338 DFTMFLWEPAVSKQPKTRMTGHQQLV--NHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP-VYQIRFELIY 414 (456)
Q Consensus 338 dg~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~i~~~~~~ 414 (456)
|+++++.| +...+.+....+|.+.- ..++++.....+++|++||.|++||+.+...+..+..+... +.++
T Consensus 204 ~stlrLlD-k~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl------ 276 (307)
T KOG0316|consen 204 DSTLRLLD-KETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDL------ 276 (307)
T ss_pred cceeeecc-cchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEee------
Confidence 99999999 55556777788887643 45677777889999999999999999999999999988877 7888
Q ss_pred eecCCCCceeeecccccccceeEecCCCeEEEeeC
Q 012799 415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449 (456)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~ 449 (456)
+++|.-..|+++..
T Consensus 277 ---------------------~~hp~~~~f~~A~~ 290 (307)
T KOG0316|consen 277 ---------------------SCHPTMDDFITATG 290 (307)
T ss_pred ---------------------ecccCccceeEecC
Confidence 77888776666654
No 29
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-37 Score=278.13 Aligned_cols=309 Identities=23% Similarity=0.406 Sum_probs=258.9
Q ss_pred eecccccccccCCcccEEEEEECCCCCeEEEEECC-CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCe
Q 012799 95 RPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGD-TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173 (456)
Q Consensus 95 ~~~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d-~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 173 (456)
.|...+++.|.-...+|..++|+..|++||.|+.. |.+.||+..+..-+...++|...+++++++|||+++|+|+.||.
T Consensus 294 lP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgK 373 (893)
T KOG0291|consen 294 LPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGK 373 (893)
T ss_pred cCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCc
Confidence 45667888888888899999999999999999754 89999999998888889999999999999999999999999999
Q ss_pred EEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCc-CccEEEEEeCCCC
Q 012799 174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH-TLAVTCVKWGGDG 252 (456)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~ 252 (456)
|+|||..++-+.. .+..|...|+.+.|+. .++.+++++-||+|+.||+...+..+++... .....|++.+|.|
T Consensus 374 VKvWn~~SgfC~v-TFteHts~Vt~v~f~~-----~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sG 447 (893)
T KOG0291|consen 374 VKVWNTQSGFCFV-TFTEHTSGVTAVQFTA-----RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSG 447 (893)
T ss_pred EEEEeccCceEEE-EeccCCCceEEEEEEe-----cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCC
Confidence 9999999998876 6888999999999998 8999999999999999999999998888643 4567899999999
Q ss_pred -eEEEEeCCC-cEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCC
Q 012799 253 -VIYTGSQDC-TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330 (456)
Q Consensus 253 -~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (456)
.+++|+.|. .|.+|++.+|+.+..+.+|.++|.+++|+|. +.
T Consensus 448 elV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~------------------------------------~~ 491 (893)
T KOG0291|consen 448 ELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD------------------------------------GS 491 (893)
T ss_pred CEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc------------------------------------cC
Confidence 666777776 5999999999999999999999999999998 56
Q ss_pred EEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410 (456)
Q Consensus 331 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 410 (456)
.|++++.|.+|++||+-........+ .+...+..++|+|+|+-||+++.||.|.+||++.+..+..+.+..+....=.
T Consensus 492 ~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~- 569 (893)
T KOG0291|consen 492 LLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRK- 569 (893)
T ss_pred eEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccc-
Confidence 69999999999999987665444433 4566799999999999999999999999999998887766654332111100
Q ss_pred eeeeeecCCCCcee--eecccccccceeEecCCCeEEEeeCCCceEE
Q 012799 411 ELIYCFRYPSNFYC--VVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 411 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i 455 (456)
...... ........+.+++|+||..+++||..+.|+|
T Consensus 570 --------~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCi 608 (893)
T KOG0291|consen 570 --------ETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICI 608 (893)
T ss_pred --------ccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEE
Confidence 000000 0112234555699999999999999999887
No 30
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=8.8e-37 Score=303.73 Aligned_cols=295 Identities=20% Similarity=0.377 Sum_probs=236.3
Q ss_pred cccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCC----c----ceeEEecCCCCEEEEEEcC-CCCEEEEEeCCCe
Q 012799 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ----T----PMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGE 173 (456)
Q Consensus 103 ~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~----~----~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~ 173 (456)
.+.+|.+.|.+++|+|+|++||+|+.|+.|+||+.... . +...+. +...+.+++|++ ++.+|++++.||+
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 45679999999999999999999999999999997542 1 222333 456799999987 5789999999999
Q ss_pred EEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC-CC
Q 012799 174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DG 252 (456)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~ 252 (456)
|++||+.+++... .+.+|...|.+++|+|. ++.+|++|+.||.|++||++++..+..+..+ ..+.++.|.+ ++
T Consensus 557 v~lWd~~~~~~~~-~~~~H~~~V~~l~~~p~----~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g 630 (793)
T PLN00181 557 VQVWDVARSQLVT-EMKEHEKRVWSIDYSSA----DPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESG 630 (793)
T ss_pred EEEEECCCCeEEE-EecCCCCCEEEEEEcCC----CCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCC
Confidence 9999999887654 56789999999999862 5789999999999999999999888888654 6789999954 56
Q ss_pred -eEEEEeCCCcEEEEECCCCe-EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCC
Q 012799 253 -VIYTGSQDCTIKVWETTQGK-LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330 (456)
Q Consensus 253 -~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (456)
.+++|+.||.|++||+++++ .+..+.+|...|.++.|.+ +.
T Consensus 631 ~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~-------------------------------------~~ 673 (793)
T PLN00181 631 RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD-------------------------------------SS 673 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeC-------------------------------------CC
Confidence 89999999999999998865 5677788999999999863 45
Q ss_pred EEEEEeCCCcEEEEecCCC-----CCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec-cccc
Q 012799 331 RLVSGSDDFTMFLWEPAVS-----KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-HVGP 404 (456)
Q Consensus 331 ~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~ 404 (456)
.+++++.|+.|++||++.. ..++..+.+|...+.+++|+|++.+|++|+.||.|++|+......+..+.. +...
T Consensus 674 ~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~ 753 (793)
T PLN00181 674 TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDP 753 (793)
T ss_pred EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCc
Confidence 6999999999999998743 235566789999999999999999999999999999999876654433321 1111
Q ss_pred EEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 405 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+..+ ...+....+..++|+|++.+|++|+.||.|+||
T Consensus 754 ~~~~---------------~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~ 790 (793)
T PLN00181 754 VSGL---------------EVDDASQFISSVCWRGQSSTLVAANSTGNIKIL 790 (793)
T ss_pred cccc---------------ccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEE
Confidence 1100 000111223334999999999999999999998
No 31
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2e-39 Score=264.87 Aligned_cols=267 Identities=30% Similarity=0.539 Sum_probs=235.1
Q ss_pred CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 012799 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (456)
Q Consensus 107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 186 (456)
..+.|+|+.+. ...+++|..|++|+|||.++-.++..+.||.+.|.|+.| +.+.|++|+.|.+|++||+++++++.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhh
Confidence 45789999985 557999999999999999999999999999999999999 66799999999999999999999987
Q ss_pred ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE---EEEecCcCccEEEEEeCCCCeEEEEeCCCcE
Q 012799 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC---VICLSGHTLAVTCVKWGGDGVIYTGSQDCTI 263 (456)
Q Consensus 187 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i 263 (456)
.+..|...|..+.|+. .++++++.|.++.+||+.+... ...+.+|...|+.+.|+.. ++++++.|.+|
T Consensus 272 -tlihHceaVLhlrf~n-------g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k-yIVsASgDRTi 342 (499)
T KOG0281|consen 272 -TLIHHCEAVLHLRFSN-------GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-YIVSASGDRTI 342 (499)
T ss_pred -HHhhhcceeEEEEEeC-------CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc-eEEEecCCceE
Confidence 6888999999999965 7999999999999999987653 3445789999999999866 99999999999
Q ss_pred EEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEE
Q 012799 264 KVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL 343 (456)
Q Consensus 264 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 343 (456)
++|++.+++.++++.+|...|.++.+. +.++++|+.|.+|++
T Consensus 343 kvW~~st~efvRtl~gHkRGIAClQYr--------------------------------------~rlvVSGSSDntIRl 384 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLNGHKRGIACLQYR--------------------------------------DRLVVSGSSDNTIRL 384 (499)
T ss_pred EEEeccceeeehhhhcccccceehhcc--------------------------------------CeEEEecCCCceEEE
Confidence 999999999999999999999998775 456999999999999
Q ss_pred EecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCe---------EEEEEecccccEEEEEeeeee
Q 012799 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK---------FVAVFRGHVGPVYQIRFELIY 414 (456)
Q Consensus 344 wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~i~~~~~~ 414 (456)
||+..+ .....+.||+.-|.++.| |.+.+++|+.||+|++||+..+. ++..+..|++.|..+
T Consensus 385 wdi~~G-~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrL------ 455 (499)
T KOG0281|consen 385 WDIECG-ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRL------ 455 (499)
T ss_pred Eecccc-HHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEE------
Confidence 997655 567779999999999999 56789999999999999998753 234556788889888
Q ss_pred eecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.| |...+++++.|.+|-||
T Consensus 456 ---------------------QF--D~fqIvsssHddtILiW 474 (499)
T KOG0281|consen 456 ---------------------QF--DEFQIISSSHDDTILIW 474 (499)
T ss_pred ---------------------ee--cceEEEeccCCCeEEEE
Confidence 44 55789999999999998
No 32
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.3e-39 Score=268.09 Aligned_cols=268 Identities=23% Similarity=0.407 Sum_probs=235.6
Q ss_pred cEEEEEEeccc----------eEEEeecccc--cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe
Q 012799 80 KVLSIVYQPQA----------VFRIRPVNRC--SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT 147 (456)
Q Consensus 80 ~~~~~~~~~~~----------~~~~~~~~~~--~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~ 147 (456)
.+..+.+.|.. .|.+|..... ...++.|..+|+++.|+++|.++++|+.+|.|++|+..-.. ++.+.
T Consensus 98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ 176 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQ 176 (464)
T ss_pred ceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHHhh
Confidence 45667777763 3444544322 24568999999999999999999999999999999976443 44444
Q ss_pred c-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEE
Q 012799 148 G-HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD 226 (456)
Q Consensus 148 ~-~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 226 (456)
. |...|++++|+|+...+++++.||+|+|||....+... .+.+|.-.|.++.|+| ....+++||.|..|++||
T Consensus 177 ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~-vL~GHgwdVksvdWHP-----~kgLiasgskDnlVKlWD 250 (464)
T KOG0284|consen 177 AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER-VLRGHGWDVKSVDWHP-----TKGLIASGSKDNLVKLWD 250 (464)
T ss_pred HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhh-eeccCCCCcceeccCC-----ccceeEEccCCceeEeec
Confidence 4 45999999999999999999999999999998877655 5799999999999999 778999999999999999
Q ss_pred CCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCC
Q 012799 227 VSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGK 305 (456)
Q Consensus 227 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 305 (456)
.+++.++.++.+|+..|..+.|.+++ +|++++.|..++++|+++.+.+..+++|...+.++.|+|-.
T Consensus 251 prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~------------ 318 (464)
T KOG0284|consen 251 PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLN------------ 318 (464)
T ss_pred CCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccc------------
Confidence 99999999999999999999999999 99999999999999999999999999999999999999973
Q ss_pred ccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEE
Q 012799 306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385 (456)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~ 385 (456)
...|.+|+.||.|..|.+.........-.+|...|.+++|+|=|.+|++|+.|.+++
T Consensus 319 -----------------------~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~r 375 (464)
T KOG0284|consen 319 -----------------------ESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVR 375 (464)
T ss_pred -----------------------ccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCccee
Confidence 556999999999999998766666666679999999999999999999999999999
Q ss_pred EEeC
Q 012799 386 LWNG 389 (456)
Q Consensus 386 iwd~ 389 (456)
+|.-
T Consensus 376 fw~r 379 (464)
T KOG0284|consen 376 FWTR 379 (464)
T ss_pred eecc
Confidence 9964
No 33
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-37 Score=270.18 Aligned_cols=267 Identities=24% Similarity=0.378 Sum_probs=246.8
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 180 (456)
.+++..|++.|.++.|+|...+++++-.+|.|.|||.++...+..+.-..-+|.+..|-+..+++++|+.|..|+||+.+
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence 34567799999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred CCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC-CeEEEEecCcCccEEEEEeCCCC--eEEEE
Q 012799 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDG--VIYTG 257 (456)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~--~l~~~ 257 (456)
+++.+. .+..|...|.+++.+| ...++++++.|-.|++||.+. ..+.+++.+|...|.+++|.|.. .++++
T Consensus 86 t~ekV~-~FeAH~DyIR~iavHP-----t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~ 159 (794)
T KOG0276|consen 86 TGEKVK-TFEAHSDYIRSIAVHP-----TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASA 159 (794)
T ss_pred cceeeE-EeeccccceeeeeecC-----CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeee
Confidence 999876 7889999999999999 668999999999999999975 57889999999999999999966 99999
Q ss_pred eCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC
Q 012799 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (456)
Q Consensus 258 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (456)
+.|++|++|.+.+..+..++.+|...|+++.+-+.+ +..++++|++
T Consensus 160 sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~g----------------------------------dkpylIsgaD 205 (794)
T KOG0276|consen 160 SLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGG----------------------------------DKPYLISGAD 205 (794)
T ss_pred eccccEEEEEcCCCCCceeeeccccCcceEEeccCC----------------------------------CcceEEecCC
Confidence 999999999999999999999999999999998753 3567999999
Q ss_pred CCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408 (456)
Q Consensus 338 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 408 (456)
|.++++||..+ +.+++.+.+|...|+.++|+|.-..+++|++||+++||+..+-++..++.-.-+.++++
T Consensus 206 D~tiKvWDyQt-k~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I 275 (794)
T KOG0276|consen 206 DLTIKVWDYQT-KSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCI 275 (794)
T ss_pred CceEEEeecch-HHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEE
Confidence 99999999654 56788899999999999999999999999999999999999988888887777888988
No 34
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.3e-37 Score=277.14 Aligned_cols=209 Identities=31% Similarity=0.527 Sum_probs=199.2
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 179 (456)
..++|.||.++|..+.|+|+.++|++++.|++||+|.+.+...+..+.+|..+|.++.|+|.|-|+||++.|++.++|..
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe
Q 012799 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS 258 (456)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~ 258 (456)
....+.+ ++.+|...|.|+.|+| +..++++||.|.+|++||+.+|..++.+.+|.++|++++|+|+| +|++|+
T Consensus 523 d~~~PlR-ifaghlsDV~cv~FHP-----Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ 596 (707)
T KOG0263|consen 523 DHNKPLR-IFAGHLSDVDCVSFHP-----NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGD 596 (707)
T ss_pred ccCCchh-hhcccccccceEEECC-----cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecc
Confidence 9887776 8899999999999999 88999999999999999999999999999999999999999999 999999
Q ss_pred CCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC
Q 012799 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (456)
Q Consensus 259 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 338 (456)
.||.|.+||+.+++.+..+.+|.+.|.++.|+.+ +..|++|+.|
T Consensus 597 ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~d------------------------------------g~vLasgg~D 640 (707)
T KOG0263|consen 597 EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRD------------------------------------GNVLASGGAD 640 (707)
T ss_pred cCCcEEEEEcCCCcchhhhhcccCceeEEEEecC------------------------------------CCEEEecCCC
Confidence 9999999999999999999999999999999998 5669999999
Q ss_pred CcEEEEecCCCC
Q 012799 339 FTMFLWEPAVSK 350 (456)
Q Consensus 339 g~i~iwd~~~~~ 350 (456)
.+|++||+....
T Consensus 641 nsV~lWD~~~~~ 652 (707)
T KOG0263|consen 641 NSVRLWDLTKVI 652 (707)
T ss_pred CeEEEEEchhhc
Confidence 999999976543
No 35
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.5e-36 Score=267.44 Aligned_cols=290 Identities=26% Similarity=0.381 Sum_probs=255.2
Q ss_pred ccccccccCCcccEEEEEEC-CCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 012799 98 NRCSATIAGHTEAVLSVAFS-PDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQC 176 (456)
Q Consensus 98 ~~~~~~l~~h~~~V~~~~~s-~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v 176 (456)
.+.++.+-|.++.|..++|- |+.++||.++..+.+++|+..+..+. .+.+|...|.++....+|.+|++|+.|.++++
T Consensus 313 l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svil 391 (775)
T KOG0319|consen 313 LTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVIL 391 (775)
T ss_pred cEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEE
Confidence 44567888999999999975 57789999999999999998776554 78899999999996668889999999999999
Q ss_pred EeCCCCCCc---cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE-----E----EEecCcCccEE
Q 012799 177 WDPQTGKPS---GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-----V----ICLSGHTLAVT 244 (456)
Q Consensus 177 wd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~----~~~~~~~~~v~ 244 (456)
|.++++... .....+|...|.+++++.. ....|+++|.|+++++|++...+. . .....|...|+
T Consensus 392 Wr~~~~~~~~~~~a~~~gH~~svgava~~~~----~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN 467 (775)
T KOG0319|consen 392 WRLNNNCSKSLCVAQANGHTNSVGAVAGSKL----GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDIN 467 (775)
T ss_pred EEecCCcchhhhhhhhcccccccceeeeccc----CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhccccc
Confidence 988554332 2246789999999999653 446899999999999999976221 1 12347999999
Q ss_pred EEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhh
Q 012799 245 CVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK 323 (456)
Q Consensus 245 ~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (456)
|++++|+. .+++|+.|.+.++|++...+....+.+|...+.++.|++.
T Consensus 468 ~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~------------------------------- 516 (775)
T KOG0319|consen 468 CVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKN------------------------------- 516 (775)
T ss_pred ceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccc-------------------------------
Confidence 99999988 9999999999999999999999999999999999999998
Q ss_pred ccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccc
Q 012799 324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403 (456)
Q Consensus 324 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 403 (456)
.+.+++++.|++|+||.+.+. .....+.||...|..+.|-.+|+.|++++.||-+++|++++++++.++..|.+
T Consensus 517 -----dq~laT~SgD~TvKIW~is~f-SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~D 590 (775)
T KOG0319|consen 517 -----DQLLATCSGDKTVKIWSISTF-SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHND 590 (775)
T ss_pred -----cceeEeccCCceEEEEEeccc-eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccc
Confidence 566999999999999997765 46677999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 404 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.|+++ +-++++.+++||+.||.|.+|
T Consensus 591 rvWaL---------------------------~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 591 RVWAL---------------------------SVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred eeEEE---------------------------eecCccceeEecCCCeEEEEe
Confidence 99999 779999999999999999998
No 36
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.9e-37 Score=241.12 Aligned_cols=280 Identities=24% Similarity=0.372 Sum_probs=248.2
Q ss_pred cccCCcccEEEEEECC---CCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799 103 TIAGHTEAVLSVAFSP---DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (456)
Q Consensus 103 ~l~~h~~~V~~~~~s~---~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 179 (456)
+..||+.+|..++||| +|-+|++++.|+.-.+-+-+++.-+-++.+|.+.|.....+.+....++++.|-+-++||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 4579999999999986 8889999999999999999999999999999999999999998889999999999999999
Q ss_pred CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe-EEEEecCcCccEEEEEeCCCC-eEEEE
Q 012799 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-CVICLSGHTLAVTCVKWGGDG-VIYTG 257 (456)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~-~l~~~ 257 (456)
-+|..+. ...|+.-|.+++|+. +.++|++|+.+..+++||++..+ +...+.+|.+.|..+.|.... .++++
T Consensus 89 ~tgdelh--sf~hkhivk~~af~~-----ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 89 VTGDELH--SFEHKHIVKAVAFSQ-----DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhhhhh--hhhhhheeeeEEecc-----cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence 9998875 556888899999998 88999999999999999998754 566788999999999998765 88888
Q ss_pred eCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC
Q 012799 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (456)
Q Consensus 258 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (456)
+.|++||+||.++++.++++. ...+|+++.+++++. +++-..
T Consensus 162 add~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~-------------------------------------ilTia~ 203 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGR-------------------------------------ILTIAY 203 (334)
T ss_pred ccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCC-------------------------------------EEEEec
Confidence 999999999999999999987 567799999998742 566677
Q ss_pred CCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEE-ecccccEEEEEeeeeeee
Q 012799 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF-RGHVGPVYQIRFELIYCF 416 (456)
Q Consensus 338 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~ 416 (456)
.+.|.+||...-..... . .-...|.+..++|+...+++|++|+.++.||..+|+.+..+ ++|.++|.++
T Consensus 204 gssV~Fwdaksf~~lKs-~-k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcV-------- 273 (334)
T KOG0278|consen 204 GSSVKFWDAKSFGLLKS-Y-KMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCV-------- 273 (334)
T ss_pred CceeEEeccccccceee-c-cCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEE--------
Confidence 78999999765443322 2 23455889999999999999999999999999999999986 8999999999
Q ss_pred cCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 417 RYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.|+|||...++||+||+||||
T Consensus 274 -------------------rFSPdGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 274 -------------------RFSPDGELYASGSEDGTIRLW 294 (334)
T ss_pred -------------------EECCCCceeeccCCCceEEEE
Confidence 889999999999999999999
No 37
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.9e-37 Score=251.34 Aligned_cols=282 Identities=27% Similarity=0.385 Sum_probs=249.8
Q ss_pred CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEE--------ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 012799 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC--------TGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (456)
Q Consensus 106 ~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 177 (456)
|....+.|..|+|||++|++|+.||.|.+||..+|+..+.+ --+..+|.|+.|+.|...+|+|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 55677889999999999999999999999999998765443 2478899999999999999999999999999
Q ss_pred eCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEE
Q 012799 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYT 256 (456)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~ 256 (456)
.+++|.++.+.-..|...|+++.|+. |+..+++++.|.++++--+.+|+++..+++|...|+...|.++| .+++
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSr-----D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iis 365 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSR-----DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIIS 365 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEcc-----CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEE
Confidence 99999999888889999999999999 89999999999999999999999999999999999999999999 9999
Q ss_pred EeCCCcEEEEECCCCeEEEEeec--CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799 257 GSQDCTIKVWETTQGKLIRELKG--HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (456)
Q Consensus 257 ~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (456)
++.||+|++|+..+.+++.+++. ...+|+++..-|. +...++.
T Consensus 366 aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PK-----------------------------------npeh~iV 410 (508)
T KOG0275|consen 366 ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPK-----------------------------------NPEHFIV 410 (508)
T ss_pred ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCC-----------------------------------CCceEEE
Confidence 99999999999999999998865 3446777777665 2566888
Q ss_pred EeCCCcEEEEecCCCCCCccccc---cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEee
Q 012799 335 GSDDFTMFLWEPAVSKQPKTRMT---GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411 (456)
Q Consensus 335 ~~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~ 411 (456)
+...+++++.++.. +.++.+. ...+...+.+.||.|.++.+.+.|+.++.|.+.+|++-..+.-|..-+..+
T Consensus 411 CNrsntv~imn~qG--QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl--- 485 (508)
T KOG0275|consen 411 CNRSNTVYIMNMQG--QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGL--- 485 (508)
T ss_pred EcCCCeEEEEeccc--eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccccccc---
Confidence 99999999988542 2333332 123456677899999999999999999999999999999999999999888
Q ss_pred eeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+-+|..+.||+-++||.+++|
T Consensus 486 ------------------------~HHPHqNllAsYsEDgllKLW 506 (508)
T KOG0275|consen 486 ------------------------THHPHQNLLASYSEDGLLKLW 506 (508)
T ss_pred ------------------------ccCcccchhhhhcccchhhhc
Confidence 779999999999999999999
No 38
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-36 Score=272.32 Aligned_cols=281 Identities=25% Similarity=0.424 Sum_probs=250.3
Q ss_pred ccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 012799 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (456)
Q Consensus 104 l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 183 (456)
+..-+..|..++|+|...+++++-..|.|++||.+-+..+..+..|.++|..++|+|++.++++|+.|-.|++|+.++.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 34457789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCc
Q 012799 184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCT 262 (456)
Q Consensus 184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~ 262 (456)
++. .+.+|...|..+.|++ .-..++++|.|.+|+||+..+++++..+.+|...|.|..|+|.. .+++++.|.+
T Consensus 85 clf-tL~GHlDYVRt~~FHh-----eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQT 158 (1202)
T KOG0292|consen 85 CLF-TLLGHLDYVRTVFFHH-----EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQT 158 (1202)
T ss_pred ehh-hhccccceeEEeeccC-----CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccce
Confidence 887 7899999999999999 66799999999999999999999999999999999999999965 9999999999
Q ss_pred EEEEECCCCe-----------------------------EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHH
Q 012799 263 IKVWETTQGK-----------------------------LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM 313 (456)
Q Consensus 263 i~iwd~~~~~-----------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (456)
|++||+..-+ ....+.+|...|+-.+|+|...
T Consensus 159 VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp------------------- 219 (1202)
T KOG0292|consen 159 VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP------------------- 219 (1202)
T ss_pred EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-------------------
Confidence 9999985210 1234567888888888888743
Q ss_pred HHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC-CCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCC
Q 012799 314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG 392 (456)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 392 (456)
.+++|++|..|++|.+...+ ..+....+|.+.|+++-|+|..+++++.|+|++|+|||+...
T Consensus 220 -----------------liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 220 -----------------LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred -----------------eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence 49999999999999976544 345567899999999999999999999999999999999999
Q ss_pred eEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCce
Q 012799 393 KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL 453 (456)
Q Consensus 393 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v 453 (456)
+.+++++...+.-+.+ +-+|..+++++|-+.|.+
T Consensus 283 t~v~tfrrendRFW~l---------------------------aahP~lNLfAAgHDsGm~ 316 (1202)
T KOG0292|consen 283 TSVQTFRRENDRFWIL---------------------------AAHPELNLFAAGHDSGMI 316 (1202)
T ss_pred cceeeeeccCCeEEEE---------------------------EecCCcceeeeecCCceE
Confidence 9999998888888888 778998888887766654
No 39
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-36 Score=239.29 Aligned_cols=281 Identities=20% Similarity=0.340 Sum_probs=238.6
Q ss_pred cccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 012799 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (456)
Q Consensus 103 ~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 182 (456)
.|+||..+++.+.++.+|.+|++++.|.+..||-..+|+.+-++.+|.+.|.|+..+.+.+++++|+.|.++++||+++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 47899999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred CCccccccCcccceEEEEecccccCCCCCEEEEEeC-----CCcEEEEECC-------CCeEEEEecCcCccEEEEEeCC
Q 012799 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-----DGDARIWDVS-------LRKCVICLSGHTLAVTCVKWGG 250 (456)
Q Consensus 183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~v~~~~~~~ 250 (456)
+.+. ......+|..+.|++ +|++++.... .+.|.++|++ ..++...+..+...++.+-|.|
T Consensus 85 k~la--~~k~~~~Vk~~~F~~-----~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~ 157 (327)
T KOG0643|consen 85 KQLA--TWKTNSPVKRVDFSF-----GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP 157 (327)
T ss_pred cEEE--EeecCCeeEEEeecc-----CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc
Confidence 9875 344567899999998 8888877654 4679999998 4566778888889999999999
Q ss_pred CC-eEEEEeCCCcEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCC
Q 012799 251 DG-VIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (456)
Q Consensus 251 ~~-~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (456)
-+ .+++|..||.|.+||+++| +.+.....|...|+.+.++++
T Consensus 158 l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d------------------------------------ 201 (327)
T KOG0643|consen 158 LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRD------------------------------------ 201 (327)
T ss_pred cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCC------------------------------------
Confidence 88 9999999999999999998 455666789999999999998
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCC--------------cEEEEeCCCCeE
Q 012799 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK--------------SIKLWNGTTGKF 394 (456)
Q Consensus 329 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg--------------~i~iwd~~~~~~ 394 (456)
..++++++.|.+-++||.++-.... ...-..+|++.+++|--..++.|+... ..++|++-..+.
T Consensus 202 ~T~FiT~s~Dttakl~D~~tl~v~K--ty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEE 279 (327)
T KOG0643|consen 202 RTYFITGSKDTTAKLVDVRTLEVLK--TYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEE 279 (327)
T ss_pred cceEEecccCccceeeeccceeeEE--EeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHH
Confidence 5669999999999999976544322 233467899999999777766654322 123333333445
Q ss_pred EEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799 395 VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 395 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i 455 (456)
+..+++|-+||+++ +|+|+|+..++|++||.||+
T Consensus 280 igrvkGHFGPINsv---------------------------AfhPdGksYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 280 IGRVKGHFGPINSV---------------------------AFHPDGKSYSSGGEDGYVRL 313 (327)
T ss_pred hccccccccCccee---------------------------EECCCCcccccCCCCceEEE
Confidence 67789999999999 99999999999999999997
No 40
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=8.5e-37 Score=249.57 Aligned_cols=267 Identities=28% Similarity=0.524 Sum_probs=232.3
Q ss_pred CcccEEEEEEeccc--------eEEEeecc--cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEE
Q 012799 77 SVEKVLSIVYQPQA--------VFRIRPVN--RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC 146 (456)
Q Consensus 77 ~~~~~~~~~~~~~~--------~~~~~~~~--~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~ 146 (456)
....+..++|+... ..++|+.+ .|.+.|.||++.|.|+.|. .+.+++|+.|.+|+|||+++++++.++
T Consensus 196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tl 273 (499)
T KOG0281|consen 196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTL 273 (499)
T ss_pred cCCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHH
Confidence 45667888887543 45677654 5889999999999999995 569999999999999999999999999
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC--ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEE
Q 012799 147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP--SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224 (456)
Q Consensus 147 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i 224 (456)
.+|...|..+.|+ ..++++++.|.++.+||+..... ....+.+|...|..+.|+. +++++++.|.+|++
T Consensus 274 ihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~-------kyIVsASgDRTikv 344 (499)
T KOG0281|consen 274 IHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD-------KYIVSASGDRTIKV 344 (499)
T ss_pred hhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc-------ceEEEecCCceEEE
Confidence 9999999999996 45999999999999999986543 3346789999999999954 79999999999999
Q ss_pred EECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCC
Q 012799 225 WDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTG 304 (456)
Q Consensus 225 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 304 (456)
|++.+.++++++.+|...|.|+.+... .+++|+.|.+|++||+..|.+++.+++|..-|.++.|...
T Consensus 345 W~~st~efvRtl~gHkRGIAClQYr~r-lvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~k------------ 411 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQYRDR-LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK------------ 411 (499)
T ss_pred EeccceeeehhhhcccccceehhccCe-EEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCc------------
Confidence 999999999999999999999988633 8899999999999999999999999999999999999754
Q ss_pred CccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC--------ccccccccccEeEEEECCCCCEEE
Q 012799 305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP--------KTRMTGHQQLVNHVYFSPDGQWVA 376 (456)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--------~~~~~~~~~~v~~~~~sp~~~~l~ 376 (456)
.+++|+.||+|++||+.....+ +..+..|.+.|..+.| |...++
T Consensus 412 --------------------------rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIv 463 (499)
T KOG0281|consen 412 --------------------------RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQII 463 (499)
T ss_pred --------------------------eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEE
Confidence 5999999999999998765543 3445678899999999 567799
Q ss_pred EEECCCcEEEEeCCCCeEE
Q 012799 377 SASFDKSIKLWNGTTGKFV 395 (456)
Q Consensus 377 s~~~dg~i~iwd~~~~~~~ 395 (456)
+++.|.+|.|||..++-.-
T Consensus 464 sssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 464 SSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred eccCCCeEEEEEcCCCCcc
Confidence 9999999999999876543
No 41
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.1e-36 Score=246.36 Aligned_cols=268 Identities=26% Similarity=0.569 Sum_probs=239.1
Q ss_pred ccEEEEEEeccc----------eEEEee--cccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC-CcceeE
Q 012799 79 EKVLSIVYQPQA----------VFRIRP--VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-QTPMFK 145 (456)
Q Consensus 79 ~~~~~~~~~~~~----------~~~~~~--~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~-~~~~~~ 145 (456)
.++..+.|.|.. .+++++ .+.+.+.|+||.+.|..++|+..|+++|+++.|-.+++||.++ .+++..
T Consensus 109 ~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks 188 (406)
T KOG0295|consen 109 SSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKS 188 (406)
T ss_pred cceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHH
Confidence 345556666644 333443 3567899999999999999999999999999998899999987 567788
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEE
Q 012799 146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW 225 (456)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 225 (456)
+.+|+..|.++.|-|.|.+|+++++|.+|+.|++.+|..+. .+.+|...|..++.+. ||..+++++.|.++++|
T Consensus 189 ~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~-t~~~h~ewvr~v~v~~-----DGti~As~s~dqtl~vW 262 (406)
T KOG0295|consen 189 LIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVK-TFPGHSEWVRMVRVNQ-----DGTIIASCSNDQTLRVW 262 (406)
T ss_pred hcCcccceeeEEEEecCCeeeecccccceeEEecccceeEE-eccCchHhEEEEEecC-----CeeEEEecCCCceEEEE
Confidence 88999999999999999999999999999999999999887 6889999999998877 99999999999999999
Q ss_pred ECCCCeEEEEecCcCccEEEEEeCCC--------------C--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEe
Q 012799 226 DVSLRKCVICLSGHTLAVTCVKWGGD--------------G--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLAL 289 (456)
Q Consensus 226 d~~~~~~~~~~~~~~~~v~~~~~~~~--------------~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 289 (456)
-+.++++...+..|..+|.|++|-|. + .+.+++.|++|++||+.++.++.++.+|..+|..++|
T Consensus 263 ~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af 342 (406)
T KOG0295|consen 263 VVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAF 342 (406)
T ss_pred EeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEE
Confidence 99999999999999999999999541 2 7889999999999999999999999999999999999
Q ss_pred cCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEEC
Q 012799 290 STEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS 369 (456)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s 369 (456)
+|. |++|+++.+|+++++||+.+.. ....+..|+.-++++.|+
T Consensus 343 ~p~------------------------------------Gkyi~ScaDDktlrvwdl~~~~-cmk~~~ah~hfvt~lDfh 385 (406)
T KOG0295|consen 343 SPG------------------------------------GKYILSCADDKTLRVWDLKNLQ-CMKTLEAHEHFVTSLDFH 385 (406)
T ss_pred cCC------------------------------------CeEEEEEecCCcEEEEEeccce-eeeccCCCcceeEEEecC
Confidence 998 6779999999999999987655 455567999999999999
Q ss_pred CCCCEEEEEECCCcEEEEeC
Q 012799 370 PDGQWVASASFDKSIKLWNG 389 (456)
Q Consensus 370 p~~~~l~s~~~dg~i~iwd~ 389 (456)
.+..++++|+-|..+++|..
T Consensus 386 ~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 386 KTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCceEEeccccceeeeeec
Confidence 99999999999999999974
No 42
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.9e-36 Score=233.12 Aligned_cols=279 Identities=23% Similarity=0.397 Sum_probs=234.0
Q ss_pred EEEEECCC-CCeEEEE-------ECCCcEEEEeCCCCcceeEEe--cCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Q 012799 112 LSVAFSPD-GRQLASG-------SGDTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQ 180 (456)
Q Consensus 112 ~~~~~s~~-~~~l~~~-------~~d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~ 180 (456)
.++.|||- .++||.+ ...|++.|-++...+-+..+. .-.+.+..++|++ ..+.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 56888882 2334333 246889999986555444443 3567899999998 46788899999999999976
Q ss_pred CCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--eEEEEe
Q 012799 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGS 258 (456)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~ 258 (456)
........++.|..+|.++.|.+. ....+++++.|++|++|+...++.+.++.+|...|...+|+|.. .+++++
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~----~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~S 167 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTV----RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASAS 167 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccc----cceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEcc
Confidence 544444468899999999999985 56788899999999999999999999999999999999999954 999999
Q ss_pred CCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC
Q 012799 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (456)
Q Consensus 259 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 338 (456)
.||++++||++.......+..|...+.+..|+.- +...+++|+.|
T Consensus 168 gd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky-----------------------------------~~~vl~Tg~vd 212 (311)
T KOG0277|consen 168 GDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKY-----------------------------------NHNVLATGGVD 212 (311)
T ss_pred CCceEEEEEecCCCceeEEEeccceeEeeccccc-----------------------------------CCcEEEecCCC
Confidence 9999999999876555558889999999999865 35679999999
Q ss_pred CcEEEEecCCCCCCccccccccccEeEEEECCC-CCEEEEEECCCcEEEEeCCCC-eEEEEEecccccEEEEEeeeeeee
Q 012799 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQIRFELIYCF 416 (456)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~ 416 (456)
+.|+.||++.-+.++..+.+|.-.|+.+.|||. ..+||+++.|-+++|||...+ ..+.+...|+..+..+
T Consensus 213 ~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~-------- 284 (311)
T KOG0277|consen 213 NLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGL-------- 284 (311)
T ss_pred ceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecc--------
Confidence 999999999999999999999999999999995 567999999999999998854 4566777899999999
Q ss_pred cCCCCceeeecccccccceeEec-CCCeEEEeeCCCceEEC
Q 012799 417 RYPSNFYCVVDMSCCMSLYSWSA-DSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~s~s~Dg~v~iW 456 (456)
.||+ ++.++|+++.|+.++||
T Consensus 285 -------------------Dws~~~~~~vAs~gWDe~l~Vw 306 (311)
T KOG0277|consen 285 -------------------DWSLFDPGQVASTGWDELLYVW 306 (311)
T ss_pred -------------------ccccccCceeeecccccceeee
Confidence 6665 56799999999999999
No 43
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.3e-35 Score=262.86 Aligned_cols=282 Identities=27% Similarity=0.415 Sum_probs=252.1
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 012799 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (456)
Q Consensus 102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 181 (456)
-++.||...|.++++|.+...+++|+ .+.+++|+..+.+++.++... .+.+..|.|.++++++|...|.+.+||+.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 46789999999999999988888875 558999999999999998643 899999999999999999999999999998
Q ss_pred CCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC-----C--eEEEEec-----CcCccEEEEEeC
Q 012799 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-----R--KCVICLS-----GHTLAVTCVKWG 249 (456)
Q Consensus 182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~--~~~~~~~-----~~~~~v~~~~~~ 249 (456)
...+. ....|.+.|++++..| ++..+++||.|.+|++||..- + +....+. .-...|.|+.++
T Consensus 444 ~~l~E-ti~AHdgaIWsi~~~p-----D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S 517 (888)
T KOG0306|consen 444 ASLVE-TIRAHDGAIWSISLSP-----DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS 517 (888)
T ss_pred hhhhh-hhhccccceeeeeecC-----CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc
Confidence 88765 5669999999999999 999999999999999999741 1 1111111 235689999999
Q ss_pred CCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCC
Q 012799 250 GDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (456)
Q Consensus 250 ~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (456)
||+ +|+++--|+++++|-+.+-+...++-+|.-||.++.++|+
T Consensus 518 pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~D------------------------------------ 561 (888)
T KOG0306|consen 518 PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPD------------------------------------ 561 (888)
T ss_pred CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCC------------------------------------
Confidence 999 8888889999999999999999999999999999999998
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408 (456)
Q Consensus 329 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 408 (456)
+..+++|+.|..|++|-+.-+. +...+.+|++.|.++.|-|...++.++|.||.|+-||-...+.++.+.+|...|+++
T Consensus 562 SklivTgSADKnVKiWGLdFGD-CHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cL 640 (888)
T KOG0306|consen 562 SKLIVTGSADKNVKIWGLDFGD-CHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCL 640 (888)
T ss_pred cCeEEeccCCCceEEeccccch-hhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeee
Confidence 5569999999999999876554 556678999999999999999999999999999999999999999999999999999
Q ss_pred EeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+.+|+|.+++++|.|.+||+|
T Consensus 641 ---------------------------av~~~G~~vvs~shD~sIRlw 661 (888)
T KOG0306|consen 641 ---------------------------AVSPNGSFVVSSSHDKSIRLW 661 (888)
T ss_pred ---------------------------EEcCCCCeEEeccCCceeEee
Confidence 889999999999999999999
No 44
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.1e-36 Score=248.12 Aligned_cols=243 Identities=27% Similarity=0.467 Sum_probs=221.6
Q ss_pred ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCc
Q 012799 142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221 (456)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~ 221 (456)
....+.+|.+.|.|+++.|.+.++++|+.|++|+|||+.+|+... .+.+|...|..+++++ --.++++++.|+.
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl-tltGhi~~vr~vavS~-----rHpYlFs~gedk~ 216 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL-TLTGHIETVRGVAVSK-----RHPYLFSAGEDKQ 216 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE-eecchhheeeeeeecc-----cCceEEEecCCCe
Confidence 344567999999999999999999999999999999999998765 7889999999999998 4579999999999
Q ss_pred EEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccc
Q 012799 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF 300 (456)
Q Consensus 222 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 300 (456)
|+.||++..+.++.+.+|-..|.|++.+|.- .|++|+.|.++++||+++...+..+.+|..+|.++.+.|.
T Consensus 217 VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~-------- 288 (460)
T KOG0285|consen 217 VKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT-------- 288 (460)
T ss_pred eEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecC--------
Confidence 9999999999999999999999999999976 9999999999999999999999999999999999998876
Q ss_pred cCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEEC
Q 012799 301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380 (456)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~ 380 (456)
...+++|+.|++|++||++.++.. ..+..|...|.+++.+|....+|+++.
T Consensus 289 ----------------------------dpqvit~S~D~tvrlWDl~agkt~-~tlt~hkksvral~lhP~e~~fASas~ 339 (460)
T KOG0285|consen 289 ----------------------------DPQVITGSHDSTVRLWDLRAGKTM-ITLTHHKKSVRALCLHPKENLFASASP 339 (460)
T ss_pred ----------------------------CCceEEecCCceEEEeeeccCcee-EeeecccceeeEEecCCchhhhhccCC
Confidence 334999999999999998877654 457789999999999999999999998
Q ss_pred CCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 381 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
|. |+-|++..|..++.+.+|..-|+++ +...| .++++|++.|.+.+|
T Consensus 340 dn-ik~w~~p~g~f~~nlsgh~~iintl---------------------------~~nsD-~v~~~G~dng~~~fw 386 (460)
T KOG0285|consen 340 DN-IKQWKLPEGEFLQNLSGHNAIINTL---------------------------SVNSD-GVLVSGGDNGSIMFW 386 (460)
T ss_pred cc-ceeccCCccchhhccccccceeeee---------------------------eeccC-ceEEEcCCceEEEEE
Confidence 86 8999999999999999999999999 55655 488999999999987
No 45
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.9e-36 Score=230.82 Aligned_cols=243 Identities=21% Similarity=0.375 Sum_probs=217.3
Q ss_pred ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCc
Q 012799 142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221 (456)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~ 221 (456)
....+..+.++|..+.|+-+|+|.++++.|.+|++|+...+..+. .+.+|..+|..++.+. +...|++++.|..
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik-tYsghG~EVlD~~~s~-----Dnskf~s~GgDk~ 82 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK-TYSGHGHEVLDAALSS-----DNSKFASCGGDKA 82 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee-eecCCCceeeeccccc-----cccccccCCCCce
Confidence 355677899999999999999999999999999999999998876 7899999999998877 8889999999999
Q ss_pred EEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCC--eEEEEeecCCcceEEEEecCcceeeec
Q 012799 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG--KLIRELKGHGHWVNSLALSTEYALRTG 298 (456)
Q Consensus 222 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~ 298 (456)
+.+||+++++.++.+.+|.+.|+.+.|+.+. .+++|+.|.++++||.++. ++++.+......|.++.+...
T Consensus 83 v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h------ 156 (307)
T KOG0316|consen 83 VQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH------ 156 (307)
T ss_pred EEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc------
Confidence 9999999999999999999999999999988 9999999999999999874 678888888888999888754
Q ss_pred cccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEE
Q 012799 299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA 378 (456)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~ 378 (456)
.+++|+.||+++.||++.+....- .. ..+|++++|++|++....+
T Consensus 157 --------------------------------eIvaGS~DGtvRtydiR~G~l~sD-y~--g~pit~vs~s~d~nc~La~ 201 (307)
T KOG0316|consen 157 --------------------------------EIVAGSVDGTVRTYDIRKGTLSSD-YF--GHPITSVSFSKDGNCSLAS 201 (307)
T ss_pred --------------------------------EEEeeccCCcEEEEEeecceeehh-hc--CCcceeEEecCCCCEEEEe
Confidence 499999999999999988764433 23 3569999999999999999
Q ss_pred ECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 379 SFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 379 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+.|+++++.|-.+|++++.+++|...-+.+.- +++.....+++||+||.|++|
T Consensus 202 ~l~stlrLlDk~tGklL~sYkGhkn~eykldc-------------------------~l~qsdthV~sgSEDG~Vy~w 254 (307)
T KOG0316|consen 202 SLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC-------------------------CLNQSDTHVFSGSEDGKVYFW 254 (307)
T ss_pred eccceeeecccchhHHHHHhcccccceeeeee-------------------------eecccceeEEeccCCceEEEE
Confidence 99999999999999999999999987665522 667777899999999999999
No 46
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.2e-37 Score=252.03 Aligned_cols=280 Identities=21% Similarity=0.367 Sum_probs=236.0
Q ss_pred cccccCCcccEEEEEECCCC-CeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799 101 SATIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 179 (456)
+..|.||.+.|.|++=+|.. ..+|+|+.||.|++||+....+..++..|.+.|..|++.. ..+++++.|.+|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 45678999999999999987 7899999999999999999999999999999999999976 67899999999999998
Q ss_pred CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--eEEEE
Q 012799 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTG 257 (456)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~ 257 (456)
+.. +.. .+ .....+..+.-+. .++.++++|. .|.|||.....++..+.-....|.++.|+|.. .|+++
T Consensus 137 ~~~-p~~-ti-lg~s~~~gIdh~~-----~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 137 DGP-PLH-TI-LGKSVYLGIDHHR-----KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASC 206 (433)
T ss_pred cCC-cce-ee-ecccccccccccc-----ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeee
Confidence 652 222 11 1233444554433 5567888886 49999999999999988778889999999966 78888
Q ss_pred eCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC
Q 012799 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (456)
Q Consensus 258 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (456)
+.|+.|.+||++++.+++.+. ..-.-+.++|+|. ...+++|++
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPe------------------------------------afnF~~a~E 249 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPE------------------------------------AFNFVAANE 249 (433)
T ss_pred ccCCceEEEecccCCccceee-eeccccceecCcc------------------------------------ccceeeccc
Confidence 899999999999999887765 3345678999995 334899999
Q ss_pred CCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEe-cccccEEEEEeeeeeee
Q 012799 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR-GHVGPVYQIRFELIYCF 416 (456)
Q Consensus 338 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~ 416 (456)
|..++.||++.-..++....+|.+.|.++.|||.|+-+++||.|.+|+||..+.+.....+. .-...|.++
T Consensus 250 D~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~V-------- 321 (433)
T KOG0268|consen 250 DHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCV-------- 321 (433)
T ss_pred cccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEE--------
Confidence 99999999999999999999999999999999999999999999999999998775543331 112356777
Q ss_pred cCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 417 RYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.||.|.+++++||+|+.||+|
T Consensus 322 -------------------k~S~Dskyi~SGSdd~nvRlW 342 (433)
T KOG0268|consen 322 -------------------KYSMDSKYIISGSDDGNVRLW 342 (433)
T ss_pred -------------------EEeccccEEEecCCCcceeee
Confidence 999999999999999999999
No 47
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.6e-35 Score=237.55 Aligned_cols=247 Identities=22% Similarity=0.414 Sum_probs=214.4
Q ss_pred ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCc
Q 012799 142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221 (456)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~ 221 (456)
++..+.+|++.|+.+.|+|+|.+||+|+.|..|.+|+......-...+.+|.+.|..+.|.+ +++.+++++.|.+
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-----d~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-----DGSHILSCGTDKT 113 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-----CCCEEEEecCCce
Confidence 44567799999999999999999999999999999997655444446789999999999999 9999999999999
Q ss_pred EEEEECCCCeEEEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeecc
Q 012799 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299 (456)
Q Consensus 222 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 299 (456)
++.||++++++++..++|..-|+.+.....| ++.+++.||++++||+++...++++. ....++++.|...
T Consensus 114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~------- 185 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDT------- 185 (338)
T ss_pred EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEeccc-------
Confidence 9999999999999999999999999966666 77889999999999999988888775 4567888998876
Q ss_pred ccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEE
Q 012799 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379 (456)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 379 (456)
++.+++|+-|+.|++||++... ....+.+|.++|+.+..+|+|.++.+-+
T Consensus 186 -----------------------------s~qv~sggIdn~ikvWd~r~~d-~~~~lsGh~DtIt~lsls~~gs~llsns 235 (338)
T KOG0265|consen 186 -----------------------------SDQVISGGIDNDIKVWDLRKND-GLYTLSGHADTITGLSLSRYGSFLLSNS 235 (338)
T ss_pred -----------------------------ccceeeccccCceeeeccccCc-ceEEeecccCceeeEEeccCCCcccccc
Confidence 5569999999999999987654 5667899999999999999999999999
Q ss_pred CCCcEEEEeCCC----CeEEEEEecccc--cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCce
Q 012799 380 FDKSIKLWNGTT----GKFVAVFRGHVG--PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL 453 (456)
Q Consensus 380 ~dg~i~iwd~~~----~~~~~~~~~~~~--~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v 453 (456)
.|.++++||++. .+++..+.+|.. .++-+. .+|+|+++.+.+|+.|..+
T Consensus 236 Md~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~-------------------------cswsp~~~~i~ags~dr~v 290 (338)
T KOG0265|consen 236 MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK-------------------------CSWSPNGTKITAGSADRFV 290 (338)
T ss_pred ccceEEEEEecccCCCCceEEEeecchhhhhhhcce-------------------------eeccCCCCccccccccceE
Confidence 999999999875 345777776543 222221 1899999999999999999
Q ss_pred EEC
Q 012799 454 KVT 456 (456)
Q Consensus 454 ~iW 456 (456)
++|
T Consensus 291 yvw 293 (338)
T KOG0265|consen 291 YVW 293 (338)
T ss_pred EEe
Confidence 999
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-35 Score=255.54 Aligned_cols=278 Identities=20% Similarity=0.339 Sum_probs=241.1
Q ss_pred CcccEEEEEEeccceEE----------Eee--cccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCccee
Q 012799 77 SVEKVLSIVYQPQAVFR----------IRP--VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF 144 (456)
Q Consensus 77 ~~~~~~~~~~~~~~~~~----------~~~--~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~ 144 (456)
+++++..+.++|.+.+- +|. ....++.+.--..+|.+..|-+..+++++|+.|..|+||+.++++.+.
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~ 91 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK 91 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeE
Confidence 56777777887766442 332 234567777888999999999999999999999999999999999999
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEE
Q 012799 145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224 (456)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i 224 (456)
.+..|.+.|.|++.+|...++++++.|-+|++||++.+-...+.+.+|...|.+++|.|. |.+.|++++-|++|++
T Consensus 92 ~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPk----D~ntFaS~sLDrTVKV 167 (794)
T KOG0276|consen 92 TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPK----DPNTFASASLDRTVKV 167 (794)
T ss_pred EeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCC----CccceeeeeccccEEE
Confidence 999999999999999999999999999999999999887777789999999999999995 6789999999999999
Q ss_pred EECCCCeEEEEecCcCccEEEEEeCCCC---eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeecccc
Q 012799 225 WDVSLRKCVICLSGHTLAVTCVKWGGDG---VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301 (456)
Q Consensus 225 wd~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 301 (456)
|.+.+..+..++.+|...|+|+.+-+.| +|++|+.|.++++||..+..+++++.+|...|..+.|+|...+
T Consensus 168 Wslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpi------ 241 (794)
T KOG0276|consen 168 WSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPI------ 241 (794)
T ss_pred EEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcE------
Confidence 9999999999999999999999999877 9999999999999999999999999999999999999998554
Q ss_pred CCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECC
Q 012799 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381 (456)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d 381 (456)
+++|++||+++||+..+- .....+.-.-..+.|++-.+.++.++.|...
T Consensus 242 ------------------------------iisgsEDGTvriWhs~Ty-~lE~tLn~gleRvW~I~~~k~~~~i~vG~De 290 (794)
T KOG0276|consen 242 ------------------------------IISGSEDGTVRIWNSKTY-KLEKTLNYGLERVWCIAAHKGDGKIAVGFDE 290 (794)
T ss_pred ------------------------------EEEecCCccEEEecCcce-ehhhhhhcCCceEEEEeecCCCCeEEEeccC
Confidence 999999999999995443 3334444456779999999988889999877
Q ss_pred CcEEEEeCCCCeEEE
Q 012799 382 KSIKLWNGTTGKFVA 396 (456)
Q Consensus 382 g~i~iwd~~~~~~~~ 396 (456)
|.|.+ .+...++..
T Consensus 291 g~i~v-~lgreeP~v 304 (794)
T KOG0276|consen 291 GSVTV-KLGREEPAV 304 (794)
T ss_pred CcEEE-EccCCCCce
Confidence 76554 444444433
No 49
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.7e-34 Score=225.37 Aligned_cols=267 Identities=27% Similarity=0.446 Sum_probs=216.4
Q ss_pred CcccEEEEEEeccc-----------eEEEeecc-----cccccc-cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC
Q 012799 77 SVEKVLSIVYQPQA-----------VFRIRPVN-----RCSATI-AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT 139 (456)
Q Consensus 77 ~~~~~~~~~~~~~~-----------~~~~~~~~-----~~~~~l-~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~ 139 (456)
+.+++..+.++|.. .++++... .|...| .+|+..|++++|+|.|++||+|+.|.++.||.-..
T Consensus 13 h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~ 92 (312)
T KOG0645|consen 13 HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKED 92 (312)
T ss_pred CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCC
Confidence 44456666666652 34455443 244444 47999999999999999999999999999998654
Q ss_pred C--cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC--ccccccCcccceEEEEecccccCCCCCEEEE
Q 012799 140 Q--TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP--SGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215 (456)
Q Consensus 140 ~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~ 215 (456)
+ +++..+.||...|.|++|+++|++||++++|..|.||.+..+.. ....+..|...|..+.|+| ....|++
T Consensus 93 ~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-----t~dlL~S 167 (312)
T KOG0645|consen 93 GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-----TEDLLFS 167 (312)
T ss_pred CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-----CcceeEE
Confidence 3 67888999999999999999999999999999999999985543 2236889999999999999 7789999
Q ss_pred EeCCCcEEEEECC---CCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecC
Q 012799 216 ASKDGDARIWDVS---LRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALST 291 (456)
Q Consensus 216 ~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~ 291 (456)
++.|.+|++|+-. ...+..++.+|...|.+++|++.| ++++++.|++++||-..+.-. ..|...+..++|.
T Consensus 168 ~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~- 242 (312)
T KOG0645|consen 168 CSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD- 242 (312)
T ss_pred eccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEeeeec-
Confidence 9999999999866 457899999999999999999999 999999999999998653211 1256778888887
Q ss_pred cceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCC-CCC-----ccccccccccEeE
Q 012799 292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS-KQP-----KTRMTGHQQLVNH 365 (456)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~-----~~~~~~~~~~v~~ 365 (456)
+ ..|++++.|+.|++|.-... ..+ ......|...|++
T Consensus 243 ~-------------------------------------~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNs 285 (312)
T KOG0645|consen 243 N-------------------------------------GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNS 285 (312)
T ss_pred c-------------------------------------cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccce
Confidence 2 23999999999999974422 111 2234578889999
Q ss_pred EEECCC-CCEEEEEECCCcEEEEeCC
Q 012799 366 VYFSPD-GQWVASASFDKSIKLWNGT 390 (456)
Q Consensus 366 ~~~sp~-~~~l~s~~~dg~i~iwd~~ 390 (456)
++|+|. .++|++|+.||.|++|.+.
T Consensus 286 V~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 286 VQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EEEcCCCCCceeecCCCceEEEEEec
Confidence 999994 7789999999999999864
No 50
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=7.8e-36 Score=249.13 Aligned_cols=285 Identities=25% Similarity=0.392 Sum_probs=244.7
Q ss_pred ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc--ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 012799 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ 175 (456)
Q Consensus 98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 175 (456)
.++...+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..+.|+.+.|.++++++++++.|+.++
T Consensus 165 S~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 165 SRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR 244 (459)
T ss_pred hhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCcee
Confidence 45566788999999999999998999999999999999987666 6677888899999999999999999999999999
Q ss_pred EEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEE
Q 012799 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY 255 (456)
Q Consensus 176 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 255 (456)
+|++...+... .+.+|...|+++.|.. ....+++|+.|.+|++||+....|..++. ....+.++..++ ..++
T Consensus 245 ~Wnvd~~r~~~-TLsGHtdkVt~ak~~~-----~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~~-~~~~ 316 (459)
T KOG0288|consen 245 LWNVDSLRLRH-TLSGHTDKVTAAKFKL-----SHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCSI-SDVI 316 (459)
T ss_pred eeeccchhhhh-hhcccccceeeehhhc-----cccceeeccccchhhhhhhhhhheecccc-ccccccceEecc-eeee
Confidence 99999988766 6888999999999987 44559999999999999999988877764 234455565552 2788
Q ss_pred EEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEE
Q 012799 256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (456)
Q Consensus 256 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (456)
+|..|+.|++||.++..+......++ .|+++..+++ +..++++
T Consensus 317 SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~------------------------------------g~~lLss 359 (459)
T KOG0288|consen 317 SGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMD------------------------------------GLELLSS 359 (459)
T ss_pred ecccccceEEEeccCCceeeEeecCc-ceeeEeeccC------------------------------------CeEEeee
Confidence 99999999999999999999998665 8999999988 5568888
Q ss_pred eCCCcEEEEecCCCCCCcc-----ccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEeccccc--EEEE
Q 012799 336 SDDFTMFLWEPAVSKQPKT-----RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP--VYQI 408 (456)
Q Consensus 336 ~~dg~i~iwd~~~~~~~~~-----~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~i 408 (456)
+.|.++.+.|+++...... ...+|+ .+.+.|||++.|+++||.||.|+||++.++++...+...... |+++
T Consensus 360 sRDdtl~viDlRt~eI~~~~sA~g~k~asD--wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~ 437 (459)
T KOG0288|consen 360 SRDDTLKVIDLRTKEIRQTFSAEGFKCASD--WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSL 437 (459)
T ss_pred cCCCceeeeecccccEEEEeeccccccccc--cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEE
Confidence 9999999999877542211 112333 889999999999999999999999999999999888765554 8888
Q ss_pred EeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+|+|.|..|++++.++.+.+|
T Consensus 438 ---------------------------~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 438 ---------------------------SWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ---------------------------EEcCCCchhhcccCCcceEec
Confidence 999999999999999999999
No 51
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=8.1e-36 Score=233.09 Aligned_cols=277 Identities=28% Similarity=0.437 Sum_probs=241.5
Q ss_pred CcCcccEEEEEEec---cceEEEe------------ecccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC
Q 012799 75 KVSVEKVLSIVYQP---QAVFRIR------------PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT 139 (456)
Q Consensus 75 ~~~~~~~~~~~~~~---~~~~~~~------------~~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~ 139 (456)
..++.++..+.|+| +..|.+. ..+.-+-++.||.+.|.+...+.+...-|+++.|-+-+|||.-+
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~t 90 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVT 90 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhh
Confidence 34667777788775 3333332 22345789999999999999999999999999999999999999
Q ss_pred CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC
Q 012799 140 QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD 219 (456)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d 219 (456)
+..+.++. |..-|.+++|+.|.++|++|+.+..++|||++..+.....+.+|.+.|..+.|.. ..+.+++++.|
T Consensus 91 gdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-----eD~~iLSSadd 164 (334)
T KOG0278|consen 91 GDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-----EDKCILSSADD 164 (334)
T ss_pred hhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-----cCceEEeeccC
Confidence 99999887 9999999999999999999999999999999988776667899999999999988 77889999999
Q ss_pred CcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeecc
Q 012799 220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299 (456)
Q Consensus 220 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 299 (456)
++|++||.+++..+.++. ...+|+++.++++|.+++....+.|.+||..+-..++.+. ....|.+.+++|+
T Consensus 165 ~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~------- 235 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPK------- 235 (334)
T ss_pred CceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeecc-CccccccccccCC-------
Confidence 999999999999999886 5788999999999988888888999999999988888877 3455888888887
Q ss_pred ccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEE
Q 012799 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379 (456)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 379 (456)
...+++|++|+.++.||..++........+|-++|.|+.|+|+|...++|+
T Consensus 236 -----------------------------k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGS 286 (334)
T KOG0278|consen 236 -----------------------------KEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGS 286 (334)
T ss_pred -----------------------------CceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccC
Confidence 566999999999999998888776665689999999999999999999999
Q ss_pred CCCcEEEEeCCCCeEE
Q 012799 380 FDKSIKLWNGTTGKFV 395 (456)
Q Consensus 380 ~dg~i~iwd~~~~~~~ 395 (456)
.||+|++|.+..++..
T Consensus 287 EDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 287 EDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCceEEEEEecCCCch
Confidence 9999999998766543
No 52
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.6e-33 Score=239.07 Aligned_cols=286 Identities=21% Similarity=0.341 Sum_probs=242.4
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce--eEEecCCCCEEEEEEcCCCCEEEEEeCC--CeEEE
Q 012799 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM--FKCTGHKNWVLCIAWSADGKHLVSGSKA--GELQC 176 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~d--g~i~v 176 (456)
...+.+|..+++-..|+|.|.|+|+|...|+|||||....+.+ .+++.-.++|..++|++++++|++.++. +-.++
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~ 131 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV 131 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence 4557789999999999999999999999999999998764433 4566778999999999999999987653 23344
Q ss_pred EeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEE
Q 012799 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIY 255 (456)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~ 255 (456)
+-+++|.... .+.+|...|.++.|-|..+ -++++|+.|+.|.+|+-..-+...++..|..-|.|+.|+||| +++
T Consensus 132 F~~DSG~SvG-ei~GhSr~ins~~~KpsRP----fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fa 206 (603)
T KOG0318|consen 132 FLWDSGNSVG-EITGHSRRINSVDFKPSRP----FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFA 206 (603)
T ss_pred EEecCCCccc-eeeccceeEeeeeccCCCc----eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEE
Confidence 4444666665 5889999999999998543 479999999999999988888888888999999999999999 999
Q ss_pred EEeCCCcEEEEECCCCeEEEEee---cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE
Q 012799 256 TGSQDCTIKVWETTQGKLIRELK---GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (456)
Q Consensus 256 ~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 332 (456)
+++.||.+.+||-.+++.+..+. +|.+.|.+++|+|+ +..+
T Consensus 207 t~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPD------------------------------------s~~~ 250 (603)
T KOG0318|consen 207 TAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPD------------------------------------STQF 250 (603)
T ss_pred EecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCC------------------------------------CceE
Confidence 99999999999999999999997 79999999999998 6679
Q ss_pred EEEeCCCcEEEEecCCCCCCcccccccc--ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799 333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQ--QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410 (456)
Q Consensus 333 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 410 (456)
++++.|.+++|||+...........+.. ..-..+.|. ...|++.+.+|.|.+++...+..+..+.+|...|+++
T Consensus 251 ~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaL-- 326 (603)
T KOG0318|consen 251 LTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITAL-- 326 (603)
T ss_pred EEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEE--
Confidence 9999999999999877643332222222 333445564 5579999999999999999999999999999999999
Q ss_pred eeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+.+||+++|++|+.||.|.=|
T Consensus 327 -------------------------tv~~d~~~i~SgsyDG~I~~W 347 (603)
T KOG0318|consen 327 -------------------------TVSPDGKTIYSGSYDGHINSW 347 (603)
T ss_pred -------------------------EEcCCCCEEEeeccCceEEEE
Confidence 889999999999999999877
No 53
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.2e-34 Score=255.29 Aligned_cols=337 Identities=24% Similarity=0.369 Sum_probs=261.4
Q ss_pred EEEEeccceEEEeecc--cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcC
Q 012799 83 SIVYQPQAVFRIRPVN--RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA 160 (456)
Q Consensus 83 ~~~~~~~~~~~~~~~~--~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 160 (456)
.+-|. +..++++... ...-++.||..+|+++.|+..|..||+||.|+.|.+||+-...-+..+.+|...|+..-|..
T Consensus 81 AVGYa-DGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~ 159 (888)
T KOG0306|consen 81 AVGYA-DGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLN 159 (888)
T ss_pred EEEec-CceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccC
Confidence 44443 3445555444 56678899999999999999999999999999999999998888999999999999999998
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC-----------
Q 012799 161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL----------- 229 (456)
Q Consensus 161 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------- 229 (456)
+.+++++.+.|+.|++||+++..+.. ....|.+.++++++.+ +.+++++.|+.+++|++..
T Consensus 160 ~~~~lvS~sKDs~iK~WdL~tqhCf~-Thvd~r~Eiw~l~~~~-------~~lvt~~~dse~~v~~L~~~~D~~~~~~~~ 231 (888)
T KOG0306|consen 160 GDSFLVSVSKDSMIKFWDLETQHCFE-THVDHRGEIWALVLDE-------KLLVTAGTDSELKVWELAFEDDEKETNRYI 231 (888)
T ss_pred CCeEEEEeccCceEEEEecccceeee-EEecccceEEEEEEec-------ceEEEEecCCceEEEEeecccccccccccc
Confidence 89999999999999999999987765 5677899999999865 6788888889999997500
Q ss_pred -------------CeEE---------------------------------------------------------------
Q 012799 230 -------------RKCV--------------------------------------------------------------- 233 (456)
Q Consensus 230 -------------~~~~--------------------------------------------------------------- 233 (456)
++.+
T Consensus 232 s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i 311 (888)
T KOG0306|consen 232 STKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEI 311 (888)
T ss_pred eeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHH
Confidence 0000
Q ss_pred -------------------------------------------------------EEecCcCccEEEEEeCCCCeEEEEe
Q 012799 234 -------------------------------------------------------ICLSGHTLAVTCVKWGGDGVIYTGS 258 (456)
Q Consensus 234 -------------------------------------------------------~~~~~~~~~v~~~~~~~~~~l~~~~ 258 (456)
..+.+|...|.+++++.+..++..+
T Consensus 312 ~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg 391 (888)
T KOG0306|consen 312 KRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG 391 (888)
T ss_pred HHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec
Confidence 1122678889999999999776677
Q ss_pred CCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHH-----HhhhhhccCCCCCEEE
Q 012799 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA-----LERYNKIKGNAPERLV 333 (456)
Q Consensus 259 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~ 333 (456)
..+.+++|+..+.++++++... ....+--...+..+..+...+....+.......... ...+.....+++..++
T Consensus 392 a~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~v 470 (888)
T KOG0306|consen 392 AGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFV 470 (888)
T ss_pred CCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceE
Confidence 7788999999999998888655 334444444455555555555444443332221111 1223334567788999
Q ss_pred EEeCCCcEEEEecCCCCC----Ccc-------ccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEeccc
Q 012799 334 SGSDDFTMFLWEPAVSKQ----PKT-------RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV 402 (456)
Q Consensus 334 ~~~~dg~i~iwd~~~~~~----~~~-------~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 402 (456)
+|+.|.+|++||...... ... ..-.-+..|.|+.+||||++||.+=.|++|+||-+.+.+..-.+.||.
T Consensus 471 T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHk 550 (888)
T KOG0306|consen 471 TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHK 550 (888)
T ss_pred EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccc
Confidence 999999999999542111 111 111234679999999999999999999999999999999999999999
Q ss_pred ccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 403 GPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 403 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
-||.++ ..|||++.++|||.|.+|+||
T Consensus 551 LPV~sm---------------------------DIS~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 551 LPVLSM---------------------------DISPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred cceeEE---------------------------eccCCcCeEEeccCCCceEEe
Confidence 999999 889999999999999999999
No 54
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7e-34 Score=263.26 Aligned_cols=251 Identities=35% Similarity=0.630 Sum_probs=220.6
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeC-CCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 012799 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL-NTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 178 (456)
..+++.+|...|.+++|+|+++++++++.|++|+|||+ ..+..++++.+|...|++++|+|+++++++|+.|++|++||
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd 274 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWD 274 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEe
Confidence 56777899999999999999999999999999999999 55688899999999999999999999999999999999999
Q ss_pred CCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe--EEEEecCcCcc--EEEEEeCCCC-e
Q 012799 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK--CVICLSGHTLA--VTCVKWGGDG-V 253 (456)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~--v~~~~~~~~~-~ 253 (456)
+++++... .+.+|...|.+++|.+ ++..+++++.|+.|++||+.++. +...+..+... +++++|+|++ +
T Consensus 275 ~~~~~~~~-~l~~hs~~is~~~f~~-----d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ 348 (456)
T KOG0266|consen 275 VRTGECVR-KLKGHSDGISGLAFSP-----DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY 348 (456)
T ss_pred ccCCeEEE-eeeccCCceEEEEECC-----CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE
Confidence 99988776 7899999999999999 99999999999999999999999 56667666554 9999999999 9
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEE
Q 012799 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333 (456)
Q Consensus 254 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 333 (456)
+++++.|+.+++||++.+.....+.+|...+.++ +++. ....+.+++
T Consensus 349 ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~-~~~~--------------------------------~~~~~~~i~ 395 (456)
T KOG0266|consen 349 LLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCI-FSPT--------------------------------LSTGGKLIY 395 (456)
T ss_pred EEEecCCCeEEEEEccCCcceeeecccCCcceeE-eccc--------------------------------ccCCCCeEE
Confidence 9999999999999999999999998887753222 1111 012367799
Q ss_pred EEeCCCcEEEEecCCCCCCccccccc-cccEeEEEECCCCCEEEEEE--CCCcEEEEeCC
Q 012799 334 SGSDDFTMFLWEPAVSKQPKTRMTGH-QQLVNHVYFSPDGQWVASAS--FDKSIKLWNGT 390 (456)
Q Consensus 334 ~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~s~~--~dg~i~iwd~~ 390 (456)
+|+.|+.|++||+.. ...+..+.+| ...+..+.++|..+++++++ .|+.+++|...
T Consensus 396 sg~~d~~v~~~~~~s-~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 396 SGSEDGSVYVWDSSS-GGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEeCCceEEEEeCCc-cchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999999999999766 5566678889 88999999999999999988 78999999753
No 55
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-33 Score=240.53 Aligned_cols=277 Identities=25% Similarity=0.382 Sum_probs=239.0
Q ss_pred CcccEEEEEECCCCCe-EEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCc
Q 012799 107 HTEAVLSVAFSPDGRQ-LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185 (456)
Q Consensus 107 h~~~V~~~~~s~~~~~-l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 185 (456)
..+.|.+++|+|...+ +|+.+ .-.+.+|+..+.....++.-....|.++.|..||+++++|...|.|+++|..+ +.+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~i 102 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVI 102 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHH
Confidence 4568999999996543 44444 34699999998888888888889999999999999999999999999999655 334
Q ss_pred cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--eEEEEeCCCcE
Q 012799 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTI 263 (456)
Q Consensus 186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i 263 (456)
...+.+|..++..+.|+|. ++..|++|+.|+.+++||+.+......+.+|...|.|.+|+|.. .+++|+.||.|
T Consensus 103 LR~~~ah~apv~~~~f~~~----d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~v 178 (487)
T KOG0310|consen 103 LRQLYAHQAPVHVTKFSPQ----DNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKV 178 (487)
T ss_pred HHHHhhccCceeEEEeccc----CCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceE
Confidence 4478899999999999994 67788999999999999999998877889999999999999965 89999999999
Q ss_pred EEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEE
Q 012799 264 KVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF 342 (456)
Q Consensus 264 ~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 342 (456)
++||.+.. ..+.++. |+.+|.++.+-|. +..+++++ ...++
T Consensus 179 rl~DtR~~~~~v~eln-hg~pVe~vl~lps------------------------------------gs~iasAg-Gn~vk 220 (487)
T KOG0310|consen 179 RLWDTRSLTSRVVELN-HGCPVESVLALPS------------------------------------GSLIASAG-GNSVK 220 (487)
T ss_pred EEEEeccCCceeEEec-CCCceeeEEEcCC------------------------------------CCEEEEcC-CCeEE
Confidence 99999987 5566665 8999999998886 34466555 45899
Q ss_pred EEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCc
Q 012799 343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNF 422 (456)
Q Consensus 343 iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~ 422 (456)
+||+..+.+.......|...|+|+++..++..|++|+-||.|++||+.+.+.+..+. -.++|.++
T Consensus 221 VWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsi-------------- 285 (487)
T KOG0310|consen 221 VWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSI-------------- 285 (487)
T ss_pred EEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeE--------------
Confidence 999988888777777799999999999999999999999999999998888888877 67899999
Q ss_pred eeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799 423 YCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 423 ~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i 455 (456)
+.+||++.++.|..||.+-+
T Consensus 286 -------------avs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 286 -------------AVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred -------------EecCCCceEEEecccceeee
Confidence 88999999999999998753
No 56
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=259.49 Aligned_cols=272 Identities=33% Similarity=0.589 Sum_probs=245.1
Q ss_pred CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeE-EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 012799 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK-CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP 184 (456)
Q Consensus 106 ~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 184 (456)
.|...+.+..|. +.++++++.|++|++|+..++..+.. +.+|.+.|.++++..-+.++++|+.|.++++||..+|++
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 367788899998 55799999999999999999998888 999999999999987788999999999999999999998
Q ss_pred ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEE
Q 012799 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIK 264 (456)
Q Consensus 185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~ 264 (456)
.. .+.+|...|.++...+ ..+++|+.|.+|++|++.++.++..+.+|..+|.++..+ .+.+++|+.||+|+
T Consensus 284 ~~-~l~gh~stv~~~~~~~-------~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v~ 354 (537)
T KOG0274|consen 284 TH-SLQGHTSSVRCLTIDP-------FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-EPLLVSGSYDGTVK 354 (537)
T ss_pred EE-EecCCCceEEEEEccC-------ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-CCEEEEEecCceEE
Confidence 87 6789999999998765 578889999999999999999999999999999999999 44999999999999
Q ss_pred EEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEE
Q 012799 265 VWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW 344 (456)
Q Consensus 265 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 344 (456)
+||..++++++++.+|...|.++.+... ..+++|+.|+.|++|
T Consensus 355 VW~~~~~~cl~sl~gH~~~V~sl~~~~~-------------------------------------~~~~Sgs~D~~IkvW 397 (537)
T KOG0274|consen 355 VWDPRTGKCLKSLSGHTGRVYSLIVDSE-------------------------------------NRLLSGSLDTTIKVW 397 (537)
T ss_pred EEEhhhceeeeeecCCcceEEEEEecCc-------------------------------------ceEEeeeeccceEee
Confidence 9999999999999999999999987652 359999999999999
Q ss_pred ecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec-ccccEEEEEeeeeeeecCCCCce
Q 012799 345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-HVGPVYQIRFELIYCFRYPSNFY 423 (456)
Q Consensus 345 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~~~~~ 423 (456)
|+++....+..+.+|...+..+.+ .+++|++++.||.|++||..+++++.++.+ |...|..+
T Consensus 398 dl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l--------------- 460 (537)
T KOG0274|consen 398 DLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSAL--------------- 460 (537)
T ss_pred cCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEe---------------
Confidence 988775677788999998877666 578999999999999999999999999998 67888877
Q ss_pred eeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 424 ~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
++. ...+++++.||++++|
T Consensus 461 ------------~~~--~~~il~s~~~~~~~l~ 479 (537)
T KOG0274|consen 461 ------------ALG--KEEILCSSDDGSVKLW 479 (537)
T ss_pred ------------ecC--cceEEEEecCCeeEEE
Confidence 444 5789999999999998
No 57
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.1e-33 Score=221.01 Aligned_cols=276 Identities=24% Similarity=0.355 Sum_probs=239.5
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeE--EecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEe
Q 012799 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK--CTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWD 178 (456)
Q Consensus 102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd 178 (456)
+.+++|...|.+++|+-+|..||+|+.|+++.+|+++....... ..+|.+.|-.++|+| +...+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 56789999999999999999999999999999999987755443 468999999999998 667999999999999999
Q ss_pred CCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE
Q 012799 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG 257 (456)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~ 257 (456)
.+.+++...+. ....-.-+.|+| +|.++++++.|..|.+.|.++.+.....+ ....+..++|+.++ +++..
T Consensus 94 ~r~~k~~~~i~--~~~eni~i~wsp-----~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt 165 (313)
T KOG1407|consen 94 IRSGKCTARIE--TKGENINITWSP-----DGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLT 165 (313)
T ss_pred eccCcEEEEee--ccCcceEEEEcC-----CCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEe
Confidence 99999875322 233445678999 99999999999999999999887766554 45567788888766 77777
Q ss_pred eCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC
Q 012799 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (456)
Q Consensus 258 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (456)
...|.|.|.....-+++..++.|.....++.|+|+ +.++++|+.
T Consensus 166 ~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~------------------------------------GryfA~GsA 209 (313)
T KOG1407|consen 166 NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPD------------------------------------GRYFATGSA 209 (313)
T ss_pred cCCceEEEEeccccccccccccCCcceEEEEECCC------------------------------------CceEeeccc
Confidence 77799999999999999999999999999999998 677999999
Q ss_pred CCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeec
Q 012799 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR 417 (456)
Q Consensus 338 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 417 (456)
|..+.+||+.. -...+.+..++-+|+.+.||.||++||+|++|..|-|=++++|..+..++ +.++...+
T Consensus 210 DAlvSLWD~~E-LiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tV--------- 278 (313)
T KOG1407|consen 210 DALVSLWDVDE-LICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTV--------- 278 (313)
T ss_pred cceeeccChhH-hhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeE---------
Confidence 99999999653 34556677889999999999999999999999999999999999999887 78888888
Q ss_pred CCCCceeeecccccccceeEecCCCeEEEeeCC
Q 012799 418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD 450 (456)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~D 450 (456)
+|+|...+||-+..|
T Consensus 279 ------------------AWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 279 ------------------AWHPKRPLLAYACDD 293 (313)
T ss_pred ------------------EecCCCceeeEEecC
Confidence 999999999987765
No 58
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-32 Score=221.62 Aligned_cols=282 Identities=23% Similarity=0.333 Sum_probs=233.1
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeC--CCeEEEEe
Q 012799 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK--AGELQCWD 178 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd 178 (456)
.+.++.-.+.|+++.|+++|.+|++++.|.++++||..+++.+.++..+...+..+.|....+.++.++. |.+|+..+
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 3445567889999999999999999999999999999999999999989999999999987777777776 88999999
Q ss_pred CCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE
Q 012799 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG 257 (456)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~ 257 (456)
+.+++.++ .+.+|...|.+++.+| .++.+++++.|++|++||++..++...+.....+ .++|+|+| .++++
T Consensus 87 l~dNkylR-YF~GH~~~V~sL~~sP-----~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~ 158 (311)
T KOG1446|consen 87 LHDNKYLR-YFPGHKKRVNSLSVSP-----KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALA 158 (311)
T ss_pred eecCceEE-EcCCCCceEEEEEecC-----CCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEe
Confidence 99999886 7999999999999999 6689999999999999999988887776544443 47899999 66666
Q ss_pred eCCCcEEEEECCCC--eEEEEee---cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE
Q 012799 258 SQDCTIKVWETTQG--KLIRELK---GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (456)
Q Consensus 258 ~~dg~i~iwd~~~~--~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 332 (456)
.....|++||++.- .+..++. ......+.+.|+|+ |.++
T Consensus 159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~d------------------------------------GK~i 202 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPD------------------------------------GKSI 202 (311)
T ss_pred cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCC------------------------------------CCEE
Confidence 66669999999863 3444443 33667888999998 6679
Q ss_pred EEEeCCCcEEEEecCCCCCCcccccccccc---EeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec-ccccEEEE
Q 012799 333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQL---VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-HVGPVYQI 408 (456)
Q Consensus 333 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~i 408 (456)
+.++..+.+++.|.-.+. ....+..+... ....+|+||++++++|+.||+|.+|++++|..+..+++ +.+++.++
T Consensus 203 LlsT~~s~~~~lDAf~G~-~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~ 281 (311)
T KOG1446|consen 203 LLSTNASFIYLLDAFDGT-VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCV 281 (311)
T ss_pred EEEeCCCcEEEEEccCCc-EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCcccc
Confidence 999999999999966554 44444444332 25778999999999999999999999999999999998 68899888
Q ss_pred EeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.|+|.-.+++|++ ..+-+|
T Consensus 282 ---------------------------~fnP~~~mf~sa~--s~l~fw 300 (311)
T KOG1446|consen 282 ---------------------------RFNPRYAMFVSAS--SNLVFW 300 (311)
T ss_pred ---------------------------ccCCceeeeeecC--ceEEEE
Confidence 7788766776665 445555
No 59
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.2e-34 Score=223.51 Aligned_cols=243 Identities=28% Similarity=0.518 Sum_probs=214.8
Q ss_pred CcccEEEEEECCC-CCeEEEEECCCcEEEEeCCC-CcceeEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCC
Q 012799 107 HTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNT-QTPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGK 183 (456)
Q Consensus 107 h~~~V~~~~~s~~-~~~l~~~~~d~~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~ 183 (456)
-.+.+..++|+++ .+.+++++.||++++||+.. ..++..++.|...|.++.|++ ++..+++++.|++|++|+...++
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 4678999999996 46788899999999999643 467888999999999999998 56678888999999999998888
Q ss_pred CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--eEEEEeCCC
Q 012799 184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDC 261 (456)
Q Consensus 184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg 261 (456)
.+. .+.+|...|....|+|. ..+.+++++.|+.+++||++.......+..|...+.|+.|+.-. .+++|+.|+
T Consensus 139 Sv~-Tf~gh~~~Iy~a~~sp~----~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~ 213 (311)
T KOG0277|consen 139 SVQ-TFNGHNSCIYQAAFSPH----IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDN 213 (311)
T ss_pred ceE-eecCCccEEEEEecCCC----CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCc
Confidence 776 58899999999999996 56799999999999999998765555688999999999999855 899999999
Q ss_pred cEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCc
Q 012799 262 TIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (456)
Q Consensus 262 ~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 340 (456)
.|+.||+++- .++..+.+|+-.|+.+.++|.. ...|++++.|-+
T Consensus 214 ~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~-----------------------------------~~lLaSasYDmT 258 (311)
T KOG0277|consen 214 LVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHH-----------------------------------ASLLASASYDMT 258 (311)
T ss_pred eEEEEehhhccccceeecCCceEEEEEecCcch-----------------------------------hhHhhhccccce
Confidence 9999999874 5788889999999999999973 445999999999
Q ss_pred EEEEecCCCCCCccccccccccEeEEEECC-CCCEEEEEECCCcEEEEeC
Q 012799 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNG 389 (456)
Q Consensus 341 i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~ 389 (456)
++|||.......+.+...|..-+..+.||+ ++.++|+++.|+.++||+.
T Consensus 259 ~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 259 VRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 999998888888888889999999999999 6778999999999999983
No 60
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.7e-32 Score=273.21 Aligned_cols=260 Identities=20% Similarity=0.345 Sum_probs=218.0
Q ss_pred CCcEEEEeCCCCcceeE-----EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC----cc--ccccCcccceE
Q 012799 129 DTTVRLWDLNTQTPMFK-----CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP----SG--NPLSGHKKWIT 197 (456)
Q Consensus 129 d~~v~vwd~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~--~~~~~~~~~v~ 197 (456)
+|.+++|+......... +..|...|.+++|+|+++++++|+.|+.|++|+...... .. .....+...+.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 536 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS 536 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence 66788888776544333 335899999999999999999999999999999864211 00 01122346788
Q ss_pred EEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC-CC-eEEEEeCCCcEEEEECCCCeEEE
Q 012799 198 GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DG-VIYTGSQDCTIKVWETTQGKLIR 275 (456)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~ 275 (456)
+++|++. .+.++++++.||.|++||+.+++.+..+.+|...|++++|+| ++ .|++|+.||.|++||++++..+.
T Consensus 537 ~l~~~~~----~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 537 GICWNSY----IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG 612 (793)
T ss_pred eEEeccC----CCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence 9999873 467899999999999999999999999999999999999997 55 89999999999999999998888
Q ss_pred EeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccc
Q 012799 276 ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR 355 (456)
Q Consensus 276 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 355 (456)
.+..+ ..+.++.|++. ++..+++|+.||.|++||++........
T Consensus 613 ~~~~~-~~v~~v~~~~~-----------------------------------~g~~latgs~dg~I~iwD~~~~~~~~~~ 656 (793)
T PLN00181 613 TIKTK-ANICCVQFPSE-----------------------------------SGRSLAFGSADHKVYYYDLRNPKLPLCT 656 (793)
T ss_pred EEecC-CCeEEEEEeCC-----------------------------------CCCEEEEEeCCCeEEEEECCCCCccceE
Confidence 88754 57888888553 2667999999999999998876656666
Q ss_pred cccccccEeEEEECCCCCEEEEEECCCcEEEEeCCC------CeEEEEEecccccEEEEEeeeeeeecCCCCceeeeccc
Q 012799 356 MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT------GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMS 429 (456)
Q Consensus 356 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~ 429 (456)
+.+|...|.++.|. ++.+|++++.|+.|++||+.. ...+..+.+|...+..+
T Consensus 657 ~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v--------------------- 714 (793)
T PLN00181 657 MIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV--------------------- 714 (793)
T ss_pred ecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE---------------------
Confidence 78999999999997 778999999999999999974 35678899999999988
Q ss_pred ccccceeEecCCCeEEEeeCCCceEEC
Q 012799 430 CCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 430 ~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+|+|++++|++|+.||.|+||
T Consensus 715 ------~~s~~~~~lasgs~D~~v~iw 735 (793)
T PLN00181 715 ------GLSVSDGYIATGSETNEVFVY 735 (793)
T ss_pred ------EEcCCCCEEEEEeCCCEEEEE
Confidence 889999999999999999998
No 61
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-32 Score=244.21 Aligned_cols=271 Identities=25% Similarity=0.418 Sum_probs=234.1
Q ss_pred EEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCc
Q 012799 113 SVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGH 192 (456)
Q Consensus 113 ~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 192 (456)
-+.|+ ..+.||.|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||..+.+........|
T Consensus 182 lldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h 259 (484)
T KOG0305|consen 182 LLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH 259 (484)
T ss_pred Hhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc
Confidence 45677 345677775 4479999999988666666668999999999999999999999999999999888777444449
Q ss_pred ccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCC
Q 012799 193 KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQ 270 (456)
Q Consensus 193 ~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~ 270 (456)
...|.+++|.. ..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++++ ++++|+.|+.+.|||...
T Consensus 260 ~~rvg~laW~~-------~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~ 332 (484)
T KOG0305|consen 260 ASRVGSLAWNS-------SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS 332 (484)
T ss_pred CceeEEEeccC-------ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCC
Confidence 99999999964 7899999999999999998876665 88999999999999999 999999999999999988
Q ss_pred CeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEE--eCCCcEEEEecCC
Q 012799 271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG--SDDFTMFLWEPAV 348 (456)
Q Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~ 348 (456)
..+...+..|...|..++|+|-. ...||+| +.|+.|++||..+
T Consensus 333 ~~p~~~~~~H~aAVKA~awcP~q-----------------------------------~~lLAsGGGs~D~~i~fwn~~~ 377 (484)
T KOG0305|consen 333 PEPKFTFTEHTAAVKALAWCPWQ-----------------------------------SGLLATGGGSADRCIKFWNTNT 377 (484)
T ss_pred ccccEEEeccceeeeEeeeCCCc-----------------------------------cCceEEcCCCcccEEEEEEcCC
Confidence 89999999999999999999973 4557776 4699999999876
Q ss_pred CCCCccccccccccEeEEEECCCCCEEEE--EECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeee
Q 012799 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVAS--ASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV 426 (456)
Q Consensus 349 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~ 426 (456)
+........ ...|.++.|++..+-|++ |..++.|.||+..+.+.+..+.+|...|..+
T Consensus 378 g~~i~~vdt--gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~l------------------ 437 (484)
T KOG0305|consen 378 GARIDSVDT--GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYL------------------ 437 (484)
T ss_pred CcEeccccc--CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEE------------------
Confidence 654444333 466999999998876665 4567799999999999999999999999999
Q ss_pred cccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 427 DMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 427 ~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+++|||..+++|+.|.++++|
T Consensus 438 ---------a~SPdg~~i~t~a~DETlrfw 458 (484)
T KOG0305|consen 438 ---------ALSPDGETIVTGAADETLRFW 458 (484)
T ss_pred ---------EECCCCCEEEEecccCcEEec
Confidence 999999999999999999999
No 62
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=8.2e-33 Score=227.68 Aligned_cols=272 Identities=19% Similarity=0.301 Sum_probs=220.9
Q ss_pred cCcCcccEEEEEEeccceE----------EEeec--ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc
Q 012799 74 HKVSVEKVLSIVYQPQAVF----------RIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT 141 (456)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~----------~~~~~--~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~ 141 (456)
...+...++.+...|...+ .+|.. +....++.||.+.|+++.|+.+|.+||||+.+|.|+||+..++.
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~ 139 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG 139 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc
Confidence 3457778888888874322 12322 33667899999999999999999999999999999999999999
Q ss_pred ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCc
Q 012799 142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221 (456)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~ 221 (456)
....+...-..+.=+.|+|.+..|+.|+.||.+.+|.+.++... +.+.+|..++++-.|.| +|+.++++..||+
T Consensus 140 ~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~-kv~~Gh~~~ct~G~f~p-----dGKr~~tgy~dgt 213 (399)
T KOG0296|consen 140 EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALC-KVMSGHNSPCTCGEFIP-----DGKRILTGYDDGT 213 (399)
T ss_pred eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCccee-eEecCCCCCcccccccC-----CCceEEEEecCce
Confidence 88888767778889999999999999999999999999986443 47899999999999999 9999999999999
Q ss_pred EEEEECCCCeEEEEecC---------------------------------------------------cCccEEEEEeCC
Q 012799 222 ARIWDVSLRKCVICLSG---------------------------------------------------HTLAVTCVKWGG 250 (456)
Q Consensus 222 i~iwd~~~~~~~~~~~~---------------------------------------------------~~~~v~~~~~~~ 250 (456)
|++||..+++++..+.. +...+.|+.+.|
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP 293 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc
Confidence 99999998887766541 011122233333
Q ss_pred CC----eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccC
Q 012799 251 DG----VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326 (456)
Q Consensus 251 ~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (456)
.. ..++|+.||+|.|||+...++..... |...|..+.|-+.
T Consensus 294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~t---------------------------------- 338 (399)
T KOG0296|consen 294 SSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLNT---------------------------------- 338 (399)
T ss_pred cccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcCc----------------------------------
Confidence 22 45677888888888887765544444 6777888888762
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (456)
Q Consensus 327 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 390 (456)
.+|++++.+|.|+.||.++++ .+..+.+|...|.+++++|++++++|+|.|++.+||+..
T Consensus 339 ---~~l~t~c~~g~v~~wDaRtG~-l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 339 ---DYLLTACANGKVRQWDARTGQ-LKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ---chheeeccCceEEeeeccccc-eEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 359999999999999977664 677789999999999999999999999999999999864
No 63
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-32 Score=250.28 Aligned_cols=271 Identities=20% Similarity=0.383 Sum_probs=229.9
Q ss_pred cccEEEEEEeccceE----------EEee--cccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeE
Q 012799 78 VEKVLSIVYQPQAVF----------RIRP--VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK 145 (456)
Q Consensus 78 ~~~~~~~~~~~~~~~----------~~~~--~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~ 145 (456)
+..+-.+.|+|...+ ++|+ -+.++..|.+|.++|..++|+|++.++++|+.|-.|+||+..+.+++.+
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft 88 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT 88 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh
Confidence 344555666665533 3343 2567889999999999999999999999999999999999999999999
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEE
Q 012799 146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW 225 (456)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 225 (456)
+.+|-+.|..+.|++.-.+|+++|.|.+|+||++++++++. .+.+|...|.|..|+| ....++++|-|.+|++|
T Consensus 89 L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~ia-vltGHnHYVMcAqFhp-----tEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 89 LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIA-VLTGHNHYVMCAQFHP-----TEDLIVSASLDQTVRVW 162 (1202)
T ss_pred hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEE-EEecCceEEEeeccCC-----ccceEEEecccceEEEE
Confidence 99999999999999999999999999999999999999887 7999999999999999 77899999999999999
Q ss_pred ECCCCe-----------------------------EEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeE--
Q 012799 226 DVSLRK-----------------------------CVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKL-- 273 (456)
Q Consensus 226 d~~~~~-----------------------------~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-- 273 (456)
|+..-+ ....+.+|...|+-++|+|.- .+++|+.|..|++|.+...+.
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWE 242 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 242 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccccee
Confidence 984210 123567899999999999977 999999999999999876553
Q ss_pred EEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCc
Q 012799 274 IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353 (456)
Q Consensus 274 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 353 (456)
+.+..+|...|.++-|+|. .+.+++.++|+.|++||+... ..+
T Consensus 243 vDtcrgH~nnVssvlfhp~------------------------------------q~lIlSnsEDksirVwDm~kR-t~v 285 (1202)
T KOG0292|consen 243 VDTCRGHYNNVSSVLFHPH------------------------------------QDLILSNSEDKSIRVWDMTKR-TSV 285 (1202)
T ss_pred ehhhhcccCCcceEEecCc------------------------------------cceeEecCCCccEEEEecccc-cce
Confidence 4566889999999999997 556999999999999997654 455
Q ss_pred cccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCC
Q 012799 354 TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG 392 (456)
Q Consensus 354 ~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 392 (456)
..+....+..+.++.+|..+++++|. |+-+.+|.++.-
T Consensus 286 ~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkleRE 323 (1202)
T KOG0292|consen 286 QTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLERE 323 (1202)
T ss_pred eeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEccc
Confidence 55666667889999999999887765 666778877643
No 64
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2e-34 Score=245.53 Aligned_cols=250 Identities=25% Similarity=0.437 Sum_probs=218.7
Q ss_pred CcceeEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC
Q 012799 140 QTPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK 218 (456)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~ 218 (456)
.+.+.++.+|...|+++.|.| .+.+|++++.|+.|+||++.......+.+.+|..+|.+++|++ +|..|++++.
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-----~g~~fLS~sf 278 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-----CGTSFLSASF 278 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-----cCCeeeeeec
Confidence 345678889999999999999 8999999999999999999885545558999999999999999 9999999999
Q ss_pred CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceee
Q 012799 219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR 296 (456)
Q Consensus 219 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 296 (456)
|+.+++||+++|+++..+. ....++|+.|.|++ .+++|+.|+.|+.||+++++.++++..|-+.|..+.|-++
T Consensus 279 D~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~---- 353 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDE---- 353 (503)
T ss_pred ceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccC----
Confidence 9999999999999999886 35678999999988 8999999999999999999999999999999999999988
Q ss_pred eccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEE
Q 012799 297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA 376 (456)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 376 (456)
+.++++.++|+.++||+.+..-........+.....++..+|++++++
T Consensus 354 --------------------------------g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~ 401 (503)
T KOG0282|consen 354 --------------------------------GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFA 401 (503)
T ss_pred --------------------------------CceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeeh
Confidence 677999999999999998776655554445555678899999999999
Q ss_pred EEECCCcEEEEeCCCC---eEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCce
Q 012799 377 SASFDKSIKLWNGTTG---KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL 453 (456)
Q Consensus 377 s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v 453 (456)
.-+.|+.|.++.+... .....+++|..+-.++.. .|||||++|++|+.||.+
T Consensus 402 aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v-------------------------~fSpDG~~l~SGdsdG~v 456 (503)
T KOG0282|consen 402 AQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQV-------------------------DFSPDGRTLCSGDSDGKV 456 (503)
T ss_pred hhccCceEEEEecccccccCHhhhhcceeccCceeeE-------------------------EEcCCCCeEEeecCCccE
Confidence 9999999999997653 234467788766555533 899999999999999999
Q ss_pred EEC
Q 012799 454 KVT 456 (456)
Q Consensus 454 ~iW 456 (456)
.+|
T Consensus 457 ~~w 459 (503)
T KOG0282|consen 457 NFW 459 (503)
T ss_pred EEe
Confidence 998
No 65
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.8e-32 Score=232.23 Aligned_cols=275 Identities=26% Similarity=0.415 Sum_probs=230.6
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCccee-----------------EE-ecCCCCEEEEEEcCCC
Q 012799 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-----------------KC-TGHKNWVLCIAWSADG 162 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~-----------------~~-~~~~~~v~~~~~~~~~ 162 (456)
...+..|.-+|.+++++|++++.++++.+++|.-|++.+++... .- ..|...+.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 34567899999999999999999999999999999988765320 01 2688899999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCcc
Q 012799 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA 242 (456)
Q Consensus 163 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 242 (456)
++|++|+.|..|.||+.++.+.+. .+.+|.+.|.+++|.. ....+++++.|+.|++|++.....+.++.+|+..
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~-~~~ghr~~V~~L~fr~-----gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~ 288 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVK-VFKGHRGAVSSLAFRK-----GTSELYSASADRSVKVWSIDQLSYVETLYGHQDG 288 (479)
T ss_pred cEEEecCCCceEEEecCcccchhh-cccccccceeeeeeec-----CccceeeeecCCceEEEehhHhHHHHHHhCCccc
Confidence 999999999999999999999886 5899999999999987 6678999999999999999999999999999999
Q ss_pred EEEEEeCCCCeEE-EEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhh
Q 012799 243 VTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321 (456)
Q Consensus 243 v~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (456)
|..+.....+.++ +|+.|+++++|++.. .....+.++.+.+.++++-.+
T Consensus 289 v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~----------------------------- 338 (479)
T KOG0299|consen 289 VLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND----------------------------- 338 (479)
T ss_pred eeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-----------------------------
Confidence 9999988877555 555999999999954 445566778888999988754
Q ss_pred hhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc-----------cccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-----------QQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (456)
Q Consensus 322 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 390 (456)
..+++|+.+|.|.+|++.+.+.....-.+| ..+|++++..|...++|+|+.+|.|++|-+.
T Consensus 339 --------~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 339 --------EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred --------cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEec
Confidence 459999999999999977655433222222 2389999999999999999999999999998
Q ss_pred CC----eEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEe
Q 012799 391 TG----KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG 447 (456)
Q Consensus 391 ~~----~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~ 447 (456)
+| +++..+. -.+.|+++ +|+++|+.|++|
T Consensus 411 ~g~r~i~~l~~ls-~~GfVNsl---------------------------~f~~sgk~ivag 443 (479)
T KOG0299|consen 411 DGLRAINLLYSLS-LVGFVNSL---------------------------AFSNSGKRIVAG 443 (479)
T ss_pred CCccccceeeecc-cccEEEEE---------------------------EEccCCCEEEEe
Confidence 87 4455555 56778888 889999966655
No 66
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=5.7e-33 Score=223.92 Aligned_cols=307 Identities=22% Similarity=0.363 Sum_probs=245.4
Q ss_pred EEEEEeccceEE-EeecccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC------------------Ccc
Q 012799 82 LSIVYQPQAVFR-IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT------------------QTP 142 (456)
Q Consensus 82 ~~~~~~~~~~~~-~~~~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~------------------~~~ 142 (456)
+.++|+++..-. -.|..-....+..|..++.+.+|+|||.++|+|+.|..|+|.|++. ...
T Consensus 85 iDle~dadaq~~s~e~~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPv 164 (430)
T KOG0640|consen 85 IDLEFDADAQGSSPEPSEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPV 164 (430)
T ss_pred eeeeeccccccCCCCCcccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCce
Confidence 556666543221 1233334567889999999999999999999999999999999862 124
Q ss_pred eeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc-ccccCcccceEEEEecccccCCCCCEEEEEeCCCc
Q 012799 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221 (456)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~ 221 (456)
++++..|...|+++.|+|....|++|+.|++|+++|+....... ........+|.++.|+| .|.++++|....+
T Consensus 165 IRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-----sGefllvgTdHp~ 239 (430)
T KOG0640|consen 165 IRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-----SGEFLLVGTDHPT 239 (430)
T ss_pred EeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-----CCceEEEecCCCc
Confidence 56777899999999999999999999999999999997543221 11223456799999999 9999999999999
Q ss_pred EEEEECCCCeEEEEe---cCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeec-C-CcceEEEEecCccee
Q 012799 222 ARIWDVSLRKCVICL---SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKG-H-GHWVNSLALSTEYAL 295 (456)
Q Consensus 222 i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-~-~~~i~~~~~~~~~~~ 295 (456)
+++||+++-++...- ..|.+.|+++.+++.+ +.++++.||.|++||--+++++.++.. | +..|.+..|..+
T Consensus 240 ~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn--- 316 (430)
T KOG0640|consen 240 LRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKN--- 316 (430)
T ss_pred eeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccC---
Confidence 999999999887654 3688999999999999 888999999999999999999988853 3 456888888887
Q ss_pred eeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccc----cccccEeEEEECCC
Q 012799 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT----GHQQLVNHVYFSPD 371 (456)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~v~~~~~sp~ 371 (456)
+.++++.+.|..+++|.+.++........ +....-+...|+..
T Consensus 317 ---------------------------------~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNht 363 (430)
T KOG0640|consen 317 ---------------------------------GKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHT 363 (430)
T ss_pred ---------------------------------CeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCc
Confidence 66799999999999999887765444321 12222345567777
Q ss_pred CCEEEEEE-CCCcEEEEeCCCCeEEEEEe-cccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC
Q 012799 372 GQWVASAS-FDKSIKLWNGTTGKFVAVFR-GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449 (456)
Q Consensus 372 ~~~l~s~~-~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~ 449 (456)
..|++.-. ..+.+.-||.+++..+..+. +|.+++..+ .-||.+.-+++||.
T Consensus 364 EdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i---------------------------~HSP~~p~FmTcsd 416 (430)
T KOG0640|consen 364 EDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWI---------------------------VHSPVEPAFMTCSD 416 (430)
T ss_pred cceEEccccccCceeeccccchhhhhhcccCCCCCceEE---------------------------EeCCCCCceeeecc
Confidence 77766543 34679999999987766554 899999999 67999999999999
Q ss_pred CCceEEC
Q 012799 450 DSTLKVT 456 (456)
Q Consensus 450 Dg~v~iW 456 (456)
|-..|+|
T Consensus 417 D~raRFW 423 (430)
T KOG0640|consen 417 DFRARFW 423 (430)
T ss_pred cceeeee
Confidence 9999999
No 67
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.1e-33 Score=251.73 Aligned_cols=252 Identities=27% Similarity=0.454 Sum_probs=205.0
Q ss_pred ccccc-CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC----------------------------------------
Q 012799 101 SATIA-GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT---------------------------------------- 139 (456)
Q Consensus 101 ~~~l~-~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~---------------------------------------- 139 (456)
.+.+. +|.+.|.++.||+||+|||+||.||.|+||.+..
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 35566 8999999999999999999999999999998654
Q ss_pred --------------------CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEE
Q 012799 140 --------------------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI 199 (456)
Q Consensus 140 --------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 199 (456)
.+++..+.||.+.|..+.|+.+ ++|++++.|.+|++|++....++. ...|...|+|+
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~--~F~HndfVTcV 415 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLK--VFSHNDFVTCV 415 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceee--EEecCCeeEEE
Confidence 0133445689999999999955 589999999999999999888875 67899999999
Q ss_pred EecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEee
Q 012799 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK 278 (456)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~ 278 (456)
+|+|. |.++|++|+-||.|+||++...+.+.-.. -..-|++++|.|+| ..++|+.+|.+++|+....+......
T Consensus 416 aFnPv----DDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 416 AFNPV----DDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred Eeccc----CCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 99996 78999999999999999998877665544 34789999999999 89999999999999988766544332
Q ss_pred cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccccc
Q 012799 279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG 358 (456)
Q Consensus 279 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 358 (456)
|.+ ...+ +. .
T Consensus 491 --------------------------------------------------------------I~~---~~~K----k~-~ 500 (712)
T KOG0283|consen 491 --------------------------------------------------------------IRL---HNKK----KK-Q 500 (712)
T ss_pred --------------------------------------------------------------Eee---ccCc----cc-c
Confidence 111 1111 12 2
Q ss_pred ccccEeEEEECCC-CCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeE
Q 012799 359 HQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW 437 (456)
Q Consensus 359 ~~~~v~~~~~sp~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (456)
|. .|+.+.|.|. ...|++.+.|..|+|||.++.+++..|+|+...-..+.- .|
T Consensus 501 ~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~A-------------------------sf 554 (712)
T KOG0283|consen 501 GK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISA-------------------------SF 554 (712)
T ss_pred Cc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceee-------------------------eE
Confidence 33 6999999984 334667789999999999999999999977654433322 78
Q ss_pred ecCCCeEEEeeCCCceEEC
Q 012799 438 SADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 438 s~dg~~l~s~s~Dg~v~iW 456 (456)
+.||++|+++++|..|+||
T Consensus 555 s~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 555 SSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred ccCCCEEEEeecCceEEEE
Confidence 9999999999999999999
No 68
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=5.9e-32 Score=227.43 Aligned_cols=278 Identities=21% Similarity=0.334 Sum_probs=245.4
Q ss_pred ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 188 (456)
..|.++...|....+++|+.|..+.++|..+++.+..+.||...|+.+.|+|+...+++++.|..|+||......... .
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~-~ 298 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT-S 298 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc-c
Confidence 578888888887889999999999999999999999999999999999999999999999999999999987665443 6
Q ss_pred ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC--cCccEEEEEeCCCC-eEEEEeCCCcEEE
Q 012799 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG--HTLAVTCVKWGGDG-VIYTGSQDCTIKV 265 (456)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~l~~~~~dg~i~i 265 (456)
...|..+|+.+..+| .|.||++++.||...+.|++++.++..... ..-.+++.+|+||| .|.+|..||.+++
T Consensus 299 ~~~h~~~V~~ls~h~-----tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki 373 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHP-----TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI 373 (506)
T ss_pred cccccccceeeeecc-----CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence 788999999999999 999999999999999999999998776643 34568999999999 8889999999999
Q ss_pred EECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEe
Q 012799 266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE 345 (456)
Q Consensus 266 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 345 (456)
||+.++..+..|.+|.++|..++|+.+ |.+++++++|+.|++||
T Consensus 374 wdlks~~~~a~Fpght~~vk~i~FsEN------------------------------------GY~Lat~add~~V~lwD 417 (506)
T KOG0289|consen 374 WDLKSQTNVAKFPGHTGPVKAISFSEN------------------------------------GYWLATAADDGSVKLWD 417 (506)
T ss_pred EEcCCccccccCCCCCCceeEEEeccC------------------------------------ceEEEEEecCCeEEEEE
Confidence 999999999999999999999999998 66699999999999999
Q ss_pred cCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC--CCeEEEEEecccccEEEEEeeeeeeecCCCCce
Q 012799 346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT--TGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY 423 (456)
Q Consensus 346 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~ 423 (456)
++...............+.++.|.+.|.+|+.++.|=.|++++-. +...+..+..|.+..+.+
T Consensus 418 LRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v--------------- 482 (506)
T KOG0289|consen 418 LRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGV--------------- 482 (506)
T ss_pred ehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhccccccee---------------
Confidence 998765544444444579999999999999999888777777643 456677788888888888
Q ss_pred eeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799 424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 424 ~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i 455 (456)
.|....++++++|.|..+++
T Consensus 483 ------------~Fg~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 483 ------------RFGEHAQYLASTSMDAILRL 502 (506)
T ss_pred ------------eecccceEEeeccchhheEE
Confidence 78888999999999998876
No 69
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.1e-31 Score=234.74 Aligned_cols=246 Identities=39% Similarity=0.679 Sum_probs=219.5
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 179 (456)
....+.+|...+.++.|+|+++++++++.||.|++|++.+++....+..|...+.++.|+++++++++++.||.+.+||+
T Consensus 43 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (289)
T cd00200 43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122 (289)
T ss_pred cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC
Confidence 45677889999999999999999999999999999999988888888899999999999999889999888999999999
Q ss_pred CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe
Q 012799 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS 258 (456)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~ 258 (456)
.+++... .+..|...+.++.|+| ++.++++++.|+.|++||+++++.+..+..|...+.++.|+|++ .+++++
T Consensus 123 ~~~~~~~-~~~~~~~~i~~~~~~~-----~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 196 (289)
T cd00200 123 ETGKCLT-TLRGHTDWVNSVAFSP-----DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS 196 (289)
T ss_pred CCcEEEE-EeccCCCcEEEEEEcC-----cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec
Confidence 9776654 4557888999999999 67788888889999999999999888888899999999999999 888899
Q ss_pred CCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC
Q 012799 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (456)
Q Consensus 259 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 338 (456)
.+|.+++||++.++.+..+..+...+.++.++++ +.++++++.|
T Consensus 197 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~------------------------------------~~~~~~~~~~ 240 (289)
T cd00200 197 SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD------------------------------------GYLLASGSED 240 (289)
T ss_pred CCCcEEEEECCCCceecchhhcCCceEEEEEcCC------------------------------------CcEEEEEcCC
Confidence 9999999999999998888788889999999987 4457777779
Q ss_pred CcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEe
Q 012799 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388 (456)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd 388 (456)
+.+++||+.... ....+..|...|.+++|+|++++|++++.||.+++|+
T Consensus 241 ~~i~i~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 241 GTIRVWDLRTGE-CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEcCCce-eEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999976543 4445668888999999999999999999999999996
No 70
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-32 Score=230.29 Aligned_cols=274 Identities=23% Similarity=0.366 Sum_probs=220.9
Q ss_pred CcccEEEEEEeccceEEEee-------------c--ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc
Q 012799 77 SVEKVLSIVYQPQAVFRIRP-------------V--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT 141 (456)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~-------------~--~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~ 141 (456)
+...+.-+.|++...+.... . -+..++|.||..+|..+.||||.++|++++.|..+.+||+.+|.
T Consensus 223 htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd 302 (519)
T KOG0293|consen 223 HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGD 302 (519)
T ss_pred CCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcch
Confidence 66778888888766432211 1 23568999999999999999999999999999999999999999
Q ss_pred ceeEEe-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC
Q 012799 142 PMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG 220 (456)
Q Consensus 142 ~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg 220 (456)
....+. ++...+.+.+|.|||..+++|+.|+.+..||++....-. -.......|.+++..+ ||.++++.+.|.
T Consensus 303 ~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~-W~gvr~~~v~dlait~-----Dgk~vl~v~~d~ 376 (519)
T KOG0293|consen 303 LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGN-WEGVRDPKVHDLAITY-----DGKYVLLVTVDK 376 (519)
T ss_pred hhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhc-ccccccceeEEEEEcC-----CCcEEEEEeccc
Confidence 887765 456889999999999999999999999999997554221 1222235688999888 999999999999
Q ss_pred cEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeecc
Q 012799 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299 (456)
Q Consensus 221 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 299 (456)
.|++++.++......+. ...+|++++.+.++ ++++.-.+..+++||+...+.++.+.+|...-.-+.-.
T Consensus 377 ~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSC--------- 446 (519)
T KOG0293|consen 377 KIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSC--------- 446 (519)
T ss_pred ceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEec---------
Confidence 99999988766554333 46789999999999 77778889999999999888888888876543322211
Q ss_pred ccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECC-CCCEEEEE
Q 012799 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASA 378 (456)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~ 378 (456)
+.+.+..++++|++|+.|+||+ +....++..+.||...|++++|+| +-.++|++
T Consensus 447 ------------------------Fgg~~~~fiaSGSED~kvyIWh-r~sgkll~~LsGHs~~vNcVswNP~~p~m~ASa 501 (519)
T KOG0293|consen 447 ------------------------FGGGNDKFIASGSEDSKVYIWH-RISGKLLAVLSGHSKTVNCVSWNPADPEMFASA 501 (519)
T ss_pred ------------------------cCCCCcceEEecCCCceEEEEE-ccCCceeEeecCCcceeeEEecCCCCHHHhhcc
Confidence 1122356799999999999999 556678888999999999999999 55669999
Q ss_pred ECCCcEEEEeCCC
Q 012799 379 SFDKSIKLWNGTT 391 (456)
Q Consensus 379 ~~dg~i~iwd~~~ 391 (456)
+.||+|+||....
T Consensus 502 sDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 502 SDDGTIRIWGPSD 514 (519)
T ss_pred CCCCeEEEecCCc
Confidence 9999999998654
No 71
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=3.1e-32 Score=254.28 Aligned_cols=281 Identities=26% Similarity=0.425 Sum_probs=231.8
Q ss_pred CCcccEEEEEECCCCCeEEEEE--CCCcEEEEeCCC------------CcceeEEecCCCCEEEEEEcCCCCEEEEEeCC
Q 012799 106 GHTEAVLSVAFSPDGRQLASGS--GDTTVRLWDLNT------------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA 171 (456)
Q Consensus 106 ~h~~~V~~~~~s~~~~~l~~~~--~d~~v~vwd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 171 (456)
.+...|.+++.+|||..+|||+ .|+.++||+.+. .+.+.+...|.+.|+|+.|+|||++||+|+.|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 3566799999999999999999 999999998643 23455667899999999999999999999999
Q ss_pred CeEEEEeCCC----------CC-------CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 012799 172 GELQCWDPQT----------GK-------PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI 234 (456)
Q Consensus 172 g~i~vwd~~~----------~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 234 (456)
+.|.||.... |. .....+.+|...|..++|+| ++.++++++.|++|.+||..+.+.+.
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-----~~~~lvS~s~DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-----DDSLLVSVSLDNSVIIWNAKTFELLK 165 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-----CccEEEEecccceEEEEccccceeee
Confidence 9999999873 00 01235778999999999999 89999999999999999999999999
Q ss_pred EecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecC------CcceEEEEecCcceeeeccccCCCCcc
Q 012799 235 CLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGH------GHWVNSLALSTEYALRTGAFDHTGKQY 307 (456)
Q Consensus 235 ~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~ 307 (456)
.+.+|.+.|..+.|+|-| +|++-+.|++|++|+..+....+.+..+ ...+..+.|+|++
T Consensus 166 vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG-------------- 231 (942)
T KOG0973|consen 166 VLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDG-------------- 231 (942)
T ss_pred eeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCc--------------
Confidence 999999999999999999 9999999999999998776676666543 2356788899984
Q ss_pred CChHHHHHHHHhhhhhccCCCCCEEEEEe----CCCcEEEEecCCCCCCccccccccccEeEEEECCC-----CC-----
Q 012799 308 SSPEEMKKAALERYNKIKGNAPERLVSGS----DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-----GQ----- 373 (456)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~-----~~----- 373 (456)
++|++.. .-.++.|.+ +.....-..+.+|..++.++.|+|. .+
T Consensus 232 ----------------------~~las~nA~n~~~~~~~Iie-R~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~ 288 (942)
T KOG0973|consen 232 ----------------------HHLASPNAVNGGKSTIAIIE-RGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTST 288 (942)
T ss_pred ----------------------CeecchhhccCCcceeEEEe-cCCceeeeeeecCCCceEEEEeChHHhccccccCCcc
Confidence 4455442 233577777 4444455668899999999999982 11
Q ss_pred -------EEEEEECCCcEEEEeCCCCeEEEEEe-cccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEE
Q 012799 374 -------WVASASFDKSIKLWNGTTGKFVAVFR-GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL 445 (456)
Q Consensus 374 -------~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 445 (456)
.+|+|+.|++|.||.....+++.... -...+|.++ +|+|||..|+
T Consensus 289 ~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~Dm---------------------------sWspdG~~Lf 341 (942)
T KOG0973|consen 289 QPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDM---------------------------SWSPDGFSLF 341 (942)
T ss_pred CCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeee---------------------------eEcCCCCeEE
Confidence 57889999999999998888766543 334578888 9999999999
Q ss_pred EeeCCCceEE
Q 012799 446 SGSKDSTLKV 455 (456)
Q Consensus 446 s~s~Dg~v~i 455 (456)
.+|.||+|.+
T Consensus 342 acS~DGtV~~ 351 (942)
T KOG0973|consen 342 ACSLDGTVAL 351 (942)
T ss_pred EEecCCeEEE
Confidence 9999999975
No 72
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=4.6e-31 Score=243.19 Aligned_cols=266 Identities=17% Similarity=0.249 Sum_probs=205.7
Q ss_pred CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce-------------eEEecCCCCEEEEEEcC-CCCEEEEEeCCC
Q 012799 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-------------FKCTGHKNWVLCIAWSA-DGKHLVSGSKAG 172 (456)
Q Consensus 107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg 172 (456)
|-..|.....++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 3445666666777666677766666667765433211 24678999999999999 889999999999
Q ss_pred eEEEEeCCCCCC------ccccccCcccceEEEEecccccCCC-CCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEE
Q 012799 173 ELQCWDPQTGKP------SGNPLSGHKKWITGISWEPVHLNAP-CRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTC 245 (456)
Q Consensus 173 ~i~vwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 245 (456)
+|++||+.++.. ....+.+|...|.+++|+| + +++|++++.|+.|++||+++++.+..+.+|...|.+
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P-----~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~s 173 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHP-----SAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITS 173 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCc-----CCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEE
Confidence 999999976532 1224678999999999999 4 368999999999999999999999999999999999
Q ss_pred EEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcc-eEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhh
Q 012799 246 VKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHW-VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK 323 (456)
Q Consensus 246 ~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (456)
++|+|++ .|++++.|+.|++||+++++.+..+..|... ...+.|.++
T Consensus 174 la~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~------------------------------- 222 (493)
T PTZ00421 174 LEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKR------------------------------- 222 (493)
T ss_pred EEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCC-------------------------------
Confidence 9999999 8999999999999999999999888887654 345566665
Q ss_pred ccCCCCCEEEEEe----CCCcEEEEecCCCCCCccccccc-cccEeEEEECCCCCEEEEEE-CCCcEEEEeCCCCeEEEE
Q 012799 324 IKGNAPERLVSGS----DDFTMFLWEPAVSKQPKTRMTGH-QQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAV 397 (456)
Q Consensus 324 ~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~ 397 (456)
...+++++ .|+.|++||++....+......+ ...+....|++++++|++|+ .||.|++||+.+++++..
T Consensus 223 -----~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 223 -----KDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred -----CCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 23355443 57999999998766555443323 34566678999999999887 599999999999988776
Q ss_pred Eec-ccccEEEEEeeee
Q 012799 398 FRG-HVGPVYQIRFELI 413 (456)
Q Consensus 398 ~~~-~~~~v~~i~~~~~ 413 (456)
... +..++..++|.+.
T Consensus 298 ~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 298 SSYSSVEPHKGLCMMPK 314 (493)
T ss_pred eeccCCCCCcceEeccc
Confidence 543 3445666655443
No 73
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-32 Score=220.45 Aligned_cols=289 Identities=24% Similarity=0.387 Sum_probs=247.5
Q ss_pred ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 012799 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (456)
Q Consensus 98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 177 (456)
.+.++.|.||.+.|..++.......+.+++.|.+.+||.++++.++.++.+|.+.|++++|++.+.++++++.|++.+||
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence 34678899999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred eC------CCC--------C-------------------------CccccccCcccceEEEEecccccCCCCCEEEEEeC
Q 012799 178 DP------QTG--------K-------------------------PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK 218 (456)
Q Consensus 178 d~------~~~--------~-------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~ 218 (456)
.. ... + .....+.+|...|.+..|.. .|+.+++++.
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-----gg~Q~vTaSW 292 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-----GGQQMVTASW 292 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-----Ccceeeeeec
Confidence 72 110 0 00113567888899999988 8899999999
Q ss_pred CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCC-eEEEEeecCCcceEEEEecCcceee
Q 012799 219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALR 296 (456)
Q Consensus 219 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~ 296 (456)
|.+..+||++++..+..+.+|....+.++-+|.. .+++++.|.+.++||++.. ..+..|++|...|+++.|..+
T Consensus 293 DRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d---- 368 (481)
T KOG0300|consen 293 DRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD---- 368 (481)
T ss_pred cccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC----
Confidence 9999999999999999999999999999999988 7888999999999999853 356778999999999999875
Q ss_pred eccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEE
Q 012799 297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA 376 (456)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 376 (456)
+.+++|++|.+|++||+++...++..+. ..++++.++++..+..|+
T Consensus 369 ---------------------------------d~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIA 414 (481)
T KOG0300|consen 369 ---------------------------------DRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIA 414 (481)
T ss_pred ---------------------------------CceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEE
Confidence 4589999999999999999888777665 367899999999888999
Q ss_pred EEECCCcEEEEeCCCCeEEE----EEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCC--CeEEEeeCC
Q 012799 377 SASFDKSIKLWNGTTGKFVA----VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS--RLLLSGSKD 450 (456)
Q Consensus 377 s~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~s~s~D 450 (456)
.-..+..|++||++..++-. .-.+|...|.++ +|..+- .-|+++|-|
T Consensus 415 iPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~---------------------------AW~eehp~cnLftcGFD 467 (481)
T KOG0300|consen 415 IPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCC---------------------------AWLEEHPACNLFTCGFD 467 (481)
T ss_pred eccCCceEEEEecCCCccccCCcccccccceeeeee---------------------------eccccCccccccccccc
Confidence 98888999999986544322 335899999999 776543 468889999
Q ss_pred CceEEC
Q 012799 451 STLKVT 456 (456)
Q Consensus 451 g~v~iW 456 (456)
..+.=|
T Consensus 468 R~v~gW 473 (481)
T KOG0300|consen 468 RMVAGW 473 (481)
T ss_pred ceeeee
Confidence 887666
No 74
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=4.6e-32 Score=232.89 Aligned_cols=290 Identities=23% Similarity=0.370 Sum_probs=233.0
Q ss_pred cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc----ceeEEe-cCCCCEEEEEEcCCCCEEEEEeCCCe
Q 012799 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT----PMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGE 173 (456)
Q Consensus 99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~----~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~ 173 (456)
.+-..|++|+..|.++++.|.|..|++|+.|.+|++||+.... ..+.+. .....|.+++|++.|..|++.+....
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 4556789999999999999999999999999999999987532 122222 23457999999999999998888889
Q ss_pred EEEEeCCCCCCcc-----------ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE-EEEe-----
Q 012799 174 LQCWDPQTGKPSG-----------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICL----- 236 (456)
Q Consensus 174 i~vwd~~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~----- 236 (456)
.+|+|-....... ....+|...+++.+|+|. +...|++++.||++++||++..+. ...+
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~----~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPD----NKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccC----cccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence 9999965433211 135789999999999995 456899999999999999976432 2222
Q ss_pred cCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeE---EEEeecCCc--ceEEEEecCcceeeeccccCCCCccCCh
Q 012799 237 SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKL---IRELKGHGH--WVNSLALSTEYALRTGAFDHTGKQYSSP 310 (456)
Q Consensus 237 ~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (456)
.+..-+++.++|++++ .+++|+.||.|.+|+...... ...-..|.. .|+++.|+++
T Consensus 314 ~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d------------------ 375 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD------------------ 375 (641)
T ss_pred CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc------------------
Confidence 2334578999999999 899999999999999865322 222234555 8999999998
Q ss_pred HHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccccccc--ccEeEEEECCCCCEEEEEEC------CC
Q 012799 311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ--QLVNHVYFSPDGQWVASASF------DK 382 (456)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~s~~~------dg 382 (456)
+++|++-+.|+++++||++..++++....+-. .+-+.++|||+.++|++|+. .|
T Consensus 376 ------------------g~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g 437 (641)
T KOG0772|consen 376 ------------------GNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAG 437 (641)
T ss_pred ------------------cchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCc
Confidence 67799999999999999999888877665433 34678999999999999863 47
Q ss_pred cEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 383 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i 455 (456)
.+.+||..+.+.++.+.-....|..+ .|+|.-+.|+.|+.||+++|
T Consensus 438 ~L~f~d~~t~d~v~ki~i~~aSvv~~---------------------------~WhpkLNQi~~gsgdG~~~v 483 (641)
T KOG0772|consen 438 TLFFFDRMTLDTVYKIDISTASVVRC---------------------------LWHPKLNQIFAGSGDGTAHV 483 (641)
T ss_pred eEEEEeccceeeEEEecCCCceEEEE---------------------------eecchhhheeeecCCCceEE
Confidence 89999999999998888777777777 89999999999999999987
No 75
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.8e-32 Score=216.24 Aligned_cols=272 Identities=19% Similarity=0.284 Sum_probs=217.6
Q ss_pred CCcccEEEEEECC-CCCeEEEEECCCcEEEEeCCCC-cce-eEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 012799 106 GHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-TPM-FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (456)
Q Consensus 106 ~h~~~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~~-~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 182 (456)
.-.+.|.+++||| ...++++++.||+||+|+++.. ... +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3578999999999 5567778999999999999863 322 344579999999999999999999999999999999999
Q ss_pred CCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCc
Q 012799 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCT 262 (456)
Q Consensus 183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~ 262 (456)
+.. ....|..+|..+.|-+.. .-..|++|+.|++|+.||.+...++.++. -...+.++..-.. +++++..++.
T Consensus 105 Q~~--~v~~Hd~pvkt~~wv~~~---~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~~p-m~vVata~r~ 177 (347)
T KOG0647|consen 105 QVS--QVAAHDAPVKTCHWVPGM---NYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVLYP-MAVVATAERH 177 (347)
T ss_pred Cee--eeeecccceeEEEEecCC---CcceeEecccccceeecccCCCCeeeeee-ccceeeehhccCc-eeEEEecCCc
Confidence 765 478899999999998732 23589999999999999999998888775 3456666665433 8889999999
Q ss_pred EEEEECCCCeEEEE-ee-cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCc
Q 012799 263 IKVWETTQGKLIRE-LK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (456)
Q Consensus 263 i~iwd~~~~~~~~~-~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 340 (456)
|.+|+++++..... +. ...-.+++++...+ .+..+.|+-+|.
T Consensus 178 i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d------------------------------------~~~~alGsiEGr 221 (347)
T KOG0647|consen 178 IAVYNLENPPTEFKRIESPLKWQTRCVACFQD------------------------------------KDGFALGSIEGR 221 (347)
T ss_pred EEEEEcCCCcchhhhhcCcccceeeEEEEEec------------------------------------CCceEeeeecce
Confidence 99999987643221 11 13345778887776 444699999999
Q ss_pred EEEEecCCCC-CCcccccccc---------ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799 341 MFLWEPAVSK-QPKTRMTGHQ---------QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410 (456)
Q Consensus 341 i~iwd~~~~~-~~~~~~~~~~---------~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 410 (456)
+.+..+.... ..-..++.|. ..|++++|+|.-..|+|++.||++.+||-.....+...+.|..+|++.
T Consensus 222 v~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc-- 299 (347)
T KOG0647|consen 222 VAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCC-- 299 (347)
T ss_pred EEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCcccee--
Confidence 9998876642 2223344444 358899999988899999999999999988888888888999999999
Q ss_pred eeeeeecCCCCceeeecccccccceeEecCCCeEEEe
Q 012799 411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG 447 (456)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~ 447 (456)
+|+.+|.++|-+
T Consensus 300 -------------------------~fn~~G~ifaYA 311 (347)
T KOG0647|consen 300 -------------------------SFNRNGSIFAYA 311 (347)
T ss_pred -------------------------EecCCCCEEEEE
Confidence 788899887754
No 76
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.3e-31 Score=220.22 Aligned_cols=277 Identities=27% Similarity=0.470 Sum_probs=231.2
Q ss_pred hhHhhcCcCcccEEEEEEeccceEEEe-ecccccccccCCcccEEEEEECCCC---CeEEEEECCCcEEEEeCCCCcce-
Q 012799 69 SYLEKHKVSVEKVLSIVYQPQAVFRIR-PVNRCSATIAGHTEAVLSVAFSPDG---RQLASGSGDTTVRLWDLNTQTPM- 143 (456)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~h~~~V~~~~~s~~~---~~l~~~~~d~~v~vwd~~~~~~~- 143 (456)
++...-+...+-++.-.|+ ...++| ..+++..++.||.++|.+++|.-.. ..|++++.|.++++|.++.+...
T Consensus 106 DWVSsv~~~~~~IltgsYD--g~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~ 183 (423)
T KOG0313|consen 106 DWVSSVKGASKWILTGSYD--GTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV 183 (423)
T ss_pred hhhhhhcccCceEEEeecC--CeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh
Confidence 3444455556667777775 445566 4678999999999999988886433 35999999999999998876533
Q ss_pred ---eEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC------------------------CccccccCcccce
Q 012799 144 ---FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK------------------------PSGNPLSGHKKWI 196 (456)
Q Consensus 144 ---~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~------------------------~~~~~~~~~~~~v 196 (456)
....||...|.+++..++|..+++|+.|..|.+|+..+.. .....+.+|..+|
T Consensus 184 ~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~V 263 (423)
T KOG0313|consen 184 KALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPV 263 (423)
T ss_pred hHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccce
Confidence 3445999999999999999999999999999999932110 0112467899999
Q ss_pred EEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCe---
Q 012799 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK--- 272 (456)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~--- 272 (456)
.++.|.+ ...+++++.|.+|+.||+.++..+..+.+ ...+.|+.++|.. +|++|+.|..+++||.+++.
T Consensus 264 s~V~w~d------~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 264 SSVVWSD------ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred eeEEEcC------CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 9999986 35899999999999999999999888764 5678999999977 99999999999999999863
Q ss_pred EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC
Q 012799 273 LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP 352 (456)
Q Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 352 (456)
...++.+|...|.++.|+|.. ...|++|+.|+++++||++....+
T Consensus 337 v~~s~~gH~nwVssvkwsp~~-----------------------------------~~~~~S~S~D~t~klWDvRS~k~p 381 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTN-----------------------------------EFQLVSGSYDNTVKLWDVRSTKAP 381 (423)
T ss_pred eEEeeecchhhhhheecCCCC-----------------------------------ceEEEEEecCCeEEEEEeccCCCc
Confidence 457788999999999999984 446999999999999999999989
Q ss_pred ccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (456)
Q Consensus 353 ~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 390 (456)
+..+.+|...|.++.|+ ++.+|++|+.|.+++|+...
T Consensus 382 lydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 382 LYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 99999999999999997 56789999999999998743
No 77
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=100.00 E-value=1.3e-31 Score=238.04 Aligned_cols=277 Identities=25% Similarity=0.428 Sum_probs=236.6
Q ss_pred cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce--eEEecCCCCEEE-EEEcC-CCCEEEEEeCCCeE
Q 012799 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM--FKCTGHKNWVLC-IAWSA-DGKHLVSGSKAGEL 174 (456)
Q Consensus 99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~--~~~~~~~~~v~~-~~~~~-~~~~l~s~~~dg~i 174 (456)
+..+++.||...|..+++.+.. .++++|.||++++|+-..++-+ ..+.+|.+.|.+ +++-+ ++-.+++|+.|++|
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 3467899999999999987654 6899999999999997655433 346678888877 88875 55579999999999
Q ss_pred EEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeE
Q 012799 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVI 254 (456)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l 254 (456)
.+|......+.. .+.+|...|.++.... ++. +++|+.|.++++|.. +++...+.+|...|.+++..|++.+
T Consensus 84 ~v~~~~~~~P~~-~LkgH~snVC~ls~~~-----~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~ 154 (745)
T KOG0301|consen 84 IVFKLSQAEPLY-TLKGHKSNVCSLSIGE-----DGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPENTY 154 (745)
T ss_pred EEEecCCCCchh-hhhccccceeeeecCC-----cCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCCcE
Confidence 999999988877 7999999999998655 444 999999999999975 4556668999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799 255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (456)
Q Consensus 255 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (456)
++|+.|.+|++|.- ++.++++.+|.+.|+.+++-++ ..+++
T Consensus 155 vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~-------------------------------------~~flS 195 (745)
T KOG0301|consen 155 VTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-------------------------------------SHFLS 195 (745)
T ss_pred EeccCcceeeeccC--CchhhhhccchhheeeeEEecC-------------------------------------CCeEe
Confidence 99999999999975 7899999999999999998875 23899
Q ss_pred EeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeee
Q 012799 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIY 414 (456)
Q Consensus 335 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 414 (456)
++.||.|++|++ ....+..+.+|+..|.++...+++..++++++|++++||+.. ++.+.+....-.|+++
T Consensus 196 csNDg~Ir~w~~--~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa------ 265 (745)
T KOG0301|consen 196 CSNDGSIRLWDL--DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSA------ 265 (745)
T ss_pred ecCCceEEEEec--cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEE------
Confidence 999999999997 344666788999999999988888999999999999999965 8888888777789988
Q ss_pred eecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.+-++| -+++|++||.||||
T Consensus 266 ---------------------~~L~Ng-DIvvg~SDG~VrVf 285 (745)
T KOG0301|consen 266 ---------------------KVLLNG-DIVVGGSDGRVRVF 285 (745)
T ss_pred ---------------------EEeeCC-CEEEeccCceEEEE
Confidence 556666 47788999999997
No 78
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1e-30 Score=210.99 Aligned_cols=269 Identities=21% Similarity=0.263 Sum_probs=221.5
Q ss_pred CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 012799 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (456)
Q Consensus 107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 186 (456)
-.+.|+++.|+|.+..|++++.||++++|++........+. |..++.+.+|.+ ...+++|+.||.|+.+|++++...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~- 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED- 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-
Confidence 36789999999999999999999999999999876666655 999999999985 568999999999999999998876
Q ss_pred ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEE
Q 012799 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVW 266 (456)
Q Consensus 187 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iw 266 (456)
.+..|...|.++.+.+ ....+++|++|++|++||.+.......+.. ...|.++....+ .|++|+.+..+.+|
T Consensus 89 -~igth~~~i~ci~~~~-----~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~g~-~LvVg~~~r~v~iy 160 (323)
T KOG1036|consen 89 -QIGTHDEGIRCIEYSY-----EVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVSGN-RLVVGTSDRKVLIY 160 (323)
T ss_pred -eeccCCCceEEEEeec-----cCCeEEEcccCccEEEEecccccccccccc-CceEEEEeccCC-EEEEeecCceEEEE
Confidence 4788999999999997 567899999999999999998665555543 348888888755 89999999999999
Q ss_pred ECCCCeEEEEee--cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEE
Q 012799 267 ETTQGKLIRELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW 344 (456)
Q Consensus 267 d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 344 (456)
|+++........ .-.-.+.++++-|+ +.-+++++-||.|.+=
T Consensus 161 DLRn~~~~~q~reS~lkyqtR~v~~~pn------------------------------------~eGy~~sSieGRVavE 204 (323)
T KOG1036|consen 161 DLRNLDEPFQRRESSLKYQTRCVALVPN------------------------------------GEGYVVSSIEGRVAVE 204 (323)
T ss_pred EcccccchhhhccccceeEEEEEEEecC------------------------------------CCceEEEeecceEEEE
Confidence 999865443222 23456788888885 3448899999998875
Q ss_pred ecCCCC---CCcccccccc---------ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeee
Q 012799 345 EPAVSK---QPKTRMTGHQ---------QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412 (456)
Q Consensus 345 d~~~~~---~~~~~~~~~~---------~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 412 (456)
.+.... .....++.|. .+|++++|+|-...||||+.||.|.+||+.+.+.+..+......|.++
T Consensus 205 ~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~sl---- 280 (323)
T KOG1036|consen 205 YFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSL---- 280 (323)
T ss_pred ccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEE----
Confidence 544431 2233344443 379999999998899999999999999999999999998887889888
Q ss_pred eeeecCCCCceeeecccccccceeEecCCCeEEEeeC
Q 012799 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449 (456)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~ 449 (456)
+|+.||..||.|+.
T Consensus 281 -----------------------sfs~dG~~LAia~s 294 (323)
T KOG1036|consen 281 -----------------------SFSMDGSLLAIASS 294 (323)
T ss_pred -----------------------EeccCCCeEEEEec
Confidence 88999999999874
No 79
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-31 Score=233.31 Aligned_cols=243 Identities=30% Similarity=0.507 Sum_probs=217.1
Q ss_pred CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEec-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 012799 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP 184 (456)
Q Consensus 106 ~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 184 (456)
-+.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|+ +..+.+|+.|+.|..+|++..+.
T Consensus 215 ~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~ 292 (484)
T KOG0305|consen 215 FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH 292 (484)
T ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh
Confidence 3489999999999999999999999999999999999999988 99999999997 67899999999999999999887
Q ss_pred ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--eEEEEe--CC
Q 012799 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGS--QD 260 (456)
Q Consensus 185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~--~d 260 (456)
....+.+|...|..+.|++ ++.++++|+.|+.+.|||.....+...+..|.+.|.+++|+|-. .|++|+ .|
T Consensus 293 ~~~~~~~H~qeVCgLkws~-----d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D 367 (484)
T KOG0305|consen 293 VVSTLQGHRQEVCGLKWSP-----DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSAD 367 (484)
T ss_pred hhhhhhcccceeeeeEECC-----CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcc
Confidence 6656889999999999999 99999999999999999999889999999999999999999944 888764 59
Q ss_pred CcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEE-EEeCCC
Q 012799 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV-SGSDDF 339 (456)
Q Consensus 261 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg 339 (456)
+.|++||..+++.+..+. ....|.++.|++.+. +++. .|..++
T Consensus 368 ~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~k-----------------------------------Ei~sthG~s~n 411 (484)
T KOG0305|consen 368 RCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYK-----------------------------------ELLSTHGYSEN 411 (484)
T ss_pred cEEEEEEcCCCcEecccc-cCCceeeEEEcCCCC-----------------------------------EEEEecCCCCC
Confidence 999999999999988887 577899999999852 2222 345677
Q ss_pred cEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCC
Q 012799 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG 392 (456)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 392 (456)
.|.||+... ......+.+|...|..++++|||..+++|+.|.++++|++-..
T Consensus 412 ~i~lw~~ps-~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 412 QITLWKYPS-MKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred cEEEEeccc-cceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 899999766 4566778899999999999999999999999999999998764
No 80
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=2.4e-31 Score=245.21 Aligned_cols=247 Identities=33% Similarity=0.507 Sum_probs=219.0
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 180 (456)
...|.||.+.|.++++..-+..|++|+.|.++++||..++++...+.+|...|.++.. .+.++++|+.|.+|++|+++
T Consensus 242 ~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~ 319 (537)
T KOG0274|consen 242 LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVT 319 (537)
T ss_pred EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEecc
Confidence 3449999999999999987889999999999999999999999999999999999997 45588889999999999999
Q ss_pred CCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCC
Q 012799 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQD 260 (456)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d 260 (456)
++..+. .+.+|..+|.++.. ++.++++|+.|++|++||+.+++++..+.+|...|.++.+.+...+++|+.|
T Consensus 320 n~~~l~-l~~~h~~~V~~v~~-------~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D 391 (537)
T KOG0274|consen 320 NGACLN-LLRGHTGPVNCVQL-------DEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLD 391 (537)
T ss_pred CcceEE-EeccccccEEEEEe-------cCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeec
Confidence 998876 56669999999998 4589999999999999999999999999999999999999885699999999
Q ss_pred CcEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC
Q 012799 261 CTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339 (456)
Q Consensus 261 g~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 339 (456)
++|++||+++. +++..+.+|..-+..+.+. ++++++++.|+
T Consensus 392 ~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--------------------------------------~~~Lvs~~aD~ 433 (537)
T KOG0274|consen 392 TTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR--------------------------------------DNFLVSSSADG 433 (537)
T ss_pred cceEeecCCchhhhhhhhcCCcccccccccc--------------------------------------cceeEeccccc
Confidence 99999999999 8999999998888666554 45699999999
Q ss_pred cEEEEecCCCCCCcccccc-ccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEE
Q 012799 340 TMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF 398 (456)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 398 (456)
+|++||....+ ....+.+ |...|..+++. ...+++++.||.+++||++++++...+
T Consensus 434 ~Ik~WD~~~~~-~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 434 TIKLWDAEEGE-CLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cEEEeecccCc-eeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 99999966554 4555555 67889888886 457888999999999999999988766
No 81
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.2e-29 Score=195.85 Aligned_cols=285 Identities=24% Similarity=0.317 Sum_probs=229.4
Q ss_pred CcccEEEEEECCCCCeEEEEECCCcEEEEeCCC------C-----cc-e---eEEecCCCCEEEEEEcCCCCEEEEEeCC
Q 012799 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT------Q-----TP-M---FKCTGHKNWVLCIAWSADGKHLVSGSKA 171 (456)
Q Consensus 107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~------~-----~~-~---~~~~~~~~~v~~~~~~~~~~~l~s~~~d 171 (456)
.+..|.+++|+|.|.+.|.|+..++.+|..... + ++ . +.-+.|.+.|+|.+|+|+|.+|++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 467899999999999999999999999885432 1 11 1 2234689999999999999999999999
Q ss_pred CeEEEEeCCCCCCc----cccccCcccceEEEEecccccCCCCCEEEEEeC-CCcEEEEECCCCeEEEEecCcCccEEEE
Q 012799 172 GELQCWDPQTGKPS----GNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVICLSGHTLAVTCV 246 (456)
Q Consensus 172 g~i~vwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 246 (456)
.+|++.-.+..... ...+.-|.+.|..++|.... ...+..|++++. |..|++-|...++....+.+|.+.|.++
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~-~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal 189 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDP-ESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL 189 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCC-CcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE
Confidence 99999866543221 11356689999999997532 225566776654 6788888999999999999999999876
Q ss_pred EeCCCCeEEEEeCCCcEEEEECCCCeEEEEeec-------CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHh
Q 012799 247 KWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG-------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319 (456)
Q Consensus 247 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (456)
---..-++++|+.|.+|++||++-..++.++.. ..+.|.++++.|.
T Consensus 190 yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdps--------------------------- 242 (350)
T KOG0641|consen 190 YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS--------------------------- 242 (350)
T ss_pred EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCC---------------------------
Confidence 432223999999999999999998888877642 2356888898887
Q ss_pred hhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCC----eEE
Q 012799 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG----KFV 395 (456)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~----~~~ 395 (456)
+..+++|..|....+||++.+ .+++.+..|...|.++.|||...|+.+++.|..|++=|+... -.+
T Consensus 243 ---------grll~sg~~dssc~lydirg~-r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~ 312 (350)
T KOG0641|consen 243 ---------GRLLASGHADSSCMLYDIRGG-RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPI 312 (350)
T ss_pred ---------cceeeeccCCCceEEEEeeCC-ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCce
Confidence 566999999999999998765 467778899999999999999999999999999999998631 124
Q ss_pred EEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 396 AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 396 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.....|.+.+..+ .|+|..-.+++.+.|.++.+|
T Consensus 313 ~vv~ehkdk~i~~---------------------------rwh~~d~sfisssadkt~tlw 346 (350)
T KOG0641|consen 313 MVVAEHKDKAIQC---------------------------RWHPQDFSFISSSADKTATLW 346 (350)
T ss_pred EEEEeccCceEEE---------------------------EecCccceeeeccCcceEEEe
Confidence 4556788888777 899999999999999999999
No 82
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=9e-30 Score=235.53 Aligned_cols=251 Identities=18% Similarity=0.267 Sum_probs=191.9
Q ss_pred EECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCCc-------cccccCcccceE
Q 012799 126 GSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKPS-------GNPLSGHKKWIT 197 (456)
Q Consensus 126 ~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~-------~~~~~~~~~~v~ 197 (456)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +++|++|+.||+|++||+.++... ...+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 567889999999888888889999999999999996 789999999999999999865321 113578999999
Q ss_pred EEEecccccCCCCCE-EEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEE
Q 012799 198 GISWEPVHLNAPCRR-FVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIR 275 (456)
Q Consensus 198 ~~~~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~ 275 (456)
+++|+| ++.. +++++.|+.|++||+++++....+. |...|.+++|+++| .|++++.|+.|++||+++++.+.
T Consensus 130 sVaf~P-----~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 130 IIDWNP-----MNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred EEEECC-----CCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE
Confidence 999999 6655 5789999999999999998877775 56789999999999 88888899999999999999999
Q ss_pred EeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC----cEEEEecCCCCC
Q 012799 276 ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF----TMFLWEPAVSKQ 351 (456)
Q Consensus 276 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~ 351 (456)
.+.+|.+.+....+.... .++++.++++++.|+ .|++||++....
T Consensus 204 tl~gH~g~~~s~~v~~~~-------------------------------fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~ 252 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDG-------------------------------LGGDDNYILSTGFSKNNMREMKLWDLKNTTS 252 (568)
T ss_pred EEecccCCceeEEEEeee-------------------------------EcCCCCEEEEEEcCCCCccEEEEEECCCCCC
Confidence 998888765444332110 001255688877664 799999986555
Q ss_pred Cccccc--cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEE--EEEecccccEEEEEeeeee
Q 012799 352 PKTRMT--GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV--AVFRGHVGPVYQIRFELIY 414 (456)
Q Consensus 352 ~~~~~~--~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~i~~~~~~ 414 (456)
++.... .+.+.+......++|.++++|+.|+.|++|++..+... ..+. +..+..+++|.+..
T Consensus 253 pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 253 ALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred ceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence 554432 23333444444556889999999999999999877532 2222 45677777554433
No 83
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=5.9e-29 Score=213.34 Aligned_cols=368 Identities=20% Similarity=0.270 Sum_probs=267.3
Q ss_pred HHHHhhcCCCCCceeEEecCeeeeechhhhHhhcCcCcccEEEEEEeccceEEEe-ecccccccccCCcccEEEEEECCC
Q 012799 41 IVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIR-PVNRCSATIAGHTEAVLSVAFSPD 119 (456)
Q Consensus 41 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~h~~~V~~~~~s~~ 119 (456)
+-..+.....++.+.+.+++..++.++.-. +..++.|.-..+..+. -..+..+.+.||++.|.|++.+||
T Consensus 45 ~d~~~P~~kl~LewvygYRG~dcR~Nly~l---------ptgE~vyfvA~V~Vl~n~ee~~Qr~y~GH~ddikc~~vHPd 115 (626)
T KOG2106|consen 45 ADVELPTEKLKLEWVYGYRGVDCRNNLYLL---------PTGELVYFVAAVGVLYNWEERSQRHYLGHNDDIKCMAVHPD 115 (626)
T ss_pred hhccCcccCceeEEEEeecceeeeceeEEc---------cCccEEEEeccEEEEEeehhhhcccccCCCCceEEEeecCC
Confidence 334555666778899999999998877432 2223333333322222 233456778899999999999999
Q ss_pred CCeEEEEECCC--------cEEEEeCCCCcceeEEecCCCCEEEEEEcC--CCCEEEEE--eCCCeEEEEeCCCCCCccc
Q 012799 120 GRQLASGSGDT--------TVRLWDLNTQTPMFKCTGHKNWVLCIAWSA--DGKHLVSG--SKAGELQCWDPQTGKPSGN 187 (456)
Q Consensus 120 ~~~l~~~~~d~--------~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~--~~dg~i~vwd~~~~~~~~~ 187 (456)
.-.+++|-..| .+++||..+-..+..+......|.|++|++ .|.+++.. +.+..+.+||++.+....
T Consensus 116 ri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~- 194 (626)
T KOG2106|consen 116 RIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLG- 194 (626)
T ss_pred ceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccC-
Confidence 98888775444 599999888887888878888999999998 45566654 345679999999877665
Q ss_pred cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe---cC-cCccEEEEEeCCCCeEEEEeCCCcE
Q 012799 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SG-HTLAVTCVKWGGDGVIYTGSQDCTI 263 (456)
Q Consensus 188 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~-~~~~v~~~~~~~~~~l~~~~~dg~i 263 (456)
.....+..|....|+|. +.+.+++.+ .|.+.+|+.+.+...... +. ....|.|++|.++|-+++|..+|.|
T Consensus 195 ~vk~sne~v~~a~FHPt----d~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i 269 (626)
T KOG2106|consen 195 PVKTSNEVVFLATFHPT----DPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNI 269 (626)
T ss_pred cceeccceEEEEEeccC----CCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceE
Confidence 34556677899999994 334555555 489999999887665443 22 2467999999999999999999999
Q ss_pred EEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHH-----HHh-------------------
Q 012799 264 KVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA-----ALE------------------- 319 (456)
Q Consensus 264 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~------------------- 319 (456)
.||+..+.+..+....|.+.|.+++.-.++.+.++..|.....|.......+. ...
T Consensus 270 ~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN 349 (626)
T KOG2106|consen 270 LIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRN 349 (626)
T ss_pred EEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccc
Confidence 99999988888887799999999999999998887766655444421111000 000
Q ss_pred ---------------------hhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEE
Q 012799 320 ---------------------RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA 378 (456)
Q Consensus 320 ---------------------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~ 378 (456)
.+.....++.+.+++++.|+.+++|+ ..+....+ .-..++.++.|+|.| .+|.|
T Consensus 350 ~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~--~~~d~~~~~~fhpsg-~va~G 424 (626)
T KOG2106|consen 350 FILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK--IIEDPAECADFHPSG-VVAVG 424 (626)
T ss_pred eEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE--EecCceeEeeccCcc-eEEEe
Confidence 00011345566788888888888888 22222222 234567888888888 88888
Q ss_pred ECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 379 SFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 379 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
...|...+.|.++..++..-.. ..+++.+ +|+|+|.+||.|+.|+.|+|.
T Consensus 425 t~~G~w~V~d~e~~~lv~~~~d-~~~ls~v---------------------------~ysp~G~~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 425 TATGRWFVLDTETQDLVTIHTD-NEQLSVV---------------------------RYSPDGAFLAVGSHDNHIYIY 474 (626)
T ss_pred eccceEEEEecccceeEEEEec-CCceEEE---------------------------EEcCCCCEEEEecCCCeEEEE
Confidence 8888888888888666665554 7788888 889999999999999999873
No 84
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.98 E-value=1.3e-29 Score=229.77 Aligned_cols=300 Identities=19% Similarity=0.315 Sum_probs=240.0
Q ss_pred eEEEee--cccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCE-EEE
Q 012799 91 VFRIRP--VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH-LVS 167 (456)
Q Consensus 91 ~~~~~~--~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s 167 (456)
.+.+|. .++.+.+++++...|+++.-+|--..+|.|..+|+|.++++..++.+.+++...+.|+.++|.-||+. +++
T Consensus 183 ~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las 262 (910)
T KOG1539|consen 183 RLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLAS 262 (910)
T ss_pred cEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEe
Confidence 334443 45688999999999999999999999999999999999999999999999855699999999999875 556
Q ss_pred EeCCCeEEEEeCCCCCCcccccc----------------------------------------------CcccceEEEEe
Q 012799 168 GSKAGELQCWDPQTGKPSGNPLS----------------------------------------------GHKKWITGISW 201 (456)
Q Consensus 168 ~~~dg~i~vwd~~~~~~~~~~~~----------------------------------------------~~~~~v~~~~~ 201 (456)
|+..|.+.+||++..+....... +|..+..++.|
T Consensus 263 ~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irf 342 (910)
T KOG1539|consen 263 GRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRF 342 (910)
T ss_pred ccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheee
Confidence 66679999999986553222222 22222222322
Q ss_pred cc------------------------------------------------------------------------------
Q 012799 202 EP------------------------------------------------------------------------------ 203 (456)
Q Consensus 202 ~~------------------------------------------------------------------------------ 203 (456)
.-
T Consensus 343 y~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~ 422 (910)
T KOG1539|consen 343 YGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKR 422 (910)
T ss_pred eccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcc
Confidence 21
Q ss_pred -------------------------------cccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe---cCcCccEEEEEeC
Q 012799 204 -------------------------------VHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SGHTLAVTCVKWG 249 (456)
Q Consensus 204 -------------------------------~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~ 249 (456)
...+..|++.+.|...|.|-+|++.+|-....+ ..|..+|+.++.+
T Consensus 423 ~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D 502 (910)
T KOG1539|consen 423 SAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVD 502 (910)
T ss_pred eEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEec
Confidence 112235666777777888888888888777777 4799999999999
Q ss_pred CCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCC
Q 012799 250 GDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (456)
Q Consensus 250 ~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (456)
.-+ .+++++.+|.+.+||......+..+. -...+..+..+..
T Consensus 503 ~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~------------------------------------ 545 (910)
T KOG1539|consen 503 GTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRV------------------------------------ 545 (910)
T ss_pred CCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeeh------------------------------------
Confidence 877 89999999999999999888777766 3445666666554
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408 (456)
Q Consensus 329 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 408 (456)
...++.+..|-.|+++|..+ ...++.+.+|.+.|++++|||||++|++++.|++|++||+.++.++..+. -..+..++
T Consensus 546 s~l~a~~~ddf~I~vvD~~t-~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sl 623 (910)
T KOG1539|consen 546 SDLLAIALDDFSIRVVDVVT-RKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSL 623 (910)
T ss_pred hhhhhhhcCceeEEEEEchh-hhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceee
Confidence 34588999999999999654 45677789999999999999999999999999999999999999998776 45677778
Q ss_pred EeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCC-CceEEC
Q 012799 409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD-STLKVT 456 (456)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~D-g~v~iW 456 (456)
.|||+|.+|||...| .-|++|
T Consensus 624 ---------------------------s~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 624 ---------------------------SFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred ---------------------------EECCCCCEEEEEEecCceEEEE
Confidence 889999999999998 678988
No 85
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3e-29 Score=202.97 Aligned_cols=262 Identities=19% Similarity=0.268 Sum_probs=208.9
Q ss_pred EEEEECCCcEEEEeCCC------------CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccccc
Q 012799 123 LASGSGDTTVRLWDLNT------------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS 190 (456)
Q Consensus 123 l~~~~~d~~v~vwd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 190 (456)
|++|++...|.=+++.. -.+++.+..|.+++++++. ++.++|+|+.|-+|+|||+++..... .+.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg-~ll 80 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLG-ILL 80 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhc-cee
Confidence 55666665555555432 1235667789999999998 68899999999999999999888776 677
Q ss_pred CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECC
Q 012799 191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT 269 (456)
Q Consensus 191 ~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~ 269 (456)
.|.+.|+++.|.+.. ..+.|++|+.||.|.+|+.....++..+++|.+.|+.++.+|.+ .-++.+.|+.+++||+-
T Consensus 81 ~HagsitaL~F~~~~---S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV 157 (362)
T KOG0294|consen 81 SHAGSITALKFYPPL---SKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV 157 (362)
T ss_pred ccccceEEEEecCCc---chhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhh
Confidence 899999999999833 23489999999999999999999999999999999999999999 77788999999999999
Q ss_pred CCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCC
Q 012799 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS 349 (456)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 349 (456)
+|+.-...... .....+.|+|. +++++.+..+ .|-+|.+...
T Consensus 158 ~Gr~a~v~~L~-~~at~v~w~~~------------------------------------Gd~F~v~~~~-~i~i~q~d~A 199 (362)
T KOG0294|consen 158 RGRVAFVLNLK-NKATLVSWSPQ------------------------------------GDHFVVSGRN-KIDIYQLDNA 199 (362)
T ss_pred cCccceeeccC-CcceeeEEcCC------------------------------------CCEEEEEecc-EEEEEecccH
Confidence 88765554422 22344888877 6666666654 5788876554
Q ss_pred CCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeeccc
Q 012799 350 KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMS 429 (456)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~ 429 (456)
...... .....+.++.|- ++..|++|+.|+.|.+||..++.++..+.+|...|-++.+
T Consensus 200 ~v~~~i--~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~------------------- 257 (362)
T KOG0294|consen 200 SVFREI--ENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIAS------------------- 257 (362)
T ss_pred hHhhhh--hccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEE-------------------
Confidence 322221 122446677665 5678999999999999999999999999999999999943
Q ss_pred ccccceeEecCCCeEEEeeCCCceEEC
Q 012799 430 CCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 430 ~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
--.|++.+|+|+|.||.|+||
T Consensus 258 ------~~~~~~~~lvTaSSDG~I~vW 278 (362)
T KOG0294|consen 258 ------YTNPEHEYLVTASSDGFIKVW 278 (362)
T ss_pred ------EecCCceEEEEeccCceEEEE
Confidence 336788999999999999999
No 86
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=5.5e-30 Score=201.83 Aligned_cols=242 Identities=24% Similarity=0.399 Sum_probs=207.0
Q ss_pred eEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc-ccccCcccceEEEEecccccCCCCCEEEEEeCCCcE
Q 012799 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222 (456)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i 222 (456)
..+.+|...+.+++|+.+|..|++|+.|+++.+|+++..+... ....+|.+.|..++|+|. ....|++++.|.+|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~----~~d~~atas~dk~i 89 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPK----HPDLFATASGDKTI 89 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCC----CCcceEEecCCceE
Confidence 4456899999999999999999999999999999998775432 246789999999999985 44689999999999
Q ss_pred EEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeecccc
Q 012799 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301 (456)
Q Consensus 223 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 301 (456)
++||++++++..........+ -+.|+|+| +++++..|..|.+.|.++.+.....+ ....+..++|+.+
T Consensus 90 r~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~--------- 158 (313)
T KOG1407|consen 90 RIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNS--------- 158 (313)
T ss_pred EEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCC---------
Confidence 999999999998887555554 47888888 99999999999999999987776655 3445677777754
Q ss_pred CCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECC
Q 012799 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381 (456)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d 381 (456)
++.++.....|+|.|.... .-+++..+..|.....|+.|+|+|+++|+|+.|
T Consensus 159 ---------------------------nd~Fflt~GlG~v~ILsyp-sLkpv~si~AH~snCicI~f~p~GryfA~GsAD 210 (313)
T KOG1407|consen 159 ---------------------------NDLFFLTNGLGCVEILSYP-SLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD 210 (313)
T ss_pred ---------------------------CCEEEEecCCceEEEEecc-ccccccccccCCcceEEEEECCCCceEeecccc
Confidence 4557777777999998865 456778899999999999999999999999999
Q ss_pred CcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799 382 KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 382 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i 455 (456)
..+.+||+...-+++.+..+.-+|..+ +||.||++||+||+|-.|-|
T Consensus 211 AlvSLWD~~ELiC~R~isRldwpVRTl---------------------------SFS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 211 ALVSLWDVDELICERCISRLDWPVRTL---------------------------SFSHDGRMLASASEDHFIDI 257 (313)
T ss_pred ceeeccChhHhhhheeeccccCceEEE---------------------------EeccCcceeeccCccceEEe
Confidence 999999999999999999999999999 88999999999999988754
No 87
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=2e-29 Score=232.33 Aligned_cols=227 Identities=20% Similarity=0.285 Sum_probs=180.7
Q ss_pred cccCCcccEEEEEECC-CCCeEEEEECCCcEEEEeCCCC-------cceeEEecCCCCEEEEEEcCCC-CEEEEEeCCCe
Q 012799 103 TIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-------TPMFKCTGHKNWVLCIAWSADG-KHLVSGSKAGE 173 (456)
Q Consensus 103 ~l~~h~~~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~ 173 (456)
.+.||.+.|++++|+| ++++||+|+.|++|++||+.++ .++..+.+|...|.+++|+|++ ++|++++.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999 8899999999999999999764 3567788999999999999975 79999999999
Q ss_pred EEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCcc-EEEEEeCCCC
Q 012799 174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA-VTCVKWGGDG 252 (456)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~ 252 (456)
|++||+++++... .+.+|...|.+++|+| ++..|++++.|+.|++||+++++.+..+.+|... ...+.|.+++
T Consensus 150 VrIWDl~tg~~~~-~l~~h~~~V~sla~sp-----dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~ 223 (493)
T PTZ00421 150 VNVWDVERGKAVE-VIKCHSDQITSLEWNL-----DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRK 223 (493)
T ss_pred EEEEECCCCeEEE-EEcCCCCceEEEEEEC-----CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCC
Confidence 9999999887654 5678999999999999 8999999999999999999999999888888764 4567788876
Q ss_pred -eEEEEe----CCCcEEEEECCCCe-EEEEeecCC-cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhcc
Q 012799 253 -VIYTGS----QDCTIKVWETTQGK-LIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325 (456)
Q Consensus 253 -~l~~~~----~dg~i~iwd~~~~~-~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (456)
.+++++ .|+.|++||+++.. ++.....+. ..+....++++
T Consensus 224 ~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d--------------------------------- 270 (493)
T PTZ00421 224 DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDED--------------------------------- 270 (493)
T ss_pred CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCC---------------------------------
Confidence 666544 47899999998754 333333222 33444456665
Q ss_pred CCCCCEEEEEe-CCCcEEEEecCCCCCCccccccccccEeEEEECCC
Q 012799 326 GNAPERLVSGS-DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD 371 (456)
Q Consensus 326 ~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~ 371 (456)
+..+++++ .|+.|++||+............+..++..++|.|.
T Consensus 271 ---~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 271 ---TNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred ---CCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 45577766 59999999988765333322345566788888884
No 88
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-28 Score=199.94 Aligned_cols=245 Identities=20% Similarity=0.271 Sum_probs=202.3
Q ss_pred cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC--
Q 012799 141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-- 218 (456)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-- 218 (456)
++.+.+......|.++.|+++|.++++++.|..+++||..+++.+. .+..++-.+..++|.. ....++.++.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~-ti~skkyG~~~~~Fth-----~~~~~i~sStk~ 78 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK-TINSKKYGVDLACFTH-----HSNTVIHSSTKE 78 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee-EeecccccccEEEEec-----CCceEEEccCCC
Confidence 3445555667889999999999999999999999999999998876 4555666677788866 4456666666
Q ss_pred CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeee
Q 012799 219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRT 297 (456)
Q Consensus 219 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 297 (456)
|.+|+..++.+.+.++.+.+|...|..++.+|-+ .+++++.|++|++||++..++...+.....+ ..++.|.
T Consensus 79 d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~----- 151 (311)
T KOG1446|consen 79 DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPE----- 151 (311)
T ss_pred CCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCC-----
Confidence 8899999999999999999999999999999977 9999999999999999988777666544443 3567776
Q ss_pred ccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCC-CCCccccc---cccccEeEEEECCCCC
Q 012799 298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS-KQPKTRMT---GHQQLVNHVYFSPDGQ 373 (456)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~---~~~~~v~~~~~sp~~~ 373 (456)
|-.+|++.....|++||++.- +.+...+. +.....+.+.|||||+
T Consensus 152 -------------------------------GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK 200 (311)
T KOG1446|consen 152 -------------------------------GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK 200 (311)
T ss_pred -------------------------------CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC
Confidence 445888888889999998865 33333332 3456789999999999
Q ss_pred EEEEEECCCcEEEEeCCCCeEEEEEecccccE---EEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCC
Q 012799 374 WVASASFDKSIKLWNGTTGKFVAVFRGHVGPV---YQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD 450 (456)
Q Consensus 374 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~D 450 (456)
+|+.++..+.+++.|.-+|..+..+.++...- .+. +|+||++++++|+.|
T Consensus 201 ~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a---------------------------~ftPds~Fvl~gs~d 253 (311)
T KOG1446|consen 201 SILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSA---------------------------TFTPDSKFVLSGSDD 253 (311)
T ss_pred EEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeE---------------------------EECCCCcEEEEecCC
Confidence 99999999999999999999999988776533 222 789999999999999
Q ss_pred CceEEC
Q 012799 451 STLKVT 456 (456)
Q Consensus 451 g~v~iW 456 (456)
|+|.+|
T Consensus 254 g~i~vw 259 (311)
T KOG1446|consen 254 GTIHVW 259 (311)
T ss_pred CcEEEE
Confidence 999999
No 89
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.7e-29 Score=202.42 Aligned_cols=258 Identities=21% Similarity=0.343 Sum_probs=209.3
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCC--EEEEEeCCCeEEEEe
Q 012799 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK--HLVSGSKAGELQCWD 178 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~vwd 178 (456)
...+..|.++|++++.+ +.++|+|+.|-+|+|||+.+...+..+-.|.+.|+++.|.++-. .|++|+.||.|.+|+
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 44667899999999995 89999999999999999999999999999999999999998664 899999999999999
Q ss_pred CCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE
Q 012799 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG 257 (456)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~ 257 (456)
......+. .+.+|.+.|+.++.+| .++..++.+.|+.++.||+-+++.-..++- ...-+.+.|+|.| +++.+
T Consensus 114 ~~~W~~~~-slK~H~~~Vt~lsiHP-----S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 114 VGSWELLK-SLKAHKGQVTDLSIHP-----SGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVS 186 (362)
T ss_pred cCCeEEee-eecccccccceeEecC-----CCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEE
Confidence 98886655 7899999999999999 889999999999999999988776554432 2233449999999 77777
Q ss_pred eCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC
Q 012799 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (456)
Q Consensus 258 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (456)
..+ .|-+|.+.+......+... ..+.++.|. ++..+++|.+
T Consensus 187 ~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-------------------------------------~~~~L~vG~d 227 (362)
T KOG0294|consen 187 GRN-KIDIYQLDNASVFREIENP-KRILCATFL-------------------------------------DGSELLVGGD 227 (362)
T ss_pred ecc-EEEEEecccHhHhhhhhcc-ccceeeeec-------------------------------------CCceEEEecC
Confidence 765 4889998887666555433 334444433 2566999999
Q ss_pred CCcEEEEecCCCCCCccccccccccEeEEEE--CCCCCEEEEEECCCcEEEEeCCCC-----eEEEEEecccccEEEE
Q 012799 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF--SPDGQWVASASFDKSIKLWNGTTG-----KFVAVFRGHVGPVYQI 408 (456)
Q Consensus 338 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~i 408 (456)
|+.|.+||... ..+...+.+|...|.++.+ .|++.+|++++.||.|++||+... +++..+.. ...++|+
T Consensus 228 ~~~i~~~D~ds-~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl 303 (362)
T KOG0294|consen 228 NEWISLKDTDS-DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCL 303 (362)
T ss_pred CceEEEeccCC-CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCcccee
Confidence 99999999554 6677788999999999984 567889999999999999998865 45555543 3455555
No 90
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=5.7e-30 Score=217.14 Aligned_cols=247 Identities=23% Similarity=0.437 Sum_probs=208.9
Q ss_pred cCCcccEEEEEECCCC-CeEEEEECCCcEEEEeCCCC----------cceeEEecCCCCEEEEEEcCC-CCEEEEEeCCC
Q 012799 105 AGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQ----------TPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAG 172 (456)
Q Consensus 105 ~~h~~~V~~~~~s~~~-~~l~~~~~d~~v~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg 172 (456)
--|.+.|+.+.+-|+. ..+|+++..+.|.|||..+. .+-.++.+|.+.-+.++|++. .-.|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 4599999999999965 56777888999999998653 223478899998899999984 45899999999
Q ss_pred eEEEEeCCCCCC------ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC--CCeEEEEecCcCccEE
Q 012799 173 ELQCWDPQTGKP------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS--LRKCVICLSGHTLAVT 244 (456)
Q Consensus 173 ~i~vwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~ 244 (456)
.|++||+..... ....+.+|...|..++|++. ....|++++.|+.+.|||++ +.++.....+|.++|.
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~----h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn 276 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPL----HEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN 276 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhcccc----chhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee
Confidence 999999986543 22357889999999999996 45689999999999999999 5666777789999999
Q ss_pred EEEeCCCC--eEEEEeCCCcEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhh
Q 012799 245 CVKWGGDG--VIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321 (456)
Q Consensus 245 ~~~~~~~~--~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (456)
|++|+|-+ .|++|+.|++|.+||+|+. +++.++.+|...|..+.|+|..
T Consensus 277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~---------------------------- 328 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN---------------------------- 328 (422)
T ss_pred EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCC----------------------------
Confidence 99999966 8999999999999999974 5788899999999999999984
Q ss_pred hhccCCCCCEEEEEeCCCcEEEEecCCCCC-------------CccccccccccEeEEEECCCCCE-EEEEECCCcEEEE
Q 012799 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-------------PKTRMTGHQQLVNHVYFSPDGQW-VASASFDKSIKLW 387 (456)
Q Consensus 322 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------------~~~~~~~~~~~v~~~~~sp~~~~-l~s~~~dg~i~iw 387 (456)
...|++++.|+.+.+||+..-.. ++....||...|..+.|+|+..+ |++.+.|+.+.||
T Consensus 329 -------etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW 401 (422)
T KOG0264|consen 329 -------ETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIW 401 (422)
T ss_pred -------CceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEe
Confidence 45699999999999999865432 23455789999999999998776 8889999999999
Q ss_pred eCC
Q 012799 388 NGT 390 (456)
Q Consensus 388 d~~ 390 (456)
...
T Consensus 402 ~~s 404 (422)
T KOG0264|consen 402 QMA 404 (422)
T ss_pred ecc
Confidence 975
No 91
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=7.3e-29 Score=201.00 Aligned_cols=284 Identities=24% Similarity=0.336 Sum_probs=211.0
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce--eE--EecCCCCEEEEEEcCCCCEEEEE-eCCCeEE
Q 012799 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM--FK--CTGHKNWVLCIAWSADGKHLVSG-SKAGELQ 175 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~--~~--~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~ 175 (456)
...|+||.+.|++++|+.||+.||+++.|++|++|+++..... +. ..-.-+..+.+.|.||-+-++.. -...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 5679999999999999999999999999999999998763211 00 11122357889999997765554 4456799
Q ss_pred EEeCCCCCC---cc--------ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEE
Q 012799 176 CWDPQTGKP---SG--------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT 244 (456)
Q Consensus 176 vwd~~~~~~---~~--------~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 244 (456)
+|.+...+. .. .+...|.-.+..+-.-. ++.++++++.|..|.+|+++ |+.+..+......-.
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-----~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~ 232 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-----NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNY 232 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecC-----CceEEEEecCCCcEEEEecC-Cceeeeecccccccc
Confidence 997753321 11 01223444444443333 77899999999999999998 888888877777778
Q ss_pred EEEeCCCC-eEEEEeCCCcEEEEECCC---C-----eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHH
Q 012799 245 CVKWGGDG-VIYTGSQDCTIKVWETTQ---G-----KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK 315 (456)
Q Consensus 245 ~~~~~~~~-~l~~~~~dg~i~iwd~~~---~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (456)
..+.+|+| .+++++.--.|++|..-- | ..+..+.+|...|..++|+++
T Consensus 233 ~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~----------------------- 289 (420)
T KOG2096|consen 233 DAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS----------------------- 289 (420)
T ss_pred ceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC-----------------------
Confidence 88999999 777777888899998632 2 235577899999999999998
Q ss_pred HHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCC----CCCcc------ccccccccEeEEEECCCCCEEEEEECCCcEE
Q 012799 316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS----KQPKT------RMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385 (456)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~------~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~ 385 (456)
..++++.+.||++++||..-. +.+.. .+....+....+.++|+|+.||.+. ...++
T Consensus 290 -------------S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~ 355 (420)
T KOG2096|consen 290 -------------STRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLK 355 (420)
T ss_pred -------------cceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceE
Confidence 667999999999999996432 11111 1111223344899999999888764 55799
Q ss_pred EEeCCCCeEEEEEe-cccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799 386 LWNGTTGKFVAVFR-GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 386 iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i 455 (456)
+|..++|+....++ .|...|.++ +|+++|++++|+|+ ..+++
T Consensus 356 ~~~se~g~~~~~~e~~h~~~Is~i---------------------------s~~~~g~~~atcGd-r~vrv 398 (420)
T KOG2096|consen 356 VFASEDGKDYPELEDIHSTTISSI---------------------------SYSSDGKYIATCGD-RYVRV 398 (420)
T ss_pred EEEcccCccchhHHHhhcCceeeE---------------------------EecCCCcEEeeecc-eeeee
Confidence 99999988776665 688899999 99999999999984 44443
No 92
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=2.6e-29 Score=211.60 Aligned_cols=256 Identities=23% Similarity=0.354 Sum_probs=222.1
Q ss_pred EEeecccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCC
Q 012799 93 RIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG 172 (456)
Q Consensus 93 ~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 172 (456)
.-.+.++...+|+||...|+.+.|+|+...+++++.|..|+||.............|..+|+.+..+|.|.||++++.||
T Consensus 246 ~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~ 325 (506)
T KOG0289|consen 246 FDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDG 325 (506)
T ss_pred EecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCc
Confidence 34567788899999999999999999999999999999999999988888888889999999999999999999999999
Q ss_pred eEEEEeCCCCCCcccccc-CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCC
Q 012799 173 ELQCWDPQTGKPSGNPLS-GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD 251 (456)
Q Consensus 173 ~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 251 (456)
+..+.|++++........ ...-.+++.+|+| ||..|.+|..||.+++||+.++..+..|.+|.++|..++|+.+
T Consensus 326 ~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-----DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsEN 400 (506)
T KOG0289|consen 326 TWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-----DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSEN 400 (506)
T ss_pred eEEEEEccCCcEEEEEeeccccceeEEeeEcC-----CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccC
Confidence 999999999987643222 1234589999999 9999999999999999999999999999999999999999999
Q ss_pred C-eEEEEeCCCcEEEEECCCCeEEEEeecC-CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCC
Q 012799 252 G-VIYTGSQDCTIKVWETTQGKLIRELKGH-GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (456)
Q Consensus 252 ~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (456)
| ++++++.|+.|++||+|..+..+++... ...+.++.|.+. +
T Consensus 401 GY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~S------------------------------------G 444 (506)
T KOG0289|consen 401 GYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQS------------------------------------G 444 (506)
T ss_pred ceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCC------------------------------------C
Confidence 9 9999999999999999998888877643 336888888887 6
Q ss_pred CEEEEEeCCCcEEEEecCC-CCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeC
Q 012799 330 ERLVSGSDDFTMFLWEPAV-SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389 (456)
Q Consensus 330 ~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~ 389 (456)
.+++.++.|=.|++++-.+ .......+..|.+..+++.|..+.+++++++.|..++++.+
T Consensus 445 t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 445 TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred CeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 6799998887888877332 22344556678888999999999999999999999888764
No 93
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=5e-29 Score=197.07 Aligned_cols=234 Identities=19% Similarity=0.284 Sum_probs=207.4
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEE
Q 012799 145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224 (456)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i 224 (456)
.+++|+.+++.+.++.+|.+|++++.|.+..+|-..+|+.+. .+.+|.+.|+++.... +.+++++|+.|.++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG-ty~GHtGavW~~Did~-----~s~~liTGSAD~t~kL 78 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG-TYDGHTGAVWCCDIDW-----DSKHLITGSADQTAKL 78 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee-eecCCCceEEEEEecC-----CcceeeeccccceeEE
Confidence 467899999999999999999999999999999998898887 7899999999999877 7799999999999999
Q ss_pred EECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCC------CcEEEEECC-------CCeEEEEeecCCcceEEEEecC
Q 012799 225 WDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQD------CTIKVWETT-------QGKLIRELKGHGHWVNSLALST 291 (456)
Q Consensus 225 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d------g~i~iwd~~-------~~~~~~~~~~~~~~i~~~~~~~ 291 (456)
||+++|+++..++ ...+|..+.|+.+|.++..+.| +.|.++|++ ..++...+..+.+.++...|.|
T Consensus 79 WDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~ 157 (327)
T KOG0643|consen 79 WDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP 157 (327)
T ss_pred EEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc
Confidence 9999999999886 5788999999999944444433 579999998 4456777777888888888888
Q ss_pred cceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCC
Q 012799 292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD 371 (456)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~ 371 (456)
- +++|++|.+||.|.+||++++...+.....|...|+.++++||
T Consensus 158 l------------------------------------~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d 201 (327)
T KOG0643|consen 158 L------------------------------------GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRD 201 (327)
T ss_pred c------------------------------------CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCC
Confidence 6 6779999999999999999988888888889999999999999
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC
Q 012799 372 GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449 (456)
Q Consensus 372 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~ 449 (456)
..++++++.|.+.++||..+.+.+.++. -..||++. +++|....++.||.
T Consensus 202 ~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~a---------------------------aisP~~d~VilgGG 251 (327)
T KOG0643|consen 202 RTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTA---------------------------AISPLLDHVILGGG 251 (327)
T ss_pred cceEEecccCccceeeeccceeeEEEee-ecccccce---------------------------ecccccceEEecCC
Confidence 9999999999999999999999999887 46788888 88998887777764
No 94
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.3e-30 Score=198.62 Aligned_cols=252 Identities=25% Similarity=0.441 Sum_probs=209.1
Q ss_pred ccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCC---cceeEEecCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEe
Q 012799 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ---TPMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCWD 178 (456)
Q Consensus 104 l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd 178 (456)
-.+|.+.|..+...--|+.|||++.|++|+|+..++. +.+.++.+|.++|..++|.. .|.+||+++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 3579999999999999999999999999999998765 45788999999999999985 799999999999999999
Q ss_pred CCCCCCcc-ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC---eEEEEecCcCccEEEEEeCCC---
Q 012799 179 PQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR---KCVICLSGHTLAVTCVKWGGD--- 251 (456)
Q Consensus 179 ~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~--- 251 (456)
-++++-.. .....|...|++++|.|.. .|-.|++++.||.|.+.+.+.. ........|.-.|++++|.|.
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~waphe---ygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHE---YGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccc---cceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 88875322 2356789999999999965 6679999999999999998754 223345679999999999875
Q ss_pred C------------eEEEEeCCCcEEEEECCCCe--EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHH
Q 012799 252 G------------VIYTGSQDCTIKVWETTQGK--LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA 317 (456)
Q Consensus 252 ~------------~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (456)
| +|++|+.|..|+||+..+++ .-+.+.+|.+.|+.++|.|...+
T Consensus 164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl---------------------- 221 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL---------------------- 221 (299)
T ss_pred ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC----------------------
Confidence 1 49999999999999998763 33458899999999999998432
Q ss_pred HhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC--ccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799 318 LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP--KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (456)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 390 (456)
...+++++++||++.||..+....+ ...+......+..+.||+.|+.|+.++.|+.|.+|.-.
T Consensus 222 ----------~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 222 ----------PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ----------CceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 3456999999999999986643322 22334456789999999999999999999999999744
No 95
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=2.1e-29 Score=213.76 Aligned_cols=244 Identities=23% Similarity=0.375 Sum_probs=206.6
Q ss_pred ecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCCcc---------ccccCcccceEEEEecccccCCCCCEEEEE
Q 012799 147 TGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKPSG---------NPLSGHKKWITGISWEPVHLNAPCRRFVSA 216 (456)
Q Consensus 147 ~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 216 (456)
..|.+.|+.+..-|+ ...+++.+..+.|.|||..+-.... ..+.+|.+.-++++|++. ....++++
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~----~~g~Lls~ 196 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQ----QEGTLLSG 196 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccc----cceeEeec
Confidence 359999999999995 4567777888999999986533211 157789988889999985 44589999
Q ss_pred eCCCcEEEEECCCCe-------EEEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECC--CCeEEEEeecCCcceE
Q 012799 217 SKDGDARIWDVSLRK-------CVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETT--QGKLIRELKGHGHWVN 285 (456)
Q Consensus 217 ~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~ 285 (456)
+.|+.|.+||+.... +...+.+|...|..++|++-. .|.+++.|+.+.|||+| +.++.....+|...+.
T Consensus 197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn 276 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN 276 (422)
T ss_pred cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee
Confidence 999999999996432 355678999999999999865 89999999999999999 5667777888999999
Q ss_pred EEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeE
Q 012799 286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365 (456)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 365 (456)
+++|+|-. +..|++|+.|++|.+||+|+-..+...+.+|...|.+
T Consensus 277 ~~~fnp~~-----------------------------------~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~ 321 (422)
T KOG0264|consen 277 CVAFNPFN-----------------------------------EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQ 321 (422)
T ss_pred EEEeCCCC-----------------------------------CceEEeccCCCcEEEeechhcccCceeccCCCcceEE
Confidence 99999973 5569999999999999999999999999999999999
Q ss_pred EEECCC-CCEEEEEECCCcEEEEeCCC--------------CeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccc
Q 012799 366 VYFSPD-GQWVASASFDKSIKLWNGTT--------------GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSC 430 (456)
Q Consensus 366 ~~~sp~-~~~l~s~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~ 430 (456)
+.|||+ ...||+++.|+.+.+||+.. .+++....||...|..+
T Consensus 322 V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~Df---------------------- 379 (422)
T KOG0264|consen 322 VEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDF---------------------- 379 (422)
T ss_pred EEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccc----------------------
Confidence 999995 56799999999999999864 13457778999999888
Q ss_pred cccceeEecCCC-eEEEeeCCCceEEC
Q 012799 431 CMSLYSWSADSR-LLLSGSKDSTLKVT 456 (456)
Q Consensus 431 ~~~~~~~s~dg~-~l~s~s~Dg~v~iW 456 (456)
.|+|+.. .++|+++|+.+.||
T Consensus 380 -----sWnp~ePW~I~SvaeDN~LqIW 401 (422)
T KOG0264|consen 380 -----SWNPNEPWTIASVAEDNILQIW 401 (422)
T ss_pred -----cCCCCCCeEEEEecCCceEEEe
Confidence 9999886 56788999999999
No 96
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.1e-29 Score=219.40 Aligned_cols=288 Identities=23% Similarity=0.377 Sum_probs=235.8
Q ss_pred ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCC--EEEEEeCCCeEE
Q 012799 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK--HLVSGSKAGELQ 175 (456)
Q Consensus 98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~ 175 (456)
..|...++||++.|.+|...|.|.+||+|+.||+|+||.+.++.++.++. ..+.|.|++|+|.+. .||++ ....+.
T Consensus 390 t~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA-~~~~~~ 467 (733)
T KOG0650|consen 390 TRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA-VGECVL 467 (733)
T ss_pred ceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEE-ecCceE
Confidence 34667789999999999999999999999999999999999999999887 566899999999654 34433 333344
Q ss_pred EEeCCCCC---------------------------------Cc---cccccCcccceEEEEecccccCCCCCEEEEEeCC
Q 012799 176 CWDPQTGK---------------------------------PS---GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD 219 (456)
Q Consensus 176 vwd~~~~~---------------------------------~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d 219 (456)
|-+..-|. .. ......|...|..+.|+. .|.+|++...+
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-----kGDYlatV~~~ 542 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-----KGDYLATVMPD 542 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-----CCceEEEeccC
Confidence 44432221 00 012335778889999998 99999987654
Q ss_pred ---CcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCccee
Q 012799 220 ---GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL 295 (456)
Q Consensus 220 ---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 295 (456)
..|.|.++...+...-+....+.|.++.|+|.. .|++++. ..|++||+..+..++.+......|.+++++|.
T Consensus 543 ~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~--- 618 (733)
T KOG0650|consen 543 SGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPN--- 618 (733)
T ss_pred CCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCC---
Confidence 478999998777666676678889999999988 7776665 67999999998888888878888999999997
Q ss_pred eeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEE
Q 012799 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV 375 (456)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 375 (456)
|+.|+.|+.|+.+..||+.....+.+.+..|...+++++|++.-.++
T Consensus 619 ---------------------------------GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLf 665 (733)
T KOG0650|consen 619 ---------------------------------GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLF 665 (733)
T ss_pred ---------------------------------CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccccee
Confidence 66799999999999999999999999999999999999999999999
Q ss_pred EEEECCCcEEEEeCC------CC---eEEEEEeccccc----EEEEEeeeeeeecCCCCceeeecccccccceeEecCCC
Q 012799 376 ASASFDKSIKLWNGT------TG---KFVAVFRGHVGP----VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442 (456)
Q Consensus 376 ~s~~~dg~i~iwd~~------~~---~~~~~~~~~~~~----v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 442 (456)
++|+.||++.|+.-. .. -++..+++|... |.+. .|+|...
T Consensus 666 as~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~---------------------------~wHP~qp 718 (733)
T KOG0650|consen 666 ASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDT---------------------------IWHPRQP 718 (733)
T ss_pred eeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEee---------------------------cccCCCc
Confidence 999999999999532 11 235677788765 6666 8999999
Q ss_pred eEEEeeCCCceEEC
Q 012799 443 LLLSGSKDSTLKVT 456 (456)
Q Consensus 443 ~l~s~s~Dg~v~iW 456 (456)
+|+++|.||+|++|
T Consensus 719 WLfsAGAd~tirlf 732 (733)
T KOG0650|consen 719 WLFSAGADGTIRLF 732 (733)
T ss_pred eEEecCCCceEEee
Confidence 99999999999998
No 97
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.7e-30 Score=225.59 Aligned_cols=261 Identities=22% Similarity=0.373 Sum_probs=215.8
Q ss_pred CCcccEE---EEEEC-CCCCeEEEEECCCcEEEEeCCCCc------ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 012799 106 GHTEAVL---SVAFS-PDGRQLASGSGDTTVRLWDLNTQT------PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ 175 (456)
Q Consensus 106 ~h~~~V~---~~~~s-~~~~~l~~~~~d~~v~vwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 175 (456)
.|...|. .+..+ |++++|++||.||.|++|++.... ...+++.|.+.|..++...+++.|++++.|-+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 3445555 45554 366789999999999999986432 2567788999999999999999999999999999
Q ss_pred EEeCCCCC-CccccccCcccceEEEEe-cccccCCCCCEEEEEeCCCcEEEEECCCCeE--E--------EEec-CcCcc
Q 012799 176 CWDPQTGK-PSGNPLSGHKKWITGISW-EPVHLNAPCRRFVSASKDGDARIWDVSLRKC--V--------ICLS-GHTLA 242 (456)
Q Consensus 176 vwd~~~~~-~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~--------~~~~-~~~~~ 242 (456)
+|+...+. .....+..|...|.++++ -+ +...+|+||.|+.|.+||++++.. + ..+. ++...
T Consensus 99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak-----~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s 173 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAK-----NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDS 173 (735)
T ss_pred EeecccCcchhHhhhhcccchheeeeeccc-----CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccc
Confidence 99998774 223467889999999998 44 678999999999999999997722 2 2222 78889
Q ss_pred EEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhh
Q 012799 243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321 (456)
Q Consensus 243 v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (456)
|.+++.++.| .+++|+..+.+++||.++++.+..+++|...|..+..+++
T Consensus 174 iYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dD----------------------------- 224 (735)
T KOG0308|consen 174 IYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDD----------------------------- 224 (735)
T ss_pred eeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCC-----------------------------
Confidence 9999999999 8899999999999999999999999999999999999988
Q ss_pred hhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecc
Q 012799 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH 401 (456)
Q Consensus 322 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 401 (456)
+..+++++.||+|++||+... ..+..+..|...|+++..+|+-.++++|+.||.|..=|+++......+-..
T Consensus 225 -------Gt~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~ 296 (735)
T KOG0308|consen 225 -------GTRLLSASSDGTIRLWDLGQQ-RCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE 296 (735)
T ss_pred -------CCeEeecCCCceEEeeecccc-ceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC
Confidence 777999999999999997654 456668899999999999999999999999999999999985433333333
Q ss_pred cccEEEE
Q 012799 402 VGPVYQI 408 (456)
Q Consensus 402 ~~~v~~i 408 (456)
..+|..+
T Consensus 297 daPv~~l 303 (735)
T KOG0308|consen 297 DAPVLKL 303 (735)
T ss_pred CCchhhh
Confidence 4444444
No 98
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=4.9e-29 Score=222.48 Aligned_cols=289 Identities=24% Similarity=0.304 Sum_probs=230.5
Q ss_pred ccccCCcccEEEEEECCC-----------CCeEEEEECCCcEEEEeCCCCcceeE-------------------------
Q 012799 102 ATIAGHTEAVLSVAFSPD-----------GRQLASGSGDTTVRLWDLNTQTPMFK------------------------- 145 (456)
Q Consensus 102 ~~l~~h~~~V~~~~~s~~-----------~~~l~~~~~d~~v~vwd~~~~~~~~~------------------------- 145 (456)
..+.-|...|+.+.--|- ..-+.|++.|++|++|++..+..-..
T Consensus 363 ~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d 442 (1080)
T KOG1408|consen 363 SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHD 442 (1080)
T ss_pred eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhh
Confidence 345568888888876651 12488999999999999875211000
Q ss_pred ------------EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEE
Q 012799 146 ------------CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213 (456)
Q Consensus 146 ------------~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l 213 (456)
.-+....+.+++.+|+|++||+|..-|+++||++.+-+... ....|..+|.++.|+.... ..++|
T Consensus 443 ~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~-~~eAHesEilcLeyS~p~~--~~kLL 519 (1080)
T KOG1408|consen 443 ASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTC-FMEAHESEILCLEYSFPVL--TNKLL 519 (1080)
T ss_pred ccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhh-heecccceeEEEeecCchh--hhHhh
Confidence 00234569999999999999999999999999999877665 6789999999999986333 34789
Q ss_pred EEEeCCCcEEEEECCC-CeEEEEecCcCccEEEEEeCCCC---eEEEEeCCCcEEEEECCCCeEEEEeec-----CCcce
Q 012799 214 VSASKDGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDG---VIYTGSQDCTIKVWETTQGKLIRELKG-----HGHWV 284 (456)
Q Consensus 214 ~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~i 284 (456)
++++.|..|++||+.. -.++.++.+|...|+++.|-..| .+++++.|..|.+=-.+.......+.. ....+
T Consensus 520 ASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTl 599 (1080)
T KOG1408|consen 520 ASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTL 599 (1080)
T ss_pred hhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceE
Confidence 9999999999999864 45677889999999999998876 889999998775432221111122211 23457
Q ss_pred EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccc--ccccccc
Q 012799 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR--MTGHQQL 362 (456)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~ 362 (456)
..+++.|. ..++++++.|..|+|||+..++..... -.+|++.
T Consensus 600 YDm~Vdp~------------------------------------~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~ 643 (1080)
T KOG1408|consen 600 YDMAVDPT------------------------------------SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGD 643 (1080)
T ss_pred EEeeeCCC------------------------------------cceEEEEecccceEEEeccccceeeeecccccCCCc
Confidence 77888877 556999999999999998877643322 2456778
Q ss_pred EeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCC
Q 012799 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442 (456)
Q Consensus 363 v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 442 (456)
.-.+...|.|.|||+.+.|.++.++|..+|+++....||...|+.+ .|.+|.+
T Consensus 644 lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~---------------------------kF~nDCk 696 (1080)
T KOG1408|consen 644 LIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGV---------------------------KFLNDCK 696 (1080)
T ss_pred eEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeee---------------------------eecccch
Confidence 8889999999999999999999999999999999999999999999 8899999
Q ss_pred eEEEeeCCCceEEC
Q 012799 443 LLLSGSKDSTLKVT 456 (456)
Q Consensus 443 ~l~s~s~Dg~v~iW 456 (456)
.|++.+.||.|.||
T Consensus 697 HlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 697 HLISVSGDGCIFVW 710 (1080)
T ss_pred hheeecCCceEEEE
Confidence 99999999999999
No 99
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=4.7e-29 Score=233.18 Aligned_cols=270 Identities=26% Similarity=0.358 Sum_probs=216.6
Q ss_pred ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC------------------CcceeEEecCCCCEEEEEEc
Q 012799 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT------------------QTPMFKCTGHKNWVLCIAWS 159 (456)
Q Consensus 98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~------------------~~~~~~~~~~~~~v~~~~~~ 159 (456)
.+...+...|.+.|+|+.|+|||++||+|+.|+.|.||.... -+....+.+|...|..++|+
T Consensus 59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence 445566788999999999999999999999999999999772 12456778999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCc
Q 012799 160 ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH 239 (456)
Q Consensus 160 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 239 (456)
|++.+|++++.|++|.+||..+.+.. +.+.+|...|..+.|.| -|++|++-+.|++|++|++.+....+.+.++
T Consensus 139 p~~~~lvS~s~DnsViiwn~~tF~~~-~vl~~H~s~VKGvs~DP-----~Gky~ASqsdDrtikvwrt~dw~i~k~It~p 212 (942)
T KOG0973|consen 139 PDDSLLVSVSLDNSVIIWNAKTFELL-KVLRGHQSLVKGVSWDP-----IGKYFASQSDDRTLKVWRTSDWGIEKSITKP 212 (942)
T ss_pred CCccEEEEecccceEEEEccccceee-eeeecccccccceEECC-----ccCeeeeecCCceEEEEEcccceeeEeeccc
Confidence 99999999999999999999999554 48999999999999999 8999999999999999998887777777554
Q ss_pred C------ccEEEEEeCCCC-eEEEEeC----CCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccC
Q 012799 240 T------LAVTCVKWGGDG-VIYTGSQ----DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS 308 (456)
Q Consensus 240 ~------~~v~~~~~~~~~-~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 308 (456)
. ..+..+.|+||| +|++... -.++.|.+..+.+.-..+-+|..++.++.|+|...-.- ..++......
T Consensus 213 f~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~-~~ng~~~~~~ 291 (942)
T KOG0973|consen 213 FEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERN-NKNGTSTQPN 291 (942)
T ss_pred hhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccc-cccCCccCCC
Confidence 2 457899999999 6665432 24688999888888889999999999999998621000 0000000000
Q ss_pred ChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEe
Q 012799 309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388 (456)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd 388 (456)
..-..+++|+.|++|.||.....++......-....|.+++|+|||..|+++|.||+|.+..
T Consensus 292 ------------------~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 292 ------------------CYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIH 353 (942)
T ss_pred ------------------cceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEE
Confidence 00125889999999999997555544444444456799999999999999999999999999
Q ss_pred CCCC
Q 012799 389 GTTG 392 (456)
Q Consensus 389 ~~~~ 392 (456)
.+..
T Consensus 354 Fee~ 357 (942)
T KOG0973|consen 354 FEEK 357 (942)
T ss_pred cchH
Confidence 8763
No 100
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.3e-29 Score=223.76 Aligned_cols=314 Identities=21% Similarity=0.279 Sum_probs=243.9
Q ss_pred ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCC--cceeEEecCCCCEEEEEE-cCCCCEEEEEeCCCeE
Q 012799 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ--TPMFKCTGHKNWVLCIAW-SADGKHLVSGSKAGEL 174 (456)
Q Consensus 98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~s~~~dg~i 174 (456)
.+++..++.|.++|+.++...+++.|+++|.|-+|++|+...+ -++.++..|.+.|.|+++ .++...+|+||.|+.|
T Consensus 63 ~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~I 142 (735)
T KOG0308|consen 63 TPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKI 142 (735)
T ss_pred cchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccE
Confidence 3467889999999999999999999999999999999999877 567788899999999999 7788899999999999
Q ss_pred EEEeCCCCCC----------ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEE
Q 012799 175 QCWDPQTGKP----------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT 244 (456)
Q Consensus 175 ~vwd~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 244 (456)
.+||++++.. ......++...|++++..+ .|..+++|+..+.+++||.++.+.+..+.+|...|.
T Consensus 143 flWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-----t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr 217 (735)
T KOG0308|consen 143 FLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-----TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVR 217 (735)
T ss_pred EEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-----cceEEEecCcccceEEeccccccceeeeeccccceE
Confidence 9999997732 1112237888999999888 788999999999999999999999999999999999
Q ss_pred EEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhh
Q 012799 245 CVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK 323 (456)
Q Consensus 245 ~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (456)
++..+++| .+++++.||+|++||+...+++.++..|...+.++..+|..
T Consensus 218 ~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf------------------------------ 267 (735)
T KOG0308|consen 218 VLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSF------------------------------ 267 (735)
T ss_pred EEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCc------------------------------
Confidence 99999999 99999999999999999999999999999999999998873
Q ss_pred ccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccc
Q 012799 324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403 (456)
Q Consensus 324 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 403 (456)
..+++|+.||.|+.=|+++..... .+...+.+|..+..+.+.+-+-+++.|+.|+-|..+-.-.+.....-..
T Consensus 268 ------~~vYsG~rd~~i~~Tdl~n~~~~t-lick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~ 340 (735)
T KOG0308|consen 268 ------THVYSGGRDGNIYRTDLRNPAKST-LICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDF 340 (735)
T ss_pred ------ceEEecCCCCcEEecccCCchhhe-EeecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCc
Confidence 459999999999999988764332 2334456677777775555557778899999997653222111110000
Q ss_pred cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 404 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
..++..- ..+.....-..+..+..++..-+.-.|.++++|-...|.+.+|
T Consensus 341 ~~T~~~~---~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lw 390 (735)
T KOG0308|consen 341 FSTDSNN---HSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALW 390 (735)
T ss_pred ccccCCC---ccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEE
Confidence 0011000 0000000111123333334334556788999999999999998
No 101
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=2.3e-28 Score=217.44 Aligned_cols=325 Identities=24% Similarity=0.413 Sum_probs=239.0
Q ss_pred cccccccCCcccEEEEEECCCCC---eEEEEECCCcEEEEeCCCCc---------------------ce----------e
Q 012799 99 RCSATIAGHTEAVLSVAFSPDGR---QLASGSGDTTVRLWDLNTQT---------------------PM----------F 144 (456)
Q Consensus 99 ~~~~~l~~h~~~V~~~~~s~~~~---~l~~~~~d~~v~vwd~~~~~---------------------~~----------~ 144 (456)
+....|.||.+.|.+++|...+. +||++|.|..||||.+.-+. .. .
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea 261 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA 261 (764)
T ss_pred eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence 45678999999999999997554 89999999999999864221 01 1
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc------cccCcccceEEEEecccccCCCCCEEEEEeC
Q 012799 145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN------PLSGHKKWITGISWEPVHLNAPCRRFVSASK 218 (456)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~ 218 (456)
.+.||.+.|+++.|+|.+..|++++.|.++.+|...+..-+.. ...+......+.-|+| +++.+++-+.
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-----n~~~ii~~g~ 336 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-----NSNVIIAHGR 336 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC-----CCCEEEEecc
Confidence 1238999999999999999999999999999998876532110 1223344567888888 8899999999
Q ss_pred CCcEEEEECCC---CeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCe----EEEEeecCCcceEEEEec
Q 012799 219 DGDARIWDVSL---RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK----LIRELKGHGHWVNSLALS 290 (456)
Q Consensus 219 dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~~ 290 (456)
.|..++|.... ......+.+|...|++++|+|.| +|++.+.|.+-|+|-.-..+ .+..-+.|+..++++++-
T Consensus 337 ~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v 416 (764)
T KOG1063|consen 337 TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV 416 (764)
T ss_pred cCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehc
Confidence 99999998322 23445568999999999999999 99999999999998654111 122224577788888877
Q ss_pred C-cceeeeccccCCCCccCChHHHHHHHH---------------------------------------------------
Q 012799 291 T-EYALRTGAFDHTGKQYSSPEEMKKAAL--------------------------------------------------- 318 (456)
Q Consensus 291 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------- 318 (456)
+ +..+.++......+.+..+........
T Consensus 417 n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~ 496 (764)
T KOG1063|consen 417 NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA 496 (764)
T ss_pred cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence 7 555555444333333332221111000
Q ss_pred ----------------hh--------------hhhccCCCCCEEEEEeCCC-----cEEEEecCCCCCCccccccccccE
Q 012799 319 ----------------ER--------------YNKIKGNAPERLVSGSDDF-----TMFLWEPAVSKQPKTRMTGHQQLV 363 (456)
Q Consensus 319 ----------------~~--------------~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~v 363 (456)
.. +.....+.++.+++++... .|++|+..+ ......+.+|.-.|
T Consensus 497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~-W~~~~~L~~HsLTV 575 (764)
T KOG1063|consen 497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN-WLQVQELEGHSLTV 575 (764)
T ss_pred chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc-hhhhheecccceEE
Confidence 00 0011345677777777644 589999543 44455789999999
Q ss_pred eEEEECCCCCEEEEEECCCcEEEEeCCCCeE----EEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEec
Q 012799 364 NHVYFSPDGQWVASASFDKSIKLWNGTTGKF----VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA 439 (456)
Q Consensus 364 ~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 439 (456)
+.++|||||++|++.+.|.++.+|....... ....+.|+.-|++. .|+|
T Consensus 576 T~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdc---------------------------sW~p 628 (764)
T KOG1063|consen 576 TRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDC---------------------------SWSP 628 (764)
T ss_pred EEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEc---------------------------ccCc
Confidence 9999999999999999999999998754322 33467899999999 9999
Q ss_pred CCCeEEEeeCCCceEEC
Q 012799 440 DSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 440 dg~~l~s~s~Dg~v~iW 456 (456)
++.+++|+|.|.+|+||
T Consensus 629 de~~FaTaSRDK~VkVW 645 (764)
T KOG1063|consen 629 DEKYFATASRDKKVKVW 645 (764)
T ss_pred ccceeEEecCCceEEEE
Confidence 99999999999999999
No 102
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=5.5e-29 Score=213.48 Aligned_cols=277 Identities=22% Similarity=0.429 Sum_probs=231.8
Q ss_pred cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCC---cceeEEe--cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ---TPMFKCT--GHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (456)
Q Consensus 105 ~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~---~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 179 (456)
..|.+-|.++.+|...+++.||+ .|.|+|||+... .++..+. .....|.++...|||+.|++|+.-.++.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 46999999999999999999996 567999999643 2333332 35678999999999999999999999999999
Q ss_pred CCCCCcc-ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE
Q 012799 180 QTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG 257 (456)
Q Consensus 180 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~ 257 (456)
....... ..+.......++++.+| |.+..+++..||.|.|||+.+...++.+++|...+.||.++++| .|.+|
T Consensus 495 AapTprikaeltssapaCyALa~sp-----DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTG 569 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISP-----DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTG 569 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCC-----ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecC
Confidence 8665422 12233334456777777 88999999999999999999999999999999999999999999 99999
Q ss_pred eCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC
Q 012799 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (456)
Q Consensus 258 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (456)
+-|++|+.||+++++.+.... ..+.|.++..+|. +++++.|-.
T Consensus 570 GlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~------------------------------------~dWlavGMe 612 (705)
T KOG0639|consen 570 GLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPT------------------------------------GDWLAVGME 612 (705)
T ss_pred CCccceeehhhhhhhhhhhhh-hhhhheecccCCC------------------------------------ccceeeecc
Confidence 999999999999988766554 4567888888887 667999999
Q ss_pred CCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeec
Q 012799 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR 417 (456)
Q Consensus 338 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 417 (456)
++.+.+.... +.....+.-|++.|.++.|.+.|+++++.+.|+.+..|...-|..+...+ ...+|.++
T Consensus 613 ns~vevlh~s--kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsC--------- 680 (705)
T KOG0639|consen 613 NSNVEVLHTS--KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSC--------- 680 (705)
T ss_pred cCcEEEEecC--CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceee---------
Confidence 9999887743 34455677899999999999999999999999999999999998887766 46678888
Q ss_pred CCCCceeeecccccccceeEecCCCeEEEeeCCCceE
Q 012799 418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLK 454 (456)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~ 454 (456)
..|.|.++++|||.|..-.
T Consensus 681 ------------------DIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 681 ------------------DISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred ------------------eeccCceEEEecCCCcceE
Confidence 7899999999999986543
No 103
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=4.4e-28 Score=194.46 Aligned_cols=299 Identities=23% Similarity=0.336 Sum_probs=228.6
Q ss_pred ccEEEEEEeccceEEEeecccccccccCCcccEEEEEECC-CCCeEEEEECCCcEEEEeCCCCcc----------ee---
Q 012799 79 EKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTP----------MF--- 144 (456)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~~~~----------~~--- 144 (456)
..++.++..++.-+. ..|.+.|+++...+ .|+++++|+.||.|.+||+++... +.
T Consensus 25 rRil~L~Ln~d~d~~-----------r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~ 93 (397)
T KOG4283|consen 25 RRILSLQLNNDKDFV-----------RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVA 93 (397)
T ss_pred hhhheeeccCCccee-----------ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeecc
Confidence 345555555554332 46999999999998 589999999999999999976430 00
Q ss_pred --EEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCc
Q 012799 145 --KCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221 (456)
Q Consensus 145 --~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~ 221 (456)
.-.+|.-.|..+.|-| |...+.+++.|.++++||.++-+... .....+.|++-+++|... .-.++++|..|-.
T Consensus 94 ~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~--~F~me~~VYshamSp~a~--sHcLiA~gtr~~~ 169 (397)
T KOG4283|consen 94 KQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAV--DFKMEGKVYSHAMSPMAM--SHCLIAAGTRDVQ 169 (397)
T ss_pred ccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeE--EeecCceeehhhcChhhh--cceEEEEecCCCc
Confidence 1136888999999999 66688899999999999999877653 344567888889988653 2357788888899
Q ss_pred EEEEECCCCeEEEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCC-eEEEEee--------------cCCcce
Q 012799 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQG-KLIRELK--------------GHGHWV 284 (456)
Q Consensus 222 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~-~~~~~~~--------------~~~~~i 284 (456)
|++-|+.+|.+...+.+|.+.|.++.|+|.. .|++|+.||.|++||++.. .+...+. .|.+.+
T Consensus 170 VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkv 249 (397)
T KOG4283|consen 170 VRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKV 249 (397)
T ss_pred EEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccccee
Confidence 9999999999999999999999999999987 8899999999999999864 3333333 344556
Q ss_pred EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccc--cccc-
Q 012799 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT--GHQQ- 361 (456)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~- 361 (456)
+.++|..+ +.++++.+.|..+++|+...+......+. .|..
T Consensus 250 ngla~tSd------------------------------------~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~ 293 (397)
T KOG4283|consen 250 NGLAWTSD------------------------------------ARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQT 293 (397)
T ss_pred eeeeeccc------------------------------------chhhhhccCccceEEeecccCccccccccccccccc
Confidence 66666655 67799999999999999877654332221 1111
Q ss_pred --cEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEec
Q 012799 362 --LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA 439 (456)
Q Consensus 362 --~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 439 (456)
.-..+. +.+...++---.++.+.++.+-+|..+..+..|-..+.+. ++-|
T Consensus 294 ~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~---------------------------~~~~ 345 (397)
T KOG4283|consen 294 TSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCA---------------------------AYRP 345 (397)
T ss_pred ccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEE---------------------------eecC
Confidence 111122 3344455555567899999999999999999998888888 7788
Q ss_pred CCCeEEEeeCCCceEEC
Q 012799 440 DSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 440 dg~~l~s~s~Dg~v~iW 456 (456)
+=+...+|+.|+.+..|
T Consensus 346 ~fq~~~tg~~d~ni~~w 362 (397)
T KOG4283|consen 346 DFEQCFTGDMNGNIYMW 362 (397)
T ss_pred chhhhhccccCCccccc
Confidence 88889999999999887
No 104
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=6.6e-28 Score=223.20 Aligned_cols=230 Identities=18% Similarity=0.261 Sum_probs=176.7
Q ss_pred ccccccCCcccEEEEEECCC-CCeEEEEECCCcEEEEeCCCCc--------ceeEEecCCCCEEEEEEcCCCCE-EEEEe
Q 012799 100 CSATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQT--------PMFKCTGHKNWVLCIAWSADGKH-LVSGS 169 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~-~~~l~~~~~d~~v~vwd~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~-l~s~~ 169 (456)
....+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++. ++..+.+|...|.+++|+|++.. |++++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 45678999999999999997 7899999999999999997542 34467889999999999998875 57899
Q ss_pred CCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEE---
Q 012799 170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCV--- 246 (456)
Q Consensus 170 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~--- 246 (456)
.|++|++||+++++.... + .|...|.+++|+| +|.+|++++.|+.|++||+++++.+..+.+|.+.+.+.
T Consensus 146 ~DgtIrIWDl~tg~~~~~-i-~~~~~V~Slswsp-----dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~ 218 (568)
T PTZ00420 146 FDSFVNIWDIENEKRAFQ-I-NMPKKLSSLKWNI-----KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIW 218 (568)
T ss_pred CCCeEEEEECCCCcEEEE-E-ecCCcEEEEEECC-----CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEE
Confidence 999999999998876542 2 3567899999999 99999999999999999999999999999998765432
Q ss_pred --EeCCCC-eEEEEeCCC----cEEEEECCC-CeEEEEeecCC--cceEEEEecCcceeeeccccCCCCccCChHHHHHH
Q 012799 247 --KWGGDG-VIYTGSQDC----TIKVWETTQ-GKLIRELKGHG--HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316 (456)
Q Consensus 247 --~~~~~~-~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (456)
.|++++ ++++++.|+ .|++||++. ++++..+..+. ..+.. .+.++
T Consensus 219 ~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p-~~D~~------------------------ 273 (568)
T PTZ00420 219 IDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIP-HYDES------------------------ 273 (568)
T ss_pred eeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEE-eeeCC------------------------
Confidence 344666 888877764 799999995 55555543222 11111 12222
Q ss_pred HHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCC
Q 012799 317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG 372 (456)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~ 372 (456)
.+.++++|+.|+.|++|++..+.........+..+..+++|.|..
T Consensus 274 -----------tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 274 -----------TGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred -----------CCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence 256789999999999999865532211222356778899999964
No 105
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.2e-29 Score=206.04 Aligned_cols=242 Identities=22% Similarity=0.364 Sum_probs=215.3
Q ss_pred cccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 012799 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (456)
Q Consensus 103 ~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 181 (456)
.|.-|.++|.|+.|+.|..+||+|+.||.|++|.+.+|.++..+. .|...|+|+.|+.|+..+++++.|.++++.-+++
T Consensus 258 ~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS 337 (508)
T KOG0275|consen 258 NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS 337 (508)
T ss_pred ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc
Confidence 455689999999999999999999999999999999999999987 8999999999999999999999999999999999
Q ss_pred CCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC--cCccEEEEEeCCCC--eEEEE
Q 012799 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG--HTLAVTCVKWGGDG--VIYTG 257 (456)
Q Consensus 182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~--~l~~~ 257 (456)
|+.+. .+.+|...|+...|.+ +|.++++++.||+|++|+..+.+|+.+++. ...+|..+...|.+ .++++
T Consensus 338 GK~LK-EfrGHsSyvn~a~ft~-----dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC 411 (508)
T KOG0275|consen 338 GKCLK-EFRGHSSYVNEATFTD-----DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVC 411 (508)
T ss_pred chhHH-HhcCccccccceEEcC-----CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEE
Confidence 99886 6899999999999999 999999999999999999999999988864 45678888888876 89999
Q ss_pred eCCCcEEEEECCCCeEEEEeec---CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799 258 SQDCTIKVWETTQGKLIRELKG---HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (456)
Q Consensus 258 ~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (456)
...+++.+.++. |+.++++.. .++...+..++|. ++++++
T Consensus 412 Nrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpk------------------------------------GewiYc 454 (508)
T KOG0275|consen 412 NRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPK------------------------------------GEWIYC 454 (508)
T ss_pred cCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCC------------------------------------CcEEEE
Confidence 999999999975 677777743 3455666677776 677999
Q ss_pred EeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEe
Q 012799 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388 (456)
Q Consensus 335 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd 388 (456)
.++|+.++.|....++ ....+.-|+..+..++-+|..++||+-+.||.+++|.
T Consensus 455 igED~vlYCF~~~sG~-LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 455 IGEDGVLYCFSVLSGK-LERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EccCcEEEEEEeecCc-eeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999976554 5556778899999999999999999999999999995
No 106
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.3e-28 Score=210.53 Aligned_cols=246 Identities=26% Similarity=0.370 Sum_probs=204.9
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeC
Q 012799 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDP 179 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~ 179 (456)
.+++.-..+.|.++.|-.||++||+|...|.|+|||+.+...+..+.+|..+|..+.|+|+ +..+++|+.|+.+++||+
T Consensus 61 ~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~ 140 (487)
T KOG0310|consen 61 RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL 140 (487)
T ss_pred hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEc
Confidence 4456667889999999999999999999999999998776678889999999999999994 567778888999999999
Q ss_pred CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC-eEEEEecCcCccEEEEEeCCCCeEEEEe
Q 012799 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDGVIYTGS 258 (456)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 258 (456)
.+... ...+.+|...|.+.+|+|. ++..+++||.||.|++||++.. ..+..+ .|..+|..+.+-|.|.+++..
T Consensus 141 s~a~v-~~~l~~htDYVR~g~~~~~----~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasA 214 (487)
T KOG0310|consen 141 STAYV-QAELSGHTDYVRCGDISPA----NDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASA 214 (487)
T ss_pred CCcEE-EEEecCCcceeEeeccccC----CCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEc
Confidence 98875 4478999999999999994 4568999999999999999987 555555 489999999999998444444
Q ss_pred CCCcEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC
Q 012799 259 QDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (456)
Q Consensus 259 ~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (456)
....+++||+.+| +.+..+..|...|+|+.+..+ +..|++|+-
T Consensus 215 gGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~------------------------------------~~rLlS~sL 258 (487)
T KOG0310|consen 215 GGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASD------------------------------------STRLLSGSL 258 (487)
T ss_pred CCCeEEEEEecCCceehhhhhcccceEEEEEeecC------------------------------------CceEeeccc
Confidence 5568999999965 455555559999999999876 567999999
Q ss_pred CCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (456)
Q Consensus 338 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 390 (456)
|+.+++||+.+ -+.+..+ .-.++|.+++.+|+++.++.|..||.+.+-+..
T Consensus 259 D~~VKVfd~t~-~Kvv~s~-~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 259 DRHVKVFDTTN-YKVVHSW-KYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred ccceEEEEccc-eEEEEee-ecccceeeEEecCCCceEEEecccceeeeehhh
Confidence 99999999433 3333333 346789999999999999999999988877543
No 107
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=5.9e-29 Score=208.19 Aligned_cols=242 Identities=22% Similarity=0.366 Sum_probs=206.4
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 179 (456)
...+|.|-.++|+++.|.++++++++++.|+.+++|+++..+...++.+|.+.|+++.|......+++|+.|.+|++||+
T Consensus 211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl 290 (459)
T KOG0288|consen 211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL 290 (459)
T ss_pred hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhh
Confidence 56788999999999999999999999999999999999999999999999999999999987777999999999999999
Q ss_pred CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe
Q 012799 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS 258 (456)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~ 258 (456)
....+....+.+. .+.++... ...+++|-.|++|++||+++..+......+. .|+++..++++ .+++++
T Consensus 291 ~k~~C~kt~l~~S--~cnDI~~~-------~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsss 360 (459)
T KOG0288|consen 291 QKAYCSKTVLPGS--QCNDIVCS-------ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSS 360 (459)
T ss_pred hhhheeccccccc--cccceEec-------ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeec
Confidence 9987766544432 34444433 3578899999999999999999999887665 99999999999 889999
Q ss_pred CCCcEEEEECCCCeEEEEeecC----CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799 259 QDCTIKVWETTQGKLIRELKGH----GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (456)
Q Consensus 259 ~dg~i~iwd~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (456)
.|.++.+.|+++.+....+... ....+.+.|+|+ +.|+++
T Consensus 361 RDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd------------------------------------~~YvaA 404 (459)
T KOG0288|consen 361 RDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD------------------------------------GSYVAA 404 (459)
T ss_pred CCCceeeeecccccEEEEeeccccccccccceeEECCC------------------------------------Cceeee
Confidence 9999999999998888777542 334777888887 778999
Q ss_pred EeCCCcEEEEecCCCCCCccccccccc-cEeEEEECCCCCEEEEEECCCcEEEE
Q 012799 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQ-LVNHVYFSPDGQWVASASFDKSIKLW 387 (456)
Q Consensus 335 ~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~s~~~dg~i~iw 387 (456)
|+.||.|+||++.+++.....-..+.. .|++++|+|.|..|++++.++.+.+|
T Consensus 405 GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 405 GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 999999999997776544333333333 69999999999999999999999999
No 108
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=9.8e-28 Score=203.75 Aligned_cols=281 Identities=17% Similarity=0.245 Sum_probs=227.2
Q ss_pred CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCC--cceeEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCC
Q 012799 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ--TPMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDPQTGK 183 (456)
Q Consensus 107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~ 183 (456)
-.+.|+++.|+|...+|++++.||+++||.++.. ..+..+.-...+|.+..|.|+|. .+++++....+..||+.+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 3578999999999999999999999999988643 45566666788999999999999 89999999999999999887
Q ss_pred Cccc-cccCcc-cceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCC
Q 012799 184 PSGN-PLSGHK-KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD 260 (456)
Q Consensus 184 ~~~~-~~~~~~-~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d 260 (456)
.... ...++. ..+.....++ ++++++..|..|.|.+....+++.+..++ -.+.|..++|+.++ .|++++.+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVSh-----d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~ 365 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSH-----DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGT 365 (514)
T ss_pred cccccCCCCcccchhheeEecC-----CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCC
Confidence 5431 222333 3455556666 88999999999999999999999888876 56789999999999 88889999
Q ss_pred CcEEEEECCCCeEEEEeecCCc-ceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC
Q 012799 261 CTIKVWETTQGKLIRELKGHGH-WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339 (456)
Q Consensus 261 g~i~iwd~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 339 (456)
|.|.+||++...++..+...++ .-++++.+++ +.++++|+..|
T Consensus 366 GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~n------------------------------------g~ylA~GS~~G 409 (514)
T KOG2055|consen 366 GEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLN------------------------------------GSYLATGSDSG 409 (514)
T ss_pred ceEEEEecCCcceEEEEeecCccceeeeeecCC------------------------------------CceEEeccCcc
Confidence 9999999999999888874332 2345666665 66799999999
Q ss_pred cEEEEecCC-----CCCCccccccccccEeEEEECCCCCEEEEEE--CCCcEEEEeCCCCeEEEEEeccc---ccEEEEE
Q 012799 340 TMFLWEPAV-----SKQPKTRMTGHQQLVNHVYFSPDGQWVASAS--FDKSIKLWNGTTGKFVAVFRGHV---GPVYQIR 409 (456)
Q Consensus 340 ~i~iwd~~~-----~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~---~~v~~i~ 409 (456)
.|.|||... ...++..+..-...|++++|+||+++||.+| .+..+++-.+.+......+.... +.|+++
T Consensus 410 iVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~- 488 (514)
T KOG2055|consen 410 IVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCM- 488 (514)
T ss_pred eEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEE-
Confidence 999999543 2345555556667899999999999988776 45789999988877666555443 345666
Q ss_pred eeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+|||.|.+||.|.++|.|.+|
T Consensus 489 --------------------------aFSP~sG~lAvGNe~grv~l~ 509 (514)
T KOG2055|consen 489 --------------------------AFSPNSGYLAVGNEAGRVHLF 509 (514)
T ss_pred --------------------------EecCCCceEEeecCCCceeeE
Confidence 999999999999999999998
No 109
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.6e-28 Score=207.59 Aligned_cols=247 Identities=23% Similarity=0.376 Sum_probs=211.9
Q ss_pred CeEEEEE-CCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEE
Q 012799 121 RQLASGS-GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI 199 (456)
Q Consensus 121 ~~l~~~~-~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 199 (456)
.+++++. ....+.+|.+..........--.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+++
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~-v~~aHYQ~ITcL 129 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN-VLSAHYQSITCL 129 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHH-HHHhhccceeEE
Confidence 5666664 44589999998766555444467889999999999999999999999999999999887 569999999999
Q ss_pred EecccccCCCCCEEEEEeCCCcEEEEECC---------CCeEEEEecCcCccEEEEEeCCCC---eEEEEeCCCcEEEEE
Q 012799 200 SWEPVHLNAPCRRFVSASKDGDARIWDVS---------LRKCVICLSGHTLAVTCVKWGGDG---VIYTGSQDCTIKVWE 267 (456)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---------~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~i~iwd 267 (456)
.|+- ||.+|++||.||.|.+|++. +-+++..+..|.-+|+++...+.| ++++++.|.++++||
T Consensus 130 ~fs~-----dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wd 204 (476)
T KOG0646|consen 130 KFSD-----DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWD 204 (476)
T ss_pred EEeC-----CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEE
Confidence 9998 99999999999999999863 456788899999999999998765 999999999999999
Q ss_pred CCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecC
Q 012799 268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA 347 (456)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 347 (456)
+..+..+.++. ....+.+++++|. ...++.|+.+|.|.+.++.
T Consensus 205 lS~g~LLlti~-fp~si~av~lDpa------------------------------------e~~~yiGt~~G~I~~~~~~ 247 (476)
T KOG0646|consen 205 LSLGVLLLTIT-FPSSIKAVALDPA------------------------------------ERVVYIGTEEGKIFQNLLF 247 (476)
T ss_pred eccceeeEEEe-cCCcceeEEEccc------------------------------------ccEEEecCCcceEEeeehh
Confidence 99999988887 5677999999987 4569999999999988764
Q ss_pred CCC---------------CCccccccccc--cEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799 348 VSK---------------QPKTRMTGHQQ--LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410 (456)
Q Consensus 348 ~~~---------------~~~~~~~~~~~--~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 410 (456)
... .....+.+|.+ .|+|++++-||.+|++|+.||.|+|||+.+.++++++....++|+.+.+
T Consensus 248 ~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 248 KLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred cCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEe
Confidence 332 12344568888 9999999999999999999999999999999999888767788888855
No 110
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.8e-28 Score=208.19 Aligned_cols=255 Identities=25% Similarity=0.327 Sum_probs=210.0
Q ss_pred eeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc----c------------cc-cCcccceEEEEecccc
Q 012799 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG----N------------PL-SGHKKWITGISWEPVH 205 (456)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~----~------------~~-~~~~~~v~~~~~~~~~ 205 (456)
...+..|..++.+++++|++++.++++.+|+|.-|++.+++... . .. ..|...+.+++.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~-- 212 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS-- 212 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC--
Confidence 44556799999999999999999999999999999998877331 0 11 27888899999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcce
Q 012799 206 LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWV 284 (456)
Q Consensus 206 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i 284 (456)
++++|++|+.|..|.||+.++.+.+..+++|.+.|.+++|-... .+++++.|+.+++|++.....+.++.+|.+.|
T Consensus 213 ---Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v 289 (479)
T KOG0299|consen 213 ---DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGV 289 (479)
T ss_pred ---CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccce
Confidence 99999999999999999999999999999999999999998755 99999999999999999999999999999999
Q ss_pred EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEe
Q 012799 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN 364 (456)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 364 (456)
..+..... ...+-+|+.|+++++|++... ....+.+|.+.+-
T Consensus 290 ~~IdaL~r------------------------------------eR~vtVGgrDrT~rlwKi~ee--sqlifrg~~~sid 331 (479)
T KOG0299|consen 290 LGIDALSR------------------------------------ERCVTVGGRDRTVRLWKIPEE--SQLIFRGGEGSID 331 (479)
T ss_pred eeechhcc------------------------------------cceEEeccccceeEEEecccc--ceeeeeCCCCCee
Confidence 99887654 333666679999999998443 3445678888999
Q ss_pred EEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeE
Q 012799 365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL 444 (456)
Q Consensus 365 ~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 444 (456)
|++|-.+ ..+++|+.+|.|.+|++...+++.+.+.-.+-+..+ .....+..++.++..|...++
T Consensus 332 cv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~---------------~~~~~~~Witsla~i~~sdL~ 395 (479)
T KOG0299|consen 332 CVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPEL---------------DPVNGNFWITSLAVIPGSDLL 395 (479)
T ss_pred eEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCc---------------cccccccceeeeEecccCceE
Confidence 9999754 578999999999999999999888765211111100 011122455666889999999
Q ss_pred EEeeCCCceEEC
Q 012799 445 LSGSKDSTLKVT 456 (456)
Q Consensus 445 ~s~s~Dg~v~iW 456 (456)
++|+.+|.||+|
T Consensus 396 asGS~~G~vrLW 407 (479)
T KOG0299|consen 396 ASGSWSGCVRLW 407 (479)
T ss_pred EecCCCCceEEE
Confidence 999999999999
No 111
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.4e-28 Score=198.06 Aligned_cols=254 Identities=28% Similarity=0.478 Sum_probs=215.8
Q ss_pred ecccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeC------CC------------------------------
Q 012799 96 PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL------NT------------------------------ 139 (456)
Q Consensus 96 ~~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~------~~------------------------------ 139 (456)
..++|..++.||.+.|+++.|++.+.++++++.|++-.||.. ..
T Consensus 178 Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD 257 (481)
T KOG0300|consen 178 ESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSD 257 (481)
T ss_pred ccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccC
Confidence 457899999999999999999999999999999999999972 11
Q ss_pred ----CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEE
Q 012799 140 ----QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215 (456)
Q Consensus 140 ----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~ 215 (456)
..++..+.+|...|.+..|-..|+.+++++.|.+..+||++++..+. .+.+|....+.++-+| ..+++++
T Consensus 258 ~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~-~LtGHd~ELtHcstHp-----tQrLVvT 331 (481)
T KOG0300|consen 258 GHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVN-ILTGHDSELTHCSTHP-----TQRLVVT 331 (481)
T ss_pred CceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceec-cccCcchhccccccCC-----cceEEEE
Confidence 01455677999999999999999999999999999999999999876 8999999999999999 7789999
Q ss_pred EeCCCcEEEEECCCC-eEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCe-EEEEeecCCcceEEEEecCcc
Q 012799 216 ASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGK-LIRELKGHGHWVNSLALSTEY 293 (456)
Q Consensus 216 ~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~ 293 (456)
.+.|.+.++||++.. ..+..|.+|...|+++.|.-+..+++|+.|.+|++||+++.+ ++.++. ..++++.++++...
T Consensus 332 sSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~ 410 (481)
T KOG0300|consen 332 SSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGH 410 (481)
T ss_pred eccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCC
Confidence 999999999999853 446778999999999999998899999999999999998754 566665 56678888887653
Q ss_pred eeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC---CCccccccccccEeEEEECC
Q 012799 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK---QPKTRMTGHQQLVNHVYFSP 370 (456)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~sp 370 (456)
..++.-.++..|++||+.... .+...-.+|...|+|++|..
T Consensus 411 ------------------------------------~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~e 454 (481)
T KOG0300|consen 411 ------------------------------------PIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLE 454 (481)
T ss_pred ------------------------------------ceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccc
Confidence 347788888999999976543 23345578999999999986
Q ss_pred CCC--EEEEEECCCcEEEEeCCCC
Q 012799 371 DGQ--WVASASFDKSIKLWNGTTG 392 (456)
Q Consensus 371 ~~~--~l~s~~~dg~i~iwd~~~~ 392 (456)
+.. -|++++.|..+.-|.+...
T Consensus 455 ehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 455 EHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCcccccccccccceeeeeEeccc
Confidence 543 3889999999999998754
No 112
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.9e-27 Score=191.48 Aligned_cols=276 Identities=18% Similarity=0.318 Sum_probs=213.9
Q ss_pred EEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccccc
Q 012799 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS 190 (456)
Q Consensus 111 V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 190 (456)
-.|+.|++.|.+||+|+.||.|.|||+.+...-..+.+|..+|++++||++|+.|++++.|..|.+||+..|.+.. ..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~--ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK--RI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee--EE
Confidence 6899999999999999999999999999999888999999999999999999999999999999999999998765 33
Q ss_pred CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcC----ccEEEEEeCCCC-eEEEEeCCCcEEE
Q 012799 191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT----LAVTCVKWGGDG-VIYTGSQDCTIKV 265 (456)
Q Consensus 191 ~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~~~~~-~l~~~~~dg~i~i 265 (456)
....+|+.+.|+|.. .+..++.-.+..-.+.++..++....-.... ....+..|++.| ++++|...|.+.+
T Consensus 104 rf~spv~~~q~hp~k----~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv 179 (405)
T KOG1273|consen 104 RFDSPVWGAQWHPRK----RNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLV 179 (405)
T ss_pred EccCccceeeecccc----CCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEE
Confidence 457889999999953 3344444444445555555432211111111 122334577888 9999999999999
Q ss_pred EECCCCeEEEEeecCC-cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEE
Q 012799 266 WETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW 344 (456)
Q Consensus 266 wd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 344 (456)
+|..+-+++..++... ..|..+.++.. +++++.-+.|+.|+.|
T Consensus 180 ~~a~t~e~vas~rits~~~IK~I~~s~~------------------------------------g~~liiNtsDRvIR~y 223 (405)
T KOG1273|consen 180 YDAETLECVASFRITSVQAIKQIIVSRK------------------------------------GRFLIINTSDRVIRTY 223 (405)
T ss_pred EecchheeeeeeeechheeeeEEEEecc------------------------------------CcEEEEecCCceEEEE
Confidence 9999999988887655 67778888776 6679999999999999
Q ss_pred ecCCCC------C--Cccccc--cccccEeEEEECCCCCEEEEEEC-CCcEEEEeCCCCeEEEEEeccc-ccEEEEEeee
Q 012799 345 EPAVSK------Q--PKTRMT--GHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGTTGKFVAVFRGHV-GPVYQIRFEL 412 (456)
Q Consensus 345 d~~~~~------~--~~~~~~--~~~~~v~~~~~sp~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~ 412 (456)
++..-. . +..++. -....-.+++||.+|.|++.|+. -..++||....|.+++.+.|.. ....++
T Consensus 224 e~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV---- 299 (405)
T KOG1273|consen 224 EISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDV---- 299 (405)
T ss_pred ehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeec----
Confidence 965211 1 111111 12234567899999999888764 3579999999999999999887 466677
Q ss_pred eeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.|+|-...+++- ..|.|+||
T Consensus 300 -----------------------~whp~rp~i~si-~sg~v~iw 319 (405)
T KOG1273|consen 300 -----------------------NWHPVRPIIASI-ASGVVYIW 319 (405)
T ss_pred -----------------------ccccceeeeeec-cCCceEEE
Confidence 889988778777 78999998
No 113
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.4e-28 Score=192.14 Aligned_cols=255 Identities=21% Similarity=0.310 Sum_probs=201.8
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC--ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEE
Q 012799 147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP--SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224 (456)
Q Consensus 147 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i 224 (456)
..|++.|..+...--|++|||++.|++|+|+..+++.. ....+.+|.++|..++|.... -|..|++++.||.|.|
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk---~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPK---FGTILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccc---cCcEeeEeecCceEEE
Confidence 46888888888888899999999999999999987663 334689999999999997533 6789999999999999
Q ss_pred EECCCCe--EEEEecCcCccEEEEEeCCCC---eEEEEeCCCcEEEEECCCC---eEEEEeecCCcceEEEEecCcce--
Q 012799 225 WDVSLRK--CVICLSGHTLAVTCVKWGGDG---VIYTGSQDCTIKVWETTQG---KLIRELKGHGHWVNSLALSTEYA-- 294 (456)
Q Consensus 225 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~-- 294 (456)
|.-..++ .......|...|++++|-|.+ .|++++.||.|.+.+.+.. ...+....|.-.+++++|.|...
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 9988774 234456799999999999976 8899999999999988764 22344567888999999998621
Q ss_pred -eeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC-CccccccccccEeEEEECCCC
Q 012799 295 -LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-PKTRMTGHQQLVNHVYFSPDG 372 (456)
Q Consensus 295 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~sp~~ 372 (456)
+.... .......|++|+.|..|+||+.....- ....+.+|.+.|+.++|.|.-
T Consensus 165 ~~~~~~-------------------------~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~ 219 (299)
T KOG1332|consen 165 SLVDQG-------------------------PAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSV 219 (299)
T ss_pred cccccC-------------------------cccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhcccc
Confidence 10000 001135699999999999999776542 233488999999999999953
Q ss_pred ----CEEEEEECCCcEEEEeCCCC-e--EEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEE
Q 012799 373 ----QWVASASFDKSIKLWNGTTG-K--FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL 445 (456)
Q Consensus 373 ----~~l~s~~~dg~i~iwd~~~~-~--~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 445 (456)
.+||+++.||++.||..... + ....++.....++.+ .||+.|+.|+
T Consensus 220 gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~v---------------------------SWS~sGn~La 272 (299)
T KOG1332|consen 220 GLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRV---------------------------SWSLSGNILA 272 (299)
T ss_pred CCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEE---------------------------EEeccccEEE
Confidence 46999999999999976531 1 122334456788888 9999999999
Q ss_pred EeeCCCceEEC
Q 012799 446 SGSKDSTLKVT 456 (456)
Q Consensus 446 s~s~Dg~v~iW 456 (456)
.++.|+.|.+|
T Consensus 273 Vs~GdNkvtlw 283 (299)
T KOG1332|consen 273 VSGGDNKVTLW 283 (299)
T ss_pred EecCCcEEEEE
Confidence 99999999998
No 114
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=2.4e-28 Score=197.32 Aligned_cols=256 Identities=23% Similarity=0.389 Sum_probs=205.6
Q ss_pred cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeE--EecCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 012799 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK--CTGHKNWVLCIAWSADGKHLVSGSKAGELQC 176 (456)
Q Consensus 99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v 176 (456)
..+++|..|.+.|+++.|+|....|++|+.|++|++||+..-...+. ......+|.++.|+|.|.+|+.|....++++
T Consensus 163 PvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rl 242 (430)
T KOG0640|consen 163 PVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRL 242 (430)
T ss_pred ceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeE
Confidence 46789999999999999999999999999999999999975432221 2235678999999999999999999999999
Q ss_pred EeCCCCCCcc--ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CcC-ccEEEEEeCCCC
Q 012799 177 WDPQTGKPSG--NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHT-LAVTCVKWGGDG 252 (456)
Q Consensus 177 wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~-~~v~~~~~~~~~ 252 (456)
||+++-++.. ....+|.+.|+++.+++ .+++.++|+.||.|++||--+++|+.++. .|. ..|.+..|..++
T Consensus 243 Ydv~T~QcfvsanPd~qht~ai~~V~Ys~-----t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ 317 (430)
T KOG0640|consen 243 YDVNTYQCFVSANPDDQHTGAITQVRYSS-----TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNG 317 (430)
T ss_pred EeccceeEeeecCcccccccceeEEEecC-----CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCC
Confidence 9999887532 34567999999999999 89999999999999999999999998884 454 568899999999
Q ss_pred -eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCE
Q 012799 253 -VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331 (456)
Q Consensus 253 -~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (456)
++++.+.|..+++|.+.+++.+..+.+.+..-.. ..+...++....++
T Consensus 318 kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq-------------------------------~~rtqAvFNhtEdy 366 (430)
T KOG0640|consen 318 KYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQ-------------------------------KHRTQAVFNHTEDY 366 (430)
T ss_pred eEEeecCCcceeeeeeecCCceEEEEecCCcccch-------------------------------hhhhhhhhcCccce
Confidence 9999999999999999999999988764221000 00001111112334
Q ss_pred EEEEe-CCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799 332 LVSGS-DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (456)
Q Consensus 332 l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 390 (456)
++.-. ..+.+.-||.++.......-.+|.+.++.+.-||.+.-+++|+.|-.+++|--+
T Consensus 367 Vl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 367 VLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred EEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 44433 356788999888776666667999999999999999999999999999999643
No 115
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=7.9e-27 Score=214.24 Aligned_cols=255 Identities=18% Similarity=0.288 Sum_probs=209.2
Q ss_pred cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCC-cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 012799 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ-TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (456)
Q Consensus 105 ~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 183 (456)
.+|+..-+.++|.|+|++|.+++.||.|++|+.... +...++.-+...|.+++- ++.+|++|+.+++|.+|.+.+++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 479999999999999999999999999999998765 333444337778888876 55699999999999999999887
Q ss_pred CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCc
Q 012799 184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCT 262 (456)
Q Consensus 184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~ 262 (456)
.-. .+....-++..++|+. +|++++.||.|-.|++.+.........+++|.++|.++.++|++ .|++.+.||.
T Consensus 88 ~~~-iL~Rftlp~r~~~v~g-----~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~ 161 (933)
T KOG1274|consen 88 EDT-ILARFTLPIRDLAVSG-----SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK 161 (933)
T ss_pred ccc-eeeeeeccceEEEEec-----CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCce
Confidence 654 5666778899999987 99999999999999999999999999999999999999999999 8999999999
Q ss_pred EEEEECCCCeEEEEeecC--------CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799 263 IKVWETTQGKLIRELKGH--------GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (456)
Q Consensus 263 i~iwd~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (456)
|++||+.++....++.+- ...+..++|+|+ +..++.
T Consensus 162 v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk------------------------------------~g~la~ 205 (933)
T KOG1274|consen 162 VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPK------------------------------------GGTLAV 205 (933)
T ss_pred EEEEEcccchhhhhcccCCccccccccceeeeeeecCC------------------------------------CCeEEe
Confidence 999999998776665431 344567888887 556888
Q ss_pred EeCCCcEEEEecCCCCCCcccc--ccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799 335 GSDDFTMFLWEPAVSKQPKTRM--TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408 (456)
Q Consensus 335 ~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 408 (456)
.+.|+.|.+|+.... .....+ ..+...+.+++|+|+|+|||+++.||.|.|||..+-+. ......|.++
T Consensus 206 ~~~d~~Vkvy~r~~w-e~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~ 276 (933)
T KOG1274|consen 206 PPVDNTVKVYSRKGW-ELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCE 276 (933)
T ss_pred eccCCeEEEEccCCc-eeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEE
Confidence 899999999995443 333333 23344599999999999999999999999999987221 2233467777
No 116
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.7e-26 Score=177.39 Aligned_cols=244 Identities=25% Similarity=0.386 Sum_probs=204.6
Q ss_pred cccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc-----ceeEEecCCCCEEEEEEcCC----CCEEEEEeC-CC
Q 012799 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-----PMFKCTGHKNWVLCIAWSAD----GKHLVSGSK-AG 172 (456)
Q Consensus 103 ~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~----~~~l~s~~~-dg 172 (456)
.-+.|.+.|+|.+|+|+|+++|+|+.|++|++..++... .-..+.-|.+.|..++|-.+ +..|++++. |.
T Consensus 84 r~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc 163 (350)
T KOG0641|consen 84 RNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC 163 (350)
T ss_pred eccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence 346799999999999999999999999999998665432 23456679999999999753 456776553 66
Q ss_pred eEEEEeCCCCCCccccccCcccceEEEE-ecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC--c-----CccEE
Q 012799 173 ELQCWDPQTGKPSGNPLSGHKKWITGIS-WEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG--H-----TLAVT 244 (456)
Q Consensus 173 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~-----~~~v~ 244 (456)
.|.+-|...|+... .+.+|.+.|.++- | ++-+|++|+.|.+|++||++-..++..+.. | ...|.
T Consensus 164 ~iy~tdc~~g~~~~-a~sghtghilalysw-------n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessava 235 (350)
T KOG0641|consen 164 KIYITDCGRGQGFH-ALSGHTGHILALYSW-------NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVA 235 (350)
T ss_pred eEEEeecCCCCcce-eecCCcccEEEEEEe-------cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeE
Confidence 78888888888765 6889999998873 4 567999999999999999999888887632 2 36799
Q ss_pred EEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhh
Q 012799 245 CVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK 323 (456)
Q Consensus 245 ~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (456)
++++.|.| .|++|-.|....+||++.++.++.+..|...|.++.|+|.
T Consensus 236 av~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~------------------------------- 284 (350)
T KOG0641|consen 236 AVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPG------------------------------- 284 (350)
T ss_pred EEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCC-------------------------------
Confidence 99999999 8888999999999999999999999999999999999997
Q ss_pred ccCCCCCEEEEEeCCCcEEEEecCCC---CCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799 324 IKGNAPERLVSGSDDFTMFLWEPAVS---KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (456)
Q Consensus 324 ~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 390 (456)
..++++++.|..|++-|+... +.+......|...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 285 -----a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 285 -----AHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred -----ceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 566999999999999997543 23445566889999999999988889999999999999763
No 117
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.2e-27 Score=188.97 Aligned_cols=246 Identities=17% Similarity=0.295 Sum_probs=192.1
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCc---cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEE
Q 012799 147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS---GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223 (456)
Q Consensus 147 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~ 223 (456)
.+|.+-|.++.|.+.|+.+|+|+.|++++|||.++.... ......|.+.|..+.|.+.. -|+.+++++.|+++.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPE---fGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPE---FGQVVATCSYDRTVS 86 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCcc---ccceEEEEecCCcee
Confidence 368899999999999999999999999999997654322 12467899999999998855 678999999999999
Q ss_pred EEECC---------CCeEEEEecCcCccEEEEEeCCCC---eEEEEeCCCcEEEEECCCCe------EEEEee-------
Q 012799 224 IWDVS---------LRKCVICLSGHTLAVTCVKWGGDG---VIYTGSQDCTIKVWETTQGK------LIRELK------- 278 (456)
Q Consensus 224 iwd~~---------~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~------~~~~~~------- 278 (456)
||.-. ......++......|+++.|.|.. .+++++.||.+|||+..... +..+++
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 99752 122345566678899999999964 89999999999999875432 222222
Q ss_pred cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC-----CcEEEEecCCCC---
Q 012799 279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD-----FTMFLWEPAVSK--- 350 (456)
Q Consensus 279 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~--- 350 (456)
.+..+..|+.|++... ...+|+.|+.+ +.++||......
T Consensus 167 ~~~~~~~CvsWn~sr~---------------------------------~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw 213 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRM---------------------------------HEPLIAVGSDEDAPHLNKVKIYEYNENGRKW 213 (361)
T ss_pred cccCcceEEeeccccc---------------------------------cCceEEEEcccCCccccceEEEEecCCccee
Confidence 2445667777776422 14457777766 478888755443
Q ss_pred CCccccccccccEeEEEECCC----CCEEEEEECCCcEEEEeCCC--------------------CeEEEEEecccccEE
Q 012799 351 QPKTRMTGHQQLVNHVYFSPD----GQWVASASFDKSIKLWNGTT--------------------GKFVAVFRGHVGPVY 406 (456)
Q Consensus 351 ~~~~~~~~~~~~v~~~~~sp~----~~~l~s~~~dg~i~iwd~~~--------------------~~~~~~~~~~~~~v~ 406 (456)
..+..+.+|..+|++++|.|+ -.+||+++.|| |+||.++. -+.+..+..|.+.|+
T Consensus 214 ~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VW 292 (361)
T KOG2445|consen 214 LKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVW 292 (361)
T ss_pred eeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceE
Confidence 234456799999999999995 34699999999 99999873 123556778999999
Q ss_pred EEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 407 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.+ .|+-.|..|++.|.||.||+|
T Consensus 293 rv---------------------------~wNmtGtiLsStGdDG~VRLW 315 (361)
T KOG2445|consen 293 RV---------------------------RWNMTGTILSSTGDDGCVRLW 315 (361)
T ss_pred EE---------------------------EEeeeeeEEeecCCCceeeeh
Confidence 99 889999999999999999999
No 118
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=5.3e-27 Score=188.91 Aligned_cols=240 Identities=18% Similarity=0.260 Sum_probs=193.8
Q ss_pred cCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC-CCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEE
Q 012799 148 GHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQT-GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW 225 (456)
Q Consensus 148 ~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 225 (456)
...+.|.+++||| ...++++++.||+||+|+++. |....+....|.++|.+++|+. +|..+++|+.|+.+++|
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd-----dgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD-----DGSKVFSGGCDKQAKLW 99 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc-----CCceEEeeccCCceEEE
Confidence 4678899999999 566777999999999999987 5666667788999999999999 99999999999999999
Q ss_pred ECCCCeEEEEecCcCccEEEEEeCCCC---eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccC
Q 012799 226 DVSLRKCVICLSGHTLAVTCVKWGGDG---VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302 (456)
Q Consensus 226 d~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 302 (456)
|+.+++ ...+..|.++|.++.|-+.. .|++|+.|.+|+.||.+...++.++.. ...+.++..-
T Consensus 100 DL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~------------ 165 (347)
T KOG0647|consen 100 DLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVL------------ 165 (347)
T ss_pred EccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhcc------------
Confidence 999995 55667899999999998754 789999999999999999988888874 3445554432
Q ss_pred CCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccc-ccccccEeEEEECCCCCEEEEEECC
Q 012799 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDGQWVASASFD 381 (456)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~s~~~d 381 (456)
...++.+..++.|.+|++++........ ....-.++|++..+|....+.|+-+
T Consensus 166 --------------------------~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 166 --------------------------YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE 219 (347)
T ss_pred --------------------------CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence 2348889999999999987655433322 2234468899998888888999999
Q ss_pred CcEEEEeCCCC--eEEEEEecccc------cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCce
Q 012799 382 KSIKLWNGTTG--KFVAVFRGHVG------PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL 453 (456)
Q Consensus 382 g~i~iwd~~~~--~~~~~~~~~~~------~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v 453 (456)
|.+.|..+..+ +.-.+|+.|.. .|+. ++.++|+|.-..|+|+|.||+.
T Consensus 220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa------------------------VNsi~FhP~hgtlvTaGsDGtf 275 (347)
T KOG0647|consen 220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA------------------------VNSIAFHPVHGTLVTAGSDGTF 275 (347)
T ss_pred ceEEEEecCCCCccCceeEEEeccCCCCCCceEE------------------------ecceEeecccceEEEecCCceE
Confidence 99999999887 44556676653 1222 2344999999999999999999
Q ss_pred EEC
Q 012799 454 KVT 456 (456)
Q Consensus 454 ~iW 456 (456)
.+|
T Consensus 276 ~FW 278 (347)
T KOG0647|consen 276 SFW 278 (347)
T ss_pred EEe
Confidence 998
No 119
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=2e-27 Score=211.54 Aligned_cols=240 Identities=30% Similarity=0.465 Sum_probs=209.1
Q ss_pred cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc-ccccCcccceEE-EEecccccCCCCCEEEEEeC
Q 012799 141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG-NPLSGHKKWITG-ISWEPVHLNAPCRRFVSASK 218 (456)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~v~~-~~~~~~~~~~~~~~l~~~~~ 218 (456)
+..+.+.+|...|..+++.+ +..++++++||++++|+-..++... ..+.+|.+.|.. ++|.+ . ++..+++|+.
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e-~---~~~~l~~g~~ 79 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE-S---DKGRLVVGGM 79 (745)
T ss_pred eeEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc-c---cCcceEeecc
Confidence 34567889999999988764 4489999999999999987766554 345667777776 77766 2 5667999999
Q ss_pred CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeec
Q 012799 219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG 298 (456)
Q Consensus 219 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 298 (456)
|+.|.+|...+..++..+++|...|.|++...++.+++|+.|.++++|-. +++...+.+|...|.++..-|+.
T Consensus 80 D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~----- 152 (745)
T KOG0301|consen 80 DTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN----- 152 (745)
T ss_pred cceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-----
Confidence 99999999999999999999999999999888889999999999999965 56777799999999999988762
Q ss_pred cccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEE
Q 012799 299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA 378 (456)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~ 378 (456)
.+++|+.|.+|++|. +......+.+|.+.|+.+++-+++. ++++
T Consensus 153 --------------------------------~~vTgsaDKtIklWk---~~~~l~tf~gHtD~VRgL~vl~~~~-flSc 196 (745)
T KOG0301|consen 153 --------------------------------TYVTGSADKTIKLWK---GGTLLKTFSGHTDCVRGLAVLDDSH-FLSC 196 (745)
T ss_pred --------------------------------cEEeccCcceeeecc---CCchhhhhccchhheeeeEEecCCC-eEee
Confidence 589999999999997 3567778999999999999998754 7899
Q ss_pred ECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 379 SFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 379 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+.||.|++|++ +|+.+..+.+|+.-|+++ +...++..++++|+|++++||
T Consensus 197 sNDg~Ir~w~~-~ge~l~~~~ghtn~vYsi---------------------------s~~~~~~~Ivs~gEDrtlriW 246 (745)
T KOG0301|consen 197 SNDGSIRLWDL-DGEVLLEMHGHTNFVYSI---------------------------SMALSDGLIVSTGEDRTLRIW 246 (745)
T ss_pred cCCceEEEEec-cCceeeeeeccceEEEEE---------------------------EecCCCCeEEEecCCceEEEe
Confidence 99999999998 899999999999999999 667888999999999999999
No 120
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.8e-26 Score=186.35 Aligned_cols=250 Identities=20% Similarity=0.382 Sum_probs=196.3
Q ss_pred cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc----ceeEEecCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEe
Q 012799 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT----PMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCWD 178 (456)
Q Consensus 105 ~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~----~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd 178 (456)
.+|.+-|.++.|.+.|+.+|+|+.|++|+|||.++.. .....+.|.+.|..+.|.+ -|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4799999999999999999999999999999975443 4455678999999999986 589999999999999997
Q ss_pred CCCCCC--------ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe------EEEEec-------
Q 012799 179 PQTGKP--------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK------CVICLS------- 237 (456)
Q Consensus 179 ~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~------- 237 (456)
-..... ....+......|+++.|.|.+ -|-.+++++.||.++||+....- ....+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~h---lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKH---LGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchh---cceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 532111 122455667889999999977 56799999999999999865332 222222
Q ss_pred CcCccEEEEEeCCCC----eEEEEeCC-----CcEEEEECCCC----eEEEEeecCCcceEEEEecCcceeeeccccCCC
Q 012799 238 GHTLAVTCVKWGGDG----VIYTGSQD-----CTIKVWETTQG----KLIRELKGHGHWVNSLALSTEYALRTGAFDHTG 304 (456)
Q Consensus 238 ~~~~~v~~~~~~~~~----~l~~~~~d-----g~i~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 304 (456)
.+..+..|+.|++.. .|++|+.+ +.++||....+ ..+.++.+|..+|+.++|.|+..
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~G---------- 236 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIG---------- 236 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccC----------
Confidence 466778899999854 67777665 47888876543 24556778999999999999731
Q ss_pred CccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC-------------------CCccccccccccEeE
Q 012799 305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-------------------QPKTRMTGHQQLVNH 365 (456)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------------------~~~~~~~~~~~~v~~ 365 (456)
..-..|++++.|| |+||.+.... ..+..+..|.+.|..
T Consensus 237 ----------------------r~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWr 293 (361)
T KOG2445|consen 237 ----------------------RSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWR 293 (361)
T ss_pred ----------------------CceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEE
Confidence 1245699999999 9999976311 122345689999999
Q ss_pred EEECCCCCEEEEEECCCcEEEEeCC
Q 012799 366 VYFSPDGQWVASASFDKSIKLWNGT 390 (456)
Q Consensus 366 ~~~sp~~~~l~s~~~dg~i~iwd~~ 390 (456)
+.|+-.|..|++.|.||.||+|...
T Consensus 294 v~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 294 VRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEEeeeeeEEeecCCCceeeehhhh
Confidence 9999999999999999999999754
No 121
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.2e-26 Score=197.60 Aligned_cols=261 Identities=22% Similarity=0.287 Sum_probs=207.7
Q ss_pred EECC-CcEEEEeCCCCcceeEEecC-CCCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCCCccccccCcccceEEEEec
Q 012799 126 GSGD-TTVRLWDLNTQTPMFKCTGH-KNWVLCIAWSADGKHLVSGSK-AGELQCWDPQTGKPSGNPLSGHKKWITGISWE 202 (456)
Q Consensus 126 ~~~d-~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 202 (456)
++.| .++.+||+.+|....++++. ...-.++..- .+.+++++.. ...+.+|.+....... ...--.+.|.+++-+
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASS 90 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhh-hhcccccceeeeecC
Confidence 3444 45999999999998888765 2222222222 3356666654 4479999987655443 233346778999988
Q ss_pred ccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECC---------CCe
Q 012799 203 PVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT---------QGK 272 (456)
Q Consensus 203 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~---------~~~ 272 (456)
| +|.+++.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+.|| +|++|+.||.|.+|++. +-+
T Consensus 91 n-----~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~ 165 (476)
T KOG0646|consen 91 N-----LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVK 165 (476)
T ss_pred C-----CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcc
Confidence 8 88888888899999999999999999999999999999999999 99999999999999863 346
Q ss_pred EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC
Q 012799 273 LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP 352 (456)
Q Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 352 (456)
++..+..|.-+|+++...+.+ ...++++++.|.++++||+..+...
T Consensus 166 p~~~f~~HtlsITDl~ig~Gg----------------------------------~~~rl~TaS~D~t~k~wdlS~g~LL 211 (476)
T KOG0646|consen 166 PLHIFSDHTLSITDLQIGSGG----------------------------------TNARLYTASEDRTIKLWDLSLGVLL 211 (476)
T ss_pred ceeeeccCcceeEEEEecCCC----------------------------------ccceEEEecCCceEEEEEeccceee
Confidence 788888999999999887653 2456999999999999998877544
Q ss_pred ccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCC----------------CeEEEEEecccc--cEEEEEeeeee
Q 012799 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT----------------GKFVAVFRGHVG--PVYQIRFELIY 414 (456)
Q Consensus 353 ~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~----------------~~~~~~~~~~~~--~v~~i~~~~~~ 414 (456)
.... ....+.+++.+|.++.++.|+.+|.|.+.++.. +..+..+.+|.+ +|+++
T Consensus 212 lti~--fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL------ 283 (476)
T KOG0646|consen 212 LTIT--FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCL------ 283 (476)
T ss_pred EEEe--cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEE------
Confidence 4333 356799999999999999999999999987653 233456667777 77777
Q ss_pred eecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+.+-||..|++|+.||.|+||
T Consensus 284 ---------------------ais~DgtlLlSGd~dg~VcvW 304 (476)
T KOG0646|consen 284 ---------------------AISTDGTLLLSGDEDGKVCVW 304 (476)
T ss_pred ---------------------EEecCccEEEeeCCCCCEEEE
Confidence 889999999999999999999
No 122
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=3.8e-27 Score=202.84 Aligned_cols=241 Identities=23% Similarity=0.341 Sum_probs=186.2
Q ss_pred cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCc----cccccCcccceEEEEecccccCCCCCEEEEE
Q 012799 141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS----GNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216 (456)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 216 (456)
.....+.+|...|.++++.|.|-.|++|+.|..|++||+...... ..+.......|.++.|++ .|..|++.
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-----Tg~~iLvv 232 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-----TGDQILVV 232 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-----CCCeEEEE
Confidence 344567789999999999999999999999999999999755432 223344556799999999 88899999
Q ss_pred eCCCcEEEEECCCCeEEE------------EecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeE-EEEee---
Q 012799 217 SKDGDARIWDVSLRKCVI------------CLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKL-IRELK--- 278 (456)
Q Consensus 217 ~~dg~i~iwd~~~~~~~~------------~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~-~~~~~--- 278 (456)
+.....+++|-...+... ..++|...++|.+|+|.. .+++++.||++++||+...+. .+.+.
T Consensus 233 sg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~ 312 (641)
T KOG0772|consen 233 SGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP 312 (641)
T ss_pred ecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence 998999999965443322 235789999999999977 899999999999999976542 22332
Q ss_pred --cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC--CCcc
Q 012799 279 --GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK--QPKT 354 (456)
Q Consensus 279 --~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~ 354 (456)
+..-++++.+|+++ +..|++|+.||.|.+|+..... ....
T Consensus 313 ~~g~Rv~~tsC~~nrd------------------------------------g~~iAagc~DGSIQ~W~~~~~~v~p~~~ 356 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRD------------------------------------GKLIAAGCLDGSIQIWDKGSRTVRPVMK 356 (641)
T ss_pred CCCcccCceeeecCCC------------------------------------cchhhhcccCCceeeeecCCcccccceE
Confidence 23446788889988 5569999999999999964322 2223
Q ss_pred ccccccc--cEeEEEECCCCCEEEEEECCCcEEEEeCCCC-eEEEEEecccc--cEEEEEeeeeeeecCCCCceeeeccc
Q 012799 355 RMTGHQQ--LVNHVYFSPDGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVG--PVYQIRFELIYCFRYPSNFYCVVDMS 429 (456)
Q Consensus 355 ~~~~~~~--~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~--~v~~i~~~~~~~~~~~~~~~~~~~~~ 429 (456)
.-.+|.. .|+|+.||+||++|++-+.|+++++||++.. +++.+..+-.. +-+.+
T Consensus 357 vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc--------------------- 415 (641)
T KOG0772|consen 357 VKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDC--------------------- 415 (641)
T ss_pred eeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCcc---------------------
Confidence 3456776 8999999999999999999999999999874 44554443222 22333
Q ss_pred ccccceeEecCCCeEEEeeC
Q 012799 430 CCMSLYSWSADSRLLLSGSK 449 (456)
Q Consensus 430 ~~~~~~~~s~dg~~l~s~s~ 449 (456)
+|||+.++|++|..
T Consensus 416 ------~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 416 ------CFSPDDKLILTGTS 429 (641)
T ss_pred ------ccCCCceEEEeccc
Confidence 89999999999864
No 123
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.6e-27 Score=213.40 Aligned_cols=278 Identities=19% Similarity=0.307 Sum_probs=218.3
Q ss_pred ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce----eEEe---cCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Q 012799 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM----FKCT---GHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQ 180 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~----~~~~---~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~ 180 (456)
....+|+.+++-..++.++.. .++||.+...... .... .-...+..+.|+. +.++||+++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 345667778888888887654 6888877543211 1111 1122455678875 67899999999999999998
Q ss_pred C--CCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--eEEE
Q 012799 181 T--GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYT 256 (456)
Q Consensus 181 ~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~ 256 (456)
. .+.....+..|...+.++.|++.+ ..+|++|+.||.|++||++..+...++.+....|+++.|+|.. .|++
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~te----p~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s 194 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTE----PNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFAS 194 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCC----ccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEE
Confidence 7 233333688999999999999864 3589999999999999999999988898888999999999854 9999
Q ss_pred EeCCCcEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEE
Q 012799 257 GSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (456)
Q Consensus 257 ~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (456)
+...|.+++||+|.. ++...+..|.++|.++.|+|+ +.+|++|
T Consensus 195 ~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn------------------------------------r~~lATG 238 (839)
T KOG0269|consen 195 IHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN------------------------------------REWLATG 238 (839)
T ss_pred ecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC------------------------------------Cceeeec
Confidence 999999999999975 456778899999999999998 6679999
Q ss_pred eCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCE-EEEEE--CCCcEEEEeCCCCe-EEEEEecccccEEEEEee
Q 012799 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW-VASAS--FDKSIKLWNGTTGK-FVAVFRGHVGPVYQIRFE 411 (456)
Q Consensus 336 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~s~~--~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~ 411 (456)
+.|+.|+|||................+|.++.|-|...+ ||+++ .|-.|+|||++..- +..++..|...++.+
T Consensus 239 GRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i--- 315 (839)
T KOG0269|consen 239 GRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGI--- 315 (839)
T ss_pred CCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccce---
Confidence 999999999977554333333344578999999997665 77765 56789999998743 466888999999999
Q ss_pred eeeeecCCCCceeeecccccccceeEec-CCCeEEEeeCCCceE
Q 012799 412 LIYCFRYPSNFYCVVDMSCCMSLYSWSA-DSRLLLSGSKDSTLK 454 (456)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~s~s~Dg~v~ 454 (456)
+|-. |-..|.+++.||+|.
T Consensus 316 ------------------------~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 316 ------------------------AWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred ------------------------eccCCCceeeEeecCccHHH
Confidence 5543 456788888888763
No 124
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.8e-27 Score=195.08 Aligned_cols=261 Identities=18% Similarity=0.312 Sum_probs=210.6
Q ss_pred cceEEEeecc--cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEE
Q 012799 89 QAVFRIRPVN--RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV 166 (456)
Q Consensus 89 ~~~~~~~~~~--~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 166 (456)
+..+++|... .|..++..|.+.|..|++.. ..+++++.|++|+.|.++. .+..++. ....+..+.-+..+..++
T Consensus 88 DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~til-g~s~~~gIdh~~~~~~Fa 163 (433)
T KOG0268|consen 88 DGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTIL-GKSVYLGIDHHRKNSVFA 163 (433)
T ss_pred CceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeee-cccccccccccccccccc
Confidence 4556777654 48899999999999999987 6688999999999999875 4666665 445677777777788899
Q ss_pred EEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEE
Q 012799 167 SGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCV 246 (456)
Q Consensus 167 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 246 (456)
|||. .|.|||.+...++. .+.-....|.++.|+|.. ...|++++.|+.|.+||+++++++..+. -...-+.+
T Consensus 164 TcGe--~i~IWD~~R~~Pv~-smswG~Dti~svkfNpvE----TsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~I 235 (433)
T KOG0268|consen 164 TCGE--QIDIWDEQRDNPVS-SMSWGADSISSVKFNPVE----TSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTI 235 (433)
T ss_pred ccCc--eeeecccccCCccc-eeecCCCceeEEecCCCc----chheeeeccCCceEEEecccCCccceee-eeccccce
Confidence 9886 59999998877766 344445678999999963 3578888899999999999998877664 24456789
Q ss_pred EeCCCC-eEEEEeCCCcEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhc
Q 012799 247 KWGGDG-VIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324 (456)
Q Consensus 247 ~~~~~~-~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (456)
+|+|++ .+++|..|..++.||++.- .++....+|.+.|.++.|+|.
T Consensus 236 swnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfspt-------------------------------- 283 (433)
T KOG0268|consen 236 CWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPT-------------------------------- 283 (433)
T ss_pred ecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCC--------------------------------
Confidence 999977 8999999999999999874 567788899999999999998
Q ss_pred cCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEE
Q 012799 325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV 397 (456)
Q Consensus 325 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~ 397 (456)
|+-+++|+.|.+|+||..+.+...-......-..|.++.||.|.+|+++||.|+.|++|.....+.+..
T Consensus 284 ----G~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv 352 (433)
T KOG0268|consen 284 ----GQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGV 352 (433)
T ss_pred ----cchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCC
Confidence 556999999999999997765543332333345699999999999999999999999999776554443
No 125
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=2.3e-25 Score=202.51 Aligned_cols=338 Identities=18% Similarity=0.233 Sum_probs=244.7
Q ss_pred EEEEEECCC--CCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799 111 VLSVAFSPD--GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (456)
Q Consensus 111 V~~~~~s~~--~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 188 (456)
|+++. +|. -+.++.|+.+|.+.+|++++++.+.+++++...|+++.-+|-=..++.|..+|+|.+++++.++.+. .
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~-s 239 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILM-S 239 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEE-E
Confidence 77664 443 2568899999999999999999999999999999999999988899999999999999999998875 2
Q ss_pred ccCcccceEEEEecccccCCCCC-EEEEEeCCCcEEEEECCCCeEEEEec-CcCccEEEEEeCCCC-eEEEEeCCCcEEE
Q 012799 189 LSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGGDG-VIYTGSQDCTIKV 265 (456)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~~dg~i~i 265 (456)
+....+.|++++|.. ||. .+++|+..|.+.+||++..+.+..+. .|.+.|....|.+.. .+++++.|+.+++
T Consensus 240 Fk~d~g~VtslSFrt-----DG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~ 314 (910)
T KOG1539|consen 240 FKQDWGRVTSLSFRT-----DGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKV 314 (910)
T ss_pred EEccccceeEEEecc-----CCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeE
Confidence 332258999999987 665 45666677999999999988877765 788999999999877 9999999999888
Q ss_pred EECCCC----eEEEEeecCCcceEEEEecCcc--eeeeccccCCCCccCChHHHHHHHHhh-------------------
Q 012799 266 WETTQG----KLIRELKGHGHWVNSLALSTEY--ALRTGAFDHTGKQYSSPEEMKKAALER------------------- 320 (456)
Q Consensus 266 wd~~~~----~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 320 (456)
|=..++ +.++.-.+|..+..++.+.... .+.+...+...+.+....+........
T Consensus 315 ~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k 394 (910)
T KOG1539|consen 315 WVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLK 394 (910)
T ss_pred EEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhc
Confidence 855543 4456667788888888876332 233333343333322221111111000
Q ss_pred ---------------------------------------------------------hhhccCCCCCEEEEEeCCCcEEE
Q 012799 321 ---------------------------------------------------------YNKIKGNAPERLVSGSDDFTMFL 343 (456)
Q Consensus 321 ---------------------------------------------------------~~~~~~~~~~~l~~~~~dg~i~i 343 (456)
........|++.+.|...|.|-+
T Consensus 395 ~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~ 474 (910)
T KOG1539|consen 395 LPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDR 474 (910)
T ss_pred CCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEE
Confidence 00013455777888999999999
Q ss_pred EecCCCCCCccc--cccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeee---eeeecC
Q 012799 344 WEPAVSKQPKTR--MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL---IYCFRY 418 (456)
Q Consensus 344 wd~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~---~~~~~~ 418 (456)
|++..+-..... -..|..+|+.++...-++.+++++.+|.+++||.+...++..++. ..++..+.+.. ......
T Consensus 475 fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ 553 (910)
T KOG1539|consen 475 FNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIAL 553 (910)
T ss_pred EEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhc
Confidence 997765433322 258999999999999899999999999999999988876666552 22233332221 111222
Q ss_pred CCCceeeec------------ccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 419 PSNFYCVVD------------MSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 419 ~~~~~~~~~------------~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
....+.+.| ....++.++|||||++|++++.|++||+|
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~w 603 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTW 603 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEE
Confidence 222222222 23446677999999999999999999999
No 126
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1e-27 Score=216.01 Aligned_cols=242 Identities=20% Similarity=0.367 Sum_probs=202.5
Q ss_pred cEEEEEECC-CCCeEEEEECCCcEEEEeCCC---CcceeEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCC
Q 012799 110 AVLSVAFSP-DGRQLASGSGDTTVRLWDLNT---QTPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGKP 184 (456)
Q Consensus 110 ~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~ 184 (456)
.+..+.|+. +.++|||++..|.|.+||+.. .+.+..+..|+..+.++.|++ ...+|++|+.||+|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 345667774 467999999999999999987 566677889999999999998 567899999999999999998876
Q ss_pred ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC-eEEEEecCcCccEEEEEeCCCC-eEEEEeCCCc
Q 012799 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCT 262 (456)
Q Consensus 185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~ 262 (456)
.. ...+....|..+.|+|. .+..|+++...|.+++||++.. ++...+.+|.++|.|+.|+|++ +|++|+.|++
T Consensus 169 ~~-t~~~nSESiRDV~fsp~----~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~ 243 (839)
T KOG0269|consen 169 KS-TFRSNSESIRDVKFSPG----YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM 243 (839)
T ss_pred cc-cccccchhhhceeeccC----CCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc
Confidence 65 56667888999999995 5789999999999999999865 5667788999999999999988 9999999999
Q ss_pred EEEEECCCCeEE--EEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe--CC
Q 012799 263 IKVWETTQGKLI--RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS--DD 338 (456)
Q Consensus 263 i~iwd~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d 338 (456)
|+|||..+++.. .++. ...++..+.|-|... ..|++++ .|
T Consensus 244 vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~-----------------------------------~hLAtcsmv~d 287 (839)
T KOG0269|consen 244 VKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARS-----------------------------------YHLATCSMVVD 287 (839)
T ss_pred EEEEeccCCCccceeEEe-ecceeeeeeeccCcc-----------------------------------chhhhhhcccc
Confidence 999999866543 3333 457899999999843 3466655 47
Q ss_pred CcEEEEecCCCCCCccccccccccEeEEEECC-CCCEEEEEECCCcEEEEeCCCC
Q 012799 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTG 392 (456)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~ 392 (456)
-.|+|||++..-.+...+..|...++.++|.. |...+.+++.||.|..-.++++
T Consensus 288 tsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 288 TSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 78999999999999999999999999999976 4556889999998876655544
No 127
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=1.7e-25 Score=190.09 Aligned_cols=286 Identities=19% Similarity=0.285 Sum_probs=216.5
Q ss_pred ccccCCcccEEEEEECCCC--CeEEEEECCCcEEEEeCCCCc----ceeEEecCCCCEEEEEEcC-CCCEEEEEeCCCeE
Q 012799 102 ATIAGHTEAVLSVAFSPDG--RQLASGSGDTTVRLWDLNTQT----PMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGEL 174 (456)
Q Consensus 102 ~~l~~h~~~V~~~~~s~~~--~~l~~~~~d~~v~vwd~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i 174 (456)
...+-|.+.|++++|+|.. +++|+|..-|.|-+||+.+.+ .+..+..|..+|.++.|+| +...+++.+.||+|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 3456689999999999964 588999999999999995332 3456678999999999999 56789999999999
Q ss_pred EEEeCCCCCCccccccC--cccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE-EEEecCcCccEEEEEeCCC
Q 012799 175 QCWDPQTGKPSGNPLSG--HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICLSGHTLAVTCVKWGGD 251 (456)
Q Consensus 175 ~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~ 251 (456)
++-|++.+.... .+.. .......+.|+. +...+++++.=|...+||.+++.. ...+.-|...|..++++|.
T Consensus 260 R~~D~~~~i~e~-v~s~~~d~~~fs~~d~~~-----e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~ 333 (498)
T KOG4328|consen 260 RLQDFEGNISEE-VLSLDTDNIWFSSLDFSA-----ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPV 333 (498)
T ss_pred eeeeecchhhHH-HhhcCccceeeeeccccC-----CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCC
Confidence 999998765322 2222 333445555554 667778888878999999998665 5566778889999999997
Q ss_pred C--eEEEEeCCCcEEEEECCCCeE----EEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhcc
Q 012799 252 G--VIYTGSQDCTIKVWETTQGKL----IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325 (456)
Q Consensus 252 ~--~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (456)
. .+++++.|++.+|||++.-.. +.....|...|.+..|+|.
T Consensus 334 ~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs--------------------------------- 380 (498)
T KOG4328|consen 334 CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPS--------------------------------- 380 (498)
T ss_pred CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCC---------------------------------
Confidence 7 899999999999999986432 2233458899999999998
Q ss_pred CCCCCEEEEEeCCCcEEEEecC---CCCCCcccccccc----c--cEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEE
Q 012799 326 GNAPERLVSGSDDFTMFLWEPA---VSKQPKTRMTGHQ----Q--LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396 (456)
Q Consensus 326 ~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~----~--~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~ 396 (456)
+..|++.+.|..|+|||.. ....+...+ .|. . ......|.|+..++++|-.-..|-|+|-..++.+.
T Consensus 381 ---~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I-~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~ 456 (498)
T KOG4328|consen 381 ---GGTLLTTCQDNEIRVFDSSCISAKDEPLGTI-PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVC 456 (498)
T ss_pred ---CCceEeeccCCceEEeecccccccCCcccee-eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEee
Confidence 3349999999999999963 222222222 222 1 23456899999999999999999999998888877
Q ss_pred EEecccc-cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCC-eEEEeeCCCceEEC
Q 012799 397 VFRGHVG-PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGSKDSTLKVT 456 (456)
Q Consensus 397 ~~~~~~~-~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~s~s~Dg~v~iW 456 (456)
.+..... .|.++. .|+|-+. +++.++..|.|+||
T Consensus 457 el~~P~~~tI~~vn--------------------------~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 457 ELHDPESSTIPSVN--------------------------EFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred eccCccccccccce--------------------------eecccccceeccCCccceEEEE
Confidence 7654433 455441 7899988 44455568888887
No 128
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=9.3e-25 Score=176.70 Aligned_cols=233 Identities=18% Similarity=0.284 Sum_probs=189.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC
Q 012799 149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228 (456)
Q Consensus 149 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 228 (456)
....|..+.|+|.++.|++++.||++++||....... ....|..++.+++|.+ ...+++|+.||.|+.+|++
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~--~~~~~~~plL~c~F~d------~~~~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK--LKFKHGAPLLDCAFAD------ESTIVTGGLDGQVRRYDLN 83 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh--hheecCCceeeeeccC------CceEEEeccCceEEEEEec
Confidence 4678999999999999999999999999999887544 4567899999999975 4589999999999999999
Q ss_pred CCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCcc
Q 012799 229 LRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQY 307 (456)
Q Consensus 229 ~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 307 (456)
++.... +..|..+|.|+.+.+.. .+++|+.|++|++||.+.......+.. ...|.++...
T Consensus 84 ~~~~~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~----------------- 144 (323)
T KOG1036|consen 84 TGNEDQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS----------------- 144 (323)
T ss_pred CCccee-eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc-----------------
Confidence 887544 45699999999999744 999999999999999997555555543 3367777765
Q ss_pred CChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccc-cccccccEeEEEECCCCCEEEEEECCCcEEE
Q 012799 308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR-MTGHQQLVNHVYFSPDGQWVASASFDKSIKL 386 (456)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~i 386 (456)
++.|+.|+.+..+.+||+++...+.+. ...-...++++++-|++.=.+.++-||+|.+
T Consensus 145 ---------------------g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVav 203 (323)
T KOG1036|consen 145 ---------------------GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAV 203 (323)
T ss_pred ---------------------CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEE
Confidence 456999999999999999987665432 2344567999999998877899999999888
Q ss_pred EeCCCC----eEEEEEecccc---------cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCce
Q 012799 387 WNGTTG----KFVAVFRGHVG---------PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL 453 (456)
Q Consensus 387 wd~~~~----~~~~~~~~~~~---------~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v 453 (456)
=.+... +.-..|+.|.. ||+++ +|+|--..|+|||.||.|
T Consensus 204 E~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai---------------------------~Fhp~~~tfaTgGsDG~V 256 (323)
T KOG1036|consen 204 EYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAI---------------------------AFHPIHGTFATGGSDGIV 256 (323)
T ss_pred EccCCchHHhhhceeEEeeecccCCceEEEEecee---------------------------EeccccceEEecCCCceE
Confidence 766654 44556666653 45555 999999999999999999
Q ss_pred EEC
Q 012799 454 KVT 456 (456)
Q Consensus 454 ~iW 456 (456)
.+|
T Consensus 257 ~~W 259 (323)
T KOG1036|consen 257 NIW 259 (323)
T ss_pred EEc
Confidence 999
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=7e-24 Score=189.24 Aligned_cols=262 Identities=18% Similarity=0.165 Sum_probs=192.6
Q ss_pred CCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCCccccccCcccceEE
Q 012799 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITG 198 (456)
Q Consensus 120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 198 (456)
++++++++.|+.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||..+++.... +..+ ..+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-~~~~-~~~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT-LPSG-PDPEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe-ccCC-CCccE
Confidence 3578899999999999999998888887654 46789999999876 5667889999999998876542 2222 23467
Q ss_pred EEecccccCCCCCEEEEE-eCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCC-cEEEEECCCCeEEE
Q 012799 199 ISWEPVHLNAPCRRFVSA-SKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC-TIKVWETTQGKLIR 275 (456)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg-~i~iwd~~~~~~~~ 275 (456)
+.|+| +++.++++ +.++.+++||+.+.+.+..+.. ...+.+++|+|++ .++++..++ .+..||..+++...
T Consensus 78 ~~~~~-----~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~ 151 (300)
T TIGR03866 78 FALHP-----NGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD 151 (300)
T ss_pred EEECC-----CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE
Confidence 78888 77777554 5689999999999887776653 3446889999999 777776664 56778998887766
Q ss_pred EeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEE-EEeCCCcEEEEecCCCCCCcc
Q 012799 276 ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV-SGSDDFTMFLWEPAVSKQPKT 354 (456)
Q Consensus 276 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~ 354 (456)
.+.. ......++++++ +..++ ++..++.|++||+.+.....
T Consensus 152 ~~~~-~~~~~~~~~s~d------------------------------------g~~l~~~~~~~~~v~i~d~~~~~~~~- 193 (300)
T TIGR03866 152 NVLV-DQRPRFAEFTAD------------------------------------GKELWVSSEIGGTVSVIDVATRKVIK- 193 (300)
T ss_pred EEEc-CCCccEEEECCC------------------------------------CCEEEEEcCCCCEEEEEEcCcceeee-
Confidence 5542 234566788877 44464 44569999999987654322
Q ss_pred cccc-----c--cccEeEEEECCCCCEEEE-EECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeee
Q 012799 355 RMTG-----H--QQLVNHVYFSPDGQWVAS-ASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV 426 (456)
Q Consensus 355 ~~~~-----~--~~~v~~~~~sp~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~ 426 (456)
.+.. + ......++|+|+++++++ .+.++.+.+||+.+++.+..+. +...+.++
T Consensus 194 ~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~------------------ 254 (300)
T TIGR03866 194 KITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQL------------------ 254 (300)
T ss_pred eeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceE------------------
Confidence 1111 1 112356889999998554 4556789999999988776554 34467777
Q ss_pred cccccccceeEecCCCeEEEe-eCCCceEEC
Q 012799 427 DMSCCMSLYSWSADSRLLLSG-SKDSTLKVT 456 (456)
Q Consensus 427 ~~~~~~~~~~~s~dg~~l~s~-s~Dg~v~iW 456 (456)
+|+|+|++|+++ +.+|.|+||
T Consensus 255 ---------~~~~~g~~l~~~~~~~~~i~v~ 276 (300)
T TIGR03866 255 ---------AFTPDEKYLLTTNGVSNDVSVI 276 (300)
T ss_pred ---------EECCCCCEEEEEcCCCCeEEEE
Confidence 899999999886 569999998
No 130
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.7e-27 Score=212.99 Aligned_cols=238 Identities=29% Similarity=0.484 Sum_probs=213.3
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 012799 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (456)
Q Consensus 102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 181 (456)
+.+..|...|.++..-..++.+++|+.|-.+.+|.+..-..+..+.+|..+|.++.|+++..+|++|+.+|+|++||++.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 45667999999999977889999999999999999988888888999999999999999999999999999999999999
Q ss_pred CCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCC
Q 012799 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD 260 (456)
Q Consensus 182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d 260 (456)
++.+. .+.+|...+..+.|+| -+.+++.|+.|+.+++||++...|...+.+|...+.++.|+|+| +++.++.|
T Consensus 102 Ak~vr-tLtgh~~~~~sv~f~P-----~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed 175 (825)
T KOG0267|consen 102 AKIVR-TLTGHLLNITSVDFHP-----YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGED 175 (825)
T ss_pred hhhhh-hhhccccCcceeeecc-----ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCc
Confidence 88776 7899999999999999 77899999999999999999999999999999999999999999 88999999
Q ss_pred CcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCc
Q 012799 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (456)
Q Consensus 261 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 340 (456)
..+++||+..|+....|..|...+.++.++|... .++.|+.|++
T Consensus 176 ~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~------------------------------------Lla~Gs~d~t 219 (825)
T KOG0267|consen 176 NTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEV------------------------------------LLAPGSSDRT 219 (825)
T ss_pred ceeeeecccccccccccccccccccccccCchhh------------------------------------hhccCCCCce
Confidence 9999999999999999999999999999998743 3889999999
Q ss_pred EEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCC
Q 012799 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382 (456)
Q Consensus 341 i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg 382 (456)
+++||+++-.. +.........|.+.+|+|++..+++|....
T Consensus 220 v~f~dletfe~-I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 220 VRFWDLETFEV-ISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeeeccceeEE-eeccCCccCCceeeeecCCceeeecCchhh
Confidence 99999875432 222334467799999999999888886554
No 131
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=3.9e-24 Score=183.96 Aligned_cols=280 Identities=20% Similarity=0.340 Sum_probs=215.3
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEE---ec-CCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 012799 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC---TG-HKNWVLCIAWSADGKHLVSGSKAGELQ 175 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~---~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~ 175 (456)
.....+..++.|....|+|.+.-|......+.+.+|+.+++....+. .. ....|.|++|.++|+ +++|..+|.|.
T Consensus 192 ~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~ 270 (626)
T KOG2106|consen 192 KLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNIL 270 (626)
T ss_pred ccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEE
Confidence 34455567788999999997765665556789999999887654432 22 236799999999886 78999999999
Q ss_pred EEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe------------------------
Q 012799 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK------------------------ 231 (456)
Q Consensus 176 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------------------------ 231 (456)
||+..+.+...... .|.+.|.+++... +| .|++|+.|..|..||-.-.+
T Consensus 271 Iw~~~~~~~~k~~~-aH~ggv~~L~~lr-----~G-tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~ 343 (626)
T KOG2106|consen 271 IWSKGTNRISKQVH-AHDGGVFSLCMLR-----DG-TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDIL 343 (626)
T ss_pred EEeCCCceEEeEee-ecCCceEEEEEec-----Cc-cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEE
Confidence 99998777666555 9999999999876 66 45569999999999832000
Q ss_pred ----------------EEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcce
Q 012799 232 ----------------CVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294 (456)
Q Consensus 232 ----------------~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 294 (456)
......+|......++.+|+. .+++++.|+.+++|+ ..++..+.. -..+..++.|+|.
T Consensus 344 vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhps-- 418 (626)
T KOG2106|consen 344 VGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPS-- 418 (626)
T ss_pred EeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCc--
Confidence 001123577788889999977 999999999999999 444444443 4567889999987
Q ss_pred eeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCE
Q 012799 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW 374 (456)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 374 (456)
+ .++.|+..|...+.|..+ ...+..... ..+++++.|+|+|.+
T Consensus 419 ----------------------------------g-~va~Gt~~G~w~V~d~e~-~~lv~~~~d-~~~ls~v~ysp~G~~ 461 (626)
T KOG2106|consen 419 ----------------------------------G-VVAVGTATGRWFVLDTET-QDLVTIHTD-NEQLSVVRYSPDGAF 461 (626)
T ss_pred ----------------------------------c-eEEEeeccceEEEEeccc-ceeEEEEec-CCceEEEEEcCCCCE
Confidence 3 599999999999999766 333433333 789999999999999
Q ss_pred EEEEECCCcEEEEeCCCC-eEEEEE-ecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCc
Q 012799 375 VASASFDKSIKLWNGTTG-KFVAVF-RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDST 452 (456)
Q Consensus 375 l~s~~~dg~i~iwd~~~~-~~~~~~-~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~ 452 (456)
||.|+.|+.|+||.+... ...... +.+..+|+.+ .||+|+++|.+-+-|-.
T Consensus 462 lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithL---------------------------DwS~Ds~~~~~~S~d~e 514 (626)
T KOG2106|consen 462 LAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHL---------------------------DWSSDSQFLVSNSGDYE 514 (626)
T ss_pred EEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEe---------------------------eecCCCceEEeccCceE
Confidence 999999999999988764 333322 2333678888 99999999999999988
Q ss_pred eEEC
Q 012799 453 LKVT 456 (456)
Q Consensus 453 v~iW 456 (456)
|-.|
T Consensus 515 iLyW 518 (626)
T KOG2106|consen 515 ILYW 518 (626)
T ss_pred EEEE
Confidence 8777
No 132
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.6e-26 Score=206.56 Aligned_cols=203 Identities=24% Similarity=0.420 Sum_probs=171.8
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEe
Q 012799 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWD 178 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd 178 (456)
+.+.+.||.+.|..+.||.++ +|++++.|++|++|++...+++..+. |.+.|+|++|+| |.+|+++|+-||.|+||+
T Consensus 361 P~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWs 438 (712)
T KOG0283|consen 361 PFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWS 438 (712)
T ss_pred chhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEee
Confidence 457899999999999999864 79999999999999999999999887 999999999999 889999999999999999
Q ss_pred CCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec--------CcCccEEEEEeCC
Q 012799 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--------GHTLAVTCVKWGG 250 (456)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~~~ 250 (456)
+...+.+. ...-..-|++++|.| +|+..++|+.+|.+++|+....+...... .....|+.+.+.|
T Consensus 439 I~d~~Vv~--W~Dl~~lITAvcy~P-----dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p 511 (712)
T KOG0283|consen 439 ISDKKVVD--WNDLRDLITAVCYSP-----DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFP 511 (712)
T ss_pred cCcCeeEe--ehhhhhhheeEEecc-----CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecC
Confidence 98877653 444558899999999 99999999999999999998777654432 1123799999998
Q ss_pred CC--eEEEEeCCCcEEEEECCCCeEEEEeecCCcce--EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccC
Q 012799 251 DG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWV--NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326 (456)
Q Consensus 251 ~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (456)
.. .+++.+.|..|+|||.++..++..+++....- ....|+.+
T Consensus 512 ~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~D---------------------------------- 557 (712)
T KOG0283|consen 512 GDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSD---------------------------------- 557 (712)
T ss_pred CCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccC----------------------------------
Confidence 65 79999999999999999888888887643321 22334444
Q ss_pred CCCCEEEEEeCCCcEEEEecC
Q 012799 327 NAPERLVSGSDDFTMFLWEPA 347 (456)
Q Consensus 327 ~~~~~l~~~~~dg~i~iwd~~ 347 (456)
+++|+++++|..|++|+..
T Consensus 558 --gk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 558 --GKHIVSASEDSWVYIWKND 576 (712)
T ss_pred --CCEEEEeecCceEEEEeCC
Confidence 7889999999999999963
No 133
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=2.8e-27 Score=211.56 Aligned_cols=255 Identities=24% Similarity=0.443 Sum_probs=222.3
Q ss_pred CCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEE
Q 012799 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI 199 (456)
Q Consensus 120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 199 (456)
+.+++....+-.+++|+.+. +..|...+.++..-..++.+++|+.|..+.+|.+..-..+. .+.+|..+|.++
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~-S~~~hespIeSl 76 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT-SLTGHESPIESL 76 (825)
T ss_pred ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh-eeeccCCcceee
Confidence 33445555566678888653 33588888888887788899999999999999987666554 478999999999
Q ss_pred EecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEee
Q 012799 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK 278 (456)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~ 278 (456)
.|++ ...++++|+.+|+|++||++..+.++++.+|...+..+.|+|-+ +++.|+.|+.+++||.+...+...+.
T Consensus 77 ~f~~-----~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~ 151 (825)
T KOG0267|consen 77 TFDT-----SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK 151 (825)
T ss_pred ecCc-----chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec
Confidence 9998 77899999999999999999999999999999999999999999 78889999999999999888999999
Q ss_pred cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccccc
Q 012799 279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG 358 (456)
Q Consensus 279 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 358 (456)
+|...+..+.++|+ |.+++.|++|..+++||...+ .....+..
T Consensus 152 s~~~vv~~l~lsP~------------------------------------Gr~v~~g~ed~tvki~d~~ag-k~~~ef~~ 194 (825)
T KOG0267|consen 152 SHTRVVDVLRLSPD------------------------------------GRWVASGGEDNTVKIWDLTAG-KLSKEFKS 194 (825)
T ss_pred CCcceeEEEeecCC------------------------------------CceeeccCCcceeeeeccccc-cccccccc
Confidence 99999999999998 556999999999999996554 46667889
Q ss_pred ccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEe
Q 012799 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWS 438 (456)
Q Consensus 359 ~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 438 (456)
|...+..+.|+|..-++++|+.|+++++||+++.+.+.........|.+. +|+
T Consensus 195 ~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~---------------------------~fn 247 (825)
T KOG0267|consen 195 HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSL---------------------------AFN 247 (825)
T ss_pred ccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceee---------------------------eec
Confidence 99999999999999999999999999999999999988888778888888 789
Q ss_pred cCCCeEEEeeCC
Q 012799 439 ADSRLLLSGSKD 450 (456)
Q Consensus 439 ~dg~~l~s~s~D 450 (456)
|+++.+++|-.+
T Consensus 248 ~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 248 PDGKIVLSGEQI 259 (825)
T ss_pred CCceeeecCchh
Confidence 999888887654
No 134
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.4e-24 Score=190.03 Aligned_cols=274 Identities=22% Similarity=0.312 Sum_probs=218.6
Q ss_pred cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce-eEEec-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCc
Q 012799 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-FKCTG-HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 185 (456)
..+|+++||+.+.+.||.+-.||.|-+|++..+-.. ..+.+ ....|.+++|+ ++..|++.+.+|.|.-||+.++++.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCcee
Confidence 457999999999999999999999999999875332 33444 45789999999 5667889999999999999999877
Q ss_pred cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEE--EecCcCccEEEEEeCCCC-eEEEEeCCCc
Q 012799 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI--CLSGHTLAVTCVKWGGDG-VIYTGSQDCT 262 (456)
Q Consensus 186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~-~l~~~~~dg~ 262 (456)
. ......+.|++++.+| .+..++.|+.||.+..++...++... .+....+.|.+++|+|++ .+++|+.||.
T Consensus 104 ~-~~d~~gg~IWsiai~p-----~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~ 177 (691)
T KOG2048|consen 104 Y-NIDSNGGAIWSIAINP-----ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV 177 (691)
T ss_pred E-EecCCCcceeEEEeCC-----ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce
Confidence 6 4666778999999999 77899999999988888888776554 344557899999999999 7999999999
Q ss_pred EEEEECCCCeEEEEeec--------CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799 263 IKVWETTQGKLIRELKG--------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (456)
Q Consensus 263 i~iwd~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (456)
|++||..++..+..... ...-|.++.+-. ...+++
T Consensus 178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-------------------------------------d~tI~s 220 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-------------------------------------DSTIAS 220 (691)
T ss_pred EEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-------------------------------------cCcEEE
Confidence 99999999887763321 122244444332 345999
Q ss_pred EeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeE----EEEEecccccEEEEEe
Q 012799 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF----VAVFRGHVGPVYQIRF 410 (456)
Q Consensus 335 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~i~~ 410 (456)
|...|+|.+||... ....+....|...|.+++.++++.++++++.|+.|.-|...++.. ......|...|.++
T Consensus 221 gDS~G~V~FWd~~~-gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~-- 297 (691)
T KOG2048|consen 221 GDSAGTVTFWDSIF-GTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSM-- 297 (691)
T ss_pred ecCCceEEEEcccC-cchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceee--
Confidence 99999999999554 456677888999999999999999999999999999998776533 22334677788888
Q ss_pred eeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799 411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i 455 (456)
+..++ .|++||.|..+.+
T Consensus 298 -------------------------av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 298 -------------------------AVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred -------------------------eeecc--eEEecceeeEEEE
Confidence 44554 8888888888765
No 135
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=3.2e-25 Score=183.92 Aligned_cols=245 Identities=26% Similarity=0.479 Sum_probs=195.3
Q ss_pred cccCCcccEEEEEECCCC--CeEEEEECCCcEEEEeCCC----------------CcceeEEecCCCCEEEEEEcC-CCC
Q 012799 103 TIAGHTEAVLSVAFSPDG--RQLASGSGDTTVRLWDLNT----------------QTPMFKCTGHKNWVLCIAWSA-DGK 163 (456)
Q Consensus 103 ~l~~h~~~V~~~~~s~~~--~~l~~~~~d~~v~vwd~~~----------------~~~~~~~~~~~~~v~~~~~~~-~~~ 163 (456)
...+|.+.|+.+.-++-+ .+.|+-+..|.|+||++.. .+++.++.+|...=+.++||| ...
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 345788999998888865 4566667899999999753 357788889999999999999 233
Q ss_pred EEEEEeCCCeEEEEeCCCCCC--ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC---eEEEEecC
Q 012799 164 HLVSGSKAGELQCWDPQTGKP--SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR---KCVICLSG 238 (456)
Q Consensus 164 ~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~ 238 (456)
.|++|..-+.|++|...+|.- -...+.+|...|..++|+|. ....|++|+.||+|+|||++.+ .++.. +.
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSpt----E~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kA 300 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPT----EDGVFASCSCDGSIRIWDIRSGPKKAAVST-KA 300 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCc----cCceEEeeecCceEEEEEecCCCccceeEe-ec
Confidence 588888888999999988753 22357789999999999996 4468999999999999999987 33433 78
Q ss_pred cCccEEEEEeCCCC-eEEEEeCCCcEEEEECCC---CeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHH
Q 012799 239 HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQ---GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK 314 (456)
Q Consensus 239 ~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (456)
|.+.|+.+.|+... +|++|+.||+++|||+++ ++++..++.|..+|+++.|+|..
T Consensus 301 h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e--------------------- 359 (440)
T KOG0302|consen 301 HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHE--------------------- 359 (440)
T ss_pred cCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecccc---------------------
Confidence 99999999999876 899999999999999986 57888999999999999999973
Q ss_pred HHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC---------------Cccccccc--cccEeEEEECCC-CCEEE
Q 012799 315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ---------------PKTRMTGH--QQLVNHVYFSPD-GQWVA 376 (456)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---------------~~~~~~~~--~~~v~~~~~sp~-~~~l~ 376 (456)
...|++++.|..|.+||+..... +.+.+.-| +..+..+.|++. -.+|+
T Consensus 360 --------------~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lv 425 (440)
T KOG0302|consen 360 --------------DSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLV 425 (440)
T ss_pred --------------CceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEE
Confidence 45589999999999999754321 11223334 346788899984 34788
Q ss_pred EEECCCcEEEEe
Q 012799 377 SASFDKSIKLWN 388 (456)
Q Consensus 377 s~~~dg~i~iwd 388 (456)
+.+.|| +.||.
T Consensus 426 sTa~dG-fnVfk 436 (440)
T KOG0302|consen 426 STAIDG-FNVFK 436 (440)
T ss_pred Eecccc-eeEEE
Confidence 888888 45553
No 136
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=2.7e-25 Score=198.77 Aligned_cols=249 Identities=22% Similarity=0.285 Sum_probs=207.5
Q ss_pred cccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcC---CCCEEEEEeCCCeEEEEeC
Q 012799 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA---DGKHLVSGSKAGELQCWDP 179 (456)
Q Consensus 103 ~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~dg~i~vwd~ 179 (456)
.+.+....|.+++.+|+|++||+|..-|+++||++.+.+....+..|+..|.|+.|+. ..++||++++|..|+|||.
T Consensus 454 s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv 533 (1080)
T KOG1408|consen 454 STCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDV 533 (1080)
T ss_pred hhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEec
Confidence 3445667899999999999999999999999999999888888999999999999985 4679999999999999999
Q ss_pred CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC-----cCccEEEEEeCCCC-e
Q 012799 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG-----HTLAVTCVKWGGDG-V 253 (456)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~-~ 253 (456)
...-.+...+.+|...|+++.|-... -...+++++.|..|.+--.....-...+.. ....+..+++.|.. +
T Consensus 534 ~rny~l~qtld~HSssITsvKFa~~g---ln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~ 610 (1080)
T KOG1408|consen 534 KRNYDLVQTLDGHSSSITSVKFACNG---LNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKL 610 (1080)
T ss_pred ccccchhhhhcccccceeEEEEeecC---CceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcce
Confidence 87776667899999999999998722 126789999998776543322111112211 24568899999987 9
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEeec---CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCC
Q 012799 254 IYTGSQDCTIKVWETTQGKLIRELKG---HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330 (456)
Q Consensus 254 l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (456)
+++++.|..|+|||+.+++..+.|++ |.+....+...|. +.
T Consensus 611 v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPS------------------------------------gi 654 (1080)
T KOG1408|consen 611 VVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPS------------------------------------GI 654 (1080)
T ss_pred EEEEecccceEEEeccccceeeeecccccCCCceEEEEECCC------------------------------------cc
Confidence 99999999999999999999999976 4455666777776 66
Q ss_pred EEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCC
Q 012799 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391 (456)
Q Consensus 331 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 391 (456)
|+++.+.|.++.++|...+ +.+..+.+|...|+.+.|.+|.+.|++.+.||.|.||.+..
T Consensus 655 Y~atScsdktl~~~Df~sg-EcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 655 YLATSCSDKTLCFVDFVSG-ECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEEEeecCCceEEEEeccc-hhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 7999999999999997665 46677889999999999999999999999999999999753
No 137
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.94 E-value=4.7e-25 Score=194.78 Aligned_cols=276 Identities=21% Similarity=0.326 Sum_probs=202.6
Q ss_pred EEECCC---CCeEEEEECCCcEEEEeCCCCcc------eeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 012799 114 VAFSPD---GRQLASGSGDTTVRLWDLNTQTP------MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP 184 (456)
Q Consensus 114 ~~~s~~---~~~l~~~~~d~~v~vwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 184 (456)
..|++. ...||.+..||.|.++|...... +.....|...|..+.|.|....|++++.|.++++||++.++.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 566652 34788999999999999865432 345568999999999999778999999999999999998887
Q ss_pred ccc-cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe--------------------E-------EEEe
Q 012799 185 SGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK--------------------C-------VICL 236 (456)
Q Consensus 185 ~~~-~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------------~-------~~~~ 236 (456)
... ...+|...|.+++|.|. +...|++|+.||.|.|||++-.. + +...
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~----n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~ 210 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPT----NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW 210 (720)
T ss_pred ecceeecccccccchhhhccC----CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence 652 47899999999999996 55789999999999999986322 0 1111
Q ss_pred cCcCc----cEEEEEeCCCCeEEEEeC-CCcEEEEECCCCeEEEEee--------cC---CcceEEEEecCcceeeeccc
Q 012799 237 SGHTL----AVTCVKWGGDGVIYTGSQ-DCTIKVWETTQGKLIRELK--------GH---GHWVNSLALSTEYALRTGAF 300 (456)
Q Consensus 237 ~~~~~----~v~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~--------~~---~~~i~~~~~~~~~~~~~~~~ 300 (456)
+.+.. .|+.+.|-.+..|++++. |+.|++||++......... .+ ...+.++....
T Consensus 211 kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs--------- 281 (720)
T KOG0321|consen 211 KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS--------- 281 (720)
T ss_pred ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC---------
Confidence 22322 355566665668888777 9999999999765433221 11 11233333332
Q ss_pred cCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC-CCcccccccccc--EeEEEECCCCCEEEE
Q 012799 301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-QPKTRMTGHQQL--VNHVYFSPDGQWVAS 377 (456)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~--v~~~~~sp~~~~l~s 377 (456)
.|.++++.+.|+.|++|++.... .+...+.++... -..-..+||+.+|++
T Consensus 282 ---------------------------sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~S 334 (720)
T KOG0321|consen 282 ---------------------------SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLS 334 (720)
T ss_pred ---------------------------CCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEec
Confidence 26778888889999999987644 344444444321 122357899999999
Q ss_pred EECCCcEEEEeCCCCeE-EEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCC-CeEEEeeCCCceEE
Q 012799 378 ASFDKSIKLWNGTTGKF-VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLKV 455 (456)
Q Consensus 378 ~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~s~s~Dg~v~i 455 (456)
|+.|...++|.+.+.+. ...+.+|...|+.+ +|.|.. .-++++++|.+++|
T Consensus 335 gSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V---------------------------~w~pS~~t~v~TcSdD~~~ki 387 (720)
T KOG0321|consen 335 GSSDEQAYIWVVSSPEAPPALLLGHTREVTTV---------------------------RWLPSATTPVATCSDDFRVKI 387 (720)
T ss_pred cCCCcceeeeeecCccCChhhhhCcceEEEEE---------------------------eeccccCCCceeeccCcceEE
Confidence 99999999999988654 66778999999999 666532 35677799999999
Q ss_pred C
Q 012799 456 T 456 (456)
Q Consensus 456 W 456 (456)
|
T Consensus 388 W 388 (720)
T KOG0321|consen 388 W 388 (720)
T ss_pred E
Confidence 9
No 138
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=3.8e-24 Score=190.81 Aligned_cols=291 Identities=23% Similarity=0.386 Sum_probs=223.6
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce-------eEEecCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 012799 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-------FKCTGHKNWVLCIAWSADGKHLVSGSKAGEL 174 (456)
Q Consensus 102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 174 (456)
..+.||.+.|.++.|+|.+..|++++.|.++.+|.-.+..-+ -...+.........|+|+++.+++-+..|..
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 345699999999999999999999999999999987654222 1223455678899999999999999999999
Q ss_pred EEEeCCCCC--CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC------------------------
Q 012799 175 QCWDPQTGK--PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS------------------------ 228 (456)
Q Consensus 175 ~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~------------------------ 228 (456)
++|..+... .......+|.+.|.++.|.| .|.++++.+.|.+-+++-.-
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-----sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~ 415 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-----SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSF 415 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecC-----CCCEEEEeccccceeeecccccccceeeecccccccccceeeeh
Confidence 999833221 12235789999999999999 77888888887776665310
Q ss_pred -----------------------------------------------------------------CCeE-----------
Q 012799 229 -----------------------------------------------------------------LRKC----------- 232 (456)
Q Consensus 229 -----------------------------------------------------------------~~~~----------- 232 (456)
++..
T Consensus 416 vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~ 495 (764)
T KOG1063|consen 416 VNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAA 495 (764)
T ss_pred ccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccccc
Confidence 0000
Q ss_pred ----------------------EEEecCcCccEEEEEeCCCC-eEEEEeCCC-----cEEEEECCCCeEEEEeecCCcce
Q 012799 233 ----------------------VICLSGHTLAVTCVKWGGDG-VIYTGSQDC-----TIKVWETTQGKLIRELKGHGHWV 284 (456)
Q Consensus 233 ----------------------~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~i 284 (456)
+..+-+|...|.+++.+|++ .+++++... .|++|+..+...++.+.+|.-.|
T Consensus 496 ~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTV 575 (764)
T KOG1063|consen 496 APCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTV 575 (764)
T ss_pred CchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEE
Confidence 01122788889999999999 777766543 49999999988888999999999
Q ss_pred EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccc---cccccc
Q 012799 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR---MTGHQQ 361 (456)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~ 361 (456)
+.++|+|+ +.+|++.+.|+++.+|........... .+.|..
T Consensus 576 T~l~FSpd------------------------------------g~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtR 619 (764)
T KOG1063|consen 576 TRLAFSPD------------------------------------GRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTR 619 (764)
T ss_pred EEEEECCC------------------------------------CcEEEEeecCceEEeeeeecccchhhhhccccccce
Confidence 99999998 667999999999999986544433333 678999
Q ss_pred cEeEEEECCCCCEEEEEECCCcEEEEeCCCC--eEEEE--EecccccEEEEEeeeeeeecCCCCceeeecccccccceeE
Q 012799 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTG--KFVAV--FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW 437 (456)
Q Consensus 362 ~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~--~~~~~--~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (456)
.|.++.|+|++.+++|+|.|.+|++|..... +.+.. ...+..+|+.+++.+ ..
T Consensus 620 IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~-----------------------~~ 676 (764)
T KOG1063|consen 620 IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLP-----------------------VD 676 (764)
T ss_pred EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeec-----------------------cc
Confidence 9999999999999999999999999998877 43332 235677888883310 11
Q ss_pred ecC-CCeEEEeeCCCceEEC
Q 012799 438 SAD-SRLLLSGSKDSTLKVT 456 (456)
Q Consensus 438 s~d-g~~l~s~s~Dg~v~iW 456 (456)
.++ +..++.|-+.|.|.+|
T Consensus 677 ~~e~~~~vavGle~GeI~l~ 696 (764)
T KOG1063|consen 677 HNEKGDVVAVGLEKGEIVLW 696 (764)
T ss_pred cccccceEEEEecccEEEEE
Confidence 222 2367778889999887
No 139
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=8.4e-23 Score=182.28 Aligned_cols=261 Identities=15% Similarity=0.127 Sum_probs=188.6
Q ss_pred cccccccCCcccEEEEEECCCCCeE-EEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEE-eCCCeEEE
Q 012799 99 RCSATIAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-SKAGELQC 176 (456)
Q Consensus 99 ~~~~~l~~h~~~V~~~~~s~~~~~l-~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~v 176 (456)
++.+.+.+|. .+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++|+|+++.++++ +.++.+++
T Consensus 22 ~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~ 99 (300)
T TIGR03866 22 EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTV 99 (300)
T ss_pred ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEE
Confidence 3445555554 36789999999876 5667889999999998887776665443 5778999999977655 56899999
Q ss_pred EeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC-cEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eE
Q 012799 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG-DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI 254 (456)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l 254 (456)
||+++++.+... .+...+.+++|+| ++..+++++.++ .+.+||.++++....... .....+++|++++ .+
T Consensus 100 ~d~~~~~~~~~~--~~~~~~~~~~~~~-----dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l 171 (300)
T TIGR03866 100 IDIETRKVLAEI--PVGVEPEGMAVSP-----DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKEL 171 (300)
T ss_pred EECCCCeEEeEe--eCCCCcceEEECC-----CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEE
Confidence 999887654322 1223467889988 899999988775 567789988877655432 3345789999999 55
Q ss_pred EE-EeCCCcEEEEECCCCeEEEEeecCCc-------ceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccC
Q 012799 255 YT-GSQDCTIKVWETTQGKLIRELKGHGH-------WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326 (456)
Q Consensus 255 ~~-~~~dg~i~iwd~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (456)
++ +..++.|++||+++++.+..+..+.. ....++++|+
T Consensus 172 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d---------------------------------- 217 (300)
T TIGR03866 172 WVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD---------------------------------- 217 (300)
T ss_pred EEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC----------------------------------
Confidence 44 45689999999999887766543211 1234556665
Q ss_pred CCCCEE-EEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEE-ECCCcEEEEeCCCCeEEEEEeccccc
Q 012799 327 NAPERL-VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGTTGKFVAVFRGHVGP 404 (456)
Q Consensus 327 ~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~ 404 (456)
++++ ++...++.+.+||..+... .... .+...+.+++|+|+|++|+++ +.+|.|++||+.+++.+..++... .
T Consensus 218 --g~~~~~~~~~~~~i~v~d~~~~~~-~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~ 292 (300)
T TIGR03866 218 --GKTAFVALGPANRVAVVDAKTYEV-LDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGR-L 292 (300)
T ss_pred --CCEEEEEcCCCCeEEEEECCCCcE-EEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccc-c
Confidence 4444 4445567899999765432 2222 234568999999999998876 468999999999999999888654 4
Q ss_pred EEEE
Q 012799 405 VYQI 408 (456)
Q Consensus 405 v~~i 408 (456)
.+++
T Consensus 293 ~~~~ 296 (300)
T TIGR03866 293 PWGV 296 (300)
T ss_pred ccee
Confidence 4777
No 140
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=9.2e-24 Score=194.31 Aligned_cols=238 Identities=16% Similarity=0.301 Sum_probs=200.2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEEC
Q 012799 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV 227 (456)
Q Consensus 148 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 227 (456)
.|...-+.++|.|+|.+|++++.||.|++|+..+.......+..+...|.+++- .+.+|++|+.+++|.+|.+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~-------~s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC-------YSNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee-------cccceEEeeccceEEEeeC
Confidence 588889999999999999999999999999987663222234446777887775 4569999999999999999
Q ss_pred CCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCc
Q 012799 228 SLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ 306 (456)
Q Consensus 228 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 306 (456)
.+++.-..+....-++++++++.+| +++.|+.|-.|++-++........+.+|..+|.++.++|.
T Consensus 84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~-------------- 149 (933)
T KOG1274|consen 84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPK-------------- 149 (933)
T ss_pred CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCC--------------
Confidence 9887766666677899999999999 9999999999999999999999999999999999999998
Q ss_pred cCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccc--------cccccEeEEEECCCCCEEEEE
Q 012799 307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT--------GHQQLVNHVYFSPDGQWVASA 378 (456)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~v~~~~~sp~~~~l~s~ 378 (456)
+++|++.+.||.|++||+...... ..+. .....+..++|+|+|..++..
T Consensus 150 ----------------------~~fLAvss~dG~v~iw~~~~~~~~-~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~ 206 (933)
T KOG1274|consen 150 ----------------------GNFLAVSSCDGKVQIWDLQDGILS-KTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP 206 (933)
T ss_pred ----------------------CCEEEEEecCceEEEEEcccchhh-hhcccCCccccccccceeeeeeecCCCCeEEee
Confidence 666999999999999998765421 1111 114567889999998888888
Q ss_pred ECCCcEEEEeCCCCeEEEEEec--ccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 379 SFDKSIKLWNGTTGKFVAVFRG--HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 379 ~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+.|+.|++|+..+.+....+.. +...+..+ +|+|+|+|||+++.||.|-||
T Consensus 207 ~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~---------------------------~wsPnG~YiAAs~~~g~I~vW 259 (933)
T KOG1274|consen 207 PVDNTVKVYSRKGWELQFKLRDKLSSSKFSDL---------------------------QWSPNGKYIAASTLDGQILVW 259 (933)
T ss_pred ccCCeEEEEccCCceeheeecccccccceEEE---------------------------EEcCCCcEEeeeccCCcEEEE
Confidence 8999999999999988887763 33346666 999999999999999999999
No 141
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.5e-24 Score=181.53 Aligned_cols=277 Identities=19% Similarity=0.304 Sum_probs=199.9
Q ss_pred EEEECCCCCeEEEEECC---CcEEEEeCCCCcceeEEecC----CCCEEEEEEcC-------CCCEEEEEeCCCeEEEEe
Q 012799 113 SVAFSPDGRQLASGSGD---TTVRLWDLNTQTPMFKCTGH----KNWVLCIAWSA-------DGKHLVSGSKAGELQCWD 178 (456)
Q Consensus 113 ~~~~s~~~~~l~~~~~d---~~v~vwd~~~~~~~~~~~~~----~~~v~~~~~~~-------~~~~l~s~~~dg~i~vwd 178 (456)
.+..-|+.++++++-.+ ..+-+|=.+....- .+-.| .....|++|.. .|+++|.|+.|..|.|||
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n-lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWD 208 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN-LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWD 208 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCcc-eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEec
Confidence 45667777777776432 23334433332211 11112 23446777753 378999999999999999
Q ss_pred CCCCCCc--------------------cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC
Q 012799 179 PQTGKPS--------------------GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG 238 (456)
Q Consensus 179 ~~~~~~~--------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 238 (456)
+.-...+ .....+|...|.++.|... ..+.|++||.|.+|++||+.++++..++..
T Consensus 209 LDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~----~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~ 284 (463)
T KOG0270|consen 209 LDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN----FRNVLASGSADKTVKLWDVDTGKPKSSITH 284 (463)
T ss_pred cccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc----cceeEEecCCCceEEEEEcCCCCcceehhh
Confidence 8632210 0113468888888888763 346899999999999999999999999999
Q ss_pred cCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHH
Q 012799 239 HTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316 (456)
Q Consensus 239 ~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (456)
|...|.++.|+|.. .|++|+.|+++.+.|+|........-...+.|..++|.|..
T Consensus 285 ~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~s----------------------- 341 (463)
T KOG0270|consen 285 HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHS----------------------- 341 (463)
T ss_pred cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCC-----------------------
Confidence 99999999999976 99999999999999999532222111244668889998873
Q ss_pred HHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCC-CCEEEEEECCCcEEEEeCCCCeE-
Q 012799 317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKF- 394 (456)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~~~dg~i~iwd~~~~~~- 394 (456)
...+++++.||+++-+|+|....++..+..|.++|.++++++. -.++++++.|+.|++|++..-..
T Consensus 342 ------------e~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 342 ------------ENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred ------------ceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 4568899999999999999999999999999999999999985 44689999999999999865333
Q ss_pred -EEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCC-eEEEeeCCCceEEC
Q 012799 395 -VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGSKDSTLKVT 456 (456)
Q Consensus 395 -~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~s~s~Dg~v~iW 456 (456)
+....-.-+...|. ++.|+-. +|+.||..+.++||
T Consensus 410 ~v~~~~~~~~rl~c~---------------------------~~~~~~a~~la~GG~k~~~~vw 446 (463)
T KOG0270|consen 410 SVKEHSFKLGRLHCF---------------------------ALDPDVAFTLAFGGEKAVLRVW 446 (463)
T ss_pred ccccccccccceeec---------------------------ccCCCcceEEEecCccceEEEe
Confidence 22111111122222 5566554 67788888889998
No 142
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=6.2e-24 Score=170.78 Aligned_cols=207 Identities=23% Similarity=0.373 Sum_probs=174.8
Q ss_pred cCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCC--------------ccccccCcccceEEEEecccccCCCCCE
Q 012799 148 GHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGKP--------------SGNPLSGHKKWITGISWEPVHLNAPCRR 212 (456)
Q Consensus 148 ~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 212 (456)
.|.+.|+++...+ .|+++++|+.||.|.+||+++... -.....+|+-.|.++.|-|. |...
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~----DtGm 116 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI----DTGM 116 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee----cCce
Confidence 4889999999988 789999999999999999986431 01124568889999999996 6678
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC----eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEE
Q 012799 213 FVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG----VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA 288 (456)
Q Consensus 213 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 288 (456)
|.+++.|.++++||.++.+....++ ..+.|.+-+++|-. .+++|..+-.|++.|+.+|..-.++.+|...|.++.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred eecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence 9999999999999999998887775 45678888888733 778888889999999999999999999999999999
Q ss_pred ecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC--------------Ccc
Q 012799 289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ--------------PKT 354 (456)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------~~~ 354 (456)
|+|.+.+ .|++|+.||.|++||++.... ..+
T Consensus 196 Wsp~~e~-----------------------------------vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~ 240 (397)
T KOG4283|consen 196 WSPSSEW-----------------------------------VLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK 240 (397)
T ss_pred eccCcee-----------------------------------EEEecCCCceEEEEEeecccceeEEeecccCccCcccc
Confidence 9998644 489999999999999876421 122
Q ss_pred ccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeE
Q 012799 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF 394 (456)
Q Consensus 355 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~ 394 (456)
.-..|.+.+..++|+.++.++++++.|..+++|+..+|+-
T Consensus 241 ~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 241 TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred ccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence 2457888999999999999999999999999999988764
No 143
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=3.2e-24 Score=189.59 Aligned_cols=253 Identities=21% Similarity=0.334 Sum_probs=188.2
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeE--EecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEE
Q 012799 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK--CTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCW 177 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vw 177 (456)
......|.+.|..+.|.|....|++++.|.++++||+.+.+.... +.+|.+.|.+++|.| +...+++|+.||.|.||
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 345568999999999999667899999999999999999887766 889999999999999 55688999999999999
Q ss_pred eCCCCCCcc--------------------------ccccCcccceEE---EEecccccCCCCCEEEEEeC-CCcEEEEEC
Q 012799 178 DPQTGKPSG--------------------------NPLSGHKKWITG---ISWEPVHLNAPCRRFVSASK-DGDARIWDV 227 (456)
Q Consensus 178 d~~~~~~~~--------------------------~~~~~~~~~v~~---~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~ 227 (456)
|++-..... .....+...|.+ +.+.. |...|++++. |+.|++||+
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-----De~tlaSaga~D~~iKVWDL 247 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-----DESTLASAGAADSTIKVWDL 247 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe-----ccceeeeccCCCcceEEEee
Confidence 986432100 001122333333 23323 7788999888 999999999
Q ss_pred CCCeEEEEe--------cCc---CccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCe--EEEEeecCCcceEEEEecCcc
Q 012799 228 SLRKCVICL--------SGH---TLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK--LIRELKGHGHWVNSLALSTEY 293 (456)
Q Consensus 228 ~~~~~~~~~--------~~~---~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~ 293 (456)
+........ ..| ...++++..+..| +|++.+.|+.|++|++.+-. ++..+.++...-.-+
T Consensus 248 Rk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~v------ 321 (720)
T KOG0321|consen 248 RKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYV------ 321 (720)
T ss_pred cccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeee------
Confidence 876544322 122 3457888888878 88888889999999998632 222232221110000
Q ss_pred eeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCC-
Q 012799 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG- 372 (456)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~- 372 (456)
.....+++.++++|+.|...++|.+.........+.+|.-.|++++|.|..
T Consensus 322 ----------------------------ks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~ 373 (720)
T KOG0321|consen 322 ----------------------------KSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSAT 373 (720)
T ss_pred ----------------------------eeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccC
Confidence 111223477899999999999999999888888999999999999999843
Q ss_pred CEEEEEECCCcEEEEeCCCC
Q 012799 373 QWVASASFDKSIKLWNGTTG 392 (456)
Q Consensus 373 ~~l~s~~~dg~i~iwd~~~~ 392 (456)
.-+++++.|.++++|++..+
T Consensus 374 t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 374 TPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CCceeeccCcceEEEeccCc
Confidence 33788899999999998654
No 144
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.4e-23 Score=182.73 Aligned_cols=250 Identities=22% Similarity=0.311 Sum_probs=208.6
Q ss_pred ccccccccCC-cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 012799 98 NRCSATIAGH-TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQC 176 (456)
Q Consensus 98 ~~~~~~l~~h-~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v 176 (456)
.-+...+.|| +..|.+++|++.+ .|++.+.+|.|.-||+.+++++..+....+.|.+++.+|.+..++.|+.||.+..
T Consensus 58 w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~ 136 (691)
T KOG2048|consen 58 WFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYD 136 (691)
T ss_pred ceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEE
Confidence 3355667666 5689999999555 5888889999999999999999999999999999999999999999999998888
Q ss_pred EeCCCCCCccc-cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe-------c-CcCccEEEEE
Q 012799 177 WDPQTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-------S-GHTLAVTCVK 247 (456)
Q Consensus 177 wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~-~~~~~v~~~~ 247 (456)
++...+..... .+....+.|.++.|+| ++..++.|+.||.|++||..++..+... . ....-|.++.
T Consensus 137 ~s~~p~~I~~~r~l~rq~sRvLslsw~~-----~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~ 211 (691)
T KOG2048|consen 137 FSIGPDKITYKRSLMRQKSRVLSLSWNP-----TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVL 211 (691)
T ss_pred EecCCceEEEEeecccccceEEEEEecC-----CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEE
Confidence 88777765432 3445568999999999 8889999999999999999988776622 1 1344578888
Q ss_pred eCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCC
Q 012799 248 WGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327 (456)
Q Consensus 248 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (456)
+..++.+++|..-|+|.+||...+..++.+..|...|.+++..++
T Consensus 212 ~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~----------------------------------- 256 (691)
T KOG2048|consen 212 FLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADN----------------------------------- 256 (691)
T ss_pred EeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCC-----------------------------------
Confidence 888889999999999999999999999999999999999999987
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCC---CccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCC
Q 012799 328 APERLVSGSDDFTMFLWEPAVSKQ---PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391 (456)
Q Consensus 328 ~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 391 (456)
.+++++++.|+.|..|....... .......|...|.+++..++ .|++|+.|..+.+-....
T Consensus 257 -~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 257 -EDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred -CCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 67799999999999998665543 22234567788999999876 899999999888776543
No 145
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.9e-24 Score=183.12 Aligned_cols=236 Identities=23% Similarity=0.398 Sum_probs=186.3
Q ss_pred CCeEEEEECCCcEEEEeCCCC---cce------------------eEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEE
Q 012799 120 GRQLASGSGDTTVRLWDLNTQ---TPM------------------FKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCW 177 (456)
Q Consensus 120 ~~~l~~~~~d~~v~vwd~~~~---~~~------------------~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vw 177 (456)
|+++|.|+.|..|.|||+.-. .+. ..-.+|+..|.+++|+.. .+.||+||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 679999999999999997521 111 112368899999999874 5689999999999999
Q ss_pred eCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--eEE
Q 012799 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIY 255 (456)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~ 255 (456)
|+.++++.. .+..|.+.|.++.|+|. ....|++|+.|++|.+.|.+........-...+.|-.++|.|.. .++
T Consensus 272 D~~~g~p~~-s~~~~~k~Vq~l~wh~~----~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~ 346 (463)
T KOG0270|consen 272 DVDTGKPKS-SITHHGKKVQTLEWHPY----EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFF 346 (463)
T ss_pred EcCCCCcce-ehhhcCCceeEEEecCC----CceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEE
Confidence 999999876 56789999999999995 55799999999999999998533322222246789999999977 888
Q ss_pred EEeCCCcEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799 256 TGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (456)
Q Consensus 256 ~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (456)
++..||+|+-+|+|.. +++.+++.|..+|.+++++... +..+++
T Consensus 347 ~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~-----------------------------------p~~l~t 391 (463)
T KOG0270|consen 347 VSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQT-----------------------------------PGLLST 391 (463)
T ss_pred EecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCC-----------------------------------Ccceee
Confidence 9999999999999985 8999999999999999998762 567999
Q ss_pred EeCCCcEEEEecCCCCCCcccccc-ccccEeEEEECCCCCE-EEEEECCCcEEEEeCCCCeEE
Q 012799 335 GSDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQW-VASASFDKSIKLWNGTTGKFV 395 (456)
Q Consensus 335 ~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~-l~s~~~dg~i~iwd~~~~~~~ 395 (456)
++.|+.+++|++.........-.. .-+...|.++.|+-.+ ++.|+..+.++|||+.+...+
T Consensus 392 ~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 392 ASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 999999999997655432211111 1123567778886554 788888889999999876543
No 146
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.9e-24 Score=179.26 Aligned_cols=315 Identities=17% Similarity=0.239 Sum_probs=231.5
Q ss_pred hhhhHhhcCcCcccEEEEEEeccceEEEeecccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC------C
Q 012799 67 LGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT------Q 140 (456)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~------~ 140 (456)
+..+|.+++++..+.+...|+|...- .+-|.+.+.+|.+.|+++.|+.++++||+|+.|..+++|+++. .
T Consensus 19 i~~FL~QR~i~~~~~~~k~F~~~~~~----R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~ 94 (609)
T KOG4227|consen 19 IESFLCQREIGSVKSVVKTFRPDFQH----RPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTP 94 (609)
T ss_pred eeeeeeecccCCChhhhhhhchhhhh----cchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCC
Confidence 45677788888888777778776543 3457788999999999999999999999999999999999863 2
Q ss_pred cceeEEe-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcc---cceEEEEecccccCCCCCEEEEE
Q 012799 141 TPMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK---KWITGISWEPVHLNAPCRRFVSA 216 (456)
Q Consensus 141 ~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~l~~~ 216 (456)
+++.... .|...|.|++|....+++++|+.+++|.+.|+++.+.+. ...|. +.|+.+..+| -.+.|++.
T Consensus 95 KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~--V~~~~~~~~~VY~m~~~P-----~DN~~~~~ 167 (609)
T KOG4227|consen 95 KPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIY--VANENNNRGDVYHMDQHP-----TDNTLIVV 167 (609)
T ss_pred CCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeee--eecccCcccceeecccCC-----CCceEEEE
Confidence 3443332 466899999999999999999999999999999988764 33343 4899999999 56899999
Q ss_pred eCCCcEEEEECCCCe-E--EEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeE-EEE------eecCCcce
Q 012799 217 SKDGDARIWDVSLRK-C--VICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKL-IRE------LKGHGHWV 284 (456)
Q Consensus 217 ~~dg~i~iwd~~~~~-~--~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~-~~~------~~~~~~~i 284 (456)
+.+|.|.+||.+... . .............+.|+|.. +|++.+..+-+.+||.+.... +.. ++.....-
T Consensus 168 t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~ 247 (609)
T KOG4227|consen 168 TRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEW 247 (609)
T ss_pred ecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhh
Confidence 999999999998654 2 22233445667888999977 888888889999999986432 111 11111112
Q ss_pred EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc-----
Q 012799 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH----- 359 (456)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----- 359 (456)
.++.|+|. +..+++--....-.+||+.....++.+....
T Consensus 248 M~~~~~~~------------------------------------G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~ 291 (609)
T KOG4227|consen 248 MGSLWSPS------------------------------------GNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYC 291 (609)
T ss_pred hheeeCCC------------------------------------CCeehhhhccCCCEEeeeecccceeEeccCCCCcce
Confidence 33445554 4445555444555566765544444433211
Q ss_pred -cccEeEEEECCCCCEEEEEECCCcEEEEeCCC-----C------------------eEEEEEecccccEEEEEeeeeee
Q 012799 360 -QQLVNHVYFSPDGQWVASASFDKSIKLWNGTT-----G------------------KFVAVFRGHVGPVYQIRFELIYC 415 (456)
Q Consensus 360 -~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~-----~------------------~~~~~~~~~~~~v~~i~~~~~~~ 415 (456)
...+.+++|.-|- -+++|+.+-.|++|.+.. | +.+.++++|...++.+
T Consensus 292 N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV------- 363 (609)
T KOG4227|consen 292 NIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV------- 363 (609)
T ss_pred eeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce-------
Confidence 2346778887554 499999999999998652 1 1245677888888888
Q ss_pred ecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 416 FRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.|+|...+|++.|-...++||
T Consensus 364 --------------------RF~~H~~~l~SSGVE~~~KlW 384 (609)
T KOG4227|consen 364 --------------------RFSQHNNLLVSSGVENSFKLW 384 (609)
T ss_pred --------------------eecCCcceEeccchhhheecc
Confidence 889999999999999999999
No 147
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=3.1e-24 Score=184.53 Aligned_cols=237 Identities=19% Similarity=0.337 Sum_probs=195.2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC---ccc-cccCcccceEEEEecccccCCCCCEEEEEeCCCcEE
Q 012799 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP---SGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223 (456)
Q Consensus 148 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~-~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~ 223 (456)
.|..-|.++..+...++++||+. |.|+|||+..... +.. ........|.++...| ||+.|++|+.-.++.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p-----dgrtLivGGeastls 490 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP-----DGRTLIVGGEASTLS 490 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecC-----CCceEEeccccceee
Confidence 48888899999999999999886 6899999974321 110 1122345688888888 999999999999999
Q ss_pred EEECCCCeEEEE--ecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccc
Q 012799 224 IWDVSLRKCVIC--LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF 300 (456)
Q Consensus 224 iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 300 (456)
|||+....+... +........+++.+||. ..++++.||.|.|||+.+...++.+++|...+.+|.++++
T Consensus 491 iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~d-------- 562 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKD-------- 562 (705)
T ss_pred eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCC--------
Confidence 999976654332 33333456778899998 8889999999999999999999999999999999999988
Q ss_pred cCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEEC
Q 012799 301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380 (456)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~ 380 (456)
+..|.+|+-|.+++.||++.+.++... ...+.|.++.++|++.+|+.|..
T Consensus 563 ----------------------------GtklWTGGlDntvRcWDlregrqlqqh--dF~SQIfSLg~cP~~dWlavGMe 612 (705)
T KOG0639|consen 563 ----------------------------GTKLWTGGLDNTVRCWDLREGRQLQQH--DFSSQIFSLGYCPTGDWLAVGME 612 (705)
T ss_pred ----------------------------CceeecCCCccceeehhhhhhhhhhhh--hhhhhheecccCCCccceeeecc
Confidence 667999999999999999887765442 23467999999999999999999
Q ss_pred CCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 381 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
++.+.+.... +.....+..|..-|.++ .|.+.|+++++.|.|+.+..|
T Consensus 613 ns~vevlh~s-kp~kyqlhlheScVLSl---------------------------KFa~cGkwfvStGkDnlLnaw 660 (705)
T KOG0639|consen 613 NSNVEVLHTS-KPEKYQLHLHESCVLSL---------------------------KFAYCGKWFVSTGKDNLLNAW 660 (705)
T ss_pred cCcEEEEecC-CccceeecccccEEEEE---------------------------EecccCceeeecCchhhhhhc
Confidence 9999999864 44455667799999999 889999999999999998887
No 148
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=8.1e-25 Score=206.06 Aligned_cols=276 Identities=21% Similarity=0.421 Sum_probs=217.5
Q ss_pred EEEECCCCC-eEEEEE----------CCCcEEEEeCCCCc------ceeEEecCCCCEEEEEEcCCCCE----EEEEeCC
Q 012799 113 SVAFSPDGR-QLASGS----------GDTTVRLWDLNTQT------PMFKCTGHKNWVLCIAWSADGKH----LVSGSKA 171 (456)
Q Consensus 113 ~~~~s~~~~-~l~~~~----------~d~~v~vwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~----l~s~~~d 171 (456)
.++|+|++. ++|+|. .+.++-||.+.... ....+. -....+.++|.+.+.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 468888876 555542 34566666554322 222222 3556889999987665 8889999
Q ss_pred CeEEEEeCCCC---C--CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec--CcCccEE
Q 012799 172 GELQCWDPQTG---K--PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--GHTLAVT 244 (456)
Q Consensus 172 g~i~vwd~~~~---~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~ 244 (456)
|.|.+||...- . .+......|.+.|..+.|++. .++.+++|+.||.|.|||++..+.-.... .....|.
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~----q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~ 165 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF----QGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIK 165 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeecccc----CCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccce
Confidence 99999998752 1 122356789999999999994 45699999999999999998755444442 2457899
Q ss_pred EEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCc--ceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhh
Q 012799 245 CVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGH--WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320 (456)
Q Consensus 245 ~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (456)
+++|+..- .|++++.+|.+.|||++..+.+-.+..+.. .+..+.|+|+.
T Consensus 166 ~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~--------------------------- 218 (1049)
T KOG0307|consen 166 CLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDH--------------------------- 218 (1049)
T ss_pred EeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCC---------------------------
Confidence 99999755 888999999999999999888877765544 46789999984
Q ss_pred hhhccCCCCCEEEEEeCCC---cEEEEecCCCCCCccccccccccEeEEEECCCC-CEEEEEECCCcEEEEeCCCCeEEE
Q 012799 321 YNKIKGNAPERLVSGSDDF---TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVA 396 (456)
Q Consensus 321 ~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~ 396 (456)
...+++++.|. .|.+||+|....+.+.+.+|...|.++.|++.+ ++|++++.|+.|.+|+.++|+.+.
T Consensus 219 --------aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 219 --------ATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred --------ceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence 33466666553 699999999999999999999999999999955 889999999999999999999999
Q ss_pred EEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCC-eEEEeeCCCceEE
Q 012799 397 VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGSKDSTLKV 455 (456)
Q Consensus 397 ~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~s~s~Dg~v~i 455 (456)
.+....+.+..+ .|+|... .++.++-||.|.|
T Consensus 291 ~~p~~~nW~fdv---------------------------~w~pr~P~~~A~asfdgkI~I 323 (1049)
T KOG0307|consen 291 ELPAQGNWCFDV---------------------------QWCPRNPSVMAAASFDGKISI 323 (1049)
T ss_pred ecCCCCcceeee---------------------------eecCCCcchhhhheeccceee
Confidence 999888888888 8898776 7888888999876
No 149
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.92 E-value=3.1e-24 Score=189.64 Aligned_cols=165 Identities=22% Similarity=0.373 Sum_probs=129.2
Q ss_pred ccccccCCcccEEEEEECC-CCCeEEEEECCCcEEEEeCCCCcc------eeEEecCCCCEEEEEEcCCCCEEEEEeCCC
Q 012799 100 CSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTP------MFKCTGHKNWVLCIAWSADGKHLVSGSKAG 172 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 172 (456)
-+..|.+|.+.|+.+.|+| +..+||+|+.|..|+||.+..+.. ...+.+..-.|.|+.|+|...-|+..+..|
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g 150 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG 150 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence 4556789999999999999 456899999999999999974421 122334456789999999766666667789
Q ss_pred eEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC-CeEEEEecCcCcc-EEEEEeCC
Q 012799 173 ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICLSGHTLA-VTCVKWGG 250 (456)
Q Consensus 173 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~-v~~~~~~~ 250 (456)
++.+||+.+++... .+.+|...|.+..|+. ||..+++++.|..|+|||.+. ++.++...+|.+. =..+.|..
T Consensus 151 ~v~i~D~stqk~~~-el~~h~d~vQSa~Wse-----DG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~G 224 (1012)
T KOG1445|consen 151 SVYITDISTQKTAV-ELSGHTDKVQSADWSE-----DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAG 224 (1012)
T ss_pred eEEEEEcccCceee-cccCCchhhhcccccc-----CCceEeeecCCcceEEeCCccCCCccccccccccchhheeeecc
Confidence 99999999998776 6889999999999999 999999999999999999874 5677777777643 33466665
Q ss_pred CC-eEEEEeCC----CcEEEEECCC
Q 012799 251 DG-VIYTGSQD----CTIKVWETTQ 270 (456)
Q Consensus 251 ~~-~l~~~~~d----g~i~iwd~~~ 270 (456)
+- .|++.+.+ ..|++||.+.
T Consensus 225 n~~rlisTGF~~~R~reV~~~Dtr~ 249 (1012)
T KOG1445|consen 225 NWERLISTGFTTKRIREVRAYDTRK 249 (1012)
T ss_pred chhhhhhcccchhhheeeeeeeccc
Confidence 53 55554443 4688898764
No 150
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.92 E-value=1.8e-24 Score=171.08 Aligned_cols=286 Identities=21% Similarity=0.270 Sum_probs=205.4
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (456)
Q Consensus 102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 180 (456)
..|++|.+.|+++.|..+++ |.+|..-|.|++|++.+......+. .+...|+.+.--|+ ..+.+-++|+.+.+|++.
T Consensus 8 fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia 85 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIA 85 (323)
T ss_pred eEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEcc
Confidence 34668999999999998876 8899999999999999988887777 67888999998887 578899999999999998
Q ss_pred CCCCccccccCcccceEEEEecccccCCCCC----EEEEEeCCC-cEEEEECCCCeEEEEec----CcCccEEEEEeCCC
Q 012799 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCR----RFVSASKDG-DARIWDVSLRKCVICLS----GHTLAVTCVKWGGD 251 (456)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~l~~~~~dg-~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~ 251 (456)
.+.. ..-|.-.+.++-|.+..+...++ .++.-+... .+++-|......+.... +..+.+.|..+..+
T Consensus 86 ~s~~----i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 86 YSAF----ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA 161 (323)
T ss_pred Ccce----EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence 7543 33345556666666643322221 112111110 12223332222222221 23456777775542
Q ss_pred -C---eEEEEeCCCcEEEEECCCCeEEE----------EeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHH
Q 012799 252 -G---VIYTGSQDCTIKVWETTQGKLIR----------ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA 317 (456)
Q Consensus 252 -~---~l~~~~~dg~i~iwd~~~~~~~~----------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (456)
+ .+++|..+|.+.+||+.++..+- ....|..++.++.+.+.
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~------------------------- 216 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS------------------------- 216 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh-------------------------
Confidence 2 67889999999999999984333 33456677777777653
Q ss_pred HhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC--cc-ccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeE
Q 012799 318 LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP--KT-RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF 394 (456)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~-~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~ 394 (456)
-+.=++|+.+..+..|.+...... .. ...-....|..+..-||++.+||++.||+||||+.+++++
T Consensus 217 -----------~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p 285 (323)
T KOG0322|consen 217 -----------CDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP 285 (323)
T ss_pred -----------hcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCc
Confidence 122355666777888876654221 11 1112233478899999999999999999999999999999
Q ss_pred EEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 395 VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 395 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+..++-|.+.|+++ +|+||...+|++|.|++|.+|
T Consensus 286 LAVLkyHsagvn~v---------------------------Afspd~~lmAaaskD~rISLW 320 (323)
T KOG0322|consen 286 LAVLKYHSAGVNAV---------------------------AFSPDCELMAAASKDARISLW 320 (323)
T ss_pred hhhhhhhhcceeEE---------------------------EeCCCCchhhhccCCceEEee
Confidence 99999999999999 899999999999999999999
No 151
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.92 E-value=4.9e-23 Score=168.08 Aligned_cols=310 Identities=20% Similarity=0.303 Sum_probs=210.1
Q ss_pred ccccCCcccEEEEEECC-----CCCeEEEEECCCcEEEEeCCCCcceeEEe-----cCCCCEEEEEEcCC----CCEEEE
Q 012799 102 ATIAGHTEAVLSVAFSP-----DGRQLASGSGDTTVRLWDLNTQTPMFKCT-----GHKNWVLCIAWSAD----GKHLVS 167 (456)
Q Consensus 102 ~~l~~h~~~V~~~~~s~-----~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~----~~~l~s 167 (456)
+...+|+.+|..++|++ .-..+|+.+.+ .+.+|......-+..++ .|......++|+-+ ..++|.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34467999999999985 23456666554 78999876544232222 46777888899863 458899
Q ss_pred EeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe---cCcCccEE
Q 012799 168 GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SGHTLAVT 244 (456)
Q Consensus 168 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~ 244 (456)
++.-|.|+|.|+.+++... .+.+|...|..+.+.|. +.+++++++.|..|++|++++..++..+ .+|...|.
T Consensus 111 ~G~~GvIrVid~~~~~~~~-~~~ghG~sINeik~~p~----~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVL 185 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSK-NYRGHGGSINEIKFHPD----RPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVL 185 (385)
T ss_pred ecceeEEEEEecchhhhcc-ceeccCccchhhhcCCC----CCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEE
Confidence 9999999999999988776 78899999999999995 4479999999999999999999999887 57999999
Q ss_pred EEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCC--hHHHHHHHHhhh
Q 012799 245 CVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSS--PEEMKKAALERY 321 (456)
Q Consensus 245 ~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 321 (456)
++.|+++| ++++++.|.++++|++...+....+. .++.++|+....-.. .....+.. .....+...+..
T Consensus 186 SvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE------~s~~~~~~~t~~pfp--t~~~~fp~fst~diHrnyVDCv 257 (385)
T KOG1034|consen 186 SVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLE------LSITYSPNKTTRPFP--TPKTHFPDFSTTDIHRNYVDCV 257 (385)
T ss_pred EEEEcCCCCeeeccCCcceEEEEecChhHHhhhhh------hhcccCCCCccCcCC--ccccccccccccccccchHHHH
Confidence 99999999 99999999999999998543222221 112222221110000 00000000 000000000000
Q ss_pred hhccCCCCCEEEEEeCCCcEEEEecCCCCCC-------------ccccccccccEeEE--EECCCCCEEEEEECCCcEEE
Q 012799 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQP-------------KTRMTGHQQLVNHV--YFSPDGQWVASASFDKSIKL 386 (456)
Q Consensus 322 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-------------~~~~~~~~~~v~~~--~~sp~~~~l~s~~~dg~i~i 386 (456)
.. -++++++-+.++.|..|..-.-... ...+.-....|.-+ +|.|-+++||.|...|.|.+
T Consensus 258 rw----~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v 333 (385)
T KOG1034|consen 258 RW----FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV 333 (385)
T ss_pred HH----HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence 00 1467899899999999986211111 11111122334444 56677889999999999999
Q ss_pred EeCCCCeEE--EEEe--cccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 387 WNGTTGKFV--AVFR--GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 387 wd~~~~~~~--~~~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
||++..+.. .++. .....|... +||.||..|+...+|++|.=|
T Consensus 334 wdL~~~ep~~~ttl~~s~~~~tVRQ~---------------------------sfS~dgs~lv~vcdd~~Vwrw 380 (385)
T KOG1034|consen 334 WDLDNNEPPKCTTLTHSKSGSTVRQT---------------------------SFSRDGSILVLVCDDGTVWRW 380 (385)
T ss_pred EECCCCCCccCceEEeccccceeeee---------------------------eecccCcEEEEEeCCCcEEEE
Confidence 999886652 1222 112355555 899999999999999998655
No 152
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=1.2e-22 Score=165.40 Aligned_cols=257 Identities=20% Similarity=0.341 Sum_probs=199.8
Q ss_pred EEEEEECCCCCeEEEEECCCcEEEEeCCCC-------c-----ceeEEe-cCCCCEEEEEEc-------CCCCEEEEEeC
Q 012799 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQ-------T-----PMFKCT-GHKNWVLCIAWS-------ADGKHLVSGSK 170 (456)
Q Consensus 111 V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~-------~-----~~~~~~-~~~~~v~~~~~~-------~~~~~l~s~~~ 170 (456)
...+.|+|||..|++-+.|..+++|++... . ...++. .....|..-+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 456899999999999999999999997431 0 011111 134457777775 57789999999
Q ss_pred CCeEEEEeCCCCCCcccc-ccCccc---ceEEEEecccccCCCCCEEEEEeCCCcEEEEEC-CCCeEEE--E-----ecC
Q 012799 171 AGELQCWDPQTGKPSGNP-LSGHKK---WITGISWEPVHLNAPCRRFVSASKDGDARIWDV-SLRKCVI--C-----LSG 238 (456)
Q Consensus 171 dg~i~vwd~~~~~~~~~~-~~~~~~---~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~--~-----~~~ 238 (456)
+.-|++||.-+|+..... ...|.. ...+++|+| ||..|++|.. ..|+++|+ +.+.... . ..+
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-----DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~g 205 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-----DGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFG 205 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecC-----CCCeEeeccc-ceEEEeeccCCCCCCcchhhhhccccc
Confidence 999999999999865421 122333 345788998 9999887655 78999999 4443211 1 123
Q ss_pred cCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHH
Q 012799 239 HTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316 (456)
Q Consensus 239 ~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (456)
..+-+.|++++|-. .+++++...++-||.-..+.++..+.+|.+.|+.+.|.++
T Consensus 206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ed------------------------ 261 (406)
T KOG2919|consen 206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCED------------------------ 261 (406)
T ss_pred ccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccC------------------------
Confidence 46779999999965 8899999999999998889999999999999999999998
Q ss_pred HHhhhhhccCCCCCEEEEEeC-CCcEEEEecCCCCCCccccccccc-cEeEE--EECCCCCEEEEEECCCcEEEEeCCC-
Q 012799 317 ALERYNKIKGNAPERLVSGSD-DFTMFLWEPAVSKQPKTRMTGHQQ-LVNHV--YFSPDGQWVASASFDKSIKLWNGTT- 391 (456)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~--~~sp~~~~l~s~~~dg~i~iwd~~~- 391 (456)
++.|++|+. |-.|..||++....++..+..|.. .-..| ...|++++|++|+.||.|++||+++
T Consensus 262 ------------Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 262 ------------GNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL 329 (406)
T ss_pred ------------cCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC
Confidence 556777765 778999999999988888887765 22233 4568899999999999999999998
Q ss_pred CeEEEEEecccccEEEEE
Q 012799 392 GKFVAVFRGHVGPVYQIR 409 (456)
Q Consensus 392 ~~~~~~~~~~~~~v~~i~ 409 (456)
|..+..+..|...++.+.
T Consensus 330 gn~~sv~~~~sd~vNgvs 347 (406)
T KOG2919|consen 330 GNEVSVTGNYSDTVNGVS 347 (406)
T ss_pred CCccccccccccccccee
Confidence 787888888999999993
No 153
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.91 E-value=1.4e-22 Score=170.09 Aligned_cols=293 Identities=26% Similarity=0.363 Sum_probs=207.9
Q ss_pred cccEEEEEECCCCC-eEEEEECCCcEEEEeCCCCcc---------eeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 012799 108 TEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTP---------MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (456)
Q Consensus 108 ~~~V~~~~~s~~~~-~l~~~~~d~~v~vwd~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 177 (456)
..+|..+.|.++.. .+|||+.|..|++|.+..+.. +..+..|...|+++.|+|+|..||+|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 56899999999876 999999999999998865322 24567899999999999999999999999999999
Q ss_pred eCC--------C-----C--CCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCcc
Q 012799 178 DPQ--------T-----G--KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA 242 (456)
Q Consensus 178 d~~--------~-----~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 242 (456)
... + . -.+.+.+.+|...|..++|.| ++.++++++.|..+++||+..++....+..|...
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-----d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y 167 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-----DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY 167 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-----CCceeeeeeccceEEEEEeccceeEeeccccccc
Confidence 876 2 1 112345678999999999999 9999999999999999999999999999999999
Q ss_pred EEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEee--------cCCcceEEEEecCcceeeeccccCCCCccCChHHH
Q 012799 243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK--------GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM 313 (456)
Q Consensus 243 v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (456)
+..++|.|-+ ++++-+.|...+.+++...+.++... .+...-....+..+..
T Consensus 168 vqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeT------------------- 228 (434)
T KOG1009|consen 168 VQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDET------------------- 228 (434)
T ss_pred cceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCc-------------------
Confidence 9999999988 88888888877777776544333221 0111111111111110
Q ss_pred HHHHHhhhhhccCCCCCEEEEEeC---------CCcEEEEecCCCCCCccccccccccEeEEEECC--------------
Q 012799 314 KKAALERYNKIKGNAPERLVSGSD---------DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-------------- 370 (456)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp-------------- 370 (456)
...+.+ ...+.+++..+++... -+..++|+-..-..+...+..-..+...+.|+|
T Consensus 229 -lksFFr-RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~ 306 (434)
T KOG1009|consen 229 -LKSFFR-RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFL 306 (434)
T ss_pred -hhhhhh-hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccc
Confidence 000111 1112244555554322 234466664334445555555555555555554
Q ss_pred ----CCCEEEEEECCCcEEEEeCCCCeEEEEEe-cccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEE
Q 012799 371 ----DGQWVASASFDKSIKLWNGTTGKFVAVFR-GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL 445 (456)
Q Consensus 371 ----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 445 (456)
-+-.+|.++ ...|.+||.++..++.... -|-..++++ +|++||..|+
T Consensus 307 ~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDi---------------------------aws~dg~~l~ 358 (434)
T KOG1009|consen 307 FVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDI---------------------------AWSDDGSVLL 358 (434)
T ss_pred cccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecce---------------------------eecCCCcEEE
Confidence 122345554 4579999999888776554 577888888 9999999999
Q ss_pred EeeCCCceE
Q 012799 446 SGSKDSTLK 454 (456)
Q Consensus 446 s~s~Dg~v~ 454 (456)
..|.||.+.
T Consensus 359 vSS~DGyCS 367 (434)
T KOG1009|consen 359 VSSTDGFCS 367 (434)
T ss_pred EeccCCceE
Confidence 999999764
No 154
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=1.3e-22 Score=180.60 Aligned_cols=271 Identities=19% Similarity=0.333 Sum_probs=215.0
Q ss_pred cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccc
Q 012799 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL 189 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 189 (456)
.|..++|-|||..|+.+..+ .+.+||.+.|..+.++++|.+.|+|++|+.||+.+++|+.|..|.+|+.+-... ..
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~---Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI---LK 89 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce---ee
Confidence 89999999999988887544 799999999999999999999999999999999999999999999998654332 35
Q ss_pred cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEEC
Q 012799 190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWET 268 (456)
Q Consensus 190 ~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~ 268 (456)
..|...|.++.|+| -...+++++- ...-+|......... ......+.+++|..|| +++.|-.+|+|.+-+-
T Consensus 90 YSH~D~IQCMsFNP-----~~h~LasCsL-sdFglWS~~qK~V~K--~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk 161 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNP-----ITHQLASCSL-SDFGLWSPEQKSVSK--HKSSSRIICCSWTNDGQYLALGMFNGTISIRNK 161 (1081)
T ss_pred eccCCeeeEeecCc-----hHHHhhhcch-hhccccChhhhhHHh--hhhheeEEEeeecCCCcEEEEeccCceEEeecC
Confidence 67999999999999 4467887776 346678765433221 1235678899999999 9999999999998864
Q ss_pred CCCeEEEEee---cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEe
Q 012799 269 TQGKLIRELK---GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE 345 (456)
Q Consensus 269 ~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 345 (456)
. ++..-.+. +.+++|.+++|+|.... ...+.+++.....++.+|.
T Consensus 162 ~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~-------------------------------G~~di~aV~DW~qTLSFy~ 209 (1081)
T KOG1538|consen 162 N-GEEKVKIERPGGSNSPIWSICWNPSSGE-------------------------------GRNDILAVADWGQTLSFYQ 209 (1081)
T ss_pred C-CCcceEEeCCCCCCCCceEEEecCCCCC-------------------------------CccceEEEEeccceeEEEE
Confidence 3 44333333 47789999999997321 1245688888888898888
Q ss_pred cCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceee
Q 012799 346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCV 425 (456)
Q Consensus 346 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~ 425 (456)
+... .+.+-..-.-...|+.+.|+|.++..|+.|+.+++|- +.|-.+.++......|+.+
T Consensus 210 LsG~--~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV----------------- 269 (1081)
T KOG1538|consen 210 LSGK--QIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTV----------------- 269 (1081)
T ss_pred ecce--eecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEE-----------------
Confidence 6432 2222222233467899999999999999999999997 6788888888788899999
Q ss_pred ecccccccceeEecCCCeEEEeeCCCceE
Q 012799 426 VDMSCCMSLYSWSADSRLLLSGSKDSTLK 454 (456)
Q Consensus 426 ~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~ 454 (456)
+..|++++++.|..||+|.
T Consensus 270 ----------~~~PNsQ~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 270 ----------QAKPNSQYVVVGCQDGTIA 288 (1081)
T ss_pred ----------EEccCCceEEEEEccCeee
Confidence 8899999999999999974
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.1e-22 Score=174.81 Aligned_cols=260 Identities=16% Similarity=0.208 Sum_probs=204.2
Q ss_pred EEEEEECCCCCe-EEEEECCCcEEEEeCCCC--cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc
Q 012799 111 VLSVAFSPDGRQ-LASGSGDTTVRLWDLNTQ--TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187 (456)
Q Consensus 111 V~~~~~s~~~~~-l~~~~~d~~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 187 (456)
+.++.|+....+ +|+.+.|..|++|.-... +....-......-.|++......++++|+..+.|+|||++ .+.+.+
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~-~kl~hr 115 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLR-AKLIHR 115 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhH-HHHHhh
Confidence 899999987642 334457889999975433 1111111122244556655566899999999999999999 445556
Q ss_pred cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCc-CccEEEEEeCCCC--eEEEEeCCCcEE
Q 012799 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH-TLAVTCVKWGGDG--VIYTGSQDCTIK 264 (456)
Q Consensus 188 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~--~l~~~~~dg~i~ 264 (456)
.+.+|...|+++.|.. ...+|++++..|.|.|..+.++.....+... ...|.-+.+++.. .|.+++.+|.|.
T Consensus 116 ~lkdh~stvt~v~YN~-----~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vt 190 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNN-----TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVT 190 (673)
T ss_pred hccCCcceeEEEEecC-----CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEE
Confidence 8999999999999987 7789999999999999999988877777544 4556789999876 788899999999
Q ss_pred EEECCCCeEEEEe-ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEE
Q 012799 265 VWETTQGKLIREL-KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL 343 (456)
Q Consensus 265 iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 343 (456)
+||+....++..+ ..|..+...++|+|.. ...|++.+.|..|.+
T Consensus 191 lwDv~g~sp~~~~~~~HsAP~~gicfspsn-----------------------------------e~l~vsVG~Dkki~~ 235 (673)
T KOG4378|consen 191 LWDVQGMSPIFHASEAHSAPCRGICFSPSN-----------------------------------EALLVSVGYDKKINI 235 (673)
T ss_pred EEeccCCCcccchhhhccCCcCcceecCCc-----------------------------------cceEEEecccceEEE
Confidence 9999887776655 5688999999999974 446899999999999
Q ss_pred EecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCC-CeEEEEEecccccEEEEEeeee
Q 012799 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT-GKFVAVFRGHVGPVYQIRFELI 413 (456)
Q Consensus 344 wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~ 413 (456)
||.+......... -..+.+.++|+++|.+|+.|+..|.|..||++. ..++.++..|...|++++|...
T Consensus 236 yD~~s~~s~~~l~--y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 236 YDIRSQASTDRLT--YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred eecccccccceee--ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence 9977544333222 345689999999999999999999999999987 5678899999999999977543
No 156
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=7.4e-23 Score=169.98 Aligned_cols=203 Identities=21% Similarity=0.351 Sum_probs=168.7
Q ss_pred ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC----------------CCeEEEEecCcCccEEEEEeCC--
Q 012799 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS----------------LRKCVICLSGHTLAVTCVKWGG-- 250 (456)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~----------------~~~~~~~~~~~~~~v~~~~~~~-- 250 (456)
..+|.+.+..+.-.+.. +..+.++-+..|.|+|||+. ..+++.++.+|...=..++|+|
T Consensus 147 ~i~h~g~~NRvr~~~~~---~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~ 223 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLG---NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK 223 (440)
T ss_pred ccccccccceeeecccC---CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc
Confidence 44566777777666633 44566777889999999974 2356788899999999999999
Q ss_pred CCeEEEEeCCCcEEEEECCCCeEE---EEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCC
Q 012799 251 DGVIYTGSQDCTIKVWETTQGKLI---RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327 (456)
Q Consensus 251 ~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (456)
.|.|++|..-+.|++|...++.-. ..+.+|...|..++|+|..
T Consensus 224 ~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE---------------------------------- 269 (440)
T KOG0302|consen 224 TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTE---------------------------------- 269 (440)
T ss_pred ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCcc----------------------------------
Confidence 448999999999999999887543 3456799999999999973
Q ss_pred CCCEEEEEeCCCcEEEEecCCCC-CCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCC---CeEEEEEecccc
Q 012799 328 APERLVSGSDDFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT---GKFVAVFRGHVG 403 (456)
Q Consensus 328 ~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~ 403 (456)
...|++|+.||+|+|||++... ......+.|.+.|+.+.|+.+-.+||+|+.||+++|||++. ++++..|+.|..
T Consensus 270 -~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~ 348 (440)
T KOG0302|consen 270 -DGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA 348 (440)
T ss_pred -CceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC
Confidence 5569999999999999998873 33344588999999999999888999999999999999986 678999999999
Q ss_pred cEEEEEeeeeeeecCCCCceeeecccccccceeEecCC-CeEEEeeCCCceEEC
Q 012799 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLKVT 456 (456)
Q Consensus 404 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~s~s~Dg~v~iW 456 (456)
+|+++ .|+|.. ..|+++|.|..|.||
T Consensus 349 pItsi---------------------------eW~p~e~s~iaasg~D~QitiW 375 (440)
T KOG0302|consen 349 PITSI---------------------------EWHPHEDSVIAASGEDNQITIW 375 (440)
T ss_pred CeeEE---------------------------EeccccCceEEeccCCCcEEEE
Confidence 99999 899854 588889999999999
No 157
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=5.5e-23 Score=176.68 Aligned_cols=222 Identities=17% Similarity=0.245 Sum_probs=188.9
Q ss_pred cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccc
Q 012799 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL 189 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 189 (456)
.-.|++......++++|+..+.|+|||++.....+.+.+|...|+++.++....+||+++..|.|.|..+.++.......
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~ 160 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT 160 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee
Confidence 33455555555899999999999999999877888899999999999999999999999999999999999887665333
Q ss_pred cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCcCccEEEEEeCCCC--eEEEEeCCCcEEEE
Q 012799 190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-SGHTLAVTCVKWGGDG--VIYTGSQDCTIKVW 266 (456)
Q Consensus 190 ~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iw 266 (456)
.+....|.-+.|+|. ...+|.+++.+|.|.+||+....++..+ +.|..+...++|+|.+ .|++.+.|..|.+|
T Consensus 161 ~~sgqsvRll~ys~s----kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~y 236 (673)
T KOG4378|consen 161 IDSGQSVRLLRYSPS----KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIY 236 (673)
T ss_pred cCCCCeEEEeecccc----cceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEe
Confidence 333455678899884 3346778999999999999988877665 6799999999999977 88999999999999
Q ss_pred ECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEec
Q 012799 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP 346 (456)
Q Consensus 267 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 346 (456)
|.+..+....+. ...+...++|.++ |.+|++|...|.|..||+
T Consensus 237 D~~s~~s~~~l~-y~~Plstvaf~~~------------------------------------G~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 237 DIRSQASTDRLT-YSHPLSTVAFSEC------------------------------------GTYLCAGNSKGELIAYDM 279 (673)
T ss_pred ecccccccceee-ecCCcceeeecCC------------------------------------ceEEEeecCCceEEEEec
Confidence 999877666665 4567889999988 566999999999999999
Q ss_pred CCCCCCccccccccccEeEEEECCCC
Q 012799 347 AVSKQPKTRMTGHQQLVNHVYFSPDG 372 (456)
Q Consensus 347 ~~~~~~~~~~~~~~~~v~~~~~sp~~ 372 (456)
+..+.++.....|...|++++|-|..
T Consensus 280 R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 280 RSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ccCCCCceEeeecccceeEEEeeecc
Confidence 99999999999999999999998764
No 158
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=2.4e-22 Score=171.10 Aligned_cols=217 Identities=20% Similarity=0.314 Sum_probs=171.4
Q ss_pred EeCCCCcceeEEecCCCCEEEEEEcCCC--CEEEEEeCCCeEEEEeCCCCCC---ccccccCcccceEEEEecccccCCC
Q 012799 135 WDLNTQTPMFKCTGHKNWVLCIAWSADG--KHLVSGSKAGELQCWDPQTGKP---SGNPLSGHKKWITGISWEPVHLNAP 209 (456)
Q Consensus 135 wd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~ 209 (456)
.|+..-.......-+.++|++++|+|.. +.+|+|..-|.|-+||+.+.+. -......|..+|.++.|+|. +
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~----n 246 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPA----N 246 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCC----C
Confidence 3344444455566789999999999954 5888999999999999963332 22246789999999999996 4
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEE--EEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeE-EEEeecCCcceE
Q 012799 210 CRRFVSASKDGDARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKL-IRELKGHGHWVN 285 (456)
Q Consensus 210 ~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~ 285 (456)
...+++.+.||+|++-|++..... .........+..+.++.+. .++.+..=|...+||++++.. ...+..|...|+
T Consensus 247 ~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 247 TSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred hhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 568999999999999999876433 2333345567788888766 777777777999999998765 666677888999
Q ss_pred EEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC---Ccccccccccc
Q 012799 286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ---PKTRMTGHQQL 362 (456)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~ 362 (456)
+++++|.. ..++++++.|++.+|||++.-.. +......|...
T Consensus 327 sv~~NP~~-----------------------------------p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrrs 371 (498)
T KOG4328|consen 327 SVALNPVC-----------------------------------PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRS 371 (498)
T ss_pred eeecCCCC-----------------------------------chheeecccCcceeeeehhhhcCCCCcceecccccce
Confidence 99999974 55799999999999999876432 23445689999
Q ss_pred EeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799 363 VNHVYFSPDGQWVASASFDKSIKLWNGT 390 (456)
Q Consensus 363 v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 390 (456)
|.+..|||.+-.|++.+.|..|+|||..
T Consensus 372 V~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 372 VNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred eeeeEEcCCCCceEeeccCCceEEeecc
Confidence 9999999987779999999999999983
No 159
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.90 E-value=4.3e-20 Score=173.78 Aligned_cols=263 Identities=37% Similarity=0.651 Sum_probs=215.4
Q ss_pred cccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc-ceeEEecCCC-CEEEEEE-cCCCC-EEEEEeC-CCeEEEE
Q 012799 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-PMFKCTGHKN-WVLCIAW-SADGK-HLVSGSK-AGELQCW 177 (456)
Q Consensus 103 ~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~-~~~~~~~~~~-~v~~~~~-~~~~~-~l~s~~~-dg~i~vw 177 (456)
.+.+|...|.++.+.+.+..++.++.|+.+.+|+...+. ....+..+.. .+..+.+ ++++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 467899999999999999999999999999999998876 6666666443 7777777 78887 5555444 9999999
Q ss_pred eCCC-CCCccccccCcccceEEEEecccccCCCCCEEEEEeC-CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eE
Q 012799 178 DPQT-GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI 254 (456)
Q Consensus 178 d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l 254 (456)
+... .... .....|...|..++|+| ++..+++++. |+.+++|++..+..+..+.+|...+.+++|+|++ .+
T Consensus 140 ~~~~~~~~~-~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 213 (466)
T COG2319 140 DLSTPGKLI-RTLEGHSESVTSLAFSP-----DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLL 213 (466)
T ss_pred EecCCCeEE-EEEecCcccEEEEEECC-----CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceE
Confidence 9987 3333 36788999999999999 7778888885 9999999999988899998999999999999988 35
Q ss_pred EEE-eCCCcEEEEECCCCeEEE-EeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE
Q 012799 255 YTG-SQDCTIKVWETTQGKLIR-ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (456)
Q Consensus 255 ~~~-~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 332 (456)
+++ +.|+.+++||...+..+. .+..|.... ...++++ +..+
T Consensus 214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~------------------------------------~~~~ 256 (466)
T COG2319 214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPD------------------------------------GSLL 256 (466)
T ss_pred EEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCC------------------------------------CCEE
Confidence 554 899999999998887777 577676664 3366666 3458
Q ss_pred EEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEe--cccccEEEE
Q 012799 333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR--GHVGPVYQI 408 (456)
Q Consensus 333 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~i 408 (456)
++++.|+.+++|+............+|...+.++.|+|++..+++++.|+.+++||..+........ .|...+..+
T Consensus 257 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (466)
T COG2319 257 ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL 334 (466)
T ss_pred EEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEE
Confidence 8999999999999876655233336788999999999988888889999999999999888777665 777778777
No 160
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.4e-21 Score=158.97 Aligned_cols=205 Identities=20% Similarity=0.326 Sum_probs=155.7
Q ss_pred eEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc---cccCcccceEEEEecccccCCCCCEEEE-EeCC
Q 012799 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN---PLSGHKKWITGISWEPVHLNAPCRRFVS-ASKD 219 (456)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~l~~-~~~d 219 (456)
..+++|.+.|++++|+.||++|++++.|+.|++|+++....... ...-.-+..+.+.|.| |.+-++. .-..
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap-----Dc~s~vv~~~~g 154 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP-----DCKSVVVSVKRG 154 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC-----CcceEEEEEccC
Confidence 34679999999999999999999999999999999986432110 0111123457888998 5555544 4455
Q ss_pred CcEEEEECCCCe---EE---------EEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEE
Q 012799 220 GDARIWDVSLRK---CV---------ICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNS 286 (456)
Q Consensus 220 g~i~iwd~~~~~---~~---------~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 286 (456)
.++++|-+...+ .. ..-+.|+..+..+-.-..+ ++++++.|..|.+|+++ |+.+..+......-..
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~ 233 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYD 233 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccc
Confidence 679998764321 11 0112456666666666666 89999999999999999 8999988877777777
Q ss_pred EEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC-------CCccccccc
Q 012799 287 LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-------QPKTRMTGH 359 (456)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~ 359 (456)
.+++|+ +.++++++---.+++|.+--.+ .....+.+|
T Consensus 234 aavSP~------------------------------------GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH 277 (420)
T KOG2096|consen 234 AAVSPD------------------------------------GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH 277 (420)
T ss_pred eeeCCC------------------------------------CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc
Confidence 888888 5669999999999999854322 234567899
Q ss_pred cccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (456)
Q Consensus 360 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 390 (456)
...|..++|||+++.+++.+.||++++||+.
T Consensus 278 ~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 278 QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred hhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 9999999999999999999999999999975
No 161
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.7e-22 Score=163.26 Aligned_cols=268 Identities=17% Similarity=0.221 Sum_probs=191.9
Q ss_pred CeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCCCccccc-cCcc-cce
Q 012799 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCWDPQTGKPSGNPL-SGHK-KWI 196 (456)
Q Consensus 121 ~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~-~~v 196 (456)
..+|++...|.|++||..+++.+..++++...+..+.|.. ....+.+|+.||+|++||++......+.. ..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688888999999999999999999999999999999987 56789999999999999999877655433 3333 234
Q ss_pred EEEEecccccCCCCCEEEEEeC----CCcEEEEECCCCeE-EEEe-cCcCccEEEEEeCCCC--eEEEEeCCCcEEEEEC
Q 012799 197 TGISWEPVHLNAPCRRFVSASK----DGDARIWDVSLRKC-VICL-SGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWET 268 (456)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~ 268 (456)
.+++-.. .++.+++|+. +-.|.+||++..+. +..+ ..|...|+++.|+|.. +|++|+.||.|.+||+
T Consensus 121 ~~ld~nc-----k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 121 ICLDLNC-----KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred eEeeccC-----cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 4444332 5677777754 67899999998776 4444 5799999999999977 9999999999999999
Q ss_pred CCCe---EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEe
Q 012799 269 TQGK---LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE 345 (456)
Q Consensus 269 ~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 345 (456)
.... .+...-.+...|..+.|..+. -+.+.+-+..++..+|+
T Consensus 196 ~~d~EeDaL~~viN~~sSI~~igw~~~~-----------------------------------ykrI~clTH~Etf~~~e 240 (376)
T KOG1188|consen 196 KKDNEEDALLHVINHGSSIHLIGWLSKK-----------------------------------YKRIMCLTHMETFAIYE 240 (376)
T ss_pred CCCcchhhHHHhhcccceeeeeeeecCC-----------------------------------cceEEEEEccCceeEEE
Confidence 7642 122222366778888887652 23588889999999999
Q ss_pred cCCCCCCcccccc-----------ccccEeEEEECC-CCCEEEEEEC-CCcEEEEeCC---C---CeEEEEEec-ccccE
Q 012799 346 PAVSKQPKTRMTG-----------HQQLVNHVYFSP-DGQWVASASF-DKSIKLWNGT---T---GKFVAVFRG-HVGPV 405 (456)
Q Consensus 346 ~~~~~~~~~~~~~-----------~~~~v~~~~~sp-~~~~l~s~~~-dg~i~iwd~~---~---~~~~~~~~~-~~~~v 405 (456)
+..+......-.. ....+-. +.+| ++...+.++. -|...++-+. + ++.+..+.+ |...|
T Consensus 241 le~~~~~~~~~~~~~~~~d~r~~~~~dY~I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiV 319 (376)
T KOG1188|consen 241 LEDGSEETWLENPDVSADDLRKEDNCDYVIN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIV 319 (376)
T ss_pred ccCCChhhcccCccchhhhHHhhhhhhheee-cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHH
Confidence 8766532211111 0111111 1234 4455555544 4555555333 3 334555665 66677
Q ss_pred EEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 406 YQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 406 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.++ .|...+.++.|||+||.+.+|
T Consensus 320 R~i---------------------------~~~~~~~~l~TGGEDG~l~~W 343 (376)
T KOG1188|consen 320 RDI---------------------------LFDVKNDVLYTGGEDGLLQAW 343 (376)
T ss_pred HHH---------------------------hhhcccceeeccCCCceEEEE
Confidence 777 778888999999999999999
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=6.2e-23 Score=193.51 Aligned_cols=246 Identities=24% Similarity=0.389 Sum_probs=200.0
Q ss_pred cccEEEEEECCCCCe----EEEEECCCcEEEEeCCCC------cceeEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEE
Q 012799 108 TEAVLSVAFSPDGRQ----LASGSGDTTVRLWDLNTQ------TPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQC 176 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~----l~~~~~d~~v~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~v 176 (456)
...-+.++|.+.|.. ||.|..||.|.+||...- ..+.+...|.+.|..+.|++. +++||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 445678999997765 888899999999998652 345667789999999999995 559999999999999
Q ss_pred EeCCCCCCcccc-ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCc--cEEEEEeCCCC-
Q 012799 177 WDPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL--AVTCVKWGGDG- 252 (456)
Q Consensus 177 wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~- 252 (456)
||+++-+..... .......|.+++|+.. ....|++++.+|.+.|||++..+.+..+..+.. .+..++|+|++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrk----vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRK----VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA 219 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchh----hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc
Confidence 999886544322 2235678999999873 345788999999999999999988888766554 47889999998
Q ss_pred -eEEEEeCCC---cEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCC
Q 012799 253 -VIYTGSQDC---TIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327 (456)
Q Consensus 253 -~l~~~~~dg---~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (456)
.+++++.|. .|.+||+|.- .+++++.+|...|.++.|++.
T Consensus 220 Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~----------------------------------- 264 (1049)
T KOG0307|consen 220 TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQ----------------------------------- 264 (1049)
T ss_pred eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCC-----------------------------------
Confidence 777777654 5999999864 577888899999999999987
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCC-EEEEEECCCcEEEEeCCCCe
Q 012799 328 APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTTGK 393 (456)
Q Consensus 328 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~~~ 393 (456)
+..++++++.|+.|.+|+..+++ .+..+....+++..+.|+|... .++.++-||.|.||.+..+.
T Consensus 265 D~~lllSsgkD~~ii~wN~~tgE-vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 265 DPRLLLSSGKDNRIICWNPNTGE-VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CchhhhcccCCCCeeEecCCCce-EeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 35679999999999999977654 4555666778999999999655 78899999999999987654
No 163
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.89 E-value=5.4e-21 Score=153.56 Aligned_cols=260 Identities=22% Similarity=0.332 Sum_probs=198.6
Q ss_pred CCCcEEEEeCCCCcc---eeEEecCCCCEEEEEEcC-CCCEEEEEeCC-------CeEEEEeCCCCCC---------ccc
Q 012799 128 GDTTVRLWDLNTQTP---MFKCTGHKNWVLCIAWSA-DGKHLVSGSKA-------GELQCWDPQTGKP---------SGN 187 (456)
Q Consensus 128 ~d~~v~vwd~~~~~~---~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d-------g~i~vwd~~~~~~---------~~~ 187 (456)
.|+.|.+.+++.... ...+..|.+.|..++-+| +.+.|+++..+ ..+.||.+..... +..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 467888887765432 234556889999999999 55566666542 2478998864322 221
Q ss_pred cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE-EEEe-----cCcCccEEEEEeCC--CCeEEEEeC
Q 012799 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICL-----SGHTLAVTCVKWGG--DGVIYTGSQ 259 (456)
Q Consensus 188 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~-----~~~~~~v~~~~~~~--~~~l~~~~~ 259 (456)
.-..+-+.|.++.|.| ++..+++.. |..|.+|++..+.. +..+ .++....++-+|+| ++.-+....
T Consensus 118 Ldteavg~i~cvew~P-----ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~ 191 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEP-----NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS 191 (370)
T ss_pred CCHHHhCceeeEEEcC-----CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC
Confidence 2234556899999999 778888776 78999999987655 2222 23466788889998 456667788
Q ss_pred CCcEEEEECCCCeEEEEe-ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC
Q 012799 260 DCTIKVWETTQGKLIREL-KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (456)
Q Consensus 260 dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 338 (456)
|+++..||+++.+....+ ..|...+..+.|+|+- ..+|+++++|
T Consensus 192 d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnk-----------------------------------q~~lvt~gDd 236 (370)
T KOG1007|consen 192 DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNK-----------------------------------QHILVTCGDD 236 (370)
T ss_pred CCcEEEEEccchhhhcchhhhhcceeeeccCCCCc-----------------------------------eEEEEEcCCC
Confidence 999999999998777666 4588899999999983 4569999999
Q ss_pred CcEEEEecCCCCCCccccccccccEeEEEECC-CCCEEEEEECCCcEEEEeCCCC-------------------------
Q 012799 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTG------------------------- 392 (456)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~------------------------- 392 (456)
|.|++||.+..+.++..+.+|...|.++.|+| ..++|.+|+.|..|.+|...+-
T Consensus 237 gyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~k 316 (370)
T KOG1007|consen 237 GYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVK 316 (370)
T ss_pred ccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcc
Confidence 99999999999999999999999999999999 4677999999999999964311
Q ss_pred ----eEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCC-eEEEeeCCCceEE
Q 012799 393 ----KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGSKDSTLKV 455 (456)
Q Consensus 393 ----~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~s~s~Dg~v~i 455 (456)
..+.++..|.+.|+++ +||.-.. .+|+-|.||++.|
T Consensus 317 pL~dg~l~tydehEDSVY~~---------------------------aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 317 PLQDGQLETYDEHEDSVYAL---------------------------AWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred cccccccccccccccceEEE---------------------------eeccCCCeeEEEeccCceEEe
Confidence 1234667788888888 8876555 5677899999865
No 164
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.1e-21 Score=164.53 Aligned_cols=271 Identities=14% Similarity=0.211 Sum_probs=204.7
Q ss_pred CcccEEEEEEeccceEEE----------e----ecccccccccCCcccEEEEEECCCCC-eEEEEECCCcEEEEeCCCCc
Q 012799 77 SVEKVLSIVYQPQAVFRI----------R----PVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQT 141 (456)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~----------~----~~~~~~~~l~~h~~~V~~~~~s~~~~-~l~~~~~d~~v~vwd~~~~~ 141 (456)
+...+..+.|+|.....+ . ..+..++.+.--..+|.+.+|.|+|. .+++++....++.||+.+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 345567788888653322 1 12334566666778999999999998 89999999999999998876
Q ss_pred cee--EEecCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC
Q 012799 142 PMF--KCTGHK-NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK 218 (456)
Q Consensus 142 ~~~--~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~ 218 (456)
... ...++. ..+.....++++++|+..|..|.|.+....+++.+. ...-.+.|..++|+. ++..|++.+.
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~--s~KieG~v~~~~fsS-----dsk~l~~~~~ 364 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELIT--SFKIEGVVSDFTFSS-----DSKELLASGG 364 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhh--eeeeccEEeeEEEec-----CCcEEEEEcC
Confidence 433 333443 457788899999999999999999999999888764 334567899999987 8899999999
Q ss_pred CCcEEEEECCCCeEEEEecCcC-ccEEEEEeCCCC-eEEEEeCCCcEEEEECCC------CeEEEEeecCCcceEEEEec
Q 012799 219 DGDARIWDVSLRKCVICLSGHT-LAVTCVKWGGDG-VIYTGSQDCTIKVWETTQ------GKLIRELKGHGHWVNSLALS 290 (456)
Q Consensus 219 dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~i~~~~~~ 290 (456)
+|.|++||++...++..+.... -.-+.++.++++ +|++|+..|.|.|||..+ .+++..+..-...|+++.|+
T Consensus 365 ~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn 444 (514)
T KOG2055|consen 365 TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN 444 (514)
T ss_pred CceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeC
Confidence 9999999999999998886322 234567777888 999999999999999654 45677777777889999999
Q ss_pred CcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe--CCCcEEEEecCCCCCCcc--ccccccccEeEE
Q 012799 291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS--DDFTMFLWEPAVSKQPKT--RMTGHQQLVNHV 366 (456)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~--~~~~~~~~v~~~ 366 (456)
++..+ ++.++ .+..+++-.+........ .....-+.|+|+
T Consensus 445 ~d~qi------------------------------------LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~ 488 (514)
T KOG2055|consen 445 HDAQI------------------------------------LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCM 488 (514)
T ss_pred cchhh------------------------------------hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEE
Confidence 98443 44433 455677666433211000 012233569999
Q ss_pred EECCCCCEEEEEECCCcEEEEeCC
Q 012799 367 YFSPDGQWVASASFDKSIKLWNGT 390 (456)
Q Consensus 367 ~~sp~~~~l~s~~~dg~i~iwd~~ 390 (456)
+|||.|.+||.|..+|.+.+|.+.
T Consensus 489 aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 489 AFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EecCCCceEEeecCCCceeeEeec
Confidence 999999999999999999999874
No 165
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.89 E-value=2.3e-21 Score=155.61 Aligned_cols=250 Identities=21% Similarity=0.357 Sum_probs=194.2
Q ss_pred cccccCCcccEEEEEECCC-CCeEEEEECC-------CcEEEEeCCCCc---------ceeEEe-cCCCCEEEEEEcCCC
Q 012799 101 SATIAGHTEAVLSVAFSPD-GRQLASGSGD-------TTVRLWDLNTQT---------PMFKCT-GHKNWVLCIAWSADG 162 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~-~~~l~~~~~d-------~~v~vwd~~~~~---------~~~~~~-~~~~~v~~~~~~~~~ 162 (456)
...|..|.+.|..++-+|. .+.|+++..+ -.+.||.+.... .+..+. .+-+.|.|+.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 4667889999999999995 4566666432 247899886432 223333 455689999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCc-ccc----ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe-
Q 012799 163 KHLVSGSKAGELQCWDPQTGKPS-GNP----LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL- 236 (456)
Q Consensus 163 ~~l~s~~~dg~i~vwd~~~~~~~-~~~----~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~- 236 (456)
..+++-. |..|.+|+++.+..+ ... ...+....++-+|+|.+ +++.+++.+ |++++.||+++.++...+
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHH---dgnqv~tt~-d~tl~~~D~RT~~~~~sI~ 210 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHH---DGNQVATTS-DSTLQFWDLRTMKKNNSIE 210 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCC---ccceEEEeC-CCcEEEEEccchhhhcchh
Confidence 9998876 789999999887652 211 22356667888999977 787777665 689999999998887776
Q ss_pred cCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHH
Q 012799 237 SGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM 313 (456)
Q Consensus 237 ~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (456)
.+|...|..+.|+|+. .|++|+.||.|++||.+.- .+++++.+|..++.++.|+|..
T Consensus 211 dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~h-------------------- 270 (370)
T KOG1007|consen 211 DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEH-------------------- 270 (370)
T ss_pred hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCcc--------------------
Confidence 4688899999999987 8999999999999999864 5788999999999999999974
Q ss_pred HHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC----------------------------CCccccccccccEeE
Q 012799 314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK----------------------------QPKTRMTGHQQLVNH 365 (456)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------------------------~~~~~~~~~~~~v~~ 365 (456)
.+++++|+.|..|.+|-..... ..+..+..|+..|.+
T Consensus 271 ---------------dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~ 335 (370)
T KOG1007|consen 271 ---------------DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYA 335 (370)
T ss_pred ---------------ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEE
Confidence 5678899999999888532110 122345679999999
Q ss_pred EEECCCCCE-EEEEECCCcEEEEeCC
Q 012799 366 VYFSPDGQW-VASASFDKSIKLWNGT 390 (456)
Q Consensus 366 ~~~sp~~~~-l~s~~~dg~i~iwd~~ 390 (456)
++||.-..+ +|+-+.||++.|=.+.
T Consensus 336 ~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 336 LAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred EeeccCCCeeEEEeccCceEEeecCC
Confidence 999986665 7788999999887654
No 166
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.89 E-value=4.4e-23 Score=187.81 Aligned_cols=277 Identities=23% Similarity=0.381 Sum_probs=213.5
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 179 (456)
.++.|.||..+|+|+.|...|.++++|+.|..++||..+++.++..+.||.+.|+.++.+.+..++++++.|..|++|.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEE---ec-CcCccEEEEEeCCCC-eE
Q 012799 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC---LS-GHTLAVTCVKWGGDG-VI 254 (456)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~-~~~~~v~~~~~~~~~-~l 254 (456)
..+.++. .+.+|.+.|++++|+| +.+.+.||++++||.+-.-.+.. .+ .....+..+.+...+ .+
T Consensus 262 ~~~~pvs-vLrghtgavtaiafsP---------~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f 331 (1113)
T KOG0644|consen 262 PDGAPVS-VLRGHTGAVTAIAFSP---------RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRF 331 (1113)
T ss_pred CCCchHH-HHhccccceeeeccCc---------cccCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccc
Confidence 9999886 7899999999999999 34788999999999871111111 00 122445566666666 88
Q ss_pred EEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799 255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (456)
Q Consensus 255 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (456)
.+++.|+.-..|....-.. +...+.-+..+.+ ...+.++
T Consensus 332 ~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd-----------------------------------~~~~~~~ 370 (1113)
T KOG0644|consen 332 LTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSD-----------------------------------LSSIVVT 370 (1113)
T ss_pred ccccCCcccccchhhHhhh------hccceEEEecccc-----------------------------------cccccee
Confidence 9999999888887643211 0000111111101 0233667
Q ss_pred EeCCCcEEEEecCCCCCCccccccccccEeEEEECCC-CCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeee
Q 012799 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELI 413 (456)
Q Consensus 335 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 413 (456)
+-.+-.+.+|++..+. ....+.+|...+..+.++|- .+...+++.||...|||+-.|.+++.+.-....+..-
T Consensus 371 ar~~~~~~vwnl~~g~-l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~----- 444 (1113)
T KOG0644|consen 371 ARNDHRLCVWNLYTGQ-LLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDG----- 444 (1113)
T ss_pred eeeeeEeeeeecccch-hhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeecc-----
Confidence 7778889999976654 45567789999999999994 4556689999999999999998877655323344444
Q ss_pred eeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799 414 YCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i 455 (456)
+||+||..++....-|.++|
T Consensus 445 ----------------------kFSqdgts~~lsd~hgql~i 464 (1113)
T KOG0644|consen 445 ----------------------KFSQDGTSIALSDDHGQLYI 464 (1113)
T ss_pred ----------------------ccCCCCceEecCCCCCceEE
Confidence 78999998888888887776
No 167
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.4e-22 Score=175.60 Aligned_cols=258 Identities=19% Similarity=0.336 Sum_probs=196.1
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC--------CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCe
Q 012799 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT--------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173 (456)
Q Consensus 102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 173 (456)
.++..|.+.|+.++|.|-...|++++.||++++|+++. -+++.++.+|.++|.|+++.+++..+++|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 47888999999999999999999999999999999932 2567889999999999999999999999999999
Q ss_pred EEEEeCCCCC---------CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC--cCcc
Q 012799 174 LQCWDPQTGK---------PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG--HTLA 242 (456)
Q Consensus 174 i~vwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~ 242 (456)
|+.|++.... .....+.+|...|+.+++++ ....|++++.||+++.|+.....+ .++.. ..+.
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-----~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-----TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecc-----cccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence 9999654221 23346789999999999998 667899999999999999876665 23321 2233
Q ss_pred EEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecC-------CcceEEEEecCcceeeeccccCCCCccCChHHH
Q 012799 243 VTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGH-------GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM 313 (456)
Q Consensus 243 v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (456)
-..+.+.... ..++...-+.--++++.....+..+... ...+.-+.++|.
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~--------------------- 500 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPT--------------------- 500 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCC---------------------
Confidence 3455554433 3334344444445555554444444321 123445555555
Q ss_pred HHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCe
Q 012799 314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK 393 (456)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~ 393 (456)
..+.+++..|+.|+++|..+ ..++.....|...++++++.|+|.+|++|+.||.+++|.+....
T Consensus 501 ---------------~~~~~~~hed~~Ir~~dn~~-~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 501 ---------------ADITFTAHEDRSIRFFDNKT-GKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred ---------------CCeeEecccCCceecccccc-cccchheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 45689999999999999554 45666778899999999999999999999999999999998777
Q ss_pred EEEEEeccc
Q 012799 394 FVAVFRGHV 402 (456)
Q Consensus 394 ~~~~~~~~~ 402 (456)
++.....|.
T Consensus 565 ~~~es~~~r 573 (577)
T KOG0642|consen 565 CVLESTAHR 573 (577)
T ss_pred eeecccccc
Confidence 766655553
No 168
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=3.4e-22 Score=163.25 Aligned_cols=245 Identities=20% Similarity=0.319 Sum_probs=187.7
Q ss_pred CCcccEEEEEECCC----CCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCC
Q 012799 106 GHTEAVLSVAFSPD----GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQ 180 (456)
Q Consensus 106 ~h~~~V~~~~~s~~----~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~ 180 (456)
.|.+.-..++|+-+ ..++|.|+.-|.|+|.|+.+++....+.+|...|+.+.+.|+ .+++++++.|..|++|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 47888899999864 348899999999999999999999999999999999999995 5799999999999999999
Q ss_pred CCCCccc--cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEE-------------------------
Q 012799 181 TGKPSGN--PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV------------------------- 233 (456)
Q Consensus 181 ~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------------------------- 233 (456)
+..++.. -..+|...|.++.|++ +|.+++++|.|.++++|++...+..
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~-----~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~f 241 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSL-----DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHF 241 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcC-----CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccc
Confidence 9987652 2568999999999999 9999999999999999998732210
Q ss_pred E---EecCcCccEEEEEeCCCCeEEEEeCCCcEEEEEC-CCCeEEE-------------EeecCCcceEEEEecCcceee
Q 012799 234 I---CLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWET-TQGKLIR-------------ELKGHGHWVNSLALSTEYALR 296 (456)
Q Consensus 234 ~---~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~ 296 (456)
. +-.-|...|-|+.|-.+ .+++-+-++.|..|.. +-++.+. .+......|.-+.|.-+
T Consensus 242 p~fst~diHrnyVDCvrw~gd-~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d---- 316 (385)
T KOG1034|consen 242 PDFSTTDIHRNYVDCVRWFGD-FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFD---- 316 (385)
T ss_pred ccccccccccchHHHHHHHhh-heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeec----
Confidence 0 11236667777777764 7888888899999987 2222222 22222222333333222
Q ss_pred eccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccccc---ccccEeEEEECCCCC
Q 012799 297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG---HQQLVNHVYFSPDGQ 373 (456)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~sp~~~ 373 (456)
+-...|+.|...|.+++||++....+...... ....|...+||.||.
T Consensus 317 ------------------------------~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs 366 (385)
T KOG1034|consen 317 ------------------------------PWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS 366 (385)
T ss_pred ------------------------------HHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc
Confidence 11455899999999999999887664332222 235789999999999
Q ss_pred EEEEEECCCcEEEEeCC
Q 012799 374 WVASASFDKSIKLWNGT 390 (456)
Q Consensus 374 ~l~s~~~dg~i~iwd~~ 390 (456)
+|+..+.|+.|.-||..
T Consensus 367 ~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 367 ILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEEeCCCcEEEEEee
Confidence 99999999999999853
No 169
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.5e-21 Score=157.37 Aligned_cols=242 Identities=16% Similarity=0.240 Sum_probs=171.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE
Q 012799 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC 232 (456)
Q Consensus 153 v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 232 (456)
..|+.|++.|.+||+|+.||.|.|||+.+.... +.+.+|..+|.+++|++ +|+.|++++.|..|.+||+..+.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia-r~lsaH~~pi~sl~WS~-----dgr~LltsS~D~si~lwDl~~gs~ 99 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA-RMLSAHVRPITSLCWSR-----DGRKLLTSSRDWSIKLWDLLKGSP 99 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchh-hhhhccccceeEEEecC-----CCCEeeeecCCceeEEEeccCCCc
Confidence 789999999999999999999999999988744 48999999999999999 999999999999999999999999
Q ss_pred EEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCCh
Q 012799 233 VICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP 310 (456)
Q Consensus 233 ~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (456)
++.+. ..++|+.+.|+|.. ..++.-.+..-.+-++..++ ... +..++++.+.....
T Consensus 100 l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~---------Lp~d~d~dln~sas---------- 157 (405)
T KOG1273|consen 100 LKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSV---------LPKDDDGDLNSSAS---------- 157 (405)
T ss_pred eeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eee---------ccCCCccccccccc----------
Confidence 88886 67899999999965 44444444444444444321 111 11111111100000
Q ss_pred HHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc-cccEeEEEECCCCCEEEEEECCCcEEEEeC
Q 012799 311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-QQLVNHVYFSPDGQWVASASFDKSIKLWNG 389 (456)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~ 389 (456)
..++...++++++|...|.+.++|..+.+ .+..++-. ...|.++.|+..|++|+.-+.|..||.|++
T Consensus 158 -----------~~~fdr~g~yIitGtsKGkllv~~a~t~e-~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~ 225 (405)
T KOG1273|consen 158 -----------HGVFDRRGKYIITGTSKGKLLVYDAETLE-CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEI 225 (405)
T ss_pred -----------cccccCCCCEEEEecCcceEEEEecchhe-eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEeh
Confidence 00122348899999999999999976553 33333322 367899999999999999999999999998
Q ss_pred CCCe------EEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC-CCceEEC
Q 012799 390 TTGK------FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DSTLKVT 456 (456)
Q Consensus 390 ~~~~------~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~-Dg~v~iW 456 (456)
+.-- .+.....-.+.|+.+.|+. .+||.||.|++.|+. --.++||
T Consensus 226 ~di~~~~r~~e~e~~~K~qDvVNk~~Wk~----------------------ccfs~dgeYv~a~s~~aHaLYIW 277 (405)
T KOG1273|consen 226 SDIDDEGRDGEVEPEHKLQDVVNKLQWKK----------------------CCFSGDGEYVCAGSARAHALYIW 277 (405)
T ss_pred hhhcccCccCCcChhHHHHHHHhhhhhhh----------------------eeecCCccEEEeccccceeEEEE
Confidence 7311 1111111123344443321 178999999988874 4557887
No 170
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.88 E-value=2e-20 Score=150.40 Aligned_cols=258 Identities=19% Similarity=0.234 Sum_probs=188.5
Q ss_pred ccEEEEEECC--C-CCeEEEEE----CCCcEEEEeCC--CCcceeEE-ecCCCCEEEEEEcCCC-----CEEEEEeCCCe
Q 012799 109 EAVLSVAFSP--D-GRQLASGS----GDTTVRLWDLN--TQTPMFKC-TGHKNWVLCIAWSADG-----KHLVSGSKAGE 173 (456)
Q Consensus 109 ~~V~~~~~s~--~-~~~l~~~~----~d~~v~vwd~~--~~~~~~~~-~~~~~~v~~~~~~~~~-----~~l~s~~~dg~ 173 (456)
-++.++.|+. + +.+||.|+ ..+.|.|-.+. +++.+..- ..|.-+++.+.|.|+. ++||+++ ..
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DF 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--Ce
Confidence 3577888883 2 34788887 34567776554 33322211 3689999999999976 3566554 37
Q ss_pred EEEEeCCCCC--Ccc------ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe---EEEEecCcCcc
Q 012799 174 LQCWDPQTGK--PSG------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVICLSGHTLA 242 (456)
Q Consensus 174 i~vwd~~~~~--~~~------~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~ 242 (456)
+++|.+...+ ... .....+..++++..|... +-+++.+.+-|.+..|||++++. ....+-+|...
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~----dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKE 198 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV----DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKE 198 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccC----CcceeEeecccCeEEEEEEeeccccceeeEEEecCcc
Confidence 9999987422 110 112345678999999875 55789999999999999999863 35567789999
Q ss_pred EEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEe---ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHH
Q 012799 243 VTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIREL---KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA 317 (456)
Q Consensus 243 v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (456)
|..++|...+ .|++.+.||.+|+||++..+--..+ .....+...++|++.
T Consensus 199 V~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkq------------------------- 253 (364)
T KOG0290|consen 199 VYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQ------------------------- 253 (364)
T ss_pred eeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcC-------------------------
Confidence 9999999966 8999999999999999976543333 222456677777765
Q ss_pred HhhhhhccCCCCCEEEEEeC-CCcEEEEecCCCCCCccccccccccEeEEEECCC-CCEEEEEECCCcEEEEeCCCCeE-
Q 012799 318 LERYNKIKGNAPERLVSGSD-DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKF- 394 (456)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~~~dg~i~iwd~~~~~~- 394 (456)
+.+++++-.. ...|.+.|++....++..+.+|.+.|+.++|.|. +..|++++.|..+.+||+...-.
T Consensus 254 ----------DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~ 323 (364)
T KOG0290|consen 254 ----------DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE 323 (364)
T ss_pred ----------CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccccc
Confidence 2445665444 4579999999999999999999999999999995 56799999999999999976321
Q ss_pred -----EEEEecccccEEEE
Q 012799 395 -----VAVFRGHVGPVYQI 408 (456)
Q Consensus 395 -----~~~~~~~~~~v~~i 408 (456)
+..+. -.+.|+.+
T Consensus 324 ~~~dPilay~-a~~EVNqi 341 (364)
T KOG0290|consen 324 NGEDPILAYT-AGGEVNQI 341 (364)
T ss_pred CCCCchhhhh-ccceeeee
Confidence 22222 45577777
No 171
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.3e-19 Score=142.18 Aligned_cols=248 Identities=21% Similarity=0.278 Sum_probs=179.5
Q ss_pred ccEEEEEECCCCCeEEEEECCCcEEEEeCCC----------CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 012799 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNT----------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 178 (456)
..|.+-+++|.+++|++|..+|.|.+..+++ ..++...++|.++|+.++|. ..+|++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 3566778999999999999999999998754 23445568999999999997 44677765 59999998
Q ss_pred CCCCCCc-------cccccCc-----ccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEE
Q 012799 179 PQTGKPS-------GNPLSGH-----KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCV 246 (456)
Q Consensus 179 ~~~~~~~-------~~~~~~~-----~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 246 (456)
++..... .....-| -..|.++...| ..+-++.++.|+.++-||+++++..+.+++|.+.|.++
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-----~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~v 162 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-----SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSV 162 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEecc-----CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeee
Confidence 8654321 0011112 23577777777 55667777799999999999999999999999999999
Q ss_pred EeC-CCCeEEEEeCCCcEEEEECCCCeEEEEeecC----------CcceEEEEecCcceeeeccccCCCCccCChHHHHH
Q 012799 247 KWG-GDGVIYTGSQDCTIKVWETTQGKLIRELKGH----------GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK 315 (456)
Q Consensus 247 ~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (456)
.-. .++.+++|+.||++++||+++++.++.+... ..+|-+++.+.+
T Consensus 163 v~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed----------------------- 219 (325)
T KOG0649|consen 163 VGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED----------------------- 219 (325)
T ss_pred eecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc-----------------------
Confidence 984 4559999999999999999999998877432 234555555544
Q ss_pred HHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEE
Q 012799 316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395 (456)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~ 395 (456)
.++ ++....+.+|.++....... ..-..++..+.|. ...+++++..+.|.-|.+ +|.+-
T Consensus 220 ---------------Wlv-CGgGp~lslwhLrsse~t~v--fpipa~v~~v~F~--~d~vl~~G~g~~v~~~~l-~Gvl~ 278 (325)
T KOG0649|consen 220 ---------------WLV-CGGGPKLSLWHLRSSESTCV--FPIPARVHLVDFV--DDCVLIGGEGNHVQSYTL-NGVLQ 278 (325)
T ss_pred ---------------eEE-ecCCCceeEEeccCCCceEE--EecccceeEeeee--cceEEEeccccceeeeee-ccEEE
Confidence 344 45556899999887653222 1234557777885 446788888888999986 45554
Q ss_pred EEEecccccEEEE
Q 012799 396 AVFRGHVGPVYQI 408 (456)
Q Consensus 396 ~~~~~~~~~v~~i 408 (456)
..........++.
T Consensus 279 a~ip~~s~~c~s~ 291 (325)
T KOG0649|consen 279 ANIPVESTACYSA 291 (325)
T ss_pred EeccCCccceeee
Confidence 4444433344444
No 172
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=9.1e-22 Score=168.92 Aligned_cols=290 Identities=20% Similarity=0.293 Sum_probs=224.9
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEE-ecCCCCEEEEEEcC--CCCEEEEEeCCCeEEE
Q 012799 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-TGHKNWVLCIAWSA--DGKHLVSGSKAGELQC 176 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~v 176 (456)
....|.+|.+.|..+.|+..|..|++|+.|..|.+||...+.....+ .+|...|....|-| +..-+++++.||.+++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 34678899999999999999999999999999999999998877666 48999999889988 4568999999999999
Q ss_pred EeCCCCCC-c-cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe---cCcCc---cEEEEEe
Q 012799 177 WDPQTGKP-S-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SGHTL---AVTCVKW 248 (456)
Q Consensus 177 wd~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~---~v~~~~~ 248 (456)
=.+..... . ...+..|.+.|..++..|.. -..|.+++.|+.+.-+|++...+...+ ..+.. ....++.
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~s----p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~ 289 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDS----PKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV 289 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCC----CCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence 87654332 2 23567899999999988853 357999999999999999876543332 22333 5678888
Q ss_pred CCCC--eEEEEeCCCcEEEEECCCCe------EEEEee------cCCcceEEEEecCcceeeeccccCCCCccCChHHHH
Q 012799 249 GGDG--VIYTGSQDCTIKVWETTQGK------LIRELK------GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK 314 (456)
Q Consensus 249 ~~~~--~l~~~~~dg~i~iwd~~~~~------~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (456)
+|.+ .+++++.|..+++||.+.-. .+..+. .....|++++++.+
T Consensus 290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~---------------------- 347 (559)
T KOG1334|consen 290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHD---------------------- 347 (559)
T ss_pred CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCC----------------------
Confidence 9866 89999999999999987522 122222 22345788888765
Q ss_pred HHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC------------Cccccccccc--cEeEEE-ECCCCCEEEEEE
Q 012799 315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ------------PKTRMTGHQQ--LVNHVY-FSPDGQWVASAS 379 (456)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------~~~~~~~~~~--~v~~~~-~sp~~~~l~s~~ 379 (456)
+.-++++-.|-.|+++....+.. ....+++|.. .|..+- |-|...|+++|+
T Consensus 348 --------------~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS 413 (559)
T KOG1334|consen 348 --------------GSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS 413 (559)
T ss_pred --------------ccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecC
Confidence 33366677788888885322211 1223567765 355664 567889999999
Q ss_pred CCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 380 FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 380 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.-|.|.||+-++++.++.+++....|+|+ .=+|--..||++|-|.-|+||
T Consensus 414 DCGhIFiW~K~t~eii~~MegDr~VVNCL---------------------------EpHP~~PvLAsSGid~DVKIW 463 (559)
T KOG1334|consen 414 DCGHIFIWDKKTGEIIRFMEGDRHVVNCL---------------------------EPHPHLPVLASSGIDHDVKIW 463 (559)
T ss_pred ccceEEEEecchhHHHHHhhcccceEecc---------------------------CCCCCCchhhccCCccceeee
Confidence 99999999999999999998887889988 668888899999999999999
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=1.1e-18 Score=164.23 Aligned_cols=286 Identities=40% Similarity=0.652 Sum_probs=224.3
Q ss_pred cccccccCCcccEEEEEECCCCCeEEEEEC-CCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEE
Q 012799 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSG-DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQC 176 (456)
Q Consensus 99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~-d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~v 176 (456)
.....+.+|...|.+++|+|+++.+++++. |+.+++|+...+..+..+.+|...|.+++|+|++. .+++++.|+.|++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 566778899999999999999998888885 99999999998888888999999999999999998 5555599999999
Q ss_pred EeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE-EEEecCcCccEEEEEeCCCC-eE
Q 012799 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICLSGHTLAVTCVKWGGDG-VI 254 (456)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~-~l 254 (456)
||...+......+..|.... ...|+| ++..+++++.|+.+++|++..... ...+..|...+.++.|.|++ .+
T Consensus 226 wd~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 226 WDLSTGKLLRSTLSGHSDSV-VSSFSP-----DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred EECCCCcEEeeecCCCCcce-eEeECC-----CCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEE
Confidence 98886655443466676664 337777 667888999999999999986664 44446788999999999966 77
Q ss_pred EEEeCCCcEEEEECCCCeEEEEee--cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE
Q 012799 255 YTGSQDCTIKVWETTQGKLIRELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (456)
Q Consensus 255 ~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 332 (456)
++++.|+.+.+||..+........ .|...+..+.+ ... +..+
T Consensus 300 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----------------------------------~~~~ 343 (466)
T COG2319 300 ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPD-----------------------------------GSLL 343 (466)
T ss_pred EEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCC-----------------------------------CCEE
Confidence 778888899999999887766665 66667888877 431 1224
Q ss_pred EEE-eCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEE-EECCCcEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799 333 VSG-SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS-ASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410 (456)
Q Consensus 333 ~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 410 (456)
+.+ ..|+.+.+|+..... ....... ...+..+.+++ ...++. +..++.+.+|+............+...+...
T Consensus 344 ~~~~~~d~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 418 (466)
T COG2319 344 VSGGSDDGTIRLWDLRTGK-PLKTLEG-HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSL-- 418 (466)
T ss_pred EEeecCCCcEEeeecCCCc-eeEEecC-CceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEE--
Confidence 444 678899999977665 2222222 22288899998 544444 6889999999999888877666554566666
Q ss_pred eeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.+++++..+++++.++.+++|
T Consensus 419 -------------------------~~~~~~~~~~~~~~~~~~~~~ 439 (466)
T COG2319 419 -------------------------DFSPDGKSLASGSSDNTIRLW 439 (466)
T ss_pred -------------------------EECCCCcEEEEecCCCcEEEE
Confidence 789999999999999999987
No 174
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=1.3e-20 Score=153.84 Aligned_cols=242 Identities=22% Similarity=0.346 Sum_probs=183.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC-------Ccc-----ccccCcccceEEEEeccc--ccCCCCCEEEEEeC
Q 012799 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGK-------PSG-----NPLSGHKKWITGISWEPV--HLNAPCRRFVSASK 218 (456)
Q Consensus 153 v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-------~~~-----~~~~~~~~~v~~~~~~~~--~~~~~~~~l~~~~~ 218 (456)
.....|+|||..|++-+.|..+++|++...- ... .........|...+|-+. ...++..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 4567899999999999999999999875321 110 011122345777777642 12336678999999
Q ss_pred CCcEEEEECCCCeEEEEecC--cC---ccEEEEEeCCCC-eEEEEeCCCcEEEEEC-CCCeEEEEe-------ecCCcce
Q 012799 219 DGDARIWDVSLRKCVICLSG--HT---LAVTCVKWGGDG-VIYTGSQDCTIKVWET-TQGKLIREL-------KGHGHWV 284 (456)
Q Consensus 219 dg~i~iwd~~~~~~~~~~~~--~~---~~v~~~~~~~~~-~l~~~~~dg~i~iwd~-~~~~~~~~~-------~~~~~~i 284 (456)
+.-|++||.-+++....+.+ |. ....+++|+||| .|+ ++....|++||+ +.|+..... .+..+.+
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlf-aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF-AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEe-ecccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999999988777654 22 245689999999 555 556688999999 555432211 1235678
Q ss_pred EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEe
Q 012799 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN 364 (456)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 364 (456)
.+++++|.. ...++.|+....+-||. ..+..+...+.+|.+.|+
T Consensus 211 sc~a~sP~~-----------------------------------~~~~a~gsY~q~~giy~-~~~~~pl~llggh~gGvT 254 (406)
T KOG2919|consen 211 SCFAFSPMD-----------------------------------SKTLAVGSYGQRVGIYN-DDGRRPLQLLGGHGGGVT 254 (406)
T ss_pred eeeeccCCC-----------------------------------CcceeeecccceeeeEe-cCCCCceeeecccCCCee
Confidence 889999873 44688999888888887 455667788889999999
Q ss_pred EEEECCCCCEEEEEEC-CCcEEEEeCCC-CeEEEEEecccc-cEEEEEeeeeeeecCCCCceeeecccccccceeEecCC
Q 012799 365 HVYFSPDGQWVASASF-DKSIKLWNGTT-GKFVAVFRGHVG-PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS 441 (456)
Q Consensus 365 ~~~~sp~~~~l~s~~~-dg~i~iwd~~~-~~~~~~~~~~~~-~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 441 (456)
.++|.++|+.|++|.. |-.|..||++. +.++..+..|.+ .-..|-| ...|+|
T Consensus 255 hL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~F-------------------------Dld~~~ 309 (406)
T KOG2919|consen 255 HLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILF-------------------------DLDPKG 309 (406)
T ss_pred eEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEE-------------------------ecCCCC
Confidence 9999999999999874 66899999987 566778888877 5566655 678999
Q ss_pred CeEEEeeCCCceEEC
Q 012799 442 RLLLSGSKDSTLKVT 456 (456)
Q Consensus 442 ~~l~s~s~Dg~v~iW 456 (456)
++|++|+.||.|++|
T Consensus 310 ~~LasG~tdG~V~vw 324 (406)
T KOG2919|consen 310 EILASGDTDGSVRVW 324 (406)
T ss_pred ceeeccCCCccEEEE
Confidence 999999999999999
No 175
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.87 E-value=2.9e-20 Score=164.84 Aligned_cols=149 Identities=26% Similarity=0.395 Sum_probs=118.9
Q ss_pred CccEEEEEeCCCC--eEEEEeCCCcEEEEECCCC-------eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCCh
Q 012799 240 TLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQG-------KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP 310 (456)
Q Consensus 240 ~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (456)
...|+.+.|+|-. .|++++.||.|++|.+..+ .+-..+..|...|+++.|+|-.
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLA----------------- 689 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLA----------------- 689 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchh-----------------
Confidence 3458899999944 9999999999999998653 3556788899999999999862
Q ss_pred HHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799 311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (456)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 390 (456)
.+.|++++.|.+|++||+++.. ....+.+|.+.|..++|||+|+.+|+.+.||+|++|+-+
T Consensus 690 ------------------advLa~asyd~Ti~lWDl~~~~-~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Pr 750 (1012)
T KOG1445|consen 690 ------------------ADVLAVASYDSTIELWDLANAK-LYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPR 750 (1012)
T ss_pred ------------------hhHhhhhhccceeeeeehhhhh-hhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCC
Confidence 4558999999999999987654 455688999999999999999999999999999999988
Q ss_pred CCeE-EEEEecccc-cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCC
Q 012799 391 TGKF-VAVFRGHVG-PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS 451 (456)
Q Consensus 391 ~~~~-~~~~~~~~~-~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg 451 (456)
+++. ++.-++..+ .--.+ .|.-||++++..|-|.
T Consensus 751 s~e~pv~Eg~gpvgtRgARi---------------------------~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 751 SREQPVYEGKGPVGTRGARI---------------------------LWACDGRIVIVVGFDK 786 (1012)
T ss_pred CCCCccccCCCCccCcceeE---------------------------EEEecCcEEEEecccc
Confidence 7643 333332222 11222 7888999988887765
No 176
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.87 E-value=1.4e-19 Score=166.25 Aligned_cols=260 Identities=19% Similarity=0.324 Sum_probs=190.9
Q ss_pred CcEEEEeCCCC-cceeEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCc-----cccccCcccceEEEEec
Q 012799 130 TTVRLWDLNTQ-TPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGKPS-----GNPLSGHKKWITGISWE 202 (456)
Q Consensus 130 ~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~-----~~~~~~~~~~v~~~~~~ 202 (456)
+.+.||++... .+...+ .-...|+|+.|+| +..+++.|..+|.|.+||++.+... ......|..+++.+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 47999999876 333444 3678899999999 6778888999999999999877652 22356788999999998
Q ss_pred ccccCCCCCEEEEEeCCCcEEEEECCCCeEE------EEec------CcCccEEEEEeCCCC--eEEEEeCCCcEEEEEC
Q 012799 203 PVHLNAPCRRFVSASKDGDARIWDVSLRKCV------ICLS------GHTLAVTCVKWGGDG--VIYTGSQDCTIKVWET 268 (456)
Q Consensus 203 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~------~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~ 268 (456)
... .+.-|++++.||.|..|+++.-... .... .....+++++|.+.. .+++|+.+|.|.--+.
T Consensus 301 ~~~---~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r 377 (555)
T KOG1587|consen 301 QNE---HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCR 377 (555)
T ss_pred ccC---CCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEec
Confidence 843 3356999999999999988643321 0011 123468899998865 8999999999887443
Q ss_pred CCCe--------EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCc
Q 012799 269 TQGK--------LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (456)
Q Consensus 269 ~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 340 (456)
...+ ....+..|.++|.++.++|-+ ...+++++ |-+
T Consensus 378 ~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~-----------------------------------~k~fls~g-DW~ 421 (555)
T KOG1587|consen 378 KGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFY-----------------------------------PKNFLSVG-DWT 421 (555)
T ss_pred cCCcccccccccccccccccCcceEeeecCCCc-----------------------------------cceeeeec-cce
Confidence 3221 123445688899999998863 22344444 999
Q ss_pred EEEEecCCCCCCccccccccccEeEEEECCCC-CEEEEEECCCcEEEEeCCCC--eEEEEEecccccEEEEEeeeeeeec
Q 012799 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTG--KFVAVFRGHVGPVYQIRFELIYCFR 417 (456)
Q Consensus 341 i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~ 417 (456)
+++|.......++..+..+...+++++|||-. ..++++..||.+.+||+... .++.....+....+.+
T Consensus 422 vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~--------- 492 (555)
T KOG1587|consen 422 VRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRV--------- 492 (555)
T ss_pred eEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccccccccee---------
Confidence 99999654666777777888889999999954 46888889999999998653 2333333333333344
Q ss_pred CCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.|+++|+.|+.|...|++.+|
T Consensus 493 ------------------~~s~~g~~lavGd~~G~~~~~ 513 (555)
T KOG1587|consen 493 ------------------RWSPNGKLLAVGDANGTTHIL 513 (555)
T ss_pred ------------------ecCCCCcEEEEecCCCcEEEE
Confidence 789999999999999999875
No 177
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=1.8e-20 Score=157.47 Aligned_cols=270 Identities=21% Similarity=0.276 Sum_probs=193.5
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCC--------C--------CcceeEEecCCCCEEEEEEcCCCCE
Q 012799 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN--------T--------QTPMFKCTGHKNWVLCIAWSADGKH 164 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~ 164 (456)
...|..|...|+++.|+|+|++||+|+.+|.|.+|... + -.....+.+|...|..++|+|++.+
T Consensus 58 ~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~ 137 (434)
T KOG1009|consen 58 LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF 137 (434)
T ss_pred eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce
Confidence 45788999999999999999999999999999999765 2 1233556789999999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec-------
Q 012799 165 LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS------- 237 (456)
Q Consensus 165 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------- 237 (456)
+++++.|..+++||+..|+... .+..|...+..++|.| -++++++-+.|...+.+.+...+.+....
T Consensus 138 l~s~s~dns~~l~Dv~~G~l~~-~~~dh~~yvqgvawDp-----l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~ 211 (434)
T KOG1009|consen 138 LVSGSVDNSVRLWDVHAGQLLA-ILDDHEHYVQGVAWDP-----LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAK 211 (434)
T ss_pred eeeeeccceEEEEEeccceeEe-eccccccccceeecch-----hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeec
Confidence 9999999999999999999876 7889999999999999 66888888888877777765433322111
Q ss_pred ------------Cc----CccEEEEEeCCCC-eEEEEeC----CC-----cEEEEECCC-CeEEEEeecCCcceEEEEec
Q 012799 238 ------------GH----TLAVTCVKWGGDG-VIYTGSQ----DC-----TIKVWETTQ-GKLIRELKGHGHWVNSLALS 290 (456)
Q Consensus 238 ------------~~----~~~v~~~~~~~~~-~l~~~~~----dg-----~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~ 290 (456)
.| ..-...++|+|+| .+++.+. .+ ..++|+-.. .++...+.....+...+.++
T Consensus 212 ~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~ 291 (434)
T KOG1009|consen 212 AFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFS 291 (434)
T ss_pred ccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEee
Confidence 01 1224567889999 5554322 22 234454332 24455566666777777777
Q ss_pred CcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECC
Q 012799 291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP 370 (456)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp 370 (456)
|-+.-... ....... +..+-..+++-.....+++||..........-.-|-..++.++|++
T Consensus 292 pVy~elrp-~~~~~~~------------------~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~ 352 (434)
T KOG1009|consen 292 PVYYELRP-LSSEKFL------------------FVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSD 352 (434)
T ss_pred eeEEEecc-ccccccc------------------cccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecC
Confidence 75422111 1111001 1111223444444568999997766666566667889999999999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEE
Q 012799 371 DGQWVASASFDKSIKLWNGTTGKFV 395 (456)
Q Consensus 371 ~~~~l~s~~~dg~i~iwd~~~~~~~ 395 (456)
||.+|+..+.||...+--++..++-
T Consensus 353 dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 353 DGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred CCcEEEEeccCCceEEEEEcchhcc
Confidence 9999999999998888877765543
No 178
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=2.4e-20 Score=166.27 Aligned_cols=243 Identities=19% Similarity=0.310 Sum_probs=186.7
Q ss_pred ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 012799 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (456)
Q Consensus 98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 177 (456)
+...++|+||.+.|+|++|+.||+.+|+|+.|+.|.+|+-.- +-+..+ .|.+.|.|+.|+|-...|++++.. ..-+|
T Consensus 43 G~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglW 119 (1081)
T KOG1538|consen 43 GTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLW 119 (1081)
T ss_pred cccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeee-ccCCeeeEeecCchHHHhhhcchh-hcccc
Confidence 456789999999999999999999999999999999998542 223333 499999999999999999998865 47788
Q ss_pred eCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEE--EecCcCccEEEEEeCCCC---
Q 012799 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI--CLSGHTLAVTCVKWGGDG--- 252 (456)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~--- 252 (456)
......... ......+.+++|.. ||++++.|-.+|+|.+-+-.....+. .-.+...+|.+++|+|..
T Consensus 120 S~~qK~V~K---~kss~R~~~CsWtn-----DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G 191 (1081)
T KOG1538|consen 120 SPEQKSVSK---HKSSSRIICCSWTN-----DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEG 191 (1081)
T ss_pred ChhhhhHHh---hhhheeEEEeeecC-----CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCC
Confidence 876544322 22345688899988 99999999999999998654333222 223577899999999843
Q ss_pred ---eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCC
Q 012799 253 ---VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (456)
Q Consensus 253 ---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (456)
.+++.....++.+|.+. |+.+..-+.-+-.-.++.+.++ |
T Consensus 192 ~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~N------------------------------------G 234 (1081)
T KOG1538|consen 192 RNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTN------------------------------------G 234 (1081)
T ss_pred ccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccC------------------------------------C
Confidence 67788888888888875 4444433333334456666665 7
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (456)
Q Consensus 330 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 390 (456)
++++.|+.|+.+.+|. +.+ ...-.....+.+|+.++..|++++++.|+.||+|-.|++.
T Consensus 235 Ey~LiGGsdk~L~~fT-R~G-vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 235 EYILLGGSDKQLSLFT-RDG-VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred cEEEEccCCCceEEEe-ecC-eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 8899999999999997 433 2333444567899999999999999999999999999853
No 179
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=3e-20 Score=163.59 Aligned_cols=242 Identities=19% Similarity=0.298 Sum_probs=188.3
Q ss_pred eEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC---
Q 012799 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG--- 220 (456)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg--- 220 (456)
..+.+|.+.|.++...|.|.+|++|+.||+|+||.+.+|.++... ...+.|.+++|+|.. +-..||++-.+.
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~--~~d~~I~~vaw~P~~---~~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV--QFDSEIRSVAWNPLS---DLCVLAVAVGECVLI 468 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE--eecceeEEEEecCCC---CceeEEEEecCceEE
Confidence 456799999999999999999999999999999999999988633 345689999999953 333444433322
Q ss_pred -----------------------------cEEEEECCCC----eEEEEecCcCccEEEEEeCCCC-eEEEEeCC---CcE
Q 012799 221 -----------------------------DARIWDVSLR----KCVICLSGHTLAVTCVKWGGDG-VIYTGSQD---CTI 263 (456)
Q Consensus 221 -----------------------------~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d---g~i 263 (456)
.+..|.-... .-+...-.|...|..+.|+..| +|++...+ ..|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 2233322110 0122333578889999999999 88876654 468
Q ss_pred EEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEE
Q 012799 264 KVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL 343 (456)
Q Consensus 264 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 343 (456)
.|+++...+...-|....+.+.++.|+|.. .++++++ ...|++
T Consensus 549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~------------------------------------p~lfVaT-q~~vRi 591 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSK------------------------------------PYLFVAT-QRSVRI 591 (733)
T ss_pred EEEecccccccCchhhcCCceeEEEecCCC------------------------------------ceEEEEe-ccceEE
Confidence 999998877777777777889999999973 3355554 458999
Q ss_pred EecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCC-eEEEEEecccccEEEEEeeeeeeecCCCCc
Q 012799 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQIRFELIYCFRYPSNF 422 (456)
Q Consensus 344 wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~ 422 (456)
||+.. +..+.++......|..++.+|.|.-|+.|+.|+.+..+|+.-+ +..++++.|...++++
T Consensus 592 YdL~k-qelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~V-------------- 656 (733)
T KOG0650|consen 592 YDLSK-QELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSV-------------- 656 (733)
T ss_pred EehhH-HHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhh--------------
Confidence 99876 4455556666788999999999999999999999999998764 5677889999999999
Q ss_pred eeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799 423 YCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 423 ~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i 455 (456)
+|++.-.++++|+.||++.|
T Consensus 657 -------------a~H~ryPLfas~sdDgtv~V 676 (733)
T KOG0650|consen 657 -------------AFHKRYPLFASGSDDGTVIV 676 (733)
T ss_pred -------------hhccccceeeeecCCCcEEE
Confidence 88999999999999999876
No 180
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.86 E-value=1.8e-19 Score=145.05 Aligned_cols=239 Identities=20% Similarity=0.340 Sum_probs=182.7
Q ss_pred cCCcccEEEEEECCCC-----CeEEEEECCCcEEEEeCCCCccee----E-----EecCCCCEEEEEEcC-CCCEEEEEe
Q 012799 105 AGHTEAVLSVAFSPDG-----RQLASGSGDTTVRLWDLNTQTPMF----K-----CTGHKNWVLCIAWSA-DGKHLVSGS 169 (456)
Q Consensus 105 ~~h~~~V~~~~~s~~~-----~~l~~~~~d~~v~vwd~~~~~~~~----~-----~~~~~~~v~~~~~~~-~~~~l~s~~ 169 (456)
..|.-+++.+.|.|+. ++||+++ | .+|+|.+...+... . -..+..++++..|+. +.++|.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 4799999999999986 3566654 3 69999987422111 1 124678899999997 778999999
Q ss_pred CCCeEEEEeCCCCCC--ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe---cCcCccEE
Q 012799 170 KAGELQCWDPQTGKP--SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SGHTLAVT 244 (456)
Q Consensus 170 ~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~ 244 (456)
-|-+..|||++++.. +.+.+..|.++|..++|... .-+.|++.|.||.+++||++..+.-..+ .....+..
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~----s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLl 246 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKG----SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLL 246 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccC----ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcce
Confidence 999999999999743 55678899999999999872 3468999999999999999876654433 22256788
Q ss_pred EEEeCCCC--eEEEEeCC-CcEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhh
Q 012799 245 CVKWGGDG--VIYTGSQD-CTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320 (456)
Q Consensus 245 ~~~~~~~~--~l~~~~~d-g~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (456)
.++|++.. ++++-..| ..|.+.|++.. .++..+++|...|+.++|.|.
T Consensus 247 RLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPh---------------------------- 298 (364)
T KOG0290|consen 247 RLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPH---------------------------- 298 (364)
T ss_pred eeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCC----------------------------
Confidence 99999876 66665444 56999999874 678899999999999999997
Q ss_pred hhhccCCCCCEEEEEeCCCcEEEEecCCCCC-----CccccccccccEeEEEECC-CCCEEEEEECCCcEEE
Q 012799 321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-----PKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKL 386 (456)
Q Consensus 321 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~i 386 (456)
....++++++|....+||+..... ++.... -.+.|+.+.|++ .+.+++.+. ++.+.+
T Consensus 299 -------S~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 299 -------SSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred -------CCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 366799999999999999865432 222222 456799999997 567777765 333443
No 181
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=2e-19 Score=168.37 Aligned_cols=292 Identities=21% Similarity=0.313 Sum_probs=206.3
Q ss_pred cccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecC---CCCEEEEEEcC--CCCEEEEEeCCCeEEEE
Q 012799 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGH---KNWVLCIAWSA--DGKHLVSGSKAGELQCW 177 (456)
Q Consensus 103 ~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~---~~~v~~~~~~~--~~~~l~s~~~dg~i~vw 177 (456)
...+...+-..+.|+|-...++++...-.|+|||.+.++.+..+..+ ...|+.+.+-. |..++++|+.||.|+||
T Consensus 1059 ~~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIw 1138 (1387)
T KOG1517|consen 1059 FMTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIW 1138 (1387)
T ss_pred HHhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEe
Confidence 34455556778899998888999887779999999998887776543 46788888865 56689999999999999
Q ss_pred eCCCCC-Cccc----------cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CcCccEEE
Q 012799 178 DPQTGK-PSGN----------PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTC 245 (456)
Q Consensus 178 d~~~~~-~~~~----------~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~ 245 (456)
+--... ...+ ...+..+.-.-+.|.. ...+|+++|.-..|+|||.....++..+. +....+++
T Consensus 1139 k~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ-----~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTa 1213 (1387)
T KOG1517|consen 1139 KDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQ-----QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTA 1213 (1387)
T ss_pred cccccccCCceeEEeeccccccCccCCCCCeeeehhh-----hCCeEEecCCeeEEEEEecccceeEeecccCCCcccee
Confidence 743221 1000 1111122223455655 44577777778999999999888877764 34456777
Q ss_pred EEeCC-CC-eEEEEeCCCcEEEEECCCCe---EEEEeecCCcc--eEEEEecCcceeeeccccCCCCccCChHHHHHHHH
Q 012799 246 VKWGG-DG-VIYTGSQDCTIKVWETTQGK---LIRELKGHGHW--VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (456)
Q Consensus 246 ~~~~~-~~-~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (456)
+.-+- .| .+++|..||.|++||.+... .+...+.|... |..+.+.+.+
T Consensus 1214 LS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G------------------------- 1268 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG------------------------- 1268 (1387)
T ss_pred ecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC-------------------------
Confidence 76554 33 89999999999999998753 45566667766 8888887752
Q ss_pred hhhhhccCCCCCEEEEEeCCCcEEEEecCCC-CCCcccccccc--c-cEeEEEECCCCCEEEEEECCCcEEEEeCCCCeE
Q 012799 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVS-KQPKTRMTGHQ--Q-LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF 394 (456)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~--~-~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~ 394 (456)
-..+++|+.+|.|++||++.. .........|. + ..+++..+++...+|+|+. +.|+||++ .|+.
T Consensus 1269 ----------~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~-~G~~ 1336 (1387)
T KOG1517|consen 1269 ----------LGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSL-SGEQ 1336 (1387)
T ss_pred ----------CcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEec-Chhh
Confidence 124999999999999999884 22222223332 3 4899999999999999998 99999997 4666
Q ss_pred EEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 395 VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 395 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+..++.+.+... .....+.+++|+|-.-+||+|+.|.+|.|.
T Consensus 1337 l~~~k~n~~F~~--------------------q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1337 LNIIKYNPGFMG--------------------QRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred hcccccCccccc--------------------CcCCCcceeeecchhHhhhhccCCceEEEe
Confidence 665553322110 011112444999999999999999999873
No 182
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=4e-20 Score=152.05 Aligned_cols=265 Identities=15% Similarity=0.235 Sum_probs=188.3
Q ss_pred ccccccccCCcccEEEEEECC--CCCeEEEEECCCcEEEEeCCCCcceeEE--ecCC-CCEEEEEEcCCCCEEEEEeC--
Q 012799 98 NRCSATIAGHTEAVLSVAFSP--DGRQLASGSGDTTVRLWDLNTQTPMFKC--TGHK-NWVLCIAWSADGKHLVSGSK-- 170 (456)
Q Consensus 98 ~~~~~~l~~h~~~V~~~~~s~--~~~~l~~~~~d~~v~vwd~~~~~~~~~~--~~~~-~~v~~~~~~~~~~~l~s~~~-- 170 (456)
++....+++|...++.+.|.. ....+.+|+.||+|++||++.......+ ..+. .+..|++.+-.++.+++|..
T Consensus 60 g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~ 139 (376)
T KOG1188|consen 60 GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELT 139 (376)
T ss_pred hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccc
Confidence 457888999999999999987 4567889999999999999886655443 3454 56778888778888888754
Q ss_pred --CCeEEEEeCCCCCC-ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe---EEEEecCcCccEE
Q 012799 171 --AGELQCWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVICLSGHTLAVT 244 (456)
Q Consensus 171 --dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~ 244 (456)
+-.|.+||++..+. +......|...|++++|+|. +.+.|++|+.||-|.+||++... .+...-.+...|.
T Consensus 140 ~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~----~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~ 215 (376)
T KOG1188|consen 140 RSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS----DPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIH 215 (376)
T ss_pred cCceEEEEEEeccccchhhhhhhhccCcceeEEecCC----CCCeEEeecccceEEeeecCCCcchhhHHHhhcccceee
Confidence 56799999998877 66677889999999999995 56799999999999999997542 2223334778899
Q ss_pred EEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhh
Q 012799 245 CVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322 (456)
Q Consensus 245 ~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (456)
++.|..++ .+.+-+..++..+|+++.+.....+....- .... ..........+.
T Consensus 216 ~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~--~~~d----------------------~r~~~~~dY~I~ 271 (376)
T KOG1188|consen 216 LIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDV--SADD----------------------LRKEDNCDYVIN 271 (376)
T ss_pred eeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccc--hhhh----------------------HHhhhhhhheee
Confidence 99999988 899999999999999998775443332100 0000 000000001111
Q ss_pred hccCCCCCEEEEEeC-CCcEEEEecCC--C---CCCccccc-cccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799 323 KIKGNAPERLVSGSD-DFTMFLWEPAV--S---KQPKTRMT-GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (456)
Q Consensus 323 ~~~~~~~~~l~~~~~-dg~i~iwd~~~--~---~~~~~~~~-~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 390 (456)
.....+....+.++. -+...++-+.. . ......+. +|...|+++.|...+.++.||++||.+.+|...
T Consensus 272 ~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 272 EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 112223344444443 56655554331 1 12333344 478889999999889999999999999999853
No 183
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.85 E-value=3e-19 Score=169.70 Aligned_cols=263 Identities=15% Similarity=0.193 Sum_probs=184.5
Q ss_pred eecccccccccCCcccEEEEEECCCC-CeEEEEECCCcEEEEeCCCC-------cceeEEecCCCCEEEEEEcCCCCEEE
Q 012799 95 RPVNRCSATIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQ-------TPMFKCTGHKNWVLCIAWSADGKHLV 166 (456)
Q Consensus 95 ~~~~~~~~~l~~h~~~V~~~~~s~~~-~~l~~~~~d~~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~ 166 (456)
.|.+..++.|..|...|..++.++.. .++++||.||+|++||...- +...++..-...+.++.+.+.++.+|
T Consensus 1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred CccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence 45667889999999999999998765 99999999999999998642 12234444578899999999999999
Q ss_pred EEeCCCeEEEEeCCCCCCcc------ccccC-cccceEEE-EecccccCCCCC-EEEEEeCCCcEEEEECCCCeEEEEec
Q 012799 167 SGSKAGELQCWDPQTGKPSG------NPLSG-HKKWITGI-SWEPVHLNAPCR-RFVSASKDGDARIWDVSLRKCVICLS 237 (456)
Q Consensus 167 s~~~dg~i~vwd~~~~~~~~------~~~~~-~~~~v~~~-~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~ 237 (456)
.++.||.|++.+++..+... ..... ..+.+.++ +|... .+. .++.+...+.|..||+++.....+++
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~----~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk 1190 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAI----VQSHVLVYATDLSRIVSWDTRMRHDAWRLK 1190 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeeccccc----ccceeEEEEEeccceEEecchhhhhHHhhh
Confidence 99999999999987632111 01111 12233333 23221 333 78888999999999998876655553
Q ss_pred --CcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeec-CCcceEEEEecCcceeeeccccCCCCccCChHHH
Q 012799 238 --GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM 313 (456)
Q Consensus 238 --~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (456)
...+.|++++.+|.+ .++.|+..|.+.+||+|-+.++..... +..++..+..+|-..-
T Consensus 1191 ~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~------------------ 1252 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQ------------------ 1252 (1431)
T ss_pred cCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCC------------------
Confidence 345789999999988 999999999999999999988887753 4567888887775321
Q ss_pred HHHHHhhhhhccCCCCCE-EEEEe-CCCcEEEEecCCCCCCccccc------------------cccccEeEEEECCCCC
Q 012799 314 KKAALERYNKIKGNAPER-LVSGS-DDFTMFLWEPAVSKQPKTRMT------------------GHQQLVNHVYFSPDGQ 373 (456)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~-l~~~~-~dg~i~iwd~~~~~~~~~~~~------------------~~~~~v~~~~~sp~~~ 373 (456)
... +.+++ ..+.+.+|++.++........ .+.-.....++.--+.
T Consensus 1253 ---------------~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~ 1317 (1431)
T KOG1240|consen 1253 ---------------ESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNG 1317 (1431)
T ss_pred ---------------CceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCc
Confidence 112 33333 567788888766532211111 1111222334444456
Q ss_pred EEEEEECCCcEEEEeCCCCeE
Q 012799 374 WVASASFDKSIKLWNGTTGKF 394 (456)
Q Consensus 374 ~l~s~~~dg~i~iwd~~~~~~ 394 (456)
++.+|+.|..|+.||....+.
T Consensus 1318 ~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1318 FLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred eeeecCCccceeeccCCCccc
Confidence 899999999999999765443
No 184
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=1.2e-19 Score=152.07 Aligned_cols=226 Identities=20% Similarity=0.322 Sum_probs=168.3
Q ss_pred ccccCCcccEEEEEECC-CCCeEEEEECCCcEEEEeCCCC-------cceeEEecCCCCEEEEEEcC-CCCEEEEEeCCC
Q 012799 102 ATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-------TPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAG 172 (456)
Q Consensus 102 ~~l~~h~~~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg 172 (456)
-.+.||+++|..++|+| +...+|+||.|.+|.||++..+ +++..+.+|...|--++|+| -.+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 45679999999999999 5678999999999999998654 45677889999999999999 467899999999
Q ss_pred eEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCc-cEEEEEeCCC
Q 012799 173 ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL-AVTCVKWGGD 251 (456)
Q Consensus 173 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~ 251 (456)
+|.+||+.+|+.... + .|...|++++|+. +|.+|++.+.|..|+|||.++++.+..-.+|.+ .-..+.|..+
T Consensus 155 ~v~iWnv~tgeali~-l-~hpd~i~S~sfn~-----dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~ 227 (472)
T KOG0303|consen 155 TVSIWNVGTGEALIT-L-DHPDMVYSMSFNR-----DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLAS 227 (472)
T ss_pred eEEEEeccCCceeee-c-CCCCeEEEEEecc-----CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEecc
Confidence 999999999987753 3 3999999999998 999999999999999999999999988877754 3455667777
Q ss_pred CeEEEEe----CCCcEEEEECCCCe---EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhc
Q 012799 252 GVIYTGS----QDCTIKVWETTQGK---LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324 (456)
Q Consensus 252 ~~l~~~~----~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (456)
+.+++.+ .+..+-+||..+-+ ...++.. .+.|.---+.++..
T Consensus 228 g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~------------------------------ 276 (472)
T KOG0303|consen 228 GKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTS------------------------------ 276 (472)
T ss_pred CceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCC------------------------------
Confidence 7555544 35679999876532 2233332 22333333444422
Q ss_pred cCCCCCEEEEEeCCCcEEEEecCCCCCCccccc--cccccEeEEEECC
Q 012799 325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT--GHQQLVNHVYFSP 370 (456)
Q Consensus 325 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~sp 370 (456)
-..++|-.|+.|+.|.+......+..+. ....+-..+.|-|
T Consensus 277 -----ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mP 319 (472)
T KOG0303|consen 277 -----IVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMP 319 (472)
T ss_pred -----EEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccc
Confidence 2366788899999999766543333221 1223344455554
No 185
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.84 E-value=6.9e-19 Score=161.68 Aligned_cols=246 Identities=18% Similarity=0.261 Sum_probs=186.2
Q ss_pred CcccEEEEEECC-CCCeEEEEECCCcEEEEeCCCCcc--eeE----EecCCCCEEEEEEcCCC--CEEEEEeCCCeEEEE
Q 012799 107 HTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTP--MFK----CTGHKNWVLCIAWSADG--KHLVSGSKAGELQCW 177 (456)
Q Consensus 107 h~~~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~~~~--~~~----~~~~~~~v~~~~~~~~~--~~l~s~~~dg~i~vw 177 (456)
-...|+|+.|+| +..++|.|+.+|.|.+||+..+.. ... ...|..+++.+.|..+. .-+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 356899999999 567888888999999999987654 222 23689999999998744 459999999999999
Q ss_pred eCCCCCCccc-----cc------cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEEC---CCCe-----EEEEecC
Q 012799 178 DPQTGKPSGN-----PL------SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV---SLRK-----CVICLSG 238 (456)
Q Consensus 178 d~~~~~~~~~-----~~------~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~---~~~~-----~~~~~~~ 238 (456)
+++.-..... .. ......+++++|.+. +-..|++|+.+|.|.-=+- +... ....+..
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~----~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~ 396 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT----DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFIT 396 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccC----CCceEEEEcCCcEEEEEeccCCcccccccccccccccc
Confidence 8764332110 00 112345788999885 4467999999999887332 2211 2334556
Q ss_pred cCccEEEEEeCCCC-eEEEEeCCCcEEEEECC-CCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHH
Q 012799 239 HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316 (456)
Q Consensus 239 ~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (456)
|.++|.++.++|=+ .++..+.|-++++|... ...++..+..+...+++++|+|..
T Consensus 397 h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptr----------------------- 453 (555)
T KOG1587|consen 397 HIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTR----------------------- 453 (555)
T ss_pred cCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcC-----------------------
Confidence 88999999999977 44444449999999988 667777787788889999999973
Q ss_pred HHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC-CCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCC
Q 012799 317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391 (456)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 391 (456)
...++++..||.+.+||+.... .+.....-+....+.+.|+++|+.|+.|...|.+.+|++..
T Consensus 454 ------------pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 454 ------------PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ------------ceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 4458999999999999987543 34444444466778889999999999999999999999864
No 186
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.84 E-value=4.5e-19 Score=154.35 Aligned_cols=263 Identities=19% Similarity=0.313 Sum_probs=186.9
Q ss_pred CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCE-EEEEEcC-------CCCEEEEEeCCCeEEEE
Q 012799 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV-LCIAWSA-------DGKHLVSGSKAGELQCW 177 (456)
Q Consensus 106 ~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~-------~~~~l~s~~~dg~i~vw 177 (456)
-|...|.|+.|+.+...+.+++.+-.+.-||+.+.. ...+.-....+ +.+..-+ ....++.++.||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchh-hhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 477788899999888776666544444444544322 11111111111 1111111 23578889999999998
Q ss_pred eCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEE
Q 012799 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTG 257 (456)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~ 257 (456)
+- .++. .+....|.+.+.+-.|+| +|.-|+++++||.|++|.- +|-...++.....+|.|++|.|+..=+.-
T Consensus 91 ~k-~~rV-E~sv~AH~~A~~~gRW~~-----dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~ 162 (737)
T KOG1524|consen 91 NK-SARV-ERSISAHAAAISSGRWSP-----DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVF 162 (737)
T ss_pred cc-cchh-hhhhhhhhhhhhhcccCC-----CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEE
Confidence 74 3333 336889999999999999 9999999999999999983 44444444456788999999998822223
Q ss_pred eCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC
Q 012799 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (456)
Q Consensus 258 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (456)
+..+.+.|=.+.....+-..+.|.+-|.++.|++. .+.+++|++
T Consensus 163 c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~------------------------------------s~lI~sgGE 206 (737)
T KOG1524|consen 163 CQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQ------------------------------------SNIIASGGE 206 (737)
T ss_pred ecCCeEEEeecccccceeEEeccCcEEEEeecCcc------------------------------------ccceeecCC
Confidence 34456777777776677778889999999999998 566999999
Q ss_pred CCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeec
Q 012799 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR 417 (456)
Q Consensus 338 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 417 (456)
|-..++||. . ......-..|+.+|++++|.|+ +.++.++. +++++ -+...+.|..+
T Consensus 207 D~kfKvWD~-~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~-----------~~p~~GSifnl--------- 262 (737)
T KOG1524|consen 207 DFRFKIWDA-Q-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF-----------SSPRVGSIFNL--------- 262 (737)
T ss_pred ceeEEeecc-c-CcccccCChhccceeeeeeccc-cceeeeee-eeeee-----------cCCCccceEEE---------
Confidence 999999993 2 3455566789999999999999 55666653 33441 12345677778
Q ss_pred CCCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799 418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i 455 (456)
+||+||..++.|...|.+.+
T Consensus 263 ------------------sWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 263 ------------------SWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ------------------EEcCCCceeeccccCceEEE
Confidence 99999999999999988753
No 187
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=5.2e-18 Score=156.39 Aligned_cols=281 Identities=21% Similarity=0.247 Sum_probs=200.6
Q ss_pred cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC----CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT----QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (456)
Q Consensus 105 ~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 180 (456)
..|...++|.++||+++++|+|..||.|.+|.--. ......+.-|...|.+++|+++|.+|++||..|.+.+|.+.
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 45778899999999999999999999999996432 12345667799999999999999999999999999999999
Q ss_pred CCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC-----------cCccEEEEEeC
Q 012799 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG-----------HTLAVTCVKWG 249 (456)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~v~~~~~~ 249 (456)
+++. +.+..-.++|..+.++| +++..+....|..|.+....+.....++.+ ..+-.+.++++
T Consensus 282 T~~k--qfLPRLgs~I~~i~vS~-----ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id 354 (792)
T KOG1963|consen 282 TGKK--QFLPRLGSPILHIVVSP-----DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID 354 (792)
T ss_pred CCCc--ccccccCCeeEEEEEcC-----CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEc
Confidence 9984 36788889999999999 999999999999999998765544333322 23446778888
Q ss_pred C-CCeEEEEeCCCcEEEEECCCCeEEEEeec-----CC------cceEEEEecCcceeeeccccCCCCccCChHHHHHHH
Q 012799 250 G-DGVIYTGSQDCTIKVWETTQGKLIRELKG-----HG------HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA 317 (456)
Q Consensus 250 ~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (456)
| .+.++-.+..|.|.+||+-+.+.+..+.. +. ..++.++.+..
T Consensus 355 pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~------------------------- 409 (792)
T KOG1963|consen 355 PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRF------------------------- 409 (792)
T ss_pred CCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhcc-------------------------
Confidence 8 34788889999999999998877766532 11 11222222222
Q ss_pred HhhhhhccCCCCCEEEEEe--------CC--CcEEEEecCCCCCC----ccccccccccEeEEEECC-C-CCEEEEEECC
Q 012799 318 LERYNKIKGNAPERLVSGS--------DD--FTMFLWEPAVSKQP----KTRMTGHQQLVNHVYFSP-D-GQWVASASFD 381 (456)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~--------~d--g~i~iwd~~~~~~~----~~~~~~~~~~v~~~~~sp-~-~~~l~s~~~d 381 (456)
+.+++|.- .| -.+++|-.....+- ......|...+...++.+ . ....++++.|
T Consensus 410 -----------gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~d 478 (792)
T KOG1963|consen 410 -----------GSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVD 478 (792)
T ss_pred -----------ceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccC
Confidence 23333331 22 35788874433321 122346777666665554 2 3379999999
Q ss_pred CcEEEEeCCCCeEE----------EEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCC
Q 012799 382 KSIKLWNGTTGKFV----------AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS 451 (456)
Q Consensus 382 g~i~iwd~~~~~~~----------~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg 451 (456)
|.++||-+.+.+.+ ..-.-|..+++.+ +|+.|| .+++.|.|+
T Consensus 479 g~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~---------------------------~fs~dG-slla~s~~~ 530 (792)
T KOG1963|consen 479 GDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITAL---------------------------CFSQDG-SLLAVSFDD 530 (792)
T ss_pred CeEEEEEEecccccCcCccceEEeeeeccccCcccch---------------------------hhcCCC-cEEEEecCC
Confidence 99999987432221 1111245556665 899999 556677888
Q ss_pred ceEEC
Q 012799 452 TLKVT 456 (456)
Q Consensus 452 ~v~iW 456 (456)
+|.||
T Consensus 531 ~Itiw 535 (792)
T KOG1963|consen 531 TITIW 535 (792)
T ss_pred EEEEe
Confidence 99998
No 188
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=4.9e-20 Score=161.27 Aligned_cols=245 Identities=20% Similarity=0.261 Sum_probs=177.7
Q ss_pred eEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC-------ccccccCcccceEEEEecccccCCCCCEEEEE
Q 012799 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP-------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216 (456)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 216 (456)
.++..|...|+.++|.|-...|++++.||.+.+|+++.... ....+.+|.++|.++++.+ ++..+++|
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-----n~~~~ysg 362 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-----NGEHCYSG 362 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-----CceEEEee
Confidence 35667899999999999999999999999999999943211 1124789999999999988 89999999
Q ss_pred eCCCcEEEEECCCC----------eEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCC--cc
Q 012799 217 SKDGDARIWDVSLR----------KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHG--HW 283 (456)
Q Consensus 217 ~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~ 283 (456)
+-||+|+.|++... .....+.||...++.+++++.. .|++++.||+++.|+.....+ .++.... ..
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence 99999999966421 2234567999999999999877 999999999999999876655 3332211 11
Q ss_pred eEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcc------ccc
Q 012799 284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT------RMT 357 (456)
Q Consensus 284 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~------~~~ 357 (456)
-.++.+-... ....++...-+.-.+++......... ...
T Consensus 442 Plsvd~~ss~-----------------------------------~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~ 486 (577)
T KOG0642|consen 442 PLSVDRTSSR-----------------------------------PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGP 486 (577)
T ss_pred cceEeeccch-----------------------------------hHhhhhhcccccccchhhhhhhheeeccccCCCcc
Confidence 2222221110 00011111111111111111111000 001
Q ss_pred cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeE
Q 012799 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW 437 (456)
Q Consensus 358 ~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (456)
.....+..+.++|.+.+.+++..|+.|+++|..+++++.....|...++++ ++
T Consensus 487 ~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtsl---------------------------ai 539 (577)
T KOG0642|consen 487 RRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSL---------------------------AI 539 (577)
T ss_pred cccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecce---------------------------ee
Confidence 112347778899999999999999999999999999999999999999999 88
Q ss_pred ecCCCeEEEeeCCCceEEC
Q 012799 438 SADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 438 s~dg~~l~s~s~Dg~v~iW 456 (456)
.|+|-+|++++.||.+++|
T Consensus 540 ~~ng~~l~s~s~d~sv~l~ 558 (577)
T KOG0642|consen 540 DPNGPYLMSGSHDGSVRLW 558 (577)
T ss_pred cCCCceEEeecCCceeehh
Confidence 9999999999999999998
No 189
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=1.5e-18 Score=145.56 Aligned_cols=208 Identities=22% Similarity=0.371 Sum_probs=162.5
Q ss_pred EEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCc------cccccCcccceEEEEecccccCCCCCEEEEEe
Q 012799 145 KCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGKPS------GNPLSGHKKWITGISWEPVHLNAPCRRFVSAS 217 (456)
Q Consensus 145 ~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~ 217 (456)
...+|.++|..++|+| +...||+|+.|.+|.||++-.+... ...+.+|...|--+.|+|.. .+.|++++
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA----~NVLlsag 151 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA----PNVLLSAG 151 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc----hhhHhhcc
Confidence 3458999999999999 6778999999999999998765432 23578999999999999964 45899999
Q ss_pred CCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcc-eEEEEecCccee
Q 012799 218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHW-VNSLALSTEYAL 295 (456)
Q Consensus 218 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~~~~~~~~~~ 295 (456)
.|.+|.+||+.+++.+.++. |...|.++.|+.+| .+++.+.|..|++||.++++.+..-..|.+. -....|-.+
T Consensus 152 ~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~--- 227 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLAS--- 227 (472)
T ss_pred CCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEecc---
Confidence 99999999999999998887 99999999999999 9999999999999999999999887666542 222223322
Q ss_pred eeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEE---eCCCcEEEEecCCCCCCcccc-ccccccEeEEEECCC
Q 012799 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG---SDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPD 371 (456)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~sp~ 371 (456)
+..+-+| ..+..+.+||..+-..+.... ....+.|.---|.+|
T Consensus 228 ---------------------------------g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~d 274 (472)
T KOG0303|consen 228 ---------------------------------GKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPD 274 (472)
T ss_pred ---------------------------------CceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCC
Confidence 3323333 346789999977655553322 123345666678898
Q ss_pred CCEEEE-EECCCcEEEEeCCCCe
Q 012799 372 GQWVAS-ASFDKSIKLWNGTTGK 393 (456)
Q Consensus 372 ~~~l~s-~~~dg~i~iwd~~~~~ 393 (456)
.++++. |-.|+.|+-|.+....
T Consensus 275 t~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 275 TSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred CCEEEEEecCCcceEEEEecCCC
Confidence 888665 5579999999987654
No 190
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.83 E-value=1.4e-17 Score=149.96 Aligned_cols=264 Identities=12% Similarity=0.146 Sum_probs=168.6
Q ss_pred EEEEECCCcEEEEeCCC-Cc--ceeEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCC-CCCccccccCcccceE
Q 012799 123 LASGSGDTTVRLWDLNT-QT--PMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQT-GKPSGNPLSGHKKWIT 197 (456)
Q Consensus 123 l~~~~~d~~v~vwd~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~-~~~~~~~~~~~~~~v~ 197 (456)
+++...++.|.+|++.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|+++. +...............
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 33446789999999964 32 334443 446678899999999987765 478899999873 3321111111223456
Q ss_pred EEEecccccCCCCCEEEEEeC-CCcEEEEECCCC----eEEEEecCcCccEEEEEeCCCC-eEE-EEeCCCcEEEEECCC
Q 012799 198 GISWEPVHLNAPCRRFVSASK-DGDARIWDVSLR----KCVICLSGHTLAVTCVKWGGDG-VIY-TGSQDCTIKVWETTQ 270 (456)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~dg~i~iwd~~~ 270 (456)
.+.++| +++.+++++. ++.|.+|++.+. +.+..+. +.....+++++|++ .++ +...++.|.+||+.+
T Consensus 84 ~i~~~~-----~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 84 HISTDH-----QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred EEEECC-----CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 788888 8888887764 889999999642 2222222 23346778899998 554 455679999999976
Q ss_pred CeEEEE-----ee-cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC-CCcEEE
Q 012799 271 GKLIRE-----LK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD-DFTMFL 343 (456)
Q Consensus 271 ~~~~~~-----~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i 343 (456)
...+.. .. ........+.++|+ +++++++.. ++.|.+
T Consensus 158 ~g~l~~~~~~~~~~~~g~~p~~~~~~pd------------------------------------g~~lyv~~~~~~~v~v 201 (330)
T PRK11028 158 DGHLVAQEPAEVTTVEGAGPRHMVFHPN------------------------------------QQYAYCVNELNSSVDV 201 (330)
T ss_pred CCcccccCCCceecCCCCCCceEEECCC------------------------------------CCEEEEEecCCCEEEE
Confidence 332211 11 12334566788877 555766665 899999
Q ss_pred EecCCCC-C--Ccccccc------ccccEeEEEECCCCCEEEEEE-CCCcEEEEeCCCCeEEEEEecccc---cEEEEEe
Q 012799 344 WEPAVSK-Q--PKTRMTG------HQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVFRGHVG---PVYQIRF 410 (456)
Q Consensus 344 wd~~~~~-~--~~~~~~~------~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~---~v~~i~~ 410 (456)
||+.... . ....+.. +......+.++|+|++|+++. .++.|.+|++........+.++.. ....+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~-- 279 (330)
T PRK11028 202 WQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGF-- 279 (330)
T ss_pred EEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCce--
Confidence 9986421 1 1111111 122344689999999988875 478999999865322112222211 11223
Q ss_pred eeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC-CCceEEC
Q 012799 411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DSTLKVT 456 (456)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~-Dg~v~iW 456 (456)
.++|||++|+++.. +++|.+|
T Consensus 280 -------------------------~~~~dg~~l~va~~~~~~v~v~ 301 (330)
T PRK11028 280 -------------------------NIDHSGKYLIAAGQKSHHISVY 301 (330)
T ss_pred -------------------------EECCCCCEEEEEEccCCcEEEE
Confidence 88999999998775 8899886
No 191
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.7e-19 Score=157.38 Aligned_cols=164 Identities=23% Similarity=0.406 Sum_probs=133.6
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEE-ecCCCCEEEEEEcC--CCCEEEEEeCCCeEEEE
Q 012799 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-TGHKNWVLCIAWSA--DGKHLVSGSKAGELQCW 177 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vw 177 (456)
.++|.||++.|+|++|+.+|.+|++|+.|-.+.|||.-..+++..+ .+|...|.++.|-| +.+.+++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 4678999999999999999999999999999999999887777766 48999999999999 56788999999999999
Q ss_pred eCCCCC---------CccccccCcccceEEEEecccccCCCC-CEEEEEeCCCcEEEEECCCCeEE----------EEec
Q 012799 178 DPQTGK---------PSGNPLSGHKKWITGISWEPVHLNAPC-RRFVSASKDGDARIWDVSLRKCV----------ICLS 237 (456)
Q Consensus 178 d~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~----------~~~~ 237 (456)
|+...+ ........|...|..++-.| ++ ..|.++++||+|+-+|++..... ..+.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p-----~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAP-----NGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCC-----CCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 998522 22224566888888888777 44 78999999999999999863211 1111
Q ss_pred CcCccEEEEEeCCCC--eEEEEeCCCcEEEEECC
Q 012799 238 GHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETT 269 (456)
Q Consensus 238 ~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~ 269 (456)
..--...|+..+|.. +|++|+.|-..++||.+
T Consensus 198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 222456789999977 89999999999999965
No 192
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=6.7e-18 Score=143.12 Aligned_cols=194 Identities=19% Similarity=0.293 Sum_probs=143.4
Q ss_pred EEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEE
Q 012799 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIR 275 (456)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~ 275 (456)
..++|+. +|..+++++.||.+|+|+..+...+.....|...|.++.|+||| .|++.+.| ..++|+.+++..+.
T Consensus 148 k~vaf~~-----~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNG-----DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA 221 (398)
T ss_pred eEEEEcC-----CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh
Confidence 5677776 89999999999999999998888888888999999999999999 88888888 89999999996665
Q ss_pred Eeec--CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEE-eCCCcEEEEecCCCCC-
Q 012799 276 ELKG--HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG-SDDFTMFLWEPAVSKQ- 351 (456)
Q Consensus 276 ~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~- 351 (456)
.... .......+.|+.+. .. +.-++++. ..-+.|+.||+.....
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~-----------~~---------------------~~l~laa~~~~~~~v~~~~~~~w~~~ 269 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDN-----------AQ---------------------ETLRLAASQFPGGGVRLCDISLWSGS 269 (398)
T ss_pred hcCCcccchhhhhceecccC-----------CC---------------------ceEEEEEecCCCCceeEEEeeeeccc
Confidence 5432 11122333333331 00 01123332 2334555555433222
Q ss_pred ---CccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEE-ecccccEEEEEeeeeeeecCCCCceeeec
Q 012799 352 ---PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF-RGHVGPVYQIRFELIYCFRYPSNFYCVVD 427 (456)
Q Consensus 352 ---~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~~~~~~~~~~ 427 (456)
...+.......|+++++|++|+++|.|+.||.|-|++..+.+.++.. +.|...|+.+
T Consensus 270 ~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~l------------------- 330 (398)
T KOG0771|consen 270 NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGL------------------- 330 (398)
T ss_pred cccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeE-------------------
Confidence 22223333457999999999999999999999999999998887654 5899999999
Q ss_pred ccccccceeEecCCCeEEEeeCCCceEE
Q 012799 428 MSCCMSLYSWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 428 ~~~~~~~~~~s~dg~~l~s~s~Dg~v~i 455 (456)
.|+||.+++++.+.|....|
T Consensus 331 --------tF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 331 --------TFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred --------EEcCCcCcccccccCCceeE
Confidence 89999999999888877654
No 193
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.81 E-value=6e-17 Score=135.01 Aligned_cols=230 Identities=17% Similarity=0.244 Sum_probs=171.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC--cEEEEEC
Q 012799 150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG--DARIWDV 227 (456)
Q Consensus 150 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~ 227 (456)
...+..+.|+.+...|..|+.|| .++|+.+...... ........|..+-|+. .+++..+.+. .++++++
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~-~~~~~~~~IvEmLFSS-------SLvaiV~~~qpr~Lkv~~~ 75 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF-SKDTEGVSIVEMLFSS-------SLVAIVSIKQPRKLKVVHF 75 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh-cccCCCeEEEEeeccc-------ceeEEEecCCCceEEEEEc
Confidence 34567777999999999999998 5777776544322 1222334466666654 5666665544 4999999
Q ss_pred CCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecC---CcceEEEEecCcceeeeccccCCC
Q 012799 228 SLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGH---GHWVNSLALSTEYALRTGAFDHTG 304 (456)
Q Consensus 228 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~ 304 (456)
+.+..+..+. ...+|.++.++.+ +|+++-.+. |+|||+++.+.+.++... ...+.++++++.+
T Consensus 76 Kk~~~ICe~~-fpt~IL~VrmNr~-RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n----------- 141 (391)
T KOG2110|consen 76 KKKTTICEIF-FPTSILAVRMNRK-RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN----------- 141 (391)
T ss_pred ccCceEEEEe-cCCceEEEEEccc-eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCC-----------
Confidence 8888777765 5678999999877 455554444 999999999999888643 3335555555442
Q ss_pred CccCChHHHHHHHHhhhhhccCCCCCEEEE--EeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCC
Q 012799 305 KQYSSPEEMKKAALERYNKIKGNAPERLVS--GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382 (456)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg 382 (456)
.+++. ....|.|.+||..+- .+...+..|++.+.+++|+++|.+|||+++.|
T Consensus 142 -------------------------~ylAyp~s~t~GdV~l~d~~nl-~~v~~I~aH~~~lAalafs~~G~llATASeKG 195 (391)
T KOG2110|consen 142 -------------------------CYLAYPGSTTSGDVVLFDTINL-QPVNTINAHKGPLAALAFSPDGTLLATASEKG 195 (391)
T ss_pred -------------------------ceEEecCCCCCceEEEEEcccc-eeeeEEEecCCceeEEEECCCCCEEEEeccCc
Confidence 23443 234789999996544 45666789999999999999999999999999
Q ss_pred c-EEEEeCCCCeEEEEEecccc--cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799 383 S-IKLWNGTTGKFVAVFRGHVG--PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 383 ~-i~iwd~~~~~~~~~~~~~~~--~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i 455 (456)
+ |||+.+.+|+.+..|+.... .|.++ +|+||+++|++.|..++|.|
T Consensus 196 TVIRVf~v~~G~kl~eFRRG~~~~~IySL---------------------------~Fs~ds~~L~~sS~TeTVHi 244 (391)
T KOG2110|consen 196 TVIRVFSVPEGQKLYEFRRGTYPVSIYSL---------------------------SFSPDSQFLAASSNTETVHI 244 (391)
T ss_pred eEEEEEEcCCccEeeeeeCCceeeEEEEE---------------------------EECCCCCeEEEecCCCeEEE
Confidence 6 89999999999999985544 45556 89999999999999999987
No 194
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.79 E-value=2.4e-19 Score=153.33 Aligned_cols=212 Identities=18% Similarity=0.311 Sum_probs=172.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC
Q 012799 149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228 (456)
Q Consensus 149 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 228 (456)
..-..+.+.++.+|++++.|+..|.+..+|+.+++.... ..-...|.++.|.. +.++||++ ...-++|||-
T Consensus 128 ~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E--i~v~Etv~Dv~~LH-----neq~~AVA-QK~y~yvYD~- 198 (545)
T KOG1272|consen 128 PEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE--INVMETVRDVTFLH-----NEQFFAVA-QKKYVYVYDN- 198 (545)
T ss_pred cccCCeeeeecCCccEEEecCCccceeeeecccceeeee--eehhhhhhhhhhhc-----chHHHHhh-hhceEEEecC-
Confidence 345567899999999999999999999999999987642 22345678888876 55566555 4578999994
Q ss_pred CCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCcc
Q 012799 229 LRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQY 307 (456)
Q Consensus 229 ~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 307 (456)
.|..+..++.| ..|..+.|.|.. .|++++..|.++.-|+.+|+.+..+....+.+..+.-+|-..
T Consensus 199 ~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na------------- 264 (545)
T KOG1272|consen 199 NGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA------------- 264 (545)
T ss_pred CCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc-------------
Confidence 56667777644 568899999998 788888999999999999999999988888888888888743
Q ss_pred CChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEE
Q 012799 308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387 (456)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw 387 (456)
.+-+|...|+|.+|... ...++.++..|.++|.++++.++|+|+||.+.|..++||
T Consensus 265 -----------------------Vih~GhsnGtVSlWSP~-skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIW 320 (545)
T KOG1272|consen 265 -----------------------VIHLGHSNGTVSLWSPN-SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIW 320 (545)
T ss_pred -----------------------eEEEcCCCceEEecCCC-CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEe
Confidence 38899999999999954 456677788999999999999999999999999999999
Q ss_pred eCCCCeEEEEEecccccEEEE
Q 012799 388 NGTTGKFVAVFRGHVGPVYQI 408 (456)
Q Consensus 388 d~~~~~~~~~~~~~~~~v~~i 408 (456)
|++....+.++.. .-+...+
T Consensus 321 DlR~~~ql~t~~t-p~~a~~l 340 (545)
T KOG1272|consen 321 DLRNFYQLHTYRT-PHPASNL 340 (545)
T ss_pred eeccccccceeec-CCCcccc
Confidence 9998877666654 2344444
No 195
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.79 E-value=2.5e-17 Score=134.63 Aligned_cols=233 Identities=19% Similarity=0.298 Sum_probs=178.7
Q ss_pred CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc---ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 012799 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT---PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (456)
Q Consensus 107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 183 (456)
-.++|+|.+|++|+..+|.+.....|.||.....+ ..+++..|...|+++.|+|..+.|++|+.|..-.+|....+.
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 46789999999999999999999999999987654 567888999999999999999999999999999999984443
Q ss_pred Cc--cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEE----EEecCcCccEEEEEeCCCC-eEEE
Q 012799 184 PS--GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV----ICLSGHTLAVTCVKWGGDG-VIYT 256 (456)
Q Consensus 184 ~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~-~l~~ 256 (456)
.- ...+..+....+++.|+| .++.|++|+....|.+|-++...-- ..-+.+...|++++|+|++ .+++
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP-----~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSP-----KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred eeccceeEEEeccceeeEeecC-----cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence 21 114567889999999999 8899999999999999987654322 1224567889999999999 8899
Q ss_pred EeCCCcEEEEECC-----C-------------CeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHH
Q 012799 257 GSQDCTIKVWETT-----Q-------------GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (456)
Q Consensus 257 ~~~dg~i~iwd~~-----~-------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (456)
|+.|+..++|..- + |+++.++....+.+..+.|+|.
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s-------------------------- 217 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS-------------------------- 217 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC--------------------------
Confidence 9999999998641 1 2223334345567777777776
Q ss_pred hhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECC
Q 012799 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381 (456)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d 381 (456)
++.|+-.+.|..+.+-|.....+.........-+..++.|-.+.. ++.++.|
T Consensus 218 ----------G~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 218 ----------GNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred ----------CCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCc-eeecCCC
Confidence 777999999999999996665544443333346677777765443 4444444
No 196
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=9e-18 Score=155.68 Aligned_cols=228 Identities=21% Similarity=0.209 Sum_probs=157.2
Q ss_pred CCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCCCccccccCcccceEEEEecccc
Q 012799 129 DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205 (456)
Q Consensus 129 d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 205 (456)
+..|++||.+... ...+..|...+..++|+|||+.|+.++.+ ..|.+||+.+++... +....+....++|+|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~--l~~~~g~~~~~~wSP-- 257 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV--VASFRGHNGAPAFSP-- 257 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE--EecCCCccCceeECC--
Confidence 4689999987554 55667788899999999999999987654 369999998876432 122222344688999
Q ss_pred cCCCCCEEEEEe-CCCcEEEE--ECCCCeEEEEecCcCccEEEEEeCCCC-eEE-EEeCCCcEEEEECCCC-eEEEEeec
Q 012799 206 LNAPCRRFVSAS-KDGDARIW--DVSLRKCVICLSGHTLAVTCVKWGGDG-VIY-TGSQDCTIKVWETTQG-KLIRELKG 279 (456)
Q Consensus 206 ~~~~~~~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~dg~i~iwd~~~~-~~~~~~~~ 279 (456)
+|+.|+.++ .+|.+.|| |+.++. ...+..+...+....|+|+| .++ ++..+|...+|++... .....+ .
T Consensus 258 ---DG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~ 332 (429)
T PRK01742 258 ---DGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G 332 (429)
T ss_pred ---CCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c
Confidence 999888765 57765555 665555 34455666778899999999 455 4446788888876432 222222 2
Q ss_pred CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc
Q 012799 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH 359 (456)
Q Consensus 280 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 359 (456)
+.. ....|+|+ ++.++..+.++ +.+||+..+..... ...+
T Consensus 333 ~~~--~~~~~SpD------------------------------------G~~ia~~~~~~-i~~~Dl~~g~~~~l-t~~~ 372 (429)
T PRK01742 333 GRG--YSAQISAD------------------------------------GKTLVMINGDN-VVKQDLTSGSTEVL-SSTF 372 (429)
T ss_pred CCC--CCccCCCC------------------------------------CCEEEEEcCCC-EEEEECCCCCeEEe-cCCC
Confidence 222 34566666 56677776654 56689766543221 1121
Q ss_pred cccEeEEEECCCCCEEEEEECCCcEEEEeC--CCCeEEEEEecccccEEEE
Q 012799 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNG--TTGKFVAVFRGHVGPVYQI 408 (456)
Q Consensus 360 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~i 408 (456)
....+.|+|||++|++++.+|...+|++ .+|+.+..+..|.+.+..+
T Consensus 373 --~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p 421 (429)
T PRK01742 373 --LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFP 421 (429)
T ss_pred --CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCc
Confidence 2356789999999999999998888875 3588888888888888777
No 197
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=6.2e-18 Score=143.34 Aligned_cols=207 Identities=22% Similarity=0.322 Sum_probs=146.2
Q ss_pred EEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccc-c
Q 012799 112 LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL-S 190 (456)
Q Consensus 112 ~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~ 190 (456)
.+++|+++|..|++|+.||++|||+..+...+.....|...|.++.|+|||++|++.+.| ..+||+.+++..+.... .
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999998888888888899999999999999999999999 89999999996554322 1
Q ss_pred CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCC
Q 012799 191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQ 270 (456)
Q Consensus 191 ~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~ 270 (456)
..+.....+.|.. ++ .. -.+++.... .|.+.+.. ..+.+|+-..
T Consensus 227 ~k~~~~~~cRF~~-----d~------~~-~~l~laa~~--------------------~~~~~v~~----~~~~~w~~~~ 270 (398)
T KOG0771|consen 227 SKDEMFSSCRFSV-----DN------AQ-ETLRLAASQ--------------------FPGGGVRL----CDISLWSGSN 270 (398)
T ss_pred ccchhhhhceecc-----cC------CC-ceEEEEEec--------------------CCCCceeE----EEeeeecccc
Confidence 1222233333333 11 00 112221110 00001110 1133444321
Q ss_pred CeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC
Q 012799 271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK 350 (456)
Q Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 350 (456)
--..++.......|.+++++++ +++++.|+.||.|.+++...-+
T Consensus 271 ~l~~~~~~~~~~siSsl~VS~d------------------------------------Gkf~AlGT~dGsVai~~~~~lq 314 (398)
T KOG0771|consen 271 FLRLRKKIKRFKSISSLAVSDD------------------------------------GKFLALGTMDGSVAIYDAKSLQ 314 (398)
T ss_pred ccchhhhhhccCcceeEEEcCC------------------------------------CcEEEEeccCCcEEEEEeceee
Confidence 1111111123346899999988 6679999999999999987766
Q ss_pred CCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCC
Q 012799 351 QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391 (456)
Q Consensus 351 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 391 (456)
........|...|+.+.|+||.+++++.+.|....+..+.-
T Consensus 315 ~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 315 RLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 66666788999999999999999999999998888887653
No 198
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=6.5e-17 Score=127.17 Aligned_cols=209 Identities=17% Similarity=0.273 Sum_probs=151.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------CCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcE
Q 012799 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQT---------GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222 (456)
Q Consensus 152 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i 222 (456)
.|.+-+|+|.+++|++|..+|.|.+..+++ ++.......+|.++++.++|.. .+|++|+. |.|
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d-------~~Lls~gd-G~V 83 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD-------DFLLSGGD-GLV 83 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh-------hheeeccC-ceE
Confidence 355668899999999999999999998864 2222234578999999999975 45666655 999
Q ss_pred EEEECCCCeE------EEEe--cC-----cCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEE
Q 012799 223 RIWDVSLRKC------VICL--SG-----HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA 288 (456)
Q Consensus 223 ~iwd~~~~~~------~~~~--~~-----~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 288 (456)
+-|..+.... +... .- .-..|+++-..|.. .++.++.|+.++.||+++|+..+++++|.+.+.++.
T Consensus 84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv 163 (325)
T KOG0649|consen 84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVV 163 (325)
T ss_pred EEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeee
Confidence 9997653221 1111 11 12458889999865 666677999999999999999999999999999998
Q ss_pred ecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcc--------ccccc-
Q 012799 289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT--------RMTGH- 359 (456)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------~~~~~- 359 (456)
.... ...+++|++||++++||.++.+.... .+..|
T Consensus 164 ~R~~------------------------------------~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~ 207 (325)
T KOG0649|consen 164 GRNA------------------------------------NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW 207 (325)
T ss_pred eccc------------------------------------CcceeecCCCccEEEEeccccceeEEeccccChhhcCccc
Confidence 7433 33499999999999999887653221 11222
Q ss_pred cccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408 (456)
Q Consensus 360 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 408 (456)
...|-+++. +..+|+.|+ .-.+.+|++++.+...++. -..++..+
T Consensus 208 g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfp-ipa~v~~v 252 (325)
T KOG0649|consen 208 GKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFP-IPARVHLV 252 (325)
T ss_pred CceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEe-cccceeEe
Confidence 235666666 456888775 4569999999988877765 33455555
No 199
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=4.7e-16 Score=129.74 Aligned_cols=236 Identities=14% Similarity=0.179 Sum_probs=178.6
Q ss_pred cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCCCc
Q 012799 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA--GELQCWDPQTGKPS 185 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~ 185 (456)
...+..+.|+.+...|..|+.|| -++|+.+..............|.-+-|+ ..++|..+.+ +.+++++.+.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence 45677788999999999999998 7888877655433333333445566665 4466665554 35999999888776
Q ss_pred cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC---cCccEEEEEeCCCC-eEEE--EeC
Q 012799 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG---HTLAVTCVKWGGDG-VIYT--GSQ 259 (456)
Q Consensus 186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~-~l~~--~~~ 259 (456)
+... ....|.++.+.. ++|+++-.+. |+|||++..+.+.++.. +...+.++..++.+ +++. ...
T Consensus 82 Ce~~--fpt~IL~VrmNr-------~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t 151 (391)
T KOG2110|consen 82 CEIF--FPTSILAVRMNR-------KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT 151 (391)
T ss_pred EEEe--cCCceEEEEEcc-------ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC
Confidence 6433 356688888854 6777777654 99999999999988753 34456666666665 5554 334
Q ss_pred CCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC
Q 012799 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339 (456)
Q Consensus 260 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 339 (456)
.|.|.+||..+-+.+..+..|.+.+.+++|+++ |.+++++++.|
T Consensus 152 ~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~------------------------------------G~llATASeKG 195 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTINAHKGPLAALAFSPD------------------------------------GTLLATASEKG 195 (391)
T ss_pred CceEEEEEcccceeeeEEEecCCceeEEEECCC------------------------------------CCEEEEeccCc
Confidence 689999999999999999999999999999998 66699999999
Q ss_pred c-EEEEecCCCCCCccccccc-cccEeEEEECCCCCEEEEEECCCcEEEEeCCCC
Q 012799 340 T-MFLWEPAVSKQPKTRMTGH-QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG 392 (456)
Q Consensus 340 ~-i~iwd~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 392 (456)
+ ||+|.+..++.....-+|- ...|.+++|+|++++|++.+..++|++|.+...
T Consensus 196 TVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 196 TVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred eEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 7 6899987766544433332 345889999999999999999999999998753
No 200
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=8.2e-17 Score=135.14 Aligned_cols=243 Identities=13% Similarity=0.157 Sum_probs=181.7
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC------CCCccccccCcccceEEEEecccccCCCCCEEEEEeC
Q 012799 145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT------GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK 218 (456)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~ 218 (456)
.+.+|.+.|.++.|+.++++|++|+.|..+++|+++. .+++...-..|...|.+++|.. ....+++|+.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-----~N~~~~SG~~ 125 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-----ENRFLYSGER 125 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-----CCeeEecCCC
Confidence 3458999999999999999999999999999999863 3444434456778999999987 7788999999
Q ss_pred CCcEEEEECCCCeEEEEecC--cCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCe-EEEE--eecCCcceEEEEecCc
Q 012799 219 DGDARIWDVSLRKCVICLSG--HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK-LIRE--LKGHGHWVNSLALSTE 292 (456)
Q Consensus 219 dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~--~~~~~~~i~~~~~~~~ 292 (456)
+++|..-|+++.+.+..+.. ..+.|..+..+|.. .|++.+.+|.|.+||.+... .+.. .........++-|+|.
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred cceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 99999999999998887753 23589999999955 99999999999999998754 2221 1223445666777776
Q ss_pred ceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc------cccEeEE
Q 012799 293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH------QQLVNHV 366 (456)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~v~~~ 366 (456)
. +.+|++.+..+-+.+||.+....++....+. ...-.++
T Consensus 206 ~-----------------------------------P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~ 250 (609)
T KOG4227|consen 206 T-----------------------------------PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGS 250 (609)
T ss_pred C-----------------------------------ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhe
Confidence 2 5668999999999999988776554433221 1223567
Q ss_pred EECCCCCEEEEEECCCcEEEEeCCCCeE-EEEEecccc-------cEEEEEeeeeeeecCCCCceeeecccccccceeEe
Q 012799 367 YFSPDGQWVASASFDKSIKLWNGTTGKF-VAVFRGHVG-------PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWS 438 (456)
Q Consensus 367 ~~sp~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~-------~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 438 (456)
.|+|+|+.+.+--....-.+||+.+.++ +..+. |.. .+.++ +|-
T Consensus 251 ~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~---------------------------~F~ 302 (609)
T KOG4227|consen 251 LWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSM---------------------------TFI 302 (609)
T ss_pred eeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeee---------------------------eee
Confidence 8999999988876666777888877554 22332 322 22233 555
Q ss_pred cCCCeEEEeeCCCceEEC
Q 012799 439 ADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 439 ~dg~~l~s~s~Dg~v~iW 456 (456)
.| ..+++|+.+=.|+||
T Consensus 303 ~D-~~v~tGSD~~~i~~W 319 (609)
T KOG4227|consen 303 DD-YTVATGSDHWGIHIW 319 (609)
T ss_pred cc-eeeeccCcccceEEE
Confidence 44 459999999999999
No 201
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.1e-16 Score=144.92 Aligned_cols=280 Identities=19% Similarity=0.228 Sum_probs=196.8
Q ss_pred CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCC---CEEEEEeCCCeEEEEeCCCC
Q 012799 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG---KHLVSGSKAGELQCWDPQTG 182 (456)
Q Consensus 106 ~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~dg~i~vwd~~~~ 182 (456)
|-+..-..-.|++|+++++.... ..|.||...++.++..+.+|..+++.+.+.|.. .++++++.||.|++||...+
T Consensus 14 g~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~ 92 (792)
T KOG1963|consen 14 GRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDG 92 (792)
T ss_pred cccceecccccccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCc
Confidence 33333344578999998887764 489999999999999999999999999999843 47789999999999999988
Q ss_pred CCccccccCcccceEEEEecccccCCCCCEEEEEeC-CC------------cEEEEECCCC--eEEEEecCcCccEEEEE
Q 012799 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DG------------DARIWDVSLR--KCVICLSGHTLAVTCVK 247 (456)
Q Consensus 183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg------------~i~iwd~~~~--~~~~~~~~~~~~v~~~~ 247 (456)
...... ....++..+.+.|.....+ .++..+. |. .++-+.+.+. .....+.++.. -.++.
T Consensus 93 ~Llkt~--~~~~~v~~~~~~~~~a~~s--~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~ 167 (792)
T KOG1963|consen 93 ELLKTF--DNNLPVHALVYKPAQADIS--ANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIV 167 (792)
T ss_pred EEEEEE--ecCCceeEEEechhHhCcc--ceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEE
Confidence 766422 2233444554444322211 2221111 11 1111111110 00011112222 45677
Q ss_pred eCCCCeEEEEeCCCcEEEEECCCCeEEE----EeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhh
Q 012799 248 WGGDGVIYTGSQDCTIKVWETTQGKLIR----ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK 323 (456)
Q Consensus 248 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (456)
.++.|.+.....+..+.+|+........ .-..|...+++.+++|.
T Consensus 168 ~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn------------------------------- 216 (792)
T KOG1963|consen 168 DNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPN------------------------------- 216 (792)
T ss_pred EcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccc-------------------------------
Confidence 8888877777778889999988754111 11235556899999998
Q ss_pred ccCCCCCEEEEEeCCCcEEEEecCC---CCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799 324 IKGNAPERLVSGSDDFTMFLWEPAV---SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG 400 (456)
Q Consensus 324 ~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 400 (456)
++++++|..||.|.+|.--. .......+.-|...|++++|+++|.+|.+|+..|.+.+|.+.+++ .+-+..
T Consensus 217 -----~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPR 290 (792)
T KOG1963|consen 217 -----ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPR 290 (792)
T ss_pred -----cceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccc
Confidence 56699999999999997322 223345567788899999999999999999999999999999988 444556
Q ss_pred ccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799 401 HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 401 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i 455 (456)
-.++|..+ .+|||+.+.+..-.|+.|.+
T Consensus 291 Lgs~I~~i---------------------------~vS~ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 291 LGSPILHI---------------------------VVSPDSDLYSLVLEDNQIHL 318 (792)
T ss_pred cCCeeEEE---------------------------EEcCCCCeEEEEecCceEEE
Confidence 77899999 88999999999999998865
No 202
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=1.9e-15 Score=123.74 Aligned_cols=237 Identities=12% Similarity=0.153 Sum_probs=162.4
Q ss_pred cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEE-EeCC------CeEEEEeCCCC
Q 012799 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVS-GSKA------GELQCWDPQTG 182 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~d------g~i~vwd~~~~ 182 (456)
...+++|+.|..-+++|..+| .+||+.+.-+.......+.+.+.-+..--..++|+. ||.+ ..+.|||=...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 345599999999999998776 999998864443333333333222222223445554 3333 46999994444
Q ss_pred CCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC-CCeEEEEecCcC--ccEEEEEeCCCC-eEEE-E
Q 012799 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-LRKCVICLSGHT--LAVTCVKWGGDG-VIYT-G 257 (456)
Q Consensus 183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~--~~v~~~~~~~~~-~l~~-~ 257 (456)
+++ .......+|.++.+.+ ..+++.-. +.|++|... ..+.++.+.... ....+++-..+. .|+. |
T Consensus 86 ~~i--~el~f~~~I~~V~l~r-------~riVvvl~-~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg 155 (346)
T KOG2111|consen 86 RCI--IELSFNSEIKAVKLRR-------DRIVVVLE-NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPG 155 (346)
T ss_pred cEE--EEEEeccceeeEEEcC-------CeEEEEec-CeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCC
Confidence 443 3445678899999876 56666655 789999987 455555543222 223333322233 3332 5
Q ss_pred eCCCcEEEEECCCCeE--EEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEE
Q 012799 258 SQDCTIKVWETTQGKL--IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (456)
Q Consensus 258 ~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (456)
-.-|.|++-|+...+. ...+..|.+.|.+++++.+ |..++++
T Consensus 156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~------------------------------------Gt~vATa 199 (346)
T KOG2111|consen 156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQ------------------------------------GTLVATA 199 (346)
T ss_pred CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCC------------------------------------ccEEEEe
Confidence 5679999999987655 4778899999999999988 5669999
Q ss_pred eCCCc-EEEEecCCCCCCccccccc-cccEeEEEECCCCCEEEEEECCCcEEEEeCCCCe
Q 012799 336 SDDFT-MFLWEPAVSKQPKTRMTGH-QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK 393 (456)
Q Consensus 336 ~~dg~-i~iwd~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~ 393 (456)
+..|+ |+|||..++......-.|- ...|.+++|||++.+||++|..|+++||.++...
T Consensus 200 StkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 200 STKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred ccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 99997 7999987776554433332 3569999999999999999999999999987643
No 203
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.4e-17 Score=143.56 Aligned_cols=250 Identities=20% Similarity=0.285 Sum_probs=193.7
Q ss_pred eeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcE
Q 012799 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222 (456)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i 222 (456)
...+..|.+.|..+.|+..|..|++|+.|..|.+||+..++.......+|...|....|.|.. +...+++.+.||.+
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s---~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFS---GDRTIVTSSRDGQV 211 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCC---CCcCceeccccCce
Confidence 356778999999999999999999999999999999999998888889999999999999955 67889999999999
Q ss_pred EEEECCCCeE---EEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEee---cCCc---ceEEEEecC
Q 012799 223 RIWDVSLRKC---VICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELK---GHGH---WVNSLALST 291 (456)
Q Consensus 223 ~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~---~i~~~~~~~ 291 (456)
++=.+..... ...+..|.++|..++..|+. .|++++.|+.+.-+|++.+.+...+. .+.. ....++..|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 9887643322 34456799999999999987 89999999999999999876544332 1222 456667666
Q ss_pred cceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC-----ccccc------ccc
Q 012799 292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP-----KTRMT------GHQ 360 (456)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~------~~~ 360 (456)
.. ...+++|+.|..+++||.+.-... +..+. ...
T Consensus 292 ~n-----------------------------------t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~ 336 (559)
T KOG1334|consen 292 RN-----------------------------------TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDP 336 (559)
T ss_pred CC-----------------------------------ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCc
Confidence 52 446899999999999997653321 12222 223
Q ss_pred ccEeEEEECCCCCEEEEEECCCcEEEEeCCC--C----------eEEE-EEecccc--cEEEEEeeeeeeecCCCCceee
Q 012799 361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTT--G----------KFVA-VFRGHVG--PVYQIRFELIYCFRYPSNFYCV 425 (456)
Q Consensus 361 ~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~--~----------~~~~-~~~~~~~--~v~~i~~~~~~~~~~~~~~~~~ 425 (456)
-.|++++|+.++.-|.+.-.|-.|+++.-.- | ..+. .+++|.. .|..+.|
T Consensus 337 v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNF--------------- 401 (559)
T KOG1334|consen 337 VNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNF--------------- 401 (559)
T ss_pred ccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeee---------------
Confidence 4689999998776666667788899995332 3 2233 3778865 5666655
Q ss_pred ecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 426 VDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 426 ~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
|.|...|+++||.=|.|.||
T Consensus 402 -----------fGPrsEyVvSGSDCGhIFiW 421 (559)
T KOG1334|consen 402 -----------FGPRSEYVVSGSDCGHIFIW 421 (559)
T ss_pred -----------ccCccceEEecCccceEEEE
Confidence 89999999999999999999
No 204
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=7.8e-17 Score=151.30 Aligned_cols=245 Identities=18% Similarity=0.292 Sum_probs=177.7
Q ss_pred cccEEEEEECC--CCCeEEEEECCCcEEEEeCC-CC----cceeEEe-------cCCCCEEEEEEcCCCCEEEEEeCCCe
Q 012799 108 TEAVLSVAFSP--DGRQLASGSGDTTVRLWDLN-TQ----TPMFKCT-------GHKNWVLCIAWSADGKHLVSGSKAGE 173 (456)
Q Consensus 108 ~~~V~~~~~s~--~~~~l~~~~~d~~v~vwd~~-~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~dg~ 173 (456)
...|+.+.+-. |..++++|+.||.|+||+-- .+ +.+..+. +..+.-.-+.|.....+|+++|.-..
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeE
Confidence 35788888865 45689999999999999632 21 2222221 11222245678876667777777889
Q ss_pred EEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe---EEEEecCcCcc--EEEEEe
Q 012799 174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVICLSGHTLA--VTCVKW 248 (456)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~--v~~~~~ 248 (456)
|+|||.........+..+....++++.-... .|+.+++|..||.|++||.+... .+...+.|+.. |..+.+
T Consensus 1189 IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~----~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~sl 1264 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSSTLVTALSADLV----HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSL 1264 (1387)
T ss_pred EEEEecccceeEeecccCCCccceeeccccc----CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEe
Confidence 9999999887776666666777777765442 47899999999999999987543 46667788877 999999
Q ss_pred CCCC--eEEEEeCCCcEEEEECCCCeEE--EEeecC---CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhh
Q 012799 249 GGDG--VIYTGSQDCTIKVWETTQGKLI--RELKGH---GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321 (456)
Q Consensus 249 ~~~~--~l~~~~~dg~i~iwd~~~~~~~--~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (456)
.+.| .+++|+.+|.|++||++..... .++..| ++..+++..++.
T Consensus 1265 q~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~h----------------------------- 1315 (1387)
T KOG1517|consen 1265 QRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEH----------------------------- 1315 (1387)
T ss_pred ecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccC-----------------------------
Confidence 9888 7999999999999999984221 122222 235888888887
Q ss_pred hhccCCCCCEEEEEeCCCcEEEEecCCCCCCccc-----cccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCe
Q 012799 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR-----MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK 393 (456)
Q Consensus 322 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~ 393 (456)
...+++|+. +.|.||++........+ +....+.+.|++|+|..-++|+|+.|..|.||.....+
T Consensus 1316 -------apiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1316 -------APIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred -------CCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 344888887 99999996544322211 11234567999999999999999999999999876654
No 205
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=3e-15 Score=134.83 Aligned_cols=239 Identities=13% Similarity=0.201 Sum_probs=156.5
Q ss_pred cccEEEEEECCCCCeEEEEE-CCCcEEEEeCCC-Ccc--eeEEecCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCC
Q 012799 108 TEAVLSVAFSPDGRQLASGS-GDTTVRLWDLNT-QTP--MFKCTGHKNWVLCIAWSADGKHLVSGSK-AGELQCWDPQTG 182 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~-~d~~v~vwd~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~ 182 (456)
.+....++++|++++|++++ .++.|.+|+++. ++. .... ........++|+|+++++++++. ++.|.+|++++.
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 35567899999999887765 578899999873 322 1222 23345678999999999888765 789999999743
Q ss_pred CCccccc--cCcccceEEEEecccccCCCCCEEEEEe-CCCcEEEEECCCCeEEE-------EecCcCccEEEEEeCCCC
Q 012799 183 KPSGNPL--SGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVI-------CLSGHTLAVTCVKWGGDG 252 (456)
Q Consensus 183 ~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~-------~~~~~~~~v~~~~~~~~~ 252 (456)
....... ..+......++++| +++++++++ .++.|.+||+.+...+. ... .......+.|+|++
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~p-----~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg 186 (330)
T PRK11028 113 GIPVAPIQIIEGLEGCHSANIDP-----DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQ 186 (330)
T ss_pred CCCCCceeeccCCCcccEeEeCC-----CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCC
Confidence 2221111 11223456677888 888886555 56899999997633221 111 23345789999999
Q ss_pred -eEEEEeC-CCcEEEEECCC--Ce--EEEEeecCC------cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhh
Q 012799 253 -VIYTGSQ-DCTIKVWETTQ--GK--LIRELKGHG------HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320 (456)
Q Consensus 253 -~l~~~~~-dg~i~iwd~~~--~~--~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (456)
+++++.. ++.|.+||+.. ++ .+..+.... .....+.++|+
T Consensus 187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd---------------------------- 238 (330)
T PRK11028 187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD---------------------------- 238 (330)
T ss_pred CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC----------------------------
Confidence 6666665 89999999973 32 233332111 11224566665
Q ss_pred hhhccCCCCCEEEEEe-CCCcEEEEecCCCCCCccccccc---cccEeEEEECCCCCEEEEEEC-CCcEEEEeCC
Q 012799 321 YNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQPKTRMTGH---QQLVNHVYFSPDGQWVASASF-DKSIKLWNGT 390 (456)
Q Consensus 321 ~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~s~~~-dg~i~iwd~~ 390 (456)
+++++++. .++.|.+|++........ +.++ ......+.++|+|++|+++.. +++|.+|++.
T Consensus 239 --------g~~lyv~~~~~~~I~v~~i~~~~~~~~-~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 239 --------GRHLYACDRTASLISVFSVSEDGSVLS-FEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred --------CCEEEEecCCCCeEEEEEEeCCCCeEE-EeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 55577764 478999999865432221 1122 124567899999999888765 8999999874
No 206
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.75 E-value=5.7e-17 Score=141.43 Aligned_cols=208 Identities=18% Similarity=0.262 Sum_probs=164.5
Q ss_pred CeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEE
Q 012799 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGIS 200 (456)
Q Consensus 121 ~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 200 (456)
..|+.++.||.+.+.+ ..++....+..|.+.+.+-.|+|||.-|++++.||.|++|.-. |- +...+......|.+++
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GM-LRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GM-LRSTVVQNEESIRCAR 152 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-ch-HHHHHhhcCceeEEEE
Confidence 4688888999999987 4577778888999999999999999999999999999999853 33 2224556678899999
Q ss_pred ecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeec
Q 012799 201 WEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKG 279 (456)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~ 279 (456)
|.| +.+.++.+.. +.+.|=.+.....+...+.|.+-|.++.|++.. .+++|+.|-..++||- .|..+..-..
T Consensus 153 W~p-----~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~ 225 (737)
T KOG1524|consen 153 WAP-----NSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAA 225 (737)
T ss_pred ECC-----CCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCCh
Confidence 999 5555544433 567777777777777888999999999999987 9999999999999995 4677777778
Q ss_pred CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc
Q 012799 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH 359 (456)
Q Consensus 280 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 359 (456)
|..+|++++|.|+.. ++.++. .+++ .-...
T Consensus 226 ~ey~ITSva~npd~~-------------------------------------~~v~S~-nt~R------------~~~p~ 255 (737)
T KOG1524|consen 226 EEYAITSVAFNPEKD-------------------------------------YLLWSY-NTAR------------FSSPR 255 (737)
T ss_pred hccceeeeeeccccc-------------------------------------eeeeee-eeee------------ecCCC
Confidence 999999999999832 333332 1222 12234
Q ss_pred cccEeEEEECCCCCEEEEEECCCcEEEEe
Q 012799 360 QQLVNHVYFSPDGQWVASASFDKSIKLWN 388 (456)
Q Consensus 360 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd 388 (456)
.+.|..++||+||..++.|+..|.+.+=.
T Consensus 256 ~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 256 VGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred ccceEEEEEcCCCceeeccccCceEEEee
Confidence 57799999999999999999999776544
No 207
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=1.6e-16 Score=147.44 Aligned_cols=224 Identities=21% Similarity=0.231 Sum_probs=153.9
Q ss_pred ccccccccCCcccEEEEEECCCCCeEEEEECC---CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe-CCCe
Q 012799 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGD---TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGE 173 (456)
Q Consensus 98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d---~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~ 173 (456)
+...+.+..|...+.+.+|+|||+.|+.++.+ ..|++||+.+++... +....+....++|+|||+.|+.++ .+|.
T Consensus 193 g~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~g~ 271 (429)
T PRK01742 193 GFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKDGV 271 (429)
T ss_pred CCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecCCc
Confidence 33456678899999999999999999987654 369999998775422 222233345789999999888764 6786
Q ss_pred EEEE--eCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEe-CCCcEEEEECCCCe-EEEEecCcCccEEEEEeC
Q 012799 174 LQCW--DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRK-CVICLSGHTLAVTCVKWG 249 (456)
Q Consensus 174 i~vw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~ 249 (456)
+.|| |+.++... .+..+...+....|+| +|+.++.++ .+|...+|++.... ....+ .+.. ....|+
T Consensus 272 ~~Iy~~d~~~~~~~--~lt~~~~~~~~~~wSp-----DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~S 341 (429)
T PRK01742 272 LNIYVMGANGGTPS--QLTSGAGNNTEPSWSP-----DGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQIS 341 (429)
T ss_pred EEEEEEECCCCCeE--eeccCCCCcCCEEECC-----CCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCC
Confidence 6555 66655543 3455666788899999 888777655 57888888764321 12222 3333 457899
Q ss_pred CCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCC
Q 012799 250 GDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (456)
Q Consensus 250 ~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (456)
|+| .++.++.++ +.+||+.+++........ ....+.|+|+
T Consensus 342 pDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPd------------------------------------ 382 (429)
T PRK01742 342 ADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPN------------------------------------ 382 (429)
T ss_pred CCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCC------------------------------------
Confidence 999 666666654 666999888654322221 2345667776
Q ss_pred CCEEEEEeCCCcEEEEecC-CCCCCccccccccccEeEEEECCC
Q 012799 329 PERLVSGSDDFTMFLWEPA-VSKQPKTRMTGHQQLVNHVYFSPD 371 (456)
Q Consensus 329 ~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~sp~ 371 (456)
++.+++++.++...+|++. ........+..|.+.+...+|+|-
T Consensus 383 G~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 383 GIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 6679999889988888753 233455566778888899999984
No 208
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.75 E-value=4e-16 Score=127.70 Aligned_cols=220 Identities=23% Similarity=0.316 Sum_probs=171.2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC--ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEE
Q 012799 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP--SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW 225 (456)
Q Consensus 148 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 225 (456)
--..+|+|.+|++|+..+|.+.....|.||.....+. ....+..|...|+.++|.| ..+.|++++.|..-++|
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-----~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-----KSNRIVTCSHDRNAYVW 82 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-----CCCceeEccCCCCcccc
Confidence 3467899999999999999999999999999887662 3346788999999999999 78899999999999999
Q ss_pred ECCC---CeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEE----EEeecCCcceEEEEecCcceeee
Q 012799 226 DVSL---RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLI----RELKGHGHWVNSLALSTEYALRT 297 (456)
Q Consensus 226 d~~~---~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~ 297 (456)
.... .++...+..++...+++.|+|.+ .|++|+.-..|.+|-++..+.- ..-+.+.+.|.++.|+|+..
T Consensus 83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV--- 159 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV--- 159 (361)
T ss_pred ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc---
Confidence 9833 34556667789999999999988 9999999999999877654322 12234567899999999854
Q ss_pred ccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC-----------------CCcccccccc
Q 012799 298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-----------------QPKTRMTGHQ 360 (456)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~~~~~ 360 (456)
.+++|+.|+..++|..--.. ..........
T Consensus 160 ---------------------------------LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~g 206 (361)
T KOG1523|consen 160 ---------------------------------LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSG 206 (361)
T ss_pred ---------------------------------eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCC
Confidence 49999999999998632110 1122223456
Q ss_pred ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCe-EEEEEecccccEEEE
Q 012799 361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK-FVAVFRGHVGPVYQI 408 (456)
Q Consensus 361 ~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i 408 (456)
+.+..+.|+|+|..|+-.+.|+.+.+-|..... .+.......-|..++
T Consensus 207 gwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~ 255 (361)
T KOG1523|consen 207 GWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSV 255 (361)
T ss_pred CceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceee
Confidence 789999999999999999999999999977654 344333333555555
No 209
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=6.9e-16 Score=135.89 Aligned_cols=274 Identities=14% Similarity=0.236 Sum_probs=199.4
Q ss_pred CCcccEEEEEECCCCCeE-EEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 012799 106 GHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP 184 (456)
Q Consensus 106 ~h~~~V~~~~~s~~~~~l-~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 184 (456)
+|...-+.|..+|||+|+ |+|...-.|++||+.+-.....-.-....|.-.-.+.|-..++.-..|.+|.+...- |..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G~h 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-GRH 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-Cee
Confidence 577788899999999975 567788899999998654433322234455555566666666666778877765432 221
Q ss_pred ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcE
Q 012799 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTI 263 (456)
Q Consensus 185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i 263 (456)
....+ ...-..++++.. +. -|+.++....|+-++++.|..+..+....+.++++..++.. +|++|+.+|.|
T Consensus 128 y~~RI---P~~GRDm~y~~~----sc-Dly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~V 199 (703)
T KOG2321|consen 128 YRTRI---PKFGRDMKYHKP----SC-DLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVV 199 (703)
T ss_pred eeeec---CcCCccccccCC----Cc-cEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceE
Confidence 11011 112234555441 22 35555555779999999999999998888999999999966 88888889999
Q ss_pred EEEECCCCeEEEEeecC------C-----cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE
Q 012799 264 KVWETTQGKLIRELKGH------G-----HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (456)
Q Consensus 264 ~iwd~~~~~~~~~~~~~------~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 332 (456)
..||.+....+.++... . ..|+++.|+.+ +-.+
T Consensus 200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~------------------------------------gL~~ 243 (703)
T KOG2321|consen 200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD------------------------------------GLHV 243 (703)
T ss_pred EEecchhhhhheeeecccccCCCccccccCcceEEEecCC------------------------------------ceeE
Confidence 99999987776665422 1 23777888766 4459
Q ss_pred EEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCC--CCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799 333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD--GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410 (456)
Q Consensus 333 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 410 (456)
++|+.+|.+.|||++...+....-.+..-+|..+.|.+. ++.|++. ....++|||-.+|+....+.. ...++.+
T Consensus 244 aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~-- 319 (703)
T KOG2321|consen 244 AVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP-TSDLNDF-- 319 (703)
T ss_pred EeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc-cCCcCce--
Confidence 999999999999999988877776777788999999875 4445554 467899999999999888874 3447777
Q ss_pred eeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCce
Q 012799 411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL 453 (456)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v 453 (456)
++-|++.++++|-+++.+
T Consensus 320 -------------------------C~~p~sGm~f~Ane~~~m 337 (703)
T KOG2321|consen 320 -------------------------CFVPGSGMFFTANESSKM 337 (703)
T ss_pred -------------------------eeecCCceEEEecCCCcc
Confidence 778999999998877654
No 210
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=2.9e-15 Score=122.71 Aligned_cols=229 Identities=20% Similarity=0.273 Sum_probs=160.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcc--cceEEEEecccccCCCCCEEEE-EeCC------CcE
Q 012799 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK--KWITGISWEPVHLNAPCRRFVS-ASKD------GDA 222 (456)
Q Consensus 152 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~l~~-~~~d------g~i 222 (456)
...+++|+.|...+++|..+| .++|+++--+.... ...+. -.+..+-| ..++++. ||.+ ..+
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~-r~~~~~G~~~veMLf-------R~N~laLVGGg~~pky~pNkv 77 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESAS-RQFIDGGFKIVEMLF-------RSNYLALVGGGSRPKYPPNKV 77 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhh-hccccCchhhhhHhh-------hhceEEEecCCCCCCCCCceE
Confidence 345599999999988887776 89999875433211 11111 12222222 2244443 3332 469
Q ss_pred EEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECC-CCeEEEEeecCC--cceEEEEecCcceeeecc
Q 012799 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT-QGKLIRELKGHG--HWVNSLALSTEYALRTGA 299 (456)
Q Consensus 223 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~ 299 (456)
.|||-...+++..+. ...+|.++.+.++. +++ -..+.|++|... +.+.++.+.... ....+++-..+
T Consensus 78 iIWDD~k~~~i~el~-f~~~I~~V~l~r~r-iVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~------- 147 (346)
T KOG2111|consen 78 IIWDDLKERCIIELS-FNSEIKAVKLRRDR-IVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSN------- 147 (346)
T ss_pred EEEecccCcEEEEEE-eccceeeEEEcCCe-EEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCC-------
Confidence 999977777777775 57899999999884 333 345789999987 445555554322 22223222221
Q ss_pred ccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE-EeCCCcEEEEecCCCCC-CccccccccccEeEEEECCCCCEEEE
Q 012799 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS-GSDDFTMFLWEPAVSKQ-PKTRMTGHQQLVNHVYFSPDGQWVAS 377 (456)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~s 377 (456)
...|+. |..-|.|.+-|+..... ....+.+|.+.|.|++.+-+|.++||
T Consensus 148 -----------------------------k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vAT 198 (346)
T KOG2111|consen 148 -----------------------------KSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVAT 198 (346)
T ss_pred -----------------------------ceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEE
Confidence 122333 44568999999876654 34667899999999999999999999
Q ss_pred EECCCc-EEEEeCCCCeEEEEEecc--cccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceE
Q 012799 378 ASFDKS-IKLWNGTTGKFVAVFRGH--VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLK 454 (456)
Q Consensus 378 ~~~dg~-i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~ 454 (456)
+|..|+ |||||..+|++++.++.. ...|+++ +||||+.+|+.+|+-|+|.
T Consensus 199 aStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i---------------------------aFSp~~s~LavsSdKgTlH 251 (346)
T KOG2111|consen 199 ASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI---------------------------AFSPNSSWLAVSSDKGTLH 251 (346)
T ss_pred eccCcEEEEEEEcCCCcEeeeeecCCchheEEEE---------------------------EeCCCccEEEEEcCCCeEE
Confidence 999996 899999999999998743 3478888 8999999999999999998
Q ss_pred E
Q 012799 455 V 455 (456)
Q Consensus 455 i 455 (456)
|
T Consensus 252 i 252 (346)
T KOG2111|consen 252 I 252 (346)
T ss_pred E
Confidence 7
No 211
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=3.9e-18 Score=156.03 Aligned_cols=235 Identities=24% Similarity=0.342 Sum_probs=181.4
Q ss_pred ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCc
Q 012799 142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221 (456)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~ 221 (456)
.+..+.+|...|+|+.|...|.++++|+.|..++||..+++.+.. ...+|.+.|+.++.+. +..++++++.|..
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA-s~rGhs~ditdlavs~-----~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA-SCRGHSGDITDLAVSS-----NNTMIAAASNDKV 255 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc-cCCCCccccchhccch-----hhhhhhhcccCce
Confidence 344566899999999999999999999999999999999988876 7899999999999877 6678999999999
Q ss_pred EEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEee-----cCCcceEEEEecCcceee
Q 012799 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK-----GHGHWVNSLALSTEYALR 296 (456)
Q Consensus 222 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~ 296 (456)
|++|.+..+.++..+.+|.+.|++++|+|-. +.+.||++++||.+-. +..... ....-+.++.+...
T Consensus 256 IrvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~-~~~y~prp~~~~~~~~~~s~~~~~~---- 327 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLE-PRIYVPRPLKFTEKDLVDSILFENN---- 327 (1113)
T ss_pred EEEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEecccccc-ccccCCCCCCcccccceeeeecccc----
Confidence 9999999999999999999999999999964 7788999999998821 111110 01122222322222
Q ss_pred eccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCC-CEE
Q 012799 297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWV 375 (456)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l 375 (456)
+..+++++.|+.-..|.+.. +..+...+.-+.++.+. .+.
T Consensus 328 --------------------------------~~~f~Tgs~d~ea~n~e~~~-------l~~~~~~lif~t~ssd~~~~~ 368 (1113)
T KOG0644|consen 328 --------------------------------GDRFLTGSRDGEARNHEFEQ-------LAWRSNLLIFVTRSSDLSSIV 368 (1113)
T ss_pred --------------------------------ccccccccCCcccccchhhH-------hhhhccceEEEeccccccccc
Confidence 45588999998887776321 22233333333333332 456
Q ss_pred EEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCC-CeEEEeeCCCceE
Q 012799 376 ASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLK 454 (456)
Q Consensus 376 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~s~s~Dg~v~ 454 (456)
+++-.+-.+++|++.+|.++..+.+|...+.-+ .++|-. +...+++.||...
T Consensus 369 ~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvL---------------------------d~Hpfn~ri~msag~dgst~ 421 (1113)
T KOG0644|consen 369 VTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVL---------------------------DVHPFNPRIAMSAGYDGSTI 421 (1113)
T ss_pred eeeeeeeEeeeeecccchhhhhhcccccceeee---------------------------eecCCCcHhhhhccCCCceE
Confidence 777788899999999999999999999999998 667755 4556889999999
Q ss_pred EC
Q 012799 455 VT 456 (456)
Q Consensus 455 iW 456 (456)
||
T Consensus 422 iw 423 (1113)
T KOG0644|consen 422 IW 423 (1113)
T ss_pred ee
Confidence 88
No 212
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.73 E-value=9.2e-16 Score=146.42 Aligned_cols=272 Identities=19% Similarity=0.249 Sum_probs=182.9
Q ss_pred EeCCCCcceeEEecCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCcc------ccccCcccceEEEEecccccC
Q 012799 135 WDLNTQTPMFKCTGHKNWVLCIAWSADG-KHLVSGSKAGELQCWDPQTGKPSG------NPLSGHKKWITGISWEPVHLN 207 (456)
Q Consensus 135 wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~ 207 (456)
|+.+ |..+..+..|...+..++.++.. .++++|+.||+|++|+.+.-.... ..+......+..+...+
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~---- 1108 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG---- 1108 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc----
Confidence 5543 67778888899999999988754 999999999999999987532210 01222345677777766
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC--e-----EEEEec--CcCccEEEEEeCC--CC-eEEEEeCCCcEEEEECCCCeEEE
Q 012799 208 APCRRFVSASKDGDARIWDVSLR--K-----CVICLS--GHTLAVTCVKWGG--DG-VIYTGSQDCTIKVWETTQGKLIR 275 (456)
Q Consensus 208 ~~~~~l~~~~~dg~i~iwd~~~~--~-----~~~~~~--~~~~~v~~~~~~~--~~-~l~~~~~dg~i~iwd~~~~~~~~ 275 (456)
.++.+|+++.||.|++.+++.. + +..... .....+..-++.. .. .++.+..-+.|..||.++.....
T Consensus 1109 -~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w 1187 (1431)
T KOG1240|consen 1109 -NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW 1187 (1431)
T ss_pred -CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH
Confidence 8899999999999999998752 1 111121 2222233333433 22 67788888999999999877665
Q ss_pred Eee--cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCc
Q 012799 276 ELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353 (456)
Q Consensus 276 ~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 353 (456)
.++ ...+.|++++.+|. ++.++.|+..|.+.+||++-.....
T Consensus 1188 ~lk~~~~hG~vTSi~idp~------------------------------------~~WlviGts~G~l~lWDLRF~~~i~ 1231 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVIDPW------------------------------------CNWLVIGTSRGQLVLWDLRFRVPIL 1231 (1431)
T ss_pred hhhcCccccceeEEEecCC------------------------------------ceEEEEecCCceEEEEEeecCceee
Confidence 553 35577999999998 4569999999999999998766555
Q ss_pred cccccccccEeEEEECCC---CCEEEE-EE-CCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecc
Q 012799 354 TRMTGHQQLVNHVYFSPD---GQWVAS-AS-FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDM 428 (456)
Q Consensus 354 ~~~~~~~~~v~~~~~sp~---~~~l~s-~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~ 428 (456)
.-..++..+++.+..+|- ....++ ++ ..+.|.+|++.+|....++....+ +-.+ ....|.+.....+.
T Consensus 1232 sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~-~p~l------s~~~Ps~~~~kp~~ 1304 (1431)
T KOG1240|consen 1232 SWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDG-APIL------SYALPSNDARKPDS 1304 (1431)
T ss_pred cccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCC-Ccch------hhhcccccCCCCCc
Confidence 544566678888888773 245444 44 577899999999977776654311 1111 11122221111111
Q ss_pred cccccceeEecCCCeEEEeeCCCceEEC
Q 012799 429 SCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 429 ~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
......++...+..+.+|+.|..||.|
T Consensus 1305 -~~~~~~~~~~~~~~~ltggsd~kIR~w 1331 (1431)
T KOG1240|consen 1305 -LAGISCGVCEKNGFLLTGGSDMKIRKW 1331 (1431)
T ss_pred -ccceeeecccCCceeeecCCccceeec
Confidence 111112445556799999999999998
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.2e-14 Score=121.07 Aligned_cols=183 Identities=21% Similarity=0.326 Sum_probs=135.8
Q ss_pred cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe-cCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCCc
Q 012799 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKPS 185 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~ 185 (456)
+-.+..++|++.-.-+|++..|-.|++|+-.. +....++ .....|+|++|-|. ++.|+.|+.. -|.+|........
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence 45678899999777788999999999999766 4333443 45678999999995 4566666655 5999976532111
Q ss_pred cc-------------cccCcccceEEEEecccccCCCCCEEEEEeC-CCcEEEEECCCCeEEEEecCcCccEEEEEeCCC
Q 012799 186 GN-------------PLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD 251 (456)
Q Consensus 186 ~~-------------~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 251 (456)
.. ...+| ..|+++.|.+ ||..+++++. |..|.|||..++.++.......+.++-+.|+|+
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-----dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPd 249 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-----DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPD 249 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcC-----CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCC
Confidence 10 12233 6799999999 8999999876 668999999999887766556778999999999
Q ss_pred C-eEEEEeCCCcEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeecc
Q 012799 252 G-VIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGA 299 (456)
Q Consensus 252 ~-~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 299 (456)
+ .|+++.-|+..++|+.... ...+-.. ..+.|..-+|+|.+.+....
T Consensus 250 gd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~ 298 (445)
T KOG2139|consen 250 GDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFA 298 (445)
T ss_pred CCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEE
Confidence 9 9999999999999965443 3333333 34489999999997654433
No 214
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=3e-15 Score=125.87 Aligned_cols=249 Identities=12% Similarity=0.164 Sum_probs=186.5
Q ss_pred CcccEEEEEECCCCC--eEEEEECCCcEEEEeCCCCcceeE------EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 012799 107 HTEAVLSVAFSPDGR--QLASGSGDTTVRLWDLNTQTPMFK------CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (456)
Q Consensus 107 h~~~V~~~~~s~~~~--~l~~~~~d~~v~vwd~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 178 (456)
-...|..++|.-+++ .+...+.|..+..+.+........ ......+|..++.. ...|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 456778888876654 455555677777777766544333 33456667776654 33688888999999999
Q ss_pred CCCCCCccc--cccCcccceEEEEecccccCCCCCEEEEEeCC--CcEEEEECCCCeEEEEecCc---------CccEEE
Q 012799 179 PQTGKPSGN--PLSGHKKWITGISWEPVHLNAPCRRFVSASKD--GDARIWDVSLRKCVICLSGH---------TLAVTC 245 (456)
Q Consensus 179 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~---------~~~v~~ 245 (456)
.+.+..... ........+..+.-.+. ....+++||.. ..+.+||++..+.+..-+.- .-.+++
T Consensus 132 ~k~~d~hss~l~~la~g~g~~~~r~~~~----~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATGPGLYDVRQTDT----DPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred ccCCccccccceeeecCCceeeeccCCC----CCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 985542110 11112234445544442 33567779988 88999999988777655432 224677
Q ss_pred EEeCCC--C-eEEEEeCCCcEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhh
Q 012799 246 VKWGGD--G-VIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321 (456)
Q Consensus 246 ~~~~~~--~-~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (456)
+.|.+. . .|++++.-+.+++||.+.+ +++..+.....++.++...|.
T Consensus 208 i~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~----------------------------- 258 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPS----------------------------- 258 (412)
T ss_pred ceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCC-----------------------------
Confidence 888776 4 9999999999999999865 578888888889999998887
Q ss_pred hhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEE
Q 012799 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV 397 (456)
Q Consensus 322 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~ 397 (456)
++++++|...|.+..||++........+.+-.+.|+++..+|.+++|+++|-|..|||+|+++.+++..
T Consensus 259 -------gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 259 -------GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred -------CcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 667999999999999999988887777889999999999999999999999999999999999766543
No 215
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.4e-16 Score=139.34 Aligned_cols=216 Identities=24% Similarity=0.340 Sum_probs=163.6
Q ss_pred eeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcE
Q 012799 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222 (456)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i 222 (456)
...+.||.+.|.|+.|+.+|.+|++|+.|-.+.|||.-..+.+..+-.+|...|.++.|.|.. +...+++|..|..|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t---nnriv~sgAgDk~i 119 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT---NNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC---CCeEEEeccCcceE
Confidence 456789999999999999999999999999999999998888887889999999999999965 66799999999999
Q ss_pred EEEECCC----------CeEEEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEE----------EeecC
Q 012799 223 RIWDVSL----------RKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIR----------ELKGH 280 (456)
Q Consensus 223 ~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~----------~~~~~ 280 (456)
+++|+.. ......+..|...|..++..|++ .+.+++.||+|+-+|++...... .+...
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 9999974 23344556788899999999988 89999999999999998742211 01111
Q ss_pred CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC--------
Q 012799 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP-------- 352 (456)
Q Consensus 281 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-------- 352 (456)
.-...++.++|. ...+|+.|+.|-..++||.+...+.
T Consensus 200 lielk~ltisp~-----------------------------------rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~ 244 (758)
T KOG1310|consen 200 LIELKCLTISPS-----------------------------------RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMN 244 (758)
T ss_pred hheeeeeeecCC-----------------------------------CCceEEecCCCchhhhhhhhhhccCCCCCcccc
Confidence 123455666665 3678999999999999994322110
Q ss_pred ---------cccc-cccc-----------ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEE
Q 012799 353 ---------KTRM-TGHQ-----------QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396 (456)
Q Consensus 353 ---------~~~~-~~~~-----------~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~ 396 (456)
+..+ .+|- ..++-++|+|+|.-|...-..-.|+++|+..++...
T Consensus 245 ~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 245 TCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred CCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 1111 1221 125667899998876665555679999988776543
No 216
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=2.1e-14 Score=132.97 Aligned_cols=228 Identities=17% Similarity=0.165 Sum_probs=152.9
Q ss_pred cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCCCccccccCcccceEEEEecccccC
Q 012799 131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK---AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207 (456)
Q Consensus 131 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 207 (456)
.|.+||.+.... ..+..+...+...+|+|||+.|+..+. +..+.+|++.+++... +......+..+.|+|
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--l~~~~~~~~~~~~SP---- 252 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--VASFPRHNGAPAFSP---- 252 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--ccCCCCCcCCeEECC----
Confidence 699999875543 444557778999999999999987543 3579999998876432 222333455688999
Q ss_pred CCCCEEEEE-eCCC--cEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeC-CCc--EEEEECCCCeEEEEeecC
Q 012799 208 APCRRFVSA-SKDG--DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ-DCT--IKVWETTQGKLIRELKGH 280 (456)
Q Consensus 208 ~~~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~ 280 (456)
+|+.|+.. +.+| .|++||+.+++... +..+...+....|+|+| .|+..+. ++. |..+|+.+++. ..+...
T Consensus 253 -DG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~ 329 (429)
T PRK03629 253 -DGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWE 329 (429)
T ss_pred -CCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecC
Confidence 99888865 4444 58999998876544 33344567889999999 5655554 344 55557766644 333333
Q ss_pred CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC---CcEEEEecCCCCCCccccc
Q 012799 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD---FTMFLWEPAVSKQPKTRMT 357 (456)
Q Consensus 281 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~ 357 (456)
........|+|+ +++++..+.+ ..|.+||+..+... .+.
T Consensus 330 ~~~~~~~~~SpD------------------------------------G~~Ia~~~~~~g~~~I~~~dl~~g~~~--~Lt 371 (429)
T PRK03629 330 GSQNQDADVSSD------------------------------------GKFMVMVSSNGGQQHIAKQDLATGGVQ--VLT 371 (429)
T ss_pred CCCccCEEECCC------------------------------------CCEEEEEEccCCCceEEEEECCCCCeE--EeC
Confidence 444556778887 4456554433 35888897655422 222
Q ss_pred cccccEeEEEECCCCCEEEEEECCCc---EEEEeCCCCeEEEEEecccccEEEE
Q 012799 358 GHQQLVNHVYFSPDGQWVASASFDKS---IKLWNGTTGKFVAVFRGHVGPVYQI 408 (456)
Q Consensus 358 ~~~~~v~~~~~sp~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~~v~~i 408 (456)
. ........|+|||++|+.++.++. +.++++ +|+....+.+|.+.+...
T Consensus 372 ~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p 423 (429)
T PRK03629 372 D-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFP 423 (429)
T ss_pred C-CCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCc
Confidence 1 112346789999999999888764 677776 566667777788888777
No 217
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.70 E-value=6.3e-17 Score=138.71 Aligned_cols=230 Identities=18% Similarity=0.245 Sum_probs=189.0
Q ss_pred ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 188 (456)
..-..+.++.+|++|+.|+..|.|-.+|..+++....+. -...|.++.|-.+.+++|++-. ..+.|||-..-+.-+
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQK-~y~yvYD~~GtElHC-- 205 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQK-KYVYVYDNNGTELHC-- 205 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhhh-ceEEEecCCCcEEee--
Confidence 345678999999999999999999999999998888776 4567899999988888888754 589999965433322
Q ss_pred ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEE
Q 012799 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWE 267 (456)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd 267 (456)
+. ....|..+.|.|.+ -+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-+ .+-+|...|+|.+|.
T Consensus 206 lk-~~~~v~rLeFLPyH-----fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWS 279 (545)
T KOG1272|consen 206 LK-RHIRVARLEFLPYH-----FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWS 279 (545)
T ss_pred hh-hcCchhhhcccchh-----heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecC
Confidence 22 23568889999955 478899999999999999999999988888899999999977 888999999999999
Q ss_pred CCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecC
Q 012799 268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA 347 (456)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 347 (456)
....+++..+..|.++|.++++.+. |.+++|.+.|..++|||++
T Consensus 280 P~skePLvKiLcH~g~V~siAv~~~------------------------------------G~YMaTtG~Dr~~kIWDlR 323 (545)
T KOG1272|consen 280 PNSKEPLVKILCHRGPVSSIAVDRG------------------------------------GRYMATTGLDRKVKIWDLR 323 (545)
T ss_pred CCCcchHHHHHhcCCCcceEEECCC------------------------------------CcEEeecccccceeEeeec
Confidence 9999999888889999999999998 7779999999999999999
Q ss_pred CCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEe
Q 012799 348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388 (456)
Q Consensus 348 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd 388 (456)
....+..... .-+...+++|..| +||.+ ....|.||.
T Consensus 324 ~~~ql~t~~t--p~~a~~ls~Sqkg-lLA~~-~G~~v~iw~ 360 (545)
T KOG1272|consen 324 NFYQLHTYRT--PHPASNLSLSQKG-LLALS-YGDHVQIWK 360 (545)
T ss_pred cccccceeec--CCCcccccccccc-ceeee-cCCeeeeeh
Confidence 8775544333 3446778888665 34444 455699994
No 218
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.69 E-value=4.1e-15 Score=130.08 Aligned_cols=233 Identities=15% Similarity=0.153 Sum_probs=148.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccC---cccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC
Q 012799 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSG---HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228 (456)
Q Consensus 152 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 228 (456)
.+....++-.|++|+..-. ..+.+|+.+.+......+.. ......+-.|....-.+.+--++.|-.-|.+.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 3444555556777665432 36888888754322211110 0111233344333233366678888888999999876
Q ss_pred CCeEEEEec----CcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCC--------------eEEEEe--ec--CCcce
Q 012799 229 LRKCVICLS----GHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQG--------------KLIREL--KG--HGHWV 284 (456)
Q Consensus 229 ~~~~~~~~~----~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~--------------~~~~~~--~~--~~~~i 284 (456)
..+..+.+. -.+..++|+.|-|.+ .++++-.+|.+++||..-. ...... .. ...++
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 532221111 134789999999855 8888999999999986311 000000 00 00111
Q ss_pred EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEe
Q 012799 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN 364 (456)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 364 (456)
...++... ......+.+++.+|++.+.||.++|||..+.. ..-.++.--+...
T Consensus 284 ~~w~~~~g--------------------------~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-Llg~mkSYFGGLL 336 (636)
T KOG2394|consen 284 ARWHIGEG--------------------------SINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-LLGVMKSYFGGLL 336 (636)
T ss_pred ceeEeccc--------------------------cccceeEcCCCceEEEEecCceEEEeeccHHH-HHHHHHhhccceE
Confidence 11111110 00111233458889999999999999976533 3333444446789
Q ss_pred EEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeee
Q 012799 365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412 (456)
Q Consensus 365 ~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 412 (456)
|++|||||+||++|++|--|.||.+..++.+..-.+|...|+.++|.+
T Consensus 337 CvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 337 CVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999999999999999999999999999999999985
No 219
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.69 E-value=8e-14 Score=125.09 Aligned_cols=293 Identities=19% Similarity=0.160 Sum_probs=172.2
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEe
Q 012799 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWD 178 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd 178 (456)
.+.++......-..+.|+|||+++++++.||.|.++|+.+.+.+.++... .....+++++||++++++. .++.+.++|
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D 106 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVID 106 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEE
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEec
Confidence 34555544444455789999999999999999999999999999888744 4568899999999998775 589999999
Q ss_pred CCCCCCccccccC------cccceEEEEecccccCCCCCEEEEEeC-CCcEEEEECCCCeEEE-EecCcCccEEEEEeCC
Q 012799 179 PQTGKPSGNPLSG------HKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVI-CLSGHTLAVTCVKWGG 250 (456)
Q Consensus 179 ~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~ 250 (456)
.++.+.+.....+ ....+.++..+| ....++..-. .+.|.+.|....+.+. .............|+|
T Consensus 107 ~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-----~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp 181 (369)
T PF02239_consen 107 AETLEPVKTIPTGGMPVDGPESRVAAIVASP-----GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP 181 (369)
T ss_dssp TTT--EEEEEE--EE-TTTS---EEEEEE-S-----SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T
T ss_pred cccccceeecccccccccccCCCceeEEecC-----CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCc
Confidence 9998876533221 234566776666 5565555544 4888888877654332 2222345667889999
Q ss_pred CC-eEEE-EeCCCcEEEEECCCCeEEEEeec----CCcceEEEEecCcc-eeeeccccCCCCccCChHHHHHHHHhhhhh
Q 012799 251 DG-VIYT-GSQDCTIKVWETTQGKLIRELKG----HGHWVNSLALSTEY-ALRTGAFDHTGKQYSSPEEMKKAALERYNK 323 (456)
Q Consensus 251 ~~-~l~~-~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (456)
++ ++++ ...++.|-++|..+++.+..+.. |..+...+ .+|.+ .+-...
T Consensus 182 dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~------------------------ 236 (369)
T PF02239_consen 182 DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATS------------------------ 236 (369)
T ss_dssp TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEE------------------------
T ss_pred ccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeec------------------------
Confidence 98 5544 45677899999999988776642 22233332 22221 100000
Q ss_pred ccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEE----ECCCcEEEEeCCCCeEEEEEe
Q 012799 324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA----SFDKSIKLWNGTTGKFVAVFR 399 (456)
Q Consensus 324 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~ 399 (456)
..+...++.-....+.+||... .+.+..+...... ..+..+|+++++.+. ...+.|.++|.++.+.+..+.
T Consensus 237 ---~~~~~~~~~ig~~~v~v~d~~~-wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~ 311 (369)
T PF02239_consen 237 ---GLGYFAIPLIGTDPVSVHDDYA-WKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT 311 (369)
T ss_dssp ---BSSSSEEEEEE--TTT-STTTB-TSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH
T ss_pred ---cccceecccccCCccccchhhc-CeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEe
Confidence 0011122222233455666443 3344444444444 778889999999987 445899999999998877775
Q ss_pred cccc-cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCC--ceEE
Q 012799 400 GHVG-PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS--TLKV 455 (456)
Q Consensus 400 ~~~~-~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg--~v~i 455 (456)
...+ .+..+ .|++||+.+..+..++ .|.|
T Consensus 312 ~~~~~~~~h~---------------------------ef~~dG~~v~vS~~~~~~~i~v 343 (369)
T PF02239_consen 312 PGPGKRVVHM---------------------------EFNPDGKEVWVSVWDGNGAIVV 343 (369)
T ss_dssp HHHT--EEEE---------------------------EE-TTSSEEEEEEE--TTEEEE
T ss_pred ccCCCcEecc---------------------------EECCCCCEEEEEEecCCCEEEE
Confidence 3332 46666 8899999766655443 4654
No 220
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=2.9e-14 Score=132.69 Aligned_cols=229 Identities=21% Similarity=0.231 Sum_probs=151.6
Q ss_pred CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCCCccccccCcccceEEEEeccccc
Q 012799 130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206 (456)
Q Consensus 130 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 206 (456)
..|.+||... .....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+....+.|+|
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--l~~~~g~~~~~~~Sp--- 257 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--VASFRGINGAPSFSP--- 257 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--eccCCCCccCceECC---
Confidence 3689999864 4445566677889999999999999987743 469999998876532 333344455788998
Q ss_pred CCCCCEEEE-EeCCC--cEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe-CCCc--EEEEECCCCeEEEEeec
Q 012799 207 NAPCRRFVS-ASKDG--DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS-QDCT--IKVWETTQGKLIRELKG 279 (456)
Q Consensus 207 ~~~~~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~dg~--i~iwd~~~~~~~~~~~~ 279 (456)
+|+.++. .+.+| .|++||+.+++.. .+..+.......+|+|+| .++.++ .+|. |+++|+.+++... +..
T Consensus 258 --DG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~ 333 (433)
T PRK04922 258 --DGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTF 333 (433)
T ss_pred --CCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eec
Confidence 8887764 45555 5999999887643 454555556778999999 565554 3444 7777777665433 222
Q ss_pred CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC---cEEEEecCCCCCCcccc
Q 012799 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF---TMFLWEPAVSKQPKTRM 356 (456)
Q Consensus 280 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~ 356 (456)
........+|+|+ +++++..+.++ .|.+||+..+... .+
T Consensus 334 ~g~~~~~~~~SpD------------------------------------G~~Ia~~~~~~~~~~I~v~d~~~g~~~--~L 375 (433)
T PRK04922 334 QGNYNARASVSPD------------------------------------GKKIAMVHGSGGQYRIAVMDLSTGSVR--TL 375 (433)
T ss_pred CCCCccCEEECCC------------------------------------CCEEEEEECCCCceeEEEEECCCCCeE--EC
Confidence 3334446788887 45566554332 6899997655432 22
Q ss_pred ccccccEeEEEECCCCCEEEEEECC---CcEEEEeCCCCeEEEEEecccccEEEE
Q 012799 357 TGHQQLVNHVYFSPDGQWVASASFD---KSIKLWNGTTGKFVAVFRGHVGPVYQI 408 (456)
Q Consensus 357 ~~~~~~v~~~~~sp~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i 408 (456)
. +........|+|||++|+..+.+ +.+.++++. |.....+..+.+.+...
T Consensus 376 t-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p 428 (433)
T PRK04922 376 T-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREP 428 (433)
T ss_pred C-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCC
Confidence 2 22234567999999998776653 357788874 44555555555556665
No 221
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=2.1e-14 Score=133.11 Aligned_cols=229 Identities=18% Similarity=0.226 Sum_probs=147.0
Q ss_pred CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCCCccccccCcccceEEEEeccccc
Q 012799 130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206 (456)
Q Consensus 130 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 206 (456)
..|.++|.+ +.....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--l~~~~g~~~~~~~SP--- 249 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--VANFKGSNSAPAWSP--- 249 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--eecCCCCccceEECC---
Confidence 367777774 44445556678889999999999999887643 359999999886542 333345567889999
Q ss_pred CCCCCEEEE-EeCCCcEEEEE--CCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe-CCCcEEEEE--CCCCeEEEEeec
Q 012799 207 NAPCRRFVS-ASKDGDARIWD--VSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS-QDCTIKVWE--TTQGKLIRELKG 279 (456)
Q Consensus 207 ~~~~~~l~~-~~~dg~i~iwd--~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~dg~i~iwd--~~~~~~~~~~~~ 279 (456)
+|+.++. .+.+|...+|. +..+. ...+..+........|+|+| .++..+ .+|...+|. +.+++.. .+..
T Consensus 250 --DG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~ 325 (427)
T PRK02889 250 --DGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTF 325 (427)
T ss_pred --CCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEec
Confidence 8888874 56777766665 44443 44555555556778899999 555444 345656664 4444332 2222
Q ss_pred CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC---cEEEEecCCCCCCcccc
Q 012799 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF---TMFLWEPAVSKQPKTRM 356 (456)
Q Consensus 280 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~ 356 (456)
.........|+|+ +++++..+.++ .|.+||+..+... . +
T Consensus 326 ~g~~~~~~~~SpD------------------------------------G~~Ia~~s~~~g~~~I~v~d~~~g~~~-~-l 367 (427)
T PRK02889 326 TGSYNTSPRISPD------------------------------------GKLLAYISRVGGAFKLYVQDLATGQVT-A-L 367 (427)
T ss_pred CCCCcCceEECCC------------------------------------CCEEEEEEccCCcEEEEEEECCCCCeE-E-c
Confidence 2233345677776 55677666544 6999997665422 2 2
Q ss_pred ccccccEeEEEECCCCCEEEEEECCC---cEEEEeCCCCeEEEEEecccccEEEE
Q 012799 357 TGHQQLVNHVYFSPDGQWVASASFDK---SIKLWNGTTGKFVAVFRGHVGPVYQI 408 (456)
Q Consensus 357 ~~~~~~v~~~~~sp~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~i 408 (456)
... .......|+|||++|+.++.++ .+.+.+. +|+....+..+.+.+...
T Consensus 368 t~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p 420 (427)
T PRK02889 368 TDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREP 420 (427)
T ss_pred cCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCC
Confidence 221 2346789999999988877554 3555565 466666666566666666
No 222
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=3.1e-14 Score=119.90 Aligned_cols=238 Identities=15% Similarity=0.262 Sum_probs=172.5
Q ss_pred CCCCEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCCCccc-----cccCcccceEEEEecccccCCCCCEEEEEeCCCc
Q 012799 149 HKNWVLCIAWSADGK--HLVSGSKAGELQCWDPQTGKPSGN-----PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221 (456)
Q Consensus 149 ~~~~v~~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~ 221 (456)
....|..++|.-+++ .+...+.|..+..+.+........ ......+.|..+... ...|++|-.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-------dg~Litc~~sG~ 126 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-------DGTLITCVSSGN 126 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-------CCEEEEEecCCc
Confidence 445677777775443 444444566677766665544332 223334555555542 357888899999
Q ss_pred EEEEECCCCe----EEEEecCcCccEEEEEeCCCC--eEEEEeCC--CcEEEEECCCCeEEEEeecCC---------cce
Q 012799 222 ARIWDVSLRK----CVICLSGHTLAVTCVKWGGDG--VIYTGSQD--CTIKVWETTQGKLIRELKGHG---------HWV 284 (456)
Q Consensus 222 i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~---------~~i 284 (456)
+.+|....+. .+..+.. ...+..+.-++.. .+++|+.. ..+.+||+.+.+.+.+-+... -++
T Consensus 127 l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~ 205 (412)
T KOG3881|consen 127 LQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWI 205 (412)
T ss_pred EEEEeccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeee
Confidence 9999987432 2222222 2344555555544 66668888 889999999886655443221 123
Q ss_pred EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEe
Q 012799 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN 364 (456)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 364 (456)
+++.|-+. .+...|++++.-+.+++||.+.+..++..+.-.+.+++
T Consensus 206 tdi~Fl~g----------------------------------~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is 251 (412)
T KOG3881|consen 206 TDIRFLEG----------------------------------SPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPIS 251 (412)
T ss_pred ccceecCC----------------------------------CCCceEEEEecceeEEEecCcccCcceeEeccccCcce
Confidence 33333332 12566999999999999999998889988888899999
Q ss_pred EEEECCCCCEEEEEECCCcEEEEeCCCCeEEEE-EecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCe
Q 012799 365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV-FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL 443 (456)
Q Consensus 365 ~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 443 (456)
++...|+|++|++|..-|.+..||++.++++.. +.+-.+.|.++ ..+|.+++
T Consensus 252 ~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsi---------------------------h~hp~~~~ 304 (412)
T KOG3881|consen 252 STGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSI---------------------------HCHPTHPV 304 (412)
T ss_pred eeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceE---------------------------EEcCCCce
Confidence 999999999999999999999999999999887 88999999999 77999999
Q ss_pred EEEeeCCCceEE
Q 012799 444 LLSGSKDSTLKV 455 (456)
Q Consensus 444 l~s~s~Dg~v~i 455 (456)
|+++|-|..|||
T Consensus 305 las~GLDRyvRI 316 (412)
T KOG3881|consen 305 LASCGLDRYVRI 316 (412)
T ss_pred EEeeccceeEEE
Confidence 999999999998
No 223
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.66 E-value=6e-15 Score=117.65 Aligned_cols=247 Identities=17% Similarity=0.187 Sum_probs=162.4
Q ss_pred cccccc-CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcC-----CCC----EEEEEe
Q 012799 100 CSATIA-GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA-----DGK----HLVSGS 169 (456)
Q Consensus 100 ~~~~l~-~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~-----~~~----~l~s~~ 169 (456)
..-.++ .|...|+.+.--|++ .|.+-+.|+.+.+|++..+..+.. |.-.++++.|.+ +++ .++.-+
T Consensus 47 ~~~~~r~~g~~~it~lq~~p~d-~l~tqgRd~~L~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~ 122 (323)
T KOG0322|consen 47 DLPLIRLFGRLFITNLQSIPND-SLDTQGRDPLLILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPS 122 (323)
T ss_pred cchhhhhhccceeeceeecCCc-chhhcCCCceEEEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCC
Confidence 344555 578899999999984 578888999999999986543322 334444555543 111 111111
Q ss_pred CCC-eEEEEeCCCCCCcc---ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEE----------EE
Q 012799 170 KAG-ELQCWDPQTGKPSG---NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV----------IC 235 (456)
Q Consensus 170 ~dg-~i~vwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----------~~ 235 (456)
+.. .+++-|.-....+. ....+..+.+.+..+... ....-.+++|-++|.+.+||+.++..+ ..
T Consensus 123 rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~--c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~ 200 (323)
T KOG0322|consen 123 RGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA--CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESP 200 (323)
T ss_pred cccchhhhhccCccceeEccCchhccccCceeeeecccc--ccceEEEEEeccCCeEEEEEccCCceeeccccccccccc
Confidence 100 01111111110000 011123345555554321 112235667888999999999987433 33
Q ss_pred ecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCC--e--EEEEeecCCcceEEEEecCcceeeeccccCCCCccCCh
Q 012799 236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG--K--LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP 310 (456)
Q Consensus 236 ~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (456)
...|..+|.++.+.+.- .=++|+.+..+..|++... . ....+...+..+..+.+-|+
T Consensus 201 ~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD------------------ 262 (323)
T KOG0322|consen 201 NASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPD------------------ 262 (323)
T ss_pred hhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccC------------------
Confidence 45688999999998744 5667788888888887643 2 22233334456777888887
Q ss_pred HHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeC
Q 012799 311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389 (456)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~ 389 (456)
++.+++++.|+.|++|..++. .+...++.|...|++++|+|+..++|+++.|++|.+|++
T Consensus 263 ------------------~KIlATAGWD~RiRVyswrtl-~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 263 ------------------GKILATAGWDHRIRVYSWRTL-NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ------------------CcEEeecccCCcEEEEEeccC-CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 556999999999999997765 466778899999999999999999999999999999986
No 224
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.65 E-value=2.1e-13 Score=112.45 Aligned_cols=306 Identities=16% Similarity=0.247 Sum_probs=188.4
Q ss_pred cccEEEEEECCCCCeEEEE-ECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCCc
Q 012799 108 TEAVLSVAFSPDGRQLASG-SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQTGKPS 185 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~-~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~ 185 (456)
-+.|.-+.|..|..+++++ ..|+.|.+|++...+-...+.....++.+++|+|||+.| .+...|-.|.+|.+.+.+..
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 4678889999998877665 578899999998877777888888999999999999655 46667889999999887754
Q ss_pred cccccCcccceEEEEecccccCCCCCEEEEEeC------------------------------------CCcEEEEECCC
Q 012799 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASK------------------------------------DGDARIWDVSL 229 (456)
Q Consensus 186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~------------------------------------dg~i~iwd~~~ 229 (456)
. +.-.+..+..++|+| +|++.+.++. +..+.+||.--
T Consensus 128 ~--~~~pK~~~kg~~f~~-----dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L 200 (447)
T KOG4497|consen 128 L--LPHPKTNVKGYAFHP-----DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL 200 (447)
T ss_pred E--ecccccCceeEEECC-----CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh
Confidence 3 333344567888888 7777665542 22345555322
Q ss_pred CeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeec----CC---------------cceEEEEe
Q 012799 230 RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKG----HG---------------HWVNSLAL 289 (456)
Q Consensus 230 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~---------------~~i~~~~~ 289 (456)
.-.+..+. -.-.+..++|+|.+ .+++|+.|+.+|+.+--+-+...++-. |. -...++.|
T Consensus 201 eykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf 279 (447)
T KOG4497|consen 201 EYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSF 279 (447)
T ss_pred hheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccccc
Confidence 22222221 23568889999977 899999999999877655544433310 00 01123333
Q ss_pred cCcceeeeccccCCCCccCChHHHHHHH-----Hhh-------hhhccCCCCCEEEEEeC--CCcEEEEecCCCCCCccc
Q 012799 290 STEYALRTGAFDHTGKQYSSPEEMKKAA-----LER-------YNKIKGNAPERLVSGSD--DFTMFLWEPAVSKQPKTR 355 (456)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-------~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~ 355 (456)
.|.. +....+......+.......... .+. ....+..+..++++-.+ -+.+-+||++..+.....
T Consensus 280 ~p~~-~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL 358 (447)
T KOG4497|consen 280 TPTD-LEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL 358 (447)
T ss_pred CCCc-cccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh
Confidence 3321 10111110000000000000000 000 00113344445554433 246889998765432222
Q ss_pred cccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccce
Q 012799 356 MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLY 435 (456)
Q Consensus 356 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (456)
-...+|....|+|....|+.+.....+++|...-...+.. .+..-.|.++
T Consensus 359 --iQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l--------------------------- 408 (447)
T KOG4497|consen 359 --IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKL--------------------------- 408 (447)
T ss_pred --hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeE---------------------------
Confidence 2345699999999988888888788899998765444443 2233567777
Q ss_pred eEecCCCeEEEeeCCCc
Q 012799 436 SWSADSRLLLSGSKDST 452 (456)
Q Consensus 436 ~~s~dg~~l~s~s~Dg~ 452 (456)
+|..+|..++..++|..
T Consensus 409 ~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 409 QWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EecCCCcEEEEEcCCce
Confidence 89999999999988854
No 225
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=6.2e-13 Score=117.39 Aligned_cols=275 Identities=19% Similarity=0.230 Sum_probs=174.8
Q ss_pred cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEE-----eCC-----CeEEEE
Q 012799 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-----SKA-----GELQCW 177 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-----~~d-----g~i~vw 177 (456)
..+.+..+++++|+++|.+. +..++|++..++..+.+.... .++++.|+|-|++|.+= ..+ -.+.+|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 44578889999999888875 558999999888644444322 78999999999998762 122 247799
Q ss_pred eCCCCCCcccccc---------------------------------------CcccceEEEEecccccCCCCCEEEE---
Q 012799 178 DPQTGKPSGNPLS---------------------------------------GHKKWITGISWEPVHLNAPCRRFVS--- 215 (456)
Q Consensus 178 d~~~~~~~~~~~~---------------------------------------~~~~~v~~~~~~~~~~~~~~~~l~~--- 215 (456)
+.+++.....+.. -|...|..+.++|.. ....+++
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp---~~~~vAvyvP 187 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGP---EPPFVAVYVP 187 (566)
T ss_pred eeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCC---CCceEEEEcc
Confidence 9887542211111 122334444444411 1122322
Q ss_pred --EeCCCcEEEEECCCCeE---EEEecCcCccEEEEEeCCCC--eEEEEeC--C---------CcEEEEECCCCeEEEEe
Q 012799 216 --ASKDGDARIWDVSLRKC---VICLSGHTLAVTCVKWGGDG--VIYTGSQ--D---------CTIKVWETTQGKLIREL 277 (456)
Q Consensus 216 --~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~--~l~~~~~--d---------g~i~iwd~~~~~~~~~~ 277 (456)
.|.-+.|+||....... +..-.-....-..+.|++.| .|+.++. | .++++.++........+
T Consensus 188 e~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L 267 (566)
T KOG2315|consen 188 EKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL 267 (566)
T ss_pred CCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec
Confidence 23445677776542111 11111122333457788766 4433332 3 35778887733333333
Q ss_pred ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccc
Q 012799 278 KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT 357 (456)
Q Consensus 278 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 357 (456)
. ..++|.++.|++.+.-. -++.|-.-..+.|||++.. ++. .
T Consensus 268 ~-k~GPVhdv~W~~s~~EF----------------------------------~VvyGfMPAkvtifnlr~~--~v~--d 308 (566)
T KOG2315|consen 268 L-KEGPVHDVTWSPSGREF----------------------------------AVVYGFMPAKVTIFNLRGK--PVF--D 308 (566)
T ss_pred C-CCCCceEEEECCCCCEE----------------------------------EEEEecccceEEEEcCCCC--EeE--e
Confidence 3 57899999999985321 2667778889999996532 222 2
Q ss_pred cccccEeEEEECCCCCEEEEEECC---CcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccc
Q 012799 358 GHQQLVNHVYFSPDGQWVASASFD---KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSL 434 (456)
Q Consensus 358 ~~~~~v~~~~~sp~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (456)
-.+++-+++-|+|.|++|+.+|-+ |.+-|||+.+.+++..+......+ |
T Consensus 309 f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~----~------------------------ 360 (566)
T KOG2315|consen 309 FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTV----F------------------------ 360 (566)
T ss_pred CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceE----E------------------------
Confidence 335667889999999998887754 799999999988888777443322 2
Q ss_pred eeEecCCCeEEEeeC------CCceEEC
Q 012799 435 YSWSADSRLLLSGSK------DSTLKVT 456 (456)
Q Consensus 435 ~~~s~dg~~l~s~s~------Dg~v~iW 456 (456)
.|+|||++++|+.. |+.++||
T Consensus 361 -eW~PdGe~flTATTaPRlrvdNg~Kiw 387 (566)
T KOG2315|consen 361 -EWSPDGEYFLTATTAPRLRVDNGIKIW 387 (566)
T ss_pred -EEcCCCcEEEEEeccccEEecCCeEEE
Confidence 89999999999876 5667777
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.4e-13 Score=127.47 Aligned_cols=224 Identities=17% Similarity=0.190 Sum_probs=149.6
Q ss_pred ccccccccCCcccEEEEEECCCCCeEEEEE---CCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEE-eCCC-
Q 012799 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGS---GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-SKAG- 172 (456)
Q Consensus 98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~---~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg- 172 (456)
+...+.+..+...+.+.+|+|||+.||..+ .+..+++|++.+++... +....+.+..++|+|||+.|+.. +.+|
T Consensus 188 g~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~ 266 (429)
T PRK03629 188 GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGS 266 (429)
T ss_pred CCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCC
Confidence 334456667788999999999999998764 24579999998775432 22334445678999999988865 4454
Q ss_pred -eEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC-C--cEEEEECCCCeEEEEecCcCccEEEEEe
Q 012799 173 -ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-G--DARIWDVSLRKCVICLSGHTLAVTCVKW 248 (456)
Q Consensus 173 -~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 248 (456)
.|.+||+++++... +..+...+....|+| +|+.++..+.+ + .|+++|+.+++.. .+...........|
T Consensus 267 ~~I~~~d~~tg~~~~--lt~~~~~~~~~~wSP-----DG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~ 338 (429)
T PRK03629 267 LNLYVMDLASGQIRQ--VTDGRSNNTEPTWFP-----DSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADV 338 (429)
T ss_pred cEEEEEECCCCCEEE--ccCCCCCcCceEECC-----CCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEE
Confidence 58899998876543 333445677889999 99988877764 4 4555577665433 33333445567889
Q ss_pred CCCC-eEEEEeCC---CcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhc
Q 012799 249 GGDG-VIYTGSQD---CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324 (456)
Q Consensus 249 ~~~~-~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (456)
+|+| .++..+.+ ..|.+||+.+++.. .+... .......|+|+
T Consensus 339 SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpD-------------------------------- 384 (429)
T PRK03629 339 SSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPN-------------------------------- 384 (429)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCC--------------------------------
Confidence 9999 55554433 35888999887643 33221 12345667776
Q ss_pred cCCCCCEEEEEeCCCc---EEEEecCCCCCCccccccccccEeEEEECC
Q 012799 325 KGNAPERLVSGSDDFT---MFLWEPAVSKQPKTRMTGHQQLVNHVYFSP 370 (456)
Q Consensus 325 ~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp 370 (456)
+..++.++.++. +.++++. + .....+.+|.+.+...+|+|
T Consensus 385 ----G~~i~~~s~~~~~~~l~~~~~~-G-~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 385 ----GTMVIYSSSQGMGSVLNLVSTD-G-RFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred ----CCEEEEEEcCCCceEEEEEECC-C-CCeEECccCCCCcCCcccCC
Confidence 666887777664 6666753 2 23344566788888899987
No 227
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=5.4e-14 Score=117.30 Aligned_cols=196 Identities=20% Similarity=0.313 Sum_probs=141.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC
Q 012799 150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL 229 (456)
Q Consensus 150 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 229 (456)
+..+..++|++.-..++++..|-.|++|+-.. .............|++++|.|. .+..|++|.. +-|.+|....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPl----saselavgCr-~gIciW~~s~ 171 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPL----SASELAVGCR-AGICIWSDSR 171 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccC----Ccceeeeeec-ceeEEEEcCc
Confidence 44577899999777888999999999999877 3333244455678999999995 3456777776 4599997642
Q ss_pred C----eE----------EEEecCcCccEEEEEeCCCC-eEEEEeC-CCcEEEEECCCCeEEEEeecCCcceEEEEecCcc
Q 012799 230 R----KC----------VICLSGHTLAVTCVKWGGDG-VIYTGSQ-DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY 293 (456)
Q Consensus 230 ~----~~----------~~~~~~~~~~v~~~~~~~~~-~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~ 293 (456)
. .. +..-.+| .+|++++|.+|| .+++++. |..|.+||..++..+.......+.+.-+.|+|+
T Consensus 172 tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPd- 249 (445)
T KOG2139|consen 172 TLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPD- 249 (445)
T ss_pred ccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCC-
Confidence 1 11 1122334 689999999999 7777665 678999999998877766556677889999998
Q ss_pred eeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCC
Q 012799 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ 373 (456)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 373 (456)
++++++++-|+..++|.......... ..-..+.|...+|+|+|+
T Consensus 250 -----------------------------------gd~lfaAt~davfrlw~e~q~wt~er-w~lgsgrvqtacWspcGs 293 (445)
T KOG2139|consen 250 -----------------------------------GDVLFAATCDAVFRLWQENQSWTKER-WILGSGRVQTACWSPCGS 293 (445)
T ss_pred -----------------------------------CCEEEEecccceeeeehhcccceecc-eeccCCceeeeeecCCCC
Confidence 66799999999999996443332222 222344899999999999
Q ss_pred EEEEEECCCcEEEEeCC
Q 012799 374 WVASASFDKSIKLWNGT 390 (456)
Q Consensus 374 ~l~s~~~dg~i~iwd~~ 390 (456)
+|.... .|.-++|.+.
T Consensus 294 fLLf~~-sgsp~lysl~ 309 (445)
T KOG2139|consen 294 FLLFAC-SGSPRLYSLT 309 (445)
T ss_pred EEEEEE-cCCceEEEEe
Confidence 865544 2334555543
No 228
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=3.1e-13 Score=125.98 Aligned_cols=216 Identities=16% Similarity=0.132 Sum_probs=146.7
Q ss_pred CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCCCccccccCcccceEEEEeccccc
Q 012799 130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK---AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206 (456)
Q Consensus 130 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 206 (456)
..|.++|.+. .....+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+....|+|
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~--~l~~~~g~~~~~~~SP--- 255 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE--LVGNFPGMTFAPRFSP--- 255 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--EeecCCCcccCcEECC---
Confidence 3788999854 445566778889999999999999988764 467999999888653 3445566677889999
Q ss_pred CCCCCEEE-EEeCCCc--EEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe-CCC--cEEEEECCCCeEEEEeec
Q 012799 207 NAPCRRFV-SASKDGD--ARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS-QDC--TIKVWETTQGKLIRELKG 279 (456)
Q Consensus 207 ~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~dg--~i~iwd~~~~~~~~~~~~ 279 (456)
+|+.++ +.+.++. |++||+.+++. ..+..+........|+|+| .++..+ .+| .|+++|+..++.. .+..
T Consensus 256 --DG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~ 331 (435)
T PRK05137 256 --DGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISF 331 (435)
T ss_pred --CCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eeec
Confidence 888776 4455554 77889887765 4455566667789999999 555554 333 6888898766543 3333
Q ss_pred CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC---CcEEEEecCCCCCCcccc
Q 012799 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD---FTMFLWEPAVSKQPKTRM 356 (456)
Q Consensus 280 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~ 356 (456)
....+....|+|+ ++.++....+ ..|.+||+..... ..+
T Consensus 332 ~~~~~~~~~~Spd------------------------------------G~~ia~~~~~~~~~~i~~~d~~~~~~--~~l 373 (435)
T PRK05137 332 GGGRYSTPVWSPR------------------------------------GDLIAFTKQGGGQFSIGVMKPDGSGE--RIL 373 (435)
T ss_pred CCCcccCeEECCC------------------------------------CCEEEEEEcCCCceEEEEEECCCCce--Eec
Confidence 3444566778887 4556655433 3678888644332 222
Q ss_pred ccccccEeEEEECCCCCEEEEEECC------CcEEEEeCCCCeE
Q 012799 357 TGHQQLVNHVYFSPDGQWVASASFD------KSIKLWNGTTGKF 394 (456)
Q Consensus 357 ~~~~~~v~~~~~sp~~~~l~s~~~d------g~i~iwd~~~~~~ 394 (456)
. ....+....|+|||++|+..+.+ ..+.++|+..+..
T Consensus 374 t-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 374 T-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred c-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 2 12246778999999998775543 2577778765543
No 229
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.63 E-value=1.2e-14 Score=127.12 Aligned_cols=169 Identities=24% Similarity=0.370 Sum_probs=131.1
Q ss_pred CCCCeEEEEECCCcEEEEeCCCCcceeEEe----cCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCC----cc--
Q 012799 118 PDGRQLASGSGDTTVRLWDLNTQTPMFKCT----GHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKP----SG-- 186 (456)
Q Consensus 118 ~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~----~~-- 186 (456)
|.+--|..|-.-|.|.+.|....+..+.+. -....|+|+.|-|. ...++.+-.+|.+.+||.+.... ..
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 455567777778888888876532221111 13478999999994 45666777899999997642110 00
Q ss_pred ---------------------ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEE
Q 012799 187 ---------------------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTC 245 (456)
Q Consensus 187 ---------------------~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 245 (456)
....--.+.|...+|+| ||++||+.+.||.++|||..+.+.+..++..-+...|
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-----DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLC 337 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-----DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLC 337 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcC-----CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEE
Confidence 00111233567777777 9999999999999999999998888877777889999
Q ss_pred EEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecC
Q 012799 246 VKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALST 291 (456)
Q Consensus 246 ~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~ 291 (456)
++|+||| ++++|+.|-.|.+|.+..++.+..=++|.++|..++|.|
T Consensus 338 vcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 338 VCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999 999999999999999999999999999999999999997
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1.3e-13 Score=127.94 Aligned_cols=185 Identities=22% Similarity=0.211 Sum_probs=122.8
Q ss_pred ccccccccCCcccEEEEEECCCCCeEEEEECC---CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEE-EEeCCCe
Q 012799 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGD---TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGE 173 (456)
Q Consensus 98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d---~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~ 173 (456)
+...+.+..+...+.+.+|+|||+.|+..+.+ ..|++||+.+++.. .+....+.+.+.+|+|||+.|+ +.+.+|.
T Consensus 185 G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~ 263 (427)
T PRK02889 185 GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGRTLAVALSRDGN 263 (427)
T ss_pred CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCC
Confidence 44455667788899999999999999887643 35999999887654 3344455677899999999887 4677777
Q ss_pred EEEEe--CCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC-CCcEEEEEC--CCCeEEEEecCcCccEEEEEe
Q 012799 174 LQCWD--PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDV--SLRKCVICLSGHTLAVTCVKW 248 (456)
Q Consensus 174 i~vwd--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~ 248 (456)
..+|. ...+... .+..+........|+| +|+.++..+. +|...+|.+ .+++... +...........|
T Consensus 264 ~~Iy~~d~~~~~~~--~lt~~~~~~~~~~wSp-----DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~ 335 (427)
T PRK02889 264 SQIYTVNADGSGLR--RLTQSSGIDTEPFFSP-----DGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRI 335 (427)
T ss_pred ceEEEEECCCCCcE--ECCCCCCCCcCeEEcC-----CCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEE
Confidence 66665 4444422 3444555566788998 9998887654 455566654 4444322 2222233446789
Q ss_pred CCCC-eEEEEeCCC---cEEEEECCCCeEEEEeecCCcceEEEEecCcc
Q 012799 249 GGDG-VIYTGSQDC---TIKVWETTQGKLIRELKGHGHWVNSLALSTEY 293 (456)
Q Consensus 249 ~~~~-~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~ 293 (456)
+|+| .++..+.++ .|.+||+.+++... +.. ........|+|++
T Consensus 336 SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg 382 (427)
T PRK02889 336 SPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNG 382 (427)
T ss_pred CCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCC
Confidence 9999 666555543 69999998876543 322 2234567788873
No 231
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.62 E-value=1.5e-13 Score=113.87 Aligned_cols=302 Identities=16% Similarity=0.244 Sum_probs=190.8
Q ss_pred CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc-----ceeEEecCC------------CCEEEEEEcCCC--CEEEE
Q 012799 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-----PMFKCTGHK------------NWVLCIAWSADG--KHLVS 167 (456)
Q Consensus 107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~s 167 (456)
..+-|.++.|...|.+||+|..+|.|.++.-+... ....++.|. ..|..+.|.+++ ..++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 35678999999999999999999999999754322 122333342 458889999855 46777
Q ss_pred EeCCCeEEEEeCCCCCCcc-----------------------------------ccccCcccceEEEEecccccCCCCCE
Q 012799 168 GSKAGELQCWDPQTGKPSG-----------------------------------NPLSGHKKWITGISWEPVHLNAPCRR 212 (456)
Q Consensus 168 ~~~dg~i~vwd~~~~~~~~-----------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~ 212 (456)
.+.|.+|++|.+....... ..-..|.-.|.++.+.. |+..
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-----D~Et 178 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-----DKET 178 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-----ccce
Confidence 8899999999886432111 01124555666666655 7777
Q ss_pred EEEEeCCCcEEEEECCCCe---EEEEecCcC-----ccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEE----Eee
Q 012799 213 FVSASKDGDARIWDVSLRK---CVICLSGHT-----LAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIR----ELK 278 (456)
Q Consensus 213 l~~~~~dg~i~iwd~~~~~---~~~~~~~~~-----~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~----~~~ 278 (456)
++++. |=.|.+|+++--. .+..++.+. .-|++..|+|.. .++-.+..|+|++.|++...+.. .+.
T Consensus 179 ~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 179 FLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred Eeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 77664 5789999986432 233333332 458889999966 78888999999999998643221 111
Q ss_pred cC------------CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEec
Q 012799 279 GH------------GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP 346 (456)
Q Consensus 279 ~~------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 346 (456)
.. -..|..+.|++. |+++++- +=-+|++||+
T Consensus 258 epedp~~rsffseiIsSISDvKFs~s------------------------------------GryilsR-Dyltvk~wD~ 300 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHS------------------------------------GRYILSR-DYLTVKLWDL 300 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccC------------------------------------CcEEEEe-ccceeEEEec
Confidence 11 123445555554 4555543 3368999998
Q ss_pred CCCCCCccccccccc------------c---EeEEEECCCCCEEEEEECCCcEEEEeCCCCeEE-EEEecccc-----cE
Q 012799 347 AVSKQPKTRMTGHQQ------------L---VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV-AVFRGHVG-----PV 405 (456)
Q Consensus 347 ~~~~~~~~~~~~~~~------------~---v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~-----~v 405 (456)
.....++....-|.. . -..++|+.++.+++||+..+.+++++...|... .++..... .+
T Consensus 301 nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~ 380 (433)
T KOG1354|consen 301 NMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV 380 (433)
T ss_pred cccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCccccc
Confidence 777766665555532 1 245789999999999999999999997665432 22221111 11
Q ss_pred EEEEeeeeeeec-CCCCceeeecccccccceeEecCCCeEEEeeCCC
Q 012799 406 YQIRFELIYCFR-YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS 451 (456)
Q Consensus 406 ~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg 451 (456)
..+..-....-. ..+......+....+...+|+|..+.+|.+..++
T Consensus 381 ~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnn 427 (433)
T KOG1354|consen 381 LKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATNN 427 (433)
T ss_pred ccceeeecCCCccccccccchhhhhhHHHhhccCCccceeeeeecCc
Confidence 111110000000 0111333445555667779999999998877653
No 232
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=2.4e-13 Score=126.57 Aligned_cols=224 Identities=21% Similarity=0.194 Sum_probs=148.3
Q ss_pred ccccccccCCcccEEEEEECCCCCeEEEEECC---CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEE-EEeCCC-
Q 012799 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGD---TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAG- 172 (456)
Q Consensus 98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d---~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg- 172 (456)
+...+.+..|...+.+.+|+|||+.|+..+.+ ..|++||+.+++.. .+....+...+++|+|||+.|+ +.+.+|
T Consensus 193 g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~ 271 (433)
T PRK04922 193 GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGN 271 (433)
T ss_pred CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCC
Confidence 44556677888899999999999999988743 46999999877643 3334455566889999999776 445555
Q ss_pred -eEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC-CCc--EEEEECCCCeEEEEecCcCccEEEEEe
Q 012799 173 -ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGD--ARIWDVSLRKCVICLSGHTLAVTCVKW 248 (456)
Q Consensus 173 -~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~ 248 (456)
.|.+||+.+++.. .+..+.......+|+| +|+.++..+. +|. |+++|+.+++... +..+.......+|
T Consensus 272 ~~Iy~~d~~~g~~~--~lt~~~~~~~~~~~sp-----DG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~ 343 (433)
T PRK04922 272 PEIYVMDLGSRQLT--RLTNHFGIDTEPTWAP-----DGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASV 343 (433)
T ss_pred ceEEEEECCCCCeE--ECccCCCCccceEECC-----CCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEE
Confidence 5999999887653 2444545556788988 8998887764 444 7777776665433 2223334557899
Q ss_pred CCCC-eEEEEeCCC---cEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhc
Q 012799 249 GGDG-VIYTGSQDC---TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324 (456)
Q Consensus 249 ~~~~-~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (456)
+|+| .++..+.++ .|.+||+.+++.. .+. +........|+|+
T Consensus 344 SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spd-------------------------------- 389 (433)
T PRK04922 344 SPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPN-------------------------------- 389 (433)
T ss_pred CCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCC--------------------------------
Confidence 9999 665544332 5999999887654 333 2223445677777
Q ss_pred cCCCCCEEEEEeC---CCcEEEEecCCCCCCccccccccccEeEEEECC
Q 012799 325 KGNAPERLVSGSD---DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP 370 (456)
Q Consensus 325 ~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp 370 (456)
++.++..+. .+.|+++++.. .....+..+.+.+...+|+|
T Consensus 390 ----G~~i~~~s~~~g~~~L~~~~~~g--~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 390 ----GSMVLYATREGGRGVLAAVSTDG--RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ----CCEEEEEEecCCceEEEEEECCC--CceEEcccCCCCCCCCccCC
Confidence 444555544 23577777533 23333444556677778876
No 233
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=8.1e-13 Score=123.22 Aligned_cols=185 Identities=21% Similarity=0.211 Sum_probs=130.0
Q ss_pred ccccccccCCcccEEEEEECCCCCeEEEEEC---CCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEE-EEeCCCe
Q 012799 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSG---DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGE 173 (456)
Q Consensus 98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~---d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~ 173 (456)
+...+.+..|...+.+.+|+|||+.|+..+. +..|++||+.+++. ..+..+.+.+...+|+|||+.|+ +.+.++.
T Consensus 191 g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~ 269 (435)
T PRK05137 191 GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGN 269 (435)
T ss_pred CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCC
Confidence 4455677889999999999999999988763 46899999988764 34555677788999999999876 4555554
Q ss_pred --EEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC-CC--cEEEEECCCCeEEEEecCcCccEEEEEe
Q 012799 174 --LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DG--DARIWDVSLRKCVICLSGHTLAVTCVKW 248 (456)
Q Consensus 174 --i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 248 (456)
|.+||+.++... .+..+........|+| +|+.++..+. +| .|+++|+..++... +..+...+....|
T Consensus 270 ~~Iy~~d~~~~~~~--~Lt~~~~~~~~~~~sp-----DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~ 341 (435)
T PRK05137 270 TDIYTMDLRSGTTT--RLTDSPAIDTSPSYSP-----DGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYSTPVW 341 (435)
T ss_pred ceEEEEECCCCceE--EccCCCCccCceeEcC-----CCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCcccCeEE
Confidence 777788877653 3445555667789998 8998887764 33 68888987665433 3333455677889
Q ss_pred CCCC-eEEEEeCC---CcEEEEECCCCeEEEEeecCCcceEEEEecCcc
Q 012799 249 GGDG-VIYTGSQD---CTIKVWETTQGKLIRELKGHGHWVNSLALSTEY 293 (456)
Q Consensus 249 ~~~~-~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~ 293 (456)
+|+| .++....+ ..|.+||+..+.. ..+.. ...+..+.|+|++
T Consensus 342 SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG 388 (435)
T PRK05137 342 SPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNG 388 (435)
T ss_pred CCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCC
Confidence 9999 66555433 3688889865443 33332 2345667788873
No 234
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.59 E-value=2.1e-13 Score=112.48 Aligned_cols=227 Identities=19% Similarity=0.217 Sum_probs=147.7
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEE-EEEeCCCcEEEEECCCCeEE
Q 012799 155 CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCV 233 (456)
Q Consensus 155 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~ 233 (456)
-.+|+|+|+++|+++.- .+.|-|.++-+... +..--..|.-+.|.. +..++ .....++.|.+|++...+-.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q--lf~cldki~yieW~a-----ds~~ilC~~yk~~~vqvwsl~Qpew~ 84 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQ--LFLCLDKIVYIEWKA-----DSCHILCVAYKDPKVQVWSLVQPEWY 84 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHH--HHHHHHHhhheeeec-----cceeeeeeeeccceEEEEEeecceeE
Confidence 35799999999999866 78888887766543 112234566777765 44444 45577889999999999988
Q ss_pred EEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChH
Q 012799 234 ICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE 311 (456)
Q Consensus 234 ~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (456)
..+.....++..+.|+|+| .|.+..-+-.|.+|.+.+.+.. -++.....+..++|++++.+........-+.+....
T Consensus 85 ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~ 163 (447)
T KOG4497|consen 85 CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS 163 (447)
T ss_pred EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-EecccccCceeEEECCCCceeeeeecccHHHHHHHH
Confidence 8888889999999999999 6677778999999999886543 344455567889999998876655444333332222
Q ss_pred HHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccccccc-ccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799 312 EMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ-QLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (456)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 390 (456)
..+.-..-..-.....+-.-+--+-++..+.+||.--.... +.-|. -.+..++|+|.+++|+.|+.|+.+|+.+--
T Consensus 164 ~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv---~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKV---YAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHF 240 (447)
T ss_pred hhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhee---eeeeeccceeEEEeccccceEEeeccchhhhhhcee
Confidence 11111111000000000001122233445678883222111 12222 458899999999999999999999998744
Q ss_pred CCe
Q 012799 391 TGK 393 (456)
Q Consensus 391 ~~~ 393 (456)
+-+
T Consensus 241 tWk 243 (447)
T KOG4497|consen 241 TWK 243 (447)
T ss_pred eee
Confidence 433
No 235
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.59 E-value=1e-12 Score=106.72 Aligned_cols=259 Identities=16% Similarity=0.207 Sum_probs=176.8
Q ss_pred CCcEEEEeCCCCccee--EEe-cCCCCEEEEEEcC---CCC-EEEEEeCCCeEEEEeCCCCCCccc--cccCccc---ce
Q 012799 129 DTTVRLWDLNTQTPMF--KCT-GHKNWVLCIAWSA---DGK-HLVSGSKAGELQCWDPQTGKPSGN--PLSGHKK---WI 196 (456)
Q Consensus 129 d~~v~vwd~~~~~~~~--~~~-~~~~~v~~~~~~~---~~~-~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~---~v 196 (456)
.|.+.+|++...+... +++ .....+..+.|.. +|. .++-+..+|.|.++.......... .+..-.- ..
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4678888887654332 111 2345567777763 455 556667789999997654332210 1111111 23
Q ss_pred EEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEE--EecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCC-C
Q 012799 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI--CLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQ-G 271 (456)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~-~ 271 (456)
.++.|++ .+..++++..+|.+.+-+........ ..+.|.-+..-..|+... .+++|+.|+.+..||+|. +
T Consensus 125 lslD~~~-----~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~ 199 (339)
T KOG0280|consen 125 LSLDIST-----SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK 199 (339)
T ss_pred eEEEeec-----cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence 4667777 67789999999999977665554443 778899999999988654 899999999999999993 3
Q ss_pred eEEEE-eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC
Q 012799 272 KLIRE-LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK 350 (456)
Q Consensus 272 ~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 350 (456)
+.+.. .+.|...|.++.-+|. .+.++++|+.|-.|++||.++-.
T Consensus 200 ~~i~~n~kvH~~GV~SI~ss~~-----------------------------------~~~~I~TGsYDe~i~~~DtRnm~ 244 (339)
T KOG0280|consen 200 TFIWHNSKVHTSGVVSIYSSPP-----------------------------------KPTYIATGSYDECIRVLDTRNMG 244 (339)
T ss_pred ceeeecceeeecceEEEecCCC-----------------------------------CCceEEEeccccceeeeehhccc
Confidence 44433 4568888999988775 36679999999999999998777
Q ss_pred CCccccccccccEeEEEECCC--CCEEEEEECCCcEEEEeCCCCe-----EEEEEecccccEEEEEeeeeeeecCCCCce
Q 012799 351 QPKTRMTGHQQLVNHVYFSPD--GQWVASASFDKSIKLWNGTTGK-----FVAVFRGHVGPVYQIRFELIYCFRYPSNFY 423 (456)
Q Consensus 351 ~~~~~~~~~~~~v~~~~~sp~--~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~ 423 (456)
+++.... -.+.|..+.++|. +++|+++...| .+|-+...+. .+...+.|.+-+..-
T Consensus 245 kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~--------------- 307 (339)
T KOG0280|consen 245 KPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGG--------------- 307 (339)
T ss_pred CccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeecc---------------
Confidence 7666443 3478999999994 44566666666 6777776542 234455666666555
Q ss_pred eeecccccccceeEecCCCeEEEee-CCCceE-EC
Q 012799 424 CVVDMSCCMSLYSWSADSRLLLSGS-KDSTLK-VT 456 (456)
Q Consensus 424 ~~~~~~~~~~~~~~s~dg~~l~s~s-~Dg~v~-iW 456 (456)
.|......|+|++ .|..++ +|
T Consensus 308 ------------DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 308 ------------DWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred ------------ccccccceeeeeeccccceeeee
Confidence 5644456788875 577755 66
No 236
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.58 E-value=7.3e-13 Score=107.97 Aligned_cols=154 Identities=26% Similarity=0.402 Sum_probs=109.6
Q ss_pred EEEEECCCCCeEEEEEC----------CCcEEEEeCCC-CcceeEEe-cCCCCEEEEEEcCCCCEEEEE--eCCCeEEEE
Q 012799 112 LSVAFSPDGRQLASGSG----------DTTVRLWDLNT-QTPMFKCT-GHKNWVLCIAWSADGKHLVSG--SKAGELQCW 177 (456)
Q Consensus 112 ~~~~~s~~~~~l~~~~~----------d~~v~vwd~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~--~~dg~i~vw 177 (456)
..+.|+|+|++|+.-.. -+...+|.++. +.+...+. ...++|.+++|+|+|+.+|+. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45789999987765432 12355555532 23344443 245579999999999987654 456799999
Q ss_pred eCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC---CcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-e
Q 012799 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD---GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-V 253 (456)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~ 253 (456)
|++ ++.+. .-+...+..+.|+| +|+++++++.+ |.|.+||.++.+.+..... ..++.++|+|+| +
T Consensus 89 d~~-~~~i~---~~~~~~~n~i~wsP-----~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 89 DVK-GKKIF---SFGTQPRNTISWSP-----DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRY 157 (194)
T ss_pred cCc-ccEeE---eecCCCceEEEECC-----CCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCE
Confidence 997 43332 22356678899999 99999998754 6799999998888877642 347899999999 7
Q ss_pred EEEEeC------CCcEEEEECCCCeEEEEe
Q 012799 254 IYTGSQ------DCTIKVWETTQGKLIREL 277 (456)
Q Consensus 254 l~~~~~------dg~i~iwd~~~~~~~~~~ 277 (456)
++++.. |+.++||+.. |+.+...
T Consensus 158 ~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 158 LATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEEEEeccceeccccEEEEEec-CeEeEec
Confidence 776654 7889999985 5655543
No 237
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.58 E-value=2.9e-13 Score=127.77 Aligned_cols=267 Identities=19% Similarity=0.235 Sum_probs=184.4
Q ss_pred cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe------cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 012799 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT------GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 181 (456)
-+++++.++-. ++|.+|. --.|.+||+.++..+..+. .|...-.-. -.+.+++++..-+.+..=+...
T Consensus 7 ~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~---l~~~~~v~~~~~~~v~~~~~~~ 80 (967)
T KOG0974|consen 7 LGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK---LLSGKIVTCAKSDEVYVKEASN 80 (967)
T ss_pred cccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccce---eccceEEEEEeecceeecchhh
Confidence 34445555443 5666664 3469999999876554432 331000000 0233455554433333322211
Q ss_pred CCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCcc----EEEEEeCCCC-eEEE
Q 012799 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA----VTCVKWGGDG-VIYT 256 (456)
Q Consensus 182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----v~~~~~~~~~-~l~~ 256 (456)
. ........+....+.. ....++.+..+..+.+||...+.....+...... ..-+..+++. ++++
T Consensus 81 ~-----~~~~~s~wi~g~~l~~-----e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~ 150 (967)
T KOG0974|consen 81 Q-----IIERFSDWIFGAKLFE-----ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIAS 150 (967)
T ss_pred h-----hhhhccccccccchhh-----hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEe
Confidence 1 1222233333332222 5578888999999999999877666555432211 1112234455 8899
Q ss_pred EeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe
Q 012799 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (456)
Q Consensus 257 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 336 (456)
|+.-+.|.+|+....+.-..+.+|.+.+.++.++.+ +.++++.+
T Consensus 151 gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~d------------------------------------g~~i~s~S 194 (967)
T KOG0974|consen 151 GSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLD------------------------------------GRYIASVS 194 (967)
T ss_pred ccccccEEEEeccccCCcceecccCCceEEEEEccC------------------------------------CcEEEEEe
Confidence 999999999998754444468889999999999887 67799999
Q ss_pred CCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccc-cEEEEEeeeeee
Q 012799 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG-PVYQIRFELIYC 415 (456)
Q Consensus 337 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~i~~~~~~~ 415 (456)
+|.++++|++.+.........+|...|..++|.|+ .+++++.|-+.++|+. .++.+.++.+|.+ .++.+
T Consensus 195 dDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~------- 264 (967)
T KOG0974|consen 195 DDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKI------- 264 (967)
T ss_pred cCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEE-------
Confidence 99999999999888777677899999999999998 8999999999999975 5666668888865 67787
Q ss_pred ecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 416 FRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+..++...++|++.||.+++|
T Consensus 265 --------------------~~~~~~~~~vT~g~Ds~lk~~ 285 (967)
T KOG0974|consen 265 --------------------AVPIGVIIKVTGGNDSTLKLW 285 (967)
T ss_pred --------------------EEcCCceEEEeeccCcchhhh
Confidence 778888899999999999988
No 238
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.57 E-value=3.4e-13 Score=111.88 Aligned_cols=249 Identities=16% Similarity=0.231 Sum_probs=183.9
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeC-CCCcceeEE-ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 012799 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL-NTQTPMFKC-TGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~-~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 177 (456)
..+.++||.+.|++...-|...-+++.+.|.+++||-- +.++--..+ .....+++++.+.++...|+.|-..|++.-+
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 35667899999999999998888999999999999953 333322222 2346789999999999999999999999888
Q ss_pred eCCCC---CCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeE
Q 012799 178 DPQTG---KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVI 254 (456)
Q Consensus 178 d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l 254 (456)
.+... -...+....|...+..+.|+- ....+++.+.|..+.---.+.+..+..+.- ...-+++.+.-. ..
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~-----~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~-~~ 168 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSL-----THEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL-YA 168 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecC-----CceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE-EE
Confidence 66432 112235677899999999876 557889999887765444444433221110 001111111111 45
Q ss_pred EEEeCCCcEEEEEC--CCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE
Q 012799 255 YTGSQDCTIKVWET--TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (456)
Q Consensus 255 ~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 332 (456)
+.|...|.|..-.+ ..-.++.++.+|...+.+++|.+. ...+
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~------------------------------------~~~L 212 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG------------------------------------QRLL 212 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC------------------------------------CcEE
Confidence 55666666655443 345678889999999999999987 5569
Q ss_pred EEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCC
Q 012799 333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391 (456)
Q Consensus 333 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 391 (456)
++|..|..+.+||+-........+.+|...|..+..-+--+.+.+++.||.|.+|+.+.
T Consensus 213 fSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 213 FSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred EeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 99999999999998877777778889999999999988888999999999999999764
No 239
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=3.8e-13 Score=109.62 Aligned_cols=144 Identities=18% Similarity=0.348 Sum_probs=98.8
Q ss_pred EEEEeCCCC-eEE-EEeC---------CCcEEEEECCC-CeEEEEeec-CCcceEEEEecCcceeeeccccCCCCccCCh
Q 012799 244 TCVKWGGDG-VIY-TGSQ---------DCTIKVWETTQ-GKLIRELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSP 310 (456)
Q Consensus 244 ~~~~~~~~~-~l~-~~~~---------dg~i~iwd~~~-~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (456)
..+.|+++| .|+ .... -|...+|.++. +.....+.. ..++|.+++|+|++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g----------------- 71 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNG----------------- 71 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCC-----------------
Confidence 457788888 333 2221 13345555532 234444433 34579999999983
Q ss_pred HHHHHHHHhhhhhccCCCCCEE--EEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECC---CcEE
Q 012799 311 EEMKKAALERYNKIKGNAPERL--VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD---KSIK 385 (456)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l--~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d---g~i~ 385 (456)
+.+ +.|..++.+.+||++ ...+..+ +...++.+.|+|+|++|++++.+ |.+.
T Consensus 72 -------------------~~favi~g~~~~~v~lyd~~--~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~ 128 (194)
T PF08662_consen 72 -------------------NEFAVIYGSMPAKVTLYDVK--GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLE 128 (194)
T ss_pred -------------------CEEEEEEccCCcccEEEcCc--ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEE
Confidence 334 345567899999975 2223333 35668899999999999998744 6799
Q ss_pred EEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC------CCceEEC
Q 012799 386 LWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK------DSTLKVT 456 (456)
Q Consensus 386 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~------Dg~v~iW 456 (456)
+||+++.+.+.... |. .+..+ +|+|||++|++++. |+.++||
T Consensus 129 ~wd~~~~~~i~~~~-~~-~~t~~---------------------------~WsPdGr~~~ta~t~~r~~~dng~~Iw 176 (194)
T PF08662_consen 129 FWDVRKKKKISTFE-HS-DATDV---------------------------EWSPDGRYLATATTSPRLRVDNGFKIW 176 (194)
T ss_pred EEECCCCEEeeccc-cC-cEEEE---------------------------EEcCCCCEEEEEEeccceeccccEEEE
Confidence 99999998887765 33 35667 99999999999875 6777777
No 240
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=1.2e-12 Score=118.78 Aligned_cols=267 Identities=13% Similarity=0.194 Sum_probs=189.4
Q ss_pred CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc---------------ceeEEecCCCCEEEEEEcCCCCEEEEEeCC
Q 012799 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT---------------PMFKCTGHKNWVLCIAWSADGKHLVSGSKA 171 (456)
Q Consensus 107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 171 (456)
.+....|++|+....++|+|+.||.++|..+.+.. .-.++.||...|.-+.|+.+.+.|-++..+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 45678899999999999999999999999876532 124567999999999999999999999999
Q ss_pred CeEEEEeCCCCCCccccc-cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC
Q 012799 172 GELQCWDPQTGKPSGNPL-SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG 250 (456)
Q Consensus 172 g~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 250 (456)
|.|.+|-+-.|.-..... ...++.|.+++|.. +|..+...-.||.|.+=.+...+. ....-...-...+.|++
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-----dG~kIcIvYeDGavIVGsvdGNRI-wgKeLkg~~l~hv~ws~ 166 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-----DGTKICIVYEDGAVIVGSVDGNRI-WGKELKGQLLAHVLWSE 166 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-----CCcEEEEEEccCCEEEEeecccee-cchhcchheccceeecc
Confidence 999999998876543222 33456789999988 999999999999988766654332 11111122345788999
Q ss_pred CC-eEEEEeCCCcEEEEECCCCeEE-------EE----eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHH
Q 012799 251 DG-VIYTGSQDCTIKVWETTQGKLI-------RE----LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (456)
Q Consensus 251 ~~-~l~~~~~dg~i~iwd~~~~~~~-------~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (456)
|. .++.+-..|.+.+||....-.. .. +...+..|..+.|.... .
T Consensus 167 D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~-----------~------------- 222 (1189)
T KOG2041|consen 167 DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGP-----------Y------------- 222 (1189)
T ss_pred cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCc-----------c-------------
Confidence 98 6677778899999997532110 00 11112223333333210 0
Q ss_pred hhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECC---------CcEEEEeC
Q 012799 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD---------KSIKLWNG 389 (456)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d---------g~i~iwd~ 389 (456)
....++...++.+-.+|.+.+..-.+...+...-.+ -.+....|+++|..||.++.| +.|.+|.
T Consensus 223 ----~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys- 295 (1189)
T KOG2041|consen 223 ----QPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS- 295 (1189)
T ss_pred ----ccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEec-
Confidence 011234567999999999998875555555544444 458899999999999999865 3577776
Q ss_pred CCCeEEEEEecccccEEEEEe
Q 012799 390 TTGKFVAVFRGHVGPVYQIRF 410 (456)
Q Consensus 390 ~~~~~~~~~~~~~~~v~~i~~ 410 (456)
.-|..+.+++.....|++++|
T Consensus 296 p~G~i~gtlkvpg~~It~lsW 316 (1189)
T KOG2041|consen 296 PYGHIVGTLKVPGSCITGLSW 316 (1189)
T ss_pred cchhheEEEecCCceeeeeEE
Confidence 457888888888888888844
No 241
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=2.5e-12 Score=113.37 Aligned_cols=305 Identities=16% Similarity=0.178 Sum_probs=181.8
Q ss_pred EEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeC-----------CCeEEEEeCC
Q 012799 112 LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-----------AGELQCWDPQ 180 (456)
Q Consensus 112 ~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----------dg~i~vwd~~ 180 (456)
+-+.|||.|.||+|-...| |.+|--.+-..++.+. |. .|.-+.|||..+||+|=+. ...++|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 5689999999999998776 9999876666666654 54 4889999999999998542 2579999999
Q ss_pred CCCCcccccc--CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEE-
Q 012799 181 TGKPSGNPLS--GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTG- 257 (456)
Q Consensus 181 ~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~- 257 (456)
+|........ .....-.-..|+. |++++|.... ..|.||+..+..++-.-.-.-..|....|+|.+.+++-
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~-----DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYw 364 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSH-----DDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYW 364 (698)
T ss_pred ccchhcceeccCCCccccceEEecc-----CCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEE
Confidence 9987653222 1111223356666 8889888777 56999998775444333334566888899998733321
Q ss_pred e--C---CCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCc-----------cCChH-----HHHHH
Q 012799 258 S--Q---DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ-----------YSSPE-----EMKKA 316 (456)
Q Consensus 258 ~--~---dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~-----~~~~~ 316 (456)
. . -..+.+-.+.+++.+++...++-.-..+.|...+.+.+.-.+...+. +.... .....
T Consensus 365 tpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel 444 (698)
T KOG2314|consen 365 TPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL 444 (698)
T ss_pred cccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec
Confidence 1 1 13466666666666655544443334444544444433322211110 00000 00000
Q ss_pred HHhhhhhccCCCCCEEEEEeC---CCcEEEEecCC-CCCCccccccccccEeEEEECCCCCEEEEE---ECCCcEEEEeC
Q 012799 317 ALERYNKIKGNAPERLVSGSD---DFTMFLWEPAV-SKQPKTRMTGHQQLVNHVYFSPDGQWVASA---SFDKSIKLWNG 389 (456)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~---~~dg~i~iwd~ 389 (456)
.-......+.+.|+.+++-+. ..++.+|.+.. ...+.....-.....+.+.|+|.|++++.+ |..|.+.++|+
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~ 524 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDT 524 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEec
Confidence 001112224455666554433 45788888763 222222222223557889999999998875 45688999998
Q ss_pred CCCeEEEEE-ecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCce
Q 012799 390 TTGKFVAVF-RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL 453 (456)
Q Consensus 390 ~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v 453 (456)
.-..+..+- ..|. ..+.+ .|.|.|+|++|++.-...
T Consensus 525 ~~a~~k~~~~~eh~-~at~v---------------------------eWDPtGRYvvT~ss~wrh 561 (698)
T KOG2314|consen 525 DYADLKDTASPEHF-AATEV---------------------------EWDPTGRYVVTSSSSWRH 561 (698)
T ss_pred chhhhhhccCcccc-ccccc---------------------------eECCCCCEEEEeeehhhh
Confidence 742222111 1122 22334 899999999999875543
No 242
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.6e-11 Score=114.71 Aligned_cols=228 Identities=20% Similarity=0.231 Sum_probs=142.9
Q ss_pred cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCCCccccccCcccceEEEEecccccC
Q 012799 131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207 (456)
Q Consensus 131 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 207 (456)
.|.++|.+.+. ...+..+...+....|+|||+.|+..+.+ ..|.+|++.+++... +....+.+....|+|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--l~~~~g~~~~~~~Sp---- 252 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--ITNFEGLNGAPAWSP---- 252 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--ccCCCCCcCCeEECC----
Confidence 47788887544 45555677889999999999999876644 369999998886542 233334455788998
Q ss_pred CCCCEEEE-EeCCC--cEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe-CCC--cEEEEECCCCeEEEEeecC
Q 012799 208 APCRRFVS-ASKDG--DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS-QDC--TIKVWETTQGKLIRELKGH 280 (456)
Q Consensus 208 ~~~~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~ 280 (456)
+|+.++. .+.+| .|++||+.+++.. .+..+........|+|+| .++..+ .+| .|+++|+.+++.... ...
T Consensus 253 -DG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~ 329 (430)
T PRK00178 253 -DGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFV 329 (430)
T ss_pred -CCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecC
Confidence 8888874 44444 6888899887644 344455556678899998 554444 333 577788877764332 212
Q ss_pred CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC-CC--cEEEEecCCCCCCccccc
Q 012799 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD-DF--TMFLWEPAVSKQPKTRMT 357 (456)
Q Consensus 281 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~ 357 (456)
........|+|+ ++.++..+. ++ .|.++|+..+.... +.
T Consensus 330 ~~~~~~~~~Spd------------------------------------g~~i~~~~~~~~~~~l~~~dl~tg~~~~--lt 371 (430)
T PRK00178 330 GNYNARPRLSAD------------------------------------GKTLVMVHRQDGNFHVAAQDLQRGSVRI--LT 371 (430)
T ss_pred CCCccceEECCC------------------------------------CCEEEEEEccCCceEEEEEECCCCCEEE--cc
Confidence 222334566666 445655543 33 57888876654322 21
Q ss_pred cccccEeEEEECCCCCEEEEEECC---CcEEEEeCCCCeEEEEEecccccEEEE
Q 012799 358 GHQQLVNHVYFSPDGQWVASASFD---KSIKLWNGTTGKFVAVFRGHVGPVYQI 408 (456)
Q Consensus 358 ~~~~~v~~~~~sp~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i 408 (456)
. ........|+|||++|+..+.+ ..+.++++. |.....+..+.+.+...
T Consensus 372 ~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p 423 (430)
T PRK00178 372 D-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREP 423 (430)
T ss_pred C-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCC
Confidence 1 1122346899999998776644 346677764 44444454444555555
No 243
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.52 E-value=1.3e-11 Score=115.38 Aligned_cols=229 Identities=20% Similarity=0.224 Sum_probs=147.8
Q ss_pred CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCCCccccccCcccceEEEEeccccc
Q 012799 130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206 (456)
Q Consensus 130 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 206 (456)
..|.++|.... ....+..+...+...+|+|||++|+.+..+ ..|.+||+.+++... +..+...+.+++|+|
T Consensus 170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--~~~~~~~~~~~~~sp--- 243 (417)
T TIGR02800 170 YELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--VASFPGMNGAPAFSP--- 243 (417)
T ss_pred ceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--eecCCCCccceEECC---
Confidence 36888887644 345555677789999999999999987654 479999998876432 334455567788998
Q ss_pred CCCCCEEEEE-eCCC--cEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeC-CC--cEEEEECCCCeEEEEeec
Q 012799 207 NAPCRRFVSA-SKDG--DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ-DC--TIKVWETTQGKLIRELKG 279 (456)
Q Consensus 207 ~~~~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-dg--~i~iwd~~~~~~~~~~~~ 279 (456)
+++.|+.. +.++ .|++||+.++... .+..+........|+|++ .++..+. ++ .|+++|+.+++.. .+..
T Consensus 244 --Dg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~ 319 (417)
T TIGR02800 244 --DGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTF 319 (417)
T ss_pred --CCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eeec
Confidence 88877654 4444 5889998877543 344444455577899998 5655443 33 5888888776543 3333
Q ss_pred CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC---cEEEEecCCCCCCcccc
Q 012799 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF---TMFLWEPAVSKQPKTRM 356 (456)
Q Consensus 280 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~ 356 (456)
+........|+|+ +.+++.++.++ .|.+||+..... ..+
T Consensus 320 ~~~~~~~~~~spd------------------------------------g~~i~~~~~~~~~~~i~~~d~~~~~~--~~l 361 (417)
T TIGR02800 320 RGGYNASPSWSPD------------------------------------GDLIAFVHREGGGFNIAVMDLDGGGE--RVL 361 (417)
T ss_pred CCCCccCeEECCC------------------------------------CCEEEEEEccCCceEEEEEeCCCCCe--EEc
Confidence 4455666777777 55577776665 788888765332 222
Q ss_pred ccccccEeEEEECCCCCEEEEEECCC---cEEEEeCCCCeEEEEEecccccEEEE
Q 012799 357 TGHQQLVNHVYFSPDGQWVASASFDK---SIKLWNGTTGKFVAVFRGHVGPVYQI 408 (456)
Q Consensus 357 ~~~~~~v~~~~~sp~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~i 408 (456)
... .......|+|||++|+..+.++ .+.+.+. +++....+..+.+.+..+
T Consensus 362 ~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~ 414 (417)
T TIGR02800 362 TDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNGDVREP 414 (417)
T ss_pred cCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCCCcCCC
Confidence 221 2234568999999988877654 3555553 455445454443344333
No 244
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.51 E-value=2.3e-11 Score=111.75 Aligned_cols=258 Identities=14% Similarity=0.097 Sum_probs=162.7
Q ss_pred CCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEE-EEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceE
Q 012799 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC-IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWIT 197 (456)
Q Consensus 119 ~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~ 197 (456)
++..++.++.++.+..+|..+++.+...... ..+.+ ... .+..++.++.+|.+..||.++|+.+.+.... ....
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~--~~~~ 178 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRV--TPAL 178 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccC--CCce
Confidence 4667888889999999999999987765432 22221 111 3456777888999999999999875422111 1111
Q ss_pred EEE--ecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCc----c------E-EEEEeCCCCeEEEEeCCCcEE
Q 012799 198 GIS--WEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL----A------V-TCVKWGGDGVIYTGSQDCTIK 264 (456)
Q Consensus 198 ~~~--~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~------v-~~~~~~~~~~l~~~~~dg~i~ 264 (456)
.+. -.|.. .+..++.+..+|.+..+|.++++.+........ . + ....+ .++.+++++.+|.++
T Consensus 179 ~~~~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~ 254 (377)
T TIGR03300 179 TLRGSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVA 254 (377)
T ss_pred eecCCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEE
Confidence 110 11111 224677888899999999999887654321100 0 0 01111 245888889999999
Q ss_pred EEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEE
Q 012799 265 VWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW 344 (456)
Q Consensus 265 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 344 (456)
.||..+++.+....... ...... .+..++.++.+|.++.+
T Consensus 255 a~d~~tG~~~W~~~~~~--~~~p~~--------------------------------------~~~~vyv~~~~G~l~~~ 294 (377)
T TIGR03300 255 ALDLRSGRVLWKRDASS--YQGPAV--------------------------------------DDNRLYVTDADGVVVAL 294 (377)
T ss_pred EEECCCCcEEEeeccCC--ccCceE--------------------------------------eCCEEEEECCCCeEEEE
Confidence 99999998776554110 011111 14568888899999999
Q ss_pred ecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCcee
Q 012799 345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYC 424 (456)
Q Consensus 345 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~ 424 (456)
|..+++..............+... .+..|++++.+|.++++|..+|+.+..++.+...+..-.
T Consensus 295 d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp--------------- 357 (377)
T TIGR03300 295 DRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPP--------------- 357 (377)
T ss_pred ECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCC---------------
Confidence 987665433221111111222222 466889999999999999999999998886665433220
Q ss_pred eecccccccceeEecCCCeEEEeeCCCceEE
Q 012799 425 VVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 425 ~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i 455 (456)
.+ .+ +.|+.++.||.|+.
T Consensus 358 -----------~~-~~-~~l~v~~~dG~l~~ 375 (377)
T TIGR03300 358 -----------VV-VG-DGLLVQTRDGDLYA 375 (377)
T ss_pred -----------EE-EC-CEEEEEeCCceEEE
Confidence 22 23 45888999999875
No 245
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.51 E-value=2.4e-12 Score=106.96 Aligned_cols=253 Identities=18% Similarity=0.312 Sum_probs=165.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC----ccccccCc------------ccceEEEEecccccCCCCCE
Q 012799 149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP----SGNPLSGH------------KKWITGISWEPVHLNAPCRR 212 (456)
Q Consensus 149 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~------------~~~v~~~~~~~~~~~~~~~~ 212 (456)
...-|.++.|...|.+|++|..+|.|.++.-..... .......| ...|..+.|.+.. +...
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~---n~a~ 100 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDG---NLAE 100 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCC---CccE
Confidence 345688999999999999999999999996543221 11112222 2457788888743 6678
Q ss_pred EEEEeCCCcEEEEECCCCeE-----------------------------------EEEe-cCcCccEEEEEeCCCCeEEE
Q 012799 213 FVSASKDGDARIWDVSLRKC-----------------------------------VICL-SGHTLAVTCVKWGGDGVIYT 256 (456)
Q Consensus 213 l~~~~~dg~i~iwd~~~~~~-----------------------------------~~~~-~~~~~~v~~~~~~~~~~l~~ 256 (456)
++..+.|.+|++|-+..... .+.+ .+|.--|.++.++.|+..+.
T Consensus 101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l 180 (433)
T KOG1354|consen 101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL 180 (433)
T ss_pred EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe
Confidence 89999999999998743211 0111 25777899999999986666
Q ss_pred EeCCCcEEEEECCCCeE---EEEeecC-----CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCC
Q 012799 257 GSQDCTIKVWETTQGKL---IRELKGH-----GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (456)
Q Consensus 257 ~~~dg~i~iwd~~~~~~---~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (456)
.+.|=.|.+|++.--.. +..++.+ ...|++..|+|. .
T Consensus 181 SADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~-----------------------------------~ 225 (433)
T KOG1354|consen 181 SADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH-----------------------------------H 225 (433)
T ss_pred eccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh-----------------------------------H
Confidence 67788899999864321 1111211 123555556654 2
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCcc---------------ccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC-CC
Q 012799 329 PERLVSGSDDFTMFLWEPAVSKQPKT---------------RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT-TG 392 (456)
Q Consensus 329 ~~~l~~~~~dg~i~iwd~~~~~~~~~---------------~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~-~~ 392 (456)
.+.++.++..|+|++-|++.....-. .+..--..|..+.|+++|+|+++-+. -+|++||+. ..
T Consensus 226 cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~ 304 (433)
T KOG1354|consen 226 CNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEA 304 (433)
T ss_pred ccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccC
Confidence 56688999999999999885432111 11122246889999999999998643 579999994 46
Q ss_pred eEEEEEecccc---cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799 393 KFVAVFRGHVG---PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 393 ~~~~~~~~~~~---~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i 455 (456)
+++.++.-|.. .+.++ | ++........ .+|+.++.+++|||..+..++
T Consensus 305 ~pv~t~~vh~~lr~kLc~l-Y---------EnD~IfdKFe-----c~~sg~~~~v~TGsy~n~frv 355 (433)
T KOG1354|consen 305 KPVETYPVHEYLRSKLCSL-Y---------ENDAIFDKFE-----CSWSGNDSYVMTGSYNNVFRV 355 (433)
T ss_pred CcceEEeehHhHHHHHHHH-h---------hccchhheeE-----EEEcCCcceEecccccceEEE
Confidence 67777766643 11111 0 0000000111 189999999999999888776
No 246
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.7e-11 Score=114.08 Aligned_cols=228 Identities=17% Similarity=0.166 Sum_probs=140.6
Q ss_pred cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCCCCccccccCcccceEEEEecccccC
Q 012799 131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA-G--ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207 (456)
Q Consensus 131 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 207 (456)
.+.++|.+.... ..+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++... +...........|+|
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--lt~~~g~~~~~~wSP---- 271 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--VTSFPGINGAPRFSP---- 271 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--ecCCCCCcCCeeECC----
Confidence 577778765443 4555677789999999999998876543 2 58899998876432 222233345678988
Q ss_pred CCCCEEEE-EeCCCc--EEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe-CCC--cEEEEECCCCeEEEEeecC
Q 012799 208 APCRRFVS-ASKDGD--ARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS-QDC--TIKVWETTQGKLIRELKGH 280 (456)
Q Consensus 208 ~~~~~l~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~ 280 (456)
+|+.|+. .+.+|. |+++|+.+++.. .+..+.......+|+|+| .++..+ .++ .|.++|+.+++... +...
T Consensus 272 -DG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~ 348 (448)
T PRK04792 272 -DGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFE 348 (448)
T ss_pred -CCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecC
Confidence 8887775 455664 788888877643 444455566778999999 454433 344 46777887776433 2222
Q ss_pred CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC-CC--cEEEEecCCCCCCccccc
Q 012799 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD-DF--TMFLWEPAVSKQPKTRMT 357 (456)
Q Consensus 281 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~ 357 (456)
.......+|+|+ +++++..+. ++ .|.++|+..+.. ..+.
T Consensus 349 g~~~~~~~~SpD------------------------------------G~~l~~~~~~~g~~~I~~~dl~~g~~--~~lt 390 (448)
T PRK04792 349 GEQNLGGSITPD------------------------------------GRSMIMVNRTNGKFNIARQDLETGAM--QVLT 390 (448)
T ss_pred CCCCcCeeECCC------------------------------------CCEEEEEEecCCceEEEEEECCCCCe--EEcc
Confidence 222344577777 444555443 44 455567655432 2222
Q ss_pred cccccEeEEEECCCCCEEEEEECC-C--cEEEEeCCCCeEEEEEecccccEEEE
Q 012799 358 GHQQLVNHVYFSPDGQWVASASFD-K--SIKLWNGTTGKFVAVFRGHVGPVYQI 408 (456)
Q Consensus 358 ~~~~~v~~~~~sp~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~i 408 (456)
.. .......|+|||++|+..+.+ | .+.+++. +|.....+..+.+.+...
T Consensus 391 ~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p 442 (448)
T PRK04792 391 ST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSP 442 (448)
T ss_pred CC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCC
Confidence 11 112245799999997765544 3 3677776 566666666555555555
No 247
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.49 E-value=3.5e-13 Score=122.59 Aligned_cols=289 Identities=23% Similarity=0.289 Sum_probs=197.1
Q ss_pred cccEEEEEECCCCCeEEEEECCCcEEEEeCCCC-cceeEEecCC--CCEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCC
Q 012799 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ-TPMFKCTGHK--NWVLCIAWSAD--GKHLVSGSKAGELQCWDPQTG 182 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~-~~~~~~~~~~--~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~ 182 (456)
.+++.++..+|.|+-+|.++.-| +.+-|+... .+..-+. |. -.|-.+.|+|. -.+-++......-.+|++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 56788899999999999998776 666777643 3333332 32 34677888874 334555555566778887533
Q ss_pred --CCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe-EEEEecCcCccEEEEEeCCCC-eEEEEe
Q 012799 183 --KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-CVICLSGHTLAVTCVKWGGDG-VIYTGS 258 (456)
Q Consensus 183 --~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~-~l~~~~ 258 (456)
+.+...+.+|...|+.+.|+|.+ -..+++++.|..+..||+++.. ++.....-....+.++|+-.. .+++.+
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~----pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass 177 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQH----PDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS 177 (1081)
T ss_pred CccceEEEEecCccceeccccCCCC----CcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc
Confidence 33444678999999999999864 3589999999999999998764 444544445566778898654 777788
Q ss_pred CCCcEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC
Q 012799 259 QDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (456)
Q Consensus 259 ~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (456)
..+.|++||++.| .++..+++|...++.+.+.... ...+.+++.
T Consensus 178 hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~-----------------------------------~s~~~s~~~ 222 (1081)
T KOG0309|consen 178 HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFK-----------------------------------YSEIMSSSN 222 (1081)
T ss_pred cCCceEEEeccCCCcceEEecccceeeehHHHhhhh-----------------------------------hhhhcccCC
Confidence 8889999999876 5677888888888887776431 223889999
Q ss_pred CCcEEEEecCCCCCCccccccccccEeEEEECCCCC--EEEEEECCCcEEEEeC---------CC-CeEEEEEecccccE
Q 012799 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ--WVASASFDKSIKLWNG---------TT-GKFVAVFRGHVGPV 405 (456)
Q Consensus 338 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~s~~~dg~i~iwd~---------~~-~~~~~~~~~~~~~v 405 (456)
|+++++||..+.............+|..-++-|-|. ++.---.+..+.+++. .+ .+.+..|.||.+.|
T Consensus 223 d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V 302 (1081)
T KOG0309|consen 223 DGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVV 302 (1081)
T ss_pred CCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHH
Confidence 999999998776555544555566777777777443 3322222234444443 33 45688999999988
Q ss_pred EEEEeeeeeeecCCCCceeeecccccccceeEecCC--CeEEEeeCCCceEEC
Q 012799 406 YQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS--RLLLSGSKDSTLKVT 456 (456)
Q Consensus 406 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~s~s~Dg~v~iW 456 (456)
...-|-.... | .+.-|. -.|+|=|.|.++|+|
T Consensus 303 ~eFlWR~r~e--------~-----------~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 303 LEFLWRKRKE--------C-----------DGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred HHHhhhhccc--------c-----------cCCCCccceeEEEeecCCceEee
Confidence 6652211100 0 111122 279999999999999
No 248
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=3e-11 Score=113.01 Aligned_cols=184 Identities=21% Similarity=0.200 Sum_probs=120.8
Q ss_pred ccccccccCCcccEEEEEECCCCCeEEEEECC---CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEE-EeCCC-
Q 012799 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGD---TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVS-GSKAG- 172 (456)
Q Consensus 98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d---~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg- 172 (456)
+...+.+..+...+...+|+|||+.|+..+.+ ..|.+|++.+++... +....+.+....|+|||+.|+. ...+|
T Consensus 188 g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~ 266 (430)
T PRK00178 188 GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGN 266 (430)
T ss_pred CCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCC
Confidence 44456677788899999999999999877643 369999998876433 3334445667899999998874 44455
Q ss_pred -eEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC-CC--cEEEEECCCCeEEEEecCcCccEEEEEe
Q 012799 173 -ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DG--DARIWDVSLRKCVICLSGHTLAVTCVKW 248 (456)
Q Consensus 173 -~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 248 (456)
.|.+||+.+++... +..+........|+| +|+.++..+. +| .|+++|+.+++...... .........|
T Consensus 267 ~~Iy~~d~~~~~~~~--lt~~~~~~~~~~~sp-----Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~~~~ 338 (430)
T PRK00178 267 PEIYVMDLASRQLSR--VTNHPAIDTEPFWGK-----DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNARPRL 338 (430)
T ss_pred ceEEEEECCCCCeEE--cccCCCCcCCeEECC-----CCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccceEE
Confidence 58888998876532 444455566778888 8888876654 33 57778887776433221 2223345789
Q ss_pred CCCC-eEEEEeC-CC--cEEEEECCCCeEEEEeecCCcceEEEEecCc
Q 012799 249 GGDG-VIYTGSQ-DC--TIKVWETTQGKLIRELKGHGHWVNSLALSTE 292 (456)
Q Consensus 249 ~~~~-~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 292 (456)
+|+| .++..+. ++ .|.+||+.+++.. .+.. ........|+|+
T Consensus 339 Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spd 384 (430)
T PRK00178 339 SADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPN 384 (430)
T ss_pred CCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCC
Confidence 9999 5554443 33 5888999887643 2321 112234567776
No 249
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.47 E-value=1e-10 Score=102.52 Aligned_cols=276 Identities=18% Similarity=0.235 Sum_probs=183.1
Q ss_pred cccEEEEEECCCCCeEEEEECCC---------------cEEEEeCCCCcceeEEecCCCC--EE-EEEEcCCCCEEEEEe
Q 012799 108 TEAVLSVAFSPDGRQLASGSGDT---------------TVRLWDLNTQTPMFKCTGHKNW--VL-CIAWSADGKHLVSGS 169 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d~---------------~v~vwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~s~~ 169 (456)
...|..+.|+|.+++|.+-+..+ .+.+||+.++..+..+.....+ .. -+.|+-+.+++|-..
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv 150 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV 150 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc
Confidence 34688999999999999865433 4999999999999888766655 55 688998888877553
Q ss_pred CCCeEEEEeCCCCCCccccccCc-ccceEEEEecccccCCCCCEEEE-----EeCCCcEEEEECCCCeEEEEecCcCccE
Q 012799 170 KAGELQCWDPQTGKPSGNPLSGH-KKWITGISWEPVHLNAPCRRFVS-----ASKDGDARIWDVSLRKCVICLSGHTLAV 243 (456)
Q Consensus 170 ~dg~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v 243 (456)
...+.|+++ ++.........- ...+....|+|.. ++..|+. .+.++.+++|.+..++.+.+..-....=
T Consensus 151 -~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~---n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~ 225 (561)
T COG5354 151 -GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEG---NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSG 225 (561)
T ss_pred -cCeEEEEec-CCccccCchhhccccceeeEEecCCC---CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecc
Confidence 347999997 444322112111 2567888888853 3444554 4668899999998777665544334444
Q ss_pred EEEEeCCCC-eEEE-E----------eCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChH
Q 012799 244 TCVKWGGDG-VIYT-G----------SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE 311 (456)
Q Consensus 244 ~~~~~~~~~-~l~~-~----------~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (456)
..+.|.+.| .+++ . .....++++++..... .......++|...+|.|...
T Consensus 226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~----------------- 287 (561)
T COG5354 226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSS----------------- 287 (561)
T ss_pred cEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecccCC-----------------
Confidence 567788877 3322 1 1124678888874333 22225678899999998732
Q ss_pred HHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECC---CcEEEEe
Q 012799 312 EMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD---KSIKLWN 388 (456)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d---g~i~iwd 388 (456)
+--+++|-.+..+.++|++.. .. +...+..=+.+.|+|.+++++.++-| |.+-+||
T Consensus 288 -----------------~F~vi~g~~pa~~s~~~lr~N--l~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~ 346 (561)
T COG5354 288 -----------------RFAVISGYMPASVSVFDLRGN--LR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFD 346 (561)
T ss_pred -----------------ceeEEecccccceeecccccc--eE--EecCCcccccccccCcccEEEEecCCccccceEEec
Confidence 112556678889999997654 22 22334445678899999998887765 6899999
Q ss_pred CCCCeEEE-EEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC------CCceEEC
Q 012799 389 GTTGKFVA-VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK------DSTLKVT 456 (456)
Q Consensus 389 ~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~------Dg~v~iW 456 (456)
......+. .+.+.... -+ .|+|||+++.+... |..++||
T Consensus 347 ~~~rf~~~~~~~~~n~s--~~---------------------------~wspd~qF~~~~~ts~k~~~Dn~i~l~ 392 (561)
T COG5354 347 PAGRFKVAGAFNGLNTS--YC---------------------------DWSPDGQFYDTDTTSEKLRVDNSIKLW 392 (561)
T ss_pred cCCceEEEEEeecCCce--Ee---------------------------eccCCceEEEecCCCcccccCcceEEE
Confidence 77654433 45433221 12 68888888776632 6666666
No 250
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.47 E-value=3.3e-11 Score=108.37 Aligned_cols=257 Identities=20% Similarity=0.172 Sum_probs=158.4
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEE-CCCcEEEEeCCCCcceeEEecC-------CCCEEEEEEcCCCCEEEEEeC-
Q 012799 100 CSATIAGHTEAVLSVAFSPDGRQLASGS-GDTTVRLWDLNTQTPMFKCTGH-------KNWVLCIAWSADGKHLVSGSK- 170 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~-~d~~v~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~- 170 (456)
.+++++... .-.++++|+||++++++. ..+.+.++|.++.+++..+... ...+..+..+|....++..-.
T Consensus 70 ~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd 148 (369)
T PF02239_consen 70 VVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD 148 (369)
T ss_dssp EEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT
T ss_pred EEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc
Confidence 344454433 457899999999998776 6889999999999988887632 356788888888886665555
Q ss_pred CCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEE-eCCCcEEEEECCCCeEEEEec----CcCccEEE
Q 012799 171 AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA-SKDGDARIWDVSLRKCVICLS----GHTLAVTC 245 (456)
Q Consensus 171 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~ 245 (456)
.+.|.+-|....+.................|.| ++++++++ ..+..|-++|..+++.+..+. .|..+...
T Consensus 149 ~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp-----dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~ 223 (369)
T PF02239_consen 149 TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP-----DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGAN 223 (369)
T ss_dssp TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T-----TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEE
T ss_pred CCeEEEEEeccccccceeeecccccccccccCc-----ccceeeecccccceeEEEeeccceEEEEeecccccccccccc
Confidence 488888888766543322333344567788888 88887665 456789999999988776552 23334433
Q ss_pred EEeCC---------CC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHH
Q 012799 246 VKWGG---------DG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK 315 (456)
Q Consensus 246 ~~~~~---------~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (456)
+-... .+ ..++.-....+.+||....+.++++...+.+ .-+..+|+
T Consensus 224 ~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~----------------------- 279 (369)
T PF02239_consen 224 FPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPD----------------------- 279 (369)
T ss_dssp EEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-----------------------
T ss_pred ccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCC-----------------------
Confidence 32111 11 2222223345667888999999999877776 77788887
Q ss_pred HHHhhhhhccCCCCCEEEEE----eCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECC--CcEEEEeC
Q 012799 316 AALERYNKIKGNAPERLVSG----SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD--KSIKLWNG 389 (456)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d--g~i~iwd~ 389 (456)
+.++++. ...+.|.++|..+.+.......+....+..+.|+++|+.+..+..+ |.|.+||.
T Consensus 280 -------------s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 280 -------------SRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp --------------SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred -------------CccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 4456666 4568999999766532222212222348899999999986655443 36999999
Q ss_pred CCCeEEEEEe
Q 012799 390 TTGKFVAVFR 399 (456)
Q Consensus 390 ~~~~~~~~~~ 399 (456)
.+.+.+..+.
T Consensus 347 ~Tl~~~~~i~ 356 (369)
T PF02239_consen 347 KTLKEKKRIP 356 (369)
T ss_dssp TTTEEEEEEE
T ss_pred CCcEEEEEEE
Confidence 9999998887
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.45 E-value=1.8e-11 Score=109.07 Aligned_cols=163 Identities=23% Similarity=0.334 Sum_probs=131.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEecCc---CccEEEEEe--------------------CCCC-eEEEEeCCCcEE
Q 012799 209 PCRRFVSASKDGDARIWDVSLRKCVICLSGH---TLAVTCVKW--------------------GGDG-VIYTGSQDCTIK 264 (456)
Q Consensus 209 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~--------------------~~~~-~l~~~~~dg~i~ 264 (456)
...++|....||.+++||...++....+... .+..++..| +.+. .++-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 5678999999999999999988876665321 233344444 1122 688899999999
Q ss_pred EEECCCCeEEEEee--cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEE
Q 012799 265 VWETTQGKLIRELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF 342 (456)
Q Consensus 265 iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 342 (456)
+|+...++.-..+. .|.+.|+++.++.+ -..|.+++.|+.+.
T Consensus 84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~------------------------------------~~ciyS~~ad~~v~ 127 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYGNVNEILDAQR------------------------------------LGCIYSVGADLKVV 127 (541)
T ss_pred EEEecCCeEEEEEecCCCCCcceeeecccc------------------------------------cCceEecCCceeEE
Confidence 99999999888775 47888999888776 34599999999999
Q ss_pred EEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799 343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410 (456)
Q Consensus 343 iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 410 (456)
.|+... .............+.+++.+|||..+++++ +.|++||+++++.+..|.+|.++|+++.|
T Consensus 128 ~~~~~~-~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f 192 (541)
T KOG4547|consen 128 YILEKE-KVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSF 192 (541)
T ss_pred EEeccc-ceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEE
Confidence 999544 445566677778899999999999999885 67999999999999999999999999944
No 252
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.45 E-value=3.9e-11 Score=112.11 Aligned_cols=184 Identities=23% Similarity=0.229 Sum_probs=125.3
Q ss_pred ccccccccCCcccEEEEEECCCCCeEEEEECC---CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEE-EeCCC-
Q 012799 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGD---TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVS-GSKAG- 172 (456)
Q Consensus 98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d---~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg- 172 (456)
+...+.+..+...+.+.+|+|||++||.++.+ ..|++||+.+++... +..+...+.+++|+|||+.|+. .+.++
T Consensus 179 g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~ 257 (417)
T TIGR02800 179 GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGN 257 (417)
T ss_pred CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCC
Confidence 34456677778889999999999999987644 479999998875433 3345666778999999997764 44444
Q ss_pred -eEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC-C--cEEEEECCCCeEEEEecCcCccEEEEEe
Q 012799 173 -ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-G--DARIWDVSLRKCVICLSGHTLAVTCVKW 248 (456)
Q Consensus 173 -~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 248 (456)
.|.+||+.++.... +..+........|+| +++.++..+.. + .|+++|+.+++.. .+..+........|
T Consensus 258 ~~i~~~d~~~~~~~~--l~~~~~~~~~~~~s~-----dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~ 329 (417)
T TIGR02800 258 PDIYVMDLDGKQLTR--LTNGPGIDTEPSWSP-----DGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSW 329 (417)
T ss_pred ccEEEEECCCCCEEE--CCCCCCCCCCEEECC-----CCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEE
Confidence 58888988775432 333444455678888 88888776543 3 5888888776543 33334556778899
Q ss_pred CCCC-eEEEEeCCC---cEEEEECCCCeEEEEeecCCcceEEEEecCc
Q 012799 249 GGDG-VIYTGSQDC---TIKVWETTQGKLIRELKGHGHWVNSLALSTE 292 (456)
Q Consensus 249 ~~~~-~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 292 (456)
+|++ .++.++.++ .|.+||+.++... .+... .......|+|+
T Consensus 330 spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spd 375 (417)
T TIGR02800 330 SPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPN 375 (417)
T ss_pred CCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCC
Confidence 9999 676666665 7899998875432 22221 12334456666
No 253
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.45 E-value=3.3e-11 Score=107.48 Aligned_cols=168 Identities=19% Similarity=0.222 Sum_probs=140.4
Q ss_pred CCCCeEEEEECCCcEEEEeCCCCcceeEEec---CCCCEEEEEEc--------------------CCCCEEEEEeCCCeE
Q 012799 118 PDGRQLASGSGDTTVRLWDLNTQTPMFKCTG---HKNWVLCIAWS--------------------ADGKHLVSGSKAGEL 174 (456)
Q Consensus 118 ~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~---~~~~v~~~~~~--------------------~~~~~l~s~~~dg~i 174 (456)
|-+.++|....||.+++|+..+++....+.. -.+..++..|. .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999998876665542 23344455542 234467788889999
Q ss_pred EEEeCCCCCCccccc-cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-
Q 012799 175 QCWDPQTGKPSGNPL-SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG- 252 (456)
Q Consensus 175 ~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~- 252 (456)
.+|+...|+...+.. ..|.+.|.++.+.. +-..|.+++.|+.+..|+....+.++..++.+..+.+++.+||+
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~-----~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQ-----RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeeccc-----ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence 999999998766544 67999999999887 67899999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCc
Q 012799 253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE 292 (456)
Q Consensus 253 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 292 (456)
.+++++ +.|++||+++++.+..|.+|.++|++++|...
T Consensus 158 ~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEe
Confidence 776665 47999999999999999999999999998765
No 254
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=6.9e-11 Score=110.09 Aligned_cols=221 Identities=20% Similarity=0.174 Sum_probs=136.0
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEECC-C--cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEE-EeCCCe--E
Q 012799 101 SATIAGHTEAVLSVAFSPDGRQLASGSGD-T--TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVS-GSKAGE--L 174 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d-~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg~--i 174 (456)
.+.+..+...+.+..|+|||+.|+..+.+ + .|++||+.+++... +....+.....+|+|||+.|+. .+.+|. |
T Consensus 210 ~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~I 288 (448)
T PRK04792 210 EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEI 288 (448)
T ss_pred ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEE
Confidence 44566677788999999999999876543 2 58889998776432 3323334457899999998875 455664 7
Q ss_pred EEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC-CC--cEEEEECCCCeEEEEecCcCccEEEEEeCCC
Q 012799 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DG--DARIWDVSLRKCVICLSGHTLAVTCVKWGGD 251 (456)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 251 (456)
.++|+.+++... +..+........|+| +++.++..+. ++ .|+++|+.+++..... .........+|+|+
T Consensus 289 y~~dl~tg~~~~--lt~~~~~~~~p~wSp-----DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpD 360 (448)
T PRK04792 289 YVVDIATKALTR--ITRHRAIDTEPSWHP-----DGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPD 360 (448)
T ss_pred EEEECCCCCeEE--CccCCCCccceEECC-----CCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCC
Confidence 778888776432 344445567788998 8888876654 33 5677787776643322 12222345689999
Q ss_pred C-eEEEEe-CCC--cEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCC
Q 012799 252 G-VIYTGS-QDC--TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327 (456)
Q Consensus 252 ~-~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (456)
| .++..+ .++ .|.++|+.+++... +... .......|+|+
T Consensus 361 G~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spd----------------------------------- 403 (448)
T PRK04792 361 GRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPN----------------------------------- 403 (448)
T ss_pred CCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCC-----------------------------------
Confidence 9 554443 344 45667887775432 2211 11223456666
Q ss_pred CCCEEEEEe-CCCc--EEEEecCCCCCCccccccccccEeEEEECC
Q 012799 328 APERLVSGS-DDFT--MFLWEPAVSKQPKTRMTGHQQLVNHVYFSP 370 (456)
Q Consensus 328 ~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp 370 (456)
+..++..+ .++. +++++.. + .....+..+.+.+...+|+|
T Consensus 404 -G~~I~~~~~~~g~~~l~~~~~~-G-~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 404 -GTMVIYSTTYQGKQVLAAVSID-G-RFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred -CCEEEEEEecCCceEEEEEECC-C-CceEECcCCCCCcCCCccCC
Confidence 44454443 3443 6666642 2 23333444555677778887
No 255
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.42 E-value=3.2e-09 Score=95.77 Aligned_cols=249 Identities=17% Similarity=0.223 Sum_probs=159.2
Q ss_pred ccEEEEEECCCCCeEEEEEC----CCcEEEEeCCCC--c--ceeEEecCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEeC
Q 012799 109 EAVLSVAFSPDGRQLASGSG----DTTVRLWDLNTQ--T--PMFKCTGHKNWVLCIAWSADGKHLVSGSK-AGELQCWDP 179 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~~----d~~v~vwd~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~ 179 (456)
.....++++|++++|.+... ++.|..|++... + .+............++++|++++|+++.. +|.|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 34456889999999998876 568999988764 2 22333334556678999999999998875 889999999
Q ss_pred CCCCCcccc---c----------cCcccceEEEEecccccCCCCCEEEEEeC-CCcEEEEECCCCe--EE--EEe-cCcC
Q 012799 180 QTGKPSGNP---L----------SGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRK--CV--ICL-SGHT 240 (456)
Q Consensus 180 ~~~~~~~~~---~----------~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~--~~--~~~-~~~~ 240 (456)
.....+... . ........++.++| +++++++... ...|.+|++.... .. ..+ ....
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-----dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G 191 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-----DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG 191 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-----TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECC-----CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC
Confidence 874222111 1 11234467888888 8888887654 3479999987654 21 222 2345
Q ss_pred ccEEEEEeCCCC-eE-EEEeCCCcEEEEECC--CCeE--EEEeecC------CcceEEEEecCcceeeeccccCCCCccC
Q 012799 241 LAVTCVKWGGDG-VI-YTGSQDCTIKVWETT--QGKL--IRELKGH------GHWVNSLALSTEYALRTGAFDHTGKQYS 308 (456)
Q Consensus 241 ~~v~~~~~~~~~-~l-~~~~~dg~i~iwd~~--~~~~--~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 308 (456)
...+.+.|+|++ ++ ++...++.|.++++. ++.. +..+... ......+.++|+
T Consensus 192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd---------------- 255 (345)
T PF10282_consen 192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD---------------- 255 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT----------------
T ss_pred CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC----------------
Confidence 667899999998 44 445567889999988 4432 2222211 124667888887
Q ss_pred ChHHHHHHHHhhhhhccCCCCCEEEE-EeCCCcEEEEecCCCCCCcc---ccccccccEeEEEECCCCCEEEEEE-CCCc
Q 012799 309 SPEEMKKAALERYNKIKGNAPERLVS-GSDDFTMFLWEPAVSKQPKT---RMTGHQQLVNHVYFSPDGQWVASAS-FDKS 383 (456)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~ 383 (456)
+++|++ ...++.|.+|++......+. .........+.++++|+|++|+++. .++.
T Consensus 256 --------------------g~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~ 315 (345)
T PF10282_consen 256 --------------------GRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT 315 (345)
T ss_dssp --------------------SSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred --------------------CCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe
Confidence 444554 44577899999843322221 2222234589999999999988876 5568
Q ss_pred EEEEeC--CCCeEEEEE
Q 012799 384 IKLWNG--TTGKFVAVF 398 (456)
Q Consensus 384 i~iwd~--~~~~~~~~~ 398 (456)
|.+|++ .+|.+...-
T Consensus 316 v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 316 VSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred EEEEEEeCCCCcEEEec
Confidence 999865 577765443
No 256
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.41 E-value=8.5e-12 Score=118.12 Aligned_cols=197 Identities=23% Similarity=0.339 Sum_probs=156.4
Q ss_pred CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCC----EEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 012799 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW----VLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (456)
Q Consensus 107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 182 (456)
-.+.|....+..+.+.++.++.++.+.+||...+.....+...... ..-+.++++.-++++|+--+.|.+|+....
T Consensus 86 ~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d 165 (967)
T KOG0974|consen 86 FSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED 165 (967)
T ss_pred ccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc
Confidence 4556666667777788999999999999999877666655533221 222345567779999999999999999843
Q ss_pred CCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEE-EecCcCccEEEEEeCCCCeEEEEeCCC
Q 012799 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI-CLSGHTLAVTCVKWGGDGVIYTGSQDC 261 (456)
Q Consensus 183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~l~~~~~dg 261 (456)
+... .+.+|.+.+..+.|+- +|.++++.+.|.++++|++++.+... ..-+|...+..+++.|+ .+++++.|.
T Consensus 166 n~p~-~l~GHeG~iF~i~~s~-----dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~gedc 238 (967)
T KOG0974|consen 166 NKPI-RLKGHEGSIFSIVTSL-----DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITVGEDC 238 (967)
T ss_pred CCcc-eecccCCceEEEEEcc-----CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEeccce
Confidence 3332 5899999999999988 99999999999999999999987766 66789999999999999 999999999
Q ss_pred cEEEEECCCCeEEEEeecCC-cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCc
Q 012799 262 TIKVWETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (456)
Q Consensus 262 ~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 340 (456)
+.++|+.. ++.+..+..|. ..+..++..+.. ..+++++.|+.
T Consensus 239 tcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~------------------------------------~~~vT~g~Ds~ 281 (967)
T KOG0974|consen 239 TCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGV------------------------------------IIKVTGGNDST 281 (967)
T ss_pred EEEEEecc-cceehhhhhhhhcceeEEEEcCCc------------------------------------eEEEeeccCcc
Confidence 99999754 45555666554 457788887763 34899999999
Q ss_pred EEEEecC
Q 012799 341 MFLWEPA 347 (456)
Q Consensus 341 i~iwd~~ 347 (456)
+++||+.
T Consensus 282 lk~~~l~ 288 (967)
T KOG0974|consen 282 LKLWDLN 288 (967)
T ss_pred hhhhhhh
Confidence 9999854
No 257
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=2e-12 Score=114.17 Aligned_cols=174 Identities=19% Similarity=0.306 Sum_probs=131.7
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC-------CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 012799 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL 174 (456)
Q Consensus 102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 174 (456)
..+.||...|..++--.+.+-+++++.|++|++|.++. ..+..+++.|..+|..+.|-.+-++++++ ||-|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence 56789999999999888888899999999999999864 23567788999999999999998888765 7899
Q ss_pred EEEeCCCCCCccccccC-cccceEEEEecccccCCCCCEEEEE-eCCCcEEEEECCCCeEEEEec-----CcCccEEEEE
Q 012799 175 QCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSA-SKDGDARIWDVSLRKCVICLS-----GHTLAVTCVK 247 (456)
Q Consensus 175 ~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~ 247 (456)
++||.--++.+...... ..+.+..+...+. -+...+++| +...+|+++|.+..+-...++ +....+.+++
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~n---v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN---VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEeccc---CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 99998877765533221 1222333333231 122334444 778999999999876555443 3456789999
Q ss_pred eCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecC
Q 012799 248 WGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGH 280 (456)
Q Consensus 248 ~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 280 (456)
+.+.| .++++-.+|.|.+.|.++|+.+...+..
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpm 917 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPM 917 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcc
Confidence 99988 9999999999999999999987766543
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=1.8e-10 Score=106.44 Aligned_cols=232 Identities=13% Similarity=0.040 Sum_probs=140.1
Q ss_pred CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEE---EEEeCCC--eEEEEeCCCCCCccccccCcccceEEEEeccc
Q 012799 130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL---VSGSKAG--ELQCWDPQTGKPSGNPLSGHKKWITGISWEPV 204 (456)
Q Consensus 130 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 204 (456)
..|.+.|.+.+.. ..+......+..-+|+|||+.+ ++...+| .|.+.++.+++... +....+......|+|
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--lt~~~g~~~~p~wSP- 240 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--ILALQGNQLMPTFSP- 240 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--eecCCCCccceEECC-
Confidence 3677778765543 3454456667888999999752 2444444 57778888776543 333445556788999
Q ss_pred ccCCCCCEEEEEeC-CC----cEEEEECCCC---eEEEEecCcCccEEEEEeCCCC-eEEEEe-CCCcEEEE--ECCC-C
Q 012799 205 HLNAPCRRFVSASK-DG----DARIWDVSLR---KCVICLSGHTLAVTCVKWGGDG-VIYTGS-QDCTIKVW--ETTQ-G 271 (456)
Q Consensus 205 ~~~~~~~~l~~~~~-dg----~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~dg~i~iw--d~~~-~ 271 (456)
||+.|+..+. +| .+..|++..+ +...............+|+|+| .|+..+ .+|...+| ++.. +
T Consensus 241 ----DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g 316 (428)
T PRK01029 241 ----RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG 316 (428)
T ss_pred ----CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence 9988887653 22 3444676542 3233332333344678999999 555444 46654454 4432 2
Q ss_pred eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC---CcEEEEecCC
Q 012799 272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD---FTMFLWEPAV 348 (456)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~ 348 (456)
.....+......+....|+|+ ++.|+..+.+ ..|.+||+..
T Consensus 317 ~~~~~lt~~~~~~~~p~wSPD------------------------------------G~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 317 QSPRLLTKKYRNSSCPAWSPD------------------------------------GKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred cceEEeccCCCCccceeECCC------------------------------------CCEEEEEEcCCCCcEEEEEECCC
Confidence 333444444455677888888 4446554432 4689999766
Q ss_pred CCCCccccccccccEeEEEECCCCCEEEEEEC---CCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASF---DKSIKLWNGTTGKFVAVFRGHVGPVYQI 408 (456)
Q Consensus 349 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~i 408 (456)
+... .+......+....|+|||++|+.... .+.|.++|+..++...... ..+.+...
T Consensus 361 g~~~--~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~~~~p 420 (428)
T PRK01029 361 GRDY--QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GSGEKRFP 420 (428)
T ss_pred CCeE--EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCcccCc
Confidence 5432 22222345677899999998775443 3568888988776544433 33344444
No 259
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.39 E-value=3.3e-12 Score=127.03 Aligned_cols=192 Identities=17% Similarity=0.290 Sum_probs=154.4
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (456)
Q Consensus 102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 180 (456)
..++.|-..|.++.=+|...+.+||+.||.|++|....++.+..+. .....|+.+.|+.+|+.+..+..||.+.+|...
T Consensus 2202 ~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2202 VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence 3455677889999999999999999999999999998888777664 233889999999999999999999999999987
Q ss_pred CCCCccccccCcccceEEEEecccccCCCCCEEEEEe---CCCcEEEEECCCC---eEEEEecCcCccEEEEEeCCCC-e
Q 012799 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS---KDGDARIWDVSLR---KCVICLSGHTLAVTCVKWGGDG-V 253 (456)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~-~ 253 (456)
. ........|.....+..|.. ..+++++ .++.+.+||.... .++. ..|.+.++++++-|.. .
T Consensus 2282 p--k~~~s~qchnk~~~Df~Fi~-------s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~ql 2350 (2439)
T KOG1064|consen 2282 P--KPYTSWQCHNKALSDFRFIG-------SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQL 2350 (2439)
T ss_pred C--cceeccccCCccccceeeee-------hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceE
Confidence 2 22235677888888888854 4566654 4788999997432 2333 7899999999999988 9
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEE
Q 012799 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333 (456)
Q Consensus 254 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 333 (456)
|++|+.+|.|++||++..+.++.++. +. ..++++
T Consensus 2351 lisggr~G~v~l~D~rqrql~h~~~~---------~~-------------------------------------~~~~f~ 2384 (2439)
T KOG1064|consen 2351 LISGGRKGEVCLFDIRQRQLRHTFQA---------LD-------------------------------------TREYFV 2384 (2439)
T ss_pred EEecCCcCcEEEeehHHHHHHHHhhh---------hh-------------------------------------hhheee
Confidence 99999999999999998887766653 11 145699
Q ss_pred EEeCCCcEEEEecCCCC
Q 012799 334 SGSDDFTMFLWEPAVSK 350 (456)
Q Consensus 334 ~~~~dg~i~iwd~~~~~ 350 (456)
+|+..|.++||++....
T Consensus 2385 ~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2385 TGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred ccCcccceEEEEccccc
Confidence 99999999999977654
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=5.9e-10 Score=103.05 Aligned_cols=231 Identities=17% Similarity=0.133 Sum_probs=139.8
Q ss_pred cccccccccCCcccEEEEEECCCCCeEE---EEECCC--cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeC-
Q 012799 97 VNRCSATIAGHTEAVLSVAFSPDGRQLA---SGSGDT--TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK- 170 (456)
Q Consensus 97 ~~~~~~~l~~h~~~V~~~~~s~~~~~l~---~~~~d~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~- 170 (456)
.+...+.|..+...+.+-+|+|||+.++ +...+| .|.+.++.+++.. .+....+.....+|+|||+.|+..+.
T Consensus 173 dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~ 251 (428)
T PRK01029 173 DGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDR 251 (428)
T ss_pred CCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECC
Confidence 3444556666677788899999997532 333333 5778888876543 33334555667899999998887653
Q ss_pred CC----eEEEEeCCCCC--CccccccCcccceEEEEecccccCCCCCEEEEEe-CCCcEEEE--ECCC-CeEEEEecCcC
Q 012799 171 AG----ELQCWDPQTGK--PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIW--DVSL-RKCVICLSGHT 240 (456)
Q Consensus 171 dg----~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~-~dg~i~iw--d~~~-~~~~~~~~~~~ 240 (456)
+| .+..|++..+. ................+|+| +|+.|+..+ .+|...+| ++.. +.....+..+.
T Consensus 252 ~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-----DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~ 326 (428)
T PRK01029 252 YGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-----DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY 326 (428)
T ss_pred CCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-----CCCEEEEEECCCCCceEEEEECcccccceEEeccCC
Confidence 23 34557776532 11212222223446778998 999888765 45654555 4432 23344444445
Q ss_pred ccEEEEEeCCCC-eEEEEeCC---CcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHH
Q 012799 241 LAVTCVKWGGDG-VIYTGSQD---CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316 (456)
Q Consensus 241 ~~v~~~~~~~~~-~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (456)
..+....|+|+| .|+..+.+ ..|.+||+.+++..... .....+....|+|+
T Consensus 327 ~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpD------------------------ 381 (428)
T PRK01029 327 RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAID------------------------ 381 (428)
T ss_pred CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCC------------------------
Confidence 567788999999 55554432 36999999888764333 23345667888887
Q ss_pred HHhhhhhccCCCCCEEEEE-eC--CCcEEEEecCCCCCCccccccccccEeEEEECCCC
Q 012799 317 ALERYNKIKGNAPERLVSG-SD--DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG 372 (456)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~-~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~ 372 (456)
++.|+.. .. ...|+++|+..+.. ..+....+.+...+|+|-.
T Consensus 382 ------------G~~L~f~~~~~g~~~L~~vdl~~g~~--~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 382 ------------SLHLVYSAGNSNESELYLISLITKKT--RKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred ------------CCEEEEEECCCCCceEEEEECCCCCE--EEeecCCCcccCceecCCC
Confidence 3445433 22 35688888765432 2232334456677888743
No 261
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.39 E-value=3e-11 Score=100.55 Aligned_cols=244 Identities=15% Similarity=0.178 Sum_probs=176.5
Q ss_pred ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC
Q 012799 142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ-TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG 220 (456)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg 220 (456)
.+..+.||.+.++....-|...-+++.+.|.+++||--+ .++.-..+......++.++.+.+ ....|++|-..|
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~-----e~~~L~vg~~ng 90 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS-----ESRRLYVGQDNG 90 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec-----cceEEEEEEecc
Confidence 345677899999998888888889999999999999543 44444334444567788898888 778999999999
Q ss_pred cEEEEEC----CCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCccee
Q 012799 221 DARIWDV----SLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL 295 (456)
Q Consensus 221 ~i~iwd~----~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 295 (456)
++.-+.+ +.....+....|...+..+.|+-.. .+++.+.|..+.---.+.+..+.... ..+.+..++..+
T Consensus 91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-----~~~~~t~~~~d~ 165 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-----FETPASALQFDA 165 (404)
T ss_pred eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-----eeccCCCCceee
Confidence 9988865 4455566677899999999998766 88888888776544344443322111 011111111110
Q ss_pred eeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCC-CCCCccccccccccEeEEEECCCCCE
Q 012799 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV-SKQPKTRMTGHQQLVNHVYFSPDGQW 374 (456)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~ 374 (456)
.+...|...|.+..-.+.. .-.++..+.+|.+.+.+++|.|..+.
T Consensus 166 ----------------------------------~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~ 211 (404)
T KOG1409|consen 166 ----------------------------------LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRL 211 (404)
T ss_pred ----------------------------------EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcE
Confidence 1245566666666555433 33466778899999999999999999
Q ss_pred EEEEECCCcEEEEeCCCCeE-EEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCce
Q 012799 375 VASASFDKSIKLWNGTTGKF-VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL 453 (456)
Q Consensus 375 l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v 453 (456)
|.+|..|..+.+||+.-.+- ...+.+|...|..+ ..-+--+.|++++.||.|
T Consensus 212 LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l---------------------------~~~~~t~~l~S~~edg~i 264 (404)
T KOG1409|consen 212 LFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL---------------------------SYAQHTRQLISCGEDGGI 264 (404)
T ss_pred EEeccccCceEEEeccCCcceeeeeccchhhhhhh---------------------------hhhhhheeeeeccCCCeE
Confidence 99999999999999876543 45677899988888 445666899999999999
Q ss_pred EEC
Q 012799 454 KVT 456 (456)
Q Consensus 454 ~iW 456 (456)
-+|
T Consensus 265 ~~w 267 (404)
T KOG1409|consen 265 VVW 267 (404)
T ss_pred EEE
Confidence 988
No 262
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.38 E-value=4e-09 Score=95.18 Aligned_cols=266 Identities=17% Similarity=0.183 Sum_probs=160.6
Q ss_pred EEEEECC----CcEEEEeC--CCCcceeEE-ecCCCCEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCC--CCccc-c
Q 012799 123 LASGSGD----TTVRLWDL--NTQTPMFKC-TGHKNWVLCIAWSADGKHLVSGSK----AGELQCWDPQTG--KPSGN-P 188 (456)
Q Consensus 123 l~~~~~d----~~v~vwd~--~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~----dg~i~vwd~~~~--~~~~~-~ 188 (456)
++.|+.. +.|.+|++ ++++....- .........++++|++++|.+... ++.|..|++... +.... .
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4556655 68999888 333322111 124455677999999999999877 468999988764 22110 1
Q ss_pred ccCcccceEEEEecccccCCCCCEEEEEeC-CCcEEEEECCC-CeEEEE---ec----------CcCccEEEEEeCCCC-
Q 012799 189 LSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSL-RKCVIC---LS----------GHTLAVTCVKWGGDG- 252 (456)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~- 252 (456)
..........++++| ++++++++.. +|.|.++++.. +..... +. .......++.++|++
T Consensus 82 ~~~~g~~p~~i~~~~-----~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~ 156 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDP-----DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR 156 (345)
T ss_dssp EEESSSCEEEEEECT-----TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS
T ss_pred eccCCCCcEEEEEec-----CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC
Confidence 111233456677777 8888888864 89999999976 333222 11 123457889999998
Q ss_pred eEEEEe-CCCcEEEEECCCCe--EE--EEee-cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccC
Q 012799 253 VIYTGS-QDCTIKVWETTQGK--LI--RELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326 (456)
Q Consensus 253 ~l~~~~-~dg~i~iwd~~~~~--~~--~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (456)
.+++.. ....|.+|++.... .. ..+. .....-+.+.|+|++.+
T Consensus 157 ~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~------------------------------- 205 (345)
T PF10282_consen 157 FVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKY------------------------------- 205 (345)
T ss_dssp EEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSE-------------------------------
T ss_pred EEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCE-------------------------------
Confidence 555543 34579999987654 32 2222 34456778899988432
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCCcc------cc---ccccccEeEEEECCCCCEEEEEE-CCCcEEEEeCC--CCeE
Q 012799 327 NAPERLVSGSDDFTMFLWEPAVSKQPKT------RM---TGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGT--TGKF 394 (456)
Q Consensus 327 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~------~~---~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~--~~~~ 394 (456)
.+++.-.++.|.++++........ .+ .........++++|||++|+++. ..+.|.+|++. +|++
T Consensus 206 ----~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l 281 (345)
T PF10282_consen 206 ----AYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL 281 (345)
T ss_dssp ----EEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE
T ss_pred ----EEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCce
Confidence 244555677888888762221111 11 01122578899999999977765 56789999983 3433
Q ss_pred --EEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC-CCceEE
Q 012799 395 --VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DSTLKV 455 (456)
Q Consensus 395 --~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~-Dg~v~i 455 (456)
+..+......-..+ +++|+|++|+++.. ++.|.+
T Consensus 282 ~~~~~~~~~G~~Pr~~---------------------------~~s~~g~~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 282 TLVQTVPTGGKFPRHF---------------------------AFSPDGRYLYVANQDSNTVSV 318 (345)
T ss_dssp EEEEEEEESSSSEEEE---------------------------EE-TTSSEEEEEETTTTEEEE
T ss_pred EEEEEEeCCCCCccEE---------------------------EEeCCCCEEEEEecCCCeEEE
Confidence 33333222334555 88999999998874 556654
No 263
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.38 E-value=3.7e-10 Score=99.02 Aligned_cols=249 Identities=12% Similarity=0.084 Sum_probs=157.4
Q ss_pred CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCC--------------
Q 012799 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG-------------- 172 (456)
Q Consensus 107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-------------- 172 (456)
-.-++..++|||.|.+|++....| |.+|.......+..+. | ..|..+.|+|.+++|.+=+..+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 567899999999999999987664 9999988777665554 3 4589999999999999865433
Q ss_pred -eEEEEeCCCCCCccccccCcccc--eE-EEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC-cCccEEEEE
Q 012799 173 -ELQCWDPQTGKPSGNPLSGHKKW--IT-GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG-HTLAVTCVK 247 (456)
Q Consensus 173 -~i~vwd~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~ 247 (456)
.+.+||+.+|..+.. +.....+ .+ -+.|+- +..+.+-. ....++++++...-...-+.. ....|....
T Consensus 108 n~~~vwd~~sg~iv~s-f~~~~q~~~~Wp~~k~s~-----~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFs 180 (561)
T COG5354 108 NNVFVWDIASGMIVFS-FNGISQPYLGWPVLKFSI-----DDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFS 180 (561)
T ss_pred CceeEEeccCceeEee-ccccCCcccccceeeeee-----cchhhhhh-ccCeEEEEecCCccccCchhhccccceeeEE
Confidence 499999999987652 2222222 22 345554 55555544 345689999722111111111 135688888
Q ss_pred eCCCC---eEEE-----EeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHh
Q 012799 248 WGGDG---VIYT-----GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319 (456)
Q Consensus 248 ~~~~~---~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (456)
|+|.+ .|+. ....+++++|.+..+..+.+-.-....-..+.|.+.+.+...-.....+
T Consensus 181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~k-------------- 246 (561)
T COG5354 181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTK-------------- 246 (561)
T ss_pred ecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeee--------------
Confidence 98864 4332 5567889999998777665544333334556666654332211100000
Q ss_pred hhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEE--EECCCcEEEEeCCCC
Q 012799 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS--ASFDKSIKLWNGTTG 392 (456)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s--~~~dg~i~iwd~~~~ 392 (456)
....+ -....++++++.....++.. ...++|...+|.|.++.+++ |-.+-.+.++|++..
T Consensus 247 -------snKsy----fgesnLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 247 -------SNKSY----FGESNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred -------cccce----eccceEEEEeecccccceec--cccccceeeeecccCCceeEEecccccceeecccccc
Confidence 00000 12346888887644433332 55789999999998877555 457788999998754
No 264
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=2.6e-11 Score=107.58 Aligned_cols=174 Identities=14% Similarity=0.269 Sum_probs=134.4
Q ss_pred EEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc----
Q 012799 113 SVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP---- 188 (456)
Q Consensus 113 ~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---- 188 (456)
.++++.-..-|..++....|+-++++.|..+..+....+.++++..++-..+|++|+.+|.|..||.+....+...
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~ 217 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS 217 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccc
Confidence 3445433333444445557999999999999888888899999999999999999999999999999876644321
Q ss_pred -ccCccc-----ceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CcCccEEEEEeCCCC--eEEEEeC
Q 012799 189 -LSGHKK-----WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGGDG--VIYTGSQ 259 (456)
Q Consensus 189 -~~~~~~-----~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~--~l~~~~~ 259 (456)
...|.+ .|+++.|.. +|-.+++|+.+|.+.|||+++.+++..-. +...+|..+.|.+.+ .-++...
T Consensus 218 ~v~s~pg~~~~~svTal~F~d-----~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D 292 (703)
T KOG2321|consen 218 SVNSHPGGDAAPSVTALKFRD-----DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD 292 (703)
T ss_pred ccCCCccccccCcceEEEecC-----CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecc
Confidence 222333 489999987 78899999999999999999998876542 345689999997753 4444555
Q ss_pred CCcEEEEECCCCeEEEEeecCCcceEEEEecCc
Q 012799 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTE 292 (456)
Q Consensus 260 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 292 (456)
...++|||-.+|+....+.. ...++.+++-|+
T Consensus 293 k~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~ 324 (703)
T KOG2321|consen 293 KRILKIWDECTGKPMASIEP-TSDLNDFCFVPG 324 (703)
T ss_pred hHHhhhcccccCCceeeccc-cCCcCceeeecC
Confidence 67899999999999888874 444888888887
No 265
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.37 E-value=9e-10 Score=101.26 Aligned_cols=229 Identities=14% Similarity=0.081 Sum_probs=146.8
Q ss_pred CCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEE
Q 012799 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI 199 (456)
Q Consensus 120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 199 (456)
+..+++++.+|.|..+|..+++.+............... ++..++.++.+|.+..+|.++|+....... ...+.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~--~~~~~-- 138 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKL--SSEVL-- 138 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeecc--Cceee--
Confidence 567888888999999999999988776543322222222 567888889999999999999987653221 12221
Q ss_pred EecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEE-----EEEeCCCCeEEEEeCCCcEEEEECCCCeEE
Q 012799 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT-----CVKWGGDGVIYTGSQDCTIKVWETTQGKLI 274 (456)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-----~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 274 (456)
-.|.. .+..++.++.+|.++.||.++++.+........... ..... ++.++.+..+|.+..+|.++|+.+
T Consensus 139 -~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 139 -SPPLV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred -cCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CCEEEEECCCCEEEEEEccCCCEe
Confidence 11211 345777888899999999999998877654322111 11111 357788888999999999999876
Q ss_pred EEeecCCc----ceE---EEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecC
Q 012799 275 RELKGHGH----WVN---SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA 347 (456)
Q Consensus 275 ~~~~~~~~----~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 347 (456)
........ .+. .+.-+| ...+..++.++.+|.++.||..
T Consensus 214 W~~~~~~~~g~~~~~~~~~~~~~p----------------------------------~~~~~~vy~~~~~g~l~a~d~~ 259 (377)
T TIGR03300 214 WEQRVALPKGRTELERLVDVDGDP----------------------------------VVDGGQVYAVSYQGRVAALDLR 259 (377)
T ss_pred eeeccccCCCCCchhhhhccCCcc----------------------------------EEECCEEEEEEcCCEEEEEECC
Confidence 54321100 000 000000 0014568888899999999987
Q ss_pred CCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEE
Q 012799 348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF 398 (456)
Q Consensus 348 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 398 (456)
+++....... . ....... ++..++.++.||.+..+|..+|+.+...
T Consensus 260 tG~~~W~~~~--~-~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 260 SGRVLWKRDA--S-SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred CCcEEEeecc--C-CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence 6653322211 1 1112222 4667888889999999999999887655
No 266
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.36 E-value=6.6e-09 Score=91.38 Aligned_cols=258 Identities=13% Similarity=0.051 Sum_probs=155.7
Q ss_pred CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeC----------CCeEEEEeCCCCCCccccccCcc------
Q 012799 130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK----------AGELQCWDPQTGKPSGNPLSGHK------ 193 (456)
Q Consensus 130 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~------ 193 (456)
++|.+.|..+++.+.++..-..+- .+ ++||++.|+++.. +..|.+||..+.+....+..+.+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 789999999999888887444333 34 9999998887765 67899999999987754433211
Q ss_pred cceEEEEecccccCCCCCEEEEEe-C-CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCC
Q 012799 194 KWITGISWEPVHLNAPCRRFVSAS-K-DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQG 271 (456)
Q Consensus 194 ~~v~~~~~~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 271 (456)
.....++++| +|+++++.. . +..|.+.|+.+++.+..+.-.. ...-...+++ .+.+-+.||......+...
T Consensus 105 ~~~~~~~ls~-----dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~-~~~~~~~Dg~~~~v~~d~~ 177 (352)
T TIGR02658 105 TYPWMTSLTP-----DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAND-TFFMHCRDGSLAKVGYGTK 177 (352)
T ss_pred CccceEEECC-----CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCC-ccEEEeecCceEEEEecCC
Confidence 1233667777 999888776 3 6899999999999888775421 1111222222 2223345555444333321
Q ss_pred eEEEEeecCCcceEEEE-ecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC
Q 012799 272 KLIRELKGHGHWVNSLA-LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK 350 (456)
Q Consensus 272 ~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 350 (456)
.... ..... |..+... .+ ........++.+++.... |.|.+.|+....
T Consensus 178 g~~~--------~~~~~vf~~~~~~----------v~------------~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~ 226 (352)
T TIGR02658 178 GNPK--------IKPTEVFHPEDEY----------LI------------NHPAYSNKSGRLVWPTYT-GKIFQIDLSSGD 226 (352)
T ss_pred CceE--------EeeeeeecCCccc----------cc------------cCCceEcCCCcEEEEecC-CeEEEEecCCCc
Confidence 1111 00100 1110000 00 000001113555666555 999999964432
Q ss_pred C----Cccccc-------cccccEeEEEECCCCCEEEEEEC----------CCcEEEEeCCCCeEEEEEecccccEEEEE
Q 012799 351 Q----PKTRMT-------GHQQLVNHVYFSPDGQWVASASF----------DKSIKLWNGTTGKFVAVFRGHVGPVYQIR 409 (456)
Q Consensus 351 ~----~~~~~~-------~~~~~v~~~~~sp~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 409 (456)
. ....+. -..+.+.-++++|+++.++.... .+.|.++|..+++.+..+.. ...+..+
T Consensus 227 ~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~i- 304 (352)
T TIGR02658 227 AKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSI- 304 (352)
T ss_pred ceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeE-
Confidence 1 111111 12233445999999998887431 24799999999999998874 3467788
Q ss_pred eeeeeeecCCCCceeeecccccccceeEecCCC-eEEEee-CCCceEE
Q 012799 410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGS-KDSTLKV 455 (456)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~s~s-~Dg~v~i 455 (456)
+++|||+ +|++.. .++.|.|
T Consensus 305 --------------------------avS~Dgkp~lyvtn~~s~~VsV 326 (352)
T TIGR02658 305 --------------------------NVSQDAKPLLYALSTGDKTLYI 326 (352)
T ss_pred --------------------------EECCCCCeEEEEeCCCCCcEEE
Confidence 8899999 777665 4666654
No 267
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.36 E-value=1.6e-10 Score=94.25 Aligned_cols=244 Identities=18% Similarity=0.192 Sum_probs=160.4
Q ss_pred cccEEEEEECC---CCC-eEEEEECCCcEEEEeCCCCcceeEEecCC------CCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 012799 108 TEAVLSVAFSP---DGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHK------NWVLCIAWSADGKHLVSGSKAGELQCW 177 (456)
Q Consensus 108 ~~~V~~~~~s~---~~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~s~~~dg~i~vw 177 (456)
+..+..+.|.. +|. .++-+..+|.|.++..........+.+-. ....++.|++.+..++++-.+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 34456666653 344 56667788899999876544443333221 135678899999999999999998855
Q ss_pred eCCCCCC-ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC-CCeEEEE-ecCcCccEEEEEeCCCC--
Q 012799 178 DPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-LRKCVIC-LSGHTLAVTCVKWGGDG-- 252 (456)
Q Consensus 178 d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~-~~~~~~~v~~~~~~~~~-- 252 (456)
+...... .....+.|.-+.+...|+... .+.+.+|+.|+.+..||++ .++.+.. .+.|...|.++.-+|..
T Consensus 149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~----pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~ 224 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEFEAWTAKFSDKE----PNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPT 224 (339)
T ss_pred ecceeeeeecccccccceeeeeeecccCC----CceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCc
Confidence 5443322 123578899999999988743 3689999999999999999 4444444 56788999999998754
Q ss_pred eEEEEeCCCcEEEEECCC-CeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCE
Q 012799 253 VIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331 (456)
Q Consensus 253 ~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (456)
.+++|+.|-.|++||.|+ ++++..-. -.+.|..+..+|... ..
T Consensus 225 ~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~-----------------------------------~~ 268 (339)
T KOG0280|consen 225 YIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIF-----------------------------------HR 268 (339)
T ss_pred eEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhh-----------------------------------hH
Confidence 999999999999999994 56655544 346788888888621 11
Q ss_pred EEEEeCCCcEEEEecCCCCC----CccccccccccEeEEEECCCCCEEEEEE-CCCcEE-EEeCCC
Q 012799 332 LVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIK-LWNGTT 391 (456)
Q Consensus 332 l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~-iwd~~~ 391 (456)
++.++.-.-.++-+...... .......|.+-+..-.|.....+|||++ .|+.++ +|-.-+
T Consensus 269 lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 269 LLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred HHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 23333333344444332221 2233456666666666644445688865 455544 664433
No 268
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.32 E-value=9.8e-09 Score=102.75 Aligned_cols=301 Identities=17% Similarity=0.194 Sum_probs=191.5
Q ss_pred CCcccEEEEEECCCCCeEEEEECCCcEEEE----eCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC-
Q 012799 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLW----DLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ- 180 (456)
Q Consensus 106 ~h~~~V~~~~~s~~~~~l~~~~~d~~v~vw----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~- 180 (456)
...+.|.++.|-++...++.+..+|.|.+. +..+.. +.....-...|.+++||||+..|+..+.++++.+..-.
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 356789999999999999999999999999 444332 22223457789999999999999999999988776421
Q ss_pred ------------CC----------CCcc---------------c---------cccCcccceEEEEecccccCCCCCEEE
Q 012799 181 ------------TG----------KPSG---------------N---------PLSGHKKWITGISWEPVHLNAPCRRFV 214 (456)
Q Consensus 181 ------------~~----------~~~~---------------~---------~~~~~~~~v~~~~~~~~~~~~~~~~l~ 214 (456)
-| +... . .+. ....-..++|.. ||.+||
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRG-----DG~yFA 225 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRG-----DGEYFA 225 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECC-----CCcEEE
Confidence 00 0000 0 001 233445677877 999999
Q ss_pred EEeC---C---CcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCC----CcEEEEECCCCeEEEEee----cC
Q 012799 215 SASK---D---GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQD----CTIKVWETTQGKLIRELK----GH 280 (456)
Q Consensus 215 ~~~~---d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~----~~ 280 (456)
+.+. . ..++||+-+ |....+-..-.+--.+++|.|.|.++++... ..|.+|. ++|-.-..|. ..
T Consensus 226 Vss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~ 303 (928)
T PF04762_consen 226 VSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPE 303 (928)
T ss_pred EEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCC
Confidence 8775 2 478999855 6554444444444567899999954444432 4577776 3444333332 34
Q ss_pred CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC-Cccccc-c
Q 012799 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-PKTRMT-G 358 (456)
Q Consensus 281 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~-~ 358 (456)
...+..+.|+++ ++.|+....|. |.+|-..+-.- .++.+. .
T Consensus 304 ~~~v~~l~Wn~d------------------------------------s~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~ 346 (928)
T PF04762_consen 304 EEKVIELAWNSD------------------------------------SEILAVWLEDR-VQLWTRSNYHWYLKQEIRFS 346 (928)
T ss_pred CceeeEEEECCC------------------------------------CCEEEEEecCC-ceEEEeeCCEEEEEEEEEcc
Confidence 567899999998 44477666554 99998544321 111111 2
Q ss_pred ccccEeEEEECCCC-CEEEEEECCCcEEEEeCC----CC--------eEEEEEecccccEEEEEeeeeeeecCCCCceee
Q 012799 359 HQQLVNHVYFSPDG-QWVASASFDKSIKLWNGT----TG--------KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCV 425 (456)
Q Consensus 359 ~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~----~~--------~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~ 425 (456)
....+..+.|+|.. ..|...+.+|.+..++.. .+ ..+.++.|..-.++.++. ..--|....+.
T Consensus 347 ~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~----a~VPPPMs~~~ 422 (928)
T PF04762_consen 347 SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRR----AVVPPPMSSYE 422 (928)
T ss_pred CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccc----cCCCchHhceE
Confidence 23335559999954 447777777777666532 11 123444443333333311 11123445555
Q ss_pred ecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 426 VDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 426 ~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
...+..+..++|++++..+++-..||.|.+|
T Consensus 423 l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~ 453 (928)
T PF04762_consen 423 LELPSPVNDVAFSPSNSRFAVLTSDGSLSIY 453 (928)
T ss_pred EcCCCCcEEEEEeCCCCeEEEEECCCCEEEE
Confidence 6667788888999999889999999998875
No 269
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.32 E-value=1.6e-08 Score=88.38 Aligned_cols=122 Identities=17% Similarity=0.287 Sum_probs=91.8
Q ss_pred cCccEEEEEeCCCC-eEEEEeCCC-cEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHH
Q 012799 239 HTLAVTCVKWGGDG-VIYTGSQDC-TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316 (456)
Q Consensus 239 ~~~~v~~~~~~~~~-~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (456)
+...|.-..+..++ .++.|..|| .+-+||.++++. +.+...-+.|.++..+++
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~d------------------------ 412 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPD------------------------ 412 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCC------------------------
Confidence 33445444444444 677888888 899999987764 445556778999999988
Q ss_pred HHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCC----cEEEEeCCCC
Q 012799 317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK----SIKLWNGTTG 392 (456)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg----~i~iwd~~~~ 392 (456)
+.+++.+.....+.+.|+.++.... .-+...+-|+..+|+|+++++|-+--+| .|+++|+..+
T Consensus 413 ------------GK~~vvaNdr~el~vididngnv~~-idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 413 ------------GKKVVVANDRFELWVIDIDNGNVRL-IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred ------------CcEEEEEcCceEEEEEEecCCCeeE-ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 6668999999999999988765433 2345567899999999999999887665 6999999888
Q ss_pred eEEEEE
Q 012799 393 KFVAVF 398 (456)
Q Consensus 393 ~~~~~~ 398 (456)
+....-
T Consensus 480 Kiy~vT 485 (668)
T COG4946 480 KIYDVT 485 (668)
T ss_pred eEEEec
Confidence 765443
No 270
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.30 E-value=8e-12 Score=124.35 Aligned_cols=210 Identities=14% Similarity=0.244 Sum_probs=155.8
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CcCc
Q 012799 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTL 241 (456)
Q Consensus 163 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~ 241 (456)
+.+.....++...-|..+.+.. ....+-..|.++.-+| ...+.++|+.||.+++|.-..++.+..+. ....
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~~---~~k~~v~~v~r~~sHp-----~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s 2252 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASV---MIKHPVENVRRMTSHP-----SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNS 2252 (2439)
T ss_pred ccCCcccCCccccceeccccee---EeecccCceeeecCCC-----CCceEEecCCCceEEEEeccCCCeEEEeeccCcc
Confidence 3444444455555554443322 2334445677777777 55689999999999999998888877663 2348
Q ss_pred cEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhh
Q 012799 242 AVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320 (456)
Q Consensus 242 ~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (456)
.|+.+.|+.+| .+..+..||.+.+|... .++....+.|......+.|-..
T Consensus 2253 ~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~s---------------------------- 2303 (2439)
T KOG1064|consen 2253 RVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIGS---------------------------- 2303 (2439)
T ss_pred hhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeeeh----------------------------
Confidence 89999999998 89999999999999987 5566666667666665555432
Q ss_pred hhhccCCCCCEEEEE---eCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEE
Q 012799 321 YNKIKGNAPERLVSG---SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV 397 (456)
Q Consensus 321 ~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~ 397 (456)
.++++ +.++.+.+||.............|.+.++++++-|..++|++||.+|.|++||++..+++..
T Consensus 2304 ----------~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~ 2373 (2439)
T KOG1064|consen 2304 ----------LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHT 2373 (2439)
T ss_pred ----------hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHH
Confidence 13333 45788999996555444444488999999999999999999999999999999998887766
Q ss_pred EecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 398 FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 398 ~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
++ ++. ...++++|+..|.++||
T Consensus 2374 ~~------------------------------------~~~-~~~~f~~~ss~g~ikIw 2395 (2439)
T KOG1064|consen 2374 FQ------------------------------------ALD-TREYFVTGSSEGNIKIW 2395 (2439)
T ss_pred hh------------------------------------hhh-hhheeeccCcccceEEE
Confidence 65 234 45789999999999998
No 271
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=1.8e-09 Score=95.96 Aligned_cols=146 Identities=16% Similarity=0.243 Sum_probs=100.1
Q ss_pred CcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-e--EEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceee
Q 012799 220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-V--IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR 296 (456)
Q Consensus 220 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~--l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 296 (456)
.+++++++....+...+. ..++|.++.|++++ . ++.|-.-..+.+||++ +.++..+ ..++=+++-|+|.
T Consensus 251 q~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~---- 322 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPH---- 322 (566)
T ss_pred ceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCC----
Confidence 368888887555554443 47899999999999 3 4446667889999987 4555555 3456678888887
Q ss_pred eccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC---CCcEEEEecCCCCCCccccccccccEeEEEECCCCC
Q 012799 297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD---DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ 373 (456)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 373 (456)
+++++.++- .|.+-+||..+ .+.+..+... .-+-+.|+|||+
T Consensus 323 --------------------------------g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~--~tt~~eW~PdGe 367 (566)
T KOG2315|consen 323 --------------------------------GNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAA--NTTVFEWSPDGE 367 (566)
T ss_pred --------------------------------CCEEEEeecCCCCCceEEEeccc-hhhccccccC--CceEEEEcCCCc
Confidence 444555443 58899999776 4444444432 345679999999
Q ss_pred EEEEEEC------CCcEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799 374 WVASASF------DKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410 (456)
Q Consensus 374 ~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 410 (456)
+++|++. |+.++||+. +|.++....-.. ..+.+.|
T Consensus 368 ~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~s-EL~qv~W 408 (566)
T KOG2315|consen 368 YFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKS-ELLQVEW 408 (566)
T ss_pred EEEEEeccccEEecCCeEEEEe-cCceeehhhhhH-hHhheee
Confidence 9998864 678999996 577665433221 4555544
No 272
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.28 E-value=1.4e-08 Score=89.45 Aligned_cols=236 Identities=14% Similarity=0.126 Sum_probs=140.9
Q ss_pred ECCCCCeEEEEEC----------CCcEEEEeCCCCcceeEEecCC-------CCEEEEEEcCCCCEEEEEeC--CCeEEE
Q 012799 116 FSPDGRQLASGSG----------DTTVRLWDLNTQTPMFKCTGHK-------NWVLCIAWSADGKHLVSGSK--AGELQC 176 (456)
Q Consensus 116 ~s~~~~~l~~~~~----------d~~v~vwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~s~~~--dg~i~v 176 (456)
++|||+.|+.+.. +..|.+||..+.+.+..+.--. .....++++|||++|++... +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998877655 6799999999999988876322 23347899999999998763 688999
Q ss_pred EeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC-CeE-EEE---ecCcCccEEE-EEeCC
Q 012799 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKC-VIC---LSGHTLAVTC-VKWGG 250 (456)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~-~~~---~~~~~~~v~~-~~~~~ 250 (456)
.|+.+++.+.....+-...+ ....+ ..+.+-+.||......+.. ++. ... +.....++.. -.+.+
T Consensus 133 vD~~~~kvv~ei~vp~~~~v--y~t~e-------~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~ 203 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHI--FPTAN-------DTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSN 203 (352)
T ss_pred EECCCCcEEEEEeCCCCcEE--EEecC-------CccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEc
Confidence 99999987653332111111 11111 1122223344443333221 111 111 1110000000 02344
Q ss_pred -CC-eEEEEeCCCcEEEEECCCCe-----EEEEeec-------CCcceEEEEecCcceeeeccccCCCCccCChHHHHHH
Q 012799 251 -DG-VIYTGSQDCTIKVWETTQGK-----LIRELKG-------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316 (456)
Q Consensus 251 -~~-~l~~~~~dg~i~iwd~~~~~-----~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (456)
+| .+++... |+|.+.|+.... ....+.. ......-++++++
T Consensus 204 ~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d------------------------ 258 (352)
T TIGR02658 204 KSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRA------------------------ 258 (352)
T ss_pred CCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCC------------------------
Confidence 66 5555544 999999965432 2222211 1122334666666
Q ss_pred HHhhhhhccCCCCCEEEEEe----------CCCcEEEEecCCCCCCccccccccccEeEEEECCCCC-EEEEEE-CCCcE
Q 012799 317 ALERYNKIKGNAPERLVSGS----------DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASAS-FDKSI 384 (456)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~-~dg~i 384 (456)
+++++... ..+.|.++|..+.+.......+ ..+..++++||++ +|++.. .++.|
T Consensus 259 ------------g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~V 324 (352)
T TIGR02658 259 ------------RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTL 324 (352)
T ss_pred ------------CCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcE
Confidence 34455422 2247999997666544443444 3689999999999 777655 67889
Q ss_pred EEEeCCCCeEEEEEe
Q 012799 385 KLWNGTTGKFVAVFR 399 (456)
Q Consensus 385 ~iwd~~~~~~~~~~~ 399 (456)
.++|..+++.+..+.
T Consensus 325 sViD~~t~k~i~~i~ 339 (352)
T TIGR02658 325 YIFDAETGKELSSVN 339 (352)
T ss_pred EEEECcCCeEEeeec
Confidence 999999999998873
No 273
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.27 E-value=7.1e-09 Score=95.70 Aligned_cols=261 Identities=11% Similarity=0.066 Sum_probs=158.5
Q ss_pred CCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEE
Q 012799 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI 199 (456)
Q Consensus 120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 199 (456)
+..++.++.+|.+..+|.++|+.+.+............. .+..++.++.+|.+..+|.++|+................
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 456777888999999999999988776533221111111 245677788899999999999987653222110000000
Q ss_pred EecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCc-------cEEEEEeCC---CCeEEEEeCCCcEEEEECC
Q 012799 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL-------AVTCVKWGG---DGVIYTGSQDCTIKVWETT 269 (456)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~---~~~l~~~~~dg~i~iwd~~ 269 (456)
.-+|.. .+..++.++.+|.+..+|..+++.+........ ....+..+| ++.+++++.+|.+..+|..
T Consensus 198 ~~sP~v---~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 198 ESAPAT---AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred CCCCEE---ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 012211 234577788899999999998887655431100 011111122 4578888889999999999
Q ss_pred CCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCC
Q 012799 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS 349 (456)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 349 (456)
+|+.+....... ...+.. .+..++.++.+|.+..+|..++
T Consensus 275 tG~~~W~~~~~~--~~~~~~--------------------------------------~~~~vy~~~~~g~l~ald~~tG 314 (394)
T PRK11138 275 SGQIVWKREYGS--VNDFAV--------------------------------------DGGRIYLVDQNDRVYALDTRGG 314 (394)
T ss_pred CCCEEEeecCCC--ccCcEE--------------------------------------ECCEEEEEcCCCeEEEEECCCC
Confidence 998766543211 001111 1456888889999999998766
Q ss_pred CCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeeccc
Q 012799 350 KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMS 429 (456)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~ 429 (456)
...............+... .+.+|+.++.||.+.+.|..+|+.+...+.....+.+-.
T Consensus 315 ~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P-------------------- 372 (394)
T PRK11138 315 VELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEP-------------------- 372 (394)
T ss_pred cEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCC--------------------
Confidence 5433221111111122222 255788899999999999999999887764333332210
Q ss_pred ccccceeEecCCCeEEEeeCCCceEE
Q 012799 430 CCMSLYSWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 430 ~~~~~~~~s~dg~~l~s~s~Dg~v~i 455 (456)
.. .+..|+.++.||.|+.
T Consensus 373 ------~~--~~~~l~v~t~~G~l~~ 390 (394)
T PRK11138 373 ------VV--ADDKLLIQARDGTVYA 390 (394)
T ss_pred ------EE--ECCEEEEEeCCceEEE
Confidence 12 2457888899998864
No 274
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.26 E-value=3.9e-09 Score=85.21 Aligned_cols=224 Identities=10% Similarity=0.006 Sum_probs=142.9
Q ss_pred CCcEEEEeCCCCc--ceeEEecCCCCEEEEEEcC-----CCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEe
Q 012799 129 DTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSA-----DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISW 201 (456)
Q Consensus 129 d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~ 201 (456)
...+-+|+.-+.. .+... +.+.|.| ...+||.|+..|...+|.+.+.+........|...|+-+.-
T Consensus 51 t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred eeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence 3456677765433 11211 3344544 44589999999999999998776544333334333321110
Q ss_pred cccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCC-eEEEE--e
Q 012799 202 EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG-KLIRE--L 277 (456)
Q Consensus 202 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~-~~~~~--~ 277 (456)
. ......+..++.|.++++.+++-+..........-.+.++++++++ .+++.+....|..|.+... +.+.. .
T Consensus 124 ~----cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~ 199 (344)
T KOG4532|consen 124 Y----CDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYE 199 (344)
T ss_pred h----cccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEe
Confidence 0 0022356778888888888876554333332222348889999999 7777788888999988653 22222 1
Q ss_pred ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccc--
Q 012799 278 KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR-- 355 (456)
Q Consensus 278 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-- 355 (456)
......-.+.+|+.. ...++++..||++.|||++....+...
T Consensus 200 a~t~D~gF~~S~s~~------------------------------------~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 200 APTSDHGFYNSFSEN------------------------------------DLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred cccCCCceeeeeccC------------------------------------cceEEEEecCCcEEEEEecccccchhhhc
Confidence 222233344555554 456999999999999999877655432
Q ss_pred --cccccccEeEEEECCCCCE--EEEEECCCcEEEEeCCCCeEEEEEe
Q 012799 356 --MTGHQQLVNHVYFSPDGQW--VASASFDKSIKLWNGTTGKFVAVFR 399 (456)
Q Consensus 356 --~~~~~~~v~~~~~sp~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~ 399 (456)
-..|.+.++.+.|++-|.+ |+..-.-+.+.+.|+++++..+.+.
T Consensus 244 strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 244 STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence 2458899999999986653 5555556789999999987766554
No 275
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=99.25 E-value=4.3e-11 Score=77.03 Aligned_cols=62 Identities=34% Similarity=0.599 Sum_probs=57.9
Q ss_pred eEEEEEECCCC--CCCCCcEEeeCCCCHHHHHHHHHHhh-cCCCCCceeEEecCeeeeechhhhH
Q 012799 10 NVMCLLTDPEG--NPLGAPMYFPQNAGPQQLSQIVNKLL-NNEEKLPYAFYISDHELLVPLGSYL 71 (456)
Q Consensus 10 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (456)
+|+|.|.++.+ ..++.|+.+|.+.++.+|+.++|+|+ ..++++||+|++++.+++.+|++++
T Consensus 1 qv~v~F~t~~~~~~~~~~~~~VP~~~t~~~Ls~LvN~LL~~~~~~vpfdF~i~~~~lr~sL~~~l 65 (65)
T PF08154_consen 1 QVQVQFVTEDGEYEVPGTPISVPSNITRKELSELVNQLLDDEEEPVPFDFLINGEELRTSLEEHL 65 (65)
T ss_pred CEEEEEEcCCCCccCCCCCEEEeCCCCHHHHHHHHHHHhccCCCCCcEEEEECCEEeechHHHhC
Confidence 58999998876 89999999999999999999999999 8889999999999999999998764
No 276
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=1.7e-09 Score=99.74 Aligned_cols=106 Identities=19% Similarity=0.210 Sum_probs=80.7
Q ss_pred ccccccccCCcccEEEEEECCCC------------CeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcC---CC
Q 012799 98 NRCSATIAGHTEAVLSVAFSPDG------------RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA---DG 162 (456)
Q Consensus 98 ~~~~~~l~~h~~~V~~~~~s~~~------------~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~---~~ 162 (456)
-+.++.+..|...|+.+.|.|-. -+||++...|.|.+||...+..+..+..|.+++..++|-+ +.
T Consensus 45 ~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~S 124 (1062)
T KOG1912|consen 45 LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDS 124 (1062)
T ss_pred hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcc
Confidence 34567788899999999998731 2577888889999999999988888999999999999987 33
Q ss_pred -CEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEeccc
Q 012799 163 -KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPV 204 (456)
Q Consensus 163 -~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 204 (456)
..|++-.....+.+|+..+|+...+...+ .....++.+.|.
T Consensus 125 rd~LlaIh~ss~lvLwntdtG~k~Wk~~ys-~~iLs~f~~DPf 166 (1062)
T KOG1912|consen 125 RDVLLAIHGSSTLVLWNTDTGEKFWKYDYS-HEILSCFRVDPF 166 (1062)
T ss_pred hheeEEecCCcEEEEEEccCCceeeccccC-CcceeeeeeCCC
Confidence 46666677789999999999876532222 233445666663
No 277
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.22 E-value=5.1e-08 Score=97.73 Aligned_cols=271 Identities=17% Similarity=0.238 Sum_probs=153.1
Q ss_pred CcccEEEEEECCCCCeEEEEECCCcEEEEeCC---------------C--------CcceeEEec---------------
Q 012799 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN---------------T--------QTPMFKCTG--------------- 148 (456)
Q Consensus 107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~---------------~--------~~~~~~~~~--------------- 148 (456)
-...|.+++||||+.+||..+.++++.+-+-+ . |+....+.|
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~ 198 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV 198 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence 36689999999999999999999988886421 0 111111110
Q ss_pred ---------CCCCEEEEEEcCCCCEEEEEeC---C---CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEE
Q 012799 149 ---------HKNWVLCIAWSADGKHLVSGSK---A---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213 (456)
Q Consensus 149 ---------~~~~v~~~~~~~~~~~l~s~~~---d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l 213 (456)
+...-..++|..||.++|+.+. . ..++||+-+ |.... ....-.+--.+++|.| .|+.+
T Consensus 199 ~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~s-tSE~v~gLe~~l~WrP-----sG~lI 271 (928)
T PF04762_consen 199 PKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQS-TSEPVDGLEGALSWRP-----SGNLI 271 (928)
T ss_pred CccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEe-ccccCCCccCCccCCC-----CCCEE
Confidence 2335567899999999998764 2 479999976 54332 2223333445789999 89999
Q ss_pred EEEeC---CCcEEEEECCC---CeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeE--EEEeec-CCcc
Q 012799 214 VSASK---DGDARIWDVSL---RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKL--IRELKG-HGHW 283 (456)
Q Consensus 214 ~~~~~---dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~--~~~~~~-~~~~ 283 (456)
++... ...|.+|.-+. ++....+......|..+.|++++ .|+....| .|.+|-..+..- .+.+.. ....
T Consensus 272 A~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHWYLKqei~~~~~~~ 350 (928)
T PF04762_consen 272 ASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYHWYLKQEIRFSSSES 350 (928)
T ss_pred EEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCEEEEEEEEEccCCCC
Confidence 88765 34566776432 22222222456789999999999 55555544 499999887653 223322 2233
Q ss_pred eEEEEecCcceeeeccccCCCCc--cCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC--Ccc-cccc
Q 012799 284 VNSLALSTEYALRTGAFDHTGKQ--YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ--PKT-RMTG 358 (456)
Q Consensus 284 i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~-~~~~ 358 (456)
+..+.|+|............+.. +...-. ........+...-++..-+...+.+-.++.... +.. ....
T Consensus 351 ~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~------v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~ 424 (928)
T PF04762_consen 351 VNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD------VSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE 424 (928)
T ss_pred CCceEECCCCCCEEEEEecCCcEEEEEEEEE------EEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc
Confidence 45588888643221111110000 000000 000000000011111111222333333332221 111 1112
Q ss_pred ccccEeEEEECCCCCEEEEEECCCcEEEEeCCC
Q 012799 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391 (456)
Q Consensus 359 ~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 391 (456)
-..+|.+++|++++..+++-..||.+.+|....
T Consensus 425 ~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 425 LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 356799999999988899999999999998544
No 278
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.22 E-value=3.4e-10 Score=96.42 Aligned_cols=162 Identities=17% Similarity=0.299 Sum_probs=120.1
Q ss_pred cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce---eEEecCCCCEEEEEEcCCCCEEEEE---eCCCeEEEEeCCCCC
Q 012799 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM---FKCTGHKNWVLCIAWSADGKHLVSG---SKAGELQCWDPQTGK 183 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~---~~dg~i~vwd~~~~~ 183 (456)
.+..+..++.+++||.+..+....++++...... .....-...-+++.|..+......+ +....+.+|....+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 4455667888899998888888777777654331 1111223334555555555555444 344556666666544
Q ss_pred CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCcCccEEEEEeCCCCeEEEEeCCCc
Q 012799 184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-SGHTLAVTCVKWGGDGVIYTGSQDCT 262 (456)
Q Consensus 184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~l~~~~~dg~ 262 (456)
.. ...+|-..+++++|+| |+++++++..|..|++-....-..+..+ .||..-|..++..++..|++++.|++
T Consensus 144 ~~--~~lGhvSml~dVavS~-----D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~t 216 (390)
T KOG3914|consen 144 CE--PILGHVSMLLDVAVSP-----DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKT 216 (390)
T ss_pred cc--hhhhhhhhhheeeecC-----CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCc
Confidence 43 6889999999999999 8899999999999999887766555555 57999999999998889999999999
Q ss_pred EEEEECCCCeEEEEee
Q 012799 263 IKVWETTQGKLIRELK 278 (456)
Q Consensus 263 i~iwd~~~~~~~~~~~ 278 (456)
+++||+++|+.+.++.
T Consensus 217 lr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 217 LRLWDITSGKLLDTCD 232 (390)
T ss_pred EEEEecccCCcccccc
Confidence 9999999999886664
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.21 E-value=2.4e-08 Score=102.00 Aligned_cols=262 Identities=13% Similarity=0.120 Sum_probs=151.5
Q ss_pred EEEEECCC-CCeEEEEECCCcEEEEeCCCCcceeEEec--------------CCCCEEEEEEcCCCCEEEEEeC-CCeEE
Q 012799 112 LSVAFSPD-GRQLASGSGDTTVRLWDLNTQTPMFKCTG--------------HKNWVLCIAWSADGKHLVSGSK-AGELQ 175 (456)
Q Consensus 112 ~~~~~s~~-~~~l~~~~~d~~v~vwd~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~s~~~-dg~i~ 175 (456)
..++++++ ++++++-+.++.|++||... ..+..+.+ .-.....+++.++++.|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788874 56677767788999999764 43333322 1123678999998887666544 56799
Q ss_pred EEeCCCCCCcccc--------ccCc-------ccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC--
Q 012799 176 CWDPQTGKPSGNP--------LSGH-------KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG-- 238 (456)
Q Consensus 176 vwd~~~~~~~~~~--------~~~~-------~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-- 238 (456)
++|+.++...... ..+. -..-..++++|. ++..+++.+.++.|++||..++.... +.+
T Consensus 650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~----~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G 724 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV----NEKVYIAMAGQHQIWEYNISDGVTRV-FSGDG 724 (1057)
T ss_pred EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC----CCeEEEEECCCCeEEEEECCCCeEEE-EecCC
Confidence 9998765432100 0000 112346777762 34566666778899999987765432 111
Q ss_pred -------------cCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCC
Q 012799 239 -------------HTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHT 303 (456)
Q Consensus 239 -------------~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 303 (456)
.-.....++++|++ .+++-+.++.|++||+.++.......+ .++. +......+..+..
T Consensus 725 ~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg--~~~~-----~~~l~~fG~~dG~ 797 (1057)
T PLN02919 725 YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGG--DPTF-----SDNLFKFGDHDGV 797 (1057)
T ss_pred ccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEec--cccc-----CcccccccCCCCc
Confidence 01234679999987 444555678999999987653211110 0000 0000000000000
Q ss_pred CCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccc------------cccccccEeEEEECCC
Q 012799 304 GKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR------------MTGHQQLVNHVYFSPD 371 (456)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------------~~~~~~~v~~~~~sp~ 371 (456)
. ..............++++.+++-..++.|++||..+....... ..+.-.....++++++
T Consensus 798 g--------~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d 869 (1057)
T PLN02919 798 G--------SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN 869 (1057)
T ss_pred h--------hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCC
Confidence 0 0000000011112344667888888999999997543211100 1112235778999999
Q ss_pred CCEEEEEECCCcEEEEeCCCCeE
Q 012799 372 GQWVASASFDKSIKLWNGTTGKF 394 (456)
Q Consensus 372 ~~~l~s~~~dg~i~iwd~~~~~~ 394 (456)
|+++++-+.++.|++||+.+++.
T Consensus 870 G~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 870 GRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCEEEEECCCCEEEEEECCCCcc
Confidence 99999888999999999988765
No 280
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=8.7e-10 Score=100.73 Aligned_cols=233 Identities=14% Similarity=0.244 Sum_probs=154.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC--------------ccccccCcccceEEEEecccccCCCCCEEE
Q 012799 149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP--------------SGNPLSGHKKWITGISWEPVHLNAPCRRFV 214 (456)
Q Consensus 149 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ 214 (456)
......|++|+....+++.|+.||.+++..+.+... ..+.+.+|...|.-+.|.. +.+.|-
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-----~~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-----NNQKLT 87 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-----cccccc
Confidence 445678999999999999999999999998765321 2235779999999999988 778899
Q ss_pred EEeCCCcEEEEECCCCeEEEEe--cCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecC
Q 012799 215 SASKDGDARIWDVSLRKCVICL--SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALST 291 (456)
Q Consensus 215 ~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~ 291 (456)
+...+|.|.+|-+-.++-...+ ...++.|.+++|..+| .+.....||.|.+=.+...+. .--.........+.|++
T Consensus 88 tSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI-wgKeLkg~~l~hv~ws~ 166 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI-WGKELKGQLLAHVLWSE 166 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee-cchhcchheccceeecc
Confidence 9999999999988766532222 2345678999999999 888889999888766654322 11111122234567777
Q ss_pred cceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccc----------cccccc
Q 012799 292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR----------MTGHQQ 361 (456)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----------~~~~~~ 361 (456)
+. +.++.+-.+|.+.+||....-..... +.....
T Consensus 167 D~------------------------------------~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~ 210 (1189)
T KOG2041|consen 167 DL------------------------------------EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPT 210 (1189)
T ss_pred cH------------------------------------HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCc
Confidence 73 33566667788888884332111100 000111
Q ss_pred cEeEEEEC--------CCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeeccccccc
Q 012799 362 LVNHVYFS--------PDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMS 433 (456)
Q Consensus 362 ~v~~~~~s--------p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (456)
.|..+.|. ||...|+.+-..|.+.|-.-.+......+.. .-.+...
T Consensus 211 kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt-gm~~vga------------------------- 264 (1189)
T KOG2041|consen 211 KIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT-GMKIVGA------------------------- 264 (1189)
T ss_pred cccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec-ccEeecc-------------------------
Confidence 13344442 4777888888888888875443322222221 1344555
Q ss_pred ceeEecCCCeEEEeeCCC
Q 012799 434 LYSWSADSRLLLSGSKDS 451 (456)
Q Consensus 434 ~~~~s~dg~~l~s~s~Dg 451 (456)
.|+++|..|+.+|.|.
T Consensus 265 --kWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 265 --KWNHNGAVLAVCGNDS 280 (1189)
T ss_pred --eecCCCcEEEEccCcc
Confidence 8999999999988753
No 281
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.17 E-value=7.4e-08 Score=79.20 Aligned_cols=247 Identities=17% Similarity=0.180 Sum_probs=138.0
Q ss_pred EEECCCCCeEEEEECCCcEEEEeCCCC--cceeEEec---CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc--
Q 012799 114 VAFSPDGRQLASGSGDTTVRLWDLNTQ--TPMFKCTG---HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG-- 186 (456)
Q Consensus 114 ~~~s~~~~~l~~~~~d~~v~vwd~~~~--~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-- 186 (456)
++.+.+|++||.- .|..|.|-..+.. ..+.+.+- ..-.=..++|+||+.+||.+...|+|+++|+.......
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence 5678899988876 5667777655432 22222222 22234689999999999999999999999997543211
Q ss_pred ---ccccCcccceEEEEecccccCCC-CCEEEEEeCCCcEEEEECCC-----CeEEEEe--c-CcCccEEEEEeCCCC-e
Q 012799 187 ---NPLSGHKKWITGISWEPVHLNAP-CRRFVSASKDGDARIWDVSL-----RKCVICL--S-GHTLAVTCVKWGGDG-V 253 (456)
Q Consensus 187 ---~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~-----~~~~~~~--~-~~~~~v~~~~~~~~~-~ 253 (456)
.........|..+.|.+...+.. ...|++-..+|.++-|-+.. .+....+ . .+...|.++.++|.. .
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L 161 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL 161 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCE
Confidence 01112235677777876543222 23577777788888776532 2222332 2 246789999999987 5
Q ss_pred EEEEeC-CCcEEEEECCCCeEEEEeecCCcceEEEEe---cCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCC
Q 012799 254 IYTGSQ-DCTIKVWETTQGKLIRELKGHGHWVNSLAL---STEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (456)
Q Consensus 254 l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (456)
|++|+. ...-..+. .....+++-.+ .|.+..... . +.
T Consensus 162 LlVgG~~~~~~~~s~-----------a~~~GLtaWRiL~~~Pyyk~v~~-~---------------------------~~ 202 (282)
T PF15492_consen 162 LLVGGCEQNQDGMSK-----------ASSCGLTAWRILSDSPYYKQVTS-S---------------------------ED 202 (282)
T ss_pred EEEeccCCCCCcccc-----------ccccCceEEEEcCCCCcEEEccc-c---------------------------Cc
Confidence 555544 32100000 00111111111 111110000 0 00
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEeccccc
Q 012799 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP 404 (456)
Q Consensus 330 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 404 (456)
+.-...... .+|.+... ............|..|..||||++||+...+|.|.+|++.+.++......+..|
T Consensus 203 ~~~~~~~~~---~~~~~~~~-~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eqP 273 (282)
T PF15492_consen 203 DITASSKRR---GLLRIPSF-KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQP 273 (282)
T ss_pred ccccccccc---ceeeccce-eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhCC
Confidence 000011111 12221110 011111234567999999999999999999999999999998887776654443
No 282
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.16 E-value=1.9e-09 Score=88.83 Aligned_cols=241 Identities=18% Similarity=0.314 Sum_probs=158.2
Q ss_pred CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc-----ceeEEecCC------------CCEEEEEEcCCC--CEEEE
Q 012799 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-----PMFKCTGHK------------NWVLCIAWSADG--KHLVS 167 (456)
Q Consensus 107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~s 167 (456)
..+.|+++.|...|.+|++|...|.|.+|.-+... ....+++|. ..|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35679999999999999999988999999755432 122344553 357888887643 36777
Q ss_pred EeCCCeEEEEeCCCCCCc-------------------c----------------------c-cccCcccceEEEEecccc
Q 012799 168 GSKAGELQCWDPQTGKPS-------------------G----------------------N-PLSGHKKWITGISWEPVH 205 (456)
Q Consensus 168 ~~~dg~i~vwd~~~~~~~-------------------~----------------------~-~~~~~~~~v~~~~~~~~~ 205 (456)
.+.|.+|++|.+...... . + ....|...+.++.+..
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-- 182 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-- 182 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC--
Confidence 788999999988644100 0 0 0123444455555544
Q ss_pred cCCCCCEEEEEeCCCcEEEEECCCCe---EEEEecCcC-----ccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEE
Q 012799 206 LNAPCRRFVSASKDGDARIWDVSLRK---CVICLSGHT-----LAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIR 275 (456)
Q Consensus 206 ~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~-----~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~ 275 (456)
+...++++ .|=.|.+|+++... .+..++.|. .-|++..|+|.. .+.-.+..|.|++-|++......
T Consensus 183 ---D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcd 258 (460)
T COG5170 183 ---DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCD 258 (460)
T ss_pred ---chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhcc
Confidence 55666554 45789999886432 233344443 358888999966 77778889999999998543211
Q ss_pred ----Ee------------ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC
Q 012799 276 ----EL------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339 (456)
Q Consensus 276 ----~~------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 339 (456)
.+ ..-...|..+.|+++ +.+++ +..=-
T Consensus 259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~n------------------------------------gryIl-sRdyl 301 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDN------------------------------------GRYIL-SRDYL 301 (460)
T ss_pred CchhhhhhccCcccchhHHHHhhhhcceEEcCC------------------------------------CcEEE-Eeccc
Confidence 01 111234555566655 33344 34456
Q ss_pred cEEEEecCCCCCCccccccccc------------cE---eEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799 340 TMFLWEPAVSKQPKTRMTGHQQ------------LV---NHVYFSPDGQWVASASFDKSIKLWNGT 390 (456)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~------------~v---~~~~~sp~~~~l~s~~~dg~i~iwd~~ 390 (456)
++++||.+..+.++..+.-|.. .| ..+.||.|.+.+.+|+..+..-+|-..
T Consensus 302 tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 302 TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 8999999888877776644432 22 357889999999999999888888643
No 283
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.15 E-value=2.4e-07 Score=78.61 Aligned_cols=256 Identities=14% Similarity=0.147 Sum_probs=157.8
Q ss_pred CCcEEEEeCCCCcc---eeEEecCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCC--CCCcccc-ccCcccceEEE
Q 012799 129 DTTVRLWDLNTQTP---MFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQT--GKPSGNP-LSGHKKWITGI 199 (456)
Q Consensus 129 d~~v~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~~~--~~~~~~~-~~~~~~~v~~~ 199 (456)
+.-|++|++.+..- ...+-.....++-|+|+|++++|.++..+ |.|..|.++. |+....- ......+-..+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 45699999884321 12223567788999999999999988655 6677777664 4432110 11111223677
Q ss_pred EecccccCCCCCEEEEEeC-CCcEEEEECCC-CeEEE--EecCcCcc----------EEEEEeCCCC-eEEEEeC-CCcE
Q 012799 200 SWEPVHLNAPCRRFVSASK-DGDARIWDVSL-RKCVI--CLSGHTLA----------VTCVKWGGDG-VIYTGSQ-DCTI 263 (456)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~-~~~~~--~~~~~~~~----------v~~~~~~~~~-~l~~~~~-dg~i 263 (456)
+.++ ++++++++.. .|.|.++-++. |.... ....|.+. +....+.|++ ++++... --.|
T Consensus 95 svd~-----~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri 169 (346)
T COG2706 95 SVDE-----DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRI 169 (346)
T ss_pred EECC-----CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceE
Confidence 7777 8888888765 57899998854 32211 12224333 7888899999 5555443 2369
Q ss_pred EEEECCCCeEEEEe---ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCc
Q 012799 264 KVWETTQGKLIREL---KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (456)
Q Consensus 264 ~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 340 (456)
.+|++..|+....- -..+..-+-|.|+|++.+. .+..--+++
T Consensus 170 ~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~a-----------------------------------Y~v~EL~st 214 (346)
T COG2706 170 FLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYA-----------------------------------YLVNELNST 214 (346)
T ss_pred EEEEcccCccccccccccCCCCCcceEEEcCCCcEE-----------------------------------EEEeccCCE
Confidence 99999977653221 1345567889999985442 333445788
Q ss_pred EEEEecCCCCCCccccc---------cccccEeEEEECCCCCEEEEEEC-CCcEEEEeCCC--CeEEE--EEecccccEE
Q 012799 341 MFLWEPAVSKQPKTRMT---------GHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGTT--GKFVA--VFRGHVGPVY 406 (456)
Q Consensus 341 i~iwd~~~~~~~~~~~~---------~~~~~v~~~~~sp~~~~l~s~~~-dg~i~iwd~~~--~~~~~--~~~~~~~~v~ 406 (456)
|.+|...........+. ........+.++|||++|.++.. ...|-+|.+.. +++.. ....+...-.
T Consensus 215 V~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR 294 (346)
T COG2706 215 VDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPR 294 (346)
T ss_pred EEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCc
Confidence 88888665422111111 12346778999999999988642 23677776654 33211 1111211122
Q ss_pred EEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCC
Q 012799 407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS 451 (456)
Q Consensus 407 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg 451 (456)
.. .+++.|++|+++..|+
T Consensus 295 ~F---------------------------~i~~~g~~Liaa~q~s 312 (346)
T COG2706 295 DF---------------------------NINPSGRFLIAANQKS 312 (346)
T ss_pred cc---------------------------eeCCCCCEEEEEccCC
Confidence 22 7899999999998764
No 284
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.15 E-value=3.3e-07 Score=80.36 Aligned_cols=140 Identities=19% Similarity=0.206 Sum_probs=114.1
Q ss_pred cCCcccEEEEEECCCCCeEEEEECCC-cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 012799 105 AGHTEAVLSVAFSPDGRQLASGSGDT-TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (456)
Q Consensus 105 ~~h~~~V~~~~~s~~~~~l~~~~~d~-~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 183 (456)
-+|.+.|.-..+.-+++-++.|..|| .+-|+|.++++ ...+...-+.|.++..+++|++++.+.....+.+.|+++|+
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 36888899999999988999999999 89999998766 44556677889999999999999999999999999999998
Q ss_pred CccccccCcccceEEEEecccccCCCCCEEEEEeCCC----cEEEEECCCCeEEEEecCcCccEEEEEeCCCC
Q 012799 184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG----DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG 252 (456)
Q Consensus 184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 252 (456)
... .-....+-|+...|+| +++.+|.+--+| .|+++|+..++...... ..+.=.+-+|.|++
T Consensus 435 v~~-idkS~~~lItdf~~~~-----nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ 500 (668)
T COG4946 435 VRL-IDKSEYGLITDFDWHP-----NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDG 500 (668)
T ss_pred eeE-ecccccceeEEEEEcC-----CceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCC
Confidence 654 4556678899999999 889999887665 68999999887655433 23333456788888
No 285
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.14 E-value=4.7e-09 Score=86.56 Aligned_cols=215 Identities=15% Similarity=0.279 Sum_probs=140.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC-cc---ccccCcc------------cceEEEEecccccCCCCCE
Q 012799 149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP-SG---NPLSGHK------------KWITGISWEPVHLNAPCRR 212 (456)
Q Consensus 149 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~---~~~~~~~------------~~v~~~~~~~~~~~~~~~~ 212 (456)
....|+++.|...|.||++|...|.|.+|.-+.... .. +.+++|. ..|..+.|.... .-..
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t---~r~h 101 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT---GRNH 101 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCC---Ccce
Confidence 456789999999999999999999999997654331 11 1123332 346677776522 3457
Q ss_pred EEEEeCCCcEEEEECCCCeE------------------------------------------EEEe-cCcCccEEEEEeC
Q 012799 213 FVSASKDGDARIWDVSLRKC------------------------------------------VICL-SGHTLAVTCVKWG 249 (456)
Q Consensus 213 l~~~~~dg~i~iwd~~~~~~------------------------------------------~~~~-~~~~~~v~~~~~~ 249 (456)
++..+.|.+|++|.+..... .+.. ..|.-.|.++.+.
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N 181 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN 181 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence 88889999999998643200 0011 3466678889998
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeE---EEEeecCC-----cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhh
Q 012799 250 GDGVIYTGSQDCTIKVWETTQGKL---IRELKGHG-----HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321 (456)
Q Consensus 250 ~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (456)
.+...+..+.|=.|.+|++.-... +..++.|. ..|++..|+|..
T Consensus 182 sD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~---------------------------- 233 (460)
T COG5170 182 SDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEM---------------------------- 233 (460)
T ss_pred CchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhH----------------------------
Confidence 888555567778899999864321 12222221 234555555542
Q ss_pred hhccCCCCCEEEEEeCCCcEEEEecCCCCCCc-----c----------ccccccccEeEEEECCCCCEEEEEECCCcEEE
Q 012799 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK-----T----------RMTGHQQLVNHVYFSPDGQWVASASFDKSIKL 386 (456)
Q Consensus 322 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----~----------~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~i 386 (456)
.+.+..++..|.|++-|++...... . .+.+-...|..+.|+++|+++++-+. -+|+|
T Consensus 234 -------cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvki 305 (460)
T COG5170 234 -------CNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKI 305 (460)
T ss_pred -------cceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEE
Confidence 4457788899999999988543211 1 11222346889999999999988654 57999
Q ss_pred EeCCC-CeEEEEEeccc
Q 012799 387 WNGTT-GKFVAVFRGHV 402 (456)
Q Consensus 387 wd~~~-~~~~~~~~~~~ 402 (456)
||++. ..++.++.-|.
T Consensus 306 wDvnm~k~pikTi~~h~ 322 (460)
T COG5170 306 WDVNMAKNPIKTIPMHC 322 (460)
T ss_pred EecccccCCceeechHH
Confidence 99986 45577765554
No 286
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.13 E-value=1.1e-06 Score=74.82 Aligned_cols=252 Identities=14% Similarity=0.201 Sum_probs=160.1
Q ss_pred ccCCcccEEEEEECCCCCeEEEEEC---CCcEEEEeCCC--Cccee--EEecCCCCEEEEEEcCCCCEEEEEeC-CCeEE
Q 012799 104 IAGHTEAVLSVAFSPDGRQLASGSG---DTTVRLWDLNT--QTPMF--KCTGHKNWVLCIAWSADGKHLVSGSK-AGELQ 175 (456)
Q Consensus 104 l~~h~~~V~~~~~s~~~~~l~~~~~---d~~v~vwd~~~--~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~ 175 (456)
+-.+.+.++-++|+|+++.|.++-. +|.|..|.++. |+... .......+.+.+++++++++++++.. .|.|.
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 4457788899999999999988854 57788888775 33221 11122334488999999999998876 57899
Q ss_pred EEeCCC-CCCccc-cccCcccc----------eEEEEecccccCCCCCEEEEEeC-CCcEEEEECCCCeEEEEe---cCc
Q 012799 176 CWDPQT-GKPSGN-PLSGHKKW----------ITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVICL---SGH 239 (456)
Q Consensus 176 vwd~~~-~~~~~~-~~~~~~~~----------v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~---~~~ 239 (456)
++-++. |..... ....|.+. +....+.| +++++++.+. --.|.+|++..++....- -..
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-----~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~ 189 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-----DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP 189 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-----CCCEEEEeecCCceEEEEEcccCccccccccccCC
Confidence 999865 332211 12223333 56667777 8889888765 236999999876543221 133
Q ss_pred CccEEEEEeCCCC-e-EEEEeCCCcEEEEECCCC-eEEEEeec---------CCcceEEEEecCcceeeeccccCCCCcc
Q 012799 240 TLAVTCVKWGGDG-V-IYTGSQDCTIKVWETTQG-KLIRELKG---------HGHWVNSLALSTEYALRTGAFDHTGKQY 307 (456)
Q Consensus 240 ~~~v~~~~~~~~~-~-l~~~~~dg~i~iwd~~~~-~~~~~~~~---------~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 307 (456)
...-+.|.|+|++ . .++.-.+++|.+|..... ..+..++. ...+...|.+++++
T Consensus 190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dG-------------- 255 (346)
T COG2706 190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDG-------------- 255 (346)
T ss_pred CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCC--------------
Confidence 4567899999999 3 344566899999998763 22222221 22345667777774
Q ss_pred CChHHHHHHHHhhhhhccCCCCCEEEEEeC-CCcEEEEecCCCCCCcc---ccccccccEeEEEECCCCCEEEEEECCC-
Q 012799 308 SSPEEMKKAALERYNKIKGNAPERLVSGSD-DFTMFLWEPAVSKQPKT---RMTGHQQLVNHVYFSPDGQWVASASFDK- 382 (456)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~sp~~~~l~s~~~dg- 382 (456)
++|.++.. ...|.+|.+......+. ....+....+...|+|+|++|+++..++
T Consensus 256 ----------------------rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd 313 (346)
T COG2706 256 ----------------------RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSD 313 (346)
T ss_pred ----------------------CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCC
Confidence 43444322 23566666554433222 1223334478899999999988887664
Q ss_pred cEEEEeC--CCCeEEE
Q 012799 383 SIKLWNG--TTGKFVA 396 (456)
Q Consensus 383 ~i~iwd~--~~~~~~~ 396 (456)
.|.+|.+ .+|++-.
T Consensus 314 ~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 314 NITVFERDKETGRLTL 329 (346)
T ss_pred cEEEEEEcCCCceEEe
Confidence 6777754 4566543
No 287
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.11 E-value=1.2e-07 Score=81.18 Aligned_cols=225 Identities=16% Similarity=0.068 Sum_probs=138.5
Q ss_pred CCcEEEEeCCCCcceeEEecC--CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEeccccc
Q 012799 129 DTTVRLWDLNTQTPMFKCTGH--KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206 (456)
Q Consensus 129 d~~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 206 (456)
+|+|..||..+++.+....-. .....+. ..+++..+++++.++.+..||..+|+.............. ...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~----- 74 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-PVV----- 74 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-EEE-----
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce-eee-----
Confidence 688999999999988877531 1222211 2236667888889999999999999865432221110011 111
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCcC-----ccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecC
Q 012799 207 NAPCRRFVSASKDGDARIWDVSLRKCVICL-SGHT-----LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGH 280 (456)
Q Consensus 207 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~-----~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 280 (456)
.+..+++++.++.++.+|..+++.+... .... .......+. .+.++++..++.|..+|+++|+.+......
T Consensus 75 --~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~ 151 (238)
T PF13360_consen 75 --DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVG 151 (238)
T ss_dssp --ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred --cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence 4567777888899999999999998874 3221 111222222 337888888999999999999998887653
Q ss_pred Ccce-EEEE-ecCc-ceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccc
Q 012799 281 GHWV-NSLA-LSTE-YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT 357 (456)
Q Consensus 281 ~~~i-~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 357 (456)
.... ..+. +... ... .. .+..++.+..++.+..+|+.++.... ...
T Consensus 152 ~~~~~~~~~~~~~~~~~~-----------------------------~~-~~~~v~~~~~~g~~~~~d~~tg~~~w-~~~ 200 (238)
T PF13360_consen 152 EPRGSSPISSFSDINGSP-----------------------------VI-SDGRVYVSSGDGRVVAVDLATGEKLW-SKP 200 (238)
T ss_dssp TT-SS--EEEETTEEEEE-----------------------------EC-CTTEEEEECCTSSEEEEETTTTEEEE-EEC
T ss_pred CCCCCcceeeecccccce-----------------------------EE-ECCEEEEEcCCCeEEEEECCCCCEEE-Eec
Confidence 3221 1110 0000 000 00 02257777777764444877766332 222
Q ss_pred cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEE
Q 012799 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV 397 (456)
Q Consensus 358 ~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~ 397 (456)
...+..+ ...++..|+.++.++.+..||+++|+.+.+
T Consensus 201 --~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 201 --ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp --SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred --CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 1222221 345677888888999999999999998654
No 288
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=1.7e-08 Score=93.44 Aligned_cols=242 Identities=14% Similarity=0.169 Sum_probs=167.8
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEeccccc-----C--CCCCEEEEEeCCCcE
Q 012799 150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL-----N--APCRRFVSASKDGDA 222 (456)
Q Consensus 150 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~--~~~~~l~~~~~dg~i 222 (456)
...-.++.|+|.| +||.|+. ..|.+-|..+-+.+. .+..|...|+.+.|.|... + ...-.++++.-.|.|
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iq-sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQ-SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhhhhh-ccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 3345678899877 6677664 478999988887765 6778899999999998432 1 133467788889999
Q ss_pred EEEECCCCeEEEEecCcCccEEEEEeCCC---C--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeee
Q 012799 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGD---G--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRT 297 (456)
Q Consensus 223 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 297 (456)
.+||...+..+..+..|..++..++|-+. . .|++-....++.+|+..+|+.+...........++.+.|-.
T Consensus 92 il~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd---- 167 (1062)
T KOG1912|consen 92 ILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFD---- 167 (1062)
T ss_pred EEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCC----
Confidence 99999999988889999999999999762 2 67777888899999999999998888777777778877752
Q ss_pred ccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC------Cccccccccc----------
Q 012799 298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ------PKTRMTGHQQ---------- 361 (456)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~---------- 361 (456)
...+..-+..|.+.+-+.....+ ..+....|.+
T Consensus 168 -------------------------------~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at 216 (1062)
T KOG1912|consen 168 -------------------------------SRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETAT 216 (1062)
T ss_pred -------------------------------cceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhc
Confidence 23344444444444443221110 0000011111
Q ss_pred ---------------cEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeee
Q 012799 362 ---------------LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV 426 (456)
Q Consensus 362 ---------------~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~ 426 (456)
....++|+|.-+-++.......+.++|++-..++.+..-..+.+.-+
T Consensus 217 ~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv------------------ 278 (1062)
T KOG1912|consen 217 GNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFV------------------ 278 (1062)
T ss_pred cccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCccee------------------
Confidence 01235778876555555567789999998888777766444433333
Q ss_pred cccccccceeEecCC--CeEEEeeCCCceEEC
Q 012799 427 DMSCCMSLYSWSADS--RLLLSGSKDSTLKVT 456 (456)
Q Consensus 427 ~~~~~~~~~~~s~dg--~~l~s~s~Dg~v~iW 456 (456)
.|-|++ ..|+..-.||.+-||
T Consensus 279 ---------~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 279 ---------DVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred ---------EeccCCCcceEEEEecCCeEEEE
Confidence 556665 478999999999887
No 289
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.09 E-value=5.3e-09 Score=84.09 Aligned_cols=195 Identities=15% Similarity=0.166 Sum_probs=116.4
Q ss_pred EEEEEECCCCCeEEEEECCCcEEEEeCCCCc------------ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 012799 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQT------------PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (456)
Q Consensus 111 V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 178 (456)
|+.+.++.+. .|+++..++.+..+....+. +.+.+.-|..+-.+-+.+-.++.++++..||.+.+.+
T Consensus 39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 5555565443 46666666555554433222 2222333333333333333567899999999999999
Q ss_pred CCCCCCccccc-cCcccceEEEEecccccCCCCCEEEEEeC-----CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC
Q 012799 179 PQTGKPSGNPL-SGHKKWITGISWEPVHLNAPCRRFVSASK-----DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG 252 (456)
Q Consensus 179 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 252 (456)
.+.-....... ..|.+ -.+.++.. .++.+.+++- -+..+.|+++..+....-+.....|++++-+|..
T Consensus 118 ~~~~~~~~~~i~~~~~~-~as~~~~~-----~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~q 191 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSG-SASRKICR-----HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQ 191 (319)
T ss_pred chHHHhhhhhccccccc-ccccceee-----cccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCccc
Confidence 87622211111 11111 11111111 2333333321 2345666666544333322333458999998855
Q ss_pred --eEEEEeCCCcEEEEECCCCeE-EEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCC
Q 012799 253 --VIYTGSQDCTIKVWETTQGKL-IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (456)
Q Consensus 253 --~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (456)
.+++|+.||.+.+||.+.... ...+..|..++..+-|+|. ++
T Consensus 192 q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk-----------------------------------~p 236 (319)
T KOG4714|consen 192 QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK-----------------------------------NP 236 (319)
T ss_pred ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC-----------------------------------Cc
Confidence 888899999999999998743 3445779999999999997 36
Q ss_pred CEEEEEeCCCcEEEEecC
Q 012799 330 ERLVSGSDDFTMFLWEPA 347 (456)
Q Consensus 330 ~~l~~~~~dg~i~iwd~~ 347 (456)
+.|+++++||.+..||..
T Consensus 237 ~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 237 EHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred hheeEecCCCcEEEEcCC
Confidence 779999999999999944
No 290
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.09 E-value=6.9e-07 Score=76.80 Aligned_cols=207 Identities=17% Similarity=0.181 Sum_probs=135.7
Q ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE
Q 012799 154 LCIAWSA-DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC 232 (456)
Q Consensus 154 ~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 232 (456)
.++.|.+ ++.++++--..+.|..|+..++......... ...+.+.. .+..++.+..++ +.++|..+++.
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~-----~~g~l~v~~~~~-~~~~d~~~g~~ 72 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDR-----PDGRLYVADSGG-IAVVDPDTGKV 72 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEEC-----TTSEEEEEETTC-EEEEETTTTEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEc-----cCCEEEEEEcCc-eEEEecCCCcE
Confidence 3678888 6667777667899999999887654311111 56667663 224566666544 55669988865
Q ss_pred EEEecC-----cCccEEEEEeCCCCeEEEEeC-C--------CcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeec
Q 012799 233 VICLSG-----HTLAVTCVKWGGDGVIYTGSQ-D--------CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG 298 (456)
Q Consensus 233 ~~~~~~-----~~~~v~~~~~~~~~~l~~~~~-d--------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 298 (456)
...... .....+.+++.++|.++.+.. . |.|..++.. ++...... .-...+.++++|++.
T Consensus 73 ~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~---- 146 (246)
T PF08450_consen 73 TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGK---- 146 (246)
T ss_dssp EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSS----
T ss_pred EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcch----
Confidence 443332 346688999999995554433 2 557778877 55433333 345568899999832
Q ss_pred cccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCc---c---ccccccccEeEEEECCCC
Q 012799 299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK---T---RMTGHQQLVNHVYFSPDG 372 (456)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~---~~~~~~~~v~~~~~sp~~ 372 (456)
.++++-+..+.|..+++....... . .+....+..-.+++..+|
T Consensus 147 -------------------------------~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G 195 (246)
T PF08450_consen 147 -------------------------------TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG 195 (246)
T ss_dssp -------------------------------EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred -------------------------------heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC
Confidence 124567778889999976444311 1 112222347889999999
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799 373 QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408 (456)
Q Consensus 373 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 408 (456)
++.++....+.|.+++.. |+++..+......++++
T Consensus 196 ~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~ 230 (246)
T PF08450_consen 196 NLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNC 230 (246)
T ss_dssp -EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEE
T ss_pred CEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEE
Confidence 988888889999999976 99988888666678888
No 291
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=3.6e-07 Score=84.10 Aligned_cols=223 Identities=14% Similarity=0.113 Sum_probs=129.9
Q ss_pred CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCE-EEEEeCC---CeEEEEeCCCCCCccccccCcccceEEEEecccc
Q 012799 130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH-LVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205 (456)
Q Consensus 130 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 205 (456)
..|.+-|.+... ...+... +......|+|||+. ++..+.+ ..|.++|+.+++... +....+......|+|
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--lt~~~g~~~~~~~SP-- 242 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--IASSQGMLVVSDVSK-- 242 (419)
T ss_pred ceEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--EecCCCcEEeeEECC--
Confidence 356665655443 3333323 37889999999985 6654443 469999998887543 333455566778998
Q ss_pred cCCCCCEEEEEe-C--CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe-CCC--cEEEEECCCCeEEEEee
Q 012799 206 LNAPCRRFVSAS-K--DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS-QDC--TIKVWETTQGKLIRELK 278 (456)
Q Consensus 206 ~~~~~~~l~~~~-~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~dg--~i~iwd~~~~~~~~~~~ 278 (456)
||+.++... . +..|+++|+.+++.. .+..+........|+|+| .++..+ ..+ .|.+.|+.+++..+...
T Consensus 243 ---DG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 243 ---DGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred ---CCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc
Confidence 888776543 2 356888898777643 343333334456899999 444433 333 58888888776644332
Q ss_pred cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC---------CcEEEEecCCC
Q 012799 279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD---------FTMFLWEPAVS 349 (456)
Q Consensus 279 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~ 349 (456)
. ... ...|+|++ +.++..... ..|.+.|+..+
T Consensus 319 ~-g~~--~~~~SPDG------------------------------------~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g 359 (419)
T PRK04043 319 H-GKN--NSSVSTYK------------------------------------NYIVYSSRETNNEFGKNTFNLYLISTNSD 359 (419)
T ss_pred C-CCc--CceECCCC------------------------------------CEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence 1 111 24788874 334443332 36778886655
Q ss_pred CCCccccccccccEeEEEECCCCCEEEEEECCC---cEEEEeCCCCeEEEEEecccccE
Q 012799 350 KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK---SIKLWNGTTGKFVAVFRGHVGPV 405 (456)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v 405 (456)
.. ..+... .......|+|||+.|+..+.++ .+.+.++. |.....+....+.+
T Consensus 360 ~~--~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~~~~g~~ 414 (419)
T PRK04043 360 YI--RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN-YNKSFLFPLKVGKI 414 (419)
T ss_pred Ce--EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC-CCeeEEeecCCCcc
Confidence 32 222222 2233578999999877765432 36666764 43333344333333
No 292
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.07 E-value=1.3e-07 Score=96.74 Aligned_cols=245 Identities=14% Similarity=0.110 Sum_probs=143.8
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCCcccccc-C------------cccceEEEEecccccCCCCCEEEEEe-C
Q 012799 154 LCIAWSAD-GKHLVSGSKAGELQCWDPQTGKPSGNPLS-G------------HKKWITGISWEPVHLNAPCRRFVSAS-K 218 (456)
Q Consensus 154 ~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~------------~~~~v~~~~~~~~~~~~~~~~l~~~~-~ 218 (456)
..++++++ +.++++-+.++.|++||.... .....-. + .-.....+++.+ +++.|+++. .
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-----~gn~LYVaDt~ 644 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-----KKNLLYVADTE 644 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeC-----CCCEEEEEeCC
Confidence 46788874 556667677888999997643 2211111 0 112246677766 666665554 4
Q ss_pred CCcEEEEECCCCeEEEEecCc-----------------CccEEEEEeCC-CC-eEEEEeCCCcEEEEECCCCeEEEEeec
Q 012799 219 DGDARIWDVSLRKCVICLSGH-----------------TLAVTCVKWGG-DG-VIYTGSQDCTIKVWETTQGKLIRELKG 279 (456)
Q Consensus 219 dg~i~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~ 279 (456)
.+.|+.+|..++.. .++.+. -.....++++| ++ .+++.+.++.|++||..++... .+.+
T Consensus 645 n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G 722 (1057)
T PLN02919 645 NHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSG 722 (1057)
T ss_pred CceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEec
Confidence 56799999877653 222110 11235789998 45 5566667889999999876542 2221
Q ss_pred CC---------------cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCC-EEEEEeCCCcEEE
Q 012799 280 HG---------------HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE-RLVSGSDDFTMFL 343 (456)
Q Consensus 280 ~~---------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i 343 (456)
.. .....++++|+ ++ .+++.+.++.|++
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavspd------------------------------------G~~LYVADs~n~~Irv 766 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSPD------------------------------------LKELYIADSESSSIRA 766 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeCC------------------------------------CCEEEEEECCCCeEEE
Confidence 11 11223444443 44 4566677899999
Q ss_pred EecCCCCCCcc------------cccc--------ccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccc
Q 012799 344 WEPAVSKQPKT------------RMTG--------HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403 (456)
Q Consensus 344 wd~~~~~~~~~------------~~~~--------~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 403 (456)
||+.++..... .+.. .-.....++++++|+++++-+.+++|++||..++...... +...
T Consensus 767 ~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia-G~G~ 845 (1057)
T PLN02919 767 LDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA-GTGK 845 (1057)
T ss_pred EECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe-ccCC
Confidence 99765432110 0000 0113468899999999888889999999999877654322 2110
Q ss_pred cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 404 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.- | .... .....-.....++++++|+.+++-+.+++|++|
T Consensus 846 ~G----~--------~dG~-~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 846 AG----F--------KDGK-ALKAQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred cC----C--------CCCc-ccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 00 0 0000 000000112233889999999999999999986
No 293
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.06 E-value=1.6e-09 Score=99.46 Aligned_cols=251 Identities=16% Similarity=0.208 Sum_probs=162.8
Q ss_pred EEEEEECCCC--CeEEEEECCCcEEEEeCCC---CcceeEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCC
Q 012799 111 VLSVAFSPDG--RQLASGSGDTTVRLWDLNT---QTPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKP 184 (456)
Q Consensus 111 V~~~~~s~~~--~~l~~~~~d~~v~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~ 184 (456)
|-...|+|.. .+-++......-.+|++.. ......+.+|...|+.+.|+|+ ...+++++-|-.+..||+++...
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~ 149 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR 149 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence 5566777643 3444444444567888753 3345667899999999999985 46889999999999999988765
Q ss_pred ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC-eEEEEecCcCccEEEEEeCCC--CeEEEEeCCC
Q 012799 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGD--GVIYTGSQDC 261 (456)
Q Consensus 185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~dg 261 (456)
.......-......++|+- ....+++.+....|.+||.+.+ .++..+++|...|..++|..- +.+++++.||
T Consensus 150 p~ys~~~w~s~asqVkwny-----k~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~ 224 (1081)
T KOG0309|consen 150 PFYSTSSWRSAASQVKWNY-----KDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDG 224 (1081)
T ss_pred ceeeeecccccCceeeecc-----cCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCC
Confidence 4333444445567788876 3345566666788999999865 567788889999999998763 3899999999
Q ss_pred cEEEEECCCCeEEEE-eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCc
Q 012799 262 TIKVWETTQGKLIRE-LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (456)
Q Consensus 262 ~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 340 (456)
+|+.||......... ......+|..-.+-|-+.-..... ...++.+.--..+..
T Consensus 225 tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp-------------------------~~G~n~v~~~~c~n~ 279 (1081)
T KOG0309|consen 225 TVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMP-------------------------MVGGNMVPQLRCENS 279 (1081)
T ss_pred ceeeecccccccccceeccccCcceeccccccCceeEecc-------------------------ccCCeeeeeccccch
Confidence 999999875432211 111223333333333211000000 000111111222333
Q ss_pred EEEEecCCCCCCccccccccccEeEEEECCCC----------CEEEEEECCCcEEEEeCCC
Q 012799 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG----------QWVASASFDKSIKLWNGTT 391 (456)
Q Consensus 341 i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~----------~~l~s~~~dg~i~iwd~~~ 391 (456)
...|+..+...++..+.||...|....|-..+ -.|+|-+.|..+++|-+.+
T Consensus 280 d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 280 DLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred hhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 44566556667888899999988766554322 2499999999999998754
No 294
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=4.4e-08 Score=87.28 Aligned_cols=258 Identities=16% Similarity=0.166 Sum_probs=157.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC-----------CCc
Q 012799 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-----------DGD 221 (456)
Q Consensus 153 v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-----------dg~ 221 (456)
-+-+.|||.|.||++--..| |.+|--.+-.... ...| ..|.-+.|+| +.++|++-+. ...
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~--RF~H-p~Vq~idfSP-----~EkYLVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQ--RFYH-PGVQFIDFSP-----NEKYLVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHH--hccC-CCceeeecCC-----ccceEEEecCCccccCcccCCCce
Confidence 46789999999999987765 8899655444333 1223 3478889999 7889998653 257
Q ss_pred EEEEECCCCeEEEEecCcC--c-cEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeec
Q 012799 222 ARIWDVSLRKCVICLSGHT--L-AVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG 298 (456)
Q Consensus 222 i~iwd~~~~~~~~~~~~~~--~-~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 298 (456)
+.|||+.+|.....+.... . .-.-..|+.|+..++.-....|.||+..+-.++..-...-..|....|+|...+++.
T Consensus 284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred EEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence 9999999999887775422 2 223467898885555555577999998765444333334456788888888655443
Q ss_pred cccCCCCc--------cCChHHHHHHHHhh---hhhccCCCCCEEEEEe----------CCCcEEEEecCCCCCCccccc
Q 012799 299 AFDHTGKQ--------YSSPEEMKKAALER---YNKIKGNAPERLVSGS----------DDFTMFLWEPAVSKQPKTRMT 357 (456)
Q Consensus 299 ~~~~~~~~--------~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~ 357 (456)
........ ...........+.. ....+...+++|+.-- .-..+.|+.++....++...
T Consensus 364 wtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v- 442 (698)
T KOG2314|consen 364 WTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV- 442 (698)
T ss_pred EcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-
Confidence 32221111 00000111111111 1112445566666432 12245666666655555433
Q ss_pred cccccEeEEEECCCCCEEEEEEC---CCcEEEEeCCC-C---eEEEEEecccccEEEEEeeeeeeecCCCCceeeecccc
Q 012799 358 GHQQLVNHVYFSPDGQWVASASF---DKSIKLWNGTT-G---KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSC 430 (456)
Q Consensus 358 ~~~~~v~~~~~sp~~~~l~s~~~---dg~i~iwd~~~-~---~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~ 430 (456)
.-...|...+|-|.|+.+++-+. ..++.+|.+++ . +++..+.. ...+.+
T Consensus 443 elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~v---------------------- 498 (698)
T KOG2314|consen 443 ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTV---------------------- 498 (698)
T ss_pred ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceE----------------------
Confidence 34567889999999998776543 25788888773 2 22333332 234445
Q ss_pred cccceeEecCCCeEEEeeC
Q 012799 431 CMSLYSWSADSRLLLSGSK 449 (456)
Q Consensus 431 ~~~~~~~s~dg~~l~s~s~ 449 (456)
.|+|.|++++.+..
T Consensus 499 -----fwsPkG~fvvva~l 512 (698)
T KOG2314|consen 499 -----FWSPKGRFVVVAAL 512 (698)
T ss_pred -----EEcCCCcEEEEEEe
Confidence 89999999887753
No 295
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=9.3e-10 Score=97.66 Aligned_cols=212 Identities=19% Similarity=0.318 Sum_probs=146.3
Q ss_pred eeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC-C-----ccccccCcccceEEEEecccccCCCCCEEEEE
Q 012799 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK-P-----SGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216 (456)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 216 (456)
+..+.+|...|..++--.+.+.+++++.|.+|++|.++... . ....+..|+.+|.++.|.. +-+++ +
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-----~lr~i--~ 800 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-----DLRSI--A 800 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-----cccee--e
Confidence 34567899999988877788899999999999999987432 1 1235678999999999877 44444 5
Q ss_pred eCCCcEEEEECCCCeEEEEec-----CcCccEEEEEeCCCCeEEEE-eCCCcEEEEECCCCeEEEEee-----cCCcceE
Q 012799 217 SKDGDARIWDVSLRKCVICLS-----GHTLAVTCVKWGGDGVIYTG-SQDCTIKVWETTQGKLIRELK-----GHGHWVN 285 (456)
Q Consensus 217 ~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~-----~~~~~i~ 285 (456)
+.||.|.+||.-.++.+..+. +..+.|.|+.--....++++ +...+|+++|.+.++....++ +.+..+.
T Consensus 801 ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 801 SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 668999999987666654332 12233444432222244444 778999999999987666554 3445577
Q ss_pred EEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeE
Q 012799 286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365 (456)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 365 (456)
++++.+. ++.++++-.+|.|.+.|.+++.. +......+.....
T Consensus 881 ~iaVa~~------------------------------------GN~lAa~LSnGci~~LDaR~G~v-INswrpmecdllq 923 (1034)
T KOG4190|consen 881 AIAVADK------------------------------------GNKLAAALSNGCIAILDARNGKV-INSWRPMECDLLQ 923 (1034)
T ss_pred EEEeccC------------------------------------cchhhHHhcCCcEEEEecCCCce-eccCCcccchhhh
Confidence 7887776 66799999999999999777652 2223333333333
Q ss_pred EEECCCCCEEEEEECCCcEEE-EeCCCCeEEEEEe
Q 012799 366 VYFSPDGQWVASASFDKSIKL-WNGTTGKFVAVFR 399 (456)
Q Consensus 366 ~~~sp~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~ 399 (456)
++ .|..+.|+....|.++.+ |...+|....+.+
T Consensus 924 la-apsdq~L~~saldHslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 924 LA-APSDQALAQSALDHSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred hc-CchhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence 33 355667887778888888 8877776655544
No 296
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=3.4e-07 Score=84.25 Aligned_cols=171 Identities=12% Similarity=0.052 Sum_probs=109.3
Q ss_pred cEEEEEECCCCCe-EEEEEC---CCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEE-eCC--CeEEEEeCCCC
Q 012799 110 AVLSVAFSPDGRQ-LASGSG---DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-SKA--GELQCWDPQTG 182 (456)
Q Consensus 110 ~V~~~~~s~~~~~-l~~~~~---d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d--g~i~vwd~~~~ 182 (456)
.+....|+|||+. ++..+. +..|+++|+.+++..... ...+......|+|||+.++.. +.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 7789999999985 665443 346899999887654433 355667778999999877654 333 46888888777
Q ss_pred CCccccccCcccceEEEEecccccCCCCCEEEEEeCC-C--cEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe
Q 012799 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-G--DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS 258 (456)
Q Consensus 183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~ 258 (456)
+... +..+........|+| ||+.++..+.. + .|+++|+.+++....... ... ...|+|+| .++...
T Consensus 268 ~~~~--LT~~~~~d~~p~~SP-----DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~ 337 (419)
T PRK04043 268 TLTQ--ITNYPGIDVNGNFVE-----DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSS 337 (419)
T ss_pred cEEE--cccCCCccCccEECC-----CCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEE
Confidence 6432 333333334567888 89888777642 3 688888887765433321 111 24899999 454443
Q ss_pred CC---------CcEEEEECCCCeEEEEeecCCcceEEEEecCcc
Q 012799 259 QD---------CTIKVWETTQGKLIRELKGHGHWVNSLALSTEY 293 (456)
Q Consensus 259 ~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~ 293 (456)
.. ..|.+.|+.++.. +.+... .......|+|++
T Consensus 338 ~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG 379 (419)
T PRK04043 338 RETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDG 379 (419)
T ss_pred cCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCC
Confidence 32 3688889887764 333322 223356777773
No 297
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.01 E-value=6.5e-08 Score=78.33 Aligned_cols=200 Identities=16% Similarity=0.075 Sum_probs=131.9
Q ss_pred CCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCcCccEEEEEe
Q 012799 170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAVTCVKW 248 (456)
Q Consensus 170 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~ 248 (456)
....+-+|+..+..... ..--..+.|.|..+-....+|+.||..|...+|...+.+.... ...|...|+-+.-
T Consensus 50 ~t~sv~i~~~y~N~~~i------v~~y~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGI------VEFYTGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred ceeeeEeccccCCchhh------EEeeecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence 34457777776544111 1112567788877666778999999999999999986554332 2333333322221
Q ss_pred CCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccC
Q 012799 249 GGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326 (456)
Q Consensus 249 ~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (456)
..+. .+..++.|.++++.++.-+..........-.+.+++++++
T Consensus 124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd---------------------------------- 169 (344)
T KOG4532|consen 124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSND---------------------------------- 169 (344)
T ss_pred hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCC----------------------------------
Confidence 1122 6777889999999888755433333222233778888887
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCCccc--cccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEE-----EEe
Q 012799 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTR--MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA-----VFR 399 (456)
Q Consensus 327 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~ 399 (456)
+.++++.+....|..|.+.....-... .......=.+..|+.....+|++..||++.|||++...... +-.
T Consensus 170 --~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp 247 (344)
T KOG4532|consen 170 --PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRP 247 (344)
T ss_pred --CceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCC
Confidence 555888889999999987765543322 22333445677899988999999999999999998754322 234
Q ss_pred cccccEEEEEee
Q 012799 400 GHVGPVYQIRFE 411 (456)
Q Consensus 400 ~~~~~v~~i~~~ 411 (456)
.|.+.+..+.|.
T Consensus 248 ~hnGa~R~c~Fs 259 (344)
T KOG4532|consen 248 HHNGAFRVCRFS 259 (344)
T ss_pred CCCCceEEEEec
Confidence 688899998664
No 298
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.00 E-value=8.2e-09 Score=88.23 Aligned_cols=153 Identities=14% Similarity=0.224 Sum_probs=105.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeE----EEEec--CcCccEEEEEeCCCCeEE-EEeCCCcEEEEECCCCeEEEEeecCC
Q 012799 209 PCRRFVSASKDGDARIWDVSLRKC----VICLS--GHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHG 281 (456)
Q Consensus 209 ~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~--~~~~~v~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~ 281 (456)
++++++.+..+....+++...... ..... .....++.+..+....++ .++....+.+|....+ ....+-+|-
T Consensus 73 ~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~-~~~~~lGhv 151 (390)
T KOG3914|consen 73 SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG-RCEPILGHV 151 (390)
T ss_pred CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc-Ccchhhhhh
Confidence 777888888877777777654332 22221 112223333333222222 2333445666665553 334455688
Q ss_pred cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccc
Q 012799 282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361 (456)
Q Consensus 282 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 361 (456)
+.+..++++|+ +++++++..|..|++-.............||..
T Consensus 152 Sml~dVavS~D------------------------------------~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e 195 (390)
T KOG3914|consen 152 SMLLDVAVSPD------------------------------------DQFIITADRDEKIRVSRYPATFVIESFCLGHKE 195 (390)
T ss_pred hhhheeeecCC------------------------------------CCEEEEecCCceEEEEecCcccchhhhccccHh
Confidence 99999999998 677999999999999887666555566678999
Q ss_pred cEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEe
Q 012799 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR 399 (456)
Q Consensus 362 ~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 399 (456)
-|..++.-++ ..|++||.|+++++||+.+|+.+.++.
T Consensus 196 FVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 196 FVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred heeeeeeccC-ceeeecCCCCcEEEEecccCCcccccc
Confidence 9999999765 458999999999999999999886654
No 299
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.98 E-value=1.1e-09 Score=63.58 Aligned_cols=38 Identities=53% Similarity=0.995 Sum_probs=35.7
Q ss_pred cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEe
Q 012799 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136 (456)
Q Consensus 99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd 136 (456)
++.+++++|.+.|++++|+|++++|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45678999999999999999999999999999999997
No 300
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.95 E-value=3.8e-09 Score=84.90 Aligned_cols=163 Identities=13% Similarity=0.172 Sum_probs=104.5
Q ss_pred cccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce-eEEecCCCCEEEEEEcCCCCEEEEEeC-----CCeEEE
Q 012799 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-FKCTGHKNWVLCIAWSADGKHLVSGSK-----AGELQC 176 (456)
Q Consensus 103 ~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~-----dg~i~v 176 (456)
.+..|+++=.+-+.+-.++.++++..||.+.+++.+.-..+ ..+......-.+.+....++.+.++.. -+..+.
T Consensus 84 ~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a 163 (319)
T KOG4714|consen 84 VLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYA 163 (319)
T ss_pred eeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceee
Confidence 33445555444455556778999999999999997652111 111111111122223334555555432 234566
Q ss_pred EeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEE-EEecCcCccEEEEEeCCCC--e
Q 012799 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV-ICLSGHTLAVTCVKWGGDG--V 253 (456)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~--~ 253 (456)
|+++..+.... .......|.+++-+|. ....+++|+.||.+-+||.+..... ..++.|+.++..+.|+|.. .
T Consensus 164 ~~~~p~~t~~~-~~~~~~~v~~l~~hp~----qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 164 NTLDPIKTLIP-SKKALDAVTALCSHPA----QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred ecccccccccc-cccccccchhhhCCcc----cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 66654443221 1112234888888873 4457788899999999999887543 3457899999999999976 9
Q ss_pred EEEEeCCCcEEEEECCC
Q 012799 254 IYTGSQDCTIKVWETTQ 270 (456)
Q Consensus 254 l~~~~~dg~i~iwd~~~ 270 (456)
|++++.||.+..||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 99999999999999875
No 301
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.95 E-value=3.1e-06 Score=72.03 Aligned_cols=217 Identities=16% Similarity=0.187 Sum_probs=125.8
Q ss_pred EEEEECC-CCCeEEEEECCC-cEEEEeCCCCcceeEEecCCCCEE--EEEEcCCCCEEEEEeC-----CCeEEEEeCCCC
Q 012799 112 LSVAFSP-DGRQLASGSGDT-TVRLWDLNTQTPMFKCTGHKNWVL--CIAWSADGKHLVSGSK-----AGELQCWDPQTG 182 (456)
Q Consensus 112 ~~~~~s~-~~~~l~~~~~d~-~v~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~s~~~-----dg~i~vwd~~~~ 182 (456)
..++.+| .+..++.+-.-| ...+||..+++....+....+.-. .-.|++||++|++.-. .|.|-|||...+
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 3578888 455666666555 577899999988877654333221 3589999999998644 478999999833
Q ss_pred CCccccccCcccceEEEEecccccCCCCCEEEEEeC------------------CCcEEEEECCCCeEEEE--e--cCcC
Q 012799 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK------------------DGDARIWDVSLRKCVIC--L--SGHT 240 (456)
Q Consensus 183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~------------------dg~i~iwd~~~~~~~~~--~--~~~~ 240 (456)
-.....+..|.-.-..+.+.| ++..|+++-. +..+...|..+++.+.. + .-|.
T Consensus 88 ~~ri~E~~s~GIGPHel~l~p-----DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMP-----DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ 162 (305)
T ss_pred cEEEeEecCCCcChhhEEEcC-----CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc
Confidence 222223444444455677777 8877777632 12233334444444333 2 1234
Q ss_pred ccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhh
Q 012799 241 LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320 (456)
Q Consensus 241 ~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (456)
..|..+++.++|.++.+... .-....
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~------qg~~~~------------------------------------------------ 188 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQY------QGDPGD------------------------------------------------ 188 (305)
T ss_pred cceeeEEecCCCcEEEEEec------CCCCCc------------------------------------------------
Confidence 44555555555433333221 000000
Q ss_pred hhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEE-EECCCcEEEEeCCCCeEEEEEe
Q 012799 321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS-ASFDKSIKLWNGTTGKFVAVFR 399 (456)
Q Consensus 321 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~ 399 (456)
....++.-..++.+...+... .....-...+-+|++++++.++++ +-.-|.+.+||..+++++....
T Consensus 189 -------~~PLva~~~~g~~~~~~~~p~-----~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 189 -------APPLVALHRRGGALRLLPAPE-----EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred -------cCCeEEEEcCCCcceeccCCh-----HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc
Confidence 011233333333344444221 112334567899999999988755 4466799999999999887665
No 302
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.95 E-value=2e-08 Score=94.64 Aligned_cols=183 Identities=14% Similarity=0.160 Sum_probs=135.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcC
Q 012799 161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT 240 (456)
Q Consensus 161 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 240 (456)
++..++.|+....+..+|+++.+... ...-....|.-++. +++.+.+|...|+|.+-|.++.+.+.++..|.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r-~~~v~a~~v~imR~-------Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs 217 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETR-TTNVSASGVTIMRY-------NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS 217 (1118)
T ss_pred CCcceeecchhhheeeeecccceeee-eeeccCCceEEEEe-------cCcEEEeecccceEEeecCCcCceeeeeeccc
Confidence 45567778877888899998877654 22222233666655 66899999999999999999999999999999
Q ss_pred ccEEEEEeCCCCeEEEEeCC---------CcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChH
Q 012799 241 LAVTCVKWGGDGVIYTGSQD---------CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE 311 (456)
Q Consensus 241 ~~v~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (456)
+.|.++....+ .|++++.. .-|++||+|+.+.+.-+.-+.++ .-+.|.|..
T Consensus 218 ~siSDfDv~GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl------------------ 277 (1118)
T KOG1275|consen 218 GSISDFDVQGN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSL------------------ 277 (1118)
T ss_pred cceeeeeccCC-eEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccc------------------
Confidence 99998887754 77776653 45789999988776655544333 334444442
Q ss_pred HHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC---ccccccccccEeEEEECCCCCEEEEEECCCcEEEEe
Q 012799 312 EMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP---KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388 (456)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd 388 (456)
...+++++..|...+-|...-..+ ..........+..+++|++|+.+|.|..+|.|.+|.
T Consensus 278 -----------------~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 278 -----------------TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred -----------------cceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 456889999999999994333222 233334445699999999999999999999999997
No 303
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.93 E-value=9.5e-07 Score=81.64 Aligned_cols=231 Identities=11% Similarity=0.038 Sum_probs=142.6
Q ss_pred CCeEEEEECCCcEEEEeCCCCcceeEEecCCC-CE-E-----EEEEcC--CCCEEEEEeCCCeEEEEeCCCCCCcccccc
Q 012799 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN-WV-L-----CIAWSA--DGKHLVSGSKAGELQCWDPQTGKPSGNPLS 190 (456)
Q Consensus 120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~-~v-~-----~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 190 (456)
+..+++++.++.+.-+|..+|+.+........ .. . .+.-.| ++..++.++.+|.+..+|.++|+...+...
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence 55677777889999999999988876542220 00 0 000111 455777888899999999999997663322
Q ss_pred CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccE-----EEEEeCCCCeEEEEeCCCcEEE
Q 012799 191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV-----TCVKWGGDGVIYTGSQDCTIKV 265 (456)
Q Consensus 191 ~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~l~~~~~dg~i~i 265 (456)
. ..+. -.|.. .+..++.++.++.+..+|..+++.+.........+ ..-... ++.++.++.+|.+..
T Consensus 149 ~--~~~~---ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~v~~~~~~g~v~a 219 (394)
T PRK11138 149 A--GEAL---SRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FGGAIVGGDNGRVSA 219 (394)
T ss_pred C--Ccee---cCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CCEEEEEcCCCEEEE
Confidence 1 1221 11211 33567778889999999999999887775321111 011111 346777888999999
Q ss_pred EECCCCeEEEEeecCCc----c---eEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC
Q 012799 266 WETTQGKLIRELKGHGH----W---VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (456)
Q Consensus 266 wd~~~~~~~~~~~~~~~----~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 338 (456)
+|..+|+.+........ . ...+..+|- ..+..++.++.+
T Consensus 220 ~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~----------------------------------v~~~~vy~~~~~ 265 (394)
T PRK11138 220 VLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV----------------------------------VVGGVVYALAYN 265 (394)
T ss_pred EEccCChhhheeccccCCCccchhcccccCCCcE----------------------------------EECCEEEEEEcC
Confidence 99999887655431110 0 000000110 014557778889
Q ss_pred CcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEE
Q 012799 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF 398 (456)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 398 (456)
|.+..+|..+++.......+. ...+.. .+..|+.++.+|.+..+|..+|+.+...
T Consensus 266 g~l~ald~~tG~~~W~~~~~~---~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 266 GNLVALDLRSGQIVWKREYGS---VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQ 320 (394)
T ss_pred CeEEEEECCCCCEEEeecCCC---ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence 999999987765443322111 112222 4567788889999999999999876543
No 304
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.90 E-value=3e-07 Score=78.80 Aligned_cols=209 Identities=21% Similarity=0.184 Sum_probs=126.8
Q ss_pred CCeEEEEeCCCCCCccccccCc-ccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeC
Q 012799 171 AGELQCWDPQTGKPSGNPLSGH-KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG 249 (456)
Q Consensus 171 dg~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 249 (456)
+|.|..||..+|+.+....... ........ .+ ++..+++++.++.+..||..+++.+..+.... .+......
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~-~~-----~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~~~ 74 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATA-VP-----DGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAPVV 74 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETE-EE-----ETTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceE-EE-----eCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-cccceeee
Confidence 6789999998888765332211 11111101 11 45678888999999999999999888776422 11111123
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeEEEEe-ecCCcce-----EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhh
Q 012799 250 GDGVIYTGSQDCTIKVWETTQGKLIREL-KGHGHWV-----NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK 323 (456)
Q Consensus 250 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (456)
.++.+++++.++.++.+|..+|+.+... ....... ....+.
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--------------------------------- 121 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--------------------------------- 121 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE---------------------------------
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEe---------------------------------
Confidence 3457788888899999999999998874 3221111 111111
Q ss_pred ccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccc----------cEeEEEECCCCCEEEEEECCCcEEEEeCCCCe
Q 012799 324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ----------LVNHVYFSPDGQWVASASFDKSIKLWNGTTGK 393 (456)
Q Consensus 324 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~ 393 (456)
++.++.+..++.|..+|+.+++....... ... .+..-....++ .++.++.+|.+.-+|+.+++
T Consensus 122 -----~~~~~~~~~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~ 194 (238)
T PF13360_consen 122 -----GDRLYVGTSSGKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE 194 (238)
T ss_dssp -----TTEEEEEETCSEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE
T ss_pred -----cCEEEEEeccCcEEEEecCCCcEEEEeec-CCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC
Confidence 45588888899999999877764333221 111 11222222345 67777777754444999999
Q ss_pred EEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 394 FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 394 ~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.+.... ...+.. ....++..|+.++.|+.|..|
T Consensus 195 ~~w~~~--~~~~~~----------------------------~~~~~~~~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 195 KLWSKP--ISGIYS----------------------------LPSVDGGTLYVTSSDGRLYAL 227 (238)
T ss_dssp EEEEEC--SS-ECE----------------------------CEECCCTEEEEEETTTEEEEE
T ss_pred EEEEec--CCCccC----------------------------CceeeCCEEEEEeCCCEEEEE
Confidence 765333 222222 136777888888888888764
No 305
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=1.1e-07 Score=88.66 Aligned_cols=161 Identities=20% Similarity=0.255 Sum_probs=119.0
Q ss_pred cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc
Q 012799 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 187 (456)
.+.++|++++ +++|+-|+.+|.|++++.... + .+...|+.. ..+|.++++|+.||+|.|-.+-+.+...
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~- 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT- 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce-
Confidence 5677888886 678999999999999997643 3 333345443 5589999999999999999988777653
Q ss_pred cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC---CCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEE
Q 012799 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS---LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIK 264 (456)
Q Consensus 188 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~ 264 (456)
......++.+++++|.-.....+.+++||..| +.++.-+ ....+ .+....++|.++.|..+ .++-++.+| |+
T Consensus 108 -~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g~-lIAWand~G-v~ 182 (846)
T KOG2066|consen 108 -QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRGN-LIAWANDDG-VK 182 (846)
T ss_pred -eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEecCc-EEEEecCCC-cE
Confidence 34456789999999964444567899999988 7776532 11112 34556789999999865 666666666 99
Q ss_pred EEECCCCeEEEEeecCCcce
Q 012799 265 VWETTQGKLIRELKGHGHWV 284 (456)
Q Consensus 265 iwd~~~~~~~~~~~~~~~~i 284 (456)
+||+.+++.+..++.....+
T Consensus 183 vyd~~~~~~l~~i~~p~~~~ 202 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSV 202 (846)
T ss_pred EEeccccceeeccCCCCCCC
Confidence 99999998888776544433
No 306
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=9.8e-09 Score=85.95 Aligned_cols=134 Identities=13% Similarity=0.210 Sum_probs=107.5
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCC-----cceeEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEE
Q 012799 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQ 175 (456)
Q Consensus 102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~ 175 (456)
+.|. ....|.++.|...++++..|+.+|.|...|++.. .+...+ -|...|+++..-. ++.+|.+.+.+|+|+
T Consensus 247 qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkik 324 (425)
T KOG2695|consen 247 QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIK 324 (425)
T ss_pred cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCcee
Confidence 3443 5678999999999999999999999999999764 333444 4999999998877 788999999999999
Q ss_pred EEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC
Q 012799 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG 238 (456)
Q Consensus 176 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 238 (456)
+||++--+... ......+.|...++.|.+..+....+++++.|...+||.++.+..+.++..
T Consensus 325 LyD~R~~K~~~-~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 325 LYDLRATKCKK-SVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred Eeeehhhhccc-ceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 99998655422 233334456677777877777888999999999999999999998888754
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.85 E-value=1e-05 Score=69.49 Aligned_cols=216 Identities=18% Similarity=0.219 Sum_probs=133.5
Q ss_pred EEEECC-CCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCCCccccc-
Q 012799 113 SVAFSP-DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQTGKPSGNPL- 189 (456)
Q Consensus 113 ~~~~s~-~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~- 189 (456)
++.|.+ ++.++++--..+.|..|+..+++... +.... ...+++. +++ .|+.+...+ +.++|..+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 578888 67777776678999999998765433 22222 7777887 565 555555554 5556988875432111
Q ss_pred --cC-cccceEEEEecccccCCCCCEEEEEeCC--------CcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEE-E
Q 012799 190 --SG-HKKWITGISWEPVHLNAPCRRFVSASKD--------GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIY-T 256 (456)
Q Consensus 190 --~~-~~~~v~~~~~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~ 256 (456)
.. .......+++.| +|+..++.... |.|..++.. ++..... ..-.....++|+|++ .|+ +
T Consensus 79 ~~~~~~~~~~ND~~vd~-----~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ 151 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDP-----DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVA 151 (246)
T ss_dssp ETTCSCTEEEEEEEE-T-----TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEE
T ss_pred cCCCcccCCCceEEEcC-----CCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeec
Confidence 11 345677888888 88877765543 557777777 5543333 234567899999999 454 5
Q ss_pred EeCCCcEEEEECCCCe--E-----EEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCC
Q 012799 257 GSQDCTIKVWETTQGK--L-----IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (456)
Q Consensus 257 ~~~dg~i~iwd~~~~~--~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (456)
-+..+.|..|++.... . ...+.........+++..+ +
T Consensus 152 ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~------------------------------------G 195 (246)
T PF08450_consen 152 DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD------------------------------------G 195 (246)
T ss_dssp ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT------------------------------------S
T ss_pred ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC------------------------------------C
Confidence 5677889999885321 1 1122222223566777766 5
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEE-CCCCCEEEEE
Q 012799 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF-SPDGQWVASA 378 (456)
Q Consensus 330 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-sp~~~~l~s~ 378 (456)
+..++....+.|.++|.. ++ ....+.-....+++++| -++.+.|+..
T Consensus 196 ~l~va~~~~~~I~~~~p~-G~-~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 196 NLWVADWGGGRIVVFDPD-GK-LLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp -EEEEEETTTEEEEEETT-SC-EEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred CEEEEEcCCCEEEEECCC-cc-EEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 557777788999999965 33 33333333457899999 4665555443
No 308
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.82 E-value=1.5e-08 Score=58.74 Aligned_cols=38 Identities=39% Similarity=0.743 Sum_probs=36.1
Q ss_pred cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 012799 141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (456)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 178 (456)
+++.++.+|...|++++|+|++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
No 309
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=1.4e-08 Score=85.01 Aligned_cols=152 Identities=17% Similarity=0.290 Sum_probs=114.0
Q ss_pred EEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC---ccccccCcccceEEEE
Q 012799 124 ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP---SGNPLSGHKKWITGIS 200 (456)
Q Consensus 124 ~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~~v~~~~ 200 (456)
++.+.+-.|-+-|++++... .+. ..+.|.++.|...++++..|.++|.|..+|++.+.. -.....-|...|+++.
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq 305 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQ 305 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhh
Confidence 34445667888888876432 232 567799999998899999999999999999986521 1223445778888876
Q ss_pred ecccccCCCCCEEEEEeCCCcEEEEECCCCeE---EEEecCcCccEEEEE--eCC-CCeEEEEeCCCcEEEEECCCCeEE
Q 012799 201 WEPVHLNAPCRRFVSASKDGDARIWDVSLRKC---VICLSGHTLAVTCVK--WGG-DGVIYTGSQDCTIKVWETTQGKLI 274 (456)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~--~~~-~~~l~~~~~dg~i~iwd~~~~~~~ 274 (456)
.... ++++|++.+.+|+|++||.+.-++ +..+.+|-..-.-+- +.+ +|.+++++.|...+||.++.+..+
T Consensus 306 ~Lq~----s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 306 ILQF----SQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL 381 (425)
T ss_pred hhcc----ccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCcee
Confidence 5442 568999999999999999987777 888888865433333 334 348889999999999999999999
Q ss_pred EEeecCC
Q 012799 275 RELKGHG 281 (456)
Q Consensus 275 ~~~~~~~ 281 (456)
.+++...
T Consensus 382 ~tipf~~ 388 (425)
T KOG2695|consen 382 CTIPFPY 388 (425)
T ss_pred eccCCCC
Confidence 8886543
No 310
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.4e-07 Score=82.04 Aligned_cols=243 Identities=17% Similarity=0.173 Sum_probs=159.5
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEEC-CCcEEEEeCCCCcceeEEe--cCCCCEEEEEEcCC-CC-EEEEE-eCCCeE
Q 012799 101 SATIAGHTEAVLSVAFSPDGRQLASGSG-DTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSAD-GK-HLVSG-SKAGEL 174 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~-d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~-~~-~l~s~-~~dg~i 174 (456)
+..+..|...|.+++.+.+|.++.+.+. |..++++|+++-..+..+. .-.+.+..+ .++. -. .|+.+ -.+|.+
T Consensus 46 VKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i 124 (558)
T KOG0882|consen 46 VKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKI 124 (558)
T ss_pred hhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCc
Confidence 4567889999999999999999999877 9999999998755442222 122222221 1221 11 33333 357889
Q ss_pred EEEeCCCCC-CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC------CeE---------EEEecC
Q 012799 175 QCWDPQTGK-PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL------RKC---------VICLSG 238 (456)
Q Consensus 175 ~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~---------~~~~~~ 238 (456)
.++|-.... +......-|..+|..+.+.+ .+..+++....|.|.-|.... .+. +..+..
T Consensus 125 ~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-----a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K 199 (558)
T KOG0882|consen 125 FVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-----AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPK 199 (558)
T ss_pred EEECCcCCcCccceecccccCceEEEEeec-----cccceeeccccceeEeecCCCcccCccccccccccccchhhcccc
Confidence 999977554 33334566889999999998 778899999999999998763 111 112223
Q ss_pred cCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHH
Q 012799 239 HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA 317 (456)
Q Consensus 239 ~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (456)
.....+++.++|++ .+.+-+.|..|++++.++|+.++.+......-....-++
T Consensus 200 ~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~-------------------------- 253 (558)
T KOG0882|consen 200 AKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSP-------------------------- 253 (558)
T ss_pred cccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccc--------------------------
Confidence 45668899999999 888888999999999999998887753221111110000
Q ss_pred HhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC--CCccccccccc-cEeEEEECCCCCEEEEEECCCcEEEEeCCCCeE
Q 012799 318 LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK--QPKTRMTGHQQ-LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF 394 (456)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~-~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~ 394 (456)
+.+-++.-+. ...+.+..|.. .-+.++|...|++|+.|+-=| |++.++.+++.
T Consensus 254 -----------------------y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v 309 (558)
T KOG0882|consen 254 -----------------------YGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTV 309 (558)
T ss_pred -----------------------cccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeE
Confidence 0000000000 01111222332 345678999999999998777 89999999888
Q ss_pred EEEEe
Q 012799 395 VAVFR 399 (456)
Q Consensus 395 ~~~~~ 399 (456)
.+.+-
T Consensus 310 ~ri~g 314 (558)
T KOG0882|consen 310 VRILG 314 (558)
T ss_pred EEEec
Confidence 77664
No 311
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=1.2e-06 Score=82.01 Aligned_cols=142 Identities=23% Similarity=0.312 Sum_probs=106.6
Q ss_pred CCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCC-----CCEEEEEeCCCeEEEEeCCC-CCCccccccC
Q 012799 118 PDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD-----GKHLVSGSKAGELQCWDPQT-GKPSGNPLSG 191 (456)
Q Consensus 118 ~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~ 191 (456)
.+|.++++|+.||+|.|-.+.+.+...++. ...++.+++++|+ .+.+++||..| +.++.-+= |......+..
T Consensus 81 ~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~ 158 (846)
T KOG2066|consen 81 LEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE 158 (846)
T ss_pred cCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec
Confidence 359999999999999999998888777665 5678999999997 67899999988 77775331 1111113566
Q ss_pred cccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCcc------EEEEEeCCCCeEEEEeCCCcEEE
Q 012799 192 HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA------VTCVKWGGDGVIYTGSQDCTIKV 265 (456)
Q Consensus 192 ~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------v~~~~~~~~~~l~~~~~dg~i~i 265 (456)
..++|.++.| .|+++|-++.+| |++||..+++.+..+...... -..+.|.++..|+.|=. .+|++
T Consensus 159 ~eG~I~~i~W-------~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~-d~v~i 229 (846)
T KOG2066|consen 159 GEGPIHSIKW-------RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWG-DSVKI 229 (846)
T ss_pred CccceEEEEe-------cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecC-CeEEE
Confidence 6789999999 567888888777 999999999888777544333 34577877766666544 46888
Q ss_pred EECCC
Q 012799 266 WETTQ 270 (456)
Q Consensus 266 wd~~~ 270 (456)
..++.
T Consensus 230 ~~I~~ 234 (846)
T KOG2066|consen 230 CSIKK 234 (846)
T ss_pred EEEec
Confidence 88773
No 312
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.74 E-value=3.3e-05 Score=63.95 Aligned_cols=132 Identities=14% Similarity=0.171 Sum_probs=79.8
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCCC----ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe
Q 012799 156 IAWSADGKHLVSGSKAGELQCWDPQTGKP----SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK 231 (456)
Q Consensus 156 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 231 (456)
++.+.+|+.||.. .|..|.|=..+..-. ...........-..++|+| |+..||.+...|+|+++|+....
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-----D~tlLa~a~S~G~i~vfdl~g~~ 76 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-----DCTLLAYAESTGTIRVFDLMGSE 76 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-----CCcEEEEEcCCCeEEEEecccce
Confidence 4566788877765 355666554443211 1112222333456789998 99999999999999999987533
Q ss_pred EEEEecC-------cCccEEEEEeCCCC-------eEEEEeCCCcEEEEECCCC-----eEEEEee---cCCcceEEEEe
Q 012799 232 CVICLSG-------HTLAVTCVKWGGDG-------VIYTGSQDCTIKVWETTQG-----KLIRELK---GHGHWVNSLAL 289 (456)
Q Consensus 232 ~~~~~~~-------~~~~v~~~~~~~~~-------~l~~~~~dg~i~iwd~~~~-----~~~~~~~---~~~~~i~~~~~ 289 (456)
+..+.. -...|..+.|.+.. .|++-..+|.++-|-+..+ +...++. .....|.++.+
T Consensus 77 -lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy 155 (282)
T PF15492_consen 77 -LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVY 155 (282)
T ss_pred -eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEE
Confidence 333321 12456666664321 6777788888877765322 2223332 23557888888
Q ss_pred cCcce
Q 012799 290 STEYA 294 (456)
Q Consensus 290 ~~~~~ 294 (456)
+|...
T Consensus 156 ~p~h~ 160 (282)
T PF15492_consen 156 HPKHR 160 (282)
T ss_pred cCCCC
Confidence 88743
No 313
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.70 E-value=1.6e-08 Score=95.06 Aligned_cols=166 Identities=15% Similarity=0.215 Sum_probs=123.5
Q ss_pred cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCC--eEEE
Q 012799 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG--ELQC 176 (456)
Q Consensus 99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~i~v 176 (456)
+..++++.|+...+|++|+-+.++|+.|+..|.|+++++.+|.......+|...|+-+.-+.+|..+++.+.-. ...+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999888765433 4788
Q ss_pred EeCCCCCCccccccCcc-cceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec----CcCccEEEEEeCCC
Q 012799 177 WDPQTGKPSGNPLSGHK-KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS----GHTLAVTCVKWGGD 251 (456)
Q Consensus 177 wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~ 251 (456)
|++.+-... .|. ..-.++.|+. ....-+.|.......+||+.++.++.++. +.+..-++..|+|.
T Consensus 1172 W~~~s~~~~-----~Hsf~ed~~vkFsn-----~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1172 WDASSTGGP-----RHSFDEDKAVKFSN-----SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC 1241 (1516)
T ss_pred hccccccCc-----cccccccceeehhh-----hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCC
Confidence 998752211 121 2345667765 22334556666779999999988766532 12223367889998
Q ss_pred CeEEEEeCCCcEEEEECCCCeEEEEee
Q 012799 252 GVIYTGSQDCTIKVWETTQGKLIRELK 278 (456)
Q Consensus 252 ~~l~~~~~dg~i~iwd~~~~~~~~~~~ 278 (456)
..|+. .||. +||++..+.++.|.
T Consensus 1242 D~LIl--ndGv--LWDvR~~~aIh~FD 1264 (1516)
T KOG1832|consen 1242 DTLIL--NDGV--LWDVRIPEAIHRFD 1264 (1516)
T ss_pred cceEe--eCce--eeeeccHHHHhhhh
Confidence 74443 4553 69999877666664
No 314
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=3.1e-06 Score=72.87 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=84.4
Q ss_pred CcccEEEEEECCCCCeEEEEEC-----------------CCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCC-EEEEE
Q 012799 107 HTEAVLSVAFSPDGRQLASGSG-----------------DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK-HLVSG 168 (456)
Q Consensus 107 h~~~V~~~~~s~~~~~l~~~~~-----------------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~ 168 (456)
|...-.++.+++..++++.+.. =| +++.+..+.+....+.++...|..++|+|..+ ++..+
T Consensus 134 h~qk~f~v~r~~gcrli~y~~~~s~lv~sQks~qa~lpGvG-v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~a 212 (463)
T KOG1645|consen 134 HKQKSFSVGRNAGCRLIGYDESSSTLVVSQKSGQALLPGVG-VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLA 212 (463)
T ss_pred hcccceeeeecCCceEEecccccceeeeeccchhhcCCccc-eEEeccCCcchhhcccccchhhhhhccCccccceeeee
Confidence 6666666666665444332211 12 45555444455555667888999999999766 78889
Q ss_pred eCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe
Q 012799 169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK 231 (456)
Q Consensus 169 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 231 (456)
+.+.+|+|.|+++...+. ....+ ..+++++|.-. +..++.+|...|.|.+||++..+
T Consensus 213 sl~nkiki~dlet~~~vs-sy~a~-~~~wSC~wDld----e~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 213 SLGNKIKIMDLETSCVVS-SYIAY-NQIWSCCWDLD----ERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ccCceEEEEecccceeee-heecc-CCceeeeeccC----CcceeEEeccCceEEEEEccCCC
Confidence 999999999999887665 34444 78999999873 34677888889999999998654
No 315
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.64 E-value=2.8e-05 Score=73.79 Aligned_cols=246 Identities=15% Similarity=0.130 Sum_probs=139.2
Q ss_pred CCeEEEEECCCcEEEEeCCCCcceeEEecCCC------CEE--EEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccC
Q 012799 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN------WVL--CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSG 191 (456)
Q Consensus 120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 191 (456)
+..++.++.++.+.-.|..+++.+........ .+. .++.. ++..++.++.+|.|.-+|.++|+.+.+....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 34566677789999999999988877653322 010 11111 2267888889999999999999876532221
Q ss_pred ccc-ceEEEEecccccCCCCCEEEEEe---------CCCcEEEEECCCCeEEEEecCcCc--------------------
Q 012799 192 HKK-WITGISWEPVHLNAPCRRFVSAS---------KDGDARIWDVSLRKCVICLSGHTL-------------------- 241 (456)
Q Consensus 192 ~~~-~v~~~~~~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~-------------------- 241 (456)
... .-..+.-.|.- .+..++.++ .+|.+..+|..+++.+..+.....
T Consensus 140 ~~~~~~~~i~ssP~v---~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (488)
T cd00216 140 DQVPPGYTMTGAPTI---VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG 216 (488)
T ss_pred CCcCcceEecCCCEE---ECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence 110 00112222211 224555554 367899999999998877643211
Q ss_pred cE-EEEEeCCC-CeEEEEeCCC------------------cEEEEECCCCeEEEEeecCCcceEE--EEecCcceeeecc
Q 012799 242 AV-TCVKWGGD-GVIYTGSQDC------------------TIKVWETTQGKLIRELKGHGHWVNS--LALSTEYALRTGA 299 (456)
Q Consensus 242 ~v-~~~~~~~~-~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~ 299 (456)
.+ ...++++. +.++.++.++ .|.-+|..+|+.+..++........ ....|. +....
T Consensus 217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~--~~~~~ 294 (488)
T cd00216 217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPS--LADIK 294 (488)
T ss_pred CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCe--EEecc
Confidence 01 12344433 4777787665 6999999999988876532221111 000000 00000
Q ss_pred ccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEE-
Q 012799 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA- 378 (456)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~- 378 (456)
...+.....++.++.+|.++..|..+++........ ...++.+| ..++.+
T Consensus 295 -----------------------~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~vyv~~ 345 (488)
T cd00216 295 -----------------------PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GLVYLGA 345 (488)
T ss_pred -----------------------ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--ceEEEcc
Confidence 000000125788889999999998877654432211 11233444 233332
Q ss_pred -----------------ECCCcEEEEeCCCCeEEEEEec
Q 012799 379 -----------------SFDKSIKLWNGTTGKFVAVFRG 400 (456)
Q Consensus 379 -----------------~~dg~i~iwd~~~~~~~~~~~~ 400 (456)
..+|.+.-.|..+|+.+.....
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~ 384 (488)
T cd00216 346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKRE 384 (488)
T ss_pred ccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeC
Confidence 2467888899999988776653
No 316
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=3.2e-06 Score=79.66 Aligned_cols=109 Identities=17% Similarity=0.309 Sum_probs=87.1
Q ss_pred EEEEECCCCCeEEEEE----CCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc
Q 012799 112 LSVAFSPDGRQLASGS----GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187 (456)
Q Consensus 112 ~~~~~s~~~~~l~~~~----~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 187 (456)
+-.+|+|...++|.++ ..|.|.||- ++|++-.... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+.- .
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h-t 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH-T 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceee-e
Confidence 3467999999998886 457898885 5566543322 2334677999999989999999999999998776543 3
Q ss_pred cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC
Q 012799 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228 (456)
Q Consensus 188 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 228 (456)
....|..+|..+.|++ +|..++++..-|.+.+|...
T Consensus 96 v~~th~a~i~~l~wS~-----~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSH-----DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCCCCCceeEEecC-----CCCeEEEcCCCceeEEEEee
Confidence 5678999999999999 99999999999999999765
No 317
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=1.4e-05 Score=75.63 Aligned_cols=174 Identities=12% Similarity=0.107 Sum_probs=115.5
Q ss_pred cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCC-EEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCC
Q 012799 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW-VLCIAWSADGKHLVSGSKAG-----ELQCWDPQTGK 183 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~ 183 (456)
.|+| |++.+..+|.|+.+|.|.+.+- ..+.+..++.+... |..+....+..+|++.+.|+ .+++|+++.-+
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4544 6778889999999999888873 23444667777766 45444444557888877765 49999987542
Q ss_pred C----ccc---ccc-----CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC----CCeEEEEecCcCccEEEEE
Q 012799 184 P----SGN---PLS-----GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS----LRKCVICLSGHTLAVTCVK 247 (456)
Q Consensus 184 ~----~~~---~~~-----~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~ 247 (456)
. ... ... ....++..++.+. +-..+|+|-.+|.|..+.-. .+....-......+|+.++
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-----~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~ 178 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-----DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLA 178 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEc-----cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeE
Confidence 1 110 011 1244566677666 66889999999999988432 1222222234568999999
Q ss_pred eCCCC--eEEEEeCCCcEEEEECCCCeE-EEEeecCCcceEEEEecCc
Q 012799 248 WGGDG--VIYTGSQDCTIKVWETTQGKL-IRELKGHGHWVNSLALSTE 292 (456)
Q Consensus 248 ~~~~~--~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~ 292 (456)
+..++ .+++++. ..|.+|.+....+ ...+..++...+|.++++.
T Consensus 179 ~~~d~~s~lFv~Tt-~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~ 225 (933)
T KOG2114|consen 179 LRSDGKSVLFVATT-EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDG 225 (933)
T ss_pred EecCCceeEEEEec-ceeEEEEecCCCcceeeeccCCccceeeecCCC
Confidence 99888 3444444 5699999885442 4457778888888888875
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.62 E-value=1.2e-06 Score=83.12 Aligned_cols=179 Identities=13% Similarity=0.190 Sum_probs=136.1
Q ss_pred CCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEE
Q 012799 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI 199 (456)
Q Consensus 120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 199 (456)
+..++.|+....+..+|+.+.+......-....|+-+.. +++++.+|...|+|.+-|.++.+.+. .+..|.+.|.++
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~ih-t~~aHs~siSDf 223 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIH-TFDAHSGSISDF 223 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceee-eeeccccceeee
Confidence 446777777778888999888777666545545666664 78899999999999999999988876 688899999887
Q ss_pred EecccccCCCCCEEEEEeC---------CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEE-
Q 012799 200 SWEPVHLNAPCRRFVSASK---------DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWE- 267 (456)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd- 267 (456)
.. .|+.|+++|. |..|++||++..+.+.-+.-+.++ .-+.|.|.- .+++++..|...+-|
T Consensus 224 Dv-------~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~ 295 (1118)
T KOG1275|consen 224 DV-------QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDT 295 (1118)
T ss_pred ec-------cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccc
Confidence 65 6788998875 556899999988776655544443 446677754 889999999999999
Q ss_pred --CCCC-eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEE
Q 012799 268 --TTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW 344 (456)
Q Consensus 268 --~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 344 (456)
+.+. ..+..+...+..+..+.++++ ++.++.|..+|.|.+|
T Consensus 296 ~~lsNP~~~~~~v~p~~s~i~~fDiSsn------------------------------------~~alafgd~~g~v~~w 339 (1118)
T KOG1275|consen 296 ATLSNPPAGVKMVNPNGSGISAFDISSN------------------------------------GDALAFGDHEGHVNLW 339 (1118)
T ss_pred cccCCCccceeEEccCCCcceeEEecCC------------------------------------CceEEEecccCcEeee
Confidence 4433 223334444555888888877 6679999999999999
Q ss_pred e
Q 012799 345 E 345 (456)
Q Consensus 345 d 345 (456)
.
T Consensus 340 a 340 (1118)
T KOG1275|consen 340 A 340 (1118)
T ss_pred c
Confidence 7
No 319
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.62 E-value=0.00011 Score=59.90 Aligned_cols=143 Identities=16% Similarity=0.093 Sum_probs=98.0
Q ss_pred CCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEE
Q 012799 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI 199 (456)
Q Consensus 120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 199 (456)
..+++.|+..+.+.--|..+|+....-. -...+.+-+.- -|++++.|...|.+.+.+.++|...........-.+. .
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~-a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR-A 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc-e
Confidence 4577888888889999998888765432 23334333332 5678999999999999999999765432221111111 1
Q ss_pred EecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC-CCeEEEEeCCCcEEEEECCC
Q 012799 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQDCTIKVWETTQ 270 (456)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~dg~i~iwd~~~ 270 (456)
...+ ++..+..|+.|++.+..|.++..++...+...+...+-+..+ ++.|+++...|.+.--....
T Consensus 100 ~~d~-----~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 100 QCDF-----DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred EEcC-----CCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCC
Confidence 1222 778999999999999999999999988765555444555555 55777777777766555444
No 320
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=3.2e-07 Score=79.82 Aligned_cols=208 Identities=16% Similarity=0.100 Sum_probs=143.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CCCccccccCcccceEEEEecccccCCCCCEEEEEeC-CCcEEEE
Q 012799 149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT--GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIW 225 (456)
Q Consensus 149 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iw 225 (456)
|.+.|+.+.-. -.+++.+++.||.++.|.-.. +-........|...+.+++.+- ++-.+.+.+. |..++++
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-----dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-----DGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-----cceeEeeccCcccceeEE
Confidence 66667766544 567999999999999997653 2223334566777777777666 8888888777 9999999
Q ss_pred ECCCCeEEEEecC--cCccEEEEEeCCC-C--eEEE-EeCCCcEEEEECCCCe--EEEEeecCCcceEEEEecCcceeee
Q 012799 226 DVSLRKCVICLSG--HTLAVTCVKWGGD-G--VIYT-GSQDCTIKVWETTQGK--LIRELKGHGHWVNSLALSTEYALRT 297 (456)
Q Consensus 226 d~~~~~~~~~~~~--~~~~v~~~~~~~~-~--~l~~-~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~ 297 (456)
|+++-..+..++- -.+.+..+ .++. - .+++ ...+|.+.++|-.... ....-..|..+|..+.+.+.
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa----- 155 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQA----- 155 (558)
T ss_pred EeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecc-----
Confidence 9987655433322 12222222 2222 2 3333 3457899999977543 22333458889999988886
Q ss_pred ccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC-CC-------------ccccccccccE
Q 012799 298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-QP-------------KTRMTGHQQLV 363 (456)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~-------------~~~~~~~~~~v 363 (456)
++.+++....|.|.-|.....- .+ +..+.......
T Consensus 156 -------------------------------~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~p 204 (558)
T KOG0882|consen 156 -------------------------------GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEP 204 (558)
T ss_pred -------------------------------ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCc
Confidence 4558888888999999865311 01 11112234567
Q ss_pred eEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEe
Q 012799 364 NHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR 399 (456)
Q Consensus 364 ~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 399 (456)
.++.|+|+|..+.+-+.|..|++++.++|++++.+.
T Consensus 205 ts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 205 TSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred cceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence 899999999999999999999999999999887664
No 321
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.61 E-value=7.3e-05 Score=70.94 Aligned_cols=255 Identities=18% Similarity=0.183 Sum_probs=136.3
Q ss_pred CeEEEEECCCcEEEEeCCCCcceeEEecCCCC--EEEEEEcC--CCCEEEEEe---------CCCeEEEEeCCCCCCccc
Q 012799 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW--VLCIAWSA--DGKHLVSGS---------KAGELQCWDPQTGKPSGN 187 (456)
Q Consensus 121 ~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~--v~~~~~~~--~~~~l~s~~---------~dg~i~vwd~~~~~~~~~ 187 (456)
..++.++.++.|+-+|.++++.+......... -..+.-+| .+..++.++ .+|.+..+|..+|+...+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 56777888999999999999988776533221 01111122 224455553 367899999999987653
Q ss_pred cccCcccc-----------eE----EEEecccccCCCCCEEEEEeCCC------------------cEEEEECCCCeEEE
Q 012799 188 PLSGHKKW-----------IT----GISWEPVHLNAPCRRFVSASKDG------------------DARIWDVSLRKCVI 234 (456)
Q Consensus 188 ~~~~~~~~-----------v~----~~~~~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~ 234 (456)
........ +. ...|.+......+..++.++.++ .+.-+|..+++...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W 270 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW 270 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence 22211100 00 01111212222456777777665 79999999999888
Q ss_pred EecCcCcc-----------EEEEE-eCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccc
Q 012799 235 CLSGHTLA-----------VTCVK-WGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF 300 (456)
Q Consensus 235 ~~~~~~~~-----------v~~~~-~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 300 (456)
.+...... +..+. ..... .+++++.+|.+...|.++|+.+....... ..++..|+. +.....
T Consensus 271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~~~-vyv~~~ 346 (488)
T cd00216 271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDPGL-VYLGAF 346 (488)
T ss_pred EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCCce-EEEccc
Confidence 76421111 11111 11111 57788899999999999999887664220 112223321 111100
Q ss_pred cCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccccc-cc------ccE--eEEEECCC
Q 012799 301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-HQ------QLV--NHVYFSPD 371 (456)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~------~~v--~~~~~sp~ 371 (456)
..... +... ...+.....+|.+...|+.+++.....-.+ +. .+. ..+.. .
T Consensus 347 ~~~~~-~~~~------------------~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~ 405 (488)
T cd00216 347 HIPLG-LPPQ------------------KKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--A 405 (488)
T ss_pred ccccc-Cccc------------------ccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--c
Confidence 00000 0000 000011123455555555544433222111 00 111 11222 4
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799 372 GQWVASASFDKSIKLWNGTTGKFVAVFRG 400 (456)
Q Consensus 372 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 400 (456)
+.+|+.++.||.++.+|..+|+.+..++.
T Consensus 406 g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 406 GNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 67888999999999999999999988774
No 322
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=3.9e-08 Score=92.46 Aligned_cols=201 Identities=17% Similarity=0.233 Sum_probs=135.9
Q ss_pred cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC
Q 012799 141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG 220 (456)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg 220 (456)
+...++..|....+|++|+.+.++|+.|+..|.|+++++.+|.... ....|...|+.+.-+. +|..+++.+.-.
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~-s~ncH~SavT~vePs~-----dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE-SVNCHQSAVTLVEPSV-----DGSTQLTSSSSS 1165 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc-cccccccccccccccC-----Ccceeeeecccc
Confidence 3445666788999999999999999999999999999999998766 6888999999887555 888877765533
Q ss_pred --cEEEEECCC-CeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEee-c---CCcceEEEEecCc
Q 012799 221 --DARIWDVSL-RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK-G---HGHWVNSLALSTE 292 (456)
Q Consensus 221 --~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-~---~~~~i~~~~~~~~ 292 (456)
-..+|++.+ +...+++. .-.++.|+... .-+.|+......+||+.++.++.++- + ....-+...|+|.
T Consensus 1166 ~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1166 SPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC 1241 (1516)
T ss_pred CchHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCC
Confidence 478899864 33444443 23567777654 33445555678899999988776632 1 1112244556665
Q ss_pred ceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCC
Q 012799 293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG 372 (456)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~ 372 (456)
.. .++ .|| .+||.+.. ..+..+..... --.-.|+|+|
T Consensus 1242 D~------------------------------------LIl---ndG--vLWDvR~~-~aIh~FD~ft~-~~~G~FHP~g 1278 (1516)
T KOG1832|consen 1242 DT------------------------------------LIL---NDG--VLWDVRIP-EAIHRFDQFTD-YGGGGFHPSG 1278 (1516)
T ss_pred cc------------------------------------eEe---eCc--eeeeeccH-HHHhhhhhhee-cccccccCCC
Confidence 22 222 233 37997765 33333333221 1223699999
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEEe
Q 012799 373 QWVASASFDKSIKLWNGTTGKFVAVFR 399 (456)
Q Consensus 373 ~~l~s~~~dg~i~iwd~~~~~~~~~~~ 399 (456)
.-++.-+ .|||+++.+++....
T Consensus 1279 ~eVIINS-----EIwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1279 NEVIINS-----EIWDMRTFKLLHSVP 1300 (1516)
T ss_pred ceEEeec-----hhhhhHHHHHHhcCc
Confidence 9888865 689999887765443
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.60 E-value=5.2e-05 Score=74.75 Aligned_cols=239 Identities=16% Similarity=0.191 Sum_probs=135.9
Q ss_pred CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 012799 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (456)
Q Consensus 107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 186 (456)
..+.|.++.|..++.-++.+..+|.|.+-|.++.... ....-...|.+++|+||+..++..+.++++.+-.- +-.++.
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~ 144 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIA 144 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchh
Confidence 4578999999999999999999999999987765432 23335788999999999999999998888766542 122211
Q ss_pred c-ccc---CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE----
Q 012799 187 N-PLS---GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG---- 257 (456)
Q Consensus 187 ~-~~~---~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~---- 257 (456)
. .+. ...+....+-|-. .. .-+-|+. |.....+................=+.+.|-.|| ++++.
T Consensus 145 E~~L~~d~~~~sk~v~VGwGr-----ke-Tqfrgs~-gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~ 217 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGR-----KE-TQFRGSE-GRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVES 217 (1265)
T ss_pred ccccccccccccccceecccc-----cc-eeeecch-hhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEec
Confidence 0 010 0011112222221 00 0111111 111111111000000000112223568999999 55552
Q ss_pred eCC-CcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEE-
Q 012799 258 SQD-CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG- 335 (456)
Q Consensus 258 ~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 335 (456)
..+ ..|++||.+ |..-..-.....--.+++|-|.+.+ +++-
T Consensus 218 ~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~------------------------------------iA~iq 260 (1265)
T KOG1920|consen 218 ETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSL------------------------------------IAAIQ 260 (1265)
T ss_pred cCCceeEEEeccc-chhhcccCcccccccceeecCCCCe------------------------------------Eeeee
Confidence 223 789999976 4433322223333456778876433 4432
Q ss_pred --eCCCcEEEEecCCCCC---CccccccccccEeEEEECCCCCEEEE---EECCCcEEEEeCCCC
Q 012799 336 --SDDFTMFLWEPAVSKQ---PKTRMTGHQQLVNHVYFSPDGQWVAS---ASFDKSIKLWNGTTG 392 (456)
Q Consensus 336 --~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~s---~~~dg~i~iwd~~~~ 392 (456)
++|+.|.+|. +++-. ...........+..++|+.++..||+ ......|++|-+.+.
T Consensus 261 ~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 261 CKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ecCCCCcEEEEe-cCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 4566799998 43321 11122333445899999999999887 444455999988764
No 324
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=1.4e-05 Score=75.70 Aligned_cols=209 Identities=11% Similarity=0.114 Sum_probs=134.0
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccc-eEEEEecccccCCCCCEEEEEeCCCc-----EEEEECCCC
Q 012799 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKW-ITGISWEPVHLNAPCRRFVSASKDGD-----ARIWDVSLR 230 (456)
Q Consensus 157 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~ 230 (456)
+|++.+..++.|+.+|.|.+.+-. .....-+..+... |..+.... ..++|++.+.|+. +++||++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~-----~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILN-----KQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhccc-----CceEEEEEeecCCCCceEEEEeccccc
Confidence 466788899999999998887743 2221134444444 32222211 3357777777654 899998632
Q ss_pred ------eEE--EEecC-----cCccEEEEEeCCCC-eEEEEeCCCcEEEEECC----CCeEEEEeecCCcceEEEEecCc
Q 012799 231 ------KCV--ICLSG-----HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT----QGKLIRELKGHGHWVNSLALSTE 292 (456)
Q Consensus 231 ------~~~--~~~~~-----~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~i~~~~~~~~ 292 (456)
.++ ..+.. ...++.+++++.+- .+++|-.+|.|..+.-. .+...........+|+.+++..+
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 333 12212 35678888888776 88899999999988422 12222233345678999998876
Q ss_pred ceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCC
Q 012799 293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG 372 (456)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~ 372 (456)
. ..++....-..|.+|.+.........+..|.....|..+++..
T Consensus 183 ~------------------------------------~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t 226 (933)
T KOG2114|consen 183 G------------------------------------KSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGT 226 (933)
T ss_pred C------------------------------------ceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCC
Confidence 3 2223333445788888774443344477788889999999866
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEEe-cccccEEEEE
Q 012799 373 QWVASASFDKSIKLWNGTTGKFVAVFR-GHVGPVYQIR 409 (456)
Q Consensus 373 ~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~ 409 (456)
..+++++ +..+.+|+.....+...+. +|......+.
T Consensus 227 ~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~ 263 (933)
T KOG2114|consen 227 YQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEMLVFS 263 (933)
T ss_pred ccEEEec-CceEEEEcCCCcceeeeecCCCeEEEEEEe
Confidence 5455444 4469999988777777887 7776655553
No 325
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.56 E-value=2.5e-05 Score=70.88 Aligned_cols=94 Identities=19% Similarity=0.228 Sum_probs=60.4
Q ss_pred CCCCCeEEEEE---------CCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc
Q 012799 117 SPDGRQLASGS---------GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187 (456)
Q Consensus 117 s~~~~~l~~~~---------~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 187 (456)
|||+++++... ..+.+.|+|+.+++...... ....+....|+|+|+.++... ++.|.+++..++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 67888777632 34579999999865443322 367789999999999999875 57899999877654332
Q ss_pred cccC-------c---------ccceEEEEecccccCCCCCEEEEEe
Q 012799 188 PLSG-------H---------KKWITGISWEPVHLNAPCRRFVSAS 217 (456)
Q Consensus 188 ~~~~-------~---------~~~v~~~~~~~~~~~~~~~~l~~~~ 217 (456)
...+ - -+.-.++-|+| ++++|+...
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-----d~~~la~~~ 119 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-----DSKYLAFLR 119 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-T-----TSSEEEEEE
T ss_pred ccccceeEEcCccceeccccccccccceEECC-----CCCEEEEEE
Confidence 2222 0 11224677888 888887654
No 326
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.2e-05 Score=69.42 Aligned_cols=147 Identities=17% Similarity=0.221 Sum_probs=96.6
Q ss_pred ccccccCCcccEEEEEECCCCC-eEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEE
Q 012799 100 CSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCW 177 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vw 177 (456)
...-+.+|...|..++|||..+ ++..++.+.+|+|.|+++...+..+..+ ..+.+++|.-| .++|..|-..|.|.+|
T Consensus 185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 3456788999999999999877 7888899999999999999888888877 88999999875 4577788889999999
Q ss_pred eCCCCCCccccccC--cccceEEEEecccc-cCCCCCEEEEEeCCCcEEEEECCC----CeEEEEecCcCccEEEEEeCC
Q 012799 178 DPQTGKPSGNPLSG--HKKWITGISWEPVH-LNAPCRRFVSASKDGDARIWDVSL----RKCVICLSGHTLAVTCVKWGG 250 (456)
Q Consensus 178 d~~~~~~~~~~~~~--~~~~v~~~~~~~~~-~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~ 250 (456)
|++..+.....+.+ ...+|..++..+.. ....+..++....+ +..|++.- ..++..+ +..+...++++.+
T Consensus 264 D~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel-e~pG~cismqy~~ 340 (463)
T KOG1645|consen 264 DMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL-EPPGICISMQYHG 340 (463)
T ss_pred EccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc-CCCcceeeeeecC
Confidence 99876543222222 22345444433311 11234444444433 45555431 1122222 2244555666665
No 327
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.53 E-value=2.4e-05 Score=77.00 Aligned_cols=228 Identities=12% Similarity=0.148 Sum_probs=135.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC
Q 012799 149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228 (456)
Q Consensus 149 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 228 (456)
....|.++.|..++..++.+..+|.|.+-|.++.... ....-...|.+++|+| ++..++..+..+++.+-+-
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~-----Dee~l~liT~~~tll~mT~- 138 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWSP-----DEELLALITGRQTLLFMTK- 138 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEccccccee--eeeeccCceEEEeecC-----CCcEEEEEeCCcEEEEEec-
Confidence 3468999999999999999999999999998877654 3455677899999999 9999999998887766532
Q ss_pred CCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEE-----EEee-----cCCcceEEEEecCcceeeec
Q 012799 229 LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLI-----RELK-----GHGHWVNSLALSTEYALRTG 298 (456)
Q Consensus 229 ~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~-----~~~~~i~~~~~~~~~~~~~~ 298 (456)
+..++....- ...-.+.+.++.++....=.-+.-..|+.. ...+ ...+.-+++.|-.+
T Consensus 139 ~f~~i~E~~L------~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD------ 206 (1265)
T KOG1920|consen 139 DFEPIAEKPL------DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD------ 206 (1265)
T ss_pred cccchhcccc------ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC------
Confidence 2222211110 011112223344333332222221111110 0000 01112244666655
Q ss_pred cccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE-----EeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCC
Q 012799 299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS-----GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ 373 (456)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 373 (456)
++++++ ......|++||-. +. .-..-....+.-.+++|-|.|.
T Consensus 207 ------------------------------g~~fAVs~~~~~~~~RkirV~drE-g~-Lns~se~~~~l~~~LsWkPsgs 254 (1265)
T KOG1920|consen 207 ------------------------------GEYFAVSFVESETGTRKIRVYDRE-GA-LNSTSEPVEGLQHSLSWKPSGS 254 (1265)
T ss_pred ------------------------------CcEEEEEEEeccCCceeEEEeccc-ch-hhcccCcccccccceeecCCCC
Confidence 445555 2333799999933 22 1111122233446789999999
Q ss_pred EEEEE---ECCCcEEEEeCCCCeE----EEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEE
Q 012799 374 WVASA---SFDKSIKLWNGTTGKF----VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS 446 (456)
Q Consensus 374 ~l~s~---~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s 446 (456)
++++- +.|+.|.+|.- +|-. .-.+.....++..+ +|+.++..||.
T Consensus 255 ~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L---------------------------~Wns~sdiLAv 306 (1265)
T KOG1920|consen 255 LIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEEL---------------------------AWNSNSDILAV 306 (1265)
T ss_pred eEeeeeecCCCCcEEEEec-CCccccccccCCcccccchhee---------------------------eecCCCCceee
Confidence 99885 34567999984 3332 22223333346666 99999999998
Q ss_pred ---eeCCCceEEC
Q 012799 447 ---GSKDSTLKVT 456 (456)
Q Consensus 447 ---~s~Dg~v~iW 456 (456)
......|++|
T Consensus 307 ~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 307 VTSNLENSLVQLW 319 (1265)
T ss_pred eecccccceEEEE
Confidence 5555568888
No 328
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.45 E-value=3e-05 Score=70.36 Aligned_cols=117 Identities=19% Similarity=0.266 Sum_probs=75.2
Q ss_pred cEEEEEECCCCCeEEEEECCCcEEEEeCCCCc-------------------------------------------ceeEE
Q 012799 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-------------------------------------------PMFKC 146 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~-------------------------------------------~~~~~ 146 (456)
.|+.+.|+++..-||+|...|.|.||.....+ +...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999998889999999999998753211 11112
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc-------cccCcccceEEEEecccccCCCC---CEEEEE
Q 012799 147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN-------PLSGHKKWITGISWEPVHLNAPC---RRFVSA 216 (456)
Q Consensus 147 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~---~~l~~~ 216 (456)
....++|++++.+ |=.++|.|..+|.+.|.|++....+.. ........++++.|.......|+ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 2346889999997 555999999999999999976654332 11123346778888765554444 467777
Q ss_pred eCCCcEEEEEC
Q 012799 217 SKDGDARIWDV 227 (456)
Q Consensus 217 ~~dg~i~iwd~ 227 (456)
+..|.+.+|.+
T Consensus 162 Tn~G~v~~fkI 172 (395)
T PF08596_consen 162 TNSGNVLTFKI 172 (395)
T ss_dssp ETTSEEEEEEE
T ss_pred eCCCCEEEEEE
Confidence 77788777765
No 329
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.44 E-value=0.00089 Score=58.68 Aligned_cols=231 Identities=15% Similarity=0.126 Sum_probs=129.6
Q ss_pred CCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc---------
Q 012799 118 PDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP--------- 188 (456)
Q Consensus 118 ~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--------- 188 (456)
..++.|+.|+.+| +.+++........... +...|..+...|+-+.+++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 3578899999998 9999983332222222 333499999999877776664 499999998765443211
Q ss_pred ----ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC-----eEEEEecCcCccEEEEEeCCCCeEEEEeC
Q 012799 189 ----LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-----KCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259 (456)
Q Consensus 189 ----~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 259 (456)
.......+...+ ..... .+...++......|.+|..... +....+. -...+.+++|.++ .++.|..
T Consensus 82 ~~~~~~~~~~~v~~f~--~~~~~-~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~-~i~v~~~ 156 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFA--VNGGH-EGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGN-KICVGTS 156 (275)
T ss_pred cccccccccCCeeEEe--ecccc-ccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCC-EEEEEeC
Confidence 111122233333 01111 3334444455568888877653 3334443 3477889999844 6666665
Q ss_pred CCcEEEEECCCCeEEEEeecCCc------------ceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCC
Q 012799 260 DCTIKVWETTQGKLIRELKGHGH------------WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327 (456)
Q Consensus 260 dg~i~iwd~~~~~~~~~~~~~~~------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (456)
++ ..+.|+.++.....+..... ++..+...
T Consensus 157 ~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 198 (275)
T PF00780_consen 157 KG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS------------------------------------- 198 (275)
T ss_pred Cc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-------------------------------------
Confidence 44 88899987665443321111 11111111
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCCc-cccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecc
Q 012799 328 APERLVSGSDDFTMFLWEPAVSKQPK-TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH 401 (456)
Q Consensus 328 ~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 401 (456)
++++|++ . |..-.+.| ..+.... ..+.- ...+.++++. ..||+..+. +.|.||++.++++++++...
T Consensus 199 ~~e~Ll~-~-~~~g~fv~-~~G~~~r~~~i~W-~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 199 DNEFLLC-Y-DNIGVFVN-KNGEPSRKSTIQW-SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred CceEEEE-e-cceEEEEc-CCCCcCcccEEEc-CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 1233443 2 23333334 2232222 12222 2345566663 457777665 55999999999999988754
No 330
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.43 E-value=2e-05 Score=71.94 Aligned_cols=76 Identities=30% Similarity=0.463 Sum_probs=65.2
Q ss_pred CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 012799 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (456)
Q Consensus 106 ~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 183 (456)
.....|.|++++|+.+.|+.|+.||+|.+||...+... +....-.++.++|+|+|..+++|+..|.+.+||+.-+.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 57788999999999999999999999999998765333 33355668999999999999999999999999986543
No 331
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.42 E-value=0.00018 Score=61.54 Aligned_cols=177 Identities=19% Similarity=0.234 Sum_probs=117.6
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEE-----CCCcEEEEeCC-CCcceeEEecCCCCEEEEEEcCCCCEEEEEe-----
Q 012799 101 SATIAGHTEAVLSVAFSPDGRQLASGS-----GDTTVRLWDLN-TQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----- 169 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~-----~d~~v~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----- 169 (456)
-+.|.|| -.||+||++|++.- ..|.|-|||.. +-+.+.++..|.-....+.+.|||+.|+++-
T Consensus 49 gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~T 122 (305)
T PF07433_consen 49 GRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIET 122 (305)
T ss_pred CCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCcc
Confidence 4567788 68999999999863 45789999998 5667778888877788899999998777752
Q ss_pred -------------CCCeEEEEeCCCCCCccc-cc--cCcccceEEEEecccccCCCCCEEEEEeCCCc-------EEEEE
Q 012799 170 -------------KAGELQCWDPQTGKPSGN-PL--SGHKKWITGISWEPVHLNAPCRRFVSASKDGD-------ARIWD 226 (456)
Q Consensus 170 -------------~dg~i~vwd~~~~~~~~~-~~--~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~-------i~iwd 226 (456)
.+-++...|..+|+.+.+ .+ .-|...+..+++.+ +|..++..-..|. +-+++
T Consensus 123 hpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-----~G~V~~a~Q~qg~~~~~~PLva~~~ 197 (305)
T PF07433_consen 123 HPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-----DGTVAFAMQYQGDPGDAPPLVALHR 197 (305)
T ss_pred CcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC-----CCcEEEEEecCCCCCccCCeEEEEc
Confidence 123455666677765443 23 33666788888877 6655555443332 33333
Q ss_pred CCCCeEEEEe-------cCcCccEEEEEeCCCC-eE-EEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCc
Q 012799 227 VSLRKCVICL-------SGHTLAVTCVKWGGDG-VI-YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE 292 (456)
Q Consensus 227 ~~~~~~~~~~-------~~~~~~v~~~~~~~~~-~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 292 (456)
... .+..+ ..-...+-+|++++++ .+ +++=..|.+.+||..+++.+..... ..+..++..++
T Consensus 198 ~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~ 268 (305)
T PF07433_consen 198 RGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDD 268 (305)
T ss_pred CCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCC
Confidence 222 22222 1235679999999998 44 4455577899999999988876643 23445554443
No 332
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.42 E-value=0.00068 Score=62.25 Aligned_cols=61 Identities=15% Similarity=0.298 Sum_probs=49.4
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCC
Q 012799 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG 392 (456)
Q Consensus 329 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 392 (456)
.+.++.|+.||.|.+||...... ......-.++.++|+|+|.++++|+..|.+.+||+.-.
T Consensus 271 E~kLvlGC~DgSiiLyD~~~~~t---~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 271 EDKLVLGCEDGSIILYDTTRGVT---LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cceEEEEecCCeEEEEEcCCCee---eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 66799999999999999654422 23334456789999999999999999999999997643
No 333
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.40 E-value=0.00038 Score=56.97 Aligned_cols=122 Identities=19% Similarity=0.134 Sum_probs=85.5
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCc
Q 012799 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL 241 (456)
Q Consensus 162 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 241 (456)
..+++.|+..+.+.--|..+|+.......+..-+-..+. -|++++.|...|.+++.+.+++.....+.....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--------vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--------VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--------ECCEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence 457778888999999999999876544433332222222 346799999999999999999987776643322
Q ss_pred cEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecC
Q 012799 242 AVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALST 291 (456)
Q Consensus 242 ~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~ 291 (456)
--......+++ .+..|+.|++.+..|.++...+...+-.+....+-++.+
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP 145 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecC
Confidence 22223445566 999999999999999999888888765554444444444
No 334
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=1.2e-05 Score=75.94 Aligned_cols=111 Identities=15% Similarity=0.309 Sum_probs=86.3
Q ss_pred CEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEEC
Q 012799 152 WVLCIAWSADGKHLVSGSK----AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV 227 (456)
Q Consensus 152 ~v~~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 227 (456)
.-+-.+|+|...++++++. .|.|.||- ++|++.... ...-.+++++|+| ..-.|+.|-.-|.+.+|..
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V--t~P~hatSLCWHp-----e~~vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV--TYPVHATSLCWHP-----EEFVLAQGWEMGVSDVQKT 88 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc--ccceehhhhccCh-----HHHHHhhccccceeEEEec
Confidence 3345678998888888764 57888884 566654311 1223456799999 4456778888899999999
Q ss_pred CCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCC
Q 012799 228 SLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQ 270 (456)
Q Consensus 228 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~ 270 (456)
.+.+.-.....|..+|..+.|+++| .++++..-|.+.+|....
T Consensus 89 ~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 89 NTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred CCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 8887777778899999999999999 999999999999998763
No 335
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.36 E-value=0.00013 Score=67.99 Aligned_cols=140 Identities=14% Similarity=0.149 Sum_probs=102.9
Q ss_pred CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEE-ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCc
Q 012799 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185 (456)
Q Consensus 107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 185 (456)
|...|.--+++..+++++.|+.-|.+++|+-..++....- .+..+.+.....+++..++|.|+..|.|.++.++.+.+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 4455666667778999999999999999997766544332 234556677788888999999999999999998875432
Q ss_pred cc-----cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC----eEEEEecCcCccEEEEEeCCC
Q 012799 186 GN-----PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR----KCVICLSGHTLAVTCVKWGGD 251 (456)
Q Consensus 186 ~~-----~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~ 251 (456)
.. .-..|...|++++|++ ++..+++|...|+|..-.+.+. .....+....+.|..+.+...
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~-----~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~ 181 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSK-----NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQS 181 (726)
T ss_pred cceeeccccccCCceEEEEEecc-----cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccc
Confidence 21 1234778899999999 9999999999999999888762 112223334566777776644
No 336
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.35 E-value=2.1e-07 Score=84.71 Aligned_cols=200 Identities=16% Similarity=0.293 Sum_probs=129.2
Q ss_pred CCCCEEEEEEcCCC--CEEEEEeCCCeEEEEeCCCCCCc-cccccCcccceEEEEecccccCCCCCEEEEEe----CCCc
Q 012799 149 HKNWVLCIAWSADG--KHLVSGSKAGELQCWDPQTGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSAS----KDGD 221 (456)
Q Consensus 149 ~~~~v~~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~----~dg~ 221 (456)
....+.|++++.+. ..++.|..+|.|.+-..+...-. .....++....++++|.+. |.+.||+|- .|..
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneL----Dtn~LAagldkhrnds~ 130 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNEL----DTNHLAAGLDKHRNDSS 130 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccc----cHHHHHhhhhhhcccCC
Confidence 34557777776543 47788999999999887654332 4456778889999999985 556677763 3678
Q ss_pred EEEEECCCC--eEE--EEecC-cCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCe-EEEEeecCCcceEEEEecCcce
Q 012799 222 ARIWDVSLR--KCV--ICLSG-HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK-LIRELKGHGHWVNSLALSTEYA 294 (456)
Q Consensus 222 i~iwd~~~~--~~~--~~~~~-~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~ 294 (456)
+.|||+.++ .+. ..+.+ ......+++|..+. .+++|.....+.++|++... ....+ ....+..+.+.|-
T Consensus 131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~-- 206 (783)
T KOG1008|consen 131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPF-- 206 (783)
T ss_pred ccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCC--
Confidence 999999876 221 11222 23445578888666 77788888899999998432 11111 1223444555542
Q ss_pred eeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEe-cCCCCCCccccccccc----cEeEEEEC
Q 012799 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE-PAVSKQPKTRMTGHQQ----LVNHVYFS 369 (456)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~----~v~~~~~s 369 (456)
.+++++ ...||.|.+|| .++.+.+...+...+. .+..++|+
T Consensus 207 ---------------------------------~~nY~c-s~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ayc 252 (783)
T KOG1008|consen 207 ---------------------------------SPNYFC-SNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYC 252 (783)
T ss_pred ---------------------------------CCCcee-ccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEec
Confidence 134444 45599999999 5555555544433333 48999999
Q ss_pred CCC-CEEEEEEC-CCcEEEEeCC
Q 012799 370 PDG-QWVASASF-DKSIKLWNGT 390 (456)
Q Consensus 370 p~~-~~l~s~~~-dg~i~iwd~~ 390 (456)
|.. ..+++.+. .++|+++|+.
T Consensus 253 Ptrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 253 PTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cCCcchhhhhccCcceEEEeccc
Confidence 942 24555554 4789999975
No 337
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.33 E-value=0.0015 Score=62.45 Aligned_cols=202 Identities=17% Similarity=0.137 Sum_probs=112.8
Q ss_pred CCeEEEEECCCcEEEEeCCCCcceeEEecCC-CCEE---E-------EEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHK-NWVL---C-------IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (456)
Q Consensus 120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~-~~v~---~-------~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 188 (456)
+..++.++.++.|.-.|..+++.+.++.... ..+. + +++ .+..++.++.|+.+.-.|.++|+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4466677778899999999999887765221 1111 1 122 2346777888999999999999876533
Q ss_pred ccCcccceEEEEecccccCCCCCEEEEEe------CCCcEEEEECCCCeEEEEecCcCc---------------------
Q 012799 189 LSGHKKWITGISWEPVHLNAPCRRFVSAS------KDGDARIWDVSLRKCVICLSGHTL--------------------- 241 (456)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~--------------------- 241 (456)
.......-..+.-.|.- .+..++++. .+|.|..+|.++++.+..+..-..
T Consensus 147 ~~~~~~~~~~~tssP~v---~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLV---VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred ccccccccccccCCcEE---ECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 22111100111112211 123455543 268999999999988776532110
Q ss_pred ----------cE-EEEEeCCCC-eEEEEeCC-----C-----------cEEEEECCCCeEEEEeecCCcceEEEEecCcc
Q 012799 242 ----------AV-TCVKWGGDG-VIYTGSQD-----C-----------TIKVWETTQGKLIRELKGHGHWVNSLALSTEY 293 (456)
Q Consensus 242 ----------~v-~~~~~~~~~-~l~~~~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~ 293 (456)
.+ ..++++++. +++.+..+ + .|.-.|+++|+....++.....+.........
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 01 123556644 55554422 2 56667888888777776544433332221111
Q ss_pred eeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC
Q 012799 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK 350 (456)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 350 (456)
.+.....+. .....++.+..+|.+++.|.++++
T Consensus 304 ~l~d~~~~G------------------------~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 304 ILFDLKKDG------------------------KPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred EEEEeccCC------------------------cEEEEEEEeCCCceEEEEECCCCc
Confidence 111000000 011357889999999999966554
No 338
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.30 E-value=0.0004 Score=65.31 Aligned_cols=64 Identities=14% Similarity=0.053 Sum_probs=43.2
Q ss_pred CCCCEEE-EEeCCCcEEEEecCCCCCCc-----------cccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCC
Q 012799 327 NAPERLV-SGSDDFTMFLWEPAVSKQPK-----------TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391 (456)
Q Consensus 327 ~~~~~l~-~~~~dg~i~iwd~~~~~~~~-----------~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 391 (456)
+++.+++ ++..+.++.+.|+.+..... ....- .......+|.++|+...|--.|..|..|++..
T Consensus 330 PDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 330 PDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 3355555 45568999999987644211 11111 12245678999999888888999999999876
No 339
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.20 E-value=0.0023 Score=54.07 Aligned_cols=184 Identities=11% Similarity=0.155 Sum_probs=105.4
Q ss_pred cccCCcccEEEEEECCCCC-eEEEEECCCcEEEEeCCCCcceeEEecC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799 103 TIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGH-KNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (456)
Q Consensus 103 ~l~~h~~~V~~~~~s~~~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 180 (456)
.+.+-.+.+..++|+|+.+ ++++....+.|...+.+ |+.+..+.-. .+-.-.|++..++.++++.-+++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4566667799999999755 55566677888888864 6777766533 3567889998888777777678999999884
Q ss_pred CCCCcc----------ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC---CeEEEE--e------cCc
Q 012799 181 TGKPSG----------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL---RKCVIC--L------SGH 239 (456)
Q Consensus 181 ~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~--~------~~~ 239 (456)
...... .....+...+..++|.| .++.|+.+-...-..+|.+.. ...+.. . ...
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-----~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-----KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEET-----TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcC-----CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 432110 01123456689999999 667777777777777776653 111111 1 123
Q ss_pred CccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCC---------cceEEEEecCcc
Q 012799 240 TLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHG---------HWVNSLALSTEY 293 (456)
Q Consensus 240 ~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~~~~~ 293 (456)
...+.+++++|.. .++....+..|..+| .+|+.+..+.-.. .....|++.+++
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G 233 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG 233 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCC
Confidence 4568899999865 666677788899999 6777766654332 235567777663
No 340
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.20 E-value=0.0012 Score=59.94 Aligned_cols=178 Identities=22% Similarity=0.264 Sum_probs=97.2
Q ss_pred cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEE-ec-------C---------CCCEEEEEEcCCCCEEEEEeC
Q 012799 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-TG-------H---------KNWVLCIAWSADGKHLVSGSK 170 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~~-------~---------~~~v~~~~~~~~~~~l~s~~~ 170 (456)
...+....|||+|+.+|... ++.|.+++..++...... .+ - -+.-..+.||||+++||....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 67788999999999999885 578999998776433211 11 0 122356889999999987643
Q ss_pred CC------------------------------------eEEEEeCCCCCCccccc----cCcccceEEEEecccccCCCC
Q 012799 171 AG------------------------------------ELQCWDPQTGKPSGNPL----SGHKKWITGISWEPVHLNAPC 210 (456)
Q Consensus 171 dg------------------------------------~i~vwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~ 210 (456)
|. .+.++|+.+++...... ......+..+.|.+ ++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~-----d~ 195 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP-----DG 195 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE-----TT
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC-----CC
Confidence 31 24445555554321111 12345577888877 66
Q ss_pred CEEEEEeC--C---CcEEEEECCCCeEEEEecC-cCc---cEEEEEeC-CCC--eEEEEeCCCc--EEEEECCCCeEEEE
Q 012799 211 RRFVSASK--D---GDARIWDVSLRKCVICLSG-HTL---AVTCVKWG-GDG--VIYTGSQDCT--IKVWETTQGKLIRE 276 (456)
Q Consensus 211 ~~l~~~~~--d---g~i~iwd~~~~~~~~~~~~-~~~---~v~~~~~~-~~~--~l~~~~~dg~--i~iwd~~~~~~~~~ 276 (456)
..++..-. + ..+.+.|..++.+...... ... .-....+. +++ .+.....+|. |.+++...+.. +.
T Consensus 196 ~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~ 274 (353)
T PF00930_consen 196 KRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQ 274 (353)
T ss_dssp EEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EE
T ss_pred cEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-ec
Confidence 64444322 2 2356667766544333221 111 12234443 555 5666667775 55667666553 34
Q ss_pred eecCCcceEE-EEecCc
Q 012799 277 LKGHGHWVNS-LALSTE 292 (456)
Q Consensus 277 ~~~~~~~i~~-~~~~~~ 292 (456)
+....-.|.. +.++++
T Consensus 275 lT~G~~~V~~i~~~d~~ 291 (353)
T PF00930_consen 275 LTSGDWEVTSILGWDED 291 (353)
T ss_dssp SS-SSS-EEEEEEEECT
T ss_pred cccCceeecccceEcCC
Confidence 4444445544 455555
No 341
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.17 E-value=6.4e-05 Score=69.86 Aligned_cols=117 Identities=17% Similarity=0.202 Sum_probs=88.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC
Q 012799 149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228 (456)
Q Consensus 149 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 228 (456)
+...|.--++...+++++.|+.-|.+.+|+-..++.......+..+.+.....++ +..++|+|+..|.|.++-+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-----~e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-----VEYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-----hhHhhhhhcCCceEEeehhh
Confidence 4455555566678899999999999999998887765533334445555666666 66788889999999999876
Q ss_pred CCeEE---E--Ee-cCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCC
Q 012799 229 LRKCV---I--CL-SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQ 270 (456)
Q Consensus 229 ~~~~~---~--~~-~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~ 270 (456)
.+.+. . .. +.|...|++++|++++ .+++|...|.|..-.+.+
T Consensus 107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 107 KELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 54321 1 11 2377899999999999 999999999999888876
No 342
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.5e-05 Score=72.87 Aligned_cols=95 Identities=19% Similarity=0.272 Sum_probs=81.5
Q ss_pred cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 012799 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVL-CIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 186 (456)
.-.|.-+.|+|.-.++|++..+|.|.+..++ .+.+.++.-|...++ +++|.|||+.||.|-.||+|++.|.+++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3457789999999999999999999999988 777888886777777 99999999999999999999999999998776
Q ss_pred ccccCcccceEEEEecc
Q 012799 187 NPLSGHKKWITGISWEP 203 (456)
Q Consensus 187 ~~~~~~~~~v~~~~~~~ 203 (456)
.........|.++-|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 54555667788888865
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.12 E-value=0.0018 Score=59.97 Aligned_cols=143 Identities=14% Similarity=0.099 Sum_probs=78.2
Q ss_pred CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 012799 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (456)
Q Consensus 107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 186 (456)
..-....+.++|+|++++.+ .||.-.|+.....+... .+.-...+|.+.+ .+|+-...++|.++.--+.....
T Consensus 31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-
T ss_pred CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccce
Confidence 34457789999999998885 57788888743333222 2345668898854 56766668889996332222211
Q ss_pred ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEE
Q 012799 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVW 266 (456)
Q Consensus 187 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iw 266 (456)
..... ..+..+- .|..|...+. +.|.+||..+++.+..+... +|..+.|++++.+++-..+..+.++
T Consensus 104 ~i~~~--~~~~~If--------~G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il 170 (443)
T PF04053_consen 104 SIKLP--FSVEKIF--------GGNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYIL 170 (443)
T ss_dssp ----S--S-EEEEE---------SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEE
T ss_pred EEcCC--cccceEE--------cCcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEE
Confidence 11111 1233332 2456666655 48999999999999998643 4899999999944444445567777
Q ss_pred ECC
Q 012799 267 ETT 269 (456)
Q Consensus 267 d~~ 269 (456)
+..
T Consensus 171 ~~~ 173 (443)
T PF04053_consen 171 KYN 173 (443)
T ss_dssp EE-
T ss_pred Eec
Confidence 654
No 344
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.07 E-value=0.00047 Score=64.86 Aligned_cols=145 Identities=12% Similarity=0.063 Sum_probs=89.1
Q ss_pred EECCCCCeEEE-EECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcc
Q 012799 115 AFSPDGRQLAS-GSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK 193 (456)
Q Consensus 115 ~~s~~~~~l~~-~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 193 (456)
=++|||+.+.. .-..+.+.+.|.++.+...++.-. +....++++|+|+++++.+.+. +.+..+........
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNs-------E~G~tl~em~a~e~ 270 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNS-------EEGVTLAEMMAAER 270 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCc-------ccCcceeeeccccC
Confidence 35678876543 335577888898887776666532 2456789999999998886432 11221111111111
Q ss_pred cceEEEEeccc---ccCCCCCEEEEEeCCCcEEEEECCC-----CeEEEEecCcCccEEEEEeCCCC--eEEEEeCCCcE
Q 012799 194 KWITGISWEPV---HLNAPCRRFVSASKDGDARIWDVSL-----RKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTI 263 (456)
Q Consensus 194 ~~v~~~~~~~~---~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i 263 (456)
. ..+.|... ....+|++... .++.|.+.|..+ .+.+..+. -......+.++||| .++++..+.++
T Consensus 271 d--~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tV 345 (635)
T PRK02888 271 D--WVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTV 345 (635)
T ss_pred c--eEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcE
Confidence 1 23333331 12236666665 357899999988 34444443 45566789999999 44555668999
Q ss_pred EEEECCCCe
Q 012799 264 KVWETTQGK 272 (456)
Q Consensus 264 ~iwd~~~~~ 272 (456)
.++|+.+.+
T Consensus 346 SVIDv~k~k 354 (635)
T PRK02888 346 TVIDVRKLD 354 (635)
T ss_pred EEEEChhhh
Confidence 999998754
No 345
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.07 E-value=0.00077 Score=62.06 Aligned_cols=166 Identities=23% Similarity=0.260 Sum_probs=103.8
Q ss_pred cccccccCCcccEEEEEECCCCCeEEEEE---CC-CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEE-eCCCe
Q 012799 99 RCSATIAGHTEAVLSVAFSPDGRQLASGS---GD-TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-SKAGE 173 (456)
Q Consensus 99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~~---~d-~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~ 173 (456)
...+.+..-...+..-+|+|+++.++..+ .. ..+.++++++++....+. ..+.-...+|+|||+.|+.+ ..||.
T Consensus 183 ~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 183 YNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred cceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCC
Confidence 33445555667788889999998776553 22 369999999887665554 44445667999999987755 45665
Q ss_pred --EEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC-C--cEEEEECCCCeEEEEecCcCccEEEEEe
Q 012799 174 --LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-G--DARIWDVSLRKCVICLSGHTLAVTCVKW 248 (456)
Q Consensus 174 --i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 248 (456)
|.+.|+..+.... +....+.-..-.|+| +|+.++..+.. | .|.++|.+...... +......-..-.|
T Consensus 262 ~~iy~~dl~~~~~~~--Lt~~~gi~~~Ps~sp-----dG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~~~~~~~p~~ 333 (425)
T COG0823 262 PDIYLMDLDGKNLPR--LTNGFGINTSPSWSP-----DGSKIVFTSDRGGRPQIYLYDLEGSQVTR-LTFSGGGNSNPVW 333 (425)
T ss_pred ccEEEEcCCCCccee--cccCCccccCccCCC-----CCCEEEEEeCCCCCcceEEECCCCCceeE-eeccCCCCcCccC
Confidence 6666777666332 333333334666777 99998877653 3 46667776665432 2222222226788
Q ss_pred CCCC-eEEEEeC-CCc--EEEEECCCCeE
Q 012799 249 GGDG-VIYTGSQ-DCT--IKVWETTQGKL 273 (456)
Q Consensus 249 ~~~~-~l~~~~~-dg~--i~iwd~~~~~~ 273 (456)
+|+| +++..+. +|. |.+.|+.++..
T Consensus 334 SpdG~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 334 SPDGDKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred CCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence 9999 4444433 454 66666665543
No 346
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.06 E-value=0.0065 Score=52.98 Aligned_cols=241 Identities=18% Similarity=0.196 Sum_probs=130.7
Q ss_pred EEEECCCCCeEEEEE----------CCCcEEEEeCCCCcceeEEe--cC-C----CCEEEEEEcCCCCEEEEEe--CCCe
Q 012799 113 SVAFSPDGRQLASGS----------GDTTVRLWDLNTQTPMFKCT--GH-K----NWVLCIAWSADGKHLVSGS--KAGE 173 (456)
Q Consensus 113 ~~~~s~~~~~l~~~~----------~d~~v~vwd~~~~~~~~~~~--~~-~----~~v~~~~~~~~~~~l~s~~--~dg~ 173 (456)
.+..+|+++.+++++ ..-.|.+||..+-.+...+. .. . .....++++.|+++++... --..
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 367899999888753 23369999999987666443 21 1 1223467888999888754 3457
Q ss_pred EEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC-CCeEEEEe----cCcCccE-EEEE
Q 012799 174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-LRKCVICL----SGHTLAV-TCVK 247 (456)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~----~~~~~~v-~~~~ 247 (456)
|.|-|+..++.+..+-. .+ ....| |. ..+.|.+-+.||.+.-..+. .|+..... .....++ ..-+
T Consensus 120 VtVVDl~~~kvv~ei~~--PG--C~~iy-P~----~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~ 190 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDT--PG--CWLIY-PS----GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPA 190 (342)
T ss_dssp EEEEETTTTEEEEEEEG--TS--EEEEE-EE----ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--E
T ss_pred EEEEECCCCceeeeecC--CC--EEEEE-ec----CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccc
Confidence 99999988776542211 11 11122 32 22468888999999988887 44443221 1112222 2223
Q ss_pred eCC-CCeEEEEeCCCcEEEEECCCCeEEE--EeecCC----------cceEEEEecCcceeeeccccCCCCccCChHHHH
Q 012799 248 WGG-DGVIYTGSQDCTIKVWETTQGKLIR--ELKGHG----------HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK 314 (456)
Q Consensus 248 ~~~-~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (456)
+.. .+.++-.+.+|.|+-.|+....... .+.... +.-.-+++++.
T Consensus 191 ~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~---------------------- 248 (342)
T PF06433_consen 191 YSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAA---------------------- 248 (342)
T ss_dssp EETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETT----------------------
T ss_pred eECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccc----------------------
Confidence 333 3356667888888888877654221 111000 00111222221
Q ss_pred HHHHhhhhhccCCCCCEEEEEe--------CCC--cEEEEecCCCCCCccccccccccEeEEEECCCCC-EEEEE-ECCC
Q 012799 315 KAALERYNKIKGNAPERLVSGS--------DDF--TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASA-SFDK 382 (456)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~~--------~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~-~~dg 382 (456)
.++|+.-- .|+ .|.++|+.+.+...+ +. -..++.+|+++.+.+ +|++. ..++
T Consensus 249 --------------~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~R-i~-l~~~~~Si~Vsqd~~P~L~~~~~~~~ 312 (342)
T PF06433_consen 249 --------------SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVAR-IP-LEHPIDSIAVSQDDKPLLYALSAGDG 312 (342)
T ss_dssp --------------TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEE-EE-EEEEESEEEEESSSS-EEEEEETTTT
T ss_pred --------------cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEE-Ee-CCCccceEEEccCCCcEEEEEcCCCC
Confidence 11222211 111 366677655443322 32 134588999998765 56554 4579
Q ss_pred cEEEEeCCCCeEEEEEec
Q 012799 383 SIKLWNGTTGKFVAVFRG 400 (456)
Q Consensus 383 ~i~iwd~~~~~~~~~~~~ 400 (456)
.+.+||..+|+++..++.
T Consensus 313 ~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 313 TLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEETTT--EEEEE--
T ss_pred eEEEEeCcCCcEEeehhc
Confidence 999999999999988873
No 347
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.05 E-value=1.6e-06 Score=79.20 Aligned_cols=262 Identities=16% Similarity=0.163 Sum_probs=154.3
Q ss_pred cccEEEEEECCC--CCeEEEEECCCcEEEEeCCCCcc--eeEEecCCCCEEEEEEcC-CCCEEEEEe----CCCeEEEEe
Q 012799 108 TEAVLSVAFSPD--GRQLASGSGDTTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSA-DGKHLVSGS----KAGELQCWD 178 (456)
Q Consensus 108 ~~~V~~~~~s~~--~~~l~~~~~d~~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~s~~----~dg~i~vwd 178 (456)
...+.|+++..+ ...++.|..+|.|-+-......- .....++....++++|++ |.+.||+|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 445667776654 35788999999999988764322 233457888999999998 666777763 245799999
Q ss_pred CCCCC--Ccc--ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC-CCe
Q 012799 179 PQTGK--PSG--NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGV 253 (456)
Q Consensus 179 ~~~~~--~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 253 (456)
+.++- +.. ....+......+++|.. +.+.+++|.....+.++|++..... ...-....+..+.++| .+-
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlr-----d~klvlaGm~sr~~~ifdlRqs~~~-~~svnTk~vqG~tVdp~~~n 209 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLR-----DTKLVLAGMTSRSVHIFDLRQSLDS-VSSVNTKYVQGITVDPFSPN 209 (783)
T ss_pred cccccCCCccccccccccccCcccccccc-----Ccchhhcccccchhhhhhhhhhhhh-hhhhhhhhcccceecCCCCC
Confidence 98872 211 11112334455777775 7788999999999999998732211 1111233556677777 444
Q ss_pred EEEEeCCCcEEEEE-CCCC-eEEEEeecCC----cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCC
Q 012799 254 IYTGSQDCTIKVWE-TTQG-KLIRELKGHG----HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327 (456)
Q Consensus 254 l~~~~~dg~i~iwd-~~~~-~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (456)
.++...||.|.+|| .+.- .++..+.... ..+..++|.|..
T Consensus 210 Y~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr---------------------------------- 255 (783)
T KOG1008|consen 210 YFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR---------------------------------- 255 (783)
T ss_pred ceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC----------------------------------
Confidence 45556699999999 3332 2333332222 247888888862
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCCc----------c---ccc--cccccEeEEEECCCC--CEEEEEECCCcEEEEeCC
Q 012799 328 APERLVSGSDDFTMFLWEPAVSKQPK----------T---RMT--GHQQLVNHVYFSPDG--QWVASASFDKSIKLWNGT 390 (456)
Q Consensus 328 ~~~~l~~~~~dg~i~iwd~~~~~~~~----------~---~~~--~~~~~v~~~~~sp~~--~~l~s~~~dg~i~iwd~~ 390 (456)
.+...+..-..++|+.+|+....... . ... +.-+.|.+..|++.. ....++-..-.+.-+++.
T Consensus 256 tglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~ 335 (783)
T KOG1008|consen 256 TGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVH 335 (783)
T ss_pred cchhhhhccCcceEEEecccccCCcccccccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccch
Confidence 12223444556789999875322110 0 011 112457777777744 224444444444444443
Q ss_pred CCeEEEEEecccccEEEEEeeee
Q 012799 391 TGKFVAVFRGHVGPVYQIRFELI 413 (456)
Q Consensus 391 ~~~~~~~~~~~~~~v~~i~~~~~ 413 (456)
.. .+..|..+.+.+.|...
T Consensus 336 e~----~~pa~s~p~n~L~~s~~ 354 (783)
T KOG1008|consen 336 EE----VIPASSNPYNDLIFSFK 354 (783)
T ss_pred hh----eecccCCCcccchhhhc
Confidence 21 23344557777765543
No 348
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.05 E-value=0.0049 Score=57.02 Aligned_cols=64 Identities=13% Similarity=0.181 Sum_probs=42.9
Q ss_pred EEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG 400 (456)
Q Consensus 332 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 400 (456)
.+....++.+.+.+-..... + ...+++..+++||+|++||.-..+|.+.+.+..-.+.+..+..
T Consensus 193 ~i~~~~g~~i~~i~~~~~~~----i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~ 256 (410)
T PF04841_consen 193 EILLANGETIYIIDENSFKQ----I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT 256 (410)
T ss_pred EEEEecCCEEEEEEcccccc----c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence 44445556666554222111 1 2246799999999999999999999999998665555555543
No 349
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.04 E-value=0.0014 Score=58.73 Aligned_cols=178 Identities=12% Similarity=0.084 Sum_probs=105.6
Q ss_pred eEEEEeCCCCCCccccccCcccceEEEEecccccCC--CCCEEEEEeC----------CCcEEEEECCCC----eEEEEe
Q 012799 173 ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNA--PCRRFVSASK----------DGDARIWDVSLR----KCVICL 236 (456)
Q Consensus 173 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~l~~~~~----------dg~i~iwd~~~~----~~~~~~ 236 (456)
.|++.|..+.+.+..........+.+++........ ...++++|+. .|.|.++++... ..+..+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 577777776665443333334445555543322111 2457776653 288999999884 122222
Q ss_pred --cCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCe-EEEEeec-CCcceEEEEecCcceeeeccccCCCCccCChHH
Q 012799 237 --SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGK-LIRELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312 (456)
Q Consensus 237 --~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (456)
....++|++++-. ++.++++ .++.|.+|++...+ ....-.. ....+.++...
T Consensus 83 ~~~~~~g~V~ai~~~-~~~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---------------------- 138 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGRLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---------------------- 138 (321)
T ss_dssp EEEEESS-EEEEEEE-TTEEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE----------------------
T ss_pred EEEeecCcceEhhhh-CCEEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc----------------------
Confidence 2357889999877 4464444 45889999998877 4333221 22345555544
Q ss_pred HHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccc--ccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799 313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM--TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (456)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 390 (456)
+++++.|.....+.++...........+ ......++++.|-++++.++.+..+|.+.++...
T Consensus 139 ----------------~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 139 ----------------KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp ----------------TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ----------------ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 3468888888888877544322212212 2234568888888777799999999999999765
No 350
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.04 E-value=0.0071 Score=52.74 Aligned_cols=258 Identities=15% Similarity=0.087 Sum_probs=143.6
Q ss_pred CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCCCCccccccCc--ccc--
Q 012799 130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDPQTGKPSGNPLSGH--KKW-- 195 (456)
Q Consensus 130 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~--~~~-- 195 (456)
+.+.|+|.++++.+-.+..-- .-.+..+|+++.+++++ +.-.|.+||..+-.....+.... ...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~--~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF--LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES--SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeeccc--CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 479999999988777665322 33466789999888753 33469999999876543222211 111
Q ss_pred --eEEEEecccccCCCCCEEEEEe--CCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECC-C
Q 012799 196 --ITGISWEPVHLNAPCRRFVSAS--KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT-Q 270 (456)
Q Consensus 196 --v~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~-~ 270 (456)
.....++. ++++++... --..|.|.|+..++.+..+.- .+ ...+--.++..+.+-|.||.+.-..+. .
T Consensus 95 ~~~~~~~ls~-----dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PG-C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~ 167 (342)
T PF06433_consen 95 PYKNMFALSA-----DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PG-CWLIYPSGNRGFSMLCGDGSLLTVTLDAD 167 (342)
T ss_dssp --GGGEEE-T-----TSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TS-EEEEEEEETTEEEEEETTSCEEEEEETST
T ss_pred ccccceEEcc-----CCcEEEEEccCCCCeEEEEECCCCceeeeecC-CC-EEEEEecCCCceEEEecCCceEEEEECCC
Confidence 11122233 666666543 345678888888887766642 11 112211223378899999999999887 4
Q ss_pred CeEEEEeecCCcceEEEEecCcce-eeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCC
Q 012799 271 GKLIRELKGHGHWVNSLALSTEYA-LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS 349 (456)
Q Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 349 (456)
|+...+.. . .|.++.. +... ......+..++.-+.+|.|+-.|+...
T Consensus 168 Gk~~~~~t-------~-~F~~~~dp~f~~------------------------~~~~~~~~~~~F~Sy~G~v~~~dlsg~ 215 (342)
T PF06433_consen 168 GKEAQKST-------K-VFDPDDDPLFEH------------------------PAYSRDGGRLYFVSYEGNVYSADLSGD 215 (342)
T ss_dssp SSEEEEEE-------E-ESSTTTS-B-S--------------------------EEETTTTEEEEEBTTSEEEEEEETTS
T ss_pred CCEeEeec-------c-ccCCCCcccccc------------------------cceECCCCeEEEEecCCEEEEEeccCC
Confidence 55542211 1 2222210 0000 000012345666788888888886554
Q ss_pred CCCc----cccc-------cccccEeEEEECCCCCEEEEEEC---CC-------cEEEEeCCCCeEEEEEecccccEEEE
Q 012799 350 KQPK----TRMT-------GHQQLVNHVYFSPDGQWVASASF---DK-------SIKLWNGTTGKFVAVFRGHVGPVYQI 408 (456)
Q Consensus 350 ~~~~----~~~~-------~~~~~v~~~~~sp~~~~l~s~~~---dg-------~i~iwd~~~~~~~~~~~~~~~~v~~i 408 (456)
.... .... -..+.-.-+++++..+.|++-.. +| .|-++|+.+++.+..+.. ..++.++
T Consensus 216 ~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si 294 (342)
T PF06433_consen 216 SAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSI 294 (342)
T ss_dssp SEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEE
T ss_pred cccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceE
Confidence 3111 0000 00112334678776555554322 22 478889999999998874 3456677
Q ss_pred EeeeeeeecCCCCceeeecccccccceeEecCCC-eEEEe-eCCCceEEC
Q 012799 409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSG-SKDSTLKVT 456 (456)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~s~-s~Dg~v~iW 456 (456)
+.+.|.+ +|++. ..++.+.|+
T Consensus 295 ---------------------------~Vsqd~~P~L~~~~~~~~~l~v~ 317 (342)
T PF06433_consen 295 ---------------------------AVSQDDKPLLYALSAGDGTLDVY 317 (342)
T ss_dssp ---------------------------EEESSSS-EEEEEETTTTEEEEE
T ss_pred ---------------------------EEccCCCcEEEEEcCCCCeEEEE
Confidence 6677765 56554 357777763
No 351
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.04 E-value=0.011 Score=56.60 Aligned_cols=154 Identities=15% Similarity=0.163 Sum_probs=88.8
Q ss_pred CeEEEEECCCcEEEEeCCCCcceeEEecCCCC-EEEEEEcC---CCCEEEEEe------CCCeEEEEeCCCCCCcccccc
Q 012799 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW-VLCIAWSA---DGKHLVSGS------KAGELQCWDPQTGKPSGNPLS 190 (456)
Q Consensus 121 ~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~---~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~ 190 (456)
..++.++.|+.+.-.|..+++.+......... -..+.-+| ++ .++.+. .+|.|..+|.++|+.+.+...
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 45677788999999999999988765421100 01111122 44 455543 268999999999986543221
Q ss_pred Ccccc----------------------e----EEEEecccccCCCCCEEEEEeCC-----C-----------cEEEEECC
Q 012799 191 GHKKW----------------------I----TGISWEPVHLNAPCRRFVSASKD-----G-----------DARIWDVS 228 (456)
Q Consensus 191 ~~~~~----------------------v----~~~~~~~~~~~~~~~~l~~~~~d-----g-----------~i~iwd~~ 228 (456)
..... . ..-.|.+..+++...+++.+..+ + .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 11100 0 00112222222244555555421 2 57778899
Q ss_pred CCeEEEEecCcCccE---------EEEEeCCCC----eEEEEeCCCcEEEEECCCCeEEE
Q 012799 229 LRKCVICLSGHTLAV---------TCVKWGGDG----VIYTGSQDCTIKVWETTQGKLIR 275 (456)
Q Consensus 229 ~~~~~~~~~~~~~~v---------~~~~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~ 275 (456)
+++....++.....+ .-+....+| .++.+..+|.+++.|.++|+.+.
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 999887775422221 222222344 56788999999999999998863
No 352
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.03 E-value=0.0027 Score=57.90 Aligned_cols=205 Identities=15% Similarity=0.174 Sum_probs=102.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC--
Q 012799 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-- 229 (456)
Q Consensus 152 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-- 229 (456)
.|+.+.|.++...|++|...|.|.||.+...+.-. ......-....+.+... .++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~---~~~~~~~~~~~~~~~~~-----------~~~~~~l~di~~r~ 68 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG---NREQPPDLDYNFRRFSL-----------NNSPGKLTDISDRA 68 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE---------------------S--G-----------GGSS-SEEE-GGG-
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC---ccCCCcccCcccccccc-----------cCCCcceEEehhhC
Confidence 58899999999999999999999999887554321 00111111222222111 111222333321
Q ss_pred -------CeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeec--------CCcceEEEEecCcce
Q 012799 230 -------RKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG--------HGHWVNSLALSTEYA 294 (456)
Q Consensus 230 -------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~i~~~~~~~~~~ 294 (456)
-.+...+....++|++++.+.-|.+++|..+|.+.+.|+|....+..-.. ....++++.|.-..
T Consensus 69 ~~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~- 147 (395)
T PF08596_consen 69 PPSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMT- 147 (395)
T ss_dssp -TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-
T ss_pred CcccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEe-
Confidence 12334445568999999999888999999999999999998887766322 22346666655210
Q ss_pred eeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCC-C-CCC----ccccccccccEeEEE-
Q 012799 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV-S-KQP----KTRMTGHQQLVNHVY- 367 (456)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~-~~~----~~~~~~~~~~v~~~~- 367 (456)
.+... ...-.+++|+..|.+.+|.+.- . ... ......+.++|..+.
T Consensus 148 -----~~~D~----------------------ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~ 200 (395)
T PF08596_consen 148 -----LGGDG----------------------YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIP 200 (395)
T ss_dssp ------TTSS----------------------SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEE
T ss_pred -----cCCCc----------------------ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEE
Confidence 00000 0123588999999999998642 1 111 111123445555443
Q ss_pred ECCC-C--------------------CEEEEEECCCcEEEEeCCCCeEEEEEe
Q 012799 368 FSPD-G--------------------QWVASASFDKSIKLWNGTTGKFVAVFR 399 (456)
Q Consensus 368 ~sp~-~--------------------~~l~s~~~dg~i~iwd~~~~~~~~~~~ 399 (456)
++.+ | .+++++ .+..++++...+.+......
T Consensus 201 i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~irv~~~~~~k~~~K~~ 252 (395)
T PF08596_consen 201 INADTGESALATISAMQGLSKGISIPGYVVVV-SESDIRVFKPPKSKGAHKSF 252 (395)
T ss_dssp EETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEEE-TT---EEEEE-
T ss_pred EECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceEEEeCCCCcccceee
Confidence 3211 1 134444 46679999988877655444
No 353
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.00 E-value=0.012 Score=54.97 Aligned_cols=244 Identities=15% Similarity=0.137 Sum_probs=126.5
Q ss_pred ccEEEEEECCCCCeEEEE-ECCC----cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCC-----------
Q 012799 109 EAVLSVAFSPDGRQLASG-SGDT----TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG----------- 172 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~-~~d~----~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg----------- 172 (456)
..+...+++|||+++|.+ +..| .++++|+.+++.+...-... ....+.|.++++.|+....+.
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 345578899999998866 3333 59999999997664321111 122399999988877665433
Q ss_pred eEEEEeCCCCCCccc-cccCcccc--eEEEEecccccCCCCCEEEEEeC---C-CcEEEEECCCC-----eEEEEecCcC
Q 012799 173 ELQCWDPQTGKPSGN-PLSGHKKW--ITGISWEPVHLNAPCRRFVSASK---D-GDARIWDVSLR-----KCVICLSGHT 240 (456)
Q Consensus 173 ~i~vwd~~~~~~~~~-~~~~~~~~--v~~~~~~~~~~~~~~~~l~~~~~---d-g~i~iwd~~~~-----~~~~~~~~~~ 240 (456)
.|..|++.+...... .+...... ...+..++ ++++++.... + ..+++.|+..+ ..........
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-----d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-----DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-----TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-----cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 378888776654311 22222222 45666666 8888775433 2 35788888764 2222222223
Q ss_pred ccEEEEEeCCCCeEEEE---eCCCcEEEEECCCCeE---EEEeecCCc--ceEEEEecCcceeeeccccCCCCccCChHH
Q 012799 241 LAVTCVKWGGDGVIYTG---SQDCTIKVWETTQGKL---IRELKGHGH--WVNSLALSTEYALRTGAFDHTGKQYSSPEE 312 (456)
Q Consensus 241 ~~v~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~---~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (456)
+....+....+..++.. ...+.|...++..... ...+..+.. .+..+....+
T Consensus 278 ~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-------------------- 337 (414)
T PF02897_consen 278 GVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKD-------------------- 337 (414)
T ss_dssp S-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETT--------------------
T ss_pred ceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECC--------------------
Confidence 33333444422222222 2235676777776542 223333332 3444444322
Q ss_pred HHHHHHhhhhhccCCCCCEEEEEeCCC--cEEEEecCCCCCCccccccccccEeEEEECCCCCEEEE--EEC--CCcEEE
Q 012799 313 MKKAALERYNKIKGNAPERLVSGSDDF--TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS--ASF--DKSIKL 386 (456)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s--~~~--dg~i~i 386 (456)
.+++....++ .|+++++..+.........-.+.|..+...++++.+.. .|. -+++.-
T Consensus 338 -----------------~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~ 400 (414)
T PF02897_consen 338 -----------------YLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYR 400 (414)
T ss_dssp -----------------EEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEE
T ss_pred -----------------EEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEE
Confidence 2244444444 57788866122222222222344566665665554332 222 257888
Q ss_pred EeCCCCeEE
Q 012799 387 WNGTTGKFV 395 (456)
Q Consensus 387 wd~~~~~~~ 395 (456)
||+.+++..
T Consensus 401 ~d~~t~~~~ 409 (414)
T PF02897_consen 401 YDLATGELT 409 (414)
T ss_dssp EETTTTCEE
T ss_pred EECCCCCEE
Confidence 999888753
No 354
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.99 E-value=0.0073 Score=52.99 Aligned_cols=208 Identities=17% Similarity=0.179 Sum_probs=120.9
Q ss_pred EEEcCCCC-EEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 012799 156 IAWSADGK-HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI 234 (456)
Q Consensus 156 ~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 234 (456)
..|.++.. ++.+--..+.|.-|+..+++..... +...+.++.... .+..|+++.. .+.+++..++..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d-----~~g~Lv~~~~--g~~~~~~~~~~~~t 99 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALID-----AGGRLIACEH--GVRLLDPDTGGKIT 99 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeec-----CCCeEEEEcc--ccEEEeccCCceeE
Confidence 35666665 4444455678888888877543211 122223322221 3344444433 35666665554422
Q ss_pred EecC-----cCccEEEEEeCCCCeEEEEeCC------------CcEEEEECCCCeEEEEeecCCcceEEEEecCcceeee
Q 012799 235 CLSG-----HTLAVTCVKWGGDGVIYTGSQD------------CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRT 297 (456)
Q Consensus 235 ~~~~-----~~~~v~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 297 (456)
.+.. .....+.+...|+|.++.+... |.++.+|. .+...+.+..+-..-+.++|+|++.
T Consensus 100 ~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~--- 175 (307)
T COG3386 100 LLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGK--- 175 (307)
T ss_pred EeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCC---
Confidence 2211 1245667888899966666554 33444443 4556666655566678899999842
Q ss_pred ccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCC-CC----C-CccccccccccEeEEEECCC
Q 012799 298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV-SK----Q-PKTRMTGHQQLVNHVYFSPD 371 (456)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~----~-~~~~~~~~~~~v~~~~~sp~ 371 (456)
..+++=+..+.|.-|++.. .. . .........+..-.++...+
T Consensus 176 --------------------------------tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDad 223 (307)
T COG3386 176 --------------------------------TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDAD 223 (307)
T ss_pred --------------------------------EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCC
Confidence 2244445557888887652 11 1 11112223455666788888
Q ss_pred CCEEEEEECCC-cEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799 372 GQWVASASFDK-SIKLWNGTTGKFVAVFRGHVGPVYQIRF 410 (456)
Q Consensus 372 ~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 410 (456)
|.+-+++..+| .|.+|+.. |+++..+..+...+++++|
T Consensus 224 G~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 224 GNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred CCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceE
Confidence 88875555554 89999977 9999998877677777744
No 355
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.98 E-value=0.0051 Score=52.00 Aligned_cols=168 Identities=12% Similarity=0.165 Sum_probs=94.1
Q ss_pred ccCcccceEEEEecccccCCC-CCEEEEEeCCCcEEEEECCCCeEEEEecCc-CccEEEEEeCCCCeEEEEe-CCCcEEE
Q 012799 189 LSGHKKWITGISWEPVHLNAP-CRRFVSASKDGDARIWDVSLRKCVICLSGH-TLAVTCVKWGGDGVIYTGS-QDCTIKV 265 (456)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~l~~~~-~dg~i~i 265 (456)
+.+-...+.++.|.| + +..+++....+.|..++. +++.+..+.-. .+..-.+++..++.++... .++.+.+
T Consensus 17 l~g~~~e~SGLTy~p-----d~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 17 LPGILDELSGLTYNP-----DTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYI 90 (248)
T ss_dssp -TT--S-EEEEEEET-----TTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred CCCccCCccccEEcC-----CCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEE
Confidence 445556699999998 5 446666777888888886 47777766433 4678899999888555555 5888999
Q ss_pred EECCCCe------EEEEee-----cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799 266 WETTQGK------LIRELK-----GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (456)
Q Consensus 266 wd~~~~~------~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (456)
+++.... ....+. .++..+..++|.+. .+.++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~------------------------------------~~~L~v 134 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPK------------------------------------TNRLFV 134 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETT------------------------------------TTEEEE
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCC------------------------------------CCEEEE
Confidence 9884321 112221 23445788888876 444666
Q ss_pred EeCCCcEEEEecCC--CCCCc--------cccccccccEeEEEECCC-CCEEEEEECCCcEEEEeCCCCeEEEEEe
Q 012799 335 GSDDFTMFLWEPAV--SKQPK--------TRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFR 399 (456)
Q Consensus 335 ~~~dg~i~iwd~~~--~~~~~--------~~~~~~~~~v~~~~~sp~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 399 (456)
+.+..-..+|.+.. ..... .........+.+++++|. +.+++.......+..+| .+|+.+..+.
T Consensus 135 ~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~ 209 (248)
T PF06977_consen 135 AKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLS 209 (248)
T ss_dssp EEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE
T ss_pred EeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEE
Confidence 66665555665433 11110 001122345788999995 56677777888899999 6788776655
No 356
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.98 E-value=0.0026 Score=58.60 Aligned_cols=201 Identities=20% Similarity=0.229 Sum_probs=115.2
Q ss_pred EEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe---CC-CeEEEEeCCCCCCccccccCcccceEEEEecccccC
Q 012799 132 VRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS---KA-GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207 (456)
Q Consensus 132 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~d-g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 207 (456)
+.+=|.+ +.....+......+..-+|+|+++.++..+ .. ..+.++++++++... .....+.-...+|+|
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~--i~~~~g~~~~P~fsp---- 247 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV--ILNFNGNNGAPAFSP---- 247 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce--eeccCCccCCccCCC----
Confidence 4444443 444555555566778889999998776543 22 359999999887653 222344455667888
Q ss_pred CCCCEEEEEe-CCC--cEEEEECCCCeEEEEecCcCccEEEEEeCCCC--eEEEEeCCCc--EEEEECCCCeEEEEeecC
Q 012799 208 APCRRFVSAS-KDG--DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCT--IKVWETTQGKLIRELKGH 280 (456)
Q Consensus 208 ~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~--i~iwd~~~~~~~~~~~~~ 280 (456)
+|+.++... .|| .|+++|+..+.... +....+.-+.-.|+|+| .+++.+..|. |.++|+..+.. ..+...
T Consensus 248 -DG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~ 324 (425)
T COG0823 248 -DGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFS 324 (425)
T ss_pred -CCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeecc
Confidence 888777654 455 46677877766333 44333333466789999 5555566665 55566665544 323222
Q ss_pred CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC-CCc--EEEEecCCCCCCccccc
Q 012799 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD-DFT--MFLWEPAVSKQPKTRMT 357 (456)
Q Consensus 281 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~ 357 (456)
...-..-.++|+ +++++..+. +|. |.+.|+..+.. ...+
T Consensus 325 ~~~~~~p~~Spd------------------------------------G~~i~~~~~~~g~~~i~~~~~~~~~~-~~~l- 366 (425)
T COG0823 325 GGGNSNPVWSPD------------------------------------GDKIVFESSSGGQWDIDKNDLASGGK-IRIL- 366 (425)
T ss_pred CCCCcCccCCCC------------------------------------CCEEEEEeccCCceeeEEeccCCCCc-EEEc-
Confidence 222224555665 555555543 344 56666544442 2222
Q ss_pred cccccEeEEEECCCCCEEEEEEC
Q 012799 358 GHQQLVNHVYFSPDGQWVASASF 380 (456)
Q Consensus 358 ~~~~~v~~~~~sp~~~~l~s~~~ 380 (456)
.+......-.|.|+|+.+...+.
T Consensus 367 t~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 367 TSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred cccccCCCCCcCCCCceEEEecc
Confidence 22333445578888888665543
No 357
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.93 E-value=0.0038 Score=57.83 Aligned_cols=128 Identities=13% Similarity=0.174 Sum_probs=68.3
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEE
Q 012799 146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW 225 (456)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 225 (456)
+......+..+.++|+|++++++ .||.-.++.....+ ....+.-....|.+ . +.+|+-...+.|.++
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r------~k~~G~g~~~vw~~-----~-n~yAv~~~~~~I~I~ 94 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWR------NKAFGSGLSFVWSS-----R-NRYAVLESSSTIKIY 94 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTE------EEEEEE-SEEEE-T-----S-SEEEEE-TTS-EEEE
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCc------ccccCceeEEEEec-----C-ccEEEEECCCeEEEE
Confidence 33455568899999999999984 56777788732222 12234455677776 3 357777778889996
Q ss_pred ECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCc
Q 012799 226 DVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE 292 (456)
Q Consensus 226 d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 292 (456)
.--+.+....+.. ...+..+-. |.++....++.|.+||..+++.++.+... +|..+.|+++
T Consensus 95 kn~~~~~~k~i~~-~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~ 155 (443)
T PF04053_consen 95 KNFKNEVVKSIKL-PFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDD 155 (443)
T ss_dssp ETTEE-TT------SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TT
T ss_pred EcCccccceEEcC-CcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECC
Confidence 3222222112221 112333332 63444444558999999999999999743 3889999987
No 358
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.93 E-value=0.00032 Score=68.41 Aligned_cols=134 Identities=19% Similarity=0.277 Sum_probs=92.0
Q ss_pred EeCCCcEEEEECCCCeEEEEeecCCcc-eEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEE
Q 012799 257 GSQDCTIKVWETTQGKLIRELKGHGHW-VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (456)
Q Consensus 257 ~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (456)
......|+-.|+..|+.+.....+... |..++ |+..+ ....+...+.|
T Consensus 500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~--p~~K~-----------------------------aqlt~e~tflG 548 (794)
T PF08553_consen 500 PNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIA--PDSKF-----------------------------AQLTNEQTFLG 548 (794)
T ss_pred CCCCCceEEEecCCCcEEEEeecCCCcceeEec--ccccc-----------------------------cccCCCceEEE
Confidence 345678999999999999999876543 44443 33111 00113447888
Q ss_pred eCCCcEEEEecCCCCCCccc----cccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEee
Q 012799 336 SDDFTMFLWEPAVSKQPKTR----MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411 (456)
Q Consensus 336 ~~dg~i~iwd~~~~~~~~~~----~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~ 411 (456)
-.+..+..||+|.....+.. ........+|++-+.+| +||+|+.+|.||+||--..+....+.+-..||..|
T Consensus 549 ls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~i--- 624 (794)
T PF08553_consen 549 LSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGI--- 624 (794)
T ss_pred ECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEE---
Confidence 89999999998875422211 11233457788877777 69999999999999943323334566778899999
Q ss_pred eeeeecCCCCceeeecccccccceeEecCCCeEEEeeC
Q 012799 412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449 (456)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~ 449 (456)
..+.||+||++.+.
T Consensus 625 ------------------------Dvt~DGkwilaTc~ 638 (794)
T PF08553_consen 625 ------------------------DVTADGKWILATCK 638 (794)
T ss_pred ------------------------EecCCCcEEEEeec
Confidence 77999998876554
No 359
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.92 E-value=0.0008 Score=65.77 Aligned_cols=135 Identities=14% Similarity=0.101 Sum_probs=87.9
Q ss_pred CCEEEEE-eCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe--EEEE-e-
Q 012799 162 GKHLVSG-SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK--CVIC-L- 236 (456)
Q Consensus 162 ~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~-~- 236 (456)
.+.|+.. .....|+-.|++.|+.+..--.....+|..++-..-.-.......+.|-.+..+..||.+-.. .+.. .
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444443 345678999999998776332322333555442211000123355677778899999998642 2211 1
Q ss_pred -cCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceee
Q 012799 237 -SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR 296 (456)
Q Consensus 237 -~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 296 (456)
-......+|++-+.+|.+++|+.+|.||+||--..+....+.+-+.+|..|..+.++.++
T Consensus 573 ~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwi 633 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWI 633 (794)
T ss_pred ccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEE
Confidence 123567899999999999999999999999954333444566778999999999986553
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.019 Score=52.80 Aligned_cols=247 Identities=20% Similarity=0.245 Sum_probs=150.0
Q ss_pred cEEEEEECCCCCeEEEE-ECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCCCccc
Q 012799 110 AVLSVAFSPDGRQLASG-SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVS-GSKAGELQCWDPQTGKPSGN 187 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~~~-~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg~i~vwd~~~~~~~~~ 187 (456)
....+...+++..+... .....+...+............-......++.++.++.+.. ...++.|.+.|..+.+....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 45567788888544433 22224555554421111111111144567888888875544 44568999999777665543
Q ss_pred cccCcccceEEEEecccccCCCCCEEEEEeC---CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE-eCCCc
Q 012799 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASK---DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG-SQDCT 262 (456)
Q Consensus 188 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~-~~dg~ 262 (456)
...+. ....+++.| ++..+..+.. ++.+.+.|..+.+.+.....-..+ ..++++|+| .+++. ..++.
T Consensus 112 ~~vG~--~P~~~~~~~-----~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~ 183 (381)
T COG3391 112 IPVGL--GPVGLAVDP-----DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNT 183 (381)
T ss_pred eeecc--CCceEEECC-----CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCe
Confidence 33333 456777777 7766666655 689999999998888775543344 889999999 45444 47889
Q ss_pred EEEEECCCCeEEE-E---eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC-
Q 012799 263 IKVWETTQGKLIR-E---LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD- 337 (456)
Q Consensus 263 i~iwd~~~~~~~~-~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 337 (456)
|.+.|.......+ . .......-..+.+.++ +.++.....
T Consensus 184 v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~------------------------------------g~~~yV~~~~ 227 (381)
T COG3391 184 VSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPD------------------------------------GNRVYVANDG 227 (381)
T ss_pred EEEEeCCCcceeccccccccccCCCCceEEECCC------------------------------------CCEEEEEecc
Confidence 9999977655443 1 0111222344556655 333333322
Q ss_pred --CCcEEEEecCCCCCCccccc-cccccEeEEEECCCCCEEEEEEC-CCcEEEEeCCCCeEEEEEecc
Q 012799 338 --DFTMFLWEPAVSKQPKTRMT-GHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGTTGKFVAVFRGH 401 (456)
Q Consensus 338 --dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~ 401 (456)
++.+...|............ +.. ....+.++|+|+++.+... .+.+.+-|..+..........
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 25788888665443322111 112 4566899999999888744 488999998887777665433
No 361
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.85 E-value=3e-05 Score=44.21 Aligned_cols=36 Identities=61% Similarity=0.947 Sum_probs=32.3
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEe
Q 012799 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd 136 (456)
...+.+|...|.++.|++++.++++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 445668999999999999999999999999999996
No 362
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.82 E-value=0.027 Score=52.20 Aligned_cols=49 Identities=12% Similarity=0.306 Sum_probs=38.1
Q ss_pred cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 012799 131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (456)
Q Consensus 131 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 181 (456)
.|+||+.. |+.+.++.-..+.+.++.|+.+. .|+....||.+++||+..
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCC
Confidence 49999865 66677666555899999999765 455667899999999863
No 363
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.79 E-value=0.004 Score=60.05 Aligned_cols=149 Identities=15% Similarity=0.158 Sum_probs=90.8
Q ss_pred CcccEEEEEECCCCCeEEEEE------CCC--cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC-------
Q 012799 107 HTEAVLSVAFSPDGRQLASGS------GDT--TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA------- 171 (456)
Q Consensus 107 h~~~V~~~~~s~~~~~l~~~~------~d~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------- 171 (456)
....+.+.+++|+|+.+|... .|+ .+.+++.. +.. ..+.. ....+.-.|+|+|+.|++....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEe
Confidence 335788999999999887665 243 45555542 222 33322 2247889999998888776532
Q ss_pred -----CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEE---EECCCCeE-E---EEec-C
Q 012799 172 -----GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI---WDVSLRKC-V---ICLS-G 238 (456)
Q Consensus 172 -----g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i---wd~~~~~~-~---~~~~-~ 238 (456)
+.+.+.+++.+.... .....|..+.|+| ||..++... +|.|++ -....+.. + ..+. .
T Consensus 425 ~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSp-----DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS----RVPGPISELQLSR-----DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred ccCCCceEEEEeccCchhhh----ccCCCcCeEEECC-----CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc
Confidence 233333444433221 3356799999999 999888776 477777 44344431 1 1122 2
Q ss_pred cCccEEEEEeCCCCeEEEEeCCCcEEEEEC
Q 012799 239 HTLAVTCVKWGGDGVIYTGSQDCTIKVWET 268 (456)
Q Consensus 239 ~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~ 268 (456)
-...+..+.|.+++.|+++..++...+|.+
T Consensus 495 l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v 524 (591)
T PRK13616 495 LGDTAVSLDWRTGDSLVVGRSDPEHPVWYV 524 (591)
T ss_pred cCCccccceEecCCEEEEEecCCCCceEEE
Confidence 233468899999996666666554444543
No 364
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.77 E-value=5.5e-05 Score=60.67 Aligned_cols=101 Identities=15% Similarity=0.147 Sum_probs=68.5
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEE-EECCCCCEEEEEECCCcEEEEeCCCCeEEEEEeccc-ccEE
Q 012799 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHV-YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV-GPVY 406 (456)
Q Consensus 329 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~ 406 (456)
+..+++|+.+|.|++|..............-...|.++ .--.++.+.++++.||.|+.|++.-++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 34599999999999998653333222222223333333 223356688999999999999999988888777776 4444
Q ss_pred EEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEe--eCCCceEEC
Q 012799 407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG--SKDSTLKVT 456 (456)
Q Consensus 407 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~--s~Dg~v~iW 456 (456)
.. ..+..+++|+.+ |.|..++.|
T Consensus 150 ~~---------------------------ivv~sd~~i~~a~~S~d~~~k~W 174 (238)
T KOG2444|consen 150 EL---------------------------IVVGSDEFLKIADTSHDRVLKKW 174 (238)
T ss_pred ee---------------------------EEecCCceEEeeccccchhhhhc
Confidence 44 345566777777 778777777
No 365
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.70 E-value=0.0043 Score=44.29 Aligned_cols=95 Identities=19% Similarity=0.292 Sum_probs=61.2
Q ss_pred eCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhcc
Q 012799 248 WGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325 (456)
Q Consensus 248 ~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (456)
+..+| .|++|+.|..|++|+-. +.+.++. ....+.++.-..
T Consensus 10 ~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~---------------------------------- 52 (111)
T PF14783_consen 10 FDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLG---------------------------------- 52 (111)
T ss_pred cCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcC----------------------------------
Confidence 34455 89999999999999754 5666666 344566665443
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECC---CCC-EEEEEECCCcEEE
Q 012799 326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP---DGQ-WVASASFDKSIKL 386 (456)
Q Consensus 326 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp---~~~-~l~s~~~dg~i~i 386 (456)
...++.+..+|+|-+|+- ... ..+ .+. +..+.++++.. ||. -|++|-.+|.|-+
T Consensus 53 ---~~~F~Y~l~NGTVGvY~~-~~R-lWR-iKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 53 ---GGRFAYALANGTVGVYDR-SQR-LWR-IKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ---CCEEEEEecCCEEEEEeC-cce-eee-ecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 345899999999999983 221 222 222 22255554433 333 4888988887753
No 366
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.69 E-value=0.00016 Score=41.05 Aligned_cols=38 Identities=37% Similarity=0.725 Sum_probs=32.8
Q ss_pred CeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 392 GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 392 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
++.+..+..|...|.++ .|.++++++++++.|+.+++|
T Consensus 2 ~~~~~~~~~~~~~i~~~---------------------------~~~~~~~~~~~~~~d~~~~~~ 39 (40)
T smart00320 2 GELLKTLKGHTGPVTSV---------------------------AFSPDGKYLASASDDGTIKLW 39 (40)
T ss_pred cEEEEEEEecCCceeEE---------------------------EECCCCCEEEEecCCCeEEEc
Confidence 45566777788888888 889999999999999999998
No 367
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.65 E-value=0.041 Score=49.17 Aligned_cols=141 Identities=18% Similarity=0.150 Sum_probs=72.2
Q ss_pred EECCCCCeEEEEE-CCC--cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccC
Q 012799 115 AFSPDGRQLASGS-GDT--TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSG 191 (456)
Q Consensus 115 ~~s~~~~~l~~~~-~d~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 191 (456)
+|.+||+.|+.++ .|| .+.+.|+.+++..+...+.........++|+++.++-......+.-.|+++.+... +...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~-vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV-VYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE-EEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEE-EEEC
Confidence 5788897666555 454 56777888776544333222223346677888888776666789999999877532 3444
Q ss_pred cccceEEEEecccccCCCCCEEEEEe----------------------CCCcEEEEECCCCeEEEEecCcCccEEEEEeC
Q 012799 192 HKKWITGISWEPVHLNAPCRRFVSAS----------------------KDGDARIWDVSLRKCVICLSGHTLAVTCVKWG 249 (456)
Q Consensus 192 ~~~~v~~~~~~~~~~~~~~~~l~~~~----------------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 249 (456)
....+-...|.... ++..++-.- ....|.-.|+.+++....+. ....+..+.++
T Consensus 121 p~~~~g~gt~v~n~---d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fs 196 (386)
T PF14583_consen 121 PDDWKGYGTWVANS---DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFS 196 (386)
T ss_dssp -TTEEEEEEEEE-T---TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEE
T ss_pred CcccccccceeeCC---CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccC
Confidence 44555445554321 555544321 12235556777776544443 45667888999
Q ss_pred CCC-eEEEEeCC
Q 012799 250 GDG-VIYTGSQD 260 (456)
Q Consensus 250 ~~~-~l~~~~~d 260 (456)
|.. .+++=+..
T Consensus 197 P~dp~li~fCHE 208 (386)
T PF14583_consen 197 PTDPTLIMFCHE 208 (386)
T ss_dssp TTEEEEEEEEE-
T ss_pred CCCCCEEEEecc
Confidence 866 44444443
No 368
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.61 E-value=0.0097 Score=42.51 Aligned_cols=88 Identities=18% Similarity=0.221 Sum_probs=59.8
Q ss_pred eEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEE
Q 012799 196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIR 275 (456)
Q Consensus 196 v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 275 (456)
|.++++....-. ..+.|++|+.|..|++|+-. ..+..+. ....|++++-...+.++.+..+|+|-+|+-. ..+.
T Consensus 2 V~al~~~d~d~d-g~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGD-GENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLW 75 (111)
T ss_pred eeEEEEEecCCC-CcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCc--ceee
Confidence 566666553211 23689999999999999743 4555554 3567888888877899999999999999863 3444
Q ss_pred EeecCCcceEEEEec
Q 012799 276 ELKGHGHWVNSLALS 290 (456)
Q Consensus 276 ~~~~~~~~i~~~~~~ 290 (456)
.++.... +.++.+.
T Consensus 76 RiKSK~~-~~~~~~~ 89 (111)
T PF14783_consen 76 RIKSKNQ-VTSMAFY 89 (111)
T ss_pred eeccCCC-eEEEEEE
Confidence 4443333 5555543
No 369
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.00032 Score=68.63 Aligned_cols=80 Identities=23% Similarity=0.314 Sum_probs=66.3
Q ss_pred EEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410 (456)
Q Consensus 331 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 410 (456)
.++.|++.|.+...|....-.+...-..-.++|++++|+.+|+.++.|-.+|.|.+||+..++.++.+..|..+.+++-+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF 180 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence 48899999999999976643333333344678999999999999999999999999999999999999988888877733
No 370
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.06 Score=49.50 Aligned_cols=221 Identities=15% Similarity=0.189 Sum_probs=130.6
Q ss_pred EEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCC
Q 012799 132 VRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPC 210 (456)
Q Consensus 132 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 210 (456)
+.+++..+......+..+. ....+...+++..+.... ....+...+........ ....-...-..+...+ .+
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~-~~~~g~~~p~~i~v~~-----~~ 85 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQ-SLSVGGVYPAGVAVNP-----AG 85 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeee-eccCCCccccceeeCC-----CC
Confidence 5555555444444433222 556677888775444433 22245555544211111 0110001223444444 55
Q ss_pred C-EEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeC---CCcEEEEECCCCeEEEEeecCCcceE
Q 012799 211 R-RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ---DCTIKVWETTQGKLIRELKGHGHWVN 285 (456)
Q Consensus 211 ~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~ 285 (456)
. .++....++.|.+.|....+......... ....+++++++ .++++.. ++++.+.|..+++..........+ .
T Consensus 86 ~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~ 163 (381)
T COG3391 86 NKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-T 163 (381)
T ss_pred CeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-c
Confidence 5 55555567899999987777666554322 56778999988 5555544 689999999999888886544444 7
Q ss_pred EEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCE-EEEEeCCCcEEEEecCCCCCCccc---cccccc
Q 012799 286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER-LVSGSDDFTMFLWEPAVSKQPKTR---MTGHQQ 361 (456)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~ 361 (456)
.+++.|+ +.. +++-..++.+.+.|.......... ...-..
T Consensus 164 ~~a~~p~------------------------------------g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~ 207 (381)
T COG3391 164 GVAVDPD------------------------------------GNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGT 207 (381)
T ss_pred eEEECCC------------------------------------CCeEEEEecCCCeEEEEeCCCcceeccccccccccCC
Confidence 7888887 333 444457889999995443222100 111223
Q ss_pred cEeEEEECCCCCEEEEEECC---CcEEEEeCCCCeEEEE
Q 012799 362 LVNHVYFSPDGQWVASASFD---KSIKLWNGTTGKFVAV 397 (456)
Q Consensus 362 ~v~~~~~sp~~~~l~s~~~d---g~i~iwd~~~~~~~~~ 397 (456)
....+.++|+|.++...... +.+...|..++.....
T Consensus 208 ~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 208 GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 34678999999976654433 5899999888777654
No 371
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.57 E-value=0.044 Score=49.22 Aligned_cols=212 Identities=15% Similarity=0.165 Sum_probs=118.8
Q ss_pred cEEEEeCCCCcceeEEecC-CCCEEEE---EEcCC----CCEEEEEeC----------CCeEEEEeCCCC-----CCccc
Q 012799 131 TVRLWDLNTQTPMFKCTGH-KNWVLCI---AWSAD----GKHLVSGSK----------AGELQCWDPQTG-----KPSGN 187 (456)
Q Consensus 131 ~v~vwd~~~~~~~~~~~~~-~~~v~~~---~~~~~----~~~l~s~~~----------dg~i~vwd~~~~-----~~~~~ 187 (456)
.|++.|..+.+.+.++.-. ...+.++ .+..+ ..+|+.|+. .|.|.++++... +....
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5788888777766555422 2234443 33332 467777653 288999999884 22111
Q ss_pred cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe-EEEEe-cCcCccEEEEEeCCCCeEEEEeCCCcEEE
Q 012799 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-CVICL-SGHTLAVTCVKWGGDGVIYTGSQDCTIKV 265 (456)
Q Consensus 188 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~-~~~~~~v~~~~~~~~~~l~~~~~dg~i~i 265 (456)
......++|++++-.. ..++++. ++.|.+|++...+ ....- ......+.++....+ ++++|.....+.+
T Consensus 83 ~~~~~~g~V~ai~~~~-------~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~-~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 83 HSTEVKGPVTAICSFN-------GRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN-YILVGDAMKSVSL 153 (321)
T ss_dssp EEEEESS-EEEEEEET-------TEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT-EEEEEESSSSEEE
T ss_pred EEEeecCcceEhhhhC-------CEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecccc-EEEEEEcccCEEE
Confidence 2234567788887542 3444444 4889999998777 33322 223346777777655 8888988888887
Q ss_pred EECCC-CeEEEEeec--CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEE
Q 012799 266 WETTQ-GKLIRELKG--HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF 342 (456)
Q Consensus 266 wd~~~-~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 342 (456)
+..+. +..+..+.. ....+.++.+-.+ ++.++.+..+|.+.
T Consensus 154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d------------------------------------~~~~i~~D~~gnl~ 197 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQPRWVTAAEFLVD------------------------------------EDTIIVGDKDGNLF 197 (321)
T ss_dssp EEEETTTE-EEEEEEESS-BEEEEEEEE-S------------------------------------SSEEEEEETTSEEE
T ss_pred EEEEccCCEEEEEEecCCCccEEEEEEecC------------------------------------CcEEEEEcCCCeEE
Confidence 74432 332333322 3445666666544 23599999999999
Q ss_pred EEecCCCC------C-Cc-ccc-ccccccEeEE---EECC--CCC------EEEEEECCCcEEEE
Q 012799 343 LWEPAVSK------Q-PK-TRM-TGHQQLVNHV---YFSP--DGQ------WVASASFDKSIKLW 387 (456)
Q Consensus 343 iwd~~~~~------~-~~-~~~-~~~~~~v~~~---~~sp--~~~------~l~s~~~dg~i~iw 387 (456)
++...... . .. ... ......|+++ ++.| .+. .++.++.+|.|...
T Consensus 198 ~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 198 VLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 98865211 1 11 111 1223456776 5555 222 47778888888744
No 372
>PHA02713 hypothetical protein; Provisional
Probab=97.57 E-value=0.0095 Score=57.61 Aligned_cols=73 Identities=10% Similarity=0.110 Sum_probs=42.5
Q ss_pred CCEEEEEeCC------CcEEEEecCC-CC-CCccccccccccEeEEEECCCCCEEEEEECCC--cEEEEeCCCCeEEEEE
Q 012799 329 PERLVSGSDD------FTMFLWEPAV-SK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDK--SIKLWNGTTGKFVAVF 398 (456)
Q Consensus 329 ~~~l~~~~~d------g~i~iwd~~~-~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg--~i~iwd~~~~~~~~~~ 398 (456)
+...+.|+.+ ..+..||+.+ .. .....+.........+++ +|++.++|+.|| .+..||..+.+-...-
T Consensus 464 ~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 464 DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHIC 541 (557)
T ss_pred CEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccchh
Confidence 3345555543 2467899776 32 222223322223333333 788889999888 7888888887765544
Q ss_pred ecccc
Q 012799 399 RGHVG 403 (456)
Q Consensus 399 ~~~~~ 403 (456)
..|..
T Consensus 542 ~~~~~ 546 (557)
T PHA02713 542 HQHSN 546 (557)
T ss_pred hhcCC
Confidence 44543
No 373
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.54 E-value=0.058 Score=48.20 Aligned_cols=218 Identities=17% Similarity=0.194 Sum_probs=99.5
Q ss_pred eCCCCcceeEEecCCCCEEE-----EEEcCCCCEEEEEeC-CC--eEEEEeCCCCCCccccccCcccceEEEEecccccC
Q 012799 136 DLNTQTPMFKCTGHKNWVLC-----IAWSADGKHLVSGSK-AG--ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207 (456)
Q Consensus 136 d~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 207 (456)
|..+|..+..+......-.. =+|.++|+.|+.++. || .+.+.|+.+++......... ........+|
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g-~~~~g~~~s~---- 90 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG-DNTFGGFLSP---- 90 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS--B-TTT-EE-T----
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC-CCccceEEec----
Confidence 55667666666544332222 356678876666554 54 57777888887654222111 2122344455
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeC--CCCeEEEEeC-----------------------CCc
Q 012799 208 APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG--GDGVIYTGSQ-----------------------DCT 262 (456)
Q Consensus 208 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~-----------------------dg~ 262 (456)
+.+.++.......++-.|+.+.+....+......+-...|. .++..+++.. ...
T Consensus 91 -~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~ 169 (386)
T PF14583_consen 91 -DDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCR 169 (386)
T ss_dssp -TSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EE
T ss_pred -CCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCce
Confidence 66777666666788999999887655555555555444443 3443333321 123
Q ss_pred EEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC---CC
Q 012799 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD---DF 339 (456)
Q Consensus 263 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg 339 (456)
|.-.|+.+|+....+. ....+.-+.++|.. +..|+.|-+ +.
T Consensus 170 i~~idl~tG~~~~v~~-~~~wlgH~~fsP~d-----------------------------------p~li~fCHEGpw~~ 213 (386)
T PF14583_consen 170 IFTIDLKTGERKVVFE-DTDWLGHVQFSPTD-----------------------------------PTLIMFCHEGPWDL 213 (386)
T ss_dssp EEEEETTT--EEEEEE-ESS-EEEEEEETTE-----------------------------------EEEEEEEE-S-TTT
T ss_pred EEEEECCCCceeEEEe-cCccccCcccCCCC-----------------------------------CCEEEEeccCCcce
Confidence 5556777766544443 55667777787763 223333322 22
Q ss_pred -cEEEEecCCCCCCccccccc--cccEeEEEECCCCCEEEEEE-----CCCcEEEEeCCCCeEE
Q 012799 340 -TMFLWEPAVSKQPKTRMTGH--QQLVNHVYFSPDGQWVASAS-----FDKSIKLWNGTTGKFV 395 (456)
Q Consensus 340 -~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~s~~-----~dg~i~iwd~~~~~~~ 395 (456)
.-+||-++........+..+ ...+..=-|.|||..|.--+ .+..|.-+|..+++..
T Consensus 214 Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~ 277 (386)
T PF14583_consen 214 VDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR 277 (386)
T ss_dssp SS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred eceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence 13556554433333333222 23345557999998766522 2446777788877553
No 374
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00077 Score=62.20 Aligned_cols=93 Identities=17% Similarity=0.268 Sum_probs=76.7
Q ss_pred ccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEE-EEEeCCCC-eEEEEeCCCcEEEEECCC
Q 012799 193 KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT-CVKWGGDG-VIYTGSQDCTIKVWETTQ 270 (456)
Q Consensus 193 ~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~-~l~~~~~dg~i~iwd~~~ 270 (456)
...+.-+.|+| .-..+|.+..+|.+.+..++ .+.+.++.-+...++ +++|.||| .+++|-.||+|++.|..+
T Consensus 20 ~~~i~~~ewnP-----~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 20 PINIKRIEWNP-----KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred ccceEEEEEcC-----ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence 44577889999 77899999999999999988 777888876777777 99999999 889999999999999999
Q ss_pred CeEEEEee-cCCcceEEEEecC
Q 012799 271 GKLIRELK-GHGHWVNSLALST 291 (456)
Q Consensus 271 ~~~~~~~~-~~~~~i~~~~~~~ 291 (456)
+..+.... .....|.++.|++
T Consensus 94 ~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 94 GGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CCceeccccccccchheeeccc
Confidence 98777632 2345677777764
No 375
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.0028 Score=57.51 Aligned_cols=139 Identities=17% Similarity=0.330 Sum_probs=95.6
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE
Q 012799 253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (456)
Q Consensus 253 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 332 (456)
++..+.....++-.|++.|+.+.+...+.. |+-+.+.|+.... + .....-
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~---------Q--------------------l~~e~T 397 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFA---------Q--------------------LTSEQT 397 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchh---------c--------------------cccccc
Confidence 555666677899999999999999886655 7777777764321 0 012335
Q ss_pred EEEeCCCcEEEEecCCCCC-Ccccccccc----ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEE
Q 012799 333 VSGSDDFTMFLWEPAVSKQ-PKTRMTGHQ----QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ 407 (456)
Q Consensus 333 ~~~~~dg~i~iwd~~~~~~-~~~~~~~~~----~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 407 (456)
+.|-.+..|.-||++-... .+....+|+ ....|.+-..+| +||+||.+|.|++||--..+.-..+.+...+|..
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~h 476 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKH 476 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceee
Confidence 6788899999999885544 222222332 234555555555 7999999999999996333334567788889998
Q ss_pred EEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC
Q 012799 408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449 (456)
Q Consensus 408 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~ 449 (456)
+ .-+.||++|+..+.
T Consensus 477 V---------------------------dvtadGKwil~Tc~ 491 (644)
T KOG2395|consen 477 V---------------------------DVTADGKWILATCK 491 (644)
T ss_pred E---------------------------EeeccCcEEEEecc
Confidence 8 77889988775543
No 376
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.41 E-value=0.00026 Score=56.86 Aligned_cols=109 Identities=14% Similarity=0.125 Sum_probs=63.7
Q ss_pred EEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEE-EecCcCccE
Q 012799 165 LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI-CLSGHTLAV 243 (456)
Q Consensus 165 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v 243 (456)
+..-+.||.|+-++++.-+...+...-+...-.-+. -+..+++|+.+|.|.+|......... ....-...|
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~--------~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i 104 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVT--------ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESI 104 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeecc--------cCceEEeecccceEEEecCCccchHHHhhhcccccc
Confidence 444466778877777654433222222222211111 34579999999999999876221111 111122334
Q ss_pred EEEEeCCC-C-eEEEEeCCCcEEEEECCCCeEEEEeecCC
Q 012799 244 TCVKWGGD-G-VIYTGSQDCTIKVWETTQGKLIRELKGHG 281 (456)
Q Consensus 244 ~~~~~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 281 (456)
.++....+ + ..++++.||.|+.|+..-++.+.....|.
T Consensus 105 ~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 105 DLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred eeccccccccceeEEeccCCceeeeccccCceeeeecccc
Confidence 44333333 3 78899999999999998887776665555
No 377
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.0021 Score=58.19 Aligned_cols=148 Identities=16% Similarity=0.156 Sum_probs=97.1
Q ss_pred CCCeEE-EEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCE-------EEEEeCCCeEEEEeCCCCCC-ccccc
Q 012799 119 DGRQLA-SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH-------LVSGSKAGELQCWDPQTGKP-SGNPL 189 (456)
Q Consensus 119 ~~~~l~-~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------l~s~~~dg~i~vwd~~~~~~-~~~~~ 189 (456)
+.++|+ ++.....++--|++.|+.+..+..+.. |.-+.+.|+.+. -+.|-.|..|.-||.+-... .....
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 444444 444556788889999999999987776 777888886431 24456678899999874322 11011
Q ss_pred cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECC
Q 012799 190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT 269 (456)
Q Consensus 190 ~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~ 269 (456)
.+|. ..+.-.|+..... ...++++|+.+|.|++||--..+....+.+-..+|..+..+.+|..+.|..+..+.+.++.
T Consensus 423 q~kq-y~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 423 QSKQ-YSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred eccc-cccccccceeeec-CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 1111 1111122221111 3458999999999999997444444556778899999999999966667777888887754
No 378
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.37 E-value=0.041 Score=53.31 Aligned_cols=124 Identities=15% Similarity=0.081 Sum_probs=69.4
Q ss_pred CCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe------CCC--eEEEEeCCCCCCccccccCcccceEEEE
Q 012799 129 DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS------KAG--ELQCWDPQTGKPSGNPLSGHKKWITGIS 200 (456)
Q Consensus 129 d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~------~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 200 (456)
+|.+.-.+-..-.++.-..+....+...+++|+|+.++... .|+ .|.+++. +........+ .......
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~~~lt~g--~~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVAVQVLEG--HSLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcceeeecC--CCCCCce
Confidence 56555443222222222223334678999999999887765 244 4555554 2222222232 2377888
Q ss_pred ecccccCCCCCEEEEEeCC------------CcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEE
Q 012799 201 WEPVHLNAPCRRFVSASKD------------GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKV 265 (456)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i 265 (456)
|+| +|..+++.... +.+.+.++..+.... .....|..+.|+||| .++... +|.|.+
T Consensus 404 Wsp-----DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 404 WSL-----DADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred ECC-----CCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 888 77766666432 233333444333222 235679999999999 554433 477766
No 379
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.32 E-value=0.05 Score=52.66 Aligned_cols=228 Identities=17% Similarity=0.200 Sum_probs=115.5
Q ss_pred CCCCCeEEEEECC------CcEEEEeCCCCccee--EEecCCCCEEEEEEcCCCCEEEEEeCC-C-----eEEEEeCCCC
Q 012799 117 SPDGRQLASGSGD------TTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSADGKHLVSGSKA-G-----ELQCWDPQTG 182 (456)
Q Consensus 117 s~~~~~l~~~~~d------~~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~d-g-----~i~vwd~~~~ 182 (456)
+..+.+++.|+.+ ..+..+|..++.-.. .+. ....-.+++.. ++...++||.| | ++..||..++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC
Confidence 3345667777766 367788887663222 222 22223344443 56788889888 3 5788888877
Q ss_pred CCccc-cccCcccceEEEEecccccCCCCCEEEEEeCCCc-----EEEEECCCCeEEEEecCcCccEEEEEe-CCCC-eE
Q 012799 183 KPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD-----ARIWDVSLRKCVICLSGHTLAVTCVKW-GGDG-VI 254 (456)
Q Consensus 183 ~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~-~l 254 (456)
+-... .+............ +|...++||.||. +-.||..+.+-...-.-.. ....... .-+| ..
T Consensus 360 ~W~~~a~M~~~R~~~~v~~l-------~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iY 431 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVAVL-------DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLY 431 (571)
T ss_pred ceeccCCccCccccceeEEE-------CCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEE
Confidence 63221 11111111111111 6788999999874 6677776554222111111 1111111 1245 55
Q ss_pred EEEeCCC------cEEEEECCCCeEEEEe--ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccC
Q 012799 255 YTGSQDC------TIKVWETTQGKLIREL--KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326 (456)
Q Consensus 255 ~~~~~dg------~i~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (456)
++|+.++ ++..||..+++-...- ........ ++.-
T Consensus 432 i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~------------------------------------ 474 (571)
T KOG4441|consen 432 IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL------------------------------------ 474 (571)
T ss_pred EEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEE------------------------------------
Confidence 5666444 4677887776432221 11111111 2211
Q ss_pred CCCCEEEEEeCCC-----cEEEEecCCCCCCccc-cccccccEeEEEECCCCCEEEEEECCC-----cEEEEeCCCCeE
Q 012799 327 NAPERLVSGSDDF-----TMFLWEPAVSKQPKTR-MTGHQQLVNHVYFSPDGQWVASASFDK-----SIKLWNGTTGKF 394 (456)
Q Consensus 327 ~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~s~~~dg-----~i~iwd~~~~~~ 394 (456)
++..++.|+.|+ ++..||..+.+..... +......+..+.+ +++..+.|+.|| +|..||..+.+.
T Consensus 475 -~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 475 -NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred -CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCce
Confidence 134466666665 3777887665533222 2222233333333 567788888776 577777665543
No 380
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.006 Score=60.22 Aligned_cols=101 Identities=16% Similarity=0.234 Sum_probs=75.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcC
Q 012799 161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT 240 (456)
Q Consensus 161 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 240 (456)
.+..++.|+..|.+-..|+...-.....-....++|++++|+. +|..++.|-.+|.|.+||+..++.++.+..|.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-----dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ 172 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-----DGSLLLAGLGDGHVTVWDMHRAKILKVITEHG 172 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-----CCceeccccCCCcEEEEEccCCcceeeeeecC
Confidence 5567888999999998888654221111223457899999988 99999999999999999999999998887777
Q ss_pred ccEEEEEe---CCCC-eEEEEeCCCcEEEEEC
Q 012799 241 LAVTCVKW---GGDG-VIYTGSQDCTIKVWET 268 (456)
Q Consensus 241 ~~v~~~~~---~~~~-~l~~~~~dg~i~iwd~ 268 (456)
.+.+.+-+ ..++ .++++...|. +|.+
T Consensus 173 ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 66555443 3444 6888887776 4544
No 381
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.25 E-value=0.17 Score=47.33 Aligned_cols=112 Identities=19% Similarity=0.292 Sum_probs=67.6
Q ss_pred EEEEEEcCCCCEEEEE-eCCC----eEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC-------
Q 012799 153 VLCIAWSADGKHLVSG-SKAG----ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG------- 220 (456)
Q Consensus 153 v~~~~~~~~~~~l~s~-~~dg----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg------- 220 (456)
+....++|+|+++|.+ +..| .++++|+++|+.+...+.. .....+.|.+ +++.|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~-----d~~~~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSD-----DGKGFFYTRFDEDQRTSDS 198 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECT-----TSSEEEEEECSTTTSS-CC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeC-----CCCEEEEEEeCcccccccC
Confidence 4467899999998865 3334 5999999999654322211 1122388888 777777665433
Q ss_pred ----cEEEEECCCCeE--EEEecCcCc--cEEEEEeCCCC-eEE-EEeCC---CcEEEEECCCC
Q 012799 221 ----DARIWDVSLRKC--VICLSGHTL--AVTCVKWGGDG-VIY-TGSQD---CTIKVWETTQG 271 (456)
Q Consensus 221 ----~i~iwd~~~~~~--~~~~~~~~~--~v~~~~~~~~~-~l~-~~~~d---g~i~iwd~~~~ 271 (456)
.|+.|.+.+... ...+..... ....+..++++ .++ ..... ..+.+.|+..+
T Consensus 199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 378888876532 233433332 26678889988 443 33332 34788888764
No 382
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.20 E-value=0.0016 Score=38.62 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=29.8
Q ss_pred cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcc
Q 012799 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP 142 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~ 142 (456)
...|.+++|+|..++||.|..+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 4443
No 383
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.10 E-value=0.084 Score=51.14 Aligned_cols=104 Identities=18% Similarity=0.273 Sum_probs=56.6
Q ss_pred CCCEEEEEeCCC------eEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC-C-----cEEEEECC
Q 012799 161 DGKHLVSGSKAG------ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-G-----DARIWDVS 228 (456)
Q Consensus 161 ~~~~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-g-----~i~iwd~~ 228 (456)
.+.+++.||.++ .+..||..++.............-.+++.. ++..+++||.| | .+..||..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~------~~~lYv~GG~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL------NGKLYVVGGYDSGSDRLSSVERYDPR 357 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE------CCEEEEEccccCCCcccceEEEecCC
Confidence 456677777763 588889887743221111122223333332 55788899988 3 57778877
Q ss_pred CCeEEE--EecCcCccEEEEEeCCCC-eEEEEeCCCc-----EEEEECCCCe
Q 012799 229 LRKCVI--CLSGHTLAVTCVKWGGDG-VIYTGSQDCT-----IKVWETTQGK 272 (456)
Q Consensus 229 ~~~~~~--~~~~~~~~v~~~~~~~~~-~l~~~~~dg~-----i~iwd~~~~~ 272 (456)
..+-.. .+....... .++.. +| ..++|+.||. +-.||..+.+
T Consensus 358 ~~~W~~~a~M~~~R~~~-~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~ 407 (571)
T KOG4441|consen 358 TNQWTPVAPMNTKRSDF-GVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNK 407 (571)
T ss_pred CCceeccCCccCccccc-eeEEE-CCEEEEEeccccccccccEEEecCCCCc
Confidence 665222 111111111 12222 44 7777888864 6667776643
No 384
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.08 E-value=0.0024 Score=37.88 Aligned_cols=35 Identities=11% Similarity=0.140 Sum_probs=30.4
Q ss_pred cccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEE
Q 012799 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395 (456)
Q Consensus 360 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~ 395 (456)
...|..++|+|...+||.|+.+|.|.++.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 346999999999999999999999999998 55543
No 385
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.06 E-value=0.19 Score=50.32 Aligned_cols=113 Identities=17% Similarity=0.161 Sum_probs=71.2
Q ss_pred CCeEEEEECCCcEEEEeCCCCcceeEEecCCCC--------EEEEEEc----------------CCCCEEEEEeCCCeEE
Q 012799 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW--------VLCIAWS----------------ADGKHLVSGSKAGELQ 175 (456)
Q Consensus 120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~--------v~~~~~~----------------~~~~~l~s~~~dg~i~ 175 (456)
+..|..++.++.|.-.|..+|+.+.++...... ...+++. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777778889999999999988776532211 1122222 1345788899999999
Q ss_pred EEeCCCCCCccccccCcccce-------------EEEEecccccCCCCCEEEEEeC----------CCcEEEEECCCCeE
Q 012799 176 CWDPQTGKPSGNPLSGHKKWI-------------TGISWEPVHLNAPCRRFVSASK----------DGDARIWDVSLRKC 232 (456)
Q Consensus 176 vwd~~~~~~~~~~~~~~~~~v-------------~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~ 232 (456)
-.|.++|+..... +..+.+ ..+.-.|.- .+..+++|+. +|.|+-+|.++++.
T Consensus 274 ALDA~TGk~~W~f--g~~G~vdl~~~~g~~~~g~~~~ts~P~V---~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 274 ALDADTGKLCEDF--GNNGTVDLTAGMGTTPPGYYYPTSPPLV---AGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred EEECCCCCEEEEe--cCCCceeeecccCcCCCcccccccCCEE---ECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence 9999999876421 111111 011111211 2345666643 68899999999998
Q ss_pred EEEec
Q 012799 233 VICLS 237 (456)
Q Consensus 233 ~~~~~ 237 (456)
+..+.
T Consensus 349 ~W~~~ 353 (764)
T TIGR03074 349 VWAWD 353 (764)
T ss_pred eeEEe
Confidence 87764
No 386
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.94 E-value=0.2 Score=42.56 Aligned_cols=162 Identities=13% Similarity=0.170 Sum_probs=108.7
Q ss_pred ccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEec-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 012799 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (456)
Q Consensus 104 l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 182 (456)
+.|-...|.++.|+|+.+.|++......-.|+=..+|+.+.++.- .-.....+.+..++++.++--+++.+.++.+..+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 445566699999999999888888777777776677888877651 1233456788888888888888888888877655
Q ss_pred CCccc---------cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEE---EecCc-------CccE
Q 012799 183 KPSGN---------PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI---CLSGH-------TLAV 243 (456)
Q Consensus 183 ~~~~~---------~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~-------~~~v 243 (456)
..... ...........++|.| ....|+.+-+..-+.||......... ....+ -..|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-----~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDP-----VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCC-----CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 32110 1111255678999999 77788888888878887765332111 11111 2346
Q ss_pred EEEEeCCCC--eEEEEeCCCcEEEEECCC
Q 012799 244 TCVKWGGDG--VIYTGSQDCTIKVWETTQ 270 (456)
Q Consensus 244 ~~~~~~~~~--~l~~~~~dg~i~iwd~~~ 270 (456)
.++.|++.. .++-+..++.+.-.|...
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecCC
Confidence 777788643 666677777777777653
No 387
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.87 E-value=0.23 Score=43.84 Aligned_cols=172 Identities=16% Similarity=0.141 Sum_probs=101.7
Q ss_pred EEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe----c-CCCCEEEEEEcCCCCEEEEEeC------C---CeEEE
Q 012799 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT----G-HKNWVLCIAWSADGKHLVSGSK------A---GELQC 176 (456)
Q Consensus 111 V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~----~-~~~~v~~~~~~~~~~~l~s~~~------d---g~i~v 176 (456)
+.++..-..+..|+++. . -+.+++.+++.....+. + .....+.+...|+|.+.++... + ..-.+
T Consensus 68 ~~~~~~~d~~g~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~l 145 (307)
T COG3386 68 FSSGALIDAGGRLIACE-H-GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSL 145 (307)
T ss_pred cccceeecCCCeEEEEc-c-ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceE
Confidence 34444443444455543 3 36777776555422222 1 1245667888889886665333 0 01234
Q ss_pred EeCC-CCCCccccccCcccceEEEEecccccCCCCCEEEEEeC-CCcEEEEECCC--C----e-EEEEecCcCccEEEEE
Q 012799 177 WDPQ-TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSL--R----K-CVICLSGHTLAVTCVK 247 (456)
Q Consensus 177 wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~--~----~-~~~~~~~~~~~v~~~~ 247 (456)
|.+. .+.... ....+-..-+.++|+| +++.+..+.. .+.|.-|++.. + + ....+....+..-.++
T Consensus 146 yr~~p~g~~~~-l~~~~~~~~NGla~Sp-----Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~ 219 (307)
T COG3386 146 YRVDPDGGVVR-LLDDDLTIPNGLAFSP-----DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMA 219 (307)
T ss_pred EEEcCCCCEEE-eecCcEEecCceEECC-----CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceE
Confidence 4444 333332 4455555667899999 8877777765 47788887752 1 1 1222223445566777
Q ss_pred eCCCCeEEEEe-CCC-cEEEEECCCCeEEEEeecCCcceEEEEecC
Q 012799 248 WGGDGVIYTGS-QDC-TIKVWETTQGKLIRELKGHGHWVNSLALST 291 (456)
Q Consensus 248 ~~~~~~l~~~~-~dg-~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~ 291 (456)
...+|.+.++. .+| .|..|+.. ++.+..+..+...+++++|--
T Consensus 220 vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 220 VDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred EeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence 88888666443 443 89999988 899988887767777777754
No 388
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.87 E-value=0.4 Score=48.05 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=72.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCccccccCccc-------ceEEEEeccc-----------ccCCCCCEEEEEeCCCcEE
Q 012799 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKK-------WITGISWEPV-----------HLNAPCRRFVSASKDGDAR 223 (456)
Q Consensus 162 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-------~v~~~~~~~~-----------~~~~~~~~l~~~~~dg~i~ 223 (456)
+..++.++.++.|.-.|..+|+.+.+....... ....+.+... .....+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557777888888999999888865432111110 0112222210 0011445888899999999
Q ss_pred EEECCCCeEEEEecCcCccE-------------EEEEeCC---CCeEEEEeC----------CCcEEEEECCCCeEEEEe
Q 012799 224 IWDVSLRKCVICLSGHTLAV-------------TCVKWGG---DGVIYTGSQ----------DCTIKVWETTQGKLIREL 277 (456)
Q Consensus 224 iwd~~~~~~~~~~~~~~~~v-------------~~~~~~~---~~~l~~~~~----------dg~i~iwd~~~~~~~~~~ 277 (456)
-.|.++++.+..+.. .+.+ ..+.-.| ++.+++|+. +|.|+-+|.++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876532 1111 0111122 456666643 688999999999998877
Q ss_pred e
Q 012799 278 K 278 (456)
Q Consensus 278 ~ 278 (456)
.
T Consensus 353 ~ 353 (764)
T TIGR03074 353 D 353 (764)
T ss_pred e
Confidence 5
No 389
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.86 E-value=0.2 Score=42.36 Aligned_cols=62 Identities=26% Similarity=0.354 Sum_probs=47.4
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEEC-----CCcEEEEeCCCC-cceeEEecCCCCEEEEEEcCCCCEEEEEe
Q 012799 102 ATIAGHTEAVLSVAFSPDGRQLASGSG-----DTTVRLWDLNTQ-TPMFKCTGHKNWVLCIAWSADGKHLVSGS 169 (456)
Q Consensus 102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~-----d~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 169 (456)
+.+.||. .|||||.+|...-. .|.|-|||...+ +.+..+..|.-....+.|.+||+.++.+.
T Consensus 113 RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 113 RHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 4455663 69999998887543 368999998754 44566778888888999999999988764
No 390
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.85 E-value=0.2 Score=41.02 Aligned_cols=46 Identities=13% Similarity=0.154 Sum_probs=40.6
Q ss_pred EEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799 365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410 (456)
Q Consensus 365 ~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 410 (456)
.++...+|++.++.-..|+|...|..+|+.+..++-....|++++|
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccF 261 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCF 261 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence 4566778998888888999999999999999999999999999966
No 391
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.77 E-value=0.28 Score=41.53 Aligned_cols=141 Identities=18% Similarity=0.216 Sum_probs=83.0
Q ss_pred EEEECCCCC-eEEEEECCC-cEEEEeCCCCcceeEEecCCCC--EEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCC
Q 012799 113 SVAFSPDGR-QLASGSGDT-TVRLWDLNTQTPMFKCTGHKNW--VLCIAWSADGKHLVSGSKA-----GELQCWDPQTGK 183 (456)
Q Consensus 113 ~~~~s~~~~-~l~~~~~d~-~v~vwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~ 183 (456)
.++|+|... -++.+-.-| ...++|.+..+...++...++. --.=.|+|||.+|...-.| |.|-|||.+.+-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 477888543 455554444 3668888877666554322211 1123689999999876443 679999998654
Q ss_pred CccccccCcccceEEEEecccccCCCCCEEEEEeC------------------CCcEEEEECCCCeEEEE--ec--CcCc
Q 012799 184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK------------------DGDARIWDVSLRKCVIC--LS--GHTL 241 (456)
Q Consensus 184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~------------------dg~i~iwd~~~~~~~~~--~~--~~~~ 241 (456)
...-.+..|.-.-..+.+.+ ||+.++.+.. .-++.+.|..++..+.+ +. .+..
T Consensus 152 qrvgE~~t~GiGpHev~lm~-----DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~l 226 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMA-----DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQL 226 (366)
T ss_pred ceecccccCCcCcceeEEec-----CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhc
Confidence 33334555665666777777 8888887643 11233334334433322 11 2345
Q ss_pred cEEEEEeCCCCeEEEEe
Q 012799 242 AVTCVKWGGDGVIYTGS 258 (456)
Q Consensus 242 ~v~~~~~~~~~~l~~~~ 258 (456)
.|..++..++|.++.|+
T Consensus 227 SiRHld~g~dgtvwfgc 243 (366)
T COG3490 227 SIRHLDIGRDGTVWFGC 243 (366)
T ss_pred ceeeeeeCCCCcEEEEE
Confidence 57777777777555544
No 392
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.66 E-value=0.35 Score=41.24 Aligned_cols=117 Identities=12% Similarity=0.121 Sum_probs=79.2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEEC
Q 012799 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV 227 (456)
Q Consensus 148 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 227 (456)
+-...+.++.|+|+.+.|++......-.|+=..+|+.+.++....-.....+.|.. ++.+.++--.++.+.++.+
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-----~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-----GNQFVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-----CCEEEEEehhcceEEEEEE
Confidence 44555999999999999998888887777777777766544333333445566654 5666666666888888877
Q ss_pred CCCeEEEEe----------cCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECC
Q 012799 228 SLRKCVICL----------SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT 269 (456)
Q Consensus 228 ~~~~~~~~~----------~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~ 269 (456)
.....+... ...+.....++|+|.. .|+.+-...-+.||...
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 654322111 1125567889999977 77777777777777655
No 393
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.63 E-value=0.55 Score=43.16 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=39.9
Q ss_pred cccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccc
Q 012799 356 MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403 (456)
Q Consensus 356 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 403 (456)
+......+.+++.+|++++.|+...=|+|.++|+.++..++.++|-.+
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd 350 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD 350 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence 344455688999999999988887789999999999999888887554
No 394
>PRK10115 protease 2; Provisional
Probab=96.60 E-value=0.92 Score=45.39 Aligned_cols=112 Identities=12% Similarity=0.058 Sum_probs=66.3
Q ss_pred ccEEEEEECCCCCeEEEEECC-----CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC------CeEEEE
Q 012799 109 EAVLSVAFSPDGRQLASGSGD-----TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA------GELQCW 177 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~~d-----~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------g~i~vw 177 (456)
-.+..+.++|||++||.+... ..|++-|+.++..+........ ..++|.+|++.|+....+ ..|..+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 457788999999998876432 3688999988764433222222 569999999877665442 357888
Q ss_pred eCCCCCCccc-cccCcccceE-EEEecccccCCCCCEEEEEeC---CCcEEEEEC
Q 012799 178 DPQTGKPSGN-PLSGHKKWIT-GISWEPVHLNAPCRRFVSASK---DGDARIWDV 227 (456)
Q Consensus 178 d~~~~~~~~~-~~~~~~~~v~-~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~ 227 (456)
++.++..... .+........ ....+. ++.+++..+. ++.+.+++.
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~-----d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTT-----SKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcC-----CCCEEEEEEECCccccEEEEEC
Confidence 8887732211 2222222222 122221 5566554433 457888884
No 395
>PHA02713 hypothetical protein; Provisional
Probab=96.58 E-value=0.12 Score=50.22 Aligned_cols=63 Identities=13% Similarity=0.225 Sum_probs=35.4
Q ss_pred CCCeEEEEECC------CcEEEEeCCCCcce--eEEecCCCCEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCC
Q 012799 119 DGRQLASGSGD------TTVRLWDLNTQTPM--FKCTGHKNWVLCIAWSADGKHLVSGSKAG-----ELQCWDPQTGK 183 (456)
Q Consensus 119 ~~~~l~~~~~d------~~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~ 183 (456)
++.+++.||.+ ..+..||..++.-. ..+.........+. -+|+..+.||.++ .+..||..+++
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 56777777753 24777887665311 11111111222222 2677778888764 48889988764
No 396
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.42 E-value=0.11 Score=50.07 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=77.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC---
Q 012799 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS--- 228 (456)
Q Consensus 152 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--- 228 (456)
.+.-+.-+.-++..++-+....+.|||.+.+...........+.|.++.|.... +++.+++.|....|.+|.-.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~---d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTP---DGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecC---CCCEEEEEEcCcEEEEEEccchh
Confidence 344444444444444444445799999998875543333557889999998744 88999999999999998531
Q ss_pred ------CCeEEEEe--cCcC-ccEEEEEeCCCCeEEEEeCCCcEEEEECC
Q 012799 229 ------LRKCVICL--SGHT-LAVTCVKWGGDGVIYTGSQDCTIKVWETT 269 (456)
Q Consensus 229 ------~~~~~~~~--~~~~-~~v~~~~~~~~~~l~~~~~dg~i~iwd~~ 269 (456)
+...+..+ ..+. .+|.+..|.++|.+++|+. +.+.++|-.
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~dk~ 156 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG-NQLFVFDKW 156 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC-CEEEEECCC
Confidence 11223222 2333 6799999999998887765 468888753
No 397
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.39 E-value=0.6 Score=40.84 Aligned_cols=122 Identities=21% Similarity=0.199 Sum_probs=71.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEE-----
Q 012799 161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC----- 235 (456)
Q Consensus 161 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----- 235 (456)
.++.|+.|+.+| +.+++........ ...+...|..+...| +-+.+++-+ |+.++++++........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~--~i~~~~~I~ql~vl~-----~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPT--RILKLSSITQLSVLP-----ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccce--eEeecceEEEEEEec-----ccCEEEEEc-CCccEEEEchhhcccccccccc
Confidence 678899999998 8999883322222 112233388888877 445555554 49999999875443331
Q ss_pred ---------ecCcCccEEEEE--eCCCC-eEEEEeCCCcEEEEECCCC-----eEEEEeecCCcceEEEEecCc
Q 012799 236 ---------LSGHTLAVTCVK--WGGDG-VIYTGSQDCTIKVWETTQG-----KLIRELKGHGHWVNSLALSTE 292 (456)
Q Consensus 236 ---------~~~~~~~v~~~~--~~~~~-~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~i~~~~~~~~ 292 (456)
.......+...+ -...+ ..++......|.+|..... +..+++. -...+..++|..+
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~ 149 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGN 149 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCC
Confidence 111223344444 12233 4444555558888876553 3455555 3366777777754
No 398
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.27 E-value=1 Score=42.37 Aligned_cols=149 Identities=13% Similarity=0.120 Sum_probs=85.6
Q ss_pred CCcccEEEEEECCCC----CeEEEEECCCcEEEEeCCC-----CcceeEEecC-----CCCEEEEEEcCCCCEEEEEeCC
Q 012799 106 GHTEAVLSVAFSPDG----RQLASGSGDTTVRLWDLNT-----QTPMFKCTGH-----KNWVLCIAWSADGKHLVSGSKA 171 (456)
Q Consensus 106 ~h~~~V~~~~~s~~~----~~l~~~~~d~~v~vwd~~~-----~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~~~d 171 (456)
|.-+.|..++|.|-+ ..|++......|.||.+.. ++.+..-..+ .--...+.|+|....|++-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 455679999999953 2344445677999998752 2222221111 1123457899998888876665
Q ss_pred CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC-CCcEEEEECCCCeEEE----EecCcCccEEEE
Q 012799 172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVI----CLSGHTLAVTCV 246 (456)
Q Consensus 172 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~----~~~~~~~~v~~~ 246 (456)
..-.+++++......+.-....+.|.+.+|.+ ||++|+++-. .=.-++||-....... ....-.+.|.++
T Consensus 134 dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~-----DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi 208 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIKTSGLIHCACWTK-----DGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSI 208 (671)
T ss_pred ceeEeeeeeeCCceEEEeccCCceEEEEEecC-----cCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEE
Confidence 55556666544332222335567899999999 8888877644 3356788854332110 011123455555
Q ss_pred EeCCCCeEEEEeC
Q 012799 247 KWGGDGVIYTGSQ 259 (456)
Q Consensus 247 ~~~~~~~l~~~~~ 259 (456)
.-.-+..++++..
T Consensus 209 ~AT~dsqVAvaTE 221 (671)
T PF15390_consen 209 EATVDSQVAVATE 221 (671)
T ss_pred EEeccceEEEEec
Confidence 5544444554443
No 399
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=96.26 E-value=0.31 Score=36.24 Aligned_cols=121 Identities=9% Similarity=0.112 Sum_probs=77.5
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc------ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC
Q 012799 155 CIAWSADGKHLVSGSKAGELQCWDPQTGKPSG------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228 (456)
Q Consensus 155 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 228 (456)
.-.|......|+.++.-|+|.|++........ ..+..-...|++++-.+.........|+.|+. ..+..||+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence 34565666688888899999999877543211 12333456777877666544445566777666 679999998
Q ss_pred CCeEEEEecCcCccEEEEEeCC----CCeEEEEeCCCcEEEEECCCCeEEEEe
Q 012799 229 LRKCVICLSGHTLAVTCVKWGG----DGVIYTGSQDCTIKVWETTQGKLIREL 277 (456)
Q Consensus 229 ~~~~~~~~~~~~~~v~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~ 277 (456)
...-+.... -...+.++.+.. ..-++..+.+..|.-||..-.+...+.
T Consensus 82 ~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 82 NNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cCchhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 776554332 345677776632 224555666678888887766655544
No 400
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.24 E-value=0.4 Score=39.36 Aligned_cols=136 Identities=19% Similarity=0.232 Sum_probs=84.0
Q ss_pred ccEEEEEECCCCCeEEEEEC----------CCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEE-EEeCCCeEEEE
Q 012799 109 EAVLSVAFSPDGRQLASGSG----------DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGELQCW 177 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~~----------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vw 177 (456)
...+.-..+|+|++++ |.. .|.++.|-.. ..+..+...-.--+.++|+.+.+.+. +-+.+-.|.-|
T Consensus 109 nR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred cccccCccCCCCceee-eeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 3445556789999844 321 2344555432 22222223334446788988776555 45567778778
Q ss_pred e--CCCCCCcccc----ccC----cccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEE
Q 012799 178 D--PQTGKPSGNP----LSG----HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVK 247 (456)
Q Consensus 178 d--~~~~~~~~~~----~~~----~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 247 (456)
| ..+|...... +.. ....--.++. ..+|..+++.-..++|.-.|..+++.+..++-....|+|++
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~I-----D~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitscc 260 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTI-----DTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCC 260 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceE-----ccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEE
Confidence 7 6666543210 000 0001112222 22778888888889999999999999999988899999999
Q ss_pred eCCCC
Q 012799 248 WGGDG 252 (456)
Q Consensus 248 ~~~~~ 252 (456)
|...+
T Consensus 261 FgGkn 265 (310)
T KOG4499|consen 261 FGGKN 265 (310)
T ss_pred ecCCC
Confidence 98765
No 401
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.98 E-value=0.91 Score=39.05 Aligned_cols=140 Identities=20% Similarity=0.209 Sum_probs=85.7
Q ss_pred cEEEEEECCCCCeEEEEE---CCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCCCc
Q 012799 110 AVLSVAFSPDGRQLASGS---GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD-PQTGKPS 185 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~~~~---~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~ 185 (456)
.+.+.+++++++.+|... ....++++.. +....... ....+....|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 788999999999887765 2334555544 33333322 233788889999987766666666666664 3333322
Q ss_pred cccc--cCcccceEEEEecccccCCCCCEEEEEe---CCCcEEEEECC---CC------eEEEEecCcCccEEEEEeCCC
Q 012799 186 GNPL--SGHKKWITGISWEPVHLNAPCRRFVSAS---KDGDARIWDVS---LR------KCVICLSGHTLAVTCVKWGGD 251 (456)
Q Consensus 186 ~~~~--~~~~~~v~~~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~---~~------~~~~~~~~~~~~v~~~~~~~~ 251 (456)
.... ......|..+.++| ||..++... .++.|.+--+. .+ ............++.+.|.++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSp-----DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSP-----DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred eEEecccccCCceEEEEECC-----CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 1111 11112899999999 999888766 34667766542 22 111222233568899999999
Q ss_pred CeEEEE
Q 012799 252 GVIYTG 257 (456)
Q Consensus 252 ~~l~~~ 257 (456)
+.|++.
T Consensus 177 ~~L~V~ 182 (253)
T PF10647_consen 177 STLVVL 182 (253)
T ss_pred CEEEEE
Confidence 844433
No 402
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.94 E-value=1.4 Score=42.86 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=32.4
Q ss_pred cccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEe
Q 012799 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR 399 (456)
Q Consensus 360 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 399 (456)
.+.+..+.+||+.++|+--..+|.|.+-+....+.+..+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 3567889999999999999999999999877666655544
No 403
>PRK13684 Ycf48-like protein; Provisional
Probab=95.93 E-value=0.91 Score=40.95 Aligned_cols=151 Identities=13% Similarity=0.142 Sum_probs=86.2
Q ss_pred cccEEEEEECCCCCeEEEEECCCcEEE-EeCCCCcceeEE-ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCc
Q 012799 108 TEAVLSVAFSPDGRQLASGSGDTTVRL-WDLNTQTPMFKC-TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d~~v~v-wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 185 (456)
...+.++.+.|++.+++++ ..|.+.. ++ ..++.-... ..-...++++.+.++++.++++ ..|.+.+=..+.|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 5678999999998777666 4554443 22 222222222 2345678999999998876665 5676653233444322
Q ss_pred ccccc---CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec---CcCccEEEEEeCCCCeEEEEeC
Q 012799 186 GNPLS---GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---GHTLAVTCVKWGGDGVIYTGSQ 259 (456)
Q Consensus 186 ~~~~~---~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~l~~~~~ 259 (456)
..... .....+.++.+.+ ++. ++.++.+|.+.. ....++.-.... .-......+.+..++..+..+.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~-----~~~-~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRT-----PGE-IWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred ccccCCccccccceeeEEEcC-----CCC-EEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECC
Confidence 11111 1223467788876 555 455556675543 334333322222 2233577777776676677788
Q ss_pred CCcEEEEEC
Q 012799 260 DCTIKVWET 268 (456)
Q Consensus 260 dg~i~iwd~ 268 (456)
.|.|..|+-
T Consensus 322 ~G~il~~~~ 330 (334)
T PRK13684 322 RGVLLRYVG 330 (334)
T ss_pred CceEEEecC
Confidence 888877763
No 404
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.85 E-value=2.3 Score=42.71 Aligned_cols=223 Identities=10% Similarity=0.032 Sum_probs=127.7
Q ss_pred eEEEEECCCcEEEEeCCCCcce--eEEecCCCCEEEEEEcCCCCEEEEEeCC--------------CeEEEEeCCCCCCc
Q 012799 122 QLASGSGDTTVRLWDLNTQTPM--FKCTGHKNWVLCIAWSADGKHLVSGSKA--------------GELQCWDPQTGKPS 185 (456)
Q Consensus 122 ~l~~~~~d~~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~d--------------g~i~vwd~~~~~~~ 185 (456)
.|+++. .+.+++..++.-+.+ +++. -......+++.+....+++.+.. ..++++|.++-+..
T Consensus 686 ~l~~~~-~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl 763 (1096)
T KOG1897|consen 686 SLASAN-GGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL 763 (1096)
T ss_pred eEEEec-CCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence 455553 346777766653332 2222 33445667776644444443321 13777777766544
Q ss_pred cccccCcccceE---EEEecccccCCC-CCEEEEEeC----------CCcEEEEECCCCeEEEEecCc--CccEEEEEeC
Q 012799 186 GNPLSGHKKWIT---GISWEPVHLNAP-CRRFVSASK----------DGDARIWDVSLRKCVICLSGH--TLAVTCVKWG 249 (456)
Q Consensus 186 ~~~~~~~~~~v~---~~~~~~~~~~~~-~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~ 249 (456)
..........+. ++.|.. + +.++++|+. .|.|.++.....+.+.....+ .+.+.++..-
T Consensus 764 ~~hef~~~E~~~Si~s~~~~~-----d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f 838 (1096)
T KOG1897|consen 764 SSHEFERNETALSIISCKFTD-----DPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF 838 (1096)
T ss_pred eeccccccceeeeeeeeeecC-----CCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh
Confidence 322222222333 334554 3 567777753 577888887774444444322 3444444433
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCC
Q 012799 250 GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (456)
Q Consensus 250 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (456)
+|+++ ++-...|++|+..+.+.++.-..+..++..+.+.-. +
T Consensus 839 -ngkll-A~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~------------------------------------g 880 (1096)
T KOG1897|consen 839 -NGKLL-AGINQSVRLYEWTTERELRIECNISNPIIALDLQVK------------------------------------G 880 (1096)
T ss_pred -CCeEE-EecCcEEEEEEccccceehhhhcccCCeEEEEEEec------------------------------------C
Confidence 33444 455678999999988777776667777777777665 5
Q ss_pred CEEEEEeCCCcEEEEecCCCC--CCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799 330 ERLVSGSDDFTMFLWEPAVSK--QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (456)
Q Consensus 330 ~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 390 (456)
+.++.|..-+.+.+...+..+ -....-.-+..+.+++.+-.+. ..+.+..+|.+++-...
T Consensus 881 deI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d-~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 881 DEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDD-TYLGAENSGNLFTVRKD 942 (1096)
T ss_pred cEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCc-eEEeecccccEEEEEec
Confidence 668888887777665544333 2222223466778888776544 44555677887777544
No 405
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.84 E-value=0.64 Score=43.72 Aligned_cols=149 Identities=15% Similarity=0.275 Sum_probs=83.9
Q ss_pred cccEEEEEECCCCCe-EEEEE--CCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCC----CCEEEEEeCCCeEEEEeCC
Q 012799 108 TEAVLSVAFSPDGRQ-LASGS--GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD----GKHLVSGSKAGELQCWDPQ 180 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~-l~~~~--~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~s~~~dg~i~vwd~~ 180 (456)
-.+|..++|. ||+. ++|.- .+|.+++=|. ..-|.-..|..+.|.|- ...+++......|.||.+.
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds-------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS-------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCCc-------cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 3478889998 4544 44431 2333322221 12244557899999983 3355666677899999876
Q ss_pred CC-----CCcccccc----CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC--CeEEEEecCcCccEEEEEeC
Q 012799 181 TG-----KPSGNPLS----GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL--RKCVICLSGHTLAVTCVKWG 249 (456)
Q Consensus 181 ~~-----~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~ 249 (456)
.. +....... ...---..+.|+| ....|++-.....-.++++.. .+....+ ...+.|.|.+|.
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-----k~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT 164 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-----KKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWT 164 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccC-----CCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEec
Confidence 22 21110000 1111124577888 666676666554444555543 2233333 356789999999
Q ss_pred CCC-eEEEE-eCCCcEEEEECCC
Q 012799 250 GDG-VIYTG-SQDCTIKVWETTQ 270 (456)
Q Consensus 250 ~~~-~l~~~-~~dg~i~iwd~~~ 270 (456)
+|| +|+++ +..=.-++||-..
T Consensus 165 ~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 165 KDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CcCCEEEEEeCCeEEEEEecCch
Confidence 999 55544 3334577898543
No 406
>PHA03098 kelch-like protein; Provisional
Probab=95.83 E-value=0.64 Score=45.26 Aligned_cols=106 Identities=11% Similarity=0.077 Sum_probs=52.9
Q ss_pred CCCCeEEEEECCC------cEEEEeCCCCcceeE--EecCCCCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCCC
Q 012799 118 PDGRQLASGSGDT------TVRLWDLNTQTPMFK--CTGHKNWVLCIAWSADGKHLVSGSKA-----GELQCWDPQTGKP 184 (456)
Q Consensus 118 ~~~~~l~~~~~d~------~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~ 184 (456)
.++.+++.|+.++ .+..||..+.+-... +.........+.+ +++..+.||.+ ..+..||..+++-
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3556677776542 467788766542211 1111112222222 67777788765 3477888876643
Q ss_pred ccccccCcccceEEEEecccccCCCCCEEEEEeCC------CcEEEEECCCCe
Q 012799 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD------GDARIWDVSLRK 231 (456)
Q Consensus 185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~ 231 (456)
.......+...-.+++. - ++..++.||.+ ..+..||..+.+
T Consensus 371 ~~~~~lp~~r~~~~~~~-~-----~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 371 REEPPLIFPRYNPCVVN-V-----NNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred eeCCCcCcCCccceEEE-E-----CCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 21111011110111111 1 55677777732 357888887654
No 407
>PHA03098 kelch-like protein; Provisional
Probab=95.81 E-value=0.71 Score=44.95 Aligned_cols=105 Identities=14% Similarity=0.076 Sum_probs=49.7
Q ss_pred CCCEEEEEeCCC------eEEEEeCCCCCCcccc-ccCcccceEEEEecccccCCCCCEEEEEeCC-----CcEEEEECC
Q 012799 161 DGKHLVSGSKAG------ELQCWDPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSASKD-----GDARIWDVS 228 (456)
Q Consensus 161 ~~~~l~s~~~dg------~i~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~ 228 (456)
++..++.||.++ .+..||..+++..... +.........+.. ++..++.||.+ ..+..||..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-------~~~lyv~GG~~~~~~~~~v~~yd~~ 366 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF-------NNRIYVIGGIYNSISLNTVESWKPG 366 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE-------CCEEEEEeCCCCCEecceEEEEcCC
Confidence 566677776543 4778887766532211 1101111112221 56677888765 347778876
Q ss_pred CCeEEEEecC-cCccEEEEEeCCCCeEEEEeCC------CcEEEEECCCCe
Q 012799 229 LRKCVICLSG-HTLAVTCVKWGGDGVIYTGSQD------CTIKVWETTQGK 272 (456)
Q Consensus 229 ~~~~~~~~~~-~~~~v~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~ 272 (456)
+.+-...-.- ....-.+++...+...+.|+.+ ..+..||..+++
T Consensus 367 ~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 367 ESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred CCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 6542221110 1111112222222245555532 357788877654
No 408
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.68 E-value=0.44 Score=43.84 Aligned_cols=141 Identities=12% Similarity=0.148 Sum_probs=88.7
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--------eEEEEeCCCcEEEEECCCCe-EEEEeecCCcc
Q 012799 213 FVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--------VIYTGSQDCTIKVWETTQGK-LIRELKGHGHW 283 (456)
Q Consensus 213 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--------~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~ 283 (456)
+..|+....++-.|++.|+.+....-|... -+.+.|.. .-++|-.+..|.-.|.+-.. .+.... ....
T Consensus 483 ~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-sKdY 559 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-SKDY 559 (776)
T ss_pred EecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-ehhc
Confidence 334566667888899999988888766554 46666643 23455566666666665322 111111 1111
Q ss_pred eEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccE
Q 012799 284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLV 363 (456)
Q Consensus 284 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 363 (456)
.+.-.|+ ........++++++..|.|++|| +-+......+.+-...|
T Consensus 560 ~tKn~Fs--------------------------------s~~tTesGyIa~as~kGDirLyD-Rig~rAKtalP~lG~aI 606 (776)
T COG5167 560 KTKNKFS--------------------------------SGMTTESGYIAAASRKGDIRLYD-RIGKRAKTALPGLGDAI 606 (776)
T ss_pred ccccccc--------------------------------ccccccCceEEEecCCCceeeeh-hhcchhhhcCcccccce
Confidence 1111111 11122356799999999999999 66666666777888889
Q ss_pred eEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799 364 NHVYFSPDGQWVASASFDKSIKLWNGT 390 (456)
Q Consensus 364 ~~~~~sp~~~~l~s~~~dg~i~iwd~~ 390 (456)
..+..+.+|+++++.+ ...+.+-|++
T Consensus 607 k~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 607 KHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred eeeEeecCCcEEEEee-cceEEEEecc
Confidence 9999999999866655 3456666654
No 409
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=95.65 E-value=1.9 Score=40.59 Aligned_cols=150 Identities=14% Similarity=0.130 Sum_probs=83.8
Q ss_pred cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 012799 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHK-NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 186 (456)
..+|.++.+..+|. +..|+.|| +..||..+++.+..-.... ..|..+.-+-.| .+..|+.+| +.+.+.+..+...
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 45788888888875 66677777 7778877777665544333 566666655455 467777766 6676665533222
Q ss_pred ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCc--CccEEEEEeCCCCeEEEEeCCCcEE
Q 012799 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH--TLAVTCVKWGGDGVIYTGSQDCTIK 264 (456)
Q Consensus 187 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~l~~~~~dg~i~ 264 (456)
.-..-..+.|..+.-. ....+-.|+..|..+.---+.+-.....+.| .+.|.++..+.+|.+.+++.+|.++
T Consensus 240 ~~~~lp~~~I~ll~qD------~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~ 313 (671)
T COG3292 240 WGPMLPSGNILLLVQD------AQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVR 313 (671)
T ss_pred cCCCCcchheeeeecc------cCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCCEeeeccCceEE
Confidence 1111222333333322 1235566666664433222222111112222 3456677777788889888888766
Q ss_pred EEE
Q 012799 265 VWE 267 (456)
Q Consensus 265 iwd 267 (456)
+-+
T Consensus 314 ~~~ 316 (671)
T COG3292 314 YLT 316 (671)
T ss_pred Eec
Confidence 544
No 410
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.53 E-value=1.9 Score=39.44 Aligned_cols=220 Identities=15% Similarity=0.121 Sum_probs=98.2
Q ss_pred CCCeEEEEE-CCCcEEEEeCCCCc----ceeEEec---CC----CCEEEEEEcCCCCEEEEE--eCC----CeEEEEeCC
Q 012799 119 DGRQLASGS-GDTTVRLWDLNTQT----PMFKCTG---HK----NWVLCIAWSADGKHLVSG--SKA----GELQCWDPQ 180 (456)
Q Consensus 119 ~~~~l~~~~-~d~~v~vwd~~~~~----~~~~~~~---~~----~~v~~~~~~~~~~~l~s~--~~d----g~i~vwd~~ 180 (456)
+.++|+..+ ..+.|+|.|+.+.. ..+.+.. +. .....+.--|+|+.++++ ..+ |-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777776 67799999997532 2233321 11 122233344688888874 222 457788877
Q ss_pred CCCCcccccc--CcccceEEEEecccccCCCCCEEEEEe--------------------CCCcEEEEECCCCeEEEEecC
Q 012799 181 TGKPSGNPLS--GHKKWITGISWEPVHLNAPCRRFVSAS--------------------KDGDARIWDVSLRKCVICLSG 238 (456)
Q Consensus 181 ~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~l~~~~--------------------~dg~i~iwd~~~~~~~~~~~~ 238 (456)
+.+....-.. .....-+.+-|.| ..+.+++.. ...++.+||+.+.+.++++.-
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qp-----r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idL 240 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQP-----RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDL 240 (461)
T ss_dssp T--EEEE--SB-TT------EEEET-----TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES
T ss_pred cccccceeccCCCCCCCCCCeEEcC-----CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEec
Confidence 6554332111 1123345666666 445666543 245799999999999988853
Q ss_pred cC--ccEEEEEeCC--CC--eEEEEeCCCcEEEEEC-CCCeE----EEEeecC-----------------CcceEEEEec
Q 012799 239 HT--LAVTCVKWGG--DG--VIYTGSQDCTIKVWET-TQGKL----IRELKGH-----------------GHWVNSLALS 290 (456)
Q Consensus 239 ~~--~~v~~~~~~~--~~--~l~~~~~dg~i~iwd~-~~~~~----~~~~~~~-----------------~~~i~~~~~~ 290 (456)
.. .....+.|.. +. -++.+...++|..|-. ..++- +-.+... ..-++.|.++
T Consensus 241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS 320 (461)
T PF05694_consen 241 GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS 320 (461)
T ss_dssp -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence 32 2345566643 33 4444555666666543 33321 1111110 1224555555
Q ss_pred CcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEE-EEeCCCcEEEEecCCCCCCccccc------------
Q 012799 291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV-SGSDDFTMFLWEPAVSKQPKTRMT------------ 357 (456)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~------------ 357 (456)
.+ .++|. +.-.+|.++.||+.....+...-.
T Consensus 321 lD------------------------------------DrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~ 364 (461)
T PF05694_consen 321 LD------------------------------------DRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDH 364 (461)
T ss_dssp TT------------------------------------S-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--
T ss_pred cC------------------------------------CCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCC
Confidence 55 34444 455689999999987665543211
Q ss_pred ------cccccEeEEEECCCCCEEEEEE
Q 012799 358 ------GHQQLVNHVYFSPDGQWVASAS 379 (456)
Q Consensus 358 ------~~~~~v~~~~~sp~~~~l~s~~ 379 (456)
.-.+...-+..|-||+.|...+
T Consensus 365 ~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 365 PVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TTS------S----EEE-TTSSEEEEE-
T ss_pred ccccccccCCCCCeEEEccCCeEEEEEe
Confidence 0112345678888998877653
No 411
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.43 E-value=2.1 Score=39.21 Aligned_cols=194 Identities=9% Similarity=0.088 Sum_probs=83.8
Q ss_pred CCCEEEEEe-CCCeEEEEeCCCCCCccc---cccC---cc----cceEEEEecccccCCCCCEEEEEe------CCCcEE
Q 012799 161 DGKHLVSGS-KAGELQCWDPQTGKPSGN---PLSG---HK----KWITGISWEPVHLNAPCRRFVSAS------KDGDAR 223 (456)
Q Consensus 161 ~~~~l~s~~-~dg~i~vwd~~~~~~~~~---~~~~---~~----~~v~~~~~~~~~~~~~~~~l~~~~------~dg~i~ 223 (456)
+.++|+..+ ..+.|.|.|+.+.....+ .+.. +. ..-..+--.| +|+.++++- .-|.+.
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-----~G~imIS~lGd~~G~g~Ggf~ 160 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-----DGRIMISALGDADGNGPGGFV 160 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-----S--EEEEEEEETTS-S--EEE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-----CccEEEEeccCCCCCCCCcEE
Confidence 456777766 577899999885432111 1111 00 0111111122 677777742 234678
Q ss_pred EEECCCCeEEEEecCcC---ccEEEEEeCCCC-eEEEEe--------------------CCCcEEEEECCCCeEEEEeec
Q 012799 224 IWDVSLRKCVICLSGHT---LAVTCVKWGGDG-VIYTGS--------------------QDCTIKVWETTQGKLIRELKG 279 (456)
Q Consensus 224 iwd~~~~~~~~~~~~~~---~~v~~~~~~~~~-~l~~~~--------------------~dg~i~iwd~~~~~~~~~~~~ 279 (456)
++|-++.+......... ..-..+-|.|.. .+++.. ...++.+||+.+.+.++++..
T Consensus 161 llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idL 240 (461)
T PF05694_consen 161 LLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDL 240 (461)
T ss_dssp EE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES
T ss_pred EEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEec
Confidence 88877766665554322 223445555544 444432 246799999999999999875
Q ss_pred CC--cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC------
Q 012799 280 HG--HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ------ 351 (456)
Q Consensus 280 ~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------ 351 (456)
.. .....+.|..+..- ..-++.+.-.++|..|--.....
T Consensus 241 g~~g~~pLEvRflH~P~~---------------------------------~~gFvg~aLss~i~~~~k~~~g~W~a~kV 287 (461)
T PF05694_consen 241 GEEGQMPLEVRFLHDPDA---------------------------------NYGFVGCALSSSIWRFYKDDDGEWAAEKV 287 (461)
T ss_dssp -TTEEEEEEEEE-SSTT-----------------------------------EEEEEEE--EEEEEEEE-ETTEEEEEEE
T ss_pred CCCCCceEEEEecCCCCc---------------------------------cceEEEEeccceEEEEEEcCCCCeeeeEE
Confidence 43 23445555544110 11133333444454443211110
Q ss_pred ---------------CccccccccccEeEEEECCCCCEEEEEE-CCCcEEEEeCCCC
Q 012799 352 ---------------PKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTG 392 (456)
Q Consensus 352 ---------------~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~ 392 (456)
.+..+..-..-|+.+..|.|.++|...+ .+|.|+.||+.+.
T Consensus 288 i~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 288 IDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred EECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 0011111235589999999999987655 6899999999873
No 412
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.41 E-value=1.7 Score=38.19 Aligned_cols=228 Identities=14% Similarity=0.119 Sum_probs=104.6
Q ss_pred cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe---cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CCCc
Q 012799 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT---GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT-GKPS 185 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~ 185 (456)
...++.|..+ ..+++| ..+ +.+...+.++.-..+. .-......+....++..++ .+..|. ||.... |+.-
T Consensus 63 ~l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~--iy~T~DgG~tW 136 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGA--IYRTTDGGKTW 136 (302)
T ss_dssp EEEEEEEETT-EEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT----EEEESSTTSSE
T ss_pred eEEEEEecCC-ceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCc--EEEeCCCCCCe
Confidence 3567777643 445554 344 4444444454333322 1223334444444443333 344454 333333 3322
Q ss_pred cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEE
Q 012799 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKV 265 (456)
Q Consensus 186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i 265 (456)
..........+..+...+ +|.+++++.......-||-....-...-......|..|.|.|++.|......|.|+.
T Consensus 137 ~~~~~~~~gs~~~~~r~~-----dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~ 211 (302)
T PF14870_consen 137 QAVVSETSGSINDITRSS-----DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQF 211 (302)
T ss_dssp EEEE-S----EEEEEE-T-----TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEE
T ss_pred eEcccCCcceeEeEEECC-----CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEE
Confidence 222334446677777666 888888887766667888654322222333568899999999996666778899988
Q ss_pred EEC-CCCeEEEE----eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCc
Q 012799 266 WET-TQGKLIRE----LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (456)
Q Consensus 266 wd~-~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 340 (456)
=+. ...+.... +....-.+..+++.++. + +.+++..|.
T Consensus 212 s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~------------------------------------~-~wa~gg~G~ 254 (302)
T PF14870_consen 212 SDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN------------------------------------E-IWAVGGSGT 254 (302)
T ss_dssp EE-TTEEEEE---B-TTSS--S-EEEEEESSSS--------------------------------------EEEEESTT-
T ss_pred ccCCCCccccccccCCcccCceeeEEEEecCCC------------------------------------C-EEEEeCCcc
Confidence 872 22222111 11122336777777652 2 444555565
Q ss_pred EEEEecCCCCCCcccc--ccccccEeEEEECCCCCEEEEEECCCcEEEE
Q 012799 341 MFLWEPAVSKQPKTRM--TGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387 (456)
Q Consensus 341 i~iwd~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw 387 (456)
+..=. ..++.-.+.. ..-......+.|.++.+-++. +.+|.+.-|
T Consensus 255 l~~S~-DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 255 LLVST-DGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp EEEES-STTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred EEEeC-CCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 54432 3333322221 122345778888765544554 468876654
No 413
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.28 E-value=2.1 Score=38.53 Aligned_cols=50 Identities=26% Similarity=0.338 Sum_probs=33.9
Q ss_pred cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcc---eeEE----ecCCCCEEEEEEcCC
Q 012799 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP---MFKC----TGHKNWVLCIAWSAD 161 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~---~~~~----~~~~~~v~~~~~~~~ 161 (456)
.-++|+|.|||+++++ ...|.|++++ ..+.. +..+ .........++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 3578999999987665 5699999999 33332 2222 234567899999994
No 414
>PRK10115 protease 2; Provisional
Probab=95.23 E-value=3.8 Score=41.12 Aligned_cols=110 Identities=7% Similarity=0.019 Sum_probs=64.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC------
Q 012799 151 NWVLCIAWSADGKHLVSGSKA-----GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD------ 219 (456)
Q Consensus 151 ~~v~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d------ 219 (456)
-.+..+.|+||+++|+.+... ..|++.|+.+|..+...+..-. ..++|.+ +++.|+....+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~---~~~~w~~-----D~~~~~y~~~~~~~~~~ 198 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE---PSFVWAN-----DSWTFYYVRKHPVTLLP 198 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc---eEEEEee-----CCCEEEEEEecCCCCCC
Confidence 346678899999988875332 3589999998874432332221 4588988 77767665442
Q ss_pred CcEEEEECCCC--eEEEEecCcCccEE-EEEeCCCC-eEEEEeC---CCcEEEEEC
Q 012799 220 GDARIWDVSLR--KCVICLSGHTLAVT-CVKWGGDG-VIYTGSQ---DCTIKVWET 268 (456)
Q Consensus 220 g~i~iwd~~~~--~~~~~~~~~~~~v~-~~~~~~~~-~l~~~~~---dg~i~iwd~ 268 (456)
..|+.+++.++ +-...+........ ....+.++ .++..+. ++.+.+++.
T Consensus 199 ~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 199 YQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 36788888877 33333333222222 33334355 3333332 356888884
No 415
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.20 E-value=0.73 Score=46.76 Aligned_cols=143 Identities=15% Similarity=0.109 Sum_probs=89.5
Q ss_pred CCEEEEEEcCCCCEEEEE--eCCCeEEEEeCCCCCCcc----ccccCc------ccceEEEEecccccCCCCCEEEEEeC
Q 012799 151 NWVLCIAWSADGKHLVSG--SKAGELQCWDPQTGKPSG----NPLSGH------KKWITGISWEPVHLNAPCRRFVSASK 218 (456)
Q Consensus 151 ~~v~~~~~~~~~~~l~s~--~~dg~i~vwd~~~~~~~~----~~~~~~------~~~v~~~~~~~~~~~~~~~~l~~~~~ 218 (456)
-.+..+...+|+...++. +.+-.|..||+++-.... ..+..| .....++.|.|.-. ...+....
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp----~n~av~l~ 176 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP----LNSAVDLS 176 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc----chhhhhcc
Confidence 455666666776655443 333478999987543211 112212 23345677887432 24667778
Q ss_pred CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeec----CCcceEEEEecCcc
Q 012799 219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKG----HGHWVNSLALSTEY 293 (456)
Q Consensus 219 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~~~~~~~~ 293 (456)
|+.|++..+........-.......+|++|+|.| .+++|...|++.-|-.. .+....+.. ....|.+++|-...
T Consensus 177 dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 177 DLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred ccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence 8889888775443332222346678999999999 99999999999998654 333333322 24678899988776
Q ss_pred eeeec
Q 012799 294 ALRTG 298 (456)
Q Consensus 294 ~~~~~ 298 (456)
.+...
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 55443
No 416
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=3.4 Score=40.31 Aligned_cols=53 Identities=13% Similarity=0.299 Sum_probs=39.0
Q ss_pred CCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 012799 128 GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (456)
Q Consensus 128 ~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 182 (456)
.-..|+||++. |..+..+.-....+..+.|+.+. .|+....+|++++|++...
T Consensus 62 a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge 114 (829)
T KOG2280|consen 62 ARPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGE 114 (829)
T ss_pred cceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchh
Confidence 34568999975 66666555455588999999665 5666689999999998643
No 417
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.14 E-value=2.1 Score=37.66 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=31.0
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEe
Q 012799 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388 (456)
Q Consensus 329 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd 388 (456)
+.+++++..-....-||.-.. .-..........|..+.|+|++.+.+.+ ..|.|++=+
T Consensus 156 G~~vavs~~G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 156 GRYVAVSSRGNFYSSWDPGQT-TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp S-EEEEETTSSEEEEE-TT-S-S-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred CcEEEEECcccEEEEecCCCc-cceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 455666654444556773221 1122223345779999999998876654 788888877
No 418
>PHA02790 Kelch-like protein; Provisional
Probab=95.14 E-value=2.1 Score=40.98 Aligned_cols=141 Identities=7% Similarity=-0.045 Sum_probs=66.1
Q ss_pred CCCeEEEEECCC-----cEEEEeCCCCccee--EEecCCCCEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCCCccc-c
Q 012799 119 DGRQLASGSGDT-----TVRLWDLNTQTPMF--KCTGHKNWVLCIAWSADGKHLVSGSKAG--ELQCWDPQTGKPSGN-P 188 (456)
Q Consensus 119 ~~~~l~~~~~d~-----~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~-~ 188 (456)
++.+++.|+.++ .+..||..+++-.. .+.........+. -++...+.||.++ .+..||..+++-... .
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 456667777543 46677776543211 1111111122222 3677777777643 577888765532210 1
Q ss_pred ccCcccceEEEEecccccCCCCCEEEEEeCCC---cEEEEECCCCeEEEE--ecCcCccEEEEEeCCCCeEEEEeCCCcE
Q 012799 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDG---DARIWDVSLRKCVIC--LSGHTLAVTCVKWGGDGVIYTGSQDCTI 263 (456)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~dg~i 263 (456)
+.........+.. ++...+.||.++ .+..||.++.+-... +...... .+++. -++.+++.+ |.+
T Consensus 349 l~~~r~~~~~~~~-------~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~~-~~~~IYv~G--G~~ 417 (480)
T PHA02790 349 LLKPRCNPAVASI-------NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCALV-FGRRLFLVG--RNA 417 (480)
T ss_pred CCCCCcccEEEEE-------CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceEEE-ECCEEEEEC--Cce
Confidence 1111111111221 667778887654 467788766543221 1111111 12222 234444333 356
Q ss_pred EEEECCCCe
Q 012799 264 KVWETTQGK 272 (456)
Q Consensus 264 ~iwd~~~~~ 272 (456)
.+||.++++
T Consensus 418 e~ydp~~~~ 426 (480)
T PHA02790 418 EFYCESSNT 426 (480)
T ss_pred EEecCCCCc
Confidence 778877654
No 419
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.11 E-value=1.8 Score=36.81 Aligned_cols=171 Identities=19% Similarity=0.122 Sum_probs=104.3
Q ss_pred EEEEEECCCCCeEEEEECCC--cEEEEeCCCCcceeEEecC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc
Q 012799 111 VLSVAFSPDGRQLASGSGDT--TVRLWDLNTQTPMFKCTGH-KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187 (456)
Q Consensus 111 V~~~~~s~~~~~l~~~~~d~--~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 187 (456)
...+.|..+|.++-+.+.-| .|+.+|+.+++......-. .----.++.. +++.....-.++...+||.++-+.+..
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEE
Confidence 45678877888888877655 7999999999877654421 2222333433 333444445688999999988766553
Q ss_pred cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCc-----CccEEEEEeCCCCeEEEE-eCCC
Q 012799 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH-----TLAVTCVKWGGDGVIYTG-SQDC 261 (456)
Q Consensus 188 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~l~~~-~~dg 261 (456)
.. ..+.-+.++. ++..|+.......++.+|..+.+....+.-. -..++.+.|. +|.+++- =...
T Consensus 126 ~~--y~~EGWGLt~-------dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td 195 (264)
T PF05096_consen 126 FP--YPGEGWGLTS-------DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTD 195 (264)
T ss_dssp EE---SSS--EEEE-------CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSS
T ss_pred Ee--cCCcceEEEc-------CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCC
Confidence 22 2344556663 6778888887889999999877666655322 1245566666 5544443 3456
Q ss_pred cEEEEECCCCeEEEEeec---------------CCcceEEEEecCc
Q 012799 262 TIKVWETTQGKLIRELKG---------------HGHWVNSLALSTE 292 (456)
Q Consensus 262 ~i~iwd~~~~~~~~~~~~---------------~~~~i~~~~~~~~ 292 (456)
.|...|..+|+....+.. ...-.+.|++.|.
T Consensus 196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~ 241 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE 241 (264)
T ss_dssp EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT
T ss_pred eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC
Confidence 788889999988776521 1245778888776
No 420
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.06 E-value=0.15 Score=29.34 Aligned_cols=31 Identities=32% Similarity=0.411 Sum_probs=26.2
Q ss_pred ccEEEEEECCC-C--CeEEEEECCCcEEEEeCCC
Q 012799 109 EAVLSVAFSPD-G--RQLASGSGDTTVRLWDLNT 139 (456)
Q Consensus 109 ~~V~~~~~s~~-~--~~l~~~~~d~~v~vwd~~~ 139 (456)
++|.++.|+|+ + ++|+.+-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 47899999984 4 5888888889999999985
No 421
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.92 E-value=0.51 Score=43.41 Aligned_cols=138 Identities=15% Similarity=0.278 Sum_probs=85.9
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE
Q 012799 253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (456)
Q Consensus 253 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 332 (456)
.+..|.....++-.|+..|+.+.....+... -+.+.|...+. ......-
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~-----------------------------qmt~eqt 530 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQ-----------------------------QMTDEQT 530 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHH-----------------------------hcCccce
Confidence 4445666677888899999999888766554 56666653220 0012334
Q ss_pred EEEeCCCcEEEEecCCCCCCccccccccccEeEEEECC----CCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799 333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP----DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408 (456)
Q Consensus 333 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 408 (456)
+.|-.+..|.-.|++.....+... .....++.-.||. .+.++|.|+..|.|++||--.-+....+.+....|..+
T Consensus 531 lvGlS~~svFrIDPR~~gNKi~v~-esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~i 609 (776)
T COG5167 531 LVGLSDYSVFRIDPRARGNKIKVV-ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHI 609 (776)
T ss_pred EEeecccceEEecccccCCceeee-eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeee
Confidence 566677777777876655322211 1122222223332 45589999999999999965444444566677778777
Q ss_pred EeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC
Q 012799 409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449 (456)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~ 449 (456)
..+.+|+++++.+.
T Consensus 610 ---------------------------dvta~Gk~ilaTCk 623 (776)
T COG5167 610 ---------------------------DVTANGKHILATCK 623 (776)
T ss_pred ---------------------------EeecCCcEEEEeec
Confidence 66888887665544
No 422
>PHA02790 Kelch-like protein; Provisional
Probab=94.82 E-value=3.6 Score=39.34 Aligned_cols=103 Identities=10% Similarity=0.041 Sum_probs=48.9
Q ss_pred CCCEEEEEeCCC-----eEEEEeCCCCCCccc-cccCcccceEEEEecccccCCCCCEEEEEeCC--CcEEEEECCCCeE
Q 012799 161 DGKHLVSGSKAG-----ELQCWDPQTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKD--GDARIWDVSLRKC 232 (456)
Q Consensus 161 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~ 232 (456)
++..+++||.++ .+..||..++.-... .+.........+.. ++...+.||.+ ..+..||..+.+-
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~-------~~~iYviGG~~~~~sve~ydp~~n~W 343 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA-------NNKLYVVGGLPNPTSVERWFHGDAAW 343 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE-------CCEEEEECCcCCCCceEEEECCCCeE
Confidence 455667777543 477788876542211 11111111111221 56677788764 3577888765432
Q ss_pred EE--EecCcCccEEEEEeCCCC-eEEEEeCCC---cEEEEECCCCe
Q 012799 233 VI--CLSGHTLAVTCVKWGGDG-VIYTGSQDC---TIKVWETTQGK 272 (456)
Q Consensus 233 ~~--~~~~~~~~v~~~~~~~~~-~l~~~~~dg---~i~iwd~~~~~ 272 (456)
.. .+....... +++.. +| ..+.|+.++ .+..||.++.+
T Consensus 344 ~~~~~l~~~r~~~-~~~~~-~g~IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 344 VNMPSLLKPRCNP-AVASI-NNVIYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred EECCCCCCCCccc-EEEEE-CCEEEEecCcCCCCccEEEEeCCCCE
Confidence 22 111111111 22222 34 445555443 46677776654
No 423
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.81 E-value=0.0031 Score=56.71 Aligned_cols=145 Identities=18% Similarity=0.301 Sum_probs=99.7
Q ss_pred EEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCCcccccc
Q 012799 112 LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPLS 190 (456)
Q Consensus 112 ~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~ 190 (456)
....|-|.+.-++.++.+..+..||-. ++...... ..+....++|..++..++ .+-..+.+.+||+.+.........
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 345667766668888888888899844 34333332 455667788888776555 455678999999986543321111
Q ss_pred CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEE
Q 012799 191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIK 264 (456)
Q Consensus 191 ~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~ 264 (456)
+ ...-.-+.|++ ....++.+...|.+.+++..+.+.+.....|...++++++.+.++.+.++.|..+.
T Consensus 116 g-~~s~sll~wsK-----g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~ 183 (615)
T KOG2247|consen 116 G-TSSKSLLAWSK-----GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLS 183 (615)
T ss_pred C-cchHHHHhhcc-----CCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHH
Confidence 1 11111256766 66778888889999999998877776666699999999999998777776665443
No 424
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.75 E-value=0.97 Score=44.31 Aligned_cols=117 Identities=13% Similarity=0.145 Sum_probs=80.8
Q ss_pred cEEEEEECC--CCCeEEEEECCCcEEEEeCCC-------C-------------cceeEEecCCCCEEEEEEc--CCCCEE
Q 012799 110 AVLSVAFSP--DGRQLASGSGDTTVRLWDLNT-------Q-------------TPMFKCTGHKNWVLCIAWS--ADGKHL 165 (456)
Q Consensus 110 ~V~~~~~s~--~~~~l~~~~~d~~v~vwd~~~-------~-------------~~~~~~~~~~~~v~~~~~~--~~~~~l 165 (456)
.|+.|.... +...|+.+..||.|.+|.+++ . ++...+. -...++.++++ ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 455555543 456899999999999997531 0 0112222 34578999998 788899
Q ss_pred EEEeCCCeEEEEeCCCC--CCccccccCcccceEEEEecccccCCCCC-EEEEEeCCCcEEEEEC
Q 012799 166 VSGSKAGELQCWDPQTG--KPSGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDARIWDV 227 (456)
Q Consensus 166 ~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~ 227 (456)
|+++....|.||-.... +........+...|.+++|.+...+..|. .+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 99988888888865442 22111122466789999999877655554 7778888999999887
No 425
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.74 E-value=0.21 Score=28.75 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=26.1
Q ss_pred ccEeEEEECCCC---CEEEEEECCCcEEEEeCCC
Q 012799 361 QLVNHVYFSPDG---QWVASASFDKSIKLWNGTT 391 (456)
Q Consensus 361 ~~v~~~~~sp~~---~~l~s~~~dg~i~iwd~~~ 391 (456)
+.++++.|||+. .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 358999999854 5888888889999999985
No 426
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.73 E-value=2.5 Score=36.54 Aligned_cols=232 Identities=13% Similarity=0.129 Sum_probs=116.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCC------CCCccccccC-----cccceEEEEecccc---cCC----CCCEE
Q 012799 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQT------GKPSGNPLSG-----HKKWITGISWEPVH---LNA----PCRRF 213 (456)
Q Consensus 152 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~~~~-----~~~~v~~~~~~~~~---~~~----~~~~l 213 (456)
.-+.|+++|.+.+-++....+...+||... .+.+...+.. .....+.+.|+... ... ....|
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 457899999998888877788999999861 1111111111 12346667666411 011 12357
Q ss_pred EEEeCCCcEEEEECCCCeE-----EEEec-CcCcc-EEEEEeCCC--C-eEE-EEeCCCcEEEEECCCCeEEEEeecCCc
Q 012799 214 VSASKDGDARIWDVSLRKC-----VICLS-GHTLA-VTCVKWGGD--G-VIY-TGSQDCTIKVWETTQGKLIRELKGHGH 282 (456)
Q Consensus 214 ~~~~~dg~i~iwd~~~~~~-----~~~~~-~~~~~-v~~~~~~~~--~-~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~ 282 (456)
+.+++||+|.-|...-... ...+. ..... -..+++... + .|+ +--..++|.+||-.-.+.... .....
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~-g~F~D 182 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP-GSFID 182 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC-CCccC
Confidence 8899999999998532211 11221 11122 233444322 2 343 334577888887543222100 00000
Q ss_pred ceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccc--cccc
Q 012799 283 WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM--TGHQ 360 (456)
Q Consensus 283 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~ 360 (456)
+-.-..+.|-.....+ ...+. .-....+....=+.|..-|.|-+||+.-. .++.+ .+.-
T Consensus 183 P~iPagyAPFnIqnig-----~~lyV------------tYA~qd~~~~d~v~G~G~G~VdvFd~~G~--l~~r~as~g~L 243 (336)
T TIGR03118 183 PALPAGYAPFNVQNLG-----GTLYV------------TYAQQDADRNDEVAGAGLGYVNVFTLNGQ--LLRRVASSGRL 243 (336)
T ss_pred CCCCCCCCCcceEEEC-----CeEEE------------EEEecCCcccccccCCCcceEEEEcCCCc--EEEEeccCCcc
Confidence 0000001110000000 00000 00000001112334455678899985432 23322 3334
Q ss_pred ccEeEEEECC------CCCEEEEEECCCcEEEEeCCCCeEEEEEecccc
Q 012799 361 QLVNHVYFSP------DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403 (456)
Q Consensus 361 ~~v~~~~~sp------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 403 (456)
...+.|+..| .|.+|+---.||+|..||..+|+.+..+....+
T Consensus 244 NaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G 292 (336)
T TIGR03118 244 NAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDN 292 (336)
T ss_pred cCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCC
Confidence 4567777766 467777766799999999999998888875544
No 427
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.68 E-value=3.5 Score=37.93 Aligned_cols=112 Identities=20% Similarity=0.204 Sum_probs=71.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCccccccCc-ccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCc
Q 012799 161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGH-KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH 239 (456)
Q Consensus 161 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 239 (456)
++ .+..+..+|.|.-.|.+++..+....... ...+..-.... +| .++.++.+|.++.+|.++++.+......
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-----~G-~i~~g~~~g~~y~ld~~~G~~~W~~~~~ 140 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-----DG-KIYVGSWDGKLYALDASTGTLVWSRNVG 140 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-----CC-eEEEecccceEEEEECCCCcEEEEEecC
Confidence 44 45555788888888988887543111111 11111111111 33 5888999999999999899988877655
Q ss_pred C-ccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeec
Q 012799 240 T-LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG 279 (456)
Q Consensus 240 ~-~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 279 (456)
. ..+..-....++.++.++.+|.+...|..+++.......
T Consensus 141 ~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~ 181 (370)
T COG1520 141 GSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYET 181 (370)
T ss_pred CCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEec
Confidence 5 122233333455666666889999999999988776553
No 428
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.68 E-value=3.6 Score=38.08 Aligned_cols=147 Identities=13% Similarity=0.092 Sum_probs=87.3
Q ss_pred CCeEEEEECCCcEEEEeCCCCcc----eeEEecCCCCEEEEEEcC-----CCCEEEEEeCCCeEEEEeCCCCCCc-----
Q 012799 120 GRQLASGSGDTTVRLWDLNTQTP----MFKCTGHKNWVLCIAWSA-----DGKHLVSGSKAGELQCWDPQTGKPS----- 185 (456)
Q Consensus 120 ~~~l~~~~~d~~v~vwd~~~~~~----~~~~~~~~~~v~~~~~~~-----~~~~l~s~~~dg~i~vwd~~~~~~~----- 185 (456)
...+++|+..|.++||+...... +..-..-..+|..+..-. +...||+ =.-..+.+|.+......
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 46899999999999999754331 111123457788877643 2234444 45567888887322111
Q ss_pred ---cccccCcc--cceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeC
Q 012799 186 ---GNPLSGHK--KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ 259 (456)
Q Consensus 186 ---~~~~~~~~--~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~ 259 (456)
......|. .....+++-|..-...-.++.+-+.||.+.+++-+.-.....+.. .--...+.+.+.. .|++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 01122222 223444444433222346888899999999999776554444433 2222345666655 8888888
Q ss_pred CCcEEEEEC
Q 012799 260 DCTIKVWET 268 (456)
Q Consensus 260 dg~i~iwd~ 268 (456)
+..+..|..
T Consensus 195 s~~l~~Yky 203 (418)
T PF14727_consen 195 SWTLECYKY 203 (418)
T ss_pred ceeEEEecH
Confidence 888888865
No 429
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.59 E-value=2.7 Score=38.56 Aligned_cols=143 Identities=13% Similarity=0.123 Sum_probs=74.7
Q ss_pred ccEEEEEECCCCCeEEEEE-----------CCC-cEEEEeCCC--Cc--ceeEEecCCCCEEEEEEcCCCCEEEEEeCCC
Q 012799 109 EAVLSVAFSPDGRQLASGS-----------GDT-TVRLWDLNT--QT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAG 172 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~-----------~d~-~v~vwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 172 (456)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+.........+++.+++ +++ +....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 3456899999999777642 123 677775432 22 223333344556889999888 444 44443
Q ss_pred eEEEEeCCCC-----CC--ccccccC----cccceEEEEecccccCCCCCEEEEEeCC-------------------CcE
Q 012799 173 ELQCWDPQTG-----KP--SGNPLSG----HKKWITGISWEPVHLNAPCRRFVSASKD-------------------GDA 222 (456)
Q Consensus 173 ~i~vwd~~~~-----~~--~~~~~~~----~~~~v~~~~~~~~~~~~~~~~l~~~~~d-------------------g~i 222 (456)
..++.|.... +. +...+.. +......+.|.| +|.+.++-+.. |.|
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-----DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-----DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-----CCCEEEecccCCCceeccCCCccCcccccCceE
Confidence 3334454321 11 1111111 123466778877 77766654421 345
Q ss_pred EEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeC
Q 012799 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259 (456)
Q Consensus 223 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 259 (456)
.-++...++....-.+ -.....++|+++|.++++..
T Consensus 167 ~r~~pdg~~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 167 FRYNPDGGKLRVVAHG-FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred EEEecCCCeEEEEecC-cCCCccceECCCCCEEEEcc
Confidence 5555544443222222 23345778888774444433
No 430
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.44 E-value=0.04 Score=53.69 Aligned_cols=169 Identities=14% Similarity=0.199 Sum_probs=104.9
Q ss_pred ccccCCcccEEEEEECCC-CCeEEEEECCCcEEEEeCCC--Ccce-----eEEecCCCCEEEEEEcC---CCCEEEEEeC
Q 012799 102 ATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNT--QTPM-----FKCTGHKNWVLCIAWSA---DGKHLVSGSK 170 (456)
Q Consensus 102 ~~l~~h~~~V~~~~~s~~-~~~l~~~~~d~~v~vwd~~~--~~~~-----~~~~~~~~~v~~~~~~~---~~~~l~s~~~ 170 (456)
..++|..+.|-.++|... ...++ -.-|.+.||+++- |+.. .....-...+.-+.|.| +.-++..+-.
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 456788889999988642 12222 2335688898752 3322 22223344456667766 6677888888
Q ss_pred CCeEEEEeCCCCCCccccccCcccceEEEEeccc------ccCCCCCEEEEEeCCCcEEEEECC-----CCeEEEEecCc
Q 012799 171 AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPV------HLNAPCRRFVSASKDGDARIWDVS-----LRKCVICLSGH 239 (456)
Q Consensus 171 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~ 239 (456)
++.+++.+++.... ..+.+|...+..++|... ..++||..|+.+..||.++.|.+. ...|+...+.|
T Consensus 204 ~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkph 281 (1283)
T KOG1916|consen 204 GGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPH 281 (1283)
T ss_pred CCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCC
Confidence 89999988776543 356668888877766442 245699999999999998888753 33445555666
Q ss_pred C-ccEEEEEeCCC-------C---eEEEEe-CCCcEEEEECCCCeEE
Q 012799 240 T-LAVTCVKWGGD-------G---VIYTGS-QDCTIKVWETTQGKLI 274 (456)
Q Consensus 240 ~-~~v~~~~~~~~-------~---~l~~~~-~dg~i~iwd~~~~~~~ 274 (456)
. .+-.|.-++.+ + .+++++ .+..+++|.....+++
T Consensus 282 d~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 282 DKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 5 34334334321 1 233333 3456888887666655
No 431
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.31 E-value=3.1 Score=35.79 Aligned_cols=135 Identities=19% Similarity=0.134 Sum_probs=78.2
Q ss_pred CEEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEE-C
Q 012799 152 WVLCIAWSADGKHLVSGS---KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD-V 227 (456)
Q Consensus 152 ~v~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd-~ 227 (456)
.+.+.+++++++.++... ....+.++... ........ ...+....|.+ ++...+....+...+++. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~--g~~l~~PS~d~-----~g~~W~v~~~~~~~~~~~~~ 95 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLT--GGSLTRPSWDP-----DGWVWTVDDGSGGVRVVRDS 95 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeecc--CCccccccccC-----CCCEEEEEcCCCceEEEEec
Confidence 688999999999887765 23345555543 33222222 23667778877 766666666666666663 2
Q ss_pred CCCeEE-EEe--cCcCccEEEEEeCCCC-eEEEEe---CCCcEEEEECC---CC------eEEEEeecCCcceEEEEecC
Q 012799 228 SLRKCV-ICL--SGHTLAVTCVKWGGDG-VIYTGS---QDCTIKVWETT---QG------KLIRELKGHGHWVNSLALST 291 (456)
Q Consensus 228 ~~~~~~-~~~--~~~~~~v~~~~~~~~~-~l~~~~---~dg~i~iwd~~---~~------~~~~~~~~~~~~i~~~~~~~ 291 (456)
..++.. ... ......|+.+.++||| +++... .++.|.+--+. .+ ............+..+.|.+
T Consensus 96 ~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 96 ASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred CCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 232221 111 1112289999999999 544433 35667665432 22 11122223356788899988
Q ss_pred ccee
Q 012799 292 EYAL 295 (456)
Q Consensus 292 ~~~~ 295 (456)
+..+
T Consensus 176 ~~~L 179 (253)
T PF10647_consen 176 DSTL 179 (253)
T ss_pred CCEE
Confidence 7543
No 432
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.25 E-value=2 Score=39.13 Aligned_cols=152 Identities=13% Similarity=0.169 Sum_probs=90.1
Q ss_pred EEEEECCCCCeEEEEECCCcEEEEeCCCC---cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799 112 LSVAFSPDGRQLASGSGDTTVRLWDLNTQ---TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (456)
Q Consensus 112 ~~~~~s~~~~~l~~~~~d~~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 188 (456)
+.+-|....+.|++. ..|.+.=|-+... -++.-.....++|.++.|++|.+.||+--.+.+|.+++....+.....
T Consensus 26 ngvFfDDaNkqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 345555444444333 3344555544322 223333346779999999999999999999999999998544432211
Q ss_pred c---cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC-CeEEEEecCcCccEEEEEeCCCC--eEEEEe-CCC
Q 012799 189 L---SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDG--VIYTGS-QDC 261 (456)
Q Consensus 189 ~---~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~-~dg 261 (456)
. ......|.+..|.. + .-++..+..| +-+|.... ...++..+.|+..|.-..|.++. .+++.+ ..+
T Consensus 105 ~~~ck~k~~~IlGF~W~~-----s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n 177 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTS-----S-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLEN 177 (657)
T ss_pred HHHhccCcceeEEEEEec-----C-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecccccc
Confidence 1 22234588888876 3 3455555444 55665433 23344556778888888898877 333333 444
Q ss_pred cEEEEECCCC
Q 012799 262 TIKVWETTQG 271 (456)
Q Consensus 262 ~i~iwd~~~~ 271 (456)
.+.=+.++++
T Consensus 178 ~lnpf~~~~~ 187 (657)
T KOG2377|consen 178 VLNPFHFRAG 187 (657)
T ss_pred ccccEEEeec
Confidence 5555555544
No 433
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.21 E-value=3.5 Score=37.84 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=14.3
Q ss_pred ccEeEEEECCCCCEEEEEE
Q 012799 361 QLVNHVYFSPDGQWVASAS 379 (456)
Q Consensus 361 ~~v~~~~~sp~~~~l~s~~ 379 (456)
.....++|.|||.+.++-+
T Consensus 124 ~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 124 HSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred ccccCceECCCCCEEEecc
Confidence 4477899999998766544
No 434
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.02 E-value=0.5 Score=47.87 Aligned_cols=140 Identities=12% Similarity=0.100 Sum_probs=88.6
Q ss_pred ccEEEEEECCCCCeEEEEE--CCCcEEEEeCCCCcce-----eEE------ecCCCCEEEEEEcCCC-CEEEEEeCCCeE
Q 012799 109 EAVLSVAFSPDGRQLASGS--GDTTVRLWDLNTQTPM-----FKC------TGHKNWVLCIAWSADG-KHLVSGSKAGEL 174 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~--~d~~v~vwd~~~~~~~-----~~~------~~~~~~v~~~~~~~~~-~~l~s~~~dg~i 174 (456)
-+|..+...+|+...++.. .+-.|..||+.+-..- .-+ ........++.|+|.- ...+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 3566666777776555443 3337888998653211 111 1233456788898842 345667788999
Q ss_pred EEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC----cCccEEEEEeCC
Q 012799 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG----HTLAVTCVKWGG 250 (456)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~ 250 (456)
++..+......... .......++++|+| .|..+++|-..|++.-|...-. ....+.+ ....|.+++|..
T Consensus 181 ~V~~~~~~~~~v~s-~p~t~~~Tav~WSp-----rGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTS-FPVTNSQTAVLWSP-----RGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhcc-cCcccceeeEEecc-----ccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEec
Confidence 98877644333211 23456789999999 9999999999999998865422 2222211 247799999987
Q ss_pred CCeEE
Q 012799 251 DGVIY 255 (456)
Q Consensus 251 ~~~l~ 255 (456)
...++
T Consensus 254 t~efl 258 (1405)
T KOG3630|consen 254 TQEFL 258 (1405)
T ss_pred ceeEE
Confidence 76333
No 435
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.95 E-value=3.6 Score=35.13 Aligned_cols=120 Identities=15% Similarity=0.106 Sum_probs=73.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC
Q 012799 151 NWVLCIAWSADGKHLVSGSKAG--ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228 (456)
Q Consensus 151 ~~v~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 228 (456)
.-...+.|..+|.++-+.+.-| .|+.+|+.+++..........-.-..+... ++..+.-.=.++...+||..
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~------~d~l~qLTWk~~~~f~yd~~ 118 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL------GDKLYQLTWKEGTGFVYDPN 118 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE------TTEEEEEESSSSEEEEEETT
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE------CCEEEEEEecCCeEEEEccc
Confidence 3356788877888888887766 699999999986542222222222333332 22333344457899999999
Q ss_pred CCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEee
Q 012799 229 LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK 278 (456)
Q Consensus 229 ~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 278 (456)
+.+.+.++.- .+.=..++...+ .|+.+.....++++|..+.+..+.+.
T Consensus 119 tl~~~~~~~y-~~EGWGLt~dg~-~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 119 TLKKIGTFPY-PGEGWGLTSDGK-RLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp TTEEEEEEE--SSS--EEEECSS-CEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred cceEEEEEec-CCcceEEEcCCC-EEEEECCccceEEECCcccceEEEEE
Confidence 9988887753 345566664433 67777777889999998877766654
No 436
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.82 E-value=1.2 Score=43.14 Aligned_cols=112 Identities=13% Similarity=0.223 Sum_probs=70.4
Q ss_pred ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe-cCCCCEEEEEEc--CCCCEEEEEeCCCeEEEEeCCC----
Q 012799 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWS--ADGKHLVSGSKAGELQCWDPQT---- 181 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~s~~~dg~i~vwd~~~---- 181 (456)
....-+.-+.-++.-++-+....+.|||...+.....-. ...+.|.++.|. |+++.+++.|..+.|.+|....
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344455555555544444445589999998876443322 457889999997 5899999999999999996431
Q ss_pred -CCCc----cc-cccCcc-cceEEEEecccccCCCCCEEEEEeCCCcEEEEEC
Q 012799 182 -GKPS----GN-PLSGHK-KWITGISWEPVHLNAPCRRFVSASKDGDARIWDV 227 (456)
Q Consensus 182 -~~~~----~~-~~~~~~-~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 227 (456)
..+. .. .+..+. .+|.+..|.+ +|..++.+| +.+.|+|-
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-----~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLK-----DGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEec-----CCeEEEEeC--CEEEEECC
Confidence 1111 10 112233 5677888877 664444333 56888764
No 437
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.47 E-value=2.4 Score=31.68 Aligned_cols=116 Identities=10% Similarity=0.007 Sum_probs=72.5
Q ss_pred EEECCCCCeEEEEECCCcEEEEeCCCCc--------ceeEEecCCCCEEEEEEcC-----CCCEEEEEeCCCeEEEEeCC
Q 012799 114 VAFSPDGRQLASGSGDTTVRLWDLNTQT--------PMFKCTGHKNWVLCIAWSA-----DGKHLVSGSKAGELQCWDPQ 180 (456)
Q Consensus 114 ~~~s~~~~~l~~~~~d~~v~vwd~~~~~--------~~~~~~~~~~~v~~~~~~~-----~~~~l~s~~~dg~i~vwd~~ 180 (456)
-.|......|++++.-|+|.|++..... .+..+. -...|++++-.+ +...|+.|+. ..+..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence 4566566678888888999999865332 233333 556778776544 3456666655 579999999
Q ss_pred CCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 012799 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC 235 (456)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 235 (456)
.+..+. .+.-...|.++.+-...- ...-++..+.+..|.-||.+..+...+
T Consensus 82 ~N~d~F--yke~~DGvn~i~~g~~~~--~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 82 NNSDLF--YKEVPDGVNAIVIGKLGD--IPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cCchhh--hhhCccceeEEEEEecCC--CCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 887653 445557788877754321 223445555556777777665554443
No 438
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.41 E-value=0.035 Score=54.12 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=48.5
Q ss_pred EEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEE-----------EcCCCCEEEEEeCCCeEEEEeC
Q 012799 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA-----------WSADGKHLVSGSKAGELQCWDP 179 (456)
Q Consensus 111 V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~s~~~dg~i~vwd~ 179 (456)
|.-+-|.++.-++..+-.++.|++.+.++... ..+.+|..+++.++ .+|||+.+++++.||.++.|.+
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 33334444666777777888999887765433 33445776666554 5899999999999999998876
Q ss_pred C
Q 012799 180 Q 180 (456)
Q Consensus 180 ~ 180 (456)
.
T Consensus 265 y 265 (1283)
T KOG1916|consen 265 Y 265 (1283)
T ss_pred e
Confidence 4
No 439
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.32 E-value=2.3 Score=41.30 Aligned_cols=70 Identities=14% Similarity=0.304 Sum_probs=47.1
Q ss_pred CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (456)
Q Consensus 107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 179 (456)
...-++++.-+|.|+-++.++.||+|++|+.........+. ...+-..+.|...| |++...|..+.-|.-
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKE 82 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeec
Confidence 45667888999999999999999999999986544322221 22334445564444 555666666666753
No 440
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.25 E-value=6.8 Score=36.19 Aligned_cols=145 Identities=17% Similarity=0.154 Sum_probs=82.4
Q ss_pred cEEEEEECCCCCeEEEEECCCcE-EEEeCCCCcce--eEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC--
Q 012799 110 AVLSVAFSPDGRQLASGSGDTTV-RLWDLNTQTPM--FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP-- 184 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~~~~~d~~v-~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-- 184 (456)
....+..+++|.+++.+. .|.+ +-|| .+... ..-......++.+.|.+++..++++ .+|.+. +....++.
T Consensus 240 sf~~v~~~~dG~~~~vg~-~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~ 314 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSS-RGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEE 314 (398)
T ss_pred ceeeEEEcCCCCEEEEEC-CccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccc
Confidence 345567778888777764 4433 3343 23221 1112345678999999998877665 556543 33333431
Q ss_pred ---cccc-ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe---cCcCccEEEEEeCCCCeEEEE
Q 012799 185 ---SGNP-LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SGHTLAVTCVKWGGDGVIYTG 257 (456)
Q Consensus 185 ---~~~~-~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~l~~~ 257 (456)
.... .......+.++.|.+ ++. ++.++..|.+.... ..++.-... ..-......+.|.+++..++.
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~-----d~~-~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~ 387 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRS-----KKE-AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL 387 (398)
T ss_pred ccceeecccCCCCcceEEEEEcC-----CCc-EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE
Confidence 1101 111223477888776 544 55566667666653 333332222 223456889998887777888
Q ss_pred eCCCcEEEE
Q 012799 258 SQDCTIKVW 266 (456)
Q Consensus 258 ~~dg~i~iw 266 (456)
+.+|.|.-|
T Consensus 388 G~~G~il~~ 396 (398)
T PLN00033 388 GNDGVLLRY 396 (398)
T ss_pred eCCcEEEEe
Confidence 888887655
No 441
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.23 E-value=10 Score=38.11 Aligned_cols=78 Identities=22% Similarity=0.224 Sum_probs=54.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------CCC--ccc--------cccCcccceEEEEecccccCCCCC
Q 012799 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQT---------GKP--SGN--------PLSGHKKWITGISWEPVHLNAPCR 211 (456)
Q Consensus 151 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~--~~~--------~~~~~~~~v~~~~~~~~~~~~~~~ 211 (456)
-.|..+.++|+|++++..|..|.+.+.=.+. |+. .++ ....+...|..+.|+|.. .++.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s--~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWS--ESDS 162 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCC--CCCC
Confidence 4688999999999999998877544432221 111 110 112445678999999953 3568
Q ss_pred EEEEEeCCCcEEEEECCCC
Q 012799 212 RFVSASKDGDARIWDVSLR 230 (456)
Q Consensus 212 ~l~~~~~dg~i~iwd~~~~ 230 (456)
+|++-..|+.+++||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 9999999999999999643
No 442
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.00 E-value=12 Score=38.13 Aligned_cols=136 Identities=12% Similarity=0.025 Sum_probs=77.4
Q ss_pred cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCC-C
Q 012799 131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNA-P 209 (456)
Q Consensus 131 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~ 209 (456)
.||+++-. .....+. ....++..+.+.+...++.++.++.+...++..+.............|.|+.++|..-.+ .
T Consensus 471 ~iRl~ss~--~~~~~W~-~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~ 547 (1096)
T KOG1897|consen 471 SIRLVSSA--GLRSEWR-PPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNK 547 (1096)
T ss_pred cEEEEcch--hhhhccc-CCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCc
Confidence 46666643 2233333 234455555555666777777777787777776653322233445789999999864222 2
Q ss_pred CCEEEEEeCCCcEEEEECC-CCeEEEE--ecC--cCccEEEEEeCCCC-eEEEEeCCCcEEEEECC
Q 012799 210 CRRFVSASKDGDARIWDVS-LRKCVIC--LSG--HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT 269 (456)
Q Consensus 210 ~~~l~~~~~dg~i~iwd~~-~~~~~~~--~~~--~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~ 269 (456)
.+.++.|.++..+.+.-.- ....+.. +.+ -...|.-..+-.+. +|+++..||.+.-|-+.
T Consensus 548 s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 548 SRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred ceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEE
Confidence 3477888887765554332 2222111 111 12334445555544 89999999998766443
No 443
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.79 E-value=1.2 Score=37.33 Aligned_cols=67 Identities=15% Similarity=0.220 Sum_probs=50.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEe-------c-------CcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEE
Q 012799 209 PCRRFVSASKDGDARIWDVSLRKCVICL-------S-------GHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLI 274 (456)
Q Consensus 209 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 274 (456)
++.++++.+.+|.+++||+.+++.+..- . .....|..+.++.+|..++.-.+|..+.||..-+.-+
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~~W~ 100 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLGCWI 100 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccceeE
Confidence 6789999999999999999988765432 1 2456788999998885555556788999987765443
Q ss_pred E
Q 012799 275 R 275 (456)
Q Consensus 275 ~ 275 (456)
.
T Consensus 101 ~ 101 (219)
T PF07569_consen 101 R 101 (219)
T ss_pred E
Confidence 3
No 444
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.75 E-value=1.5 Score=39.98 Aligned_cols=95 Identities=17% Similarity=0.276 Sum_probs=69.1
Q ss_pred CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce----eEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 012799 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM----FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (456)
Q Consensus 107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 182 (456)
..++|.++.||+|.+.||.--.+++|.+++....+.. .+.+.....|....|+.+ .-+|..+..| +-+|.+...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 4669999999999999999999999999998544332 233445566889999855 5666665554 677776655
Q ss_pred CCccccccCcccceEEEEecc
Q 012799 183 KPSGNPLSGHKKWITGISWEP 203 (456)
Q Consensus 183 ~~~~~~~~~~~~~v~~~~~~~ 203 (456)
+...+....|...|.-..|.+
T Consensus 143 krslRlVks~~~nvnWy~yc~ 163 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCP 163 (657)
T ss_pred hhhhhhhhhcccCccEEEEcc
Confidence 544445667777777777777
No 445
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.62 E-value=5.9 Score=41.47 Aligned_cols=32 Identities=19% Similarity=0.358 Sum_probs=26.8
Q ss_pred cccEEEEEECCCCCeEEEEECCCcEEEEeCCC
Q 012799 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT 139 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~ 139 (456)
......++|+|...++|.+...|.|+++-...
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccc
Confidence 34566789999999999999999999997543
No 446
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.43 E-value=3.1 Score=34.09 Aligned_cols=56 Identities=18% Similarity=0.269 Sum_probs=39.2
Q ss_pred CeEEEEECCCcEEEEeCCC--CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCC------eEEEE
Q 012799 121 RQLASGSGDTTVRLWDLNT--QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG------ELQCW 177 (456)
Q Consensus 121 ~~l~~~~~d~~v~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg------~i~vw 177 (456)
+.|+.+...+.|.+|++.. .+.+.++. .-+.|..+.++..|++|+|--.+. .+|+|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 3444445667899999883 34455555 448899999999999999964332 56665
No 447
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.32 E-value=8.5 Score=38.10 Aligned_cols=145 Identities=10% Similarity=0.082 Sum_probs=85.4
Q ss_pred CCeEEEEECCCcEEEEeCCCCccee------EEe----------------cCCCCEEEEEEcC--CCCEEEEEeCCCeEE
Q 012799 120 GRQLASGSGDTTVRLWDLNTQTPMF------KCT----------------GHKNWVLCIAWSA--DGKHLVSGSKAGELQ 175 (456)
Q Consensus 120 ~~~l~~~~~d~~v~vwd~~~~~~~~------~~~----------------~~~~~v~~~~~~~--~~~~l~s~~~dg~i~ 175 (456)
+++++.+. .+.|.||+.+.-.... .+. .....|+.|.... +...|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 66777765 6689999876422111 110 0122355554443 556889999999999
Q ss_pred EEeCCC-------C----C-------CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC--eE-EE
Q 012799 176 CWDPQT-------G----K-------PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR--KC-VI 234 (456)
Q Consensus 176 vwd~~~-------~----~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~-~~ 234 (456)
+|..++ . + ............+++++++.. ...+++|+++....|.||-.... +. ..
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~---~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~ 204 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDY---KKSRLIAVSSNSQEVTVFAFALVDERFYHV 204 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEec---CcceEEEEecCCceEEEEEEeccccccccc
Confidence 996531 0 0 000111223446788888721 15577888888788888765432 11 11
Q ss_pred EecCcCccEEEEEeCCC-----C--eEEEEeCCCcEEEEEC
Q 012799 235 CLSGHTLAVTCVKWGGD-----G--VIYTGSQDCTIKVWET 268 (456)
Q Consensus 235 ~~~~~~~~v~~~~~~~~-----~--~l~~~~~dg~i~iwd~ 268 (456)
.-..+...|.+++|.++ | .+++++-.|.+.+|++
T Consensus 205 ~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 205 PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 11125566888888653 3 5777888999998877
No 448
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.09 E-value=2.8 Score=38.65 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=57.9
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCC---------------CC
Q 012799 147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAP---------------CR 211 (456)
Q Consensus 147 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------~~ 211 (456)
......+.++..+|++++.|+...=|.|.++|+.++..+. ..++..+. .+.|.......+ ..
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvr-mWKGYRdA--qc~wi~~~~~~~~~~~~~~~~~~~~~~~l 380 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVR-MWKGYRDA--QCGWIEVPEEGDRDRSNSNSPKSSSRFAL 380 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhh-hhccCccc--eEEEEEeecccccccccccccCCCCcceE
Confidence 3455678999999999988888778999999999887665 45554432 122221110000 11
Q ss_pred -EEEEEeCCCcEEEEECCCCeEEEEec
Q 012799 212 -RFVSASKDGDARIWDVSLRKCVICLS 237 (456)
Q Consensus 212 -~l~~~~~dg~i~iwd~~~~~~~~~~~ 237 (456)
+++.+-.-|.|-||+++.+..+..+.
T Consensus 381 ~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 381 FLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 23345668899999998877666553
No 449
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.04 E-value=9.8 Score=35.01 Aligned_cols=152 Identities=17% Similarity=0.143 Sum_probs=86.4
Q ss_pred CCCCeEEEEECCCcEEEEeCCCCcceeEEecC--CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccc
Q 012799 118 PDGRQLASGSGDTTVRLWDLNTQTPMFKCTGH--KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKW 195 (456)
Q Consensus 118 ~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 195 (456)
-+++ +..+..+|.|.-.|.+++..+.....- ...+..-.+..+|+ ++.++.+|.+..+|.++|+........ . .
T Consensus 67 ~dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~-~-~ 142 (370)
T COG1520 67 GDGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVG-G-S 142 (370)
T ss_pred eCCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecC-C-C
Confidence 3554 444577888888888888766433211 12222223333665 778888998999998888765422221 1 1
Q ss_pred eEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcC---ccEEEEEeCCCCeEEEEeC--CCcEEEEECCC
Q 012799 196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT---LAVTCVKWGGDGVIYTGSQ--DCTIKVWETTQ 270 (456)
Q Consensus 196 v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~l~~~~~--dg~i~iwd~~~ 270 (456)
..+...... ....+..++.++.+...|..+++......... ..+..-....++.++.+.. ++.+.-.|..+
T Consensus 143 ---~~~~~~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~ 218 (370)
T COG1520 143 ---PYYASPPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAED 218 (370)
T ss_pred ---eEEecCcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccC
Confidence 222111111 22344444477999999988888766643221 1111111123446666666 66788888888
Q ss_pred CeEEEEe
Q 012799 271 GKLIREL 277 (456)
Q Consensus 271 ~~~~~~~ 277 (456)
|......
T Consensus 219 G~~~w~~ 225 (370)
T COG1520 219 GTLKWSQ 225 (370)
T ss_pred CcEeeee
Confidence 8777664
No 450
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.95 E-value=0.024 Score=51.35 Aligned_cols=125 Identities=16% Similarity=0.223 Sum_probs=80.6
Q ss_pred EEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhh
Q 012799 245 CVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK 323 (456)
Q Consensus 245 ~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (456)
...|.+++ .++.++.+..+..||-. ++...... .......++|..++
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkeg------------------------------ 86 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEG------------------------------ 86 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhcccc------------------------------
Confidence 34566666 78888888889999854 33333222 11222233333321
Q ss_pred ccCCCCCEEEEEeCCCcEEEEecCCCCCCcccccc-ccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEeccc
Q 012799 324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV 402 (456)
Q Consensus 324 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 402 (456)
+..++.+-..+.+++||+.+.........+ |.... +.|++.+..++.|...|.+.|++..+.+.+-..-.|.
T Consensus 87 -----dvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~ 159 (615)
T KOG2247|consen 87 -----DVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQ 159 (615)
T ss_pred -----chhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccc
Confidence 223566777889999997665432222222 22222 7899999999999999999999988777666655588
Q ss_pred ccEEEE
Q 012799 403 GPVYQI 408 (456)
Q Consensus 403 ~~v~~i 408 (456)
..+.++
T Consensus 160 RRgtq~ 165 (615)
T KOG2247|consen 160 RRGTQI 165 (615)
T ss_pred cceeEE
Confidence 889988
No 451
>PRK13684 Ycf48-like protein; Provisional
Probab=91.89 E-value=9.4 Score=34.49 Aligned_cols=150 Identities=11% Similarity=0.066 Sum_probs=78.3
Q ss_pred ccceEEEEecccccCCCCCEEEEEeCCCcEEE-EECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCC
Q 012799 193 KKWITGISWEPVHLNAPCRRFVSASKDGDARI-WDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQG 271 (456)
Q Consensus 193 ~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 271 (456)
...+.++.+.| ++.++ ..+..|.+.. +|-....-..........++++.+.+++.++..+..|.+++=....+
T Consensus 172 ~g~~~~i~~~~-----~g~~v-~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G 245 (334)
T PRK13684 172 AGVVRNLRRSP-----DGKYV-AVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDL 245 (334)
T ss_pred cceEEEEEECC-----CCeEE-EEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCC
Confidence 45677888777 65554 4444565543 22221111222233456788999999885555667787653233444
Q ss_pred eEEEEeecC----CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecC
Q 012799 272 KLIRELKGH----GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA 347 (456)
Q Consensus 272 ~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 347 (456)
..-.....+ ...+..+.+.++ +. ++.++.+|.+..=. .
T Consensus 246 ~sW~~~~~~~~~~~~~l~~v~~~~~------------------------------------~~-~~~~G~~G~v~~S~-d 287 (334)
T PRK13684 246 ESWSKPIIPEITNGYGYLDLAYRTP------------------------------------GE-IWAGGGNGTLLVSK-D 287 (334)
T ss_pred CccccccCCccccccceeeEEEcCC------------------------------------CC-EEEEcCCCeEEEeC-C
Confidence 332222111 123555666554 22 45555667655422 2
Q ss_pred CCCCCcccc---ccccccEeEEEECCCCCEEEEEECCCcEEEEe
Q 012799 348 VSKQPKTRM---TGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388 (456)
Q Consensus 348 ~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd 388 (456)
.+.. .... ..-......+.|..+++.+++ +..|.|.-|+
T Consensus 288 ~G~t-W~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~ 329 (334)
T PRK13684 288 GGKT-WEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYV 329 (334)
T ss_pred CCCC-CeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEec
Confidence 2222 1111 122235777887766666555 4678887775
No 452
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.88 E-value=1.8 Score=36.25 Aligned_cols=67 Identities=9% Similarity=0.180 Sum_probs=49.9
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCccc------cc-------cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEE
Q 012799 329 PERLVSGSDDFTMFLWEPAVSKQPKTR------MT-------GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395 (456)
Q Consensus 329 ~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~-------~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~ 395 (456)
+.++++-+.+|.+++||+.+.+..... +. .....|..+.++.+|.-|++-+ +|..+.|+..-+.-+
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~~W~ 100 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLGCWI 100 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccceeE
Confidence 667999999999999998876533221 22 3556789999999998877765 588999997655544
Q ss_pred E
Q 012799 396 A 396 (456)
Q Consensus 396 ~ 396 (456)
.
T Consensus 101 ~ 101 (219)
T PF07569_consen 101 R 101 (219)
T ss_pred E
Confidence 4
No 453
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=91.58 E-value=18 Score=36.99 Aligned_cols=83 Identities=20% Similarity=0.119 Sum_probs=54.3
Q ss_pred ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEE---ecccccEEEEEeeeeeeecCCCCceeeecccccccceeE
Q 012799 361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF---RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW 437 (456)
Q Consensus 361 ~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (456)
+.|.+++...-+.+++..-.||+|.++|-.+.+.+... ......|.++ +. ..|.+| ..+ ....++|
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~-~~--~Gf~fp-----~~~---~~~~vaf 328 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSL-FQ--AGFHFP-----CIQ---PPLHVAF 328 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccc-cc--cccccc-----cCC---CCceEEE
Confidence 45777777777888999999999999999888776555 1122334443 00 011111 011 3344589
Q ss_pred ecCCCeEEEeeCCCceE
Q 012799 438 SADSRLLLSGSKDSTLK 454 (456)
Q Consensus 438 s~dg~~l~s~s~Dg~v~ 454 (456)
||.+..++.-..||.+.
T Consensus 329 SPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 329 SPTMCSLVQIDEDGKTK 345 (753)
T ss_pred CcccceEEEEecCCCce
Confidence 99999999999888743
No 454
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.24 E-value=1.5 Score=42.87 Aligned_cols=73 Identities=15% Similarity=0.233 Sum_probs=45.7
Q ss_pred CCEEEEEeCCCcEEEEecCC---CCCCcc-----------cc-----------ccccccEeEEEECC----CCCEEEEEE
Q 012799 329 PERLVSGSDDFTMFLWEPAV---SKQPKT-----------RM-----------TGHQQLVNHVYFSP----DGQWVASAS 379 (456)
Q Consensus 329 ~~~l~~~~~dg~i~iwd~~~---~~~~~~-----------~~-----------~~~~~~v~~~~~sp----~~~~l~s~~ 379 (456)
...++.+..||.+....... ...... .+ ......+..+++++ +..+|++.+
T Consensus 158 ~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~ 237 (547)
T PF11715_consen 158 EANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLS 237 (547)
T ss_dssp SSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEE
T ss_pred CCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEe
Confidence 44588888999988887553 111000 00 01123456666766 778999999
Q ss_pred CCCcEEEEeCCCCeEEEEEecc
Q 012799 380 FDKSIKLWNGTTGKFVAVFRGH 401 (456)
Q Consensus 380 ~dg~i~iwd~~~~~~~~~~~~~ 401 (456)
.|+++|+||+.+++++......
T Consensus 238 ~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 238 RDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TTSEEEEEETTTTCEEEEEETT
T ss_pred CCCeEEEEECCCCeEEEEeccc
Confidence 9999999999999997766433
No 455
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.23 E-value=2.8 Score=39.02 Aligned_cols=88 Identities=17% Similarity=0.167 Sum_probs=47.4
Q ss_pred cEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCC
Q 012799 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS 441 (456)
Q Consensus 362 ~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 441 (456)
.|..+..++.|..++-.|.+|.+.++=.+..-.-..++.....|+|=.|. ..+..+.. ...--+..++|+|+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~------i~~~~fts-s~~ltl~Qa~WHP~S 177 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTP------VAERFFTS-STSLTLKQAAWHPSS 177 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeec------ccceeecc-CCceeeeeccccCCc
Confidence 47788899999999999999966555322211122233222223332111 00000000 011112223899986
Q ss_pred ---CeEEEeeCCCceEEC
Q 012799 442 ---RLLLSGSKDSTLKVT 456 (456)
Q Consensus 442 ---~~l~s~s~Dg~v~iW 456 (456)
..|..-+.|.++||.
T Consensus 178 ~~D~hL~iL~sdnviRiy 195 (741)
T KOG4460|consen 178 ILDPHLVLLTSDNVIRIY 195 (741)
T ss_pred cCCceEEEEecCcEEEEE
Confidence 578888889999873
No 456
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.07 E-value=3.3 Score=33.19 Aligned_cols=35 Identities=11% Similarity=0.308 Sum_probs=27.9
Q ss_pred cceEEEEecccccCCC-CCEEEEEeCCCcEEEEECC
Q 012799 194 KWITGISWEPVHLNAP-CRRFVSASKDGDARIWDVS 228 (456)
Q Consensus 194 ~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~ 228 (456)
..+.+++|+|.....+ +-.|++.+.++.|.+|...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 3789999999777665 4467778889999999755
No 457
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.18 E-value=22 Score=35.80 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=49.7
Q ss_pred cceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC----------CeE--E-EEe--------cCcCccEEEEEeCCCC
Q 012799 194 KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL----------RKC--V-ICL--------SGHTLAVTCVKWGGDG 252 (456)
Q Consensus 194 ~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~--~-~~~--------~~~~~~v~~~~~~~~~ 252 (456)
-.|..+..+| +|.+++..|..|. .|..+.. ++. . +++ ..+...|..+.|+|.+
T Consensus 85 f~v~~i~~n~-----~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s 158 (717)
T PF10168_consen 85 FEVHQISLNP-----TGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWS 158 (717)
T ss_pred eeEEEEEECC-----CCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCC
Confidence 3577788777 8999999888664 4433321 111 1 111 1345679999999853
Q ss_pred ----eEEEEeCCCcEEEEECCCC
Q 012799 253 ----VIYTGSQDCTIKVWETTQG 271 (456)
Q Consensus 253 ----~l~~~~~dg~i~iwd~~~~ 271 (456)
.|++-..|+++|+||+...
T Consensus 159 ~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 159 ESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCCeEEEEecCCEEEEEecCCC
Confidence 8999999999999999753
No 458
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=89.84 E-value=17 Score=33.85 Aligned_cols=112 Identities=15% Similarity=0.143 Sum_probs=63.4
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCcc---ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC--e----
Q 012799 161 DGKHLVSGSKAGELQCWDPQTGKPSG---NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR--K---- 231 (456)
Q Consensus 161 ~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~---- 231 (456)
+...|++|+..|.++||+...+.... .....-..+|..+..-..........||+ =.-..+.+|.+... .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 34689999999999999996544221 01223456788887655322223334444 34466777776211 1
Q ss_pred ---EEEEecCcC--ccEEEEEeCC----C--CeEEEEeCCCcEEEEECCCCeE
Q 012799 232 ---CVICLSGHT--LAVTCVKWGG----D--GVIYTGSQDCTIKVWETTQGKL 273 (456)
Q Consensus 232 ---~~~~~~~~~--~~v~~~~~~~----~--~~l~~~~~dg~i~iwd~~~~~~ 273 (456)
.+..+..|. .....+++.| . ..+.+-+.||.+.+|+-+.-..
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f 167 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF 167 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE
Confidence 112222222 2222233322 2 2788899999999999765443
No 459
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=89.70 E-value=8.9 Score=33.43 Aligned_cols=100 Identities=15% Similarity=0.138 Sum_probs=58.4
Q ss_pred CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe------CCCeEEEEeCCCCCCccccc---cCcccceEEEE
Q 012799 130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS------KAGELQCWDPQTGKPSGNPL---SGHKKWITGIS 200 (456)
Q Consensus 130 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~---~~~~~~v~~~~ 200 (456)
..|++||..+.+-..--.+-.+.|+.+.|..+.++++.|. ....+..||+.+..-....- ..-.++|..+.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence 3699999877554333334567899999986666776664 34568899988765422111 12246677776
Q ss_pred ecccccCCCCC-EEEEEe-C--CCcEEEEECCCCeEE
Q 012799 201 WEPVHLNAPCR-RFVSAS-K--DGDARIWDVSLRKCV 233 (456)
Q Consensus 201 ~~~~~~~~~~~-~l~~~~-~--dg~i~iwd~~~~~~~ 233 (456)
+... ++. ..+.|. . +..|..||-.+...+
T Consensus 96 ~~~~----d~~~~~~aG~~~~g~~~l~~~dGs~W~~i 128 (281)
T PF12768_consen 96 FISN----DGSNFWVAGRSANGSTFLMKYDGSSWSSI 128 (281)
T ss_pred eecc----CCceEEEeceecCCCceEEEEcCCceEec
Confidence 6432 333 333333 2 234666665444433
No 460
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.61 E-value=16 Score=38.52 Aligned_cols=108 Identities=13% Similarity=0.190 Sum_probs=59.1
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEec---ccccCCCCCEEEEEeCCCcEEEEECCCC
Q 012799 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWE---PVHLNAPCRRFVSASKDGDARIWDVSLR 230 (456)
Q Consensus 154 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 230 (456)
..+-+-|.=.+.. .+-|+.+.+|+.+++.... .+.+....|..+..- |.-+.+.=++++..+.--.|.++-+.-.
T Consensus 82 ~~mGiFpeI~RaW-iTiDn~L~lWny~~~~e~~-~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~ 159 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAW-ITIDNNLFLWNYESDNELA-EYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFD 159 (1311)
T ss_pred eeeccchhhcceE-EEeCCeEEEEEcCCCCccc-cccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEec
Confidence 3444444322222 2457899999999865443 345555555555432 2222223445555555556666643211
Q ss_pred e----E-----EEEecCcCccEEEEEeCCCCeEEEEeCCCcE
Q 012799 231 K----C-----VICLSGHTLAVTCVKWGGDGVIYTGSQDCTI 263 (456)
Q Consensus 231 ~----~-----~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i 263 (456)
+ . ...+......|+|+....+|.++-++.||.|
T Consensus 160 ~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~l 201 (1311)
T KOG1900|consen 160 EFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDGNL 201 (1311)
T ss_pred cccCcccccccceeeecCCceEEEEEeccCCcEEEeecCCCE
Confidence 1 0 0222334567888888888877777788743
No 461
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=89.38 E-value=13 Score=32.08 Aligned_cols=151 Identities=10% Similarity=0.009 Sum_probs=87.1
Q ss_pred ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEec--CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 012799 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG--HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 186 (456)
+-+..+.++. ++...+..+.-++|.|+.+......+.. -.+--.++.. .|++...+..|.-+.+.|+.+.....
T Consensus 87 ~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 3445566654 4566666677799999987554333221 2233445554 67888888877778888887654321
Q ss_pred --ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE---EEEecCcCccEEEEEeCCCCeEEEEeCCC
Q 012799 187 --NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC---VICLSGHTLAVTCVKWGGDGVIYTGSQDC 261 (456)
Q Consensus 187 --~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~l~~~~~dg 261 (456)
-........-..++. .|++...+..|+-+.+.|+..... +.... ....+.++..+++..+++....
T Consensus 163 lagrya~~~~d~~~v~I-------SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~e- 233 (370)
T COG5276 163 LAGRYALPGGDTHDVAI-------SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYDE- 233 (370)
T ss_pred eeeeeccCCCCceeEEE-------ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEccc-
Confidence 011111111223333 567888888999999999975432 22221 2236777777777533333333
Q ss_pred cEEEEECCCCe
Q 012799 262 TIKVWETTQGK 272 (456)
Q Consensus 262 ~i~iwd~~~~~ 272 (456)
-+.+-|....+
T Consensus 234 gvlivd~s~~s 244 (370)
T COG5276 234 GVLIVDVSGPS 244 (370)
T ss_pred ceEEEecCCCC
Confidence 36666766554
No 462
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.14 E-value=6.8 Score=40.97 Aligned_cols=154 Identities=14% Similarity=0.277 Sum_probs=90.0
Q ss_pred CcccEEEEEECCC-CCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEc--------CCCCEEEEEeCCCeEEEE
Q 012799 107 HTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS--------ADGKHLVSGSKAGELQCW 177 (456)
Q Consensus 107 h~~~V~~~~~s~~-~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~l~s~~~dg~i~vw 177 (456)
|...=..+-+-|. ++.-+| -|+.+.+|+.+++.....+.+-...|..+..- |.=++++..+.--.|.++
T Consensus 77 ~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~il 154 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVIL 154 (1311)
T ss_pred CcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEE
Confidence 4444444545553 333333 57889999999988888787777777776543 222344444444456665
Q ss_pred eCCCCCCc--ccccc------CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEEC----CCC---e-E---------
Q 012799 178 DPQTGKPS--GNPLS------GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV----SLR---K-C--------- 232 (456)
Q Consensus 178 d~~~~~~~--~~~~~------~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~----~~~---~-~--------- 232 (456)
-+.-.+.. ...+. .....|.++.... +|+.|++ |.|| .+|.+ ..+ + +
T Consensus 155 gV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~-----nGRIF~~-G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ 226 (1311)
T KOG1900|consen 155 GVSFDEFTGELSIFNTSFKISVDGVSVNCITYTE-----NGRIFFA-GRDG--NLYELVYQAEDGWFGSRCRKICLTKSV 226 (1311)
T ss_pred EEEeccccCcccccccceeeecCCceEEEEEecc-----CCcEEEe-ecCC--CEEEEEEeccCchhhcccccccCchhH
Confidence 43322110 00111 2244567777544 6665555 4555 44443 110 0 0
Q ss_pred -------EEEec-CcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCC
Q 012799 233 -------VICLS-GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQ 270 (456)
Q Consensus 233 -------~~~~~-~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~ 270 (456)
+..+. .+..+|..++.+... .+++-+..|+|.+||+..
T Consensus 227 ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 227 LSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred HHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 11223 457799999999876 888999999999999976
No 463
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=88.89 E-value=14 Score=31.64 Aligned_cols=230 Identities=14% Similarity=0.101 Sum_probs=135.6
Q ss_pred cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccc
Q 012799 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL 189 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 189 (456)
.-..++-.|||..-+++...+.|--.|-.+++....--+.......|..-|||..-++-+.. .|.-.|-++.+.....+
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 44668889999988888888888888888888766655666667788888988866654433 56666666655433222
Q ss_pred --cCcccceEEEEecccccCCCCCEEEEEeC---------CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE
Q 012799 190 --SGHKKWITGISWEPVHLNAPCRRFVSASK---------DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG 257 (456)
Q Consensus 190 --~~~~~~v~~~~~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~ 257 (456)
..-........|.+ .|..-+++.. .+.|++|+... ...-..|+..|+| .-++.
T Consensus 142 p~~~a~~nlet~vfD~-----~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq----------G~gpyGi~atpdGsvwyas 206 (353)
T COG4257 142 PLEHADANLETAVFDP-----WGNLWFTGQIGAYGRLDPARNVISVFPAPQ----------GGGPYGICATPDGSVWYAS 206 (353)
T ss_pred ccccCCCcccceeeCC-----CccEEEeeccccceecCcccCceeeeccCC----------CCCCcceEECCCCcEEEEe
Confidence 12234456667776 7777777653 12344444332 2334567788888 44444
Q ss_pred eCCCcEEEEECCCCeEEEEeecC---CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799 258 SQDCTIKVWETTQGKLIRELKGH---GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (456)
Q Consensus 258 ~~dg~i~iwd~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (456)
-.+..|-..|..++.. ..+... ......+..++. +..-++
T Consensus 207 lagnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpi------------------------------------g~~wit 249 (353)
T COG4257 207 LAGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPI------------------------------------GRAWIT 249 (353)
T ss_pred ccccceEEcccccCCc-ceecCCCcccccccccccCcc------------------------------------CcEEEe
Confidence 4555666666655421 111111 111122222222 333555
Q ss_pred EeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCC
Q 012799 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG 392 (456)
Q Consensus 335 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 392 (456)
....+.+..||.....-....+.+....-.++.+...++.-.+--..|.|.-+|-++.
T Consensus 250 twg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 250 TWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred ccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccc
Confidence 5666778888866655444555565556667777776766554445566777776553
No 464
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=88.44 E-value=13 Score=34.97 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=20.7
Q ss_pred ccceeEecCCCeEEEeeCCCceEEC
Q 012799 432 MSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 432 ~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+..++..+..+.|++...+|.|.+|
T Consensus 192 I~~v~~d~~r~~ly~l~~~~~Iq~w 216 (422)
T PF08801_consen 192 IVQVAVDPSRRLLYTLTSDGSIQVW 216 (422)
T ss_dssp EEEEEEETTTTEEEEEESSE-EEEE
T ss_pred eeeEEecCCcCEEEEEeCCCcEEEE
Confidence 5555788888999999999999998
No 465
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=88.39 E-value=16 Score=31.84 Aligned_cols=207 Identities=17% Similarity=0.234 Sum_probs=109.2
Q ss_pred cEEEEEECCCCCeEEEEECCCcEEEEeCC------CC-cceeEEec-----CCCCEEEEEEcCCCC------------EE
Q 012799 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLN------TQ-TPMFKCTG-----HKNWVLCIAWSADGK------------HL 165 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~l 165 (456)
.-+.|+++|.+.+.++....+...+||.. .. ..+.++.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 44689999999888887788899999986 12 22233331 234678888875333 35
Q ss_pred EEEeCCCeEEEEeCCCCCC---cc-cccc-Ccccce-EEEEecccccCCCCCEEEEE-eCCCcEEEEECCCCeEEE--Ee
Q 012799 166 VSGSKAGELQCWDPQTGKP---SG-NPLS-GHKKWI-TGISWEPVHLNAPCRRFVSA-SKDGDARIWDVSLRKCVI--CL 236 (456)
Q Consensus 166 ~s~~~dg~i~vwd~~~~~~---~~-~~~~-~~~~~v-~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~--~~ 236 (456)
+.+++||+|.-|...-+.. .. .... .....| ..+++.... .+.+|..+ -..++|.++|-.=.+... .+
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~---~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTG---GGDYLYAANFRQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecC---CCceEEEeccCCCceEEecCccccccCCCCc
Confidence 7788999999998643332 11 0111 111222 233433211 23444443 346788888743221110 00
Q ss_pred c-----Cc-----------CccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeec--CCcceEEEEecCcceeee
Q 012799 237 S-----GH-----------TLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKG--HGHWVNSLALSTEYALRT 297 (456)
Q Consensus 237 ~-----~~-----------~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~ 297 (456)
. .. .-.|+-..-.+++ .=+.+..-|.|-+||+. |+.++.+.. .-..-..++..|..
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~---- 255 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPES---- 255 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhh----
Confidence 0 00 0011111112221 22234445788889875 566666632 22223445554431
Q ss_pred ccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC
Q 012799 298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK 350 (456)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 350 (456)
.-...+..|+---.||+|..||..++.
T Consensus 256 --------------------------FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 256 --------------------------FGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred --------------------------hCCCCCCeEEeecCCceeEEecCCCCc
Confidence 011235567777789999999976554
No 466
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=88.36 E-value=14 Score=33.41 Aligned_cols=102 Identities=18% Similarity=0.274 Sum_probs=54.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC---c---cccccCcccceEEEEecccccCCCCCEEEEEeCC------
Q 012799 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP---S---GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD------ 219 (456)
Q Consensus 152 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~---~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d------ 219 (456)
..+.|+|.|||+.+++ ...|.|++++ ..+.. + .............++++|.- ..++...++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f-~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDF-ASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTC-CCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceecccc-CCCCEEEEEEEcccCCCCC
Confidence 4678999999877664 6699999999 33332 1 11233445678899999832 2234444444421
Q ss_pred --CcEEEEECCCC-------eEE-EEecC---cCccEEEEEeCCCCeEEE
Q 012799 220 --GDARIWDVSLR-------KCV-ICLSG---HTLAVTCVKWGGDGVIYT 256 (456)
Q Consensus 220 --g~i~iwd~~~~-------~~~-~~~~~---~~~~v~~~~~~~~~~l~~ 256 (456)
..|.-|..... +.+ ..+.. ....-..|.|.|+|.|+.
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYv 129 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYV 129 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEE
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEE
Confidence 23444443322 111 11122 234456799999994443
No 467
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.12 E-value=3.4 Score=38.51 Aligned_cols=76 Identities=11% Similarity=0.091 Sum_probs=49.2
Q ss_pred ceEEEEecccccCCCCCEEEEEeCCCcEEEEEC---------CCCeEEEEe-----------cCcCccEEEEEeCCCC--
Q 012799 195 WITGISWEPVHLNAPCRRFVSASKDGDARIWDV---------SLRKCVICL-----------SGHTLAVTCVKWGGDG-- 252 (456)
Q Consensus 195 ~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~---------~~~~~~~~~-----------~~~~~~v~~~~~~~~~-- 252 (456)
.|..+..++ .|..++-+|.+|.+.++=. +.++..... ....-.+..++|+|+.
T Consensus 105 eV~~vl~s~-----~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~ 179 (741)
T KOG4460|consen 105 EVYQVLLSP-----TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSIL 179 (741)
T ss_pred EEEEEEecC-----CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccC
Confidence 344555555 8899999999987655431 223221111 1122346678899965
Q ss_pred --eEEEEeCCCcEEEEECCCCeEEE
Q 012799 253 --VIYTGSQDCTIKVWETTQGKLIR 275 (456)
Q Consensus 253 --~l~~~~~dg~i~iwd~~~~~~~~ 275 (456)
.++.-+.|..+++||+...+.+.
T Consensus 180 D~hL~iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 180 DPHLVLLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred CceEEEEecCcEEEEEecCCcchhh
Confidence 78888999999999998765543
No 468
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.02 E-value=2.8 Score=38.29 Aligned_cols=164 Identities=15% Similarity=0.177 Sum_probs=95.5
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCccee-EE-ecCCC----CEE-EEEEcCCCCEEEEEeCCCe
Q 012799 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-KC-TGHKN----WVL-CIAWSADGKHLVSGSKAGE 173 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~-~~-~~~~~----~v~-~~~~~~~~~~l~s~~~dg~ 173 (456)
++.|..-...|..+-..|||+.|..-+. ..+.++++.+..... .+ ....+ .|+ .+..-..|..++.++.||.
T Consensus 213 i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~ 291 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGL 291 (733)
T ss_pred hhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCc
Confidence 3445666778888999999998877655 578899887543211 11 11111 122 1222235667888899999
Q ss_pred EEEE-eCCCCCCccccccCcccceEEEEeccc-----ccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEE
Q 012799 174 LQCW-DPQTGKPSGNPLSGHKKWITGISWEPV-----HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVK 247 (456)
Q Consensus 174 i~vw-d~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 247 (456)
|.-| |.+.+... |-..+....+.|. ....+.+-|++-+..|++.++.....+.+..-. --..+.-++
T Consensus 292 vsQWFdvr~~~~p------~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~ 364 (733)
T COG4590 292 VSQWFDVRRDGQP------HLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVA 364 (733)
T ss_pred eeeeeeeecCCCC------cceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceee
Confidence 8877 55443221 1111222222211 011144567777888888888765544433222 223566788
Q ss_pred eCCCC-eEEEEeCCCcEEEEECCCCeE
Q 012799 248 WGGDG-VIYTGSQDCTIKVWETTQGKL 273 (456)
Q Consensus 248 ~~~~~-~l~~~~~dg~i~iwd~~~~~~ 273 (456)
++|.+ +++ ....|.++++.+++..+
T Consensus 365 ~Sp~~~~Ll-~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 365 MSPNQAYLL-SEDQGKIRLAQLENRNP 390 (733)
T ss_pred eCcccchhe-eecCCceEEEEecCCCC
Confidence 99988 444 45667899998877544
No 469
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.02 E-value=3.3 Score=23.50 Aligned_cols=31 Identities=29% Similarity=0.374 Sum_probs=23.3
Q ss_pred CCCCeEEEEE-CCCcEEEEeCCCCcceeEEec
Q 012799 118 PDGRQLASGS-GDTTVRLWDLNTQTPMFKCTG 148 (456)
Q Consensus 118 ~~~~~l~~~~-~d~~v~vwd~~~~~~~~~~~~ 148 (456)
|++++|+++. .+++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5677666654 578999999988887777664
No 470
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=87.98 E-value=36 Score=35.21 Aligned_cols=103 Identities=10% Similarity=0.047 Sum_probs=58.7
Q ss_pred CCCcEEEEecCCCCCCcccccc--ccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec--ccccEEEEEeee
Q 012799 337 DDFTMFLWEPAVSKQPKTRMTG--HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG--HVGPVYQIRFEL 412 (456)
Q Consensus 337 ~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~ 412 (456)
.+|.++.|++...+.....+.. -.++| .+..|...++.+| ....+++||+...++++..+. -...|..+.+
T Consensus 910 ~~g~~ytyk~~~~g~~lellh~T~~~~~v--~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt-- 984 (1205)
T KOG1898|consen 910 SSGFVYTYKFVRNGDKLELLHKTEIPGPV--GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT-- 984 (1205)
T ss_pred CCCceEEEEEEecCceeeeeeccCCCccc--eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEee--
Confidence 4566788876555543332221 12233 4566765565554 456899999988776654332 2334555422
Q ss_pred eeeecCCCCceeeecccccccceeEecCCCeEEEeeCC
Q 012799 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD 450 (456)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~D 450 (456)
-.....+.+...++..+.|.++++.|+.-..|
T Consensus 985 ------~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD 1016 (1205)
T KOG1898|consen 985 ------YGARIVVGDIQESVHFVRYRREDNQLIVFADD 1016 (1205)
T ss_pred ------cceEEEEeeccceEEEEEEecCCCeEEEEeCC
Confidence 23344455556666666788877766665554
No 471
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.55 E-value=6.6 Score=31.46 Aligned_cols=30 Identities=10% Similarity=0.312 Sum_probs=25.2
Q ss_pred ccEEEEEeCCCC-------eEEEEeCCCcEEEEECCC
Q 012799 241 LAVTCVKWGGDG-------VIYTGSQDCTIKVWETTQ 270 (456)
Q Consensus 241 ~~v~~~~~~~~~-------~l~~~~~dg~i~iwd~~~ 270 (456)
..+..++|+|.| .|++.+.+|.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999954 688899999999998664
No 472
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.44 E-value=3 Score=23.37 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=20.2
Q ss_pred CCcccEEEEEECCCCCeEEEEE-CC--CcEEEE
Q 012799 106 GHTEAVLSVAFSPDGRQLASGS-GD--TTVRLW 135 (456)
Q Consensus 106 ~h~~~V~~~~~s~~~~~l~~~~-~d--~~v~vw 135 (456)
...+.-....|+|||+.|+.++ .+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3456778899999999888665 44 555555
No 473
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=85.73 E-value=4.1 Score=22.76 Aligned_cols=32 Identities=28% Similarity=0.320 Sum_probs=20.8
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEeC-C--CeEEEE
Q 012799 146 CTGHKNWVLCIAWSADGKHLVSGSK-A--GELQCW 177 (456)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~l~s~~~-d--g~i~vw 177 (456)
+......-....|+|||+.|+-++. + |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3345567788999999998886554 4 555554
No 474
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=85.54 E-value=28 Score=31.62 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=10.6
Q ss_pred EecCCCeEEEeeCCC
Q 012799 437 WSADSRLLLSGSKDS 451 (456)
Q Consensus 437 ~s~dg~~l~s~s~Dg 451 (456)
..-++++++.||.+.
T Consensus 318 ~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 318 VSWNNGVLLIGGENS 332 (346)
T ss_pred EEcCCEEEEEeccCC
Confidence 345778888888753
No 475
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=85.21 E-value=5 Score=22.73 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=24.0
Q ss_pred CCCCEEEEEE-CCCcEEEEeCCCCeEEEEEec
Q 012799 370 PDGQWVASAS-FDKSIKLWNGTTGKFVAVFRG 400 (456)
Q Consensus 370 p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~ 400 (456)
|++++|+++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5677666554 578999999999988887765
No 476
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.79 E-value=20 Score=29.33 Aligned_cols=70 Identities=9% Similarity=-0.037 Sum_probs=38.5
Q ss_pred CCCEEEEEeCC--CcEEEEECCCCeEEEEecCcCccEE--EEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEee
Q 012799 209 PCRRFVSASKD--GDARIWDVSLRKCVICLSGHTLAVT--CVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK 278 (456)
Q Consensus 209 ~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 278 (456)
++.++.+.+.- ..|++||+.+++.+...+-....+. .+.-..+....-.-.+|.-..+|.++-+.+..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~ 128 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS 128 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc
Confidence 44555555543 4799999999987765532211111 1111122222333456777788887766665554
No 477
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=84.67 E-value=3 Score=22.18 Aligned_cols=27 Identities=30% Similarity=0.635 Sum_probs=22.4
Q ss_pred CCeEEEEeCCCcEEEEECCCCeEEEEe
Q 012799 251 DGVIYTGSQDCTIKVWETTQGKLIREL 277 (456)
Q Consensus 251 ~~~l~~~~~dg~i~iwd~~~~~~~~~~ 277 (456)
++.+++++.+|.+..+|.++|+.+..+
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 457888999999999999998876543
No 478
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=84.53 E-value=2.6 Score=22.39 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=21.1
Q ss_pred EEEEEECCCcEEEEeCCCCeEEEEE
Q 012799 374 WVASASFDKSIKLWNGTTGKFVAVF 398 (456)
Q Consensus 374 ~l~s~~~dg~i~iwd~~~~~~~~~~ 398 (456)
.++.++.+|.+..+|..+|+.+..+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5778889999999999999887653
No 479
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=84.48 E-value=7.3 Score=38.13 Aligned_cols=72 Identities=17% Similarity=0.226 Sum_probs=43.8
Q ss_pred CCCEEEEEeCCCcEEEEECCC----CeEEEE-e-cC--------------------cCccEEEEEeCC-----CCeEEEE
Q 012799 209 PCRRFVSASKDGDARIWDVSL----RKCVIC-L-SG--------------------HTLAVTCVKWGG-----DGVIYTG 257 (456)
Q Consensus 209 ~~~~l~~~~~dg~i~iwd~~~----~~~~~~-~-~~--------------------~~~~v~~~~~~~-----~~~l~~~ 257 (456)
+...++.+..||.+....... +..... . .. .......++++. +..+++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 456788888888888777653 111111 1 00 112344455544 3389999
Q ss_pred eCCCcEEEEECCCCeEEEEeecC
Q 012799 258 SQDCTIKVWETTQGKLIRELKGH 280 (456)
Q Consensus 258 ~~dg~i~iwd~~~~~~~~~~~~~ 280 (456)
+.|+.+|+||+.+++++......
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEETT
T ss_pred eCCCeEEEEECCCCeEEEEeccc
Confidence 99999999999999998776543
No 480
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=84.40 E-value=29 Score=30.83 Aligned_cols=60 Identities=18% Similarity=0.138 Sum_probs=40.5
Q ss_pred CCCeEEEEECCCcEEEEeCCCC-cceeEEecCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEeCC
Q 012799 119 DGRQLASGSGDTTVRLWDLNTQ-TPMFKCTGHKNWVLCIAWSADGKHLVSG-SKAGELQCWDPQ 180 (456)
Q Consensus 119 ~~~~l~~~~~d~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~ 180 (456)
++++|+.|+.+| +.+.+.... .....+ .+...|+++...+.-+.|++- +....++++++.
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl-~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKL-IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEe-cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence 346899999998 555566542 222222 356789999999877766654 444559999984
No 481
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=84.27 E-value=28 Score=30.47 Aligned_cols=113 Identities=17% Similarity=0.270 Sum_probs=67.3
Q ss_pred CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEe------CCCcEEEEECCCCeEEEEecC-----cC
Q 012799 172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS------KDGDARIWDVSLRKCVICLSG-----HT 240 (456)
Q Consensus 172 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~-----~~ 240 (456)
..|++||..+.+-.. .-.+-.+.|.++.|.. +.+.++.|. ....+..||..+..-. .+.. -.
T Consensus 16 ~~lC~yd~~~~qW~~-~g~~i~G~V~~l~~~~-----~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ip 88 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSS-PGNGISGTVTDLQWAS-----NNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIP 88 (281)
T ss_pred CEEEEEECCCCEeec-CCCCceEEEEEEEEec-----CCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCC
Confidence 359999988766543 3445678899999974 445555553 3557888998776532 2222 24
Q ss_pred ccEEEEEeCCC-C--eEEEEe-CCC--cEEEEECCCCeEEEE-eecCCcceEEEEecC
Q 012799 241 LAVTCVKWGGD-G--VIYTGS-QDC--TIKVWETTQGKLIRE-LKGHGHWVNSLALST 291 (456)
Q Consensus 241 ~~v~~~~~~~~-~--~l~~~~-~dg--~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~ 291 (456)
++|+.+.+... + ..++|. .+| .|..||=.+...+.. .......|..+.+-+
T Consensus 89 gpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 89 GPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred CcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence 77888877432 2 343433 233 467777555544444 333345666665544
No 482
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.03 E-value=55 Score=33.70 Aligned_cols=69 Identities=13% Similarity=0.073 Sum_probs=43.0
Q ss_pred EECCCCCeEEEEECCCcEEEEeCCCCccee---E------E--ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 012799 115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMF---K------C--TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (456)
Q Consensus 115 ~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~---~------~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 183 (456)
++..-|+.+..|+.+|.+.+|.+.+..... . + .-+..+|..+...+.-.++++ -.|+.|.++++.+-+
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~-l~dsqi~~~~l~~~~ 99 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLI-LSDSQIAVHKLPELE 99 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhe-ecCCcceeeecCccc
Confidence 344457889999999999999986542110 0 0 113466666666654444444 346678888776655
Q ss_pred C
Q 012799 184 P 184 (456)
Q Consensus 184 ~ 184 (456)
.
T Consensus 100 ~ 100 (877)
T KOG2063|consen 100 P 100 (877)
T ss_pred c
Confidence 4
No 483
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=82.94 E-value=52 Score=32.58 Aligned_cols=153 Identities=10% Similarity=0.059 Sum_probs=0.0
Q ss_pred cccEEEEEECCCCCeEEEEECCCcEEEEeC---------CCCcceeEEecCCCCEEEEEEcCCCCEEEEEeC-CCe---E
Q 012799 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDL---------NTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-AGE---L 174 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~---i 174 (456)
.+.|.++.|.++++.+++.-.+|.|.+||. ........-..+..-|.....-....++++.+. ++. .
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Q ss_pred EEEeCCCCCCcccccc---CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCc-------CccEE
Q 012799 175 QCWDPQTGKPSGNPLS---GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH-------TLAVT 244 (456)
Q Consensus 175 ~vwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~ 244 (456)
+++.+.........+. .+........|.- ....+..- .++.|.+|++..-+...++.-. ...|.
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y-----~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vS 282 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCY-----QFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVS 282 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEE-----eCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceE
Q ss_pred EEEeCCCCeEEEEeCCCcEEEEEC
Q 012799 245 CVKWGGDGVIYTGSQDCTIKVWET 268 (456)
Q Consensus 245 ~~~~~~~~~l~~~~~dg~i~iwd~ 268 (456)
-.+.+++..|++... .|++.|+
T Consensus 283 l~~~s~nRvLLs~~n--kIyLld~ 304 (670)
T PF10395_consen 283 LKPPSPNRVLLSVNN--KIYLLDL 304 (670)
T ss_pred eecCCCCeEEEEcCC--EEEEEee
No 484
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=82.90 E-value=38 Score=31.01 Aligned_cols=166 Identities=14% Similarity=0.145 Sum_probs=88.9
Q ss_pred CCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcC----CCCE--EEEEe-CC---CeEEEEeCCC--CCCcc
Q 012799 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA----DGKH--LVSGS-KA---GELQCWDPQT--GKPSG 186 (456)
Q Consensus 119 ~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~----~~~~--l~s~~-~d---g~i~vwd~~~--~~~~~ 186 (456)
...+++....++-+.+||++ |+.+..+. .+.++.+.... +|+. |+.++ ++ ..|++|.+.. +....
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 44577777788899999997 55566554 23444443321 3332 34443 32 4699997753 32211
Q ss_pred c-----cccCcccceEEEEecccccCCCCC-EEEEEeCCCcEEEEECC---CC----eEEEEecCcCccEEEEEeCCCC-
Q 012799 187 N-----PLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDARIWDVS---LR----KCVICLSGHTLAVTCVKWGGDG- 252 (456)
Q Consensus 187 ~-----~~~~~~~~v~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~---~~----~~~~~~~~~~~~v~~~~~~~~~- 252 (456)
. .+......++.+|.-... .+|. +.+..+.+|.+..|.+. .+ +.++.+.. ...+..+..+...
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~--~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g 220 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSP--STGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETG 220 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-T--TT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTT
T ss_pred cCCCCcccccccccceeeEEeecC--CCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccC
Confidence 0 011112346777764311 1333 56667888988888764 22 45666654 3467777777655
Q ss_pred eEEEEeCCCcEEEEECCC-----CeEEEEeec--CCcceEEEEec
Q 012799 253 VIYTGSQDCTIKVWETTQ-----GKLIRELKG--HGHWVNSLALS 290 (456)
Q Consensus 253 ~l~~~~~dg~i~iwd~~~-----~~~~~~~~~--~~~~i~~~~~~ 290 (456)
.|+.+-.+.-|.-|+.+- ++.+....+ ....+..+++-
T Consensus 221 ~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly 265 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALY 265 (381)
T ss_dssp EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEE
T ss_pred CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEE
Confidence 999999998888888762 222222222 23456666664
No 485
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=82.59 E-value=36 Score=30.56 Aligned_cols=105 Identities=11% Similarity=0.090 Sum_probs=51.4
Q ss_pred CCCeEEEEECC-----CcEEEEeCCCCcce---eEEecCCCCE--EEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCC
Q 012799 119 DGRQLASGSGD-----TTVRLWDLNTQTPM---FKCTGHKNWV--LCIAWSADGKHLVSGSKA-----GELQCWDPQTGK 183 (456)
Q Consensus 119 ~~~~l~~~~~d-----~~v~vwd~~~~~~~---~~~~~~~~~v--~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~ 183 (456)
++.+++.|+.+ ..+..+|+.+.+-. ..+..-..+. .+++. -+++..+.|+.. ..+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 55667777654 25666777655421 1111111111 12222 256666777642 358888887765
Q ss_pred Ccccc-ccCc-ccceEEEEecccccCCCCCEEEEEeCCC----cEEEEECCCCe
Q 012799 184 PSGNP-LSGH-KKWITGISWEPVHLNAPCRRFVSASKDG----DARIWDVSLRK 231 (456)
Q Consensus 184 ~~~~~-~~~~-~~~v~~~~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~ 231 (456)
-.... +... ......+.. ++..++.|+.++ .+..||..+.+
T Consensus 151 W~~~~~~p~~~r~~~~~~~~-------~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKL-------QNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCCCCCCcceEEEE-------CCEEEEEcCCCCccccceEEEecCCCe
Confidence 32211 1111 111111111 556778887654 35678887654
No 486
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=82.45 E-value=74 Score=34.06 Aligned_cols=86 Identities=14% Similarity=0.161 Sum_probs=42.8
Q ss_pred eEEEECCCCCEEEEEECCC---cEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecC
Q 012799 364 NHVYFSPDGQWVASASFDK---SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD 440 (456)
Q Consensus 364 ~~~~~sp~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 440 (456)
.+++++++|.+.++-+... .|+.. .+...+..+.|-..++.|..-....|+..... +.....-..+.+++.+||
T Consensus 596 r~Iavg~~G~lyvaEsD~rriNrvr~~--~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~-~At~A~lnsp~alaVsPd 672 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESDGRRINRVRKL--STDGTISILAGAKSPCSCDVAACCDCFSLRDV-AATQAKLNSPYALAVSPD 672 (1899)
T ss_pred hceeecCCceEEEEeccchhhhheEEe--ccCceEEEecCCCCCCCcccccCCccccccch-hhhccccCCcceEEECCC
Confidence 6788888887655544332 23333 33335666666555554431111111111110 011112334666799999
Q ss_pred CCeEEEeeCCCc
Q 012799 441 SRLLLSGSKDST 452 (456)
Q Consensus 441 g~~l~s~s~Dg~ 452 (456)
|...++-..+-.
T Consensus 673 g~v~IAD~gN~r 684 (1899)
T KOG4659|consen 673 GDVIIADSGNSR 684 (1899)
T ss_pred CcEEEecCCchh
Confidence 988776554433
No 487
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=82.20 E-value=33 Score=29.83 Aligned_cols=134 Identities=14% Similarity=0.025 Sum_probs=81.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccc-cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEEC
Q 012799 149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL-SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV 227 (456)
Q Consensus 149 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 227 (456)
-.+-+..+.++ +++...+..+.-+++.|+.+.......- ....+--.++.. .|++...+..|.-..+.|+
T Consensus 85 ~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v-------sGn~aYVadlddgfLivdv 155 (370)
T COG5276 85 ARDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV-------SGNYAYVADLDDGFLIVDV 155 (370)
T ss_pred hhhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe-------cCCEEEEeeccCcEEEEEC
Confidence 44556667775 4477777777789999998765432111 111122222222 6788888887777888888
Q ss_pred CCCe---EEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeE---EEEeecCCcceEEEEecCcc
Q 012799 228 SLRK---CVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKL---IRELKGHGHWVNSLALSTEY 293 (456)
Q Consensus 228 ~~~~---~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~~~~~ 293 (456)
.+.+ ..-........-..++.+.+ +-+.+..|+-+.+.|+..... +.... ....+.++..+++.
T Consensus 156 sdpssP~lagrya~~~~d~~~v~ISGn-~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr 225 (370)
T COG5276 156 SDPSSPQLAGRYALPGGDTHDVAISGN-YAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNR 225 (370)
T ss_pred CCCCCceeeeeeccCCCCceeEEEecC-eEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCe
Confidence 6543 33344444455566777755 666777888899999876532 22222 23356777777664
No 488
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=82.01 E-value=49 Score=31.71 Aligned_cols=156 Identities=17% Similarity=0.129 Sum_probs=0.0
Q ss_pred CCCCeEEEE---ECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcc-
Q 012799 118 PDGRQLASG---SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK- 193 (456)
Q Consensus 118 ~~~~~l~~~---~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~- 193 (456)
.++-++++. ...+...+.|.+ |.....+.........+...++|.+++..+ +.+..+|+.........+....
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v~~~~~l~~~~~ 189 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKVIWEYDLPGGYY 189 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--EEEEEE--TTEE
T ss_pred CCcEEEEeCCCCCCCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCEEEeeecCCccc
Q ss_pred cceEEEEecccccCCCCCEEEEEe--------------CCCcEEEEECCCCeEEEEecCcCcc-----------------
Q 012799 194 KWITGISWEPVHLNAPCRRFVSAS--------------KDGDARIWDVSLRKCVICLSGHTLA----------------- 242 (456)
Q Consensus 194 ~~v~~~~~~~~~~~~~~~~l~~~~--------------~dg~i~iwd~~~~~~~~~~~~~~~~----------------- 242 (456)
..-..+...| +|++|+.+. .|. |..+| .+++.+..+.....-
T Consensus 190 ~~HHD~~~l~-----nGn~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~ 262 (477)
T PF05935_consen 190 DFHHDIDELP-----NGNLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDIS 262 (477)
T ss_dssp -B-S-EEE-T-----TS-EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS
T ss_pred ccccccEECC-----CCCEEEEEeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCcccccccccccccccc
Q ss_pred ----------EEEEEeCC-CC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcc
Q 012799 243 ----------VTCVKWGG-DG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHW 283 (456)
Q Consensus 243 ----------v~~~~~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 283 (456)
+.++.+.+ ++ .++++-.-..|...|.++++....+..+...
T Consensus 263 ~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w 315 (477)
T PF05935_consen 263 GSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGW 315 (477)
T ss_dssp -SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT-
T ss_pred cCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCC
No 489
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=81.82 E-value=67 Score=33.09 Aligned_cols=115 Identities=18% Similarity=0.229 Sum_probs=74.1
Q ss_pred ccEEEEEECC-CCCeEEEEECCCcEEEEeCCCCc-----ceeEEecCCC----------CEEEEEEcCCCCEEEEEeCCC
Q 012799 109 EAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQT-----PMFKCTGHKN----------WVLCIAWSADGKHLVSGSKAG 172 (456)
Q Consensus 109 ~~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~~~-----~~~~~~~~~~----------~v~~~~~~~~~~~l~s~~~dg 172 (456)
.+...++|+| +.+.||.....|...||++.... .......+.+ .-..+.|.++-+.|+.++..
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~- 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS- 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-
Confidence 3667899998 45689999999999999992211 1111111122 23478898888888887764
Q ss_pred eEEEEeCCCCCCcc-ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC
Q 012799 173 ELQCWDPQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL 229 (456)
Q Consensus 173 ~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 229 (456)
.+.++|+++..... .........|.++.-+|.. ..+++.-+. ..|...++..
T Consensus 225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~----~~~~FiLTs-~eiiw~~~~~ 277 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDN----PSHVFILTS-KEIIWLDVKS 277 (765)
T ss_pred ceEEEECCCCCccchhccCCChhheeeEEecCCc----cceEEEEec-CeEEEEEccC
Confidence 68999999876533 2344455678888877732 123333333 5677777765
No 490
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=81.57 E-value=31 Score=36.21 Aligned_cols=136 Identities=14% Similarity=0.188 Sum_probs=0.0
Q ss_pred CeEEEEEC---------CCcEEEEeC-----CCCcceeEEe-------cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799 121 RQLASGSG---------DTTVRLWDL-----NTQTPMFKCT-------GHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (456)
Q Consensus 121 ~~l~~~~~---------d~~v~vwd~-----~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 179 (456)
.+||.|.. .|.+.|+|+ +.+++....+ ..++.|..++=- +|.++.+-|. +|.+|++
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV-~G~l~~~~Gq--KI~v~~l 1123 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV-RGHLLSSQGQ--KIIVRKL 1123 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe-ccEEEEccCc--EEEEEEe
Q ss_pred -CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCcc---EEEEEeCCCC---
Q 012799 180 -QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA---VTCVKWGGDG--- 252 (456)
Q Consensus 180 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~~--- 252 (456)
+....+..-+..-.-.+.++..-. ++++.|..-..|.+.-....-....+-..... +.++.|--+|
T Consensus 1124 ~r~~~ligVaFiD~~~yv~s~~~vk-------nlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L 1196 (1366)
T KOG1896|consen 1124 DRDSELIGVAFIDLPLYVHSMKVVK-------NLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNL 1196 (1366)
T ss_pred ccCCcceeeEEeccceeEEehhhhh-------hheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCee
Q ss_pred eEEEEeCCCcEEEE
Q 012799 253 VIYTGSQDCTIKVW 266 (456)
Q Consensus 253 ~l~~~~~dg~i~iw 266 (456)
.++++..++.|++|
T Consensus 1197 ~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1197 SFLVSDADRNIHVY 1210 (1366)
T ss_pred EEEEEcCCCcEEEE
No 491
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=81.38 E-value=54 Score=31.75 Aligned_cols=111 Identities=17% Similarity=0.138 Sum_probs=55.8
Q ss_pred CCCCCeEEEEECCCcEEEEeCCCCcc--eeEEecC-CCCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCccccccCc
Q 012799 117 SPDGRQLASGSGDTTVRLWDLNTQTP--MFKCTGH-KNWVLCIAWSADG-KHLVSGSKAGELQCWDPQTGKPSGNPLSGH 192 (456)
Q Consensus 117 s~~~~~l~~~~~d~~v~vwd~~~~~~--~~~~~~~-~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 192 (456)
..++..++.+..+|.+....+..... ....-+. .....++.+..+| .+|+.|+.-|.=.++.+.............
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 45677888889999998887765331 2222223 4556677776554 477778775544444433222211112233
Q ss_pred ccceEEEEecccccCCCC-----CEEEEEe---CCCcEEEEEC
Q 012799 193 KKWITGISWEPVHLNAPC-----RRFVSAS---KDGDARIWDV 227 (456)
Q Consensus 193 ~~~v~~~~~~~~~~~~~~-----~~l~~~~---~dg~i~iwd~ 227 (456)
-++|.+++..+....... ..+++++ .+|.+++..-
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~ 341 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN 341 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec
Confidence 467888877543211111 1455543 4678888753
No 492
>PLN02153 epithiospecifier protein
Probab=81.09 E-value=43 Score=30.39 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=15.1
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCe
Q 012799 209 PCRRFVSASKD-----GDARIWDVSLRK 231 (456)
Q Consensus 209 ~~~~l~~~~~d-----g~i~iwd~~~~~ 231 (456)
++..++.|+.+ ..+.+||..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence 45667777753 357888887654
No 493
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=80.94 E-value=34 Score=29.14 Aligned_cols=146 Identities=14% Similarity=0.130 Sum_probs=0.0
Q ss_pred EEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCC-----CCCccccccCcccceEEEEecccc
Q 012799 134 LWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK---AGELQCWDPQT-----GKPSGNPLSGHKKWITGISWEPVH 205 (456)
Q Consensus 134 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~-----~~~~~~~~~~~~~~v~~~~~~~~~ 205 (456)
+||+.+++....-........+-++-+||++|.+|+. ...+++++... .-...........+=.+..-.|
T Consensus 50 ~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~-- 127 (243)
T PF07250_consen 50 EYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP-- 127 (243)
T ss_pred EEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC--
Q ss_pred cCCCCCEEEEEeCCCcEEEEECC--CCeEEEEe--------cCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEE
Q 012799 206 LNAPCRRFVSASKDGDARIWDVS--LRKCVICL--------SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIR 275 (456)
Q Consensus 206 ~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~--------~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 275 (456)
||+.|+.|+.+....-+-.. .......+ .....----+...|+|.|+.-+..+.+ +||..+.+.++
T Consensus 128 ---DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~-i~d~~~n~v~~ 203 (243)
T PF07250_consen 128 ---DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI-IYDYKTNTVVR 203 (243)
T ss_pred ---CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE-EEeCCCCeEEe
Q ss_pred EeecCCcceE
Q 012799 276 ELKGHGHWVN 285 (456)
Q Consensus 276 ~~~~~~~~i~ 285 (456)
.+..-.+.++
T Consensus 204 ~lP~lPg~~R 213 (243)
T PF07250_consen 204 TLPDLPGGPR 213 (243)
T ss_pred eCCCCCCCce
No 494
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=80.49 E-value=5.3 Score=22.30 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=22.9
Q ss_pred EEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799 374 WVASASFDKSIKLWNGTTGKFVAVFRG 400 (456)
Q Consensus 374 ~l~s~~~dg~i~iwd~~~~~~~~~~~~ 400 (456)
.++.++.||.+.-.|.++|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 355668999999999999999988763
No 495
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=80.32 E-value=5.5 Score=22.22 Aligned_cols=27 Identities=19% Similarity=0.464 Sum_probs=23.5
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEeec
Q 012799 253 VIYTGSQDCTIKVWETTQGKLIRELKG 279 (456)
Q Consensus 253 ~l~~~~~dg~i~iwd~~~~~~~~~~~~ 279 (456)
.+++++.+|.|.-.|.++|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 467779999999999999999988764
No 496
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=79.80 E-value=55 Score=30.82 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=15.9
Q ss_pred CCEEEEEeCCCcEEEEecCCC
Q 012799 329 PERLVSGSDDFTMFLWEPAVS 349 (456)
Q Consensus 329 ~~~l~~~~~dg~i~iwd~~~~ 349 (456)
.+.+++.+.+|.|.+|++..+
T Consensus 201 r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 201 RRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp TTEEEEEESSE-EEEEEE-SS
T ss_pred cCEEEEEeCCCcEEEEEEeCC
Confidence 456999999999999998753
No 497
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=79.54 E-value=6.1 Score=20.25 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=16.6
Q ss_pred EeEEEECCCCCEEEEEECCCcEEEE
Q 012799 363 VNHVYFSPDGQWVASASFDKSIKLW 387 (456)
Q Consensus 363 v~~~~~sp~~~~l~s~~~dg~i~iw 387 (456)
...++++++|+++++=+...+|++|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4567777777777666666666654
No 498
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=79.35 E-value=54 Score=32.58 Aligned_cols=109 Identities=11% Similarity=0.157 Sum_probs=62.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC
Q 012799 150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL 229 (456)
Q Consensus 150 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 229 (456)
...++++.-+|.+..++.+..||.|++|++...+... ......+-..+.|.. .-++++..|..+.-|.-.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk--i~~~~~p~~nlv~tn-------hgl~~~tsdrr~la~~~d- 83 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK--ICEEAKPKENLVFTN-------HGLVTATSDRRALAWKED- 83 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhh--hhhhcCCccceeeec-------cceEEEeccchhheeecc-
Confidence 3457788888999999999999999999987654421 111122223344432 346777777777777532
Q ss_pred CeEEEEec---CcCccEEEEEeCCCCeEEEEeCCCcEEEEEC
Q 012799 230 RKCVICLS---GHTLAVTCVKWGGDGVIYTGSQDCTIKVWET 268 (456)
Q Consensus 230 ~~~~~~~~---~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~ 268 (456)
|-....+. .......++...|...-++|..-|-|.-+|.
T Consensus 84 gvvqqqfdyndqsekefss~~cdptaqnvvgtlcggv~q~dc 125 (1636)
T KOG3616|consen 84 GVVQQQFDYNDQSEKEFSSILCDPTAQNVVGTLCGGVEQFDC 125 (1636)
T ss_pred CcchhhccccchhhhhccceecCchhhhhhhhhccceeeehH
Confidence 22111121 1122344555566544444555555665653
No 499
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=78.52 E-value=56 Score=30.18 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=14.0
Q ss_pred CCCEEEEEeCC-----------CcEEEEECCCCe
Q 012799 209 PCRRFVSASKD-----------GDARIWDVSLRK 231 (456)
Q Consensus 209 ~~~~l~~~~~d-----------g~i~iwd~~~~~ 231 (456)
++..++.|+.+ ..+..||..+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~ 117 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS 117 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE
Confidence 45566666643 247778876654
No 500
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=78.10 E-value=37 Score=27.91 Aligned_cols=149 Identities=17% Similarity=0.123 Sum_probs=74.3
Q ss_pred CCCeEEEEEC--CCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCCccccccCcccc
Q 012799 119 DGRQLASGSG--DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPLSGHKKW 195 (456)
Q Consensus 119 ~~~~l~~~~~--d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 195 (456)
+|.++.+.+. ...|++||+.+++.+.+-.-....+..=-...-++++. -.-.+|.-..+|.++-+.+... ...+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~--~y~Ge 132 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRF--SYEGE 132 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccc--ccCCc
Confidence 4556666553 34799999999887765432211111111111122222 2345778888888877665422 22344
Q ss_pred eEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEE----ecCc-CccEEEEEeCCCCeE-EEEeCCCcEEEEECC
Q 012799 196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC----LSGH-TLAVTCVKWGGDGVI-YTGSQDCTIKVWETT 269 (456)
Q Consensus 196 v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~-~~~v~~~~~~~~~~l-~~~~~dg~i~iwd~~ 269 (456)
-+.++. ++..++.++...+++.-|.++-....+ ..+. -..++.+.|- +|.+ +-.=.+..|...|..
T Consensus 133 GWgLt~-------d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~ 204 (262)
T COG3823 133 GWGLTS-------DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPD 204 (262)
T ss_pred ceeeec-------CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCC
Confidence 455543 455566666666677766654332222 1111 1122333333 3322 222334445556666
Q ss_pred CCeEEEEe
Q 012799 270 QGKLIREL 277 (456)
Q Consensus 270 ~~~~~~~~ 277 (456)
+|+.+..+
T Consensus 205 sGrV~~wi 212 (262)
T COG3823 205 SGRVVAWI 212 (262)
T ss_pred CCcEEEEE
Confidence 66665544
Done!