Query 012799
Match_columns 456
No_of_seqs 903 out of 3670
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 16:27:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012799.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012799hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 2.5E-51 8.7E-56 380.5 39.5 309 98-456 98-407 (410)
2 1got_B GT-beta; complex (GTP-b 100.0 2.1E-50 7.1E-55 365.2 41.7 289 99-456 46-339 (340)
3 3ow8_A WD repeat-containing pr 100.0 4.4E-50 1.5E-54 359.4 38.9 286 101-456 25-317 (321)
4 2pbi_B Guanine nucleotide-bind 100.0 3E-49 1E-53 359.2 40.7 288 100-456 56-353 (354)
5 2ynn_A Coatomer subunit beta'; 100.0 1.7E-48 6E-53 346.8 38.7 288 100-455 5-298 (304)
6 1nr0_A Actin interacting prote 100.0 8.5E-49 2.9E-53 382.1 35.9 348 77-456 102-563 (611)
7 3iz6_a 40S ribosomal protein R 100.0 6.5E-49 2.2E-53 360.8 31.4 289 100-456 58-371 (380)
8 4gqb_B Methylosome protein 50; 100.0 3.5E-47 1.2E-51 342.9 36.8 281 105-456 27-327 (344)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.2E-47 1.4E-51 344.1 37.3 289 100-456 7-331 (345)
10 4ery_A WD repeat-containing pr 100.0 2.8E-46 9.6E-51 334.4 40.8 291 96-456 11-308 (312)
11 4g56_B MGC81050 protein; prote 100.0 6.3E-47 2.1E-51 344.1 36.0 283 104-456 38-339 (357)
12 3frx_A Guanine nucleotide-bind 100.0 1.9E-46 6.4E-51 336.0 38.0 283 101-456 10-313 (319)
13 2xzm_R RACK1; ribosome, transl 100.0 8.2E-46 2.8E-50 335.6 39.6 284 100-456 13-336 (343)
14 1erj_A Transcriptional repress 100.0 5.9E-46 2E-50 342.7 38.2 286 106-456 62-385 (393)
15 2hes_X YDR267CP; beta-propelle 100.0 5.2E-46 1.8E-50 334.7 36.0 288 100-456 6-324 (330)
16 1nr0_A Actin interacting prote 100.0 5.6E-45 1.9E-49 355.2 45.5 350 98-456 49-475 (611)
17 2ymu_A WD-40 repeat protein; u 100.0 3.4E-44 1.2E-48 348.7 43.0 304 77-456 261-576 (577)
18 4aow_A Guanine nucleotide-bind 100.0 3.4E-43 1.2E-47 318.4 40.5 285 100-456 30-333 (340)
19 3zwl_B Eukaryotic translation 100.0 4.1E-43 1.4E-47 321.5 39.0 284 101-456 25-342 (369)
20 1vyh_C Platelet-activating fac 100.0 5.3E-43 1.8E-47 324.6 37.4 271 77-390 107-410 (410)
21 2ymu_A WD-40 repeat protein; u 100.0 2.6E-42 8.8E-47 335.5 43.7 304 77-456 220-535 (577)
22 1gxr_A ESG1, transducin-like e 100.0 2.3E-42 8E-47 312.5 40.2 280 104-456 47-333 (337)
23 2ynn_A Coatomer subunit beta'; 100.0 6.4E-43 2.2E-47 310.9 35.5 248 141-456 4-255 (304)
24 1sq9_A Antiviral protein SKI8; 100.0 2.7E-43 9.2E-48 326.2 34.1 285 100-456 8-391 (397)
25 3ow8_A WD repeat-containing pr 100.0 8E-43 2.7E-47 312.3 35.6 272 76-390 30-320 (321)
26 3dm0_A Maltose-binding peripla 100.0 1.1E-42 3.7E-47 344.7 39.1 303 101-456 375-689 (694)
27 3gre_A Serine/threonine-protei 100.0 5.3E-43 1.8E-47 328.4 30.6 323 96-456 50-436 (437)
28 3i2n_A WD repeat-containing pr 100.0 2.7E-42 9.3E-47 314.7 34.1 291 102-456 12-349 (357)
29 3odt_A Protein DOA1; ubiquitin 100.0 1.8E-41 6.2E-46 303.4 38.7 279 99-456 9-292 (313)
30 3ei3_B DNA damage-binding prot 100.0 7.5E-42 2.6E-46 314.9 34.2 282 101-456 66-378 (383)
31 1r5m_A SIR4-interacting protei 100.0 5.4E-42 1.8E-46 320.2 33.5 290 95-456 30-357 (425)
32 1k8k_C P40, ARP2/3 complex 41 100.0 4.9E-42 1.7E-46 314.9 31.8 283 104-456 4-357 (372)
33 4gqb_B Methylosome protein 50; 100.0 1.3E-41 4.4E-46 306.6 33.0 245 106-394 80-334 (344)
34 2pm9_A Protein WEB1, protein t 100.0 1.2E-42 4E-47 324.0 26.7 310 105-456 64-410 (416)
35 3k26_A Polycomb protein EED; W 100.0 3.8E-42 1.3E-46 314.8 28.8 284 103-456 13-362 (366)
36 2pm9_A Protein WEB1, protein t 100.0 1.4E-42 4.8E-47 323.5 25.8 282 107-456 11-333 (416)
37 1r5m_A SIR4-interacting protei 100.0 2.2E-41 7.4E-46 316.2 33.3 278 106-456 106-421 (425)
38 1got_B GT-beta; complex (GTP-b 100.0 2.1E-40 7E-45 299.7 37.8 269 76-388 53-340 (340)
39 3dwl_C Actin-related protein 2 100.0 1.2E-42 4E-47 319.6 21.7 243 105-390 8-280 (377)
40 3frx_A Guanine nucleotide-bind 100.0 7.6E-40 2.6E-44 293.1 38.7 253 100-392 57-318 (319)
41 3vl1_A 26S proteasome regulato 100.0 6.5E-42 2.2E-46 319.4 25.9 298 109-456 57-361 (420)
42 2pm7_B Protein transport prote 100.0 1.8E-40 6E-45 294.2 33.5 253 102-390 3-284 (297)
43 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.6E-40 1.9E-44 297.3 35.9 254 104-398 57-342 (345)
44 4aez_A CDC20, WD repeat-contai 100.0 2.3E-40 7.8E-45 306.6 33.2 279 104-456 87-376 (401)
45 2oaj_A Protein SNI1; WD40 repe 100.0 3.7E-40 1.3E-44 332.5 37.1 344 78-456 17-601 (902)
46 1yfq_A Cell cycle arrest prote 100.0 1.8E-40 6.1E-45 300.9 31.3 274 104-452 7-315 (342)
47 4e54_B DNA damage-binding prot 100.0 4.2E-41 1.4E-45 314.8 27.9 286 101-456 112-426 (435)
48 3vl1_A 26S proteasome regulato 100.0 2.9E-40 9.9E-45 308.2 33.2 295 91-456 79-415 (420)
49 2pbi_B Guanine nucleotide-bind 100.0 2.3E-39 8E-44 294.1 38.0 273 75-388 61-354 (354)
50 4g56_B MGC81050 protein; prote 100.0 1.5E-40 5.3E-45 302.1 30.1 247 102-392 88-344 (357)
51 2hes_X YDR267CP; beta-propelle 100.0 9.3E-40 3.2E-44 294.0 34.2 273 77-391 13-328 (330)
52 4a11_B DNA excision repair pro 100.0 2.1E-39 7.1E-44 301.1 37.3 291 99-456 34-361 (408)
53 1gxr_A ESG1, transducin-like e 100.0 6.3E-40 2.2E-44 296.5 32.8 278 107-456 8-292 (337)
54 3bg1_A Protein SEC13 homolog; 100.0 5.7E-41 2E-45 300.0 25.6 254 102-390 7-292 (316)
55 4h5i_A Guanine nucleotide-exch 100.0 1.2E-40 4E-45 303.6 28.0 277 108-456 14-339 (365)
56 3mkq_A Coatomer beta'-subunit; 100.0 4.2E-40 1.4E-44 332.9 34.9 270 100-410 5-278 (814)
57 1pgu_A Actin interacting prote 100.0 3.8E-39 1.3E-43 315.6 40.6 343 77-456 115-568 (615)
58 3sfz_A APAF-1, apoptotic pepti 100.0 9.5E-40 3.3E-44 344.6 38.9 288 101-456 608-909 (1249)
59 3mmy_A MRNA export factor; mRN 100.0 7.8E-40 2.7E-44 299.6 33.3 288 99-454 30-340 (368)
60 3dw8_B Serine/threonine-protei 100.0 4.1E-40 1.4E-44 309.8 32.1 306 106-456 26-442 (447)
61 4gga_A P55CDC, cell division c 100.0 3.4E-39 1.1E-43 300.6 37.1 273 110-456 107-391 (420)
62 3iz6_a 40S ribosomal protein R 100.0 1E-40 3.5E-45 306.3 23.5 257 132-456 48-325 (380)
63 3v7d_B Cell division control p 100.0 1.1E-38 3.8E-43 301.4 37.9 291 89-456 141-459 (464)
64 2j04_B YDR362CP, TAU91; beta p 100.0 1.1E-40 3.9E-45 315.1 24.1 281 102-456 201-513 (524)
65 2xzm_R RACK1; ribosome, transl 100.0 9.8E-39 3.3E-43 289.1 35.8 254 100-392 68-341 (343)
66 3v7d_B Cell division control p 100.0 1.3E-38 4.4E-43 301.0 38.0 281 100-456 113-417 (464)
67 1erj_A Transcriptional repress 100.0 7.6E-39 2.6E-43 295.2 35.4 239 110-391 125-389 (393)
68 1p22_A F-BOX/WD-repeat protein 100.0 3.8E-39 1.3E-43 301.7 33.3 269 105-456 130-410 (435)
69 2pm7_B Protein transport prote 100.0 3.9E-39 1.3E-43 285.5 31.4 260 144-456 3-281 (297)
70 4ggc_A P55CDC, cell division c 100.0 1.4E-38 4.6E-43 285.4 35.2 274 111-456 28-311 (318)
71 4ery_A WD repeat-containing pr 100.0 9E-39 3.1E-43 285.7 33.9 249 141-456 14-264 (312)
72 3sfz_A APAF-1, apoptotic pepti 100.0 6.9E-39 2.3E-43 338.0 38.3 311 77-456 614-1030(1249)
73 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.4E-38 2.2E-42 294.4 39.9 286 90-456 139-438 (445)
74 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.4E-38 2.5E-42 294.0 37.7 275 100-456 110-387 (445)
75 3f3f_A Nucleoporin SEH1; struc 100.0 1.1E-38 3.7E-43 289.7 28.3 291 101-456 4-333 (351)
76 4aow_A Guanine nucleotide-bind 100.0 6E-37 2.1E-41 277.4 38.4 277 76-393 36-339 (340)
77 3bg1_A Protein SEC13 homolog; 100.0 3E-39 1E-43 288.8 22.3 263 145-456 8-289 (316)
78 3jrp_A Fusion protein of prote 100.0 3.1E-38 1.1E-42 290.2 29.4 257 99-393 2-289 (379)
79 2oaj_A Protein SNI1; WD40 repe 100.0 4.9E-38 1.7E-42 317.1 33.3 195 105-309 14-240 (902)
80 1pgu_A Actin interacting prote 100.0 3E-37 1E-41 302.2 37.8 309 99-456 54-398 (615)
81 2aq5_A Coronin-1A; WD40 repeat 100.0 1.2E-37 4.2E-42 288.5 28.5 277 110-456 36-338 (402)
82 3dm0_A Maltose-binding peripla 100.0 1.6E-36 5.3E-41 300.6 36.3 273 76-390 380-692 (694)
83 4aez_A CDC20, WD repeat-contai 100.0 2.6E-36 8.9E-41 279.4 34.7 267 89-399 112-388 (401)
84 3mkq_A Coatomer beta'-subunit; 100.0 1.9E-36 6.6E-41 306.1 36.6 276 77-394 12-305 (814)
85 1k8k_C P40, ARP2/3 complex 41 100.0 9E-37 3.1E-41 279.8 30.5 252 100-393 44-363 (372)
86 4gga_A P55CDC, cell division c 100.0 1.1E-35 3.7E-40 276.9 38.0 280 79-405 116-409 (420)
87 1sq9_A Antiviral protein SKI8; 100.0 2.1E-36 7.1E-41 280.0 32.1 274 77-393 15-397 (397)
88 3jrp_A Fusion protein of prote 100.0 9E-37 3.1E-41 280.5 29.2 262 141-456 2-283 (379)
89 2j04_A TAU60, YPL007P, hypothe 100.0 3.3E-37 1.1E-41 283.9 25.6 260 105-456 12-293 (588)
90 3k26_A Polycomb protein EED; W 100.0 6.4E-37 2.2E-41 280.0 26.0 244 107-390 68-365 (366)
91 3i2n_A WD repeat-containing pr 100.0 2.5E-36 8.6E-41 275.2 29.8 253 105-394 62-356 (357)
92 2j04_B YDR362CP, TAU91; beta p 100.0 5.5E-38 1.9E-42 296.8 19.3 269 100-456 126-424 (524)
93 3zwl_B Eukaryotic translation 100.0 5.7E-35 2E-39 267.3 38.4 276 77-396 31-351 (369)
94 3jro_A Fusion protein of prote 100.0 6.5E-37 2.2E-41 304.8 26.4 254 101-392 2-286 (753)
95 3dwl_C Actin-related protein 2 100.0 2.3E-37 8E-42 284.3 19.7 242 146-456 7-278 (377)
96 2xyi_A Probable histone-bindin 100.0 8.4E-36 2.9E-40 278.3 29.6 245 144-456 122-406 (430)
97 3gre_A Serine/threonine-protei 100.0 5.7E-37 1.9E-41 287.4 21.7 291 115-456 34-355 (437)
98 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.8E-35 9.5E-40 276.7 30.9 255 108-408 4-360 (450)
99 4e54_B DNA damage-binding prot 100.0 6.3E-36 2.2E-40 279.7 24.4 286 78-395 119-434 (435)
100 3vu4_A KMHSV2; beta-propeller 100.0 2.3E-35 7.7E-40 267.9 27.1 294 100-456 11-332 (355)
101 3lrv_A PRE-mRNA-splicing facto 100.0 1.3E-35 4.5E-40 268.6 25.2 269 112-456 40-329 (343)
102 2xyi_A Probable histone-bindin 100.0 3.6E-35 1.2E-39 274.0 27.7 252 102-392 122-411 (430)
103 3odt_A Protein DOA1; ubiquitin 100.0 1.7E-33 6E-38 251.5 35.5 258 91-398 40-303 (313)
104 4ggc_A P55CDC, cell division c 100.0 3.2E-33 1.1E-37 250.4 37.0 266 81-393 38-317 (318)
105 2aq5_A Coronin-1A; WD40 repeat 100.0 9.6E-35 3.3E-39 269.1 27.9 252 100-394 73-345 (402)
106 2j04_A TAU60, YPL007P, hypothe 100.0 5.2E-36 1.8E-40 276.0 18.9 278 75-449 49-350 (588)
107 4a11_B DNA excision repair pro 100.0 1.2E-33 4E-38 262.3 34.2 281 105-456 96-401 (408)
108 3ei3_B DNA damage-binding prot 100.0 1.6E-34 5.5E-39 265.9 28.1 268 135-456 58-335 (383)
109 1p22_A F-BOX/WD-repeat protein 100.0 2.8E-34 9.6E-39 268.7 29.1 255 91-397 154-420 (435)
110 4h5i_A Guanine nucleotide-exch 100.0 1.9E-34 6.6E-39 262.6 27.1 243 103-391 68-343 (365)
111 3jro_A Fusion protein of prote 100.0 5.2E-35 1.8E-39 291.2 23.0 259 144-456 3-281 (753)
112 3dw8_B Serine/threonine-protei 100.0 1.7E-34 5.8E-39 271.4 25.3 255 148-456 26-369 (447)
113 3bws_A Protein LP49; two-domai 100.0 9.2E-33 3.1E-37 258.5 33.9 281 102-456 117-428 (433)
114 1yfq_A Cell cycle arrest prote 100.0 5.9E-34 2E-38 257.9 24.5 239 146-456 7-278 (342)
115 4gq1_A NUP37; propeller, trans 100.0 6.4E-34 2.2E-38 262.1 21.6 254 159-454 98-384 (393)
116 3vu4_A KMHSV2; beta-propeller 100.0 4.5E-33 1.5E-37 252.8 26.7 243 134-456 3-267 (355)
117 3f3f_A Nucleoporin SEH1; struc 100.0 1.3E-32 4.4E-37 249.6 29.7 264 100-398 49-344 (351)
118 2w18_A PALB2, fancn, partner a 100.0 5.3E-32 1.8E-36 234.3 26.7 284 110-456 41-353 (356)
119 3mmy_A MRNA export factor; mRN 100.0 5E-32 1.7E-36 247.7 28.0 250 135-456 24-300 (368)
120 1l0q_A Surface layer protein; 100.0 8.1E-31 2.8E-35 241.9 36.0 260 121-456 3-271 (391)
121 4gq1_A NUP37; propeller, trans 100.0 1.8E-32 6.1E-37 252.5 22.5 264 102-389 83-387 (393)
122 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.2E-31 1.1E-35 249.0 31.4 245 103-390 97-390 (450)
123 1l0q_A Surface layer protein; 100.0 2.6E-29 8.8E-34 231.8 39.6 258 99-405 23-289 (391)
124 3lrv_A PRE-mRNA-splicing facto 100.0 7.8E-32 2.7E-36 243.9 20.6 224 158-456 44-288 (343)
125 3bws_A Protein LP49; two-domai 100.0 2.8E-28 9.6E-33 228.1 33.4 276 108-456 60-386 (433)
126 2w18_A PALB2, fancn, partner a 100.0 8.1E-29 2.8E-33 214.5 25.2 246 99-389 77-355 (356)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 8.4E-28 2.9E-32 222.5 29.5 268 91-408 94-403 (415)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 2.8E-28 9.4E-33 225.7 24.7 274 107-456 61-383 (415)
129 1nir_A Nitrite reductase; hemo 100.0 3.2E-26 1.1E-30 218.3 34.4 295 91-456 160-510 (543)
130 2ecf_A Dipeptidyl peptidase IV 100.0 1.1E-26 3.6E-31 232.3 29.6 275 108-456 36-409 (741)
131 2ojh_A Uncharacterized protein 100.0 2.7E-26 9.1E-31 202.9 24.3 253 126-451 18-293 (297)
132 3vgz_A Uncharacterized protein 100.0 8.2E-25 2.8E-29 198.7 34.0 271 107-450 39-334 (353)
133 1nir_A Nitrite reductase; hemo 99.9 1.1E-25 3.8E-30 214.5 26.7 272 115-456 144-454 (543)
134 3u4y_A Uncharacterized protein 99.9 1.1E-24 3.8E-29 196.0 30.8 275 114-456 3-300 (331)
135 1xfd_A DIP, dipeptidyl aminope 99.9 3E-26 1E-30 228.5 20.9 277 110-456 18-389 (723)
136 1ri6_A Putative isomerase YBHE 99.9 6.7E-25 2.3E-29 198.4 27.7 264 122-456 7-304 (343)
137 1k32_A Tricorn protease; prote 99.9 5.8E-26 2E-30 234.5 22.5 319 98-456 42-457 (1045)
138 1pby_B Quinohemoprotein amine 99.9 8.9E-25 3E-29 197.0 27.2 271 121-456 2-306 (337)
139 2ecf_A Dipeptidyl peptidase IV 99.9 3.2E-25 1.1E-29 221.6 25.7 266 110-449 110-444 (741)
140 2z3z_A Dipeptidyl aminopeptida 99.9 1.8E-24 6.1E-29 215.0 30.1 273 109-456 82-431 (706)
141 1k32_A Tricorn protease; prote 99.9 3E-24 1E-28 221.7 28.2 277 101-456 196-498 (1045)
142 3o4h_A Acylamino-acid-releasin 99.9 2.1E-24 7E-29 209.5 22.9 261 108-452 21-304 (582)
143 1xfd_A DIP, dipeptidyl aminope 99.9 6E-24 2E-28 211.9 25.1 278 99-447 48-427 (723)
144 2ojh_A Uncharacterized protein 99.9 8.4E-24 2.9E-28 186.8 23.0 237 101-382 34-293 (297)
145 1ri6_A Putative isomerase YBHE 99.9 2.8E-22 9.7E-27 181.1 30.6 244 106-394 35-313 (343)
146 2z3z_A Dipeptidyl aminopeptida 99.9 6.2E-24 2.1E-28 211.1 21.2 263 111-450 28-376 (706)
147 1jmx_B Amine dehydrogenase; ox 99.9 4.8E-23 1.6E-27 186.7 23.6 271 113-456 4-321 (349)
148 2oit_A Nucleoporin 214KDA; NH2 99.9 3.6E-22 1.2E-26 185.3 29.6 181 107-294 35-253 (434)
149 3hfq_A Uncharacterized protein 99.9 1E-21 3.4E-26 177.9 28.3 259 129-456 15-313 (347)
150 3u4y_A Uncharacterized protein 99.9 8.9E-22 3E-26 177.0 27.3 250 100-394 32-307 (331)
151 1z68_A Fibroblast activation p 99.9 1.3E-22 4.3E-27 202.0 20.6 268 113-456 20-387 (719)
152 3pe7_A Oligogalacturonate lyas 99.9 5.7E-22 1.9E-26 182.4 22.2 288 98-456 20-378 (388)
153 3hfq_A Uncharacterized protein 99.9 3.5E-21 1.2E-25 174.3 26.0 249 106-396 37-324 (347)
154 1pby_B Quinohemoprotein amine 99.9 2.1E-21 7.3E-26 174.8 23.7 242 110-403 35-322 (337)
155 3scy_A Hypothetical bacterial 99.9 5.8E-20 2E-24 167.2 33.2 258 107-408 48-357 (361)
156 3vgz_A Uncharacterized protein 99.9 8.7E-21 3E-25 172.1 27.4 236 149-456 39-299 (353)
157 3o4h_A Acylamino-acid-releasin 99.9 1.1E-21 3.8E-26 190.2 21.0 236 150-456 21-272 (582)
158 2oit_A Nucleoporin 214KDA; NH2 99.9 1.3E-20 4.5E-25 174.8 23.4 212 130-392 23-279 (434)
159 1jof_A Carboxy-CIS,CIS-muconat 99.9 7.4E-20 2.5E-24 166.6 26.6 264 122-456 4-337 (365)
160 1z68_A Fibroblast activation p 99.9 6.2E-21 2.1E-25 189.9 20.1 234 110-391 61-391 (719)
161 3scy_A Hypothetical bacterial 99.9 1.2E-19 4.2E-24 165.0 26.8 266 120-456 13-333 (361)
162 4a5s_A Dipeptidyl peptidase 4 99.9 8.8E-20 3E-24 181.6 26.1 252 110-408 18-369 (740)
163 3c5m_A Oligogalacturonate lyas 99.8 1.7E-20 5.7E-25 173.0 17.2 286 111-456 38-378 (396)
164 3azo_A Aminopeptidase; POP fam 99.8 5.8E-19 2E-23 174.0 26.4 263 99-408 14-341 (662)
165 1q7f_A NHL, brain tumor CG1071 99.8 8.6E-18 2.9E-22 147.5 29.4 240 105-392 26-281 (286)
166 1jof_A Carboxy-CIS,CIS-muconat 99.8 6.9E-19 2.4E-23 160.1 22.4 243 107-392 38-342 (365)
167 2oiz_A Aromatic amine dehydrog 99.8 2.5E-18 8.6E-23 155.6 24.9 268 119-456 14-330 (361)
168 2gop_A Trilobed protease; beta 99.8 4.6E-18 1.6E-22 153.8 26.4 253 109-456 15-327 (347)
169 2dg1_A DRP35, lactonase; beta 99.8 3.4E-18 1.2E-22 153.7 24.8 267 109-450 6-300 (333)
170 3fvz_A Peptidyl-glycine alpha- 99.8 1.5E-17 5.3E-22 148.8 28.8 247 108-390 23-321 (329)
171 1jmx_B Amine dehydrogenase; ox 99.8 7.5E-18 2.5E-22 152.4 25.6 244 110-401 44-335 (349)
172 2oiz_A Aromatic amine dehydrog 99.8 4.9E-18 1.7E-22 153.8 23.9 259 101-408 44-353 (361)
173 1q7f_A NHL, brain tumor CG1071 99.8 5.5E-17 1.9E-21 142.4 29.5 234 148-456 27-276 (286)
174 2z2n_A Virginiamycin B lyase; 99.8 6.1E-16 2.1E-20 136.5 36.2 277 104-455 10-291 (299)
175 3pe7_A Oligogalacturonate lyas 99.8 3.5E-18 1.2E-22 157.0 22.0 218 133-395 13-277 (388)
176 3azo_A Aminopeptidase; POP fam 99.8 3.9E-18 1.3E-22 168.1 23.5 258 100-401 59-379 (662)
177 3fvz_A Peptidyl-glycine alpha- 99.8 1.9E-17 6.7E-22 148.2 25.0 237 150-456 23-318 (329)
178 4a5s_A Dipeptidyl peptidase 4 99.8 1.2E-16 4E-21 159.2 27.7 166 100-272 48-296 (740)
179 2xdw_A Prolyl endopeptidase; a 99.8 4.5E-16 1.5E-20 154.3 27.9 247 118-408 81-385 (710)
180 3e5z_A Putative gluconolactona 99.8 1.3E-15 4.4E-20 134.3 27.8 239 140-455 17-282 (296)
181 3c5m_A Oligogalacturonate lyas 99.7 5.1E-17 1.7E-21 149.7 19.0 242 133-448 13-301 (396)
182 3e5z_A Putative gluconolactona 99.7 8.2E-16 2.8E-20 135.6 26.0 241 102-394 21-289 (296)
183 2xdw_A Prolyl endopeptidase; a 99.7 3.6E-16 1.2E-20 155.0 26.0 244 106-393 122-416 (710)
184 1rwi_B Serine/threonine-protei 99.7 1.3E-15 4.6E-20 132.2 25.3 240 110-393 25-266 (270)
185 2bkl_A Prolyl endopeptidase; m 99.7 6.5E-17 2.2E-21 159.8 18.3 242 106-394 118-400 (695)
186 2bkl_A Prolyl endopeptidase; m 99.7 5.3E-16 1.8E-20 153.3 24.5 245 118-408 77-368 (695)
187 2qc5_A Streptogramin B lactona 99.7 5.2E-14 1.8E-18 124.2 34.7 269 106-448 17-290 (300)
188 2gop_A Trilobed protease; beta 99.7 1.1E-15 3.8E-20 138.0 24.1 233 109-403 59-341 (347)
189 2dg1_A DRP35, lactonase; beta 99.7 1.9E-14 6.3E-19 129.2 31.2 238 101-382 37-301 (333)
190 3dsm_A Uncharacterized protein 99.7 8.7E-15 3E-19 130.7 28.8 244 109-400 44-310 (328)
191 3no2_A Uncharacterized protein 99.7 3.9E-15 1.3E-19 129.0 25.3 236 119-402 4-263 (276)
192 1rwi_B Serine/threonine-protei 99.7 1.2E-14 4.2E-19 126.1 24.3 234 152-456 25-260 (270)
193 3dsm_A Uncharacterized protein 99.7 1.5E-14 5.3E-19 129.1 25.0 253 128-456 15-298 (328)
194 2mad_H Methylamine dehydrogena 99.7 4.1E-13 1.4E-17 121.5 33.1 265 115-456 27-346 (373)
195 1qks_A Cytochrome CD1 nitrite 99.7 7.9E-13 2.7E-17 125.7 34.1 257 100-400 189-547 (567)
196 1yr2_A Prolyl oligopeptidase; 99.6 1.5E-14 5.2E-19 143.9 23.1 246 117-408 115-412 (741)
197 1yr2_A Prolyl oligopeptidase; 99.6 1.6E-14 5.5E-19 143.7 23.1 244 106-394 160-444 (741)
198 2z2n_A Virginiamycin B lyase; 99.6 7.8E-13 2.7E-17 116.5 31.4 236 148-455 12-250 (299)
199 1qks_A Cytochrome CD1 nitrite 99.6 4.3E-13 1.5E-17 127.5 31.3 258 118-448 165-458 (567)
200 3no2_A Uncharacterized protein 99.6 9.2E-14 3.2E-18 120.3 24.5 192 161-401 4-205 (276)
201 3sjl_D Methylamine dehydrogena 99.6 3E-13 1E-17 120.6 26.4 272 114-455 38-358 (386)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 5E-13 1.7E-17 118.7 27.8 240 106-391 15-299 (314)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 6.2E-13 2.1E-17 118.1 26.5 237 147-455 14-294 (314)
204 3sjl_D Methylamine dehydrogena 99.6 2.4E-13 8.3E-18 121.2 21.8 251 102-401 73-373 (386)
205 3hrp_A Uncharacterized protein 99.6 2.5E-12 8.6E-17 118.0 28.0 231 151-455 131-405 (409)
206 2mad_H Methylamine dehydrogena 99.6 1E-11 3.5E-16 112.3 31.4 238 113-398 70-357 (373)
207 1xip_A Nucleoporin NUP159; bet 99.6 1.7E-13 5.8E-18 122.8 17.8 170 110-298 39-230 (388)
208 3g4e_A Regucalcin; six bladed 99.6 8.4E-12 2.9E-16 109.7 28.5 214 148-408 10-246 (297)
209 3c75_H MADH, methylamine dehyd 99.6 1.3E-12 4.4E-17 118.7 23.6 263 118-455 82-397 (426)
210 2qc5_A Streptogramin B lactona 99.6 2.5E-11 8.6E-16 106.8 31.4 214 149-408 18-235 (300)
211 3hrp_A Uncharacterized protein 99.5 4.1E-12 1.4E-16 116.6 26.5 235 108-389 130-408 (409)
212 3iuj_A Prolyl endopeptidase; h 99.5 2.3E-12 7.9E-17 127.0 21.3 242 106-394 126-408 (693)
213 2qe8_A Uncharacterized protein 99.5 2.7E-12 9.1E-17 115.4 19.8 260 109-451 17-312 (343)
214 1xip_A Nucleoporin NUP159; bet 99.5 9.5E-13 3.3E-17 117.9 16.0 158 195-408 39-219 (388)
215 2ghs_A AGR_C_1268P; regucalcin 99.5 1.7E-10 5.9E-15 102.7 29.6 207 152-408 50-276 (326)
216 3g4e_A Regucalcin; six bladed 99.5 1E-10 3.5E-15 102.7 27.2 228 107-380 11-261 (297)
217 3dr2_A Exported gluconolactona 99.4 2.5E-11 8.6E-16 107.1 22.8 236 141-455 35-302 (305)
218 3dr2_A Exported gluconolactona 99.4 4.6E-11 1.6E-15 105.5 24.0 228 103-383 39-299 (305)
219 3q7m_A Lipoprotein YFGL, BAMB; 99.4 2.9E-11 9.9E-16 110.3 22.9 261 119-456 102-374 (376)
220 3c75_H MADH, methylamine dehyd 99.4 2.4E-11 8.2E-16 110.4 21.8 239 113-398 122-409 (426)
221 2ghs_A AGR_C_1268P; regucalcin 99.4 2.1E-10 7.1E-15 102.2 26.9 222 110-381 50-292 (326)
222 1yiq_A Quinohemoprotein alcoho 99.4 2.4E-11 8.1E-16 119.0 21.6 280 120-456 70-501 (689)
223 3hxj_A Pyrrolo-quinoline quino 99.4 1.8E-11 6.3E-16 109.3 17.3 262 107-455 58-319 (330)
224 1kb0_A Quinohemoprotein alcoho 99.4 5.5E-11 1.9E-15 116.2 21.1 271 120-456 77-503 (677)
225 3q7m_A Lipoprotein YFGL, BAMB; 99.4 7.9E-10 2.7E-14 100.7 27.3 231 120-399 53-304 (376)
226 1yiq_A Quinohemoprotein alcoho 99.3 9.9E-11 3.4E-15 114.7 22.1 153 120-278 121-346 (689)
227 1mda_H Methylamine dehydrogena 99.3 2.5E-11 8.4E-16 108.6 15.9 243 131-456 47-342 (368)
228 3iuj_A Prolyl endopeptidase; h 99.3 1.8E-10 6.1E-15 113.6 22.9 213 149-408 127-376 (693)
229 1mda_H Methylamine dehydrogena 99.3 1.7E-10 5.8E-15 103.2 18.9 246 102-403 60-358 (368)
230 2hz6_A Endoplasmic reticulum t 99.3 1.6E-12 5.6E-17 117.7 5.5 207 119-373 8-216 (369)
231 2hz6_A Endoplasmic reticulum t 99.3 1.4E-12 4.8E-17 118.2 5.1 195 161-407 8-207 (369)
232 1kb0_A Quinohemoprotein alcoho 99.3 3.6E-10 1.2E-14 110.5 20.0 239 119-402 127-518 (677)
233 3hxj_A Pyrrolo-quinoline quino 99.2 2.2E-09 7.7E-14 95.7 21.2 218 120-391 107-324 (330)
234 2ece_A 462AA long hypothetical 99.2 2.3E-08 7.7E-13 89.9 26.0 220 118-379 93-399 (462)
235 2qe8_A Uncharacterized protein 99.2 5.5E-10 1.9E-14 100.3 15.9 182 151-388 17-223 (343)
236 1kv9_A Type II quinohemoprotei 99.1 7.2E-09 2.5E-13 101.2 21.5 155 120-279 66-288 (668)
237 2ece_A 462AA long hypothetical 99.1 1.4E-07 4.8E-12 84.9 26.2 198 160-399 93-363 (462)
238 1npe_A Nidogen, entactin; glyc 99.1 3.2E-07 1.1E-11 78.9 27.6 242 121-408 2-256 (267)
239 1fwx_A Nitrous oxide reductase 99.1 8.7E-09 3E-13 95.9 18.0 223 161-449 100-407 (595)
240 4a2l_A BT_4663, two-component 99.0 2.7E-06 9.1E-11 85.4 36.0 238 108-395 309-575 (795)
241 4a2l_A BT_4663, two-component 99.0 8.2E-07 2.8E-11 89.1 32.1 237 111-395 133-390 (795)
242 2iwa_A Glutamine cyclotransfer 99.0 2.9E-07 9.9E-12 77.7 23.5 194 110-349 22-238 (266)
243 1kv9_A Type II quinohemoprotei 99.0 3.7E-08 1.3E-12 96.3 20.3 269 120-402 117-499 (668)
244 1npe_A Nidogen, entactin; glyc 98.9 1.1E-06 3.6E-11 75.6 26.1 221 109-373 36-263 (267)
245 2ad6_A Methanol dehydrogenase 98.9 1.3E-07 4.5E-12 90.4 21.8 154 120-279 62-290 (571)
246 1w6s_A Methanol dehydrogenase 98.9 2.3E-07 7.8E-12 88.7 23.0 158 120-280 62-297 (599)
247 1k3i_A Galactose oxidase precu 98.9 2.2E-07 7.5E-12 91.0 23.3 117 113-234 190-328 (656)
248 2iwa_A Glutamine cyclotransfer 98.9 5.3E-07 1.8E-11 76.1 21.8 161 195-400 22-190 (266)
249 2p4o_A Hypothetical protein; p 98.9 2.4E-06 8.3E-11 75.0 26.8 227 109-382 32-279 (306)
250 2fp8_A Strictosidine synthase; 98.9 2.7E-06 9.1E-11 75.4 26.5 207 151-401 19-278 (322)
251 2ad6_A Methanol dehydrogenase 98.9 6.1E-07 2.1E-11 85.8 23.5 152 120-279 115-344 (571)
252 3v9f_A Two-component system se 98.9 1.2E-05 4.1E-10 80.6 33.7 240 109-396 211-483 (781)
253 2p4o_A Hypothetical protein; p 98.9 4.9E-06 1.7E-10 73.0 27.5 210 151-408 32-260 (306)
254 3v9f_A Two-component system se 98.8 2.4E-05 8.1E-10 78.4 35.4 240 108-394 257-527 (781)
255 3nol_A Glutamine cyclotransfer 98.8 1.9E-06 6.6E-11 71.8 21.8 170 111-292 45-235 (262)
256 1w6s_A Methanol dehydrogenase 98.8 1.4E-06 4.8E-11 83.3 23.7 162 114-278 111-350 (599)
257 1fwx_A Nitrous oxide reductase 98.8 1E-07 3.4E-12 88.9 14.9 232 118-394 99-434 (595)
258 3nok_A Glutaminyl cyclase; bet 98.8 1.1E-06 3.8E-11 73.2 19.4 168 111-292 57-245 (268)
259 1flg_A Protein (quinoprotein e 98.8 2.4E-06 8E-11 81.9 24.4 159 120-280 117-365 (582)
260 1flg_A Protein (quinoprotein e 98.8 2.6E-06 8.8E-11 81.6 24.4 115 121-237 69-201 (582)
261 3nol_A Glutamine cyclotransfer 98.7 1.6E-06 5.6E-11 72.2 19.2 159 196-400 45-210 (262)
262 3nok_A Glutaminyl cyclase; bet 98.7 3.4E-06 1.2E-10 70.3 20.7 158 196-400 57-219 (268)
263 3v64_C Agrin; beta propeller, 98.7 2.5E-05 8.5E-10 69.8 28.2 258 108-410 33-294 (349)
264 2xe4_A Oligopeptidase B; hydro 98.7 2.7E-06 9.2E-11 84.5 23.8 157 106-270 170-354 (751)
265 1ijq_A LDL receptor, low-densi 98.7 0.00014 4.9E-09 63.9 31.1 234 123-400 4-247 (316)
266 3v65_B Low-density lipoprotein 98.7 3.1E-05 1.1E-09 70.2 27.4 254 111-409 79-336 (386)
267 3mbr_X Glutamine cyclotransfer 98.7 1E-05 3.5E-10 66.9 21.4 171 109-292 21-214 (243)
268 3mbr_X Glutamine cyclotransfer 98.6 1.7E-05 5.9E-10 65.5 22.3 160 194-399 21-187 (243)
269 2fp8_A Strictosidine synthase; 98.6 2.3E-05 7.7E-10 69.4 25.1 236 110-391 20-313 (322)
270 3sov_A LRP-6, low-density lipo 98.6 0.00014 4.8E-09 63.9 28.4 232 129-401 12-248 (318)
271 3p5b_L Low density lipoprotein 98.6 0.00035 1.2E-08 63.5 30.9 245 122-409 85-338 (400)
272 3qqz_A Putative uncharacterize 98.5 3.5E-05 1.2E-09 64.6 22.0 200 146-389 22-251 (255)
273 3v65_B Low-density lipoprotein 98.5 0.00019 6.6E-09 65.0 26.5 193 91-289 98-296 (386)
274 3v64_C Agrin; beta propeller, 98.5 0.00035 1.2E-08 62.3 27.9 176 108-289 72-253 (349)
275 2xbg_A YCF48-like protein; pho 98.5 0.00063 2.2E-08 60.1 33.0 265 108-454 35-316 (327)
276 3qqz_A Putative uncharacterize 98.4 0.00038 1.3E-08 58.3 25.3 183 103-292 21-234 (255)
277 3tc9_A Hypothetical hydrolase; 98.3 0.00022 7.7E-09 65.5 23.7 153 110-269 138-300 (430)
278 3p5b_L Low density lipoprotein 98.3 0.0018 6.2E-08 58.8 29.9 163 104-272 107-279 (400)
279 2xbg_A YCF48-like protein; pho 98.3 0.0013 4.4E-08 58.0 26.2 229 108-388 79-319 (327)
280 2xe4_A Oligopeptidase B; hydro 98.3 0.00023 8E-09 70.6 23.5 112 152-271 175-305 (751)
281 4hw6_A Hypothetical protein, I 98.2 0.00035 1.2E-08 64.3 22.5 199 151-394 139-376 (433)
282 3tc9_A Hypothetical hydrolase; 98.2 0.00037 1.3E-08 64.0 22.4 134 152-293 138-281 (430)
283 3m0c_C LDL receptor, low-densi 98.2 0.0023 7.9E-08 63.3 29.2 230 128-400 402-641 (791)
284 4hw6_A Hypothetical protein, I 98.1 0.0013 4.6E-08 60.4 23.9 154 110-269 140-303 (433)
285 1k3i_A Galactose oxidase precu 98.1 0.00022 7.4E-09 69.8 19.6 114 155-273 190-326 (656)
286 3m0c_C LDL receptor, low-densi 98.1 0.0056 1.9E-07 60.5 28.4 165 104-274 419-593 (791)
287 1n7d_A LDL receptor, low-densi 98.1 3.6E-05 1.2E-09 75.4 12.9 230 129-400 385-623 (699)
288 3s94_A LRP-6, low-density lipo 98.1 0.0049 1.7E-07 59.4 27.4 165 109-279 84-252 (619)
289 3sov_A LRP-6, low-density lipo 98.1 0.0053 1.8E-07 53.8 25.9 156 110-271 36-198 (318)
290 3kya_A Putative phosphatase; s 98.0 0.0067 2.3E-07 56.1 26.5 153 110-268 140-339 (496)
291 4a0p_A LRP6, LRP-6, low-densit 98.0 0.014 4.9E-07 56.2 29.1 234 122-400 8-246 (628)
292 1ijq_A LDL receptor, low-densi 98.0 0.0074 2.5E-07 52.9 30.7 157 108-270 29-195 (316)
293 3s94_A LRP-6, low-density lipo 98.0 0.0039 1.3E-07 60.1 24.6 230 128-399 16-251 (619)
294 3amr_A 3-phytase; beta-propell 97.9 0.0027 9.3E-08 55.3 20.9 196 161-399 39-272 (355)
295 3amr_A 3-phytase; beta-propell 97.9 0.0071 2.4E-07 52.8 23.1 162 120-290 40-237 (355)
296 2p9w_A MAL S 1 allergenic prot 97.9 0.0058 2E-07 52.8 21.9 154 196-391 15-215 (334)
297 2xzh_A Clathrin heavy chain 1; 97.8 0.011 3.8E-07 50.7 29.1 233 129-408 48-307 (365)
298 2p9w_A MAL S 1 allergenic prot 97.8 0.0021 7.1E-08 55.6 18.3 156 110-270 14-215 (334)
299 2ism_A Putative oxidoreductase 97.8 0.019 6.4E-07 51.1 24.5 104 150-258 30-152 (352)
300 1bpo_A Protein (clathrin); cla 97.8 0.02 6.8E-07 51.2 29.2 233 129-408 47-306 (494)
301 3pbp_A Nucleoporin NUP82; beta 97.7 0.0097 3.3E-07 53.1 20.5 147 116-267 28-209 (452)
302 4a0p_A LRP6, LRP-6, low-densit 97.7 0.035 1.2E-06 53.6 26.0 186 164-392 8-198 (628)
303 3kya_A Putative phosphatase; s 97.7 0.017 5.6E-07 53.5 22.4 136 152-293 140-321 (496)
304 3a9g_A Putative uncharacterize 97.6 0.029 9.9E-07 49.9 23.2 72 109-182 29-115 (354)
305 2vpj_A Kelch-like protein 12; 97.6 0.0085 2.9E-07 52.0 19.3 145 119-274 14-188 (301)
306 2ism_A Putative oxidoreductase 97.6 0.007 2.4E-07 53.9 18.9 101 109-217 31-153 (352)
307 3a9g_A Putative uncharacterize 97.5 0.043 1.5E-06 48.8 24.7 106 150-258 28-152 (354)
308 3sre_A PON1, serum paraoxonase 97.5 0.015 5.1E-07 51.4 19.5 188 170-399 81-308 (355)
309 1n7d_A LDL receptor, low-densi 97.5 0.00042 1.4E-08 67.9 10.0 156 109-270 406-571 (699)
310 3ei3_A DNA damage-binding prot 97.4 0.1 3.4E-06 54.2 27.0 226 123-391 709-999 (1158)
311 2xn4_A Kelch-like protein 2; s 97.4 0.013 4.5E-07 50.8 18.0 143 120-273 16-185 (302)
312 3ii7_A Kelch-like protein 7; p 97.3 0.049 1.7E-06 47.3 20.8 142 121-273 13-181 (306)
313 2be1_A Serine/threonine-protei 97.3 0.003 1E-07 55.2 12.4 115 163-279 11-139 (339)
314 3ott_A Two-component system se 97.2 0.22 7.4E-06 49.5 33.8 233 108-394 21-263 (758)
315 2g8s_A Glucose/sorbosone dehyd 97.2 0.11 3.8E-06 46.1 27.7 108 151-260 18-149 (353)
316 1tl2_A L10, protein (tachylect 97.2 0.011 3.8E-07 47.6 12.8 142 109-263 41-203 (236)
317 2vpj_A Kelch-like protein 12; 97.1 0.035 1.2E-06 48.1 17.1 104 161-273 14-140 (301)
318 4asc_A Kelch repeat and BTB do 97.0 0.084 2.9E-06 46.0 19.1 141 123-273 8-177 (315)
319 1zgk_A Kelch-like ECH-associat 97.0 0.058 2E-06 46.9 17.9 144 119-273 24-196 (308)
320 1xi4_A Clathrin heavy chain; a 97.0 0.085 2.9E-06 54.7 20.4 231 129-406 47-304 (1630)
321 3pbp_A Nucleoporin NUP82; beta 97.0 0.1 3.5E-06 46.7 18.4 145 209-388 31-209 (452)
322 2xn4_A Kelch-like protein 2; s 97.0 0.056 1.9E-06 46.7 17.1 63 209-273 61-136 (302)
323 3ii7_A Kelch-like protein 7; p 96.9 0.063 2.2E-06 46.5 17.3 102 163-273 13-130 (306)
324 2be1_A Serine/threonine-protei 96.9 0.024 8.3E-07 49.5 14.3 149 121-271 11-184 (339)
325 1tl2_A L10, protein (tachylect 96.9 0.026 9E-07 45.4 13.1 106 242-388 42-160 (236)
326 2g8s_A Glucose/sorbosone dehyd 96.9 0.069 2.3E-06 47.5 17.5 143 110-259 19-216 (353)
327 3ei3_A DNA damage-binding prot 96.9 0.51 1.7E-05 49.0 35.0 114 109-228 514-635 (1158)
328 1zgk_A Kelch-like ECH-associat 96.8 0.054 1.8E-06 47.1 15.7 104 161-273 24-149 (308)
329 4asc_A Kelch repeat and BTB do 96.7 0.12 4.2E-06 45.0 17.7 100 164-273 7-129 (315)
330 3ott_A Two-component system se 96.7 0.61 2.1E-05 46.3 35.4 233 108-395 145-405 (758)
331 3sre_A PON1, serum paraoxonase 96.5 0.41 1.4E-05 42.2 20.4 151 218-391 81-252 (355)
332 2xzh_A Clathrin heavy chain 1; 96.3 0.49 1.7E-05 40.7 28.3 147 114-270 72-236 (365)
333 2woz_A Kelch repeat and BTB do 96.1 0.24 8.1E-06 43.2 15.5 65 209-274 56-140 (318)
334 2woz_A Kelch repeat and BTB do 96.0 0.68 2.3E-05 40.2 21.5 134 131-273 25-187 (318)
335 2uvk_A YJHT; unknown function, 95.9 0.36 1.2E-05 42.8 16.2 24 209-232 65-98 (357)
336 3qhy_B Beta-lactamase inhibito 95.9 0.68 2.3E-05 39.4 20.3 223 110-392 25-247 (282)
337 3sbq_A Nitrous-oxide reductase 95.8 1.2 4E-05 41.5 18.5 93 123-218 73-196 (638)
338 3qhy_B Beta-lactamase inhibito 95.7 0.86 2.9E-05 38.8 19.2 184 151-391 24-207 (282)
339 1cru_A Protein (soluble quinop 95.6 1.3 4.5E-05 40.7 28.8 105 109-218 27-163 (454)
340 1bpo_A Protein (clathrin); cla 95.5 1.3 4.4E-05 39.9 28.5 148 113-270 70-235 (494)
341 2uvk_A YJHT; unknown function, 95.5 0.54 1.8E-05 41.6 15.6 63 119-183 19-97 (357)
342 1xi4_A Clathrin heavy chain; a 95.5 1.6 5.5E-05 45.7 19.9 147 114-270 71-235 (1630)
343 3das_A Putative oxidoreductase 95.4 1.2 4.2E-05 39.0 27.1 75 107-181 30-116 (347)
344 2zwa_A Leucine carboxyl methyl 95.2 1.2 4.1E-05 43.6 18.2 149 118-272 396-579 (695)
345 2zwa_A Leucine carboxyl methyl 95.0 1.4 5E-05 43.0 17.9 109 160-273 396-525 (695)
346 3s25_A Hypothetical 7-bladed b 94.5 2 6.9E-05 36.9 24.0 140 117-277 22-183 (302)
347 3das_A Putative oxidoreductase 94.2 2.7 9.1E-05 36.9 28.6 109 148-257 29-156 (347)
348 3s25_A Hypothetical 7-bladed b 94.1 2.5 8.5E-05 36.3 21.9 159 90-272 38-218 (302)
349 1cru_A Protein (soluble quinop 90.1 11 0.00038 34.5 29.3 106 150-257 26-160 (454)
350 2wg3_C Hedgehog-interacting pr 88.8 14 0.00049 33.9 21.7 52 110-161 15-79 (463)
351 4gq2_M Nucleoporin NUP120; bet 87.0 14 0.00048 37.6 14.9 38 109-146 236-273 (950)
352 3b7f_A Glycosyl hydrolase, BNR 86.0 18 0.00062 32.2 27.2 45 364-409 344-389 (394)
353 3sbq_A Nitrous-oxide reductase 85.4 8.7 0.0003 35.9 11.1 75 150-229 322-408 (638)
354 4fhn_B Nucleoporin NUP120; pro 85.1 40 0.0014 35.2 17.6 37 363-399 240-276 (1139)
355 4gq2_M Nucleoporin NUP120; bet 83.1 43 0.0015 34.1 18.6 38 362-399 237-274 (950)
356 2wg3_C Hedgehog-interacting pr 81.0 33 0.0011 31.4 27.9 109 151-260 14-158 (463)
357 3b7f_A Glycosyl hydrolase, BNR 77.2 39 0.0013 30.0 27.2 140 121-266 23-204 (394)
358 3zwu_A Alkaline phosphatase PH 69.3 20 0.00068 34.0 8.8 59 362-447 477-548 (592)
359 4a9v_A PHOX; hydrolase, beta-p 63.1 41 0.0014 31.7 9.3 60 361-447 476-548 (592)
360 3no0_A DNA gyrase subunit A; D 61.2 72 0.0025 26.7 19.2 154 108-269 67-245 (276)
361 3f7f_A Nucleoporin NUP120; nuc 60.7 18 0.00062 35.0 6.7 38 361-400 222-259 (729)
362 3no0_A DNA gyrase subunit A; D 59.8 76 0.0026 26.5 21.5 154 108-269 23-195 (276)
363 3uc1_A DNA gyrase subunit A; D 57.0 95 0.0033 26.8 19.2 156 108-269 94-278 (327)
364 4a9v_A PHOX; hydrolase, beta-p 56.5 65 0.0022 30.3 9.5 61 109-169 476-549 (592)
365 3zwu_A Alkaline phosphatase PH 55.7 51 0.0017 31.3 8.9 59 110-168 477-548 (592)
366 3uc1_A DNA gyrase subunit A; D 55.7 1E+02 0.0034 26.6 23.2 154 108-269 41-227 (327)
367 3f7f_A Nucleoporin NUP120; nuc 54.9 22 0.00076 34.4 6.3 38 109-148 222-259 (729)
368 3kci_A Probable E3 ubiquitin-p 52.0 1.3E+02 0.0043 26.6 28.1 142 121-269 63-240 (389)
369 4fhn_B Nucleoporin NUP120; pro 52.0 9.4 0.00032 39.8 3.7 39 109-147 238-276 (1139)
370 3kci_A Probable E3 ubiquitin-p 46.9 1.5E+02 0.0052 26.1 27.4 109 153-269 55-186 (389)
371 3mez_A Mannose-specific lectin 41.0 88 0.003 21.7 6.9 16 211-226 86-101 (111)
372 3mvd_K Regulator of chromosome 39.6 2.1E+02 0.007 25.5 33.8 108 152-269 76-206 (423)
373 1zi0_A DNA gyrase subunit A; b 39.1 1.8E+02 0.0061 24.7 25.0 186 160-390 1-225 (307)
374 4hvt_A Ritya.17583.B, post-pro 37.5 3E+02 0.01 26.8 27.2 34 110-143 130-169 (711)
375 1sqj_A OXG-RCBH, oligoxylogluc 36.7 3.2E+02 0.011 27.0 23.5 61 108-169 14-83 (789)
376 1q47_A Semaphorin 3A; beta pro 33.4 1.6E+02 0.0055 27.2 8.3 20 436-455 468-487 (495)
377 4gz8_A Semaphorin-3A; multi-do 32.6 2.8E+02 0.0096 26.8 10.0 20 436-455 476-495 (667)
378 1zvt_A Topoisomerase IV subuni 32.5 2.1E+02 0.0071 23.5 14.6 141 122-269 4-162 (256)
379 1suu_A DNA gyrase subunit A; t 31.5 2.4E+02 0.0083 23.9 26.2 150 117-270 5-181 (312)
380 4hvt_A Ritya.17583.B, post-pro 31.0 3.8E+02 0.013 26.1 23.3 56 337-393 318-383 (711)
381 3mvd_K Regulator of chromosome 29.7 3E+02 0.01 24.4 29.7 149 110-269 76-270 (423)
382 1suu_A DNA gyrase subunit A; t 29.3 2.6E+02 0.009 23.7 25.3 187 160-391 6-231 (312)
383 4gdk_A Ubiquitin-like protein 29.0 1.3E+02 0.0044 20.1 9.5 80 8-89 3-87 (91)
384 3mez_B Mannose-specific lectin 28.9 1.5E+02 0.005 20.6 9.4 59 112-181 26-84 (113)
385 3al9_A Plexin-A2; beta-propell 27.5 91 0.0031 29.2 5.7 22 434-455 455-476 (539)
386 1zi0_A DNA gyrase subunit A; b 27.2 2.9E+02 0.0098 23.4 26.2 148 118-269 1-175 (307)
387 3l6v_A GYRA, DNA gyrase subuni 26.1 3.3E+02 0.011 23.8 25.0 150 116-269 3-179 (370)
388 2cn3_A Xyloglucanase, beta-1,4 23.6 5.2E+02 0.018 25.2 14.4 59 109-168 23-90 (737)
389 3l6v_A GYRA, DNA gyrase subuni 22.1 4E+02 0.014 23.3 24.4 105 159-269 4-131 (370)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.5e-51 Score=380.46 Aligned_cols=309 Identities=27% Similarity=0.417 Sum_probs=275.9
Q ss_pred ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 012799 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (456)
Q Consensus 98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 177 (456)
......+.+|.++|++++|+|++++|++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++|+.|++|++|
T Consensus 98 ~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 98 PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177 (410)
T ss_dssp SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred CCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 34467789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEE
Q 012799 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYT 256 (456)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~ 256 (456)
|+.+++... .+.+|...|.+++|+| +++++++|+.|+.|++||++++.++..+.+|...|.++.+++++ .+++
T Consensus 178 d~~~~~~~~-~~~~h~~~V~~v~~~p-----~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s 251 (410)
T 1vyh_C 178 DFQGFECIR-TMHGHDHNVSSVSIMP-----NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS 251 (410)
T ss_dssp ETTSSCEEE-CCCCCSSCEEEEEECS-----SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred eCCCCceeE-EEcCCCCCEEEEEEeC-----CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEE
Confidence 999887665 5788999999999999 88999999999999999999999999999999999999999999 8999
Q ss_pred EeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe
Q 012799 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (456)
Q Consensus 257 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 336 (456)
|+.||.|++||+++++....+..|...|.+++|+|+..+........... ......+.++++|+
T Consensus 252 ~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~g~~l~sgs 315 (410)
T 1vyh_C 252 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSET----------------KKSGKPGPFLLSGS 315 (410)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----------------------CCEEEEEE
T ss_pred EcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccc----------------cccCCCCCEEEEEe
Confidence 99999999999999999999999999999999999754322111110000 00112367899999
Q ss_pred CCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeee
Q 012799 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCF 416 (456)
Q Consensus 337 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 416 (456)
.|+.|++||++.+. ....+.+|...|++++|+|+|++|++|+.||.|++||+.+++++..+.+|...|+++
T Consensus 316 ~D~~i~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l-------- 386 (410)
T 1vyh_C 316 RDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL-------- 386 (410)
T ss_dssp TTSEEEEEETTTTE-EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEE--------
T ss_pred CCCeEEEEECCCCc-eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEE--------
Confidence 99999999987654 556678899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 417 RYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+|+|++++|++|+.||+|+||
T Consensus 387 -------------------~~~~~~~~l~sgs~D~~i~vW 407 (410)
T 1vyh_C 387 -------------------DFHKTAPYVVTGSVDQTVKVW 407 (410)
T ss_dssp -------------------EECSSSSCEEEEETTSEEEEE
T ss_pred -------------------EEcCCCCEEEEEeCCCcEEEE
Confidence 899999999999999999999
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.1e-50 Score=365.20 Aligned_cols=289 Identities=22% Similarity=0.373 Sum_probs=263.2
Q ss_pred cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 012799 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (456)
Q Consensus 99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 178 (456)
+...+|.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++++|++|+.|+.|++|+
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC---ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eE
Q 012799 179 PQTGKP---SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI 254 (456)
Q Consensus 179 ~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l 254 (456)
+.++.. ....+.+|...|.++.|.+ ++ .+++++.|+.|++||+++++.+..+.+|...|.+++|+|++ .+
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 199 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLD-----DN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEE-----TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECC-----CC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEE
Confidence 987642 2234678999999999987 44 58999999999999999999999999999999999999999 89
Q ss_pred EEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799 255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (456)
Q Consensus 255 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (456)
++|+.||.|++||+++++....+.+|...|.+++|+|+ +.++++
T Consensus 200 ~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~------------------------------------~~~l~s 243 (340)
T 1got_B 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN------------------------------------GNAFAT 243 (340)
T ss_dssp EEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTT------------------------------------SSEEEE
T ss_pred EEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCC------------------------------------CCEEEE
Confidence 99999999999999999999999999999999999998 567999
Q ss_pred EeCCCcEEEEecCCCCCCccc-cccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeee
Q 012799 335 GSDDFTMFLWEPAVSKQPKTR-MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELI 413 (456)
Q Consensus 335 ~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 413 (456)
|+.|+.|++||++........ ...+...|++++|+|+|++|++|+.||.|++||+.+++.+..+.+|.++|.++
T Consensus 244 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~----- 318 (340)
T 1got_B 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL----- 318 (340)
T ss_dssp EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE-----
T ss_pred EcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEE-----
Confidence 999999999998765432221 12334579999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 414 YCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+|+|+|++|++|+.||+|+||
T Consensus 319 ----------------------~~s~dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 319 ----------------------GVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp ----------------------EECTTSSCEEEEETTSCEEEE
T ss_pred ----------------------EEcCCCCEEEEEcCCccEEec
Confidence 899999999999999999999
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.4e-50 Score=359.38 Aligned_cols=286 Identities=23% Similarity=0.387 Sum_probs=262.7
Q ss_pred cccccCCcccEEEEEECCC----CCeEEEEECCCcEEEEeCCCCcc--eeEEecCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 012799 101 SATIAGHTEAVLSVAFSPD----GRQLASGSGDTTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL 174 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~----~~~l~~~~~d~~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 174 (456)
.+.+++|.+.|++++|+|+ +++|++|+.|++|+||++.+++. ...+.+|...|.+++|++++.++++++.|++|
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i 104 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI 104 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 4567899999999999985 67999999999999999977653 44678999999999999999999999999999
Q ss_pred EEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-e
Q 012799 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-V 253 (456)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~ 253 (456)
++||+.+++... .+..+...+.+++|+| ++++|++++.||.|++||+++++....+..+...|.+++|+|++ .
T Consensus 105 ~lWd~~~~~~~~-~~~~~~~~~~~~~~sp-----dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 178 (321)
T 3ow8_A 105 RLWDLENGKQIK-SIDAGPVDAWTLAFSP-----DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKY 178 (321)
T ss_dssp EEEETTTTEEEE-EEECCTTCCCCEEECT-----TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSE
T ss_pred EEEECCCCCEEE-EEeCCCccEEEEEECC-----CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCE
Confidence 999999987765 4567788899999999 99999999999999999999999999999999999999999999 9
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEE
Q 012799 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333 (456)
Q Consensus 254 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 333 (456)
|++++.||.|++||+++++.+..+.+|..+|.+++|+|+ +.+|+
T Consensus 179 lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd------------------------------------~~~l~ 222 (321)
T 3ow8_A 179 LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPD------------------------------------SQLLV 222 (321)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTT------------------------------------SCEEE
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCC------------------------------------CCEEE
Confidence 999999999999999999999999999999999999998 56699
Q ss_pred EEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeee
Q 012799 334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELI 413 (456)
Q Consensus 334 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 413 (456)
+++.|+.|++||++.. .....+.+|...|.+++|+|++++|++|+.||.|++||+.+++++..+.+|.+.|.++
T Consensus 223 s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v----- 296 (321)
T 3ow8_A 223 TASDDGYIKIYDVQHA-NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGV----- 296 (321)
T ss_dssp EECTTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE-----
T ss_pred EEcCCCeEEEEECCCc-ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEE-----
Confidence 9999999999997754 3556678999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 414 YCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+|+|+|++|++++.||+|+||
T Consensus 297 ----------------------~~s~~g~~l~s~~~d~~i~vw 317 (321)
T 3ow8_A 297 ----------------------KYNGNGSKIVSVGDDQEIHIY 317 (321)
T ss_dssp ----------------------EECTTSSEEEEEETTCCEEEE
T ss_pred ----------------------EECCCCCEEEEEeCCCeEEEE
Confidence 899999999999999999999
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3e-49 Score=359.21 Aligned_cols=288 Identities=25% Similarity=0.396 Sum_probs=261.7
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 179 (456)
...+|.+|.+.|++++|+|++++||+|+.||+|++||..+++....+..|...|.+++|+|++.+|++|+.|+.+++|++
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~ 135 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL 135 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC-----ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC--CC
Q 012799 180 QTGKP-----SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG--DG 252 (456)
Q Consensus 180 ~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~ 252 (456)
..... ....+..|...|.++.|+| ++..+++++.|++|++||+++++++..+.+|...|.+++++| ++
T Consensus 136 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g 210 (354)
T 2pbi_B 136 TFDKNENMAAKKKSVAMHTNYLSACSFTN-----SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETG 210 (354)
T ss_dssp CCCTTCCSGGGCEEEEECSSCEEEEEECS-----SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSC
T ss_pred eccccccccccceeeeccCCcEEEEEEeC-----CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCC
Confidence 75421 1224567999999999999 889999999999999999999999999999999999999987 44
Q ss_pred -eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCE
Q 012799 253 -VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331 (456)
Q Consensus 253 -~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (456)
.|++|+.||.|++||+++++.+..+..|...|.+++|+|+ +.+
T Consensus 211 ~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~------------------------------------~~~ 254 (354)
T 2pbi_B 211 NTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPS------------------------------------GDA 254 (354)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT------------------------------------SSE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCC------------------------------------CCE
Confidence 8999999999999999999999999999999999999998 567
Q ss_pred EEEEeCCCcEEEEecCCCCCCccccc--cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEE
Q 012799 332 LVSGSDDFTMFLWEPAVSKQPKTRMT--GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIR 409 (456)
Q Consensus 332 l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 409 (456)
+++++.|+.|++||++..... ..+. .+...+.+++|+|+|++|++|+.||.|++||+.+++.+..+.+|.+.|+++
T Consensus 255 l~s~s~D~~v~lwd~~~~~~~-~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l- 332 (354)
T 2pbi_B 255 FASGSDDATCRLYDLRADREV-AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTL- 332 (354)
T ss_dssp EEEEETTSCEEEEETTTTEEE-EEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEE-
T ss_pred EEEEeCCCeEEEEECCCCcEE-EEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEE-
Confidence 999999999999998765432 2222 234578999999999999999999999999999999999999999999999
Q ss_pred eeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+|+|||++|++|+.||+|+||
T Consensus 333 --------------------------~~spdg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 333 --------------------------RVSPDGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp --------------------------EECTTSSCEEEEETTSEEEEE
T ss_pred --------------------------EECCCCCEEEEEcCCCCEEec
Confidence 899999999999999999999
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.7e-48 Score=346.84 Aligned_cols=288 Identities=22% Similarity=0.313 Sum_probs=257.8
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 179 (456)
..++|.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|..+|.+++|+|++++|++|+.|+.|++||+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC-eEEEEecCcCccEEEEEeCC-CC-eEEE
Q 012799 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGG-DG-VIYT 256 (456)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~-~l~~ 256 (456)
++++... .+.+|...|.+++|+| ++.++++|+.|++|++||++++ .....+.+|...|.+++|+| ++ .|++
T Consensus 85 ~~~~~~~-~~~~h~~~v~~~~~~~-----~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s 158 (304)
T 2ynn_A 85 NTGEKVV-DFEAHPDYIRSIAVHP-----TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (304)
T ss_dssp TTCCEEE-EEECCSSCEEEEEECS-----SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEE
T ss_pred CCCcEEE-EEeCCCCcEEEEEEcC-----CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEE
Confidence 9988765 5788999999999999 8899999999999999999887 56677889999999999999 44 8999
Q ss_pred EeCCCcEEEEECCCCeEEEEee-cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEE
Q 012799 257 GSQDCTIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (456)
Q Consensus 257 ~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (456)
|+.||+|++||++++.....+. .+...+..+.+.|.. ++.+++++
T Consensus 159 gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~----------------------------------~~~~l~s~ 204 (304)
T 2ynn_A 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP----------------------------------DKPYMITA 204 (304)
T ss_dssp EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCST----------------------------------TCCEEEEE
T ss_pred EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcC----------------------------------CCCEEEEE
Confidence 9999999999998877655554 455778888887641 25679999
Q ss_pred eCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeee
Q 012799 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYC 415 (456)
Q Consensus 336 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 415 (456)
+.|+.|++||++.. .....+.+|...|.+++|+|++++|++|+.||.|++||+.+++++..+..|...++++
T Consensus 205 s~D~~i~iWd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~------- 276 (304)
T 2ynn_A 205 SDDLTIKIWDYQTK-SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI------- 276 (304)
T ss_dssp ETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEE-------
T ss_pred cCCCeEEEEeCCCC-ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEE-------
Confidence 99999999998764 4566788999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCceeeecccccccceeEecCCC--eEEEeeCCCceEE
Q 012799 416 FRYPSNFYCVVDMSCCMSLYSWSADSR--LLLSGSKDSTLKV 455 (456)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~s~s~Dg~v~i 455 (456)
+|+|+++ ++++|+.||.+.+
T Consensus 277 --------------------~~~~~~~~~~~asg~~~g~~~~ 298 (304)
T 2ynn_A 277 --------------------ATHPTGRKNYIASGFDNGFTVL 298 (304)
T ss_dssp --------------------EECTTCGGGCEEEEETTEEEEE
T ss_pred --------------------EECCCCCceEEEEecCCceEEE
Confidence 8899885 6888888876543
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.5e-49 Score=382.13 Aligned_cols=348 Identities=20% Similarity=0.312 Sum_probs=285.6
Q ss_pred CcccEEEEEEeccce--------------EEEeecccccccccCCcccEEEEEECCCCC-eEEEEECCCcEEEEeCCCCc
Q 012799 77 SVEKVLSIVYQPQAV--------------FRIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQT 141 (456)
Q Consensus 77 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~-~l~~~~~d~~v~vwd~~~~~ 141 (456)
+..++..+.|+|+.. +.+|..+.+..++.+|.+.|++++|+|++. .|++|+.|++|++||..+++
T Consensus 102 ~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~ 181 (611)
T 1nr0_A 102 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK 181 (611)
T ss_dssp SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE
T ss_pred cCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe
Confidence 456788899988642 345556677788999999999999999987 59999999999999999888
Q ss_pred ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccccc------CcccceEEEEecccccCCCCCEEEE
Q 012799 142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS------GHKKWITGISWEPVHLNAPCRRFVS 215 (456)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~l~~ 215 (456)
....+.+|...|.+++|+|++++|++++.|++|++||+.+++....... +|...|.+++|+| ++++|++
T Consensus 182 ~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-----dg~~l~s 256 (611)
T 1nr0_A 182 FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-----DGTKIAS 256 (611)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-----TSSEEEE
T ss_pred EeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-----CCCEEEE
Confidence 8899999999999999999999999999999999999998876543222 7999999999999 9999999
Q ss_pred EeCCCcEEEEECCCCeEEE-------------------------------------------EecCcCccEEEEEeCCCC
Q 012799 216 ASKDGDARIWDVSLRKCVI-------------------------------------------CLSGHTLAVTCVKWGGDG 252 (456)
Q Consensus 216 ~~~dg~i~iwd~~~~~~~~-------------------------------------------~~~~~~~~v~~~~~~~~~ 252 (456)
++.|++|++||+++++++. .+.+|...|++++|+|++
T Consensus 257 ~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg 336 (611)
T 1nr0_A 257 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG 336 (611)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred EeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC
Confidence 9999999999998776543 335788999999999999
Q ss_pred -eEEEEeCCCcEEEEECCCCeEEEEe-ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHH---------------
Q 012799 253 -VIYTGSQDCTIKVWETTQGKLIREL-KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK--------------- 315 (456)
Q Consensus 253 -~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 315 (456)
.|++++.|++|++||+.+++....+ ..|...+.+++++++..+..+..+...+.+........
T Consensus 337 ~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~ 416 (611)
T 1nr0_A 337 KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG 416 (611)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEE
T ss_pred CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcE
Confidence 9999999999999999999887766 56888999999998877776665544333221100000
Q ss_pred -----------------------H-------HHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeE
Q 012799 316 -----------------------A-------ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365 (456)
Q Consensus 316 -----------------------~-------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 365 (456)
. ..........++++++++|+.|+.|++||+...........+|...|++
T Consensus 417 ~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~ 496 (611)
T 1nr0_A 417 LAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITS 496 (611)
T ss_dssp EEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEE
T ss_pred EEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEE
Confidence 0 0000112356789999999999999999986543211122679999999
Q ss_pred EEECCCCCEEEEEECCCcEEEEeCCC-CeEEEE--EecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCC
Q 012799 366 VYFSPDGQWVASASFDKSIKLWNGTT-GKFVAV--FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442 (456)
Q Consensus 366 ~~~sp~~~~l~s~~~dg~i~iwd~~~-~~~~~~--~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 442 (456)
++|+|+|++|++++.|+.|++||+.+ ++++.. +.+|...|+++ +|+|||+
T Consensus 497 v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v---------------------------~fspdg~ 549 (611)
T 1nr0_A 497 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV---------------------------SWSPDNV 549 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEE---------------------------EECTTSS
T ss_pred EEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEE---------------------------EECCCCC
Confidence 99999999999999999999999987 666553 34599999999 9999999
Q ss_pred eEEEeeCCCceEEC
Q 012799 443 LLLSGSKDSTLKVT 456 (456)
Q Consensus 443 ~l~s~s~Dg~v~iW 456 (456)
+|++|+.|++|+||
T Consensus 550 ~lasgs~D~~v~lW 563 (611)
T 1nr0_A 550 RLATGSLDNSVIVW 563 (611)
T ss_dssp EEEEEETTSCEEEE
T ss_pred EEEEEECCCcEEEE
Confidence 99999999999999
No 7
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.5e-49 Score=360.84 Aligned_cols=289 Identities=24% Similarity=0.433 Sum_probs=256.8
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 179 (456)
+.++|.+|.+.|++++|+|++++|++|+.||+|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.+++|++
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~ 137 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL 137 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC------CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe-----cCcCccEEEEEe
Q 012799 180 QTGK------PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-----SGHTLAVTCVKW 248 (456)
Q Consensus 180 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~ 248 (456)
.+.. .....+.+|...+.++.|.|. ++..|++|+.|++|++||+++++.+..+ .+|...|.++++
T Consensus 138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~----~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~ 213 (380)
T 3iz6_a 138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPD----QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSI 213 (380)
T ss_dssp CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSS----SSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEE
T ss_pred CCCccccCCccceeeccCCCcceEEEEEecC----CCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEe
Confidence 7542 223357789999999999882 3457999999999999999999988877 678999999999
Q ss_pred CC-CC-eEEEEeCCCcEEEEECC-CCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhcc
Q 012799 249 GG-DG-VIYTGSQDCTIKVWETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325 (456)
Q Consensus 249 ~~-~~-~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (456)
++ ++ .+++|+.||.|++||++ .++.+..+.+|...|.+++|+|+
T Consensus 214 ~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~--------------------------------- 260 (380)
T 3iz6_a 214 NSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPD--------------------------------- 260 (380)
T ss_dssp CSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTT---------------------------------
T ss_pred ecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecC---------------------------------
Confidence 87 55 89999999999999998 45778889999999999999998
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCCCCCccccc-------cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEE
Q 012799 326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT-------GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF 398 (456)
Q Consensus 326 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 398 (456)
+.++++|+.|++|++||++.+... ..+. .+...|++++|+|+|++|++|+.||.|++||+.+++.+..+
T Consensus 261 ---~~~l~s~s~D~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~ 336 (380)
T 3iz6_a 261 ---GQRFGTGSDDGTCRLFDMRTGHQL-QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL 336 (380)
T ss_dssp ---SSEEEEECSSSCEEEEETTTTEEE-EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred ---CCeEEEEcCCCeEEEEECCCCcEE-EEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE
Confidence 567999999999999998765432 2222 22335899999999999999999999999999999988877
Q ss_pred ----ecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 399 ----RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 399 ----~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.+|.+.|+++ +|+|||++|++||.||+|+||
T Consensus 337 ~~~~~~h~~~v~~l---------------------------~~s~dg~~l~sgs~D~~i~iW 371 (380)
T 3iz6_a 337 GTLQNSHEGRISCL---------------------------GLSSDGSALCTGSWDKNLKIW 371 (380)
T ss_dssp CCSCSSCCCCCCEE---------------------------EECSSSSEEEEECTTSCEEEE
T ss_pred ecccCCCCCceEEE---------------------------EECCCCCEEEEeeCCCCEEEE
Confidence 6899999999 999999999999999999999
No 8
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.5e-47 Score=342.92 Aligned_cols=281 Identities=21% Similarity=0.272 Sum_probs=239.5
Q ss_pred cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC-----------CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCe
Q 012799 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-----------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173 (456)
Q Consensus 105 ~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 173 (456)
..|...|.+++|+|||++|++++ |+++++||... .........+...|.+++|+|++ .|++|+.||+
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 45778899999999999999887 67788886321 11122233467889999999985 6889999999
Q ss_pred EEEEeCCCCCCccc---cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC
Q 012799 174 LQCWDPQTGKPSGN---PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG 250 (456)
Q Consensus 174 i~vwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 250 (456)
|++||+++++.... ...+|...|.+++|+| ++++|++|+.|+.|++||+++++++..+.+|...|.+++|++
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-----dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~ 179 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLS-----SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASP 179 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECC-----CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecC
Confidence 99999999876532 2458999999999999 999999999999999999999999999999999999999999
Q ss_pred CC--eEEEEeCCCcEEEEECCCCeEEEEee--cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccC
Q 012799 251 DG--VIYTGSQDCTIKVWETTQGKLIRELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326 (456)
Q Consensus 251 ~~--~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (456)
++ .+++++.||+|++||+++++....+. .+...+.+++++|+
T Consensus 180 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~---------------------------------- 225 (344)
T 4gqb_B 180 HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQ---------------------------------- 225 (344)
T ss_dssp SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSS----------------------------------
T ss_pred CCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCC----------------------------------
Confidence 87 78899999999999999999888774 35567899999986
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCC-CEEEEEECCCcEEEEeCCCCeEEEEEecccccE
Q 012799 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405 (456)
Q Consensus 327 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 405 (456)
++.++++|+.||.|++||++..+ .+..+.+|...|++++|+|++ ++|++|+.||+|+|||+.+++++ .+.+|.+.|
T Consensus 226 -~~~~l~sg~~dg~v~~wd~~~~~-~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V 302 (344)
T 4gqb_B 226 -QSEVFVFGDENGTVSLVDTKSTS-CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFV 302 (344)
T ss_dssp -CTTEEEEEETTSEEEEEESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCE
T ss_pred -CCcceEEeccCCcEEEEECCCCc-EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCE
Confidence 25678999999999999987654 556688999999999999998 57999999999999999998765 578999999
Q ss_pred EEEEeeeeeeecCCCCceeeecccccccceeEecCCC-eEEEeeCCCceEEC
Q 012799 406 YQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGSKDSTLKVT 456 (456)
Q Consensus 406 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~s~s~Dg~v~iW 456 (456)
+++ +|+|+++ +|++||.||+|++|
T Consensus 303 ~~v---------------------------~~sp~~~~llas~s~D~~v~~w 327 (344)
T 4gqb_B 303 RDA---------------------------TWSPLNHSLLTTVGWDHQVVHH 327 (344)
T ss_dssp EEE---------------------------EECSSSTTEEEEEETTSCEEEE
T ss_pred EEE---------------------------EEeCCCCeEEEEEcCCCeEEEE
Confidence 999 9999987 56799999999998
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.2e-47 Score=344.12 Aligned_cols=289 Identities=25% Similarity=0.420 Sum_probs=247.5
Q ss_pred ccccccCCcc-cEEEEEECCCCCeEEEEECCCcEEEEeCCCCccee---EEecCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 012799 100 CSATIAGHTE-AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF---KCTGHKNWVLCIAWSADGKHLVSGSKAGELQ 175 (456)
Q Consensus 100 ~~~~l~~h~~-~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 175 (456)
+.+++.+|.+ .|.+++|+|+|++||+|+.|++|+|||+.++.... ...+|...|.+++|+|++++|++|+.|+.++
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~ 86 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTC 86 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEE
Confidence 4567889988 99999999999999999999999999998775332 2358999999999999999999999999999
Q ss_pred EEeCCCCCC-ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC---eEEEEecCcCccEEEEEeCCC
Q 012799 176 CWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR---KCVICLSGHTLAVTCVKWGGD 251 (456)
Q Consensus 176 vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~ 251 (456)
+|++..+.. ....+.+|...|.+++|+| ++++|++|+.|+.|++||++.+ .++..+.+|...|.+++|+|+
T Consensus 87 iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-----~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~ 161 (345)
T 3fm0_A 87 IWKKNQDDFECVTTLEGHENEVKSVAWAP-----SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS 161 (345)
T ss_dssp EEEECCC-EEEEEEECCCSSCEEEEEECT-----TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSS
T ss_pred EEEccCCCeEEEEEccCCCCCceEEEEeC-----CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCC
Confidence 999987653 2235788999999999999 8999999999999999999765 456678899999999999999
Q ss_pred C-eEEEEeCCCcEEEEECCCCe--EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCC
Q 012799 252 G-VIYTGSQDCTIKVWETTQGK--LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (456)
Q Consensus 252 ~-~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (456)
+ .|++++.|+.|++||.++++ ....+.+|...|.+++|+|+
T Consensus 162 ~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~------------------------------------ 205 (345)
T 3fm0_A 162 QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS------------------------------------ 205 (345)
T ss_dssp SSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTT------------------------------------
T ss_pred CCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCC------------------------------------
Confidence 9 99999999999999998875 45678889999999999998
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCC--------------ccccc-cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCe
Q 012799 329 PERLVSGSDDFTMFLWEPAVSKQP--------------KTRMT-GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK 393 (456)
Q Consensus 329 ~~~l~~~~~dg~i~iwd~~~~~~~--------------~~~~~-~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~ 393 (456)
+++|++++.|++|++||....... ...+. .|...|.+++|+|++.+|++++.|+.|++|+...+.
T Consensus 206 g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 206 GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp SSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred CCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 667999999999999996433211 11122 388899999999999999999999999999986542
Q ss_pred --------E-EEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCC-CeEEEeeCCCceEEC
Q 012799 394 --------F-VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLKVT 456 (456)
Q Consensus 394 --------~-~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~s~s~Dg~v~iW 456 (456)
. .....+|...|+++ +|+|++ .+|++||.||+|++|
T Consensus 286 ~~~~~~~~~~~~~~~~h~~~V~~v---------------------------~~~p~~~~~laS~s~Dg~v~~W 331 (345)
T 3fm0_A 286 DPQQPTFSLTAHLHQAHSQDVNCV---------------------------AWNPKEPGLLASCSDDGEVAFW 331 (345)
T ss_dssp CTTSCCEEEEEEETTSSSSCEEEE---------------------------EECSSSTTEEEEEETTSCEEEE
T ss_pred CcceeeEEEEeeecccccCcEeEe---------------------------EEeCCCceEEEEcCCCCcEEEE
Confidence 1 12235789999999 999998 499999999999999
No 10
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.8e-46 Score=334.42 Aligned_cols=291 Identities=31% Similarity=0.504 Sum_probs=260.7
Q ss_pred ecccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 012799 96 PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ 175 (456)
Q Consensus 96 ~~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 175 (456)
|......++.+|.+.|++++|+|++++||+|+.||.|++|++.+++....+.+|...|.+++|+|++++|++++.|+.|+
T Consensus 11 ~~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 90 (312)
T ss_dssp CCCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence 33445677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eE
Q 012799 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI 254 (456)
Q Consensus 176 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l 254 (456)
+||+++++... .+.+|...|.++.|+| +++++++++.||.|++||+++++.+..+..|..+|.+++|+|++ .+
T Consensus 91 vwd~~~~~~~~-~~~~~~~~v~~~~~~~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 164 (312)
T 4ery_A 91 IWDVSSGKCLK-TLKGHSNYVFCCNFNP-----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 164 (312)
T ss_dssp EEETTTCCEEE-EEECCSSCEEEEEECS-----SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred EEECCCCcEEE-EEcCCCCCEEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEE
Confidence 99999988665 5778999999999999 88999999999999999999999999999999999999999998 89
Q ss_pred EEEeCCCcEEEEECCCCeEEEEee-cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEE
Q 012799 255 YTGSQDCTIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333 (456)
Q Consensus 255 ~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 333 (456)
++++.||.|++||+++++.+..+. .+...+..++|+|+ +++++
T Consensus 165 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~l~ 208 (312)
T 4ery_A 165 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN------------------------------------GKYIL 208 (312)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTT------------------------------------SSEEE
T ss_pred EEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCC------------------------------------CCEEE
Confidence 999999999999999998887764 45667899999998 56799
Q ss_pred EEeCCCcEEEEecCCCCCCccccccccccE---eEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799 334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLV---NHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410 (456)
Q Consensus 334 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v---~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 410 (456)
+++.|+.|++||++... ....+.+|...+ ......+++.+|++|+.||.|++||+.+++.+..+.+|.+.|.++
T Consensus 209 ~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~-- 285 (312)
T 4ery_A 209 AATLDNTLKLWDYSKGK-CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST-- 285 (312)
T ss_dssp EEETTTEEEEEETTTTE-EEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEE--
T ss_pred EEcCCCeEEEEECCCCc-EEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEE--
Confidence 99999999999987654 344455665433 233344688999999999999999999999999999999999999
Q ss_pred eeeeeecCCCCceeeecccccccceeEecCCCeEEEee--CCCceEEC
Q 012799 411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS--KDSTLKVT 456 (456)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s--~Dg~v~iW 456 (456)
+|+|++++|++++ .|++|++|
T Consensus 286 -------------------------~~~p~~~~l~s~~~~~d~~i~~W 308 (312)
T 4ery_A 286 -------------------------ACHPTENIIASAALENDKTIKLW 308 (312)
T ss_dssp -------------------------EECSSSSEEEEEECTTTCCEEEE
T ss_pred -------------------------eecCcCCceEEEEccCCccEEEe
Confidence 8999999999997 69999999
No 11
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=6.3e-47 Score=344.14 Aligned_cols=283 Identities=17% Similarity=0.236 Sum_probs=239.0
Q ss_pred ccCCcccEEEEEECCCCCeEEEEEC------CCcEEEEeCCCCcce----eEEecCCCCEEEEEEcCCCCEEEEEeCCCe
Q 012799 104 IAGHTEAVLSVAFSPDGRQLASGSG------DTTVRLWDLNTQTPM----FKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173 (456)
Q Consensus 104 l~~h~~~V~~~~~s~~~~~l~~~~~------d~~v~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 173 (456)
..+|...|++++|+|||++||+|+. |+.|++|+..++.+. ....+|...|.+++|+|++. +++++.||+
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~ 116 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA 116 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCE
Confidence 3579999999999999999999997 778999998776533 34457899999999999975 556788999
Q ss_pred EEEEeCCCCCCccc---cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC
Q 012799 174 LQCWDPQTGKPSGN---PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG 250 (456)
Q Consensus 174 i~vwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 250 (456)
|++||+.+++.... ...+|...|.+++|+| ++++|++|+.|+.|++||+++++++..+.+|...|.+++|++
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-----dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~ 191 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-----DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP 191 (357)
T ss_dssp EEEC--------CCCCEEECCCSSCEEEEEECS-----SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred EEEeeccccceeEEEeeccCCCCCCEEEEEECC-----CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcc
Confidence 99999998865431 2347899999999999 999999999999999999999999999999999999999999
Q ss_pred CC--eEEEEeCCCcEEEEECCCCeEEEEee--cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccC
Q 012799 251 DG--VIYTGSQDCTIKVWETTQGKLIRELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326 (456)
Q Consensus 251 ~~--~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (456)
++ .+++++.||.|++||+++++....+. .+...+.+++|+|+.
T Consensus 192 ~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~--------------------------------- 238 (357)
T 4g56_B 192 GKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEK--------------------------------- 238 (357)
T ss_dssp TCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTS---------------------------------
T ss_pred CCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcc---------------------------------
Confidence 76 78999999999999999988776554 466779999999872
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCC-CEEEEEECCCcEEEEeCCCCeEEEEEecccccE
Q 012799 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405 (456)
Q Consensus 327 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 405 (456)
+.++++|+.|+.|++||++... ....+.+|...|++++|+|++ ++|++|+.||+|+|||+++++++..+ +|.+.|
T Consensus 239 --~~~la~g~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V 314 (357)
T 4g56_B 239 --DDTFACGDETGNVSLVNIKNPD-SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFV 314 (357)
T ss_dssp --TTEEEEEESSSCEEEEESSCGG-GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCE
T ss_pred --cceEEEeecccceeEEECCCCc-EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCE
Confidence 5568999999999999987654 455678899999999999987 57999999999999999999887665 799999
Q ss_pred EEEEeeeeeeecCCCCceeeecccccccceeEec-CCCeEEEeeCCCceEEC
Q 012799 406 YQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA-DSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 406 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~s~s~Dg~v~iW 456 (456)
+++ +|+| |+++|+|||.||+|++|
T Consensus 315 ~~v---------------------------afsP~d~~~l~s~s~Dg~v~iW 339 (357)
T 4g56_B 315 TGV---------------------------AWSPLDHSKFTTVGWDHKVLHH 339 (357)
T ss_dssp EEE---------------------------EECSSSTTEEEEEETTSCEEEE
T ss_pred EEE---------------------------EEeCCCCCEEEEEcCCCeEEEE
Confidence 999 9998 89999999999999999
No 12
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.9e-46 Score=335.98 Aligned_cols=283 Identities=27% Similarity=0.432 Sum_probs=249.3
Q ss_pred cccccCCcccEEEEEECCCC-CeEEEEECCCcEEEEeCCCC-----cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 012799 101 SATIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL 174 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~-~~l~~~~~d~~v~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 174 (456)
..+|.+|.+.|++++|+|++ ++|++|+.|++|++|++... .++..+.+|...|.+++|+|++++|++|+.|++|
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v 89 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEE
Confidence 45789999999999999965 89999999999999998642 3466788999999999999999999999999999
Q ss_pred EEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCC---
Q 012799 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--- 251 (456)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--- 251 (456)
++||+++++... .+.+|...|.+++|+| ++.++++|+.|+.|++||++ ++++..+.+|...|.++.+.|.
T Consensus 90 ~~wd~~~~~~~~-~~~~h~~~v~~~~~~~-----~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 90 RLWDVATGETYQ-RFVGHKSDVMSVDIDK-----KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp EEEETTTTEEEE-EEECCSSCEEEEEECT-----TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC---
T ss_pred EEEECCCCCeeE-EEccCCCcEEEEEEcC-----CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCC
Confidence 999999988765 5788999999999999 88999999999999999996 5567788899999999999984
Q ss_pred ---C-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCC
Q 012799 252 ---G-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327 (456)
Q Consensus 252 ---~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (456)
+ .+++++.|+.|++||+++++....+.+|...|.+++++|+
T Consensus 163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~----------------------------------- 207 (319)
T 3frx_A 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD----------------------------------- 207 (319)
T ss_dssp ---CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTT-----------------------------------
T ss_pred CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCC-----------------------------------
Confidence 3 7999999999999999999999999999999999999998
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec-------
Q 012799 328 APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG------- 400 (456)
Q Consensus 328 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------- 400 (456)
+.+|++++.||.|++||+.... ....+. +...|.+++|+|++.+|++++.+ .+++|++..+..+..+..
T Consensus 208 -g~~l~s~~~dg~i~iwd~~~~~-~~~~~~-~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~ 283 (319)
T 3frx_A 208 -GTLIASAGKDGEIMLWNLAAKK-AMYTLS-AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSK 283 (319)
T ss_dssp -SSEEEEEETTCEEEEEETTTTE-EEEEEE-CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCG
T ss_pred -CCEEEEEeCCCeEEEEECCCCc-EEEEec-CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcccccccc
Confidence 6679999999999999987654 333343 34679999999999999988755 599999998877776643
Q ss_pred -ccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 401 -HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 401 -~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
|...+.++ +|+|||++|++|+.||.|+||
T Consensus 284 ~~~~~v~~~---------------------------~~spdg~~l~sg~~Dg~i~vW 313 (319)
T 3frx_A 284 AAEPHAVSL---------------------------AWSADGQTLFAGYTDNVIRVW 313 (319)
T ss_dssp GGCCCEEEE---------------------------EECTTSSEEEEEETTSCEEEE
T ss_pred CcCcceeEE---------------------------EECCCCCEEEEeecCceEEEE
Confidence 34567777 999999999999999999999
No 13
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=8.2e-46 Score=335.59 Aligned_cols=284 Identities=25% Similarity=0.436 Sum_probs=243.2
Q ss_pred ccccccCCcccEEEEEE-----CC-CCCeEEEEECCCcEEEEeCCCC-------cceeEEecCCCCEEEEEEcCCCCEEE
Q 012799 100 CSATIAGHTEAVLSVAF-----SP-DGRQLASGSGDTTVRLWDLNTQ-------TPMFKCTGHKNWVLCIAWSADGKHLV 166 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~-----s~-~~~~l~~~~~d~~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~ 166 (456)
+..+|.+|.+.|++++| ++ ++++||+|+.|++|++||+.+. .+...+.+|...|.+++|+|++.+++
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 92 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI 92 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence 45678999999999999 77 8999999999999999998753 34567889999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec---CcCccE
Q 012799 167 SGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---GHTLAV 243 (456)
Q Consensus 167 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v 243 (456)
+|+.|++|++||+++++... .+.+|...|.+++|+| +++++++++.|+.|++||+.... ..... .|...|
T Consensus 93 s~s~D~~v~lwd~~~~~~~~-~~~~h~~~v~~v~~sp-----~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v 165 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTYK-RFVGHQSEVYSVAFSP-----DNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDWV 165 (343)
T ss_dssp EEETTSEEEEEETTSSCEEE-EEECCCSCEEEEEECS-----STTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSCE
T ss_pred EEcCCCcEEEEECCCCcEEE-EEcCCCCcEEEEEECC-----CCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCcee
Confidence 99999999999999987665 5778999999999999 89999999999999999998443 33333 688999
Q ss_pred EEEEeCCCC-----------eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHH
Q 012799 244 TCVKWGGDG-----------VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312 (456)
Q Consensus 244 ~~~~~~~~~-----------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (456)
.+++|+|++ .+++++.||.|++|| ...+....+..|...|.+++|+|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~-------------------- 224 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPN-------------------- 224 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTT--------------------
T ss_pred eeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCC--------------------
Confidence 999999874 799999999999999 456777888899999999999998
Q ss_pred HHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCC
Q 012799 313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG 392 (456)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 392 (456)
+.+|++|+.|+.|++||+.........+ .+...|.+++|+|++++++++ .|+.|++||+.++
T Consensus 225 ----------------g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 225 ----------------GKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ 286 (343)
T ss_dssp ----------------SSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred ----------------CCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence 6679999999999999985544443333 345569999999999988765 5788999999887
Q ss_pred eEEE--EEe-----------cccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 393 KFVA--VFR-----------GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 393 ~~~~--~~~-----------~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+... .+. +|...|.++ +|+|+|++|++|+.||+|++|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---------------------------~~sp~g~~l~sg~~Dg~v~~w 336 (343)
T 2xzm_R 287 SKAPVCTIEAEPITKAEGQKGKNPQCTSL---------------------------AWNALGKKLFAGFTDGVIRTF 336 (343)
T ss_dssp CSCSEEECCCCSGGGBTTBCCSCCCEEEE---------------------------EECSSSCCEEEEETTSEEEEE
T ss_pred CCCceEEeecCcchhhhhhcCCCCceEEE---------------------------EECCCCCeEEEecCCceEEEE
Confidence 6543 333 567778888 999999999999999999998
No 14
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.9e-46 Score=342.75 Aligned_cols=286 Identities=27% Similarity=0.481 Sum_probs=248.4
Q ss_pred CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCC------------------CEEEEEEcCCCCEEEE
Q 012799 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN------------------WVLCIAWSADGKHLVS 167 (456)
Q Consensus 106 ~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~s 167 (456)
+|.+.|.+++|+|||++||+|+ ++++++|++.+++.+..+..|.. .|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999986 78999999999988877765532 4999999999999999
Q ss_pred EeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEE
Q 012799 168 GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVK 247 (456)
Q Consensus 168 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 247 (456)
|+.|+.|++||+.+++... .+.+|...|.+++|+| ++.+|++++.|+.|++||++++++...+. +...+.+++
T Consensus 141 ~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~p-----~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~ 213 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVM-ILQGHEQDIYSLDYFP-----SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVA 213 (393)
T ss_dssp EETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECT-----TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEE
T ss_pred EcCCCeEEEEECCCCcEEE-EEccCCCCEEEEEEcC-----CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEE
Confidence 9999999999999887654 5788999999999999 88999999999999999999999887775 567799999
Q ss_pred eCC-CC-eEEEEeCCCcEEEEECCCCeEEEEe-------ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHH
Q 012799 248 WGG-DG-VIYTGSQDCTIKVWETTQGKLIREL-------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (456)
Q Consensus 248 ~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (456)
++| ++ .+++|+.||.|++||+++++.+..+ .+|...|.+++|+|+
T Consensus 214 ~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-------------------------- 267 (393)
T 1erj_A 214 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD-------------------------- 267 (393)
T ss_dssp ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT--------------------------
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCC--------------------------
Confidence 999 66 8999999999999999999887776 568889999999998
Q ss_pred hhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC-----------CccccccccccEeEEEECCCCCEEEEEECCCcEEEE
Q 012799 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-----------PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387 (456)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw 387 (456)
+.++++|+.|+.|++||++.... ....+.+|...|.+++|+|++++|++|+.||.|++|
T Consensus 268 ----------g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iw 337 (393)
T 1erj_A 268 ----------GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 337 (393)
T ss_dssp ----------SSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred ----------CCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 56799999999999999875321 233566899999999999999999999999999999
Q ss_pred eCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 388 NGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 388 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
|..+++.+..+.+|.+.|.++.|... ..|+|++++|++|+.||+|+||
T Consensus 338 d~~~~~~~~~l~~h~~~v~~v~~~~~---------------------~~~~p~~~~l~sgs~Dg~i~iW 385 (393)
T 1erj_A 338 DKKSGNPLLMLQGHRNSVISVAVANG---------------------SSLGPEYNVFATGSGDCKARIW 385 (393)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSS---------------------CTTCTTCEEEEEEETTSEEEEE
T ss_pred ECCCCeEEEEECCCCCCEEEEEecCC---------------------cCcCCCCCEEEEECCCCcEEEC
Confidence 99999999999999999999943100 0234588999999999999999
No 15
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-46 Score=334.74 Aligned_cols=288 Identities=23% Similarity=0.371 Sum_probs=235.7
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCC--cceeEE-ec-CCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 012799 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ--TPMFKC-TG-HKNWVLCIAWSADGKHLVSGSKAGELQ 175 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~ 175 (456)
+.++|.+|.++|.+++|+|+ +||+|+.|++|++||+.++ +....+ .+ |...|.+++|+|++++|++|+.|++|+
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~ 83 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS 83 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 45678899999999999987 9999999999999999875 334445 34 999999999999999999999999999
Q ss_pred EEeCCCCC------CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC----CeEEEEecCcCccEEE
Q 012799 176 CWDPQTGK------PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL----RKCVICLSGHTLAVTC 245 (456)
Q Consensus 176 vwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~ 245 (456)
+||++... .....+.+|...|.+++|+| ++++|++|+.|+.|++||++. .+++..+.+|...|.+
T Consensus 84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-----~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~ 158 (330)
T 2hes_X 84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-----DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH 158 (330)
T ss_dssp EEEC-------CCCEEEEEEC----CEEEEEECT-----TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEE
T ss_pred EEEcccCcCccccceeEEEEcCCCCcEEEEEECC-----CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEE
Confidence 99986432 11224678999999999999 899999999999999999943 3567788999999999
Q ss_pred EEeCCCC-eEEEEeCCCcEEEEECCCC--eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhh
Q 012799 246 VKWGGDG-VIYTGSQDCTIKVWETTQG--KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322 (456)
Q Consensus 246 ~~~~~~~-~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (456)
++|+|++ .|++++.|++|++||..++ +++..+.+|...|.+++|+|+.
T Consensus 159 v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----------------------------- 209 (330)
T 2hes_X 159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTE----------------------------- 209 (330)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSS-----------------------------
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCC-----------------------------
Confidence 9999998 9999999999999999876 6788899999999999999872
Q ss_pred hccCCCCCEEEEEeCCCcEEEEecCCCCC-------Cccccc-cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCe-
Q 012799 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQ-------PKTRMT-GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK- 393 (456)
Q Consensus 323 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~-~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~- 393 (456)
.+.++++++.|++|++||+..... ....+. .|...|.+++|++++ +|++++.||.|++||..+++
T Consensus 210 -----~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~ 283 (330)
T 2hes_X 210 -----GVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEW 283 (330)
T ss_dssp -----SSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEE
T ss_pred -----CeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCce
Confidence 134599999999999999765321 122233 388999999999765 79999999999999998874
Q ss_pred -EEEE-Eecccc-cEEEEEeeeeeeecCCCCceeeecccccccceeEec--CCCeEEEeeCCCceEEC
Q 012799 394 -FVAV-FRGHVG-PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA--DSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 394 -~~~~-~~~~~~-~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~s~s~Dg~v~iW 456 (456)
.+.. +.+|.. .|.++ +|+| ++++|++|+.||+|+||
T Consensus 284 ~~~~~~~~~h~~~~v~~v---------------------------~~~~~~~~~~las~s~Dg~v~~W 324 (330)
T 2hes_X 284 KVFAKRALCHGVYEINVV---------------------------KWLELNGKTILATGGDDGIVNFW 324 (330)
T ss_dssp EEEEEESCTTTTSCEEEE---------------------------EEC-----CCEEEEETTSEEEEE
T ss_pred EEEeccccccccceEEEE---------------------------EEecCCCceEEEEecCCCcEEEE
Confidence 3333 357877 89999 8899 78999999999999999
No 16
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.6e-45 Score=355.21 Aligned_cols=350 Identities=22% Similarity=0.261 Sum_probs=273.0
Q ss_pred ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc--ceeEEecCCCCEEEEEEcCCCCEEEEEeCC----
Q 012799 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKA---- 171 (456)
Q Consensus 98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---- 171 (456)
+....+|.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++ ....+.+|.+.|.+++|+|++++|++++.+
T Consensus 49 ~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~ 128 (611)
T 1nr0_A 49 LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 128 (611)
T ss_dssp SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCS
T ss_pred cccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCce
Confidence 45677889999999999999999999999999999999997543 345778999999999999999999998875
Q ss_pred CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCC-EEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC
Q 012799 172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG 250 (456)
Q Consensus 172 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 250 (456)
+.|++||. ++... .+.+|...|.+++|+| ++. .|++|+.|++|++||..++++...+.+|...|.+++|+|
T Consensus 129 ~~v~~wd~--~~~~~-~l~gh~~~v~~v~f~p-----~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp 200 (611)
T 1nr0_A 129 GHVFLFDT--GTSNG-NLTGQARAMNSVDFKP-----SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP 200 (611)
T ss_dssp EEEEETTT--CCBCB-CCCCCSSCEEEEEECS-----SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT
T ss_pred eEEEEeeC--CCCcc-eecCCCCCceEEEECC-----CCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC
Confidence 47888874 44443 5789999999999999 665 699999999999999999999999999999999999999
Q ss_pred CC-eEEEEeCCCcEEEEECCCCeEEEEee-------cCCcceEEEEecCcce-eeeccccCCCCccCChHHHHHHHH---
Q 012799 251 DG-VIYTGSQDCTIKVWETTQGKLIRELK-------GHGHWVNSLALSTEYA-LRTGAFDHTGKQYSSPEEMKKAAL--- 318 (456)
Q Consensus 251 ~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--- 318 (456)
++ .|++++.|++|++||+.+++.+..+. +|...|.+++|+|++. +.+++.+...+.|...........
T Consensus 201 dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~ 280 (611)
T 1nr0_A 201 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 280 (611)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence 99 99999999999999999999988884 6999999999999864 445555665555543211000000
Q ss_pred ---hhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEE
Q 012799 319 ---ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395 (456)
Q Consensus 319 ---~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~ 395 (456)
.........++..+++++.|+.+++||..... ....+.+|...|++++|+|+|++|++++.||.|++||+.+++..
T Consensus 281 ~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~-~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~ 359 (611)
T 1nr0_A 281 TRIEDQQLGIIWTKQALVSISANGFINFVNPELGS-IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN 359 (611)
T ss_dssp SSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred CCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC-cceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Confidence 00000001145668888888888888865443 44566799999999999999999999999999999999999887
Q ss_pred EEE-ecccccEEEEEeeeeee------------ecC-------------------------CCC-c--------------
Q 012799 396 AVF-RGHVGPVYQIRFELIYC------------FRY-------------------------PSN-F-------------- 422 (456)
Q Consensus 396 ~~~-~~~~~~v~~i~~~~~~~------------~~~-------------------------~~~-~-------------- 422 (456)
..+ .+|...|.++.|..... ... +.. .
T Consensus 360 ~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~ 439 (611)
T 1nr0_A 360 RVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH 439 (611)
T ss_dssp ECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEET
T ss_pred eecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeC
Confidence 665 57888888887742100 000 000 0
Q ss_pred --eeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 423 --YCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 423 --~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.........+.+++|+|||++|++|+.||+|+||
T Consensus 440 ~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lw 475 (611)
T 1nr0_A 440 GKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVY 475 (611)
T ss_dssp TEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred CceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEE
Confidence 0000112345678999999999999999999998
No 17
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.4e-44 Score=348.73 Aligned_cols=304 Identities=34% Similarity=0.596 Sum_probs=269.8
Q ss_pred CcccEEEEEEeccc----------eEEEee-cccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeE
Q 012799 77 SVEKVLSIVYQPQA----------VFRIRP-VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK 145 (456)
Q Consensus 77 ~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~ 145 (456)
+...+..+.|.|+. .+++|. .++....+.+|...|.+++|+|++++|++++.|++|++||.. +..+..
T Consensus 261 ~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~ 339 (577)
T 2ymu_A 261 HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQT 339 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEE
Confidence 45567778887754 233443 345667889999999999999999999999999999999976 455677
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEE
Q 012799 146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW 225 (456)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 225 (456)
+.+|...|.+++|+|++++|++++.||.|++||.. ++... .+.+|...|.+++|+| ++++|++++.|+.|++|
T Consensus 340 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~-~~~~~~~~v~~~~~s~-----dg~~l~~~~~d~~v~~~ 412 (577)
T 2ymu_A 340 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ-TLTGHSSSVRGVAFSP-----DGQTIASASDDKTVKLW 412 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEE-EEECCSSCEEEEEECT-----TSSCEEEEETTSEEEEE
T ss_pred EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEE-EecCCCCCeEEEEECC-----CCCEEEEEeCCCEEEEE
Confidence 88999999999999999999999999999999964 44433 5678999999999999 99999999999999999
Q ss_pred ECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCC
Q 012799 226 DVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTG 304 (456)
Q Consensus 226 d~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 304 (456)
|. +++.+..+.+|...|++++|+|++ .+++++.|+.|++||. +++.+..+.+|...|.+++|+|+
T Consensus 413 ~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd------------ 478 (577)
T 2ymu_A 413 NR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPD------------ 478 (577)
T ss_dssp CT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTT------------
T ss_pred eC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCC------------
Confidence 95 567788889999999999999999 9999999999999996 56788889999999999999998
Q ss_pred CccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcE
Q 012799 305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384 (456)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i 384 (456)
+.++++++.|+.|++||. . ......+.+|...|++++|+|+|++|++++.||.|
T Consensus 479 ------------------------~~~las~~~d~~i~iw~~-~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v 532 (577)
T 2ymu_A 479 ------------------------GQTIASASDDKTVKLWNR-N-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 532 (577)
T ss_dssp ------------------------SCEEEEEETTSEEEEEET-T-SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred ------------------------CCEEEEEeCCCEEEEEcC-C-CCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEE
Confidence 566999999999999994 3 34666788999999999999999999999999999
Q ss_pred EEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 385 KLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 385 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
++||. +++++..+.+|.+.|+++ +|+|||++|+|++.||+|++|
T Consensus 533 ~lwd~-~~~~~~~~~~h~~~v~~~---------------------------~fs~dg~~l~s~~~D~~i~~W 576 (577)
T 2ymu_A 533 KLWNR-NGQLLQTLTGHSSSVWGV---------------------------AFSPDGQTIASASSDKTVKLW 576 (577)
T ss_dssp EEECT-TSCEEEEEECCSSCEEEE---------------------------EECTTSSCEEEEETTSCEEEE
T ss_pred EEEeC-CCCEEEEEcCCCCCEEEE---------------------------EEcCCCCEEEEEeCCCEEEEe
Confidence 99995 789999999999999999 899999999999999999999
No 18
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.4e-43 Score=318.43 Aligned_cols=285 Identities=27% Similarity=0.480 Sum_probs=245.9
Q ss_pred ccccccCCcccEEEEEECCC-CCeEEEEECCCcEEEEeCCCCc-----ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCe
Q 012799 100 CSATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQT-----PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~-~~~l~~~~~d~~v~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 173 (456)
+..+|+||.+.|++++|+|+ +++||||+.|++|+|||+.+.+ +...+.+|...|.+++|+|++++|++++.|+.
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence 35679999999999999997 6899999999999999987654 45677899999999999999999999999999
Q ss_pred EEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEE-EEecCcCccEEEEEeCCCC
Q 012799 174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV-ICLSGHTLAVTCVKWGGDG 252 (456)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~ 252 (456)
|++|+........ ....+...+....+.+ ++..+++++.|+.+++||....... ....+|...+.+++|++++
T Consensus 110 i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 110 LRLWDLTTGTTTR-RFVGHTKDVLSVAFSS-----DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp EEEEETTTTEEEE-EEECCSSCEEEEEECT-----TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred ceEEeecccceee-eecCCCCceeEEEEee-----cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence 9999998876554 4556677788888888 8899999999999999999876544 3456789999999998865
Q ss_pred ---eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCC
Q 012799 253 ---VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (456)
Q Consensus 253 ---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (456)
.+++++.|+.|++||+++++.+..+.+|...|.+++|+|+ +
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~------------------------------------~ 227 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPD------------------------------------G 227 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT------------------------------------S
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCC------------------------------------C
Confidence 6789999999999999999999999999999999999998 5
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEe---------c
Q 012799 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR---------G 400 (456)
Q Consensus 330 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------~ 400 (456)
.+|++|+.|+.|++||++.... ...+. +...|.+++|+|++.++ +++.|+.|++||++++..+..+. +
T Consensus 228 ~~l~s~s~Dg~i~iwd~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 304 (340)
T 4aow_A 228 SLCASGGKDGQAMLWDLNEGKH-LYTLD-GGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKA 304 (340)
T ss_dssp SEEEEEETTCEEEEEETTTTEE-EEEEE-CSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------C
T ss_pred CEEEEEeCCCeEEEEEeccCce-eeeec-CCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccC
Confidence 6799999999999999876543 33333 45679999999988755 55579999999999988776654 5
Q ss_pred ccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 401 HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 401 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
|...|+++ +|+|||++|++|+.||.|+||
T Consensus 305 h~~~v~~l---------------------------~~s~dg~~l~sgs~Dg~v~iW 333 (340)
T 4aow_A 305 EPPQCTSL---------------------------AWSADGQTLFAGYTDNLVRVW 333 (340)
T ss_dssp CCCCEEEE---------------------------EECTTSSEEEEEETTSCEEEE
T ss_pred CCCCEEEE---------------------------EECCCCCEEEEEeCCCEEEEE
Confidence 77788888 999999999999999999999
No 19
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-43 Score=321.53 Aligned_cols=284 Identities=17% Similarity=0.306 Sum_probs=256.3
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 180 (456)
...|.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 104 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS 104 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC-----CcEEEEECCCCe-----------EEEEecCcCc--c
Q 012799 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-----GDARIWDVSLRK-----------CVICLSGHTL--A 242 (456)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~-----------~~~~~~~~~~--~ 242 (456)
+++.... + .+...+.+++|+| ++.++++++.+ |.|++||+.... ....+..|.. .
T Consensus 105 ~~~~~~~-~-~~~~~v~~~~~~~-----~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (369)
T 3zwl_B 105 NGQCVAT-W-KSPVPVKRVEFSP-----CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177 (369)
T ss_dssp TCCEEEE-E-ECSSCEEEEEECT-----TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred CCcEEEE-e-ecCCCeEEEEEcc-----CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence 9887653 2 2788999999999 89999999999 999999987543 2334445555 8
Q ss_pred EEEEEeCCCC-eEEEEeCCCcEEEEECCC-CeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhh
Q 012799 243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320 (456)
Q Consensus 243 v~~~~~~~~~-~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (456)
+.+++|+|++ .+++++.||.|++||+++ ++.+..+..|...|.+++|+|+
T Consensus 178 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~---------------------------- 229 (369)
T 3zwl_B 178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPD---------------------------- 229 (369)
T ss_dssp EEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTT----------------------------
T ss_pred eeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCC----------------------------
Confidence 9999999998 899999999999999999 7888999999999999999998
Q ss_pred hhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCC--------------cEEE
Q 012799 321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK--------------SIKL 386 (456)
Q Consensus 321 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg--------------~i~i 386 (456)
+.++++++.|+.|++||++.... ...+. +...+.+++|+|+++++++++.++ .+++
T Consensus 230 --------~~~l~~~~~d~~i~v~d~~~~~~-~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (369)
T 3zwl_B 230 --------LTYFITSSRDTNSFLVDVSTLQV-LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARF 299 (369)
T ss_dssp --------SSEEEEEETTSEEEEEETTTCCE-EEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEE
T ss_pred --------CCEEEEecCCceEEEEECCCCce-eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEE
Confidence 56699999999999999876543 33333 678899999999999999999998 8999
Q ss_pred EeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 387 WNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 387 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
||..+++.+..+.+|...|.++ +|+|++++|++++.||.|+||
T Consensus 300 ~d~~~~~~~~~~~~~~~~v~~~---------------------------~~s~~~~~l~s~~~dg~v~iw 342 (369)
T 3zwl_B 300 YHKIFEEEIGRVQGHFGPLNTV---------------------------AISPQGTSYASGGEDGFIRLH 342 (369)
T ss_dssp EETTTCCEEEEEECCSSCEEEE---------------------------EECTTSSEEEEEETTSEEEEE
T ss_pred EecCCCcchhheecccCcEEEE---------------------------EECCCCCEEEEEcCCCeEEEE
Confidence 9999999999999999999999 999999999999999999998
No 20
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.3e-43 Score=324.63 Aligned_cols=271 Identities=27% Similarity=0.562 Sum_probs=246.6
Q ss_pred CcccEEEEEEeccc----------eEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCccee
Q 012799 77 SVEKVLSIVYQPQA----------VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF 144 (456)
Q Consensus 77 ~~~~~~~~~~~~~~----------~~~~~~~--~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~ 144 (456)
+..++..+.|.|+. .+++|.. +.+.+++.+|.+.|.+++|+|++++|++|+.|++|++||+.+++.+.
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~ 186 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR 186 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE
Confidence 56678889998864 3456653 45778899999999999999999999999999999999999999999
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEE
Q 012799 145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224 (456)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i 224 (456)
.+.+|...|.+++|+|++++|++|+.|++|++||++++.... .+.+|...|.++.|+| ++.++++|+.|+.|++
T Consensus 187 ~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~-~~~~h~~~v~~~~~~~-----~g~~l~s~s~D~~v~v 260 (410)
T 1vyh_C 187 TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK-TFTGHREWVRMVRPNQ-----DGTLIASCSNDQTVRV 260 (410)
T ss_dssp CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECT-----TSSEEEEEETTSCEEE
T ss_pred EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-EEeCCCccEEEEEECC-----CCCEEEEEcCCCeEEE
Confidence 999999999999999999999999999999999999988765 5778999999999998 8999999999999999
Q ss_pred EECCCCeEEEEecCcCccEEEEEeCCC--------------------C-eEEEEeCCCcEEEEECCCCeEEEEeecCCcc
Q 012799 225 WDVSLRKCVICLSGHTLAVTCVKWGGD--------------------G-VIYTGSQDCTIKVWETTQGKLIRELKGHGHW 283 (456)
Q Consensus 225 wd~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 283 (456)
||+.++++...+.+|...|.+++|+|+ + .+++|+.||.|++||+++++++..+.+|...
T Consensus 261 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~ 340 (410)
T 1vyh_C 261 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340 (410)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred EECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCc
Confidence 999999999999999999999999985 4 7999999999999999999999999999999
Q ss_pred eEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccE
Q 012799 284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLV 363 (456)
Q Consensus 284 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 363 (456)
|.+++|+|+ +.++++|+.|+.|++||+... .....+.+|...|
T Consensus 341 v~~v~~~~~------------------------------------g~~l~s~s~D~~i~vwd~~~~-~~~~~~~~h~~~v 383 (410)
T 1vyh_C 341 VRGVLFHSG------------------------------------GKFILSCADDKTLRVWDYKNK-RCMKTLNAHEHFV 383 (410)
T ss_dssp EEEEEECSS------------------------------------SSCEEEEETTTEEEEECCTTS-CCCEEEECCSSCE
T ss_pred EEEEEEcCC------------------------------------CCEEEEEeCCCeEEEEECCCC-ceEEEEcCCCCcE
Confidence 999999998 566999999999999997654 4556678999999
Q ss_pred eEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799 364 NHVYFSPDGQWVASASFDKSIKLWNGT 390 (456)
Q Consensus 364 ~~~~~sp~~~~l~s~~~dg~i~iwd~~ 390 (456)
++++|+|++.+|++|+.||.|++|+++
T Consensus 384 ~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 384 TSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999999999999999863
No 21
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.6e-42 Score=335.51 Aligned_cols=304 Identities=34% Similarity=0.583 Sum_probs=270.8
Q ss_pred CcccEEEEEEeccc----------eEEEee-cccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeE
Q 012799 77 SVEKVLSIVYQPQA----------VFRIRP-VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK 145 (456)
Q Consensus 77 ~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~ 145 (456)
+...+..+.|.|+. .+++|. .+++...+.+|...|.+++|+|++++|++++.|+.|++|+.. ++....
T Consensus 220 ~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~ 298 (577)
T 2ymu_A 220 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQT 298 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEE
Confidence 45566777777753 234443 345677889999999999999999999999999999999964 677788
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEE
Q 012799 146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW 225 (456)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 225 (456)
+.+|...|.+++|+|++++|++++.|+.|++||....... .+.+|...+.+++|+| ++.++++++.||.|++|
T Consensus 299 ~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~--~~~~~~~~v~~~~~s~-----~g~~l~~~~~dg~v~~~ 371 (577)
T 2ymu_A 299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ--TLTGHSSSVWGVAFSP-----DGQTIASASDDKTVKLW 371 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE--EECCCSSCEEEEEECT-----TSSEEEEEETTSEEEEE
T ss_pred EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeE--EEeCCCCCEEEEEECC-----CCCEEEEEeCCCEEEEE
Confidence 8999999999999999999999999999999998755433 4678999999999999 99999999999999999
Q ss_pred ECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCC
Q 012799 226 DVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTG 304 (456)
Q Consensus 226 d~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 304 (456)
|. +++.+..+.+|...|++++|+|++ .|++++.|+.|++||. +++.+..+..|...|.+++|+|+
T Consensus 372 ~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d------------ 437 (577)
T 2ymu_A 372 NR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD------------ 437 (577)
T ss_dssp ET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTT------------
T ss_pred cC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCC------------
Confidence 95 567788889999999999999999 8999999999999995 57788899999999999999998
Q ss_pred CccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcE
Q 012799 305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384 (456)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i 384 (456)
+.++++++.|+.|++||.. ......+.+|...|++++|+|++++|++++.|+.|
T Consensus 438 ------------------------~~~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i 491 (577)
T 2ymu_A 438 ------------------------DQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 491 (577)
T ss_dssp ------------------------SSEEEEEETTSEEEEEETT--SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred ------------------------CCEEEEEcCCCEEEEEECC--CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEE
Confidence 5669999999999999953 34566778999999999999999999999999999
Q ss_pred EEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 385 KLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 385 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
++|| .+++++..+.+|...|+++ +|+|||++|++++.||.|+||
T Consensus 492 ~iw~-~~~~~~~~~~~h~~~v~~l---------------------------~~s~dg~~l~s~~~dg~v~lw 535 (577)
T 2ymu_A 492 KLWN-RNGQLLQTLTGHSSSVRGV---------------------------AFSPDGQTIASASDDKTVKLW 535 (577)
T ss_dssp EEEE-TTSCEEEEEECCSSCEEEE---------------------------EECTTSSCEEEEETTSEEEEE
T ss_pred EEEc-CCCCEEEEEeCCCCCEEEE---------------------------EEcCCCCEEEEEECcCEEEEE
Confidence 9999 4789999999999999999 899999999999999999999
No 22
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.3e-42 Score=312.47 Aligned_cols=280 Identities=22% Similarity=0.394 Sum_probs=250.2
Q ss_pred ccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce---eEEe--cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 012799 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM---FKCT--GHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (456)
Q Consensus 104 l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~---~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 178 (456)
..+|.+.|++++|+|++++|++++ ||.|++||+.+++.. ..+. +|...|.+++|+|++++|++++.||.|++||
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 347999999999999999999998 999999999876533 3333 7999999999999999999999999999999
Q ss_pred CCCCCCc-cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEE
Q 012799 179 PQTGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYT 256 (456)
Q Consensus 179 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~ 256 (456)
+++++.. ...+..|...+.+++|+| +++++++++.||.|++||+++++.+..+..|...+.+++|+|++ .+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 200 (337)
T 1gxr_A 126 LAAPTPRIKAELTSSAPACYALAISP-----DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT 200 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CCCCCcceeeecccCCCceEEEEECC-----CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEE
Confidence 9987632 224667888999999999 88999999999999999999999999999999999999999999 9999
Q ss_pred EeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe
Q 012799 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (456)
Q Consensus 257 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 336 (456)
++.||.|++||+++++.+..+. +...+.+++++|+ +.++++++
T Consensus 201 ~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~------------------------------------~~~l~~~~ 243 (337)
T 1gxr_A 201 GGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPT------------------------------------GEWLAVGM 243 (337)
T ss_dssp EETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTT------------------------------------SSEEEEEE
T ss_pred EecCCcEEEEECCCCceEeeec-CCCceEEEEECCC------------------------------------CCEEEEEc
Confidence 9999999999999999888775 6778999999998 56699999
Q ss_pred CCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeee
Q 012799 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCF 416 (456)
Q Consensus 337 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 416 (456)
.++.|++||+.... ...+..|...|.+++|+|++++|++++.||.|++||+.+++.+... .|...+.++
T Consensus 244 ~~~~i~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~-------- 312 (337)
T 1gxr_A 244 ESSNVEVLHVNKPD--KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSC-------- 312 (337)
T ss_dssp TTSCEEEEETTSSC--EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEE--------
T ss_pred CCCcEEEEECCCCC--eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEE--------
Confidence 99999999987654 3456789999999999999999999999999999999999888554 478899999
Q ss_pred cCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 417 RYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+|+|++++|++++.||.|++|
T Consensus 313 -------------------~~s~~~~~l~~~~~dg~i~iw 333 (337)
T 1gxr_A 313 -------------------DISVDDKYIVTGSGDKKATVY 333 (337)
T ss_dssp -------------------EECTTSCEEEEEETTSCEEEE
T ss_pred -------------------EECCCCCEEEEecCCCeEEEE
Confidence 899999999999999999998
No 23
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.4e-43 Score=310.92 Aligned_cols=248 Identities=23% Similarity=0.341 Sum_probs=227.6
Q ss_pred cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC
Q 012799 141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG 220 (456)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg 220 (456)
+...++.+|.+.|.+++|+|++++|++++.||.|++||++++.... .+..|...|.+++|+| +++++++|+.|+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~-~~~~~~~~v~~~~~~~-----~~~~l~s~s~d~ 77 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR-SIQVTETPVRAGKFIA-----RKNWIIVGSDDF 77 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE-EEECCSSCEEEEEEEG-----GGTEEEEEETTS
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE-EeeccCCcEEEEEEeC-----CCCEEEEECCCC
Confidence 4466788999999999999999999999999999999999887665 5678899999999999 889999999999
Q ss_pred cEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCC-eEEEEeecCCcceEEEEecCcceeeec
Q 012799 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTG 298 (456)
Q Consensus 221 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 298 (456)
.|++||+.+++++..+.+|...|.+++|+|++ .+++|+.||+|++||++++ .....+.+|...|.+++|+|.
T Consensus 78 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~------ 151 (304)
T 2ynn_A 78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK------ 151 (304)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTT------
T ss_pred EEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCC------
Confidence 99999999999999999999999999999999 9999999999999999887 556778899999999999985
Q ss_pred cccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECC--CCCEEE
Q 012799 299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP--DGQWVA 376 (456)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~ 376 (456)
++..+++|+.|+.|++||++..........+|...+..+.|+| ++++|+
T Consensus 152 -----------------------------~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (304)
T 2ynn_A 152 -----------------------------DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (304)
T ss_dssp -----------------------------CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEE
T ss_pred -----------------------------CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEE
Confidence 2567999999999999998777666555567778899999987 778999
Q ss_pred EEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 377 SASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 377 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+|+.||.|++||+++++++..+.+|...|.++ +|+|++++|++|+.||+|+||
T Consensus 203 s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~---------------------------~~~p~~~~l~s~s~Dg~i~iW 255 (304)
T 2ynn_A 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFA---------------------------VFHPTLPIIISGSEDGTLKIW 255 (304)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSCEEEE---------------------------EECSSSSEEEEEETTSCEEEE
T ss_pred EEcCCCeEEEEeCCCCccceeeCCCCCCEEEE---------------------------EECCCCCEEEEEcCCCeEEEE
Confidence 99999999999999999999999999999999 899999999999999999999
No 24
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.7e-43 Score=326.21 Aligned_cols=285 Identities=17% Similarity=0.225 Sum_probs=254.1
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc------ceeEEecCCCCEEEEEEcCC----C---CEEE
Q 012799 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT------PMFKCTGHKNWVLCIAWSAD----G---KHLV 166 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~------~~~~~~~~~~~v~~~~~~~~----~---~~l~ 166 (456)
..+.+.+|.+.|++++|+| ++|++|+.||.|++||+.+++ ....+.+|...|.+++|+|+ + ++|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 3467889999999999999 799999999999999999887 78888999999999999999 9 9999
Q ss_pred EEeCCCeEEEEeCCCCCC-----ccccccCc-----ccceEEEEec----ccccCCCCCE-EEEEeCCCcEEEEECCC--
Q 012799 167 SGSKAGELQCWDPQTGKP-----SGNPLSGH-----KKWITGISWE----PVHLNAPCRR-FVSASKDGDARIWDVSL-- 229 (456)
Q Consensus 167 s~~~dg~i~vwd~~~~~~-----~~~~~~~~-----~~~v~~~~~~----~~~~~~~~~~-l~~~~~dg~i~iwd~~~-- 229 (456)
+++.||.|++||+.+++. .. .+..| ...|.+++|+ | ++.. |++++.||.|++||+++
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFE-KLDLLDSDMKKHSFWALKWGASNDR-----LLSHRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEE-EECCSCTTGGGSCEEEEEEECCC---------CEEEEEEETTSCEEEEEEESSS
T ss_pred EEcCCCCEEEEEccCCcccccccce-eecccccccCCCcEEEEEEeeccCC-----CCceEEEEEeCCCcEEEEeCCccc
Confidence 999999999999998875 33 45667 5899999999 7 8899 99999999999999988
Q ss_pred ----CeEEE-----Ee-------cCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeec---C---CcceEEE
Q 012799 230 ----RKCVI-----CL-------SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG---H---GHWVNSL 287 (456)
Q Consensus 230 ----~~~~~-----~~-------~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~---~~~i~~~ 287 (456)
++.+. .+ ..|...|.+++|+|++.+++++.||.|++||+++++.+..+.. | ...+.++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i 239 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV 239 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred cccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceE
Confidence 55544 55 4588999999999988888899999999999999999999998 8 9999999
Q ss_pred EecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC---CcEEEEecCCCCCCcccccc------
Q 012799 288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD---FTMFLWEPAVSKQPKTRMTG------ 358 (456)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~------ 358 (456)
+|+|+ +.++++++.| +.|++||++... ....+.+
T Consensus 240 ~~~~~------------------------------------~~~l~~~~~d~~~g~i~i~d~~~~~-~~~~~~~~~~~~~ 282 (397)
T 1sq9_A 240 KFSPQ------------------------------------GSLLAIAHDSNSFGCITLYETEFGE-RIGSLSVPTHSSQ 282 (397)
T ss_dssp EECSS------------------------------------TTEEEEEEEETTEEEEEEEETTTCC-EEEEECBC-----
T ss_pred EECCC------------------------------------CCEEEEEecCCCCceEEEEECCCCc-ccceeccCccccc
Confidence 99998 5669999999 999999987654 4555666
Q ss_pred -------ccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEe------cc---------------cccEEEEEe
Q 012799 359 -------HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR------GH---------------VGPVYQIRF 410 (456)
Q Consensus 359 -------~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~---------------~~~v~~i~~ 410 (456)
|...|.+++|+|++++|++++.||.|++||+.+++.+..+. +| ..+|+++
T Consensus 283 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~-- 360 (397)
T 1sq9_A 283 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV-- 360 (397)
T ss_dssp ---CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE--
T ss_pred ccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEE--
Confidence 99999999999999999999999999999999999999999 88 8899999
Q ss_pred eeeeeecCCCCceeeecccccccceeEecCC----------CeEEEeeCCCceEEC
Q 012799 411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADS----------RLLLSGSKDSTLKVT 456 (456)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg----------~~l~s~s~Dg~v~iW 456 (456)
+|+|+| ++|++|+.||.|+||
T Consensus 361 -------------------------~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw 391 (397)
T 1sq9_A 361 -------------------------KFLKKGWRSGMGADLNESLCCVCLDRSIRWF 391 (397)
T ss_dssp -------------------------EEECTTTSBSTTCTTSCEEEEEETTTEEEEE
T ss_pred -------------------------EeccccccccccccccceEEEecCCCcEEEE
Confidence 999998 799999999999999
No 25
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8e-43 Score=312.28 Aligned_cols=272 Identities=24% Similarity=0.405 Sum_probs=243.5
Q ss_pred cCcccEEEEEEecc--------------ceEEEeecc----cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeC
Q 012799 76 VSVEKVLSIVYQPQ--------------AVFRIRPVN----RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL 137 (456)
Q Consensus 76 ~~~~~~~~~~~~~~--------------~~~~~~~~~----~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~ 137 (456)
.+.+.+..+.|.|. ..+++|... .+...+.+|...|.+++|++++.++++++.|++|++||+
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~ 109 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDL 109 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 45667777777552 234555432 234578999999999999999999999999999999999
Q ss_pred CCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEe
Q 012799 138 NTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS 217 (456)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~ 217 (456)
.+++.+..+..|...+.+++|+|++++|++++.||.|++|++++++... .+..|...+.+++|+| ++++|++|+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~-~~~~~~~~v~~~~~sp-----dg~~lasg~ 183 (321)
T 3ow8_A 110 ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY-SLDTRGKFILSIAYSP-----DGKYLASGA 183 (321)
T ss_dssp TTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEE-EEECSSSCEEEEEECT-----TSSEEEEEE
T ss_pred CCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeE-EecCCCceEEEEEECC-----CCCEEEEEc
Confidence 9999999999999999999999999999999999999999999887654 4667888999999999 999999999
Q ss_pred CCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceee
Q 012799 218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR 296 (456)
Q Consensus 218 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 296 (456)
.||.|++||+++++.+..+.+|..+|.+++|+|++ .|++++.||.|++||+++++....+.+|...|.+++|+|+
T Consensus 184 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~---- 259 (321)
T 3ow8_A 184 IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD---- 259 (321)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT----
T ss_pred CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCC----
Confidence 99999999999999999999999999999999999 8999999999999999999999999999999999999998
Q ss_pred eccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEE
Q 012799 297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA 376 (456)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 376 (456)
+.+|++++.|+.|++||+.+. .....+.+|...|.+++|+|++++|+
T Consensus 260 --------------------------------~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~h~~~v~~v~~s~~g~~l~ 306 (321)
T 3ow8_A 260 --------------------------------DTHFVSSSSDKSVKVWDVGTR-TCVHTFFDHQDQVWGVKYNGNGSKIV 306 (321)
T ss_dssp --------------------------------SSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred --------------------------------CCEEEEEeCCCcEEEEeCCCC-EEEEEEcCCCCcEEEEEECCCCCEEE
Confidence 566999999999999997654 45566788999999999999999999
Q ss_pred EEECCCcEEEEeCC
Q 012799 377 SASFDKSIKLWNGT 390 (456)
Q Consensus 377 s~~~dg~i~iwd~~ 390 (456)
+++.||.|++||..
T Consensus 307 s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 307 SVGDDQEIHIYDCP 320 (321)
T ss_dssp EEETTCCEEEEECC
T ss_pred EEeCCCeEEEEeCC
Confidence 99999999999963
No 26
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.1e-42 Score=344.66 Aligned_cols=303 Identities=28% Similarity=0.461 Sum_probs=246.6
Q ss_pred cccccCCcccEEEEEECCCC-CeEEEEECCCcEEEEeCCCCc-----ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 012799 101 SATIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQT-----PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL 174 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~-~~l~~~~~d~~v~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 174 (456)
...|++|.+.|++++|+|++ ++|++|+.|++|++|++.+.. ....+.+|...|.+++|+|++++|++|+.||.|
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v 454 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence 34688999999999999864 799999999999999997643 346788999999999999999999999999999
Q ss_pred EEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe---cCcCccEEEEEeCCC
Q 012799 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SGHTLAVTCVKWGGD 251 (456)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~ 251 (456)
++||+.++.... .+.+|...|.+++|+| ++++|++++.|++|++||.......... .+|...|.+++|+|+
T Consensus 455 ~vwd~~~~~~~~-~~~~h~~~v~~~~~s~-----~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 455 RLWDLAAGVSTR-RFVGHTKDVLSVAFSL-----DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp EEEETTTTEEEE-EEECCSSCEEEEEECT-----TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred EEEECCCCccee-EEeCCCCCEEEEEEeC-----CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence 999999887665 5778999999999999 8999999999999999998765544333 468889999999997
Q ss_pred C---eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCC
Q 012799 252 G---VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (456)
Q Consensus 252 ~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (456)
+ .+++++.||.|++||+++++....+.+|...|.+++++|+
T Consensus 529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spd------------------------------------ 572 (694)
T 3dm0_A 529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPD------------------------------------ 572 (694)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT------------------------------------
T ss_pred CCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCC------------------------------------
Confidence 6 6999999999999999999999999999999999999998
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408 (456)
Q Consensus 329 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 408 (456)
+.++++++.||.|++||++..... ..+ .+...|.+++|+|++.+|++++ |+.|++||+++++.+..+..+.......
T Consensus 573 g~~l~sg~~Dg~i~iwd~~~~~~~-~~~-~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 649 (694)
T 3dm0_A 573 GSLCASGGKDGVVLLWDLAEGKKL-YSL-EANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEK 649 (694)
T ss_dssp SSEEEEEETTSBCEEEETTTTEEE-ECC-BCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC-----
T ss_pred CCEEEEEeCCCeEEEEECCCCceE-EEe-cCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhcccccccccc
Confidence 567999999999999998766433 323 3456799999999999888776 5669999999999988876543221000
Q ss_pred EeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
... ............+..++|+|||++|++|+.||+|+||
T Consensus 650 ~~~--------~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW 689 (694)
T 3dm0_A 650 ADN--------SGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689 (694)
T ss_dssp -------------------CCCCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ccc--------cccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEE
Confidence 000 0000000011123445999999999999999999999
No 27
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-43 Score=328.40 Aligned_cols=323 Identities=14% Similarity=0.162 Sum_probs=244.8
Q ss_pred ecccccccc-cCCcccEEEEEECC-CCCeEEEEECCCcEEEEeCCC---Cc---ceeEEecCCCCEEEEEEcCCCCEEEE
Q 012799 96 PVNRCSATI-AGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNT---QT---PMFKCTGHKNWVLCIAWSADGKHLVS 167 (456)
Q Consensus 96 ~~~~~~~~l-~~h~~~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~---~~---~~~~~~~~~~~v~~~~~~~~~~~l~s 167 (456)
+.++.+.++ .+|.+.|++++|+| ++++||+|+.||+|++||+.+ +. ....+ +|...|.+++|+|++++|++
T Consensus 50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s 128 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAV 128 (437)
T ss_dssp CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEE
Confidence 445566777 89999999999999 999999999999999999876 33 23333 59999999999999999999
Q ss_pred EeCCCeEEEEeCC---CCCCccccccC------------cccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE
Q 012799 168 GSKAGELQCWDPQ---TGKPSGNPLSG------------HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC 232 (456)
Q Consensus 168 ~~~dg~i~vwd~~---~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 232 (456)
++.||.|++||++ +++... .... +...+.++.+. ..+++.++++++.||.|++||++++++
T Consensus 129 ~s~dg~i~vwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~d~~i~iwd~~~~~~ 204 (437)
T 3gre_A 129 SSKDGQIIVLKVNHYQQESEVK-FLNCECIRKINLKNFGKNEYAVRMRAF---VNEEKSLLVALTNLSRVIIFDIRTLER 204 (437)
T ss_dssp EETTSEEEEEEEEEEEETTEEE-EEEEEEEEEEEGGGGSSCCCEEEEEEE---ECSSCEEEEEEETTSEEEEEETTTCCE
T ss_pred EeCCCEEEEEEeccccCCceee-ccccceeEEEEccCcccccCceEEEEE---EcCCCCEEEEEeCCCeEEEEeCCCCee
Confidence 9999999999995 444322 1111 33344444422 122788999999999999999999999
Q ss_pred EEEecC--cCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCcceEEEEecCcceeeeccccCCCCccC
Q 012799 233 VICLSG--HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYS 308 (456)
Q Consensus 233 ~~~~~~--~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 308 (456)
+..+.. |...|++++|+|++ .|++|+.||.|++||+++++.+..+. .+...|.+++++|..
T Consensus 205 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------- 269 (437)
T 3gre_A 205 LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFY--------------- 269 (437)
T ss_dssp EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTT---------------
T ss_pred eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecccc---------------
Confidence 999988 89999999999999 89999999999999999999999886 678899999877651
Q ss_pred ChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcc-----------------------cccc--ccccE
Q 012799 309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT-----------------------RMTG--HQQLV 363 (456)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----------------------~~~~--~~~~v 363 (456)
.+++.++++++.||.|++||++....... .+.+ |...|
T Consensus 270 -----------------s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 332 (437)
T 3gre_A 270 -----------------GKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNAL 332 (437)
T ss_dssp -----------------CTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGG
T ss_pred -----------------CCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCce
Confidence 12355799999999999999875542111 1122 77889
Q ss_pred eEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccE---EEEEeeeeeeecC-------CCCceeeeccccccc
Q 012799 364 NHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV---YQIRFELIYCFRY-------PSNFYCVVDMSCCMS 433 (456)
Q Consensus 364 ~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v---~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~ 433 (456)
++++|+ ++++|++|+.||.|++||+.+++.+..+.+|.... ....+.....+.. .............|.
T Consensus 333 ~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 411 (437)
T 3gre_A 333 STISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIIN 411 (437)
T ss_dssp CCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEE
T ss_pred EEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccccccccee
Confidence 999999 78999999999999999999999988888754321 1111111000000 000000011344566
Q ss_pred ceeEecC--CCeEEEeeCCCceEEC
Q 012799 434 LYSWSAD--SRLLLSGSKDSTLKVT 456 (456)
Q Consensus 434 ~~~~s~d--g~~l~s~s~Dg~v~iW 456 (456)
+++|+++ +.+|++|+.||.|+||
T Consensus 412 ~i~~~~~~~~~~l~s~~~dG~I~iw 436 (437)
T 3gre_A 412 SISTCEVDETPLLVACDNSGLIGIF 436 (437)
T ss_dssp EEEEEESSSSEEEEEEETTSCEEEE
T ss_pred eEeeeccCCceEEEEEcCCceEEEe
Confidence 6699988 7899999999999999
No 28
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.7e-42 Score=314.67 Aligned_cols=291 Identities=19% Similarity=0.283 Sum_probs=244.5
Q ss_pred ccccCCcccEEEEEECCCCCeE-EEEEC---CCcEEEEeCCCCcceeEE-ecCCCCEEEEEEcCC---CCEEEEEeCCCe
Q 012799 102 ATIAGHTEAVLSVAFSPDGRQL-ASGSG---DTTVRLWDLNTQTPMFKC-TGHKNWVLCIAWSAD---GKHLVSGSKAGE 173 (456)
Q Consensus 102 ~~l~~h~~~V~~~~~s~~~~~l-~~~~~---d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~---~~~l~s~~~dg~ 173 (456)
+.+.+|.+.|.+++|+|+++.+ ++|+. ||.|++||+.+++..... .+|...|.+++|+|+ +++|++|+.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 4457899999999999999655 45555 899999999988765443 379999999999998 699999999999
Q ss_pred EEEEeCCCCCCccccccCcccceEEEEeccc-ccCCCCCEEEEEeCCCcEEEEECCCCe-EEEEecCcCc----cEEEEE
Q 012799 174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPV-HLNAPCRRFVSASKDGDARIWDVSLRK-CVICLSGHTL----AVTCVK 247 (456)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~----~v~~~~ 247 (456)
|++||+.+++.....+.+|...|.++.|.+. .++++++.|++++.||.|++||+++++ .+..+..|.. .+.+++
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVA 171 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEE
Confidence 9999999888334467889999999977652 344588999999999999999999886 6677765544 899998
Q ss_pred ----eCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecC---cceeeeccccCCCCccCChHHHHHHHHh
Q 012799 248 ----WGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALST---EYALRTGAFDHTGKQYSSPEEMKKAALE 319 (456)
Q Consensus 248 ----~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (456)
|++++ .+++++.||.|++||+++++.... ..+...+.+++|+| +
T Consensus 172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~--------------------------- 223 (357)
T 3i2n_A 172 FGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDIS--------------------------- 223 (357)
T ss_dssp EECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSS---------------------------
T ss_pred EEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCC---------------------------
Confidence 67888 999999999999999999887554 55788999999998 5
Q ss_pred hhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcc----ccccccccEeEEEECCCCC-EEEEEECCCcEEEEeCCCC--
Q 012799 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT----RMTGHQQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTTG-- 392 (456)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~~-- 392 (456)
+.++++++.||.|++||++....... ...+|...|++++|+|+++ +|++|+.||.|++||+.++
T Consensus 224 ---------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 294 (357)
T 3i2n_A 224 ---------MNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQ 294 (357)
T ss_dssp ---------CCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSC
T ss_pred ---------CCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcc
Confidence 56799999999999999876543222 2238999999999999998 8999999999999998754
Q ss_pred -----------------eEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEE-EeeCCCceE
Q 012799 393 -----------------KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL-SGSKDSTLK 454 (456)
Q Consensus 393 -----------------~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~-s~s~Dg~v~ 454 (456)
+.+..+.+|..+|+++ +|+|+|++|+ +++.||.|+
T Consensus 295 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~---------------------------~~s~~~~~l~~s~~~d~~i~ 347 (357)
T 3i2n_A 295 RSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSL---------------------------DWSPDKRGLCVCSSFDQTVR 347 (357)
T ss_dssp C--CCTTSCCCCCCCEEEEEEEEECCSSCEEEE---------------------------EECSSSTTEEEEEETTSEEE
T ss_pred cccccCCCCccccccccceeeccccCCCCeeEE---------------------------EEcCCCCeEEEEecCCCcEE
Confidence 4677888999999999 9999999998 899999999
Q ss_pred EC
Q 012799 455 VT 456 (456)
Q Consensus 455 iW 456 (456)
||
T Consensus 348 iw 349 (357)
T 3i2n_A 348 VL 349 (357)
T ss_dssp EE
T ss_pred EE
Confidence 99
No 29
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-41 Score=303.37 Aligned_cols=279 Identities=24% Similarity=0.348 Sum_probs=250.0
Q ss_pred cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 012799 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (456)
Q Consensus 99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 178 (456)
+..+++.+|.+.|++++| |++++|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++++.||.|++|+
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP 87 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 456788999999999999 9999999999999999999999988889999999999999999999999999999999999
Q ss_pred CCCCCC--ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC-CC-eE
Q 012799 179 PQTGKP--SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DG-VI 254 (456)
Q Consensus 179 ~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l 254 (456)
+..... ....+..|...|.++.|. ++.+++++.||.|++|| .++....+..|...+.++++.+ ++ .+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l 158 (313)
T 3odt_A 88 LFATSGEDPLYTLIGHQGNVCSLSFQ-------DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKF 158 (313)
T ss_dssp TTCCTTSCC-CEECCCSSCEEEEEEE-------TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred eeecCCCCcccchhhcccCEEEEEec-------CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEE
Confidence 876542 223567899999999994 46999999999999999 7788888889999999999988 55 99
Q ss_pred EEEeCCCcEEEEECCCCeEEEEeec-CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEE
Q 012799 255 YTGSQDCTIKVWETTQGKLIRELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333 (456)
Q Consensus 255 ~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 333 (456)
++++.||.|++|| .++....+.. +...+.+++++|+ +. ++
T Consensus 159 ~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~------------------------------------~~-~~ 199 (313)
T 3odt_A 159 LTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDD------------------------------------GH-FI 199 (313)
T ss_dssp EEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEET------------------------------------TE-EE
T ss_pred EEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCC------------------------------------Ce-EE
Confidence 9999999999999 4567777776 8899999999987 33 89
Q ss_pred EEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeee
Q 012799 334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELI 413 (456)
Q Consensus 334 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 413 (456)
+++.||.|++||++.. .....+.+|...|++++|+|++ .|++++.||.|++||+.+++.+..+..|..+|.++
T Consensus 200 ~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~----- 272 (313)
T 3odt_A 200 SCSNDGLIKLVDMHTG-DVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSV----- 272 (313)
T ss_dssp EEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEE-----
T ss_pred EccCCCeEEEEECCch-hhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEE-----
Confidence 9999999999998765 4566678899999999999999 58899999999999999999999999999999999
Q ss_pred eeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 414 YCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+|+|+++ +++++.||.|++|
T Consensus 273 ----------------------~~~~~~~-~~~~~~dg~i~iw 292 (313)
T 3odt_A 273 ----------------------DCMSNGD-IIVGSSDNLVRIF 292 (313)
T ss_dssp ----------------------EECTTSC-EEEEETTSCEEEE
T ss_pred ----------------------EEccCCC-EEEEeCCCcEEEE
Confidence 8999998 6679999999998
No 30
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7.5e-42 Score=314.88 Aligned_cols=282 Identities=17% Similarity=0.224 Sum_probs=239.4
Q ss_pred cccccCCcccEEEEEECCCC-CeEEEEECCCcEEEEeCCCCcceeEEe--cCCCCEEEEEEcC-CCCEEEEEeCCCeEEE
Q 012799 101 SATIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSA-DGKHLVSGSKAGELQC 176 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~s~~~dg~i~v 176 (456)
.+.+.+|.+.|++++|+|++ ++||+|+.||.|++||+.+++....+. +|...|.+++|+| ++++|++++.|+.|++
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 145 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL 145 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence 45678999999999999999 999999999999999999888777765 6999999999999 7899999999999999
Q ss_pred EeCCCCCCcc-ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--e
Q 012799 177 WDPQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--V 253 (456)
Q Consensus 177 wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~ 253 (456)
||+++..... .....|...|.+++|+| ++.++++++.||.|++||+ +++.+..+.+|...|.+++|+|++ .
T Consensus 146 wd~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 146 RDFSGSVIQVFAKTDSWDYWYCCVDVSV-----SRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWL 219 (383)
T ss_dssp EETTSCEEEEEECCCCSSCCEEEEEEET-----TTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred EECCCCceEEEeccCCCCCCeEEEEECC-----CCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCE
Confidence 9998643221 01233457899999999 8999999999999999999 577888899999999999999988 7
Q ss_pred EEEEeCCCcEEEEECCC----CeEEEEeecCCcceEEEEecC-cceeeeccccCCCCccCChHHHHHHHHhhhhhccCCC
Q 012799 254 IYTGSQDCTIKVWETTQ----GKLIRELKGHGHWVNSLALST-EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (456)
Q Consensus 254 l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (456)
+++++.|+.|++||+++ +..+..+ .|...+.+++|+| +
T Consensus 220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~------------------------------------ 262 (383)
T 3ei3_B 220 MATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTD------------------------------------ 262 (383)
T ss_dssp EEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTT------------------------------------
T ss_pred EEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCC------------------------------------
Confidence 99999999999999998 6667666 5899999999999 7
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCccccccc-------c----------ccEeEEEECCCCCEEEEEECCCcEEEEeCCC
Q 012799 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-------Q----------QLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391 (456)
Q Consensus 329 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~----------~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 391 (456)
+.++++++.|+.|++||++...... .+.+| . ..+..++|+|++++ +|+.||.|++||+.+
T Consensus 263 ~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~ 339 (383)
T 3ei3_B 263 STKLLTTDQRNEIRVYSSYDWSKPD-QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANS 339 (383)
T ss_dssp SCEEEEEESSSEEEEEETTBTTSCS-EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTT
T ss_pred CCEEEEEcCCCcEEEEECCCCcccc-ccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCC
Confidence 5679999999999999987665432 22222 2 23445667777766 778999999999999
Q ss_pred CeEEEEEec--ccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 392 GKFVAVFRG--HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 392 ~~~~~~~~~--~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
++.+..+.+ |...+..+ +|+|+|++|++|+ ||.|+||
T Consensus 340 ~~~~~~l~~~~~~~~~~~~---------------------------~~s~~g~~l~s~s-d~~i~iw 378 (383)
T 3ei3_B 340 GGLVHQLRDPNAAGIISLN---------------------------KFSPTGDVLASGM-GFNILIW 378 (383)
T ss_dssp CCEEEEECBTTBCSCCCEE---------------------------EECTTSSEEEEEE-TTEEEEE
T ss_pred CceeeeecCCCCCceEEEE---------------------------EEecCccEEEEec-CCcEEEE
Confidence 999999987 45677777 8999999999997 9999999
No 31
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-42 Score=320.25 Aligned_cols=290 Identities=22% Similarity=0.343 Sum_probs=250.8
Q ss_pred eecccccccccC--CcccEEEEEECCCCC-eEEEEECCCcEEEEeC----CCCc------ceeEEec----------CCC
Q 012799 95 RPVNRCSATIAG--HTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL----NTQT------PMFKCTG----------HKN 151 (456)
Q Consensus 95 ~~~~~~~~~l~~--h~~~V~~~~~s~~~~-~l~~~~~d~~v~vwd~----~~~~------~~~~~~~----------~~~ 151 (456)
+......+.+.. |.+.|++++|+|+++ +||+|+.||.|++|++ .+++ ....+.. |..
T Consensus 30 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (425)
T 1r5m_A 30 DDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTN 109 (425)
T ss_dssp ----CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CB
T ss_pred ccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCC
Confidence 333344444544 559999999999999 9999999999999999 8877 4555544 677
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe
Q 012799 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK 231 (456)
Q Consensus 152 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 231 (456)
.|++++|+|++++|++++.||.|++|| .+++... .+..|...|.+++|+| ++++|++++.||.|++||+.+++
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~-~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLN-VLNFHRAPIVSVKWNK-----DGTHIISMDVENVTILWNVISGT 182 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEE-EECCCCSCEEEEEECT-----TSSEEEEEETTCCEEEEETTTTE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee-eccCCCccEEEEEECC-----CCCEEEEEecCCeEEEEECCCCc
Confidence 999999999999999999999999999 4454443 5778999999999999 88999999999999999999999
Q ss_pred EEEEecCcCcc---------------EEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceee
Q 012799 232 CVICLSGHTLA---------------VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR 296 (456)
Q Consensus 232 ~~~~~~~~~~~---------------v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 296 (456)
.+..+..+... +.+++|++++.+++++.+|.|++||+++++.+..+..|...+.+++|+|+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~---- 258 (425)
T 1r5m_A 183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT---- 258 (425)
T ss_dssp EEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT----
T ss_pred EEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC----
Confidence 99988877776 99999999999999999999999999999999899899999999999998
Q ss_pred eccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEE
Q 012799 297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA 376 (456)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 376 (456)
+.++++++.|+.|++||+.... ....+.+|...|.+++|+|++ +|+
T Consensus 259 --------------------------------~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~-~l~ 304 (425)
T 1r5m_A 259 --------------------------------NKLLLSASDDGTLRIWHGGNGN-SQNCFYGHSQSIVSASWVGDD-KVI 304 (425)
T ss_dssp --------------------------------TTEEEEEETTSCEEEECSSSBS-CSEEECCCSSCEEEEEEETTT-EEE
T ss_pred --------------------------------CCEEEEEcCCCEEEEEECCCCc-cceEecCCCccEEEEEECCCC-EEE
Confidence 5679999999999999977654 455567899999999999999 999
Q ss_pred EEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 377 SASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 377 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+++.||.|++||+.+++.+..+..|..+|.++ +|+|++++|++++.||.|+||
T Consensus 305 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~---------------------------~~s~~~~~l~~~~~dg~i~i~ 357 (425)
T 1r5m_A 305 SCSMDGSVRLWSLKQNTLLALSIVDGVPIFAG---------------------------RISQDGQKYAVAFMDGQVNVY 357 (425)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECTTCCEEEE---------------------------EECTTSSEEEEEETTSCEEEE
T ss_pred EEeCCCcEEEEECCCCcEeEecccCCccEEEE---------------------------EEcCCCCEEEEEECCCeEEEE
Confidence 99999999999999999999999999999999 899999999999999999998
No 32
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.9e-42 Score=314.85 Aligned_cols=283 Identities=17% Similarity=0.237 Sum_probs=246.2
Q ss_pred ccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc--ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 012799 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (456)
Q Consensus 104 l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 181 (456)
+..|.++|++++|+|++++||+|+.|+.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||+++
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 34699999999999999999999999999999999887 8888999999999999999999999999999999999988
Q ss_pred CCCccc-cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe----EEEEecCcCccEEEEEeCCCC-eEE
Q 012799 182 GKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK----CVICLSGHTLAVTCVKWGGDG-VIY 255 (456)
Q Consensus 182 ~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~l~ 255 (456)
++.... ....|...|.+++|+| +++++++++.||.|++||++.++ .......|...|.+++|+|++ .++
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAP-----NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECT-----TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred CeeeeeEEeecCCCceeEEEECC-----CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 763321 3467889999999999 88999999999999999998776 233346789999999999998 899
Q ss_pred EEeCCCcEEEEEC------------------CCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHH
Q 012799 256 TGSQDCTIKVWET------------------TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA 317 (456)
Q Consensus 256 ~~~~dg~i~iwd~------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (456)
+++.||.|++||+ ..++.+..+..|...+.+++|+|+
T Consensus 159 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------------------- 213 (372)
T 1k8k_C 159 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN------------------------- 213 (372)
T ss_dssp EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS-------------------------
T ss_pred EEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCC-------------------------
Confidence 9999999999995 467888999899999999999998
Q ss_pred HhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCC--CeE-
Q 012799 318 LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT--GKF- 394 (456)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~--~~~- 394 (456)
+.++++++.|+.|++||++... ....+..|...|.+++|+|++++|++| .||.|++|++.+ ++.
T Consensus 214 -----------~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~ 280 (372)
T 1k8k_C 214 -----------GSRVAWVSHDSTVCLADADKKM-AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLS 280 (372)
T ss_dssp -----------SSEEEEEETTTEEEEEEGGGTT-EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEE
T ss_pred -----------CCEEEEEeCCCEEEEEECCCCc-eeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEE
Confidence 5679999999999999987654 556677899999999999999988887 899999999987 531
Q ss_pred -E------------------------------------EEE-ecccccEEEEEeeeeeeecCCCCceeeeccccccccee
Q 012799 395 -V------------------------------------AVF-RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS 436 (456)
Q Consensus 395 -~------------------------------------~~~-~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (456)
+ ..+ .+|..+|+++ +
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~---------------------------~ 333 (372)
T 1k8k_C 281 FGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQI---------------------------S 333 (372)
T ss_dssp ECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEE---------------------------E
T ss_pred EeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCccee---------------------------E
Confidence 1 222 3777788887 7
Q ss_pred Ee-cCC---CeEEEeeCCCceEEC
Q 012799 437 WS-ADS---RLLLSGSKDSTLKVT 456 (456)
Q Consensus 437 ~s-~dg---~~l~s~s~Dg~v~iW 456 (456)
|. ++| ++|++|+.||.|+||
T Consensus 334 ~~~~~g~~~~~l~s~~~Dg~i~~W 357 (372)
T 1k8k_C 334 VLSGGKAKCSQFCTTGMDGGMSIW 357 (372)
T ss_dssp EEESTTTSCSEEEEEETTSEEEEE
T ss_pred EecCCCcceeeEEEecCCCceEEE
Confidence 55 676 999999999999999
No 33
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.3e-41 Score=306.63 Aligned_cols=245 Identities=20% Similarity=0.291 Sum_probs=211.4
Q ss_pred CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeE----EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 012799 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK----CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (456)
Q Consensus 106 ~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 181 (456)
.|...|.+++|+|++ .|++|+.||+|+|||+.+++.+.. ..+|...|++++|+|++++|++|+.|++|++||+++
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 466789999999985 688999999999999998876544 348999999999999999999999999999999999
Q ss_pred CCCccccccCcccceEEEEecccccCCCC-CEEEEEeCCCcEEEEECCCCeEEEEec--CcCccEEEEEeCCCC--eEEE
Q 012799 182 GKPSGNPLSGHKKWITGISWEPVHLNAPC-RRFVSASKDGDARIWDVSLRKCVICLS--GHTLAVTCVKWGGDG--VIYT 256 (456)
Q Consensus 182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~--~l~~ 256 (456)
++.+. .+.+|...|.+++|+| ++ ..|++++.|+.|++||++++++...+. .+...+.+++|+|++ ++++
T Consensus 159 ~~~~~-~~~~h~~~V~~~~~~~-----~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s 232 (344)
T 4gqb_B 159 QVVLS-SYRAHAAQVTCVAASP-----HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVF 232 (344)
T ss_dssp TEEEE-EECCCSSCEEEEEECS-----SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEE
T ss_pred CcEEE-EEcCcCCceEEEEecC-----CCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEE
Confidence 88765 6788999999999998 55 578999999999999999999888774 456679999999965 7889
Q ss_pred EeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe
Q 012799 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (456)
Q Consensus 257 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 336 (456)
|+.||.|++||+++++++..+.+|...|++++|+|++ ..+|++|+
T Consensus 233 g~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g-----------------------------------~~~lasgs 277 (344)
T 4gqb_B 233 GDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHS-----------------------------------VPFLASLS 277 (344)
T ss_dssp EETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSS-----------------------------------SCCEEEEE
T ss_pred eccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCC-----------------------------------CeEEEEEe
Confidence 9999999999999999999999999999999999983 34589999
Q ss_pred CCCcEEEEecCCCCCCccccccccccEeEEEECCCCC-EEEEEECCCcEEEEeCCCCeE
Q 012799 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTTGKF 394 (456)
Q Consensus 337 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~~~~ 394 (456)
.|++|++||+..++ ...+.+|.+.|++++|+|+++ +|++|+.||+|++|++.+...
T Consensus 278 ~D~~i~vwd~~~~~--~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 278 EDCSLAVLDSSLSE--LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp TTSCEEEECTTCCE--EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred CCCeEEEEECCCCc--EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 99999999976653 345689999999999999886 578999999999999987543
No 34
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-42 Score=323.95 Aligned_cols=310 Identities=18% Similarity=0.272 Sum_probs=247.3
Q ss_pred cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC----CcceeEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeC
Q 012799 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT----QTPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDP 179 (456)
Q Consensus 105 ~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~ 179 (456)
..|...|++++|+|++++|++|+.||.|++||+.+ .+.+..+.+|...|.+++|+|+ +++|++++.||.|++||+
T Consensus 64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143 (416)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence 36899999999999999999999999999999987 4577888899999999999998 899999999999999999
Q ss_pred CCCC------Ccc--ccccCcccceEEEEecccccCCC-CCEEEEEeCCCcEEEEECCCCeEEEEecCc------CccEE
Q 012799 180 QTGK------PSG--NPLSGHKKWITGISWEPVHLNAP-CRRFVSASKDGDARIWDVSLRKCVICLSGH------TLAVT 244 (456)
Q Consensus 180 ~~~~------~~~--~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~ 244 (456)
.+++ ... .....|...|.+++|+| + +.++++++.||.|++||+++++.+..+..+ ...|.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 218 (416)
T 2pm9_A 144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQ-----SLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLS 218 (416)
T ss_dssp TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECS-----SCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEE
T ss_pred CCCccccccccccccccccCCCCCeeEEEeCC-----CCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceE
Confidence 9876 222 12467889999999999 6 689999999999999999999999888776 78999
Q ss_pred EEEeCCCC--eEEEEeCCC---cEEEEECCCC-eEEEEee-cCCcceEEEEecC-cceeeeccccCCCCccCChHHHHHH
Q 012799 245 CVKWGGDG--VIYTGSQDC---TIKVWETTQG-KLIRELK-GHGHWVNSLALST-EYALRTGAFDHTGKQYSSPEEMKKA 316 (456)
Q Consensus 245 ~~~~~~~~--~l~~~~~dg---~i~iwd~~~~-~~~~~~~-~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (456)
+++|+|++ .+++++.|+ .|++||++++ +.+..+. .|...|.+++|+| +
T Consensus 219 ~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~------------------------ 274 (416)
T 2pm9_A 219 VVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQD------------------------ 274 (416)
T ss_dssp EEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSC------------------------
T ss_pred EEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCC------------------------
Confidence 99999986 889999998 9999999986 6677777 8999999999998 5
Q ss_pred HHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCC-CEEEEEECCCcEEEEeCCCCeEE
Q 012799 317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFV 395 (456)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~ 395 (456)
+.++++++.|+.|++||+... .....+.+|...|.+++|+|++ .+|++++.||.|++||+.++...
T Consensus 275 ------------~~~l~s~~~dg~v~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 275 ------------EHLLLSSGRDNTVLLWNPESA-EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp ------------SSCEEEEESSSEEEEECSSSC-CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred ------------CCeEEEEeCCCCEEEeeCCCC-ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence 566999999999999997765 4566678899999999999998 89999999999999999886643
Q ss_pred EEEec--ccccEEEE-Eeeeee----eecCCCCc-eeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 396 AVFRG--HVGPVYQI-RFELIY----CFRYPSNF-YCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 396 ~~~~~--~~~~v~~i-~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
..... ........ .|.... ........ ....-....+..++|+|||++|++++.||+|+||
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w 410 (416)
T 2pm9_A 342 LDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSIT 410 (416)
T ss_dssp SCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCB
T ss_pred cccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEE
Confidence 22211 00000000 000000 00000000 0000022334566999999999999999999999
No 35
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.8e-42 Score=314.78 Aligned_cols=284 Identities=19% Similarity=0.290 Sum_probs=243.4
Q ss_pred cccCCcccEEEEEECCC----CCeEEEEECCCcEEEEeCCCCcceeEEec-----CCCCEEEEEEcCC----CCEEEEEe
Q 012799 103 TIAGHTEAVLSVAFSPD----GRQLASGSGDTTVRLWDLNTQTPMFKCTG-----HKNWVLCIAWSAD----GKHLVSGS 169 (456)
Q Consensus 103 ~l~~h~~~V~~~~~s~~----~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~----~~~l~s~~ 169 (456)
...+|.++|++++|+|+ ...+++++.++.|++||+.+++.+..+.. |...|.+++|+|+ +++|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 34589999999999984 44566666677999999998887766654 5578999999998 67999999
Q ss_pred CCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe---cCcCccEEEE
Q 012799 170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SGHTLAVTCV 246 (456)
Q Consensus 170 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~ 246 (456)
.||.|++||+.+++... .+.+|...|.+++|+|. ++.+|++++.||.|++||+++++.+..+ ..|...|.++
T Consensus 93 ~dg~i~v~d~~~~~~~~-~~~~~~~~i~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 167 (366)
T 3k26_A 93 SRGIIRIINPITMQCIK-HYVGHGNAINELKFHPR----DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 167 (366)
T ss_dssp TTCEEEEECTTTCCEEE-EEESCCSCEEEEEECSS----CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEE
T ss_pred CCCEEEEEEchhceEee-eecCCCCcEEEEEECCC----CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEE
Confidence 99999999999988765 56789999999999983 5689999999999999999999999888 6899999999
Q ss_pred EeCCCC-eEEEEeCCCcEEEEECCCCeEEEEee----------------------------cCCcceEEEEecCcceeee
Q 012799 247 KWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK----------------------------GHGHWVNSLALSTEYALRT 297 (456)
Q Consensus 247 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~----------------------------~~~~~i~~~~~~~~~~~~~ 297 (456)
+|+|++ .+++++.||.|++||+++++....+. .|...|.+++|+.
T Consensus 168 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------ 241 (366)
T 3k26_A 168 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLG------ 241 (366)
T ss_dssp EECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEET------
T ss_pred EECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcC------
Confidence 999998 99999999999999999876543333 2777788888762
Q ss_pred ccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC-------------CccccccccccEe
Q 012799 298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-------------PKTRMTGHQQLVN 364 (456)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------------~~~~~~~~~~~v~ 364 (456)
+++++++.|+.|++||+..... ....+..|...|+
T Consensus 242 --------------------------------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 289 (366)
T 3k26_A 242 --------------------------------DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIW 289 (366)
T ss_dssp --------------------------------TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSS
T ss_pred --------------------------------CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEE
Confidence 3599999999999999876543 2344567888899
Q ss_pred EEEECCC--CCEEEEEECCCcEEEEeCCCCe----EEEEEecc--cccEEEEEeeeeeeecCCCCceeeeccccccccee
Q 012799 365 HVYFSPD--GQWVASASFDKSIKLWNGTTGK----FVAVFRGH--VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS 436 (456)
Q Consensus 365 ~~~~sp~--~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~--~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (456)
+++|+|+ +++|++|+.||.|++||+.+++ ....+.+| ...|+++ +
T Consensus 290 ~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~---------------------------~ 342 (366)
T 3k26_A 290 YMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQT---------------------------S 342 (366)
T ss_dssp CCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEE---------------------------E
T ss_pred EEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEE---------------------------E
Confidence 9999999 9999999999999999999875 44577777 7899999 9
Q ss_pred EecCCCeEEEeeCCCceEEC
Q 012799 437 WSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 437 ~s~dg~~l~s~s~Dg~v~iW 456 (456)
|+|++++|++|+.||.|+||
T Consensus 343 ~s~~~~~l~s~~~dg~i~iw 362 (366)
T 3k26_A 343 FSRDSSILIAVCDDASIWRW 362 (366)
T ss_dssp ECTTSSEEEEEETTSEEEEE
T ss_pred eCCCCCeEEEEeCCCEEEEE
Confidence 99999999999999999999
No 36
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-42 Score=323.45 Aligned_cols=282 Identities=17% Similarity=0.327 Sum_probs=249.6
Q ss_pred CcccEEEEEECCCCC-eEEEE----------ECCCcEEEEeCCCCc---ceeEEecCCCCEEEEEEcCCCCEEEEEeCCC
Q 012799 107 HTEAVLSVAFSPDGR-QLASG----------SGDTTVRLWDLNTQT---PMFKCTGHKNWVLCIAWSADGKHLVSGSKAG 172 (456)
Q Consensus 107 h~~~V~~~~~s~~~~-~l~~~----------~~d~~v~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 172 (456)
+...|.+++|+|+++ +||+| +.|+.|++||+.++. .+..+ .|...|.+++|+|++++|++++.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence 345788999999987 99999 889999999998875 33333 5899999999999999999999999
Q ss_pred eEEEEeCCC---CCCccccccCcccceEEEEecccccCCC-CCEEEEEeCCCcEEEEECCCCe------EEEE---ecCc
Q 012799 173 ELQCWDPQT---GKPSGNPLSGHKKWITGISWEPVHLNAP-CRRFVSASKDGDARIWDVSLRK------CVIC---LSGH 239 (456)
Q Consensus 173 ~i~vwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~------~~~~---~~~~ 239 (456)
.|++||+.+ +......+.+|...|.+++|+| + +.++++++.||.|++||+.+++ .... ...|
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 164 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNA-----KQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS 164 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECS-----SSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcC-----CCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCC
Confidence 999999987 2323336778999999999999 6 7899999999999999998876 3322 3678
Q ss_pred CccEEEEEeCCC-C-eEEEEeCCCcEEEEECCCCeEEEEeecC------CcceEEEEecCcceeeeccccCCCCccCChH
Q 012799 240 TLAVTCVKWGGD-G-VIYTGSQDCTIKVWETTQGKLIRELKGH------GHWVNSLALSTEYALRTGAFDHTGKQYSSPE 311 (456)
Q Consensus 240 ~~~v~~~~~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (456)
...|.+++|+|+ + .+++++.||.|++||+++++.+..+..+ ...+.+++|+|++
T Consensus 165 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------------ 226 (416)
T 2pm9_A 165 VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN------------------ 226 (416)
T ss_dssp SCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC------------------
T ss_pred CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC------------------
Confidence 899999999998 4 8999999999999999999999988876 7889999999983
Q ss_pred HHHHHHHhhhhhccCCCCCEEEEEeCCC---cEEEEecCCCCCCccccc-cccccEeEEEECC-CCCEEEEEECCCcEEE
Q 012799 312 EMKKAALERYNKIKGNAPERLVSGSDDF---TMFLWEPAVSKQPKTRMT-GHQQLVNHVYFSP-DGQWVASASFDKSIKL 386 (456)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~s~~~dg~i~i 386 (456)
..++++++.|+ .|++||++....+...+. +|...|.+++|+| ++++|++++.||.|++
T Consensus 227 -----------------~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~ 289 (416)
T 2pm9_A 227 -----------------STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLL 289 (416)
T ss_dssp -----------------TTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEE
T ss_pred -----------------CCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEE
Confidence 35699999998 999999988766777777 8999999999999 9999999999999999
Q ss_pred EeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCC-CeEEEeeCCCceEEC
Q 012799 387 WNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLKVT 456 (456)
Q Consensus 387 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~s~s~Dg~v~iW 456 (456)
||+.+++.+..+.+|...|.++ +|+|++ ++|++++.||.|+||
T Consensus 290 wd~~~~~~~~~~~~~~~~v~~~---------------------------~~s~~~~~~l~s~~~d~~i~iw 333 (416)
T 2pm9_A 290 WNPESAEQLSQFPARGNWCFKT---------------------------KFAPEAPDLFACASFDNKIEVQ 333 (416)
T ss_dssp ECSSSCCEEEEEECSSSCCCCE---------------------------EECTTCTTEEEECCSSSEEEEE
T ss_pred eeCCCCccceeecCCCCceEEE---------------------------EECCCCCCEEEEEecCCcEEEE
Confidence 9999999999999999999999 999999 899999999999998
No 37
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-41 Score=316.17 Aligned_cols=278 Identities=18% Similarity=0.306 Sum_probs=250.0
Q ss_pred CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCc
Q 012799 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185 (456)
Q Consensus 106 ~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 185 (456)
+|.+.|++++|+|++++|++|+.||.|++|| .+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.+++..
T Consensus 106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM 184 (425)
T ss_dssp --CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence 3788999999999999999999999999999 667888889999999999999999999999999999999999988765
Q ss_pred cccccCcccc---------------eEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC
Q 012799 186 GNPLSGHKKW---------------ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG 250 (456)
Q Consensus 186 ~~~~~~~~~~---------------v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 250 (456)
. .+..+... +.++.|+| + ..+++++.+|.|++||+++++.+..+..|...|.+++|+|
T Consensus 185 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 257 (425)
T 1r5m_A 185 Q-HFELKETGGSSINAENHSGDGSLGVDVEWVD-----D-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND 257 (425)
T ss_dssp E-EECCC---------------CCCBSCCEEEE-----T-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET
T ss_pred E-EeeccccCccceeeccccCCcceeeEEEEcC-----C-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC
Confidence 4 34444444 88888887 4 4689999999999999999999889999999999999999
Q ss_pred CC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCC
Q 012799 251 DG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (456)
Q Consensus 251 ~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (456)
++ .+++++.||.|++||+++++.+..+..|...+.+++|+|+ +
T Consensus 258 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~------------------------------------~ 301 (425)
T 1r5m_A 258 TNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGD------------------------------------D 301 (425)
T ss_dssp TTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETT------------------------------------T
T ss_pred CCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCC------------------------------------C
Confidence 98 9999999999999999999999999889999999999997 3
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCe----------------
Q 012799 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK---------------- 393 (456)
Q Consensus 330 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~---------------- 393 (456)
.+++++.|+.|++||+.... ....+..|...|.+++|+|++++|++++.||.|++||+.+++
T Consensus 302 -~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 379 (425)
T 1r5m_A 302 -KVISCSMDGSVRLWSLKQNT-LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNP 379 (425)
T ss_dssp -EEEEEETTSEEEEEETTTTE-EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------C
T ss_pred -EEEEEeCCCcEEEEECCCCc-EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCc
Confidence 59999999999999976644 555677889999999999999999999999999999999888
Q ss_pred ----EEEEEecccc--cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 394 ----FVAVFRGHVG--PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 394 ----~~~~~~~~~~--~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.+..+.+|.. .|.++ +|+|++++|++++.||.|++|
T Consensus 380 ~~~~~~~~~~~~~~~~~v~~~---------------------------~~s~~~~~l~~~~~dg~i~iw 421 (425)
T 1r5m_A 380 LPIPLYASYQSSQDNDYIFDL---------------------------SWNCAGNKISVAYSLQEGSVV 421 (425)
T ss_dssp EECCEEEEECCTTCCCCEEEE---------------------------EECTTSSEEEEEESSSCCEEE
T ss_pred ccchhhhhhcCcccCCceEEE---------------------------EccCCCceEEEEecCceEEEE
Confidence 8888988876 89999 999999999999999999998
No 38
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.1e-40 Score=299.66 Aligned_cols=269 Identities=24% Similarity=0.440 Sum_probs=237.2
Q ss_pred cCcccEEEEEEeccc----------eEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc--
Q 012799 76 VSVEKVLSIVYQPQA----------VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-- 141 (456)
Q Consensus 76 ~~~~~~~~~~~~~~~----------~~~~~~~--~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~-- 141 (456)
.+...+..+.|.|+. .+++|.. ......+..|...|.+++|+|++++|++|+.|+.|++|++.+..
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~ 132 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN 132 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc
Confidence 366778888888754 4456643 45667888999999999999999999999999999999998753
Q ss_pred --ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC
Q 012799 142 --PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD 219 (456)
Q Consensus 142 --~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d 219 (456)
....+.+|...|.++.|++++. +++++.|+.|++||+++++... .+.+|...|.+++|+| ++.++++|+.|
T Consensus 133 ~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~-~~~~h~~~v~~~~~~~-----~~~~l~sg~~d 205 (340)
T 1got_B 133 VRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTT-TFTGHTGDVMSLSLAP-----DTRLFVSGACD 205 (340)
T ss_dssp CEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECT-----TSSEEEEEETT
T ss_pred ceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEE-EEcCCCCceEEEEECC-----CCCEEEEEeCC
Confidence 4456789999999999998775 8999999999999999987765 5778999999999999 88999999999
Q ss_pred CcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecC--CcceEEEEecCcceee
Q 012799 220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGH--GHWVNSLALSTEYALR 296 (456)
Q Consensus 220 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~ 296 (456)
+.|++||++++++...+.+|...|.+++|+|++ .|++|+.||.|++||+++++.+..+..+ ...|.+++|+|+
T Consensus 206 ~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~---- 281 (340)
T 1got_B 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS---- 281 (340)
T ss_dssp SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT----
T ss_pred CcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCC----
Confidence 999999999999999999999999999999999 9999999999999999999888776532 347999999998
Q ss_pred eccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEE
Q 012799 297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA 376 (456)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 376 (456)
+.++++|+.|+.|++||+... .....+.+|...|.+++|+|+|++|+
T Consensus 282 --------------------------------g~~l~~g~~d~~i~vwd~~~~-~~~~~~~~h~~~v~~~~~s~dg~~l~ 328 (340)
T 1got_B 282 --------------------------------GRLLLAGYDDFNCNVWDALKA-DRAGVLAGHDNRVSCLGVTDDGMAVA 328 (340)
T ss_dssp --------------------------------SSEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred --------------------------------CCEEEEECCCCeEEEEEcccC-cEeeEeecCCCcEEEEEEcCCCCEEE
Confidence 667999999999999997654 45566789999999999999999999
Q ss_pred EEECCCcEEEEe
Q 012799 377 SASFDKSIKLWN 388 (456)
Q Consensus 377 s~~~dg~i~iwd 388 (456)
+|+.||.|++||
T Consensus 329 s~s~D~~i~iWd 340 (340)
T 1got_B 329 TGSWDSFLKIWN 340 (340)
T ss_dssp EEETTSCEEEEC
T ss_pred EEcCCccEEecC
Confidence 999999999997
No 39
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-42 Score=319.59 Aligned_cols=243 Identities=15% Similarity=0.250 Sum_probs=204.5
Q ss_pred cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCC--cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 012799 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ--TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (456)
Q Consensus 105 ~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 182 (456)
+.|.++|++++|+|++++||+|+.|+.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.++
T Consensus 8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~ 87 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD 87 (377)
T ss_dssp EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence 346789999999999999999999999999999988 778888999999999999999999999999999999999987
Q ss_pred C--CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe---EEEEecC-cCccEEEEEeCCCC-eEE
Q 012799 183 K--PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVICLSG-HTLAVTCVKWGGDG-VIY 255 (456)
Q Consensus 183 ~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~-~~~~v~~~~~~~~~-~l~ 255 (456)
+ .....+..|...|.+++|+| ++++|++++.|+.|++||+++++ ....+.. |...|.+++|+|++ .|+
T Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 162 (377)
T 3dwl_C 88 GTWKQTLVLLRLNRAATFVRWSP-----NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLA 162 (377)
T ss_dssp -CCCCEEECCCCSSCEEEEECCT-----TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEE
T ss_pred CceeeeeEecccCCceEEEEECC-----CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEE
Confidence 7 11224677999999999999 88999999999999999999887 3667777 99999999999998 999
Q ss_pred EEeCCCcEEEEECC------------------CCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHH
Q 012799 256 TGSQDCTIKVWETT------------------QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA 317 (456)
Q Consensus 256 ~~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (456)
+++.||.|++||++ .++.+..+ .|...|.+++|+|+
T Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~------------------------- 216 (377)
T 3dwl_C 163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPS------------------------- 216 (377)
T ss_dssp EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTT-------------------------
T ss_pred EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCC-------------------------
Confidence 99999999999985 35566677 89999999999998
Q ss_pred HhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC---ccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799 318 LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP---KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (456)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 390 (456)
+.++++++.|+.|++||+.....+ ...+.+|...|.+++|+|++++|++|+.++.+ +|+..
T Consensus 217 -----------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 217 -----------GNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp -----------SSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred -----------CCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 556999999999999998876652 56678899999999999999999999866655 66654
No 40
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.6e-40 Score=293.08 Aligned_cols=253 Identities=22% Similarity=0.345 Sum_probs=218.0
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 179 (456)
+.+++.+|...|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||+
T Consensus 57 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~ 136 (319)
T 3frx_A 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136 (319)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred cceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCcccceEEEEeccccc-CCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE
Q 012799 180 QTGKPSGNPLSGHKKWITGISWEPVHL-NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG 257 (456)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~ 257 (456)
+... .. .+.+|...|.++.|.|... ..++..+++++.|+.|++||+++.+....+.+|...|.+++|+|++ +|+++
T Consensus 137 ~~~~-~~-~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~ 214 (319)
T 3frx_A 137 KGQC-LA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214 (319)
T ss_dssp TSCE-EE-EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEE
T ss_pred CCCe-EE-EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEE
Confidence 7443 32 5678999999999998432 1245589999999999999999999999999999999999999999 99999
Q ss_pred eCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC
Q 012799 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (456)
Q Consensus 258 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (456)
+.||.|++||+++++.+..+.. ...+.+++|+|+ +.++++++.
T Consensus 215 ~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~------------------------------------~~~la~~~~ 257 (319)
T 3frx_A 215 GKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPN------------------------------------RYWLAAATA 257 (319)
T ss_dssp ETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSS------------------------------------SSEEEEEET
T ss_pred eCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCC------------------------------------CCEEEEEcC
Confidence 9999999999999999988875 467999999998 445776665
Q ss_pred CCcEEEEecCCCCCC-------ccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCC
Q 012799 338 DFTMFLWEPAVSKQP-------KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG 392 (456)
Q Consensus 338 dg~i~iwd~~~~~~~-------~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 392 (456)
..+++|++...... ......|...+.+++|+|+|++|++|+.||.|++||+.++
T Consensus 258 -~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 258 -TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp -TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred -CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 45999997643211 1112345678999999999999999999999999998654
No 41
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.5e-42 Score=319.38 Aligned_cols=298 Identities=17% Similarity=0.197 Sum_probs=249.2
Q ss_pred ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 188 (456)
..+++++|+|++++|++++.|+.|++||+.+++....+..| ..+....|++++++|++|+.||.|++||+.+++... .
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~ 134 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE-I 134 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE-E
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee-e
Confidence 44568999999999999999999999999988777666656 455566789999999999999999999999877654 5
Q ss_pred ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEE
Q 012799 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWE 267 (456)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd 267 (456)
+.+|...|.+++|+| ++++|++++.|+.|++||+++++.+..+.+|...|.+++|+|++ .|++++.||.|++||
T Consensus 135 ~~~h~~~v~~~~~~~-----~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 209 (420)
T 3vl1_A 135 DQAHVSEITKLKFFP-----SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209 (420)
T ss_dssp TTSSSSCEEEEEECT-----TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred cccccCccEEEEECC-----CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeE
Confidence 678999999999999 88999999999999999999999999999999999999999998 899999999999999
Q ss_pred CCCCeEEEEeec---CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEE
Q 012799 268 TTQGKLIRELKG---HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW 344 (456)
Q Consensus 268 ~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 344 (456)
+++++.+..+.. +...+.++++.+............ ......+.+++.++++++.||.|++|
T Consensus 210 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---------------~v~~~~~s~~~~~l~~~~~dg~i~i~ 274 (420)
T 3vl1_A 210 CGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTS---------------KKNNLEFGTYGKYVIAGHVSGVITVH 274 (420)
T ss_dssp TTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCC---------------CCCTTCSSCTTEEEEEEETTSCEEEE
T ss_pred CCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccC---------------cccceEEcCCCCEEEEEcCCCeEEEE
Confidence 999999988874 566788888876532110000000 00112244568899999999999999
Q ss_pred ecCCCCCCccccccccccEeEEEECCCCC-EEEEEECCCcEEEEeCCCCeE-EEEEec-ccccEEEEEeeeeeeecCCCC
Q 012799 345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTTGKF-VAVFRG-HVGPVYQIRFELIYCFRYPSN 421 (456)
Q Consensus 345 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~-~~~~v~~i~~~~~~~~~~~~~ 421 (456)
|++...........|...|++++|+|+++ +|++|+.||.|++||+++++. +..+.. |..+|.++
T Consensus 275 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~------------- 341 (420)
T 3vl1_A 275 NVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV------------- 341 (420)
T ss_dssp ETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-------------
T ss_pred ECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-------------
Confidence 99887766666667899999999999999 999999999999999998754 677776 66677777
Q ss_pred ceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 422 FYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 422 ~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
. .+++++|++++.||.|++|
T Consensus 342 --------------~-~~~~~~l~s~~~d~~v~iw 361 (420)
T 3vl1_A 342 --------------Y-FAAGALFVSSGFDTSIKLD 361 (420)
T ss_dssp --------------E-EETTEEEEEETTTEEEEEE
T ss_pred --------------E-eCCCCEEEEecCCccEEEE
Confidence 4 4578899999999999999
No 42
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.8e-40 Score=294.17 Aligned_cols=253 Identities=23% Similarity=0.409 Sum_probs=215.0
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC--CcceeEEecCCCCEEEEEEcC--CCCEEEEEeCCCeEEEE
Q 012799 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT--QTPMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCW 177 (456)
Q Consensus 102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~--~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vw 177 (456)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+ .+.+..+.+|.+.|.+++|++ ++++|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 35789999999999999999999999999999999974 367788999999999999986 48999999999999999
Q ss_pred eCCCCCC-ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe--EEEEecCcCccEEEEEeCCC---
Q 012799 178 DPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK--CVICLSGHTLAVTCVKWGGD--- 251 (456)
Q Consensus 178 d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--- 251 (456)
|+++++. ....+..|...|.+++|+|.. .+.+|++++.|+.|++||++++. ....+.+|...|.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~---~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHE---YGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 159 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGG---GCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCC---CCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccc
Confidence 9988752 222456799999999999832 27899999999999999998753 23566789999999999996
Q ss_pred ----------C-eEEEEeCCCcEEEEECCCCe----EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHH
Q 012799 252 ----------G-VIYTGSQDCTIKVWETTQGK----LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316 (456)
Q Consensus 252 ----------~-~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (456)
+ .|++|+.|++|++||+++++ ....+.+|...|.+++|+|+..
T Consensus 160 ~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~---------------------- 217 (297)
T 2pm7_B 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL---------------------- 217 (297)
T ss_dssp ----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS----------------------
T ss_pred ccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC----------------------
Confidence 3 89999999999999998765 5677889999999999999731
Q ss_pred HHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC--cccc--ccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799 317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP--KTRM--TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (456)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~--~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 390 (456)
.+.+|++++.|++|++||+...... ...+ ..|...|.+++|+|+|++|++++.||.|++|+..
T Consensus 218 -----------~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 218 -----------LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp -----------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred -----------CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 1356999999999999998764321 1122 4678899999999999999999999999999976
No 43
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.6e-40 Score=297.29 Aligned_cols=254 Identities=25% Similarity=0.400 Sum_probs=212.9
Q ss_pred ccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc--ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 012799 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (456)
Q Consensus 104 l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 181 (456)
..+|.+.|.+++|+|++++||+|+.|++|++|++.++. .+..+.+|...|.+++|+|++++|++|+.|+.|++||+.+
T Consensus 57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~ 136 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136 (345)
T ss_dssp CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence 47899999999999999999999999999999988763 5678889999999999999999999999999999999987
Q ss_pred CCCc--cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe--EEEEecCcCccEEEEEeCCCC-eEEE
Q 012799 182 GKPS--GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK--CVICLSGHTLAVTCVKWGGDG-VIYT 256 (456)
Q Consensus 182 ~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~l~~ 256 (456)
+... ...+.+|...|.+++|+| ++.+|++++.|+.|++||.+.++ +...+.+|...|.+++|+|++ .|++
T Consensus 137 ~~~~~~~~~~~~h~~~v~~~~~~p-----~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s 211 (345)
T 3fm0_A 137 EDEYECVSVLNSHTQDVKHVVWHP-----SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLAS 211 (345)
T ss_dssp TSCEEEEEEECCCCSCEEEEEECS-----SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CCCeEEEEEecCcCCCeEEEEECC-----CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEE
Confidence 6532 234678999999999999 88999999999999999998875 456788999999999999999 9999
Q ss_pred EeCCCcEEEEECCCC---------------eEEEEeec-CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhh
Q 012799 257 GSQDCTIKVWETTQG---------------KLIRELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320 (456)
Q Consensus 257 ~~~dg~i~iwd~~~~---------------~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (456)
++.||+|++||.... +++..+.+ |...|.+++|+++
T Consensus 212 ~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~---------------------------- 263 (345)
T 3fm0_A 212 CSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL---------------------------- 263 (345)
T ss_dssp EETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTT----------------------------
T ss_pred EeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecC----------------------------
Confidence 999999999996321 23444444 7788999999987
Q ss_pred hhhccCCCCCEEEEEeCCCcEEEEecCCCCCCc--------cccccccccEeEEEECCCC-CEEEEEECCCcEEEEeCCC
Q 012799 321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK--------TRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTT 391 (456)
Q Consensus 321 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~ 391 (456)
+..+++++.|+.|++|+........ ....+|...|++++|+|++ .+||+|+.||.|++|++.+
T Consensus 264 --------~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 264 --------TGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR 335 (345)
T ss_dssp --------TCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred --------CCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence 4569999999999999976543211 1235899999999999987 5999999999999999998
Q ss_pred CeEEEEE
Q 012799 392 GKFVAVF 398 (456)
Q Consensus 392 ~~~~~~~ 398 (456)
++.+..+
T Consensus 336 ~~~~~~~ 342 (345)
T 3fm0_A 336 PEGLHHH 342 (345)
T ss_dssp -------
T ss_pred CCCcccc
Confidence 8766544
No 44
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-40 Score=306.61 Aligned_cols=279 Identities=20% Similarity=0.355 Sum_probs=241.6
Q ss_pred ccCCcccE--EEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEec-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799 104 IAGHTEAV--LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (456)
Q Consensus 104 l~~h~~~V--~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 180 (456)
..+|.+.+ .+++|++ ..+++++.|+.|++||+.+++....+.. |...|.+++|+|++++|++|+.||.|++||+.
T Consensus 87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 44676654 4466654 5688888999999999999988877765 88999999999999999999999999999999
Q ss_pred CCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC-CCeEEEEecCcCccEEEEEeCCCC-eEEEEe
Q 012799 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-LRKCVICLSGHTLAVTCVKWGGDG-VIYTGS 258 (456)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~ 258 (456)
+++... .+.+|...|.+++|.+ ..+++++.||.|++||++ ....+..+.+|...|.+++|+|++ .+++++
T Consensus 165 ~~~~~~-~~~~~~~~v~~~~~~~-------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 236 (401)
T 4aez_A 165 SQTKLR-TMAGHQARVGCLSWNR-------HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG 236 (401)
T ss_dssp TCCEEE-EECCCSSCEEEEEEET-------TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred CCeEEE-EecCCCCceEEEEECC-------CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 887665 5678999999999954 699999999999999998 567788888999999999999998 999999
Q ss_pred CCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe--
Q 012799 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS-- 336 (456)
Q Consensus 259 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-- 336 (456)
.||.|++||+++++.+..+..|...|.+++|+|++ ...+++++
T Consensus 237 ~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~-----------------------------------~~ll~~~~gs 281 (401)
T 4aez_A 237 NDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ-----------------------------------SNLLATGGGT 281 (401)
T ss_dssp TTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTS-----------------------------------TTEEEEECCT
T ss_pred CCCeEEEccCCCCCccEEecCCcceEEEEEECCCC-----------------------------------CCEEEEecCC
Confidence 99999999999999999999999999999999973 34566655
Q ss_pred CCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEE--ECCCcEEEEeCCCCeEEE--EEecccccEEEEEeee
Q 012799 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA--SFDKSIKLWNGTTGKFVA--VFRGHVGPVYQIRFEL 412 (456)
Q Consensus 337 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~--~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~~ 412 (456)
.|+.|++||+..... ...+ .+...|.+++|+|++++|+++ +.||.|++||+.+++... .+.+|...|.++
T Consensus 282 ~d~~i~i~d~~~~~~-~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~---- 355 (401)
T 4aez_A 282 MDKQIHFWNAATGAR-VNTV-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYS---- 355 (401)
T ss_dssp TTCEEEEEETTTCCE-EEEE-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEE----
T ss_pred CCCEEEEEECCCCCE-EEEE-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEE----
Confidence 799999999876543 3333 466789999999999999994 489999999999976554 467899999999
Q ss_pred eeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+|+|+|++|++++.||.|++|
T Consensus 356 -----------------------~~s~dg~~l~s~~~dg~i~iw 376 (401)
T 4aez_A 356 -----------------------ALSPDGRILSTAASDENLKFW 376 (401)
T ss_dssp -----------------------EECTTSSEEEEECTTSEEEEE
T ss_pred -----------------------EECCCCCEEEEEeCCCcEEEE
Confidence 999999999999999999999
No 45
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-40 Score=332.50 Aligned_cols=344 Identities=13% Similarity=0.118 Sum_probs=260.1
Q ss_pred cccEEEEEEeccc----------eEEEeeccccc-ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEE
Q 012799 78 VEKVLSIVYQPQA----------VFRIRPVNRCS-ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC 146 (456)
Q Consensus 78 ~~~~~~~~~~~~~----------~~~~~~~~~~~-~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~ 146 (456)
...+..+.|+|+. .+++|...... .....|..+|.+++|+| |++|++++.|++|++||+.+++.+..+
T Consensus 17 ~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~ 95 (902)
T 2oaj_A 17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTV 95 (902)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEE
T ss_pred CCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEE
Confidence 4567778888754 34455433221 12235889999999999 889999999999999999999988888
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc----------ccccCcccceEEEEecccccCCCCCEEEEE
Q 012799 147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG----------NPLSGHKKWITGISWEPVHLNAPCRRFVSA 216 (456)
Q Consensus 147 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 216 (456)
. |...|++++|+|++++|++|+.||.|++||+++++... ....+|...|.+++|+|. ++..+++|
T Consensus 96 ~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~----~~~~l~~g 170 (902)
T 2oaj_A 96 F-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR----DIGTVLIS 170 (902)
T ss_dssp E-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT----EEEEEEEE
T ss_pred c-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC----CCCEEEEE
Confidence 6 77899999999999999999999999999999876421 235678999999999992 24689999
Q ss_pred eCCCcEEEEECCCCeEEEEecCc------------------CccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEE-
Q 012799 217 SKDGDARIWDVSLRKCVICLSGH------------------TLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRE- 276 (456)
Q Consensus 217 ~~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~- 276 (456)
+.||.| +||+++++++..+..| ...|.+++|+|+| .|++++.||.|++||+++++++..
T Consensus 171 ~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r 249 (902)
T 2oaj_A 171 YEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMAR 249 (902)
T ss_dssp CSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred eCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEE
Confidence 999999 9999999998888765 4779999999999 999999999999999999987653
Q ss_pred -ee---c-------------CCcceEEEEec----Ccc--eeeeccccCC-----CCccC--------------------
Q 012799 277 -LK---G-------------HGHWVNSLALS----TEY--ALRTGAFDHT-----GKQYS-------------------- 308 (456)
Q Consensus 277 -~~---~-------------~~~~i~~~~~~----~~~--~~~~~~~~~~-----~~~~~-------------------- 308 (456)
+. . +...|.+++|+ |+. .+.+++.+.. ...+.
T Consensus 250 ~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~ 329 (902)
T 2oaj_A 250 TVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYA 329 (902)
T ss_dssp CSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHH
T ss_pred eecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhc
Confidence 21 1 24479999995 332 2233322110 00000
Q ss_pred -------------------------ChHHHH-H---------------------H-HHhh-------------------h
Q 012799 309 -------------------------SPEEMK-K---------------------A-ALER-------------------Y 321 (456)
Q Consensus 309 -------------------------~~~~~~-~---------------------~-~~~~-------------------~ 321 (456)
.+.... . . .... +
T Consensus 330 ~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~ 409 (902)
T 2oaj_A 330 NPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMA 409 (902)
T ss_dssp SCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEE
T ss_pred CccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEE
Confidence 000000 0 0 0000 0
Q ss_pred ------------------------------hhccCCCCCEEEEEeCCCcEEEEecCCCCCCc-ccc---------ccccc
Q 012799 322 ------------------------------NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK-TRM---------TGHQQ 361 (456)
Q Consensus 322 ------------------------------~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~---------~~~~~ 361 (456)
...+.++++++++|+.|++|++||+..+.... ..+ .+|..
T Consensus 410 s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~ 489 (902)
T 2oaj_A 410 ASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKEL 489 (902)
T ss_dssp EEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSC
T ss_pred EEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCC
Confidence 00113567899999999999999987663211 011 27889
Q ss_pred cEeEEEECCCCCEEEEEECCCcEEEEeCCCCe---------------------------------------------EEE
Q 012799 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGK---------------------------------------------FVA 396 (456)
Q Consensus 362 ~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~---------------------------------------------~~~ 396 (456)
.|++++|+|||++||+|+.||+|++||+.+++ ++.
T Consensus 490 ~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 569 (902)
T 2oaj_A 490 AVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPST 569 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEE
T ss_pred ceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeE
Confidence 99999999999999999999999999987662 366
Q ss_pred EEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 397 VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 397 ~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.+.+|.+.|+++ +||||| +||+|+.|++|+||
T Consensus 570 ~l~~h~~~V~sv---------------------------afSpdG-~lAsgs~D~tv~lw 601 (902)
T 2oaj_A 570 AVHANKGKTSAI---------------------------NNSNIG-FVGIAYAAGSLMLI 601 (902)
T ss_dssp EECCCSCSEEEE---------------------------EECBTS-EEEEEETTSEEEEE
T ss_pred EEEcCCCcEEEE---------------------------EecCCc-EEEEEeCCCcEEEE
Confidence 778888889888 899999 99999999999998
No 46
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.8e-40 Score=300.86 Aligned_cols=274 Identities=18% Similarity=0.168 Sum_probs=241.6
Q ss_pred ccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc---ceeEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEeC
Q 012799 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT---PMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDP 179 (456)
Q Consensus 104 l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~ 179 (456)
..+|.+.|++++|+|++++|++++.||.|++|++.+++ ....+.+|...|.+++|+|+++ +|++|+.||.|++||+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 45899999999999999999999999999999998876 3455568999999999999999 9999999999999999
Q ss_pred -CCCCCccccccC--cccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC---------CeEEEEecCcCccEEEEE
Q 012799 180 -QTGKPSGNPLSG--HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL---------RKCVICLSGHTLAVTCVK 247 (456)
Q Consensus 180 -~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~ 247 (456)
.+++.. .+.+ |...|.+++|+| +..+++++.|+.|++||+++ ++++..+. |...|.+++
T Consensus 87 ~~~~~~~--~~~~~~~~~~v~~l~~~~------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~ 157 (342)
T 1yfq_A 87 IGSPSFQ--ALTNNEANLGICRICKYG------DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMD 157 (342)
T ss_dssp SSSSSEE--ECBSCCCCSCEEEEEEET------TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEE
T ss_pred ccCCceE--eccccCCCCceEEEEeCC------CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEE
Confidence 877653 4667 999999999987 36999999999999999987 66665555 889999999
Q ss_pred eCCCCeEEEEeCCCcEEEEECCC-Ce--EEEEeecCCcceEEEEecC-cceeeeccccCCCCccCChHHHHHHHHhhhhh
Q 012799 248 WGGDGVIYTGSQDCTIKVWETTQ-GK--LIRELKGHGHWVNSLALST-EYALRTGAFDHTGKQYSSPEEMKKAALERYNK 323 (456)
Q Consensus 248 ~~~~~~l~~~~~dg~i~iwd~~~-~~--~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (456)
|++++ +++++.|+.|++||+++ +. .......+...+.+++++| +
T Consensus 158 ~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~------------------------------- 205 (342)
T 1yfq_A 158 TNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE------------------------------- 205 (342)
T ss_dssp ECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGG-------------------------------
T ss_pred ecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCC-------------------------------
Confidence 99987 99999999999999998 44 3344456788899999999 7
Q ss_pred ccCCCCCEEEEEeCCCcEEEEecCCC-----CCCccccccccc---------cEeEEEECCCCCEEEEEECCCcEEEEeC
Q 012799 324 IKGNAPERLVSGSDDFTMFLWEPAVS-----KQPKTRMTGHQQ---------LVNHVYFSPDGQWVASASFDKSIKLWNG 389 (456)
Q Consensus 324 ~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~---------~v~~~~~sp~~~~l~s~~~dg~i~iwd~ 389 (456)
+.++++++.||.+++|++... ......+..|.. .|.+++|+|++++|++|+.||.|++||+
T Consensus 206 -----~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~ 280 (342)
T 1yfq_A 206 -----QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280 (342)
T ss_dssp -----GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred -----CCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence 456999999999999998776 355556666654 9999999999999999999999999999
Q ss_pred CCCeEEEEEecc-cccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCc
Q 012799 390 TTGKFVAVFRGH-VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDST 452 (456)
Q Consensus 390 ~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~ 452 (456)
.+++.+..+.+| ..+|.++ + |++++|++|+.||+
T Consensus 281 ~~~~~~~~~~~~h~~~v~~~---------------------------~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 281 QTRKKIKNFAKFNEDSVVKI---------------------------A--CSDNILCLATSDDT 315 (342)
T ss_dssp TTTEEEEECCCCSSSEEEEE---------------------------E--ECSSEEEEEEECTH
T ss_pred ccHhHhhhhhcccCCCceEe---------------------------c--CCCCeEEEEecCCc
Confidence 999999999998 9999999 7 99999999999998
No 47
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.2e-41 Score=314.78 Aligned_cols=286 Identities=16% Similarity=0.218 Sum_probs=228.5
Q ss_pred cccccCCcccEEEEEECC-CCCeEEEEECCCcEEEEeCCCCcce--eEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEE
Q 012799 101 SATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTPM--FKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQC 176 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~v 176 (456)
.....+|...|+|++|+| ++++||+|+.||+|+|||+.+++.. ..+.+|.+.|++|+|+| ++++|++|+.||+|++
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 345567999999999999 5679999999999999999877644 34568999999999998 7899999999999999
Q ss_pred EeCCCCCCcc-ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--e
Q 012799 177 WDPQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--V 253 (456)
Q Consensus 177 wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~ 253 (456)
||++++.... .....+...+.+++|+| ++.+|++|+.||.|++||++. +.+..+.+|...|.+++|+|++ .
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~ 265 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVSA-----SSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWF 265 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEET-----TTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSE
T ss_pred eeccCCceeEEeccCCCCccEEEEEECC-----CCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceE
Confidence 9998654322 11223345678899998 899999999999999999864 5567788999999999999987 7
Q ss_pred EEEEeCCCcEEEEECCCCeEEEE---eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCC
Q 012799 254 IYTGSQDCTIKVWETTQGKLIRE---LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330 (456)
Q Consensus 254 l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (456)
+++++.|+.|++||+++.+.... ..+|...|.+++|+|+ +.
T Consensus 266 ~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spd------------------------------------g~ 309 (435)
T 4e54_B 266 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPD------------------------------------GA 309 (435)
T ss_dssp EEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTT------------------------------------SS
T ss_pred EEEecCcceeeEEecccccccceEEEeeeccccccceeECCC------------------------------------CC
Confidence 88999999999999988764433 3568889999999998 66
Q ss_pred EEEEEeCCCcEEEEecCCCCCCccccccccc------cEeEEEECCCCCEEEEEE------------CCCcEEEEeCCCC
Q 012799 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ------LVNHVYFSPDGQWVASAS------------FDKSIKLWNGTTG 392 (456)
Q Consensus 331 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~v~~~~~sp~~~~l~s~~------------~dg~i~iwd~~~~ 392 (456)
+|++++.||.|++||+........ +..|.. .+....|+|++.++++++ .++.|++||..++
T Consensus 310 ~l~s~~~D~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g 388 (435)
T 4e54_B 310 RLLTTDQKSEIRVYSASQWDCPLG-LIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG 388 (435)
T ss_dssp EEEEEESSSCEEEEESSSSSSEEE-ECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC
T ss_pred eeEEEcCCCEEEEEECCCCccceE-EecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC
Confidence 799999999999999876554322 222221 233456777776666654 3457999999999
Q ss_pred eEEEEEe-cccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 393 KFVAVFR-GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 393 ~~~~~~~-~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+.+..+. +|...|.++. +|+|+|++|++|+ |++|+||
T Consensus 389 ~~~~~l~~~~~~~v~s~~--------------------------~fspdg~~lasg~-d~~i~iW 426 (435)
T 4e54_B 389 KMMCQLYDPESSGISSLN--------------------------EFNPMGDTLASAM-GYHILIW 426 (435)
T ss_dssp CEEEEECCSSCCCCCCEE--------------------------EECTTSSCEEEEC-SSEEEEC
T ss_pred cEEEEEeCCCCCcEEEEE--------------------------EECCCCCEEEEEc-CCcEEEE
Confidence 9988765 6777777661 5899999999876 8899999
No 48
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.9e-40 Score=308.21 Aligned_cols=295 Identities=19% Similarity=0.234 Sum_probs=246.9
Q ss_pred eEEEeecc--cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEE
Q 012799 91 VFRIRPVN--RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG 168 (456)
Q Consensus 91 ~~~~~~~~--~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 168 (456)
.+.+|... .....+.+| ..+....|+|++++||+|+.||.|++||+.+++....+.+|...|.+++|+|++++|+++
T Consensus 79 ~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 157 (420)
T 3vl1_A 79 HDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISS 157 (420)
T ss_dssp EEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEE
T ss_pred cEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEE
Confidence 34445432 345556666 555666889999999999999999999999988888888999999999999999999999
Q ss_pred eCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC---cCccEEE
Q 012799 169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG---HTLAVTC 245 (456)
Q Consensus 169 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~ 245 (456)
+.|+.|++||+++++... .+.+|...|.+++|+| ++.+|++++.||.|++||+++++.+..+.. +...+.+
T Consensus 158 s~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~~-----~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~ 231 (420)
T 3vl1_A 158 SQDMQLKIWSVKDGSNPR-TLIGHRATVTDIAIID-----RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNS 231 (420)
T ss_dssp ETTSEEEEEETTTCCCCE-EEECCSSCEEEEEEET-----TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEE
T ss_pred eCCCeEEEEeCCCCcCce-EEcCCCCcEEEEEEcC-----CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccE
Confidence 999999999999988765 5678999999999999 899999999999999999999999988864 3344444
Q ss_pred ---------------------EEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCcceEEEEecCcceeeeccccC
Q 012799 246 ---------------------VKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDH 302 (456)
Q Consensus 246 ---------------------~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~ 302 (456)
++|+|++ .+++++.||.|++||+++++.+..+. .|...+.+++|+|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~---------- 301 (420)
T 3vl1_A 232 IALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGN---------- 301 (420)
T ss_dssp EEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSS----------
T ss_pred EEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCC----------
Confidence 4557888 89999999999999999998877765 47889999999998
Q ss_pred CCCccCChHHHHHHHHhhhhhccCCCCC-EEEEEeCCCcEEEEecCCCCCCcccccc-ccccEeEEEECCCCCEEEEEEC
Q 012799 303 TGKQYSSPEEMKKAALERYNKIKGNAPE-RLVSGSDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQWVASASF 380 (456)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~s~~~ 380 (456)
+. ++++|+.||.|++||++....+...+.. |...|.++.+ +++++|++++.
T Consensus 302 --------------------------~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~ 354 (420)
T 3vl1_A 302 --------------------------NANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGF 354 (420)
T ss_dssp --------------------------CTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETT
T ss_pred --------------------------CCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecC
Confidence 34 7999999999999999887665665655 6778888865 57889999999
Q ss_pred CCcEEEEeCCCCe---------EEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCC---eEEEee
Q 012799 381 DKSIKLWNGTTGK---------FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR---LLLSGS 448 (456)
Q Consensus 381 dg~i~iwd~~~~~---------~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~---~l~s~s 448 (456)
||.|++|++.... ....+..|.+.|.++ +|+|+++ .|++++
T Consensus 355 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---------------------------~~s~~~~~~g~l~a~g 407 (420)
T 3vl1_A 355 DTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQF---------------------------CYVSDDESNGEVLEVG 407 (420)
T ss_dssp TEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEE---------------------------EEECCSSSSCEEEEEE
T ss_pred CccEEEEeccCCCCCccceeccCccEEccCCcceEEE---------------------------EEccCCCCcceEEEEc
Confidence 9999999987732 122345666777777 8999999 788889
Q ss_pred CCCceEEC
Q 012799 449 KDSTLKVT 456 (456)
Q Consensus 449 ~Dg~v~iW 456 (456)
.+|.+++|
T Consensus 408 ~~g~~~~~ 415 (420)
T 3vl1_A 408 KNNFCALY 415 (420)
T ss_dssp TTTEEEEE
T ss_pred CCceEEEE
Confidence 99999998
No 49
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.3e-39 Score=294.06 Aligned_cols=273 Identities=21% Similarity=0.377 Sum_probs=238.8
Q ss_pred CcCcccEEEEEEeccc----------eEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCC--
Q 012799 75 KVSVEKVLSIVYQPQA----------VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ-- 140 (456)
Q Consensus 75 ~~~~~~~~~~~~~~~~----------~~~~~~~--~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~-- 140 (456)
..+...+..+.|.|+. .+++|.. ....+.+..|...|.+++|+|+|++||+|+.|+.+++|++...
T Consensus 61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~ 140 (354)
T 2pbi_B 61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKN 140 (354)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTT
T ss_pred cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccc
Confidence 3467788999998864 4566653 4456778889999999999999999999999999999998653
Q ss_pred ----cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEE
Q 012799 141 ----TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216 (456)
Q Consensus 141 ----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 216 (456)
.....+.+|...|.+++|+|++..|++++.|++|++||+++++... .+.+|...|.+++|.|.. ++++|++|
T Consensus 141 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~-~~~~h~~~v~~~~~~~~~---~g~~l~sg 216 (354)
T 2pbi_B 141 ENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ-SFHGHGADVLCLDLAPSE---TGNTFVSG 216 (354)
T ss_dssp CCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECCCS---SCCEEEEE
T ss_pred ccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEE-EEcCCCCCeEEEEEEeCC---CCCEEEEE
Confidence 3456677899999999999999999999999999999999988765 577899999999998732 56899999
Q ss_pred eCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecC--CcceEEEEecCcc
Q 012799 217 SKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGH--GHWVNSLALSTEY 293 (456)
Q Consensus 217 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~~ 293 (456)
+.||.|++||+++++++..+.+|...|.+++|+|++ .|++++.|++|++||++.++.+..+..+ ...+.+++|+|+
T Consensus 217 s~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~- 295 (354)
T 2pbi_B 217 GCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLS- 295 (354)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT-
T ss_pred eCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCC-
Confidence 999999999999999999999999999999999998 9999999999999999998877766543 346889999987
Q ss_pred eeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCC
Q 012799 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ 373 (456)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 373 (456)
+.++++|+.|+.|++||+..+. ....+.+|...|++++|+|+|+
T Consensus 296 -----------------------------------g~~l~~g~~d~~i~vwd~~~~~-~~~~l~~h~~~v~~l~~spdg~ 339 (354)
T 2pbi_B 296 -----------------------------------GRLLFAGYNDYTINVWDVLKGS-RVSILFGHENRVSTLRVSPDGT 339 (354)
T ss_dssp -----------------------------------SSEEEEEETTSCEEEEETTTCS-EEEEECCCSSCEEEEEECTTSS
T ss_pred -----------------------------------CCEEEEEECCCcEEEEECCCCc-eEEEEECCCCcEEEEEECCCCC
Confidence 5679999999999999986654 4556789999999999999999
Q ss_pred EEEEEECCCcEEEEe
Q 012799 374 WVASASFDKSIKLWN 388 (456)
Q Consensus 374 ~l~s~~~dg~i~iwd 388 (456)
+|++|+.||.|++|+
T Consensus 340 ~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 340 AFCSGSWDHTLRVWA 354 (354)
T ss_dssp CEEEEETTSEEEEEC
T ss_pred EEEEEcCCCCEEecC
Confidence 999999999999996
No 50
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.5e-40 Score=302.06 Aligned_cols=247 Identities=19% Similarity=0.270 Sum_probs=207.4
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCccee----EEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 012799 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF----KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (456)
Q Consensus 102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 177 (456)
....+|...|++++|+|+++ +++++.||+|+|||+.+++... ...+|...|++++|+|++++|++|+.|+.|++|
T Consensus 88 ~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw 166 (357)
T 4g56_B 88 TAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW 166 (357)
T ss_dssp SEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred cccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 34457999999999999986 5567789999999998876442 345799999999999999999999999999999
Q ss_pred eCCCCCCccccccCcccceEEEEecccccCCCC-CEEEEEeCCCcEEEEECCCCeEEEEe--cCcCccEEEEEeCCCC--
Q 012799 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPC-RRFVSASKDGDARIWDVSLRKCVICL--SGHTLAVTCVKWGGDG-- 252 (456)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~-- 252 (456)
|+++++... .+.+|...|.+++|+| ++ ..+++++.||.|++||++++++...+ ..+...+.+++|+|++
T Consensus 167 d~~~~~~~~-~~~~h~~~v~~v~~s~-----~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 240 (357)
T 4g56_B 167 DLSQKAVLK-SYNAHSSEVNCVAACP-----GKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDD 240 (357)
T ss_dssp ETTTTEEEE-EECCCSSCEEEEEECT-----TCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTT
T ss_pred ECCCCcEEE-EEcCCCCCEEEEEEcc-----CCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccc
Confidence 999988765 5788999999999998 55 47899999999999999988876554 3567789999999975
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE
Q 012799 253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (456)
Q Consensus 253 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 332 (456)
.|++|+.|+.|++||+++++.+..+..|...|.+++|+|++ +.+|
T Consensus 241 ~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~-----------------------------------~~~l 285 (357)
T 4g56_B 241 TFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHS-----------------------------------SPFL 285 (357)
T ss_dssp EEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSS-----------------------------------SCCE
T ss_pred eEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCC-----------------------------------CCEE
Confidence 78899999999999999999999999999999999999873 3468
Q ss_pred EEEeCCCcEEEEecCCCCCCccccccccccEeEEEECC-CCCEEEEEECCCcEEEEeCCCC
Q 012799 333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTG 392 (456)
Q Consensus 333 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~ 392 (456)
++|+.|++|++||+..++ .. ...+|...|++++|+| ++++|++|+.||+|++|++.+.
T Consensus 286 asgs~D~~i~iwd~~~~~-~~-~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 286 ASISEDCTVAVLDADFSE-VF-RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEETTSCEEEECTTSCE-EE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEEeCCCEEEEEECCCCc-Ee-EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 999999999999987653 23 3458999999999999 8999999999999999999764
No 51
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-40 Score=293.95 Aligned_cols=273 Identities=24% Similarity=0.343 Sum_probs=213.5
Q ss_pred CcccEEEEEEecc--------ceEEEeecc----cccccc-cC-CcccEEEEEECCCCCeEEEEECCCcEEEEeCCC---
Q 012799 77 SVEKVLSIVYQPQ--------AVFRIRPVN----RCSATI-AG-HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT--- 139 (456)
Q Consensus 77 ~~~~~~~~~~~~~--------~~~~~~~~~----~~~~~l-~~-h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~--- 139 (456)
+.+.+..+.+.|+ ..+++|... .....+ .+ |.+.|.+++|+|++++||+|+.|++|++||+..
T Consensus 13 h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~ 92 (330)
T 2hes_X 13 YKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESAD 92 (330)
T ss_dssp CSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-----
T ss_pred CCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcC
Confidence 4455666666654 233444432 233445 44 999999999999999999999999999999853
Q ss_pred ----CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC-C--ccccccCcccceEEEEecccccCCCCCE
Q 012799 140 ----QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK-P--SGNPLSGHKKWITGISWEPVHLNAPCRR 212 (456)
Q Consensus 140 ----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 212 (456)
.+.+..+.+|...|.+++|+|++++|++|+.|++|++||++... . ....+.+|...|.+++|+| ++.+
T Consensus 93 ~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-----~~~~ 167 (330)
T 2hes_X 93 RTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-----SEAL 167 (330)
T ss_dssp --CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-----SSSE
T ss_pred ccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-----CCCE
Confidence 34566788999999999999999999999999999999995432 1 1224678999999999999 8899
Q ss_pred EEEEeCCCcEEEEECCCC--eEEEEecCcCccEEEEEeCCC--C-eEEEEeCCCcEEEEECCCC--------eEEEEeec
Q 012799 213 FVSASKDGDARIWDVSLR--KCVICLSGHTLAVTCVKWGGD--G-VIYTGSQDCTIKVWETTQG--------KLIRELKG 279 (456)
Q Consensus 213 l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~dg~i~iwd~~~~--------~~~~~~~~ 279 (456)
|++++.|+.|++||..++ +++..+.+|...|.+++|+|+ + .+++++.|++|++||++.+ .....+..
T Consensus 168 l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~ 247 (330)
T 2hes_X 168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD 247 (330)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS
T ss_pred EEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc
Confidence 999999999999999776 678889999999999999998 5 7999999999999998754 34445554
Q ss_pred -CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC--CCcccc
Q 012799 280 -HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK--QPKTRM 356 (456)
Q Consensus 280 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~ 356 (456)
|...|.+++|+++ ..+++++.||.|++||...+. ......
T Consensus 248 ~h~~~v~~v~~s~~-------------------------------------~~l~s~~~dg~v~iw~~~~~~~~~~~~~~ 290 (330)
T 2hes_X 248 VHKRQVYNVAWGFN-------------------------------------GLIASVGADGVLAVYEEVDGEWKVFAKRA 290 (330)
T ss_dssp CCSSCEEEEEECTT-------------------------------------SCEEEEETTSCEEEEEEETTEEEEEEEES
T ss_pred ccccceEEEEEcCC-------------------------------------CEEEEEeCCCEEEEEEcCCCceEEEeccc
Confidence 8889999999864 259999999999999976542 122234
Q ss_pred ccccc-cEeEEEECC--CCCEEEEEECCCcEEEEeCCC
Q 012799 357 TGHQQ-LVNHVYFSP--DGQWVASASFDKSIKLWNGTT 391 (456)
Q Consensus 357 ~~~~~-~v~~~~~sp--~~~~l~s~~~dg~i~iwd~~~ 391 (456)
.+|.. .|.+++|+| ++++|++|+.||.|++||+++
T Consensus 291 ~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 291 LCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 57776 899999999 789999999999999999864
No 52
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.1e-39 Score=301.12 Aligned_cols=291 Identities=19% Similarity=0.317 Sum_probs=243.3
Q ss_pred cccccccCCcccEEEEEECC-CCCeEEEEECCCcEEEEeCCCCcceeEEe-------------cCCCCEEEEEEcC-CCC
Q 012799 99 RCSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTPMFKCT-------------GHKNWVLCIAWSA-DGK 163 (456)
Q Consensus 99 ~~~~~l~~h~~~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-------------~~~~~v~~~~~~~-~~~ 163 (456)
.....+.+|.+.|++++|+| ++++||+|+.||.|++||+.+++....+. +|...|.+++|+| +++
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence 34556788999999999999 99999999999999999999877665543 5999999999999 788
Q ss_pred EEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccE
Q 012799 164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV 243 (456)
Q Consensus 164 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 243 (456)
+|++++.||.|++||+.+++... ...+...+.++.|.|.. .++.++++++.||.|++||+++++.+..+..|...|
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v 189 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTAD--VFNFEETVYSHHMSPVS--TKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEI 189 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEE--EEECSSCEEEEEECSSC--SSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCE
T ss_pred EEEEEeCCCeEEEeeCCCCccce--eccCCCceeeeEeecCC--CCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcE
Confidence 99999999999999999887654 33467789999998842 355699999999999999999999999999999999
Q ss_pred EEEEeCCCC--eEEEEeCCCcEEEEECCCCe-EEEEe---------------ecCCcceEEEEecCcceeeeccccCCCC
Q 012799 244 TCVKWGGDG--VIYTGSQDCTIKVWETTQGK-LIREL---------------KGHGHWVNSLALSTEYALRTGAFDHTGK 305 (456)
Q Consensus 244 ~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~-~~~~~---------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 305 (456)
.+++|+|++ .+++++.||.|++||++++. .+..+ ..|...|.+++|+|+
T Consensus 190 ~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------- 256 (408)
T 4a11_B 190 LAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD------------- 256 (408)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT-------------
T ss_pred EEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC-------------
Confidence 999999998 58899999999999998765 33333 467888999999998
Q ss_pred ccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccc----cccccEeEEEECCCCCEEEEEECC
Q 012799 306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT----GHQQLVNHVYFSPDGQWVASASFD 381 (456)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~s~~~d 381 (456)
+.++++++.||.|++||+........... .....+........+..+++++.|
T Consensus 257 -----------------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (408)
T 4a11_B 257 -----------------------GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG 313 (408)
T ss_dssp -----------------------SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEET
T ss_pred -----------------------CCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecC
Confidence 66799999999999999877654322111 111122222233345567777889
Q ss_pred CcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 382 KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 382 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
|.|++||+.+++.+..+.+|...|.++ +|+|++++|++|+.||.|++|
T Consensus 314 ~~i~v~d~~~~~~~~~~~~~~~~v~~~---------------------------~~s~~~~~l~s~~~dg~i~iw 361 (408)
T 4a11_B 314 STIAVYTVYSGEQITMLKGHYKTVDCC---------------------------VFQSNFQELYSGSRDCNILAW 361 (408)
T ss_dssp TEEEEEETTTCCEEEEECCCSSCEEEE---------------------------EEETTTTEEEEEETTSCEEEE
T ss_pred CEEEEEECcCCcceeeeccCCCeEEEE---------------------------EEcCCCCEEEEECCCCeEEEE
Confidence 999999999999999999999999999 899999999999999999999
No 53
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.3e-40 Score=296.50 Aligned_cols=278 Identities=16% Similarity=0.269 Sum_probs=244.1
Q ss_pred CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 012799 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (456)
Q Consensus 107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 186 (456)
|.++|.+++|+|||++++++..++.+.+|............+|...|.+++|+|++++|++++ ||.|++||+.+++...
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 567899999999999999988887777776665555555568999999999999999999999 9999999998876443
Q ss_pred cccc----CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe--EEEEecCcCccEEEEEeCCCC-eEEEEeC
Q 012799 187 NPLS----GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK--CVICLSGHTLAVTCVKWGGDG-VIYTGSQ 259 (456)
Q Consensus 187 ~~~~----~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~l~~~~~ 259 (456)
.... .|...|.+++|+| +++++++++.||.|++||+++++ ....+..|...+.+++|+|++ .+++++.
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 161 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLP-----DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS 161 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECT-----TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred eeecccccCCCCcEEEEEEcC-----CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC
Confidence 2222 7889999999999 88999999999999999999877 666778899999999999998 8999999
Q ss_pred CCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC
Q 012799 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339 (456)
Q Consensus 260 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 339 (456)
||.|++||+++++.+..+..|...+.+++++|+ +.++++++.|+
T Consensus 162 dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~------------------------------------~~~l~~~~~dg 205 (337)
T 1gxr_A 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISND------------------------------------GTKLWTGGLDN 205 (337)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTT------------------------------------SSEEEEEETTS
T ss_pred CCcEEEEeCCCCceeeeeecccCceEEEEECCC------------------------------------CCEEEEEecCC
Confidence 999999999999999999999999999999998 56699999999
Q ss_pred cEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCC
Q 012799 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYP 419 (456)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~ 419 (456)
.|++||++...... ...+...+.+++|+|++++|++++.||.|++||+.+++.. .+..|...|.++
T Consensus 206 ~i~~~d~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~----------- 271 (337)
T 1gxr_A 206 TVRSWDLREGRQLQ--QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSL----------- 271 (337)
T ss_dssp EEEEEETTTTEEEE--EEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEE-----------
T ss_pred cEEEEECCCCceEe--eecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEE-----------
Confidence 99999987654322 2356788999999999999999999999999999988754 567899999999
Q ss_pred CCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 420 SNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+|+|++++|++++.||.|++|
T Consensus 272 ----------------~~~~~~~~l~~~~~dg~i~~~ 292 (337)
T 1gxr_A 272 ----------------KFAYCGKWFVSTGKDNLLNAW 292 (337)
T ss_dssp ----------------EECTTSSEEEEEETTSEEEEE
T ss_pred ----------------EECCCCCEEEEecCCCcEEEE
Confidence 899999999999999999998
No 54
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.7e-41 Score=299.96 Aligned_cols=254 Identities=22% Similarity=0.373 Sum_probs=209.7
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc--ceeEEecCCCCEEEEEEcC--CCCEEEEEeCCCeEEEE
Q 012799 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCW 177 (456)
Q Consensus 102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vw 177 (456)
..+.+|.+.|++++|+|+|++||+|+.|++|++||+.++. .+..+.+|...|.+++|++ ++++|++|+.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3567999999999999999999999999999999998764 4567889999999999986 48999999999999999
Q ss_pred eCCCCCCc-cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE---EEEecCcCccEEEEEeCCC--
Q 012799 178 DPQTGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC---VICLSGHTLAVTCVKWGGD-- 251 (456)
Q Consensus 178 d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~-- 251 (456)
|+++++.. ...+.+|...|.+++|+|.. ++.+|++|+.|+.|++||++.+.. ...+.+|...+.+++|+|+
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~---~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 163 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHD---YGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVV 163 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTT---TCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCC
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCC---CCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccC
Confidence 99887532 22467899999999999921 278999999999999999987632 3455788999999999987
Q ss_pred ---------------C-eEEEEeCCCcEEEEECCCC---eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHH
Q 012799 252 ---------------G-VIYTGSQDCTIKVWETTQG---KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312 (456)
Q Consensus 252 ---------------~-~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (456)
+ .|++|+.|+.|++||++.+ +.+..+.+|...|.+++|+|+...
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~----------------- 226 (316)
T 3bg1_A 164 PGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGL----------------- 226 (316)
T ss_dssp C------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSC-----------------
T ss_pred CccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCC-----------------
Confidence 3 7999999999999999765 467788899999999999997311
Q ss_pred HHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC---CCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeC
Q 012799 313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK---QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389 (456)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~ 389 (456)
++.+|++++.|++|++||+.... .....+..|...|.+++|+|++++|++++.||.|++|+.
T Consensus 227 ---------------~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 227 ---------------PTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp ---------------SCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred ---------------CCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence 13579999999999999976521 123345678899999999999999999999999999997
Q ss_pred C
Q 012799 390 T 390 (456)
Q Consensus 390 ~ 390 (456)
.
T Consensus 292 ~ 292 (316)
T 3bg1_A 292 S 292 (316)
T ss_dssp C
T ss_pred C
Confidence 5
No 55
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.2e-40 Score=303.62 Aligned_cols=277 Identities=15% Similarity=0.122 Sum_probs=222.6
Q ss_pred cccEEEEEECCCCCeEEEEECCC-------cEEEEeCCCCcce----------eEEecCCCCEEEEEEcCCCCEEEEEe-
Q 012799 108 TEAVLSVAFSPDGRQLASGSGDT-------TVRLWDLNTQTPM----------FKCTGHKNWVLCIAWSADGKHLVSGS- 169 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d~-------~v~vwd~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~l~s~~- 169 (456)
.-||++++|+||+++||+|+.+. .|++|++...... ..+.+|...|.+++++ ++.+++|.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 45899999999999999998643 5999998765321 2456788889988874 55666654
Q ss_pred ----------CCCeEEEEeCCCCCCccc--------cccCcccceEEEEecccccCCCCCEEEEEe--CCCcEEEEECCC
Q 012799 170 ----------KAGELQCWDPQTGKPSGN--------PLSGHKKWITGISWEPVHLNAPCRRFVSAS--KDGDARIWDVSL 229 (456)
Q Consensus 170 ----------~dg~i~vwd~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~ 229 (456)
.|+.+++|++........ ....+...+..++|+| +|+++++++ .|++|++||+++
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp-----Dg~~la~as~~~d~~i~iwd~~~ 166 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR-----EGTVAAIASSKVPAIMRIIDPSD 166 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT-----TSSCEEEEESCSSCEEEEEETTT
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC-----CCCEEEEEECCCCCEEEEeECCC
Confidence 567899999876543211 1233455688999999 999887554 689999999999
Q ss_pred CeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEE--eecCCcceEEEEecCcceeeeccccCCCCc
Q 012799 230 RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRE--LKGHGHWVNSLALSTEYALRTGAFDHTGKQ 306 (456)
Q Consensus 230 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 306 (456)
++++..+. |...|.+++|+|+| ++++++ ++.+++|+..+++.+.. ...|...+.+++|+|+
T Consensus 167 ~~~~~~~~-~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspd-------------- 230 (365)
T 4h5i_A 167 LTEKFEIE-TRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIAD-------------- 230 (365)
T ss_dssp TEEEEEEE-CSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEET--------------
T ss_pred CcEEEEeC-CCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCC--------------
Confidence 99998886 77889999999999 555555 56677888777766543 3568889999999998
Q ss_pred cCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC----cEEEEecCCCCCC---ccccccccccEeEEEECCCCCEEEEEE
Q 012799 307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDF----TMFLWEPAVSKQP---KTRMTGHQQLVNHVYFSPDGQWVASAS 379 (456)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~sp~~~~l~s~~ 379 (456)
+..+++++.|+ .++.|++...... ...+.+|...|++++|+|||++||+|+
T Consensus 231 ----------------------g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs 288 (365)
T 4h5i_A 231 ----------------------DTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS 288 (365)
T ss_dssp ----------------------TEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE
T ss_pred ----------------------CCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc
Confidence 55588888877 5888886654322 234668899999999999999999999
Q ss_pred CCCcEEEEeCCCCeEEEEE-ecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 380 FDKSIKLWNGTTGKFVAVF-RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 380 ~dg~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.||.|+|||+.+++++..+ .+|..+|+++ +|+|||++|||||.|++||||
T Consensus 289 ~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v---------------------------~fSpdg~~laS~S~D~tvrvw 339 (365)
T 4h5i_A 289 NDNSIALVKLKDLSMSKIFKQAHSFAITEV---------------------------TISPDSTYVASVSAANTIHII 339 (365)
T ss_dssp TTSCEEEEETTTTEEEEEETTSSSSCEEEE---------------------------EECTTSCEEEEEETTSEEEEE
T ss_pred CCCEEEEEECCCCcEEEEecCcccCCEEEE---------------------------EECCCCCEEEEEeCCCeEEEE
Confidence 9999999999999999875 7899999999 999999999999999999998
No 56
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.2e-40 Score=332.90 Aligned_cols=270 Identities=21% Similarity=0.306 Sum_probs=245.0
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 179 (456)
..+.+.+|.+.|++++|+|++++||+|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC-eEEEEecCcCccEEEEEeCC-CC-eEEE
Q 012799 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGG-DG-VIYT 256 (456)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~-~l~~ 256 (456)
.+++... .+.+|...|.+++|+| ++.++++++.||.|++||+.++ .....+.+|...|.+++|+| ++ .+++
T Consensus 85 ~~~~~~~-~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 158 (814)
T 3mkq_A 85 NTGEKVV-DFEAHPDYIRSIAVHP-----TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (814)
T ss_dssp TTCCEEE-EEECCSSCEEEEEECS-----SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEE
T ss_pred CCCcEEE-EEecCCCCEEEEEEeC-----CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEE
Confidence 9988765 5678999999999999 8999999999999999999987 77788889999999999999 66 8999
Q ss_pred EeCCCcEEEEECCCCeEEEEeecCC-cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEE
Q 012799 257 GSQDCTIKVWETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (456)
Q Consensus 257 ~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (456)
++.||.|++||+.+++....+..+. ..+..++|+|. +++.+++++
T Consensus 159 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~----------------------------------~~~~~l~~~ 204 (814)
T 3mkq_A 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL----------------------------------PDKPYMITA 204 (814)
T ss_dssp EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCS----------------------------------TTCCEEEEE
T ss_pred EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEEC----------------------------------CCCCEEEEE
Confidence 9999999999999888777776554 88999999982 126679999
Q ss_pred eCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410 (456)
Q Consensus 336 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 410 (456)
+.||.|++||+.... ....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+..|...+.++.|
T Consensus 205 ~~dg~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~ 278 (814)
T 3mkq_A 205 SDDLTIKIWDYQTKS-CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIAT 278 (814)
T ss_dssp CTTSEEEEEETTTTE-EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEE
T ss_pred eCCCEEEEEECCCCc-EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEE
Confidence 999999999976644 45667789999999999999999999999999999999999999999999999999943
No 57
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.8e-39 Score=315.62 Aligned_cols=343 Identities=17% Similarity=0.269 Sum_probs=279.6
Q ss_pred CcccEEEEEEeccc--------------eEEEeecccccccccCCcccEEEEEECCCCC-eEEEEECCCcEEEEeCCCCc
Q 012799 77 SVEKVLSIVYQPQA--------------VFRIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQT 141 (456)
Q Consensus 77 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~-~l~~~~~d~~v~vwd~~~~~ 141 (456)
+...+..+.|.|+. .+.++..+.....+.+|.+.|.+++|+|+++ ++++++.|+.|++||+.+++
T Consensus 115 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~ 194 (615)
T 1pgu_A 115 LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK 194 (615)
T ss_dssp CSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE
T ss_pred ccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc
Confidence 45667778888764 3445556677888999999999999999998 89999999999999999999
Q ss_pred ceeEEecCCC---CEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCCcccccc---CcccceEEEEecccccCCCCCEEE
Q 012799 142 PMFKCTGHKN---WVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKPSGNPLS---GHKKWITGISWEPVHLNAPCRRFV 214 (456)
Q Consensus 142 ~~~~~~~~~~---~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~l~ 214 (456)
.+..+.+|.. .|.+++|+|+ +++|++++.||.|++||+++++....... .|...|.+++|+ ++.+++
T Consensus 195 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~l~ 268 (615)
T 1pgu_A 195 FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL------DSQKFA 268 (615)
T ss_dssp EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES------SSSEEE
T ss_pred eeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc------CCCEEE
Confidence 9999999999 9999999999 99999999999999999999887764325 899999999996 457999
Q ss_pred EEeCCCcEEEEECCCCeEEEEecCc----CccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEec
Q 012799 215 SASKDGDARIWDVSLRKCVICLSGH----TLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS 290 (456)
Q Consensus 215 ~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~ 290 (456)
+++.||.|++||+++++.+..+..+ ...+.++.+.....+++++.||.|++||+.+++.+..+..|...|.++++
T Consensus 269 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~- 347 (615)
T 1pgu_A 269 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV- 347 (615)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-
T ss_pred EEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-
Confidence 9999999999999999999888766 46788888874449999999999999999999999999889888988888
Q ss_pred CcceeeeccccCCCCccCCh-----------------HHHH-----HHHH------------------------------
Q 012799 291 TEYALRTGAFDHTGKQYSSP-----------------EEMK-----KAAL------------------------------ 318 (456)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~-----~~~~------------------------------ 318 (456)
|+ +.++..+.....|... .... ....
T Consensus 348 ~~--l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 425 (615)
T 1pgu_A 348 NP--LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTN 425 (615)
T ss_dssp TT--TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEET
T ss_pred cC--cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeC
Confidence 66 4444444333332211 0000 0000
Q ss_pred ---------------------hhhhhccCCCCCEEEEEeC-CCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEE
Q 012799 319 ---------------------ERYNKIKGNAPERLVSGSD-DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA 376 (456)
Q Consensus 319 ---------------------~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 376 (456)
.....+... ++++++++. |+.|++||+.........+.+|...|++++|+|++++|+
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 504 (615)
T 1pgu_A 426 DDDLLILQSFTGDIIKSVRLNSPGSAVSLS-QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIA 504 (615)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCEEEEEEC-SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEE
T ss_pred CCceEEEeccCCceeeecccCCCceEEEEc-CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEE
Confidence 000000000 667888888 899999997654322155678999999999999999999
Q ss_pred EEECCCcEEEEeCCCCeEEEEEec-ccccEEEEEeeeeeeecCCCCceeeecccccccceeEec----------CCCeEE
Q 012799 377 SASFDKSIKLWNGTTGKFVAVFRG-HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA----------DSRLLL 445 (456)
Q Consensus 377 s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----------dg~~l~ 445 (456)
+++.||.|++||+.+++.+..+.+ |...|+++ +|+| ++++|+
T Consensus 505 ~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~---------------------------~~sp~~~~~~~~~~~~~~l~ 557 (615)
T 1pgu_A 505 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAI---------------------------SWKPAEKGANEEEIEEDLVA 557 (615)
T ss_dssp EEETTSCEEEEETTTTEEEECCSCCCSSCEEEE---------------------------EECCCC------CCSCCEEE
T ss_pred EcCCCCeEEEeeCCCCcceeEeecCCCCceeEE---------------------------EEcCccccccccccCCCEEE
Confidence 999999999999999999999888 99999999 8999 999999
Q ss_pred EeeCCCceEEC
Q 012799 446 SGSKDSTLKVT 456 (456)
Q Consensus 446 s~s~Dg~v~iW 456 (456)
+|+.||.|+||
T Consensus 558 ~~~~dg~i~iw 568 (615)
T 1pgu_A 558 TGSLDTNIFIY 568 (615)
T ss_dssp EEETTSCEEEE
T ss_pred EEcCCCcEEEE
Confidence 99999999998
No 58
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.5e-40 Score=344.56 Aligned_cols=288 Identities=24% Similarity=0.391 Sum_probs=260.4
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 180 (456)
...+.+|.+.|++++|+|+|++||+|+.||+|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeC
Q 012799 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ 259 (456)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~ 259 (456)
+++... .+.+|...|.+++|+|.. ++..+++|+.||.|++||+++++++..+.+|...|++++|+|++ .+++++.
T Consensus 688 ~~~~~~-~~~~~~~~v~~~~~~~~~---~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 763 (1249)
T 3sfz_A 688 TGKLVH-TYDEHSEQVNCCHFTNKS---NHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 763 (1249)
T ss_dssp TCCEEE-EEECCSSCEEEEEECSSS---SCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred CCceEE-EEcCCCCcEEEEEEecCC---CceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence 988765 577899999999999833 45689999999999999999999999999999999999999999 9999999
Q ss_pred CCcEEEEECCCCeEEEEeecCC-------------cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccC
Q 012799 260 DCTIKVWETTQGKLIRELKGHG-------------HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326 (456)
Q Consensus 260 dg~i~iwd~~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (456)
||.|++||+++++....+.... ..+.+++|+|+
T Consensus 764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---------------------------------- 809 (1249)
T 3sfz_A 764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD---------------------------------- 809 (1249)
T ss_dssp SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTT----------------------------------
T ss_pred CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCC----------------------------------
Confidence 9999999999988777664321 24555666665
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEE
Q 012799 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY 406 (456)
Q Consensus 327 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 406 (456)
+..+++++ ++.+.+||+...........+|...|.+++|+|+++++++++.||.|++||+.++..+..+.+|.+.|.
T Consensus 810 --g~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~ 886 (1249)
T 3sfz_A 810 --GDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH 886 (1249)
T ss_dssp --SSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred --CCEEEEEc-CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceE
Confidence 56677766 789999998877766666668999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 407 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
++ +|+|+|++|++++.||.|++|
T Consensus 887 ~v---------------------------~~spdg~~l~s~s~dg~v~vw 909 (1249)
T 3sfz_A 887 GV---------------------------MFSPDGSSFLTASDDQTIRVW 909 (1249)
T ss_dssp EE---------------------------EECTTSSEEEEEETTSCEEEE
T ss_pred EE---------------------------EECCCCCEEEEEeCCCeEEEE
Confidence 99 899999999999999999998
No 59
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=7.8e-40 Score=299.57 Aligned_cols=288 Identities=16% Similarity=0.236 Sum_probs=240.2
Q ss_pred cccccccCCcccEEEEEECCC---CCeEEEEECCCcEEEEeCCC-Ccce-eEEecCCCCEEEEEEcCCCCEEEEEeCCCe
Q 012799 99 RCSATIAGHTEAVLSVAFSPD---GRQLASGSGDTTVRLWDLNT-QTPM-FKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173 (456)
Q Consensus 99 ~~~~~l~~h~~~V~~~~~s~~---~~~l~~~~~d~~v~vwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 173 (456)
+..+.+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +..+ ..+.+|...|.+++|+|++++|++++.||.
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence 455678999999999999999 69999999999999999987 4444 678899999999999999999999999999
Q ss_pred EEEEeCCCCCCccccccCcccceEEEEe--cccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCC
Q 012799 174 LQCWDPQTGKPSGNPLSGHKKWITGISW--EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD 251 (456)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 251 (456)
|++||+++++... ...|...|.+++| +| ++.+|++++.||.|++||+++++.+..+..+. .+.++.+.++
T Consensus 110 v~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~-----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~ 181 (368)
T 3mmy_A 110 AKMWDLSSNQAIQ--IAQHDAPVKTIHWIKAP-----NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIYP 181 (368)
T ss_dssp EEEEETTTTEEEE--EEECSSCEEEEEEEECS-----SCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEETT
T ss_pred EEEEEcCCCCcee--eccccCceEEEEEEeCC-----CCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecCC
Confidence 9999999887654 6679999999999 66 88899999999999999999998888887654 6677777755
Q ss_pred CeEEEEeCCCcEEEEECCCCeEEEEee--cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCC
Q 012799 252 GVIYTGSQDCTIKVWETTQGKLIRELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (456)
Q Consensus 252 ~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (456)
.+++++.++.+++|+++......... ........+.+.+.... ..
T Consensus 182 -~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~ 228 (368)
T 3mmy_A 182 -MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN--------------------------------KP 228 (368)
T ss_dssp -EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS--------------------------------CE
T ss_pred -eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC--------------------------------CC
Confidence 78889999999999998765433321 23344455554443110 12
Q ss_pred CEEEEEeCCCcEEEEecCCCC--CCccccccccc------------cEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEE
Q 012799 330 ERLVSGSDDFTMFLWEPAVSK--QPKTRMTGHQQ------------LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395 (456)
Q Consensus 330 ~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~------------~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~ 395 (456)
..+++++.||.|++||++... .....+.+|.. .|++++|+|++++|++|+.||.|++||+.+++++
T Consensus 229 ~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~ 308 (368)
T 3mmy_A 229 TGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKL 308 (368)
T ss_dssp EEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred CeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEE
Confidence 339999999999999987654 23344556655 7999999999999999999999999999999999
Q ss_pred EEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceE
Q 012799 396 AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLK 454 (456)
Q Consensus 396 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~ 454 (456)
..+.+|..+|.++ +|+|+|++|++|+.|+..+
T Consensus 309 ~~~~~~~~~v~~~---------------------------~~s~~g~~l~~~s~d~~~~ 340 (368)
T 3mmy_A 309 KTSEQLDQPISAC---------------------------CFNHNGNIFAYASSYDWSK 340 (368)
T ss_dssp EECCCCSSCEEEE---------------------------EECTTSSCEEEEECCCSTT
T ss_pred EEecCCCCCceEE---------------------------EECCCCCeEEEEecccccc
Confidence 9999999999999 9999999999999998654
No 60
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.1e-40 Score=309.75 Aligned_cols=306 Identities=12% Similarity=0.214 Sum_probs=238.4
Q ss_pred CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc-----------ceeEEecCC------------CCEEEEEEcCCC
Q 012799 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-----------PMFKCTGHK------------NWVLCIAWSADG 162 (456)
Q Consensus 106 ~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~ 162 (456)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 478999999999999999999999999999998876 477888998 889999999998
Q ss_pred --CEEEEEeCCCeEEEEeCCCCCCc---------------------------------------cccccCcccceEEEEe
Q 012799 163 --KHLVSGSKAGELQCWDPQTGKPS---------------------------------------GNPLSGHKKWITGISW 201 (456)
Q Consensus 163 --~~l~s~~~dg~i~vwd~~~~~~~---------------------------------------~~~~~~~~~~v~~~~~ 201 (456)
.+|++++.|+.|++||+.++... .....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998764321 0124679999999999
Q ss_pred cccccCCCCCEEEEEeCCCcEEEEECCC-CeEEE-------EecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCC
Q 012799 202 EPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVI-------CLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQG 271 (456)
Q Consensus 202 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~-------~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~ 271 (456)
+| ++++|++| .|+.|++||+++ ++.+. .+.+|...|.+++|+|++ .+++|+.||.|++||++++
T Consensus 186 ~~-----~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 186 NS-----DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp CT-----TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred cC-----CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence 99 88999998 799999999984 44444 256899999999999986 8999999999999999998
Q ss_pred eE----EEEeecCCc------------ceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEE
Q 012799 272 KL----IRELKGHGH------------WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (456)
Q Consensus 272 ~~----~~~~~~~~~------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (456)
+. +..+..+.. .|.+++|+|+ +.+++++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------------------------------------g~~l~~~ 303 (447)
T 3dw8_B 260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS------------------------------------GRYMMTR 303 (447)
T ss_dssp SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTT------------------------------------SSEEEEE
T ss_pred ccccceeeEeccCCCccccccccccCceEEEEEECCC------------------------------------CCEEEEe
Confidence 86 677877775 8999999998 5669999
Q ss_pred eCCCcEEEEecCCCCCCcccccccccc---------------EeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799 336 SDDFTMFLWEPAVSKQPKTRMTGHQQL---------------VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG 400 (456)
Q Consensus 336 ~~dg~i~iwd~~~~~~~~~~~~~~~~~---------------v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 400 (456)
+. +.|++||++....+...+.+|... +..++|+|++++|++|+.||.|++||+.+++.+ .+.+
T Consensus 304 ~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~ 381 (447)
T 3dw8_B 304 DY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEA 381 (447)
T ss_dssp ES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEEC
T ss_pred eC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeee
Confidence 98 999999988756666667777542 234999999999999999999999999998876 4454
Q ss_pred ccccEEEEEeee-e--eeec---CCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 401 HVGPVYQIRFEL-I--YCFR---YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 401 ~~~~v~~i~~~~-~--~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
|..+........ . .... .........+....+..++|+|++++||+++.++ +++|
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~ 442 (447)
T 3dw8_B 382 SRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIF 442 (447)
T ss_dssp CSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEE
T ss_pred cccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeee
Confidence 543221100000 0 0000 0000111233455677789999999999998876 6665
No 61
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.4e-39 Score=300.56 Aligned_cols=273 Identities=24% Similarity=0.415 Sum_probs=235.1
Q ss_pred cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe--cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc
Q 012799 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 187 (456)
.++.|+||++ ++||+|. |++|+|||..+++....+. +|...|++++|+|+|++|++|+.||.|++||+++++.+.
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~- 183 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR- 183 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE-
Confidence 4677999976 5787775 8999999999998776654 678889999999999999999999999999999988765
Q ss_pred cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC-eEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEE
Q 012799 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKV 265 (456)
Q Consensus 188 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i 265 (456)
.+.+|...+.++.+++ ..+++|+.|+.+++||.... ..+..+.+|...+..+.+.+++ .+++++.||.+++
T Consensus 184 ~~~~h~~~v~~~s~~~-------~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i 256 (420)
T 4gga_A 184 NMTSHSARVGSLSWNS-------YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 256 (420)
T ss_dssp EECCCSSCEEEEEEET-------TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEeCCCCceEEEeeCC-------CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceE
Confidence 5788999999988854 79999999999999998764 5567788999999999999999 9999999999999
Q ss_pred EECCCCe----EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE--EeCCC
Q 012799 266 WETTQGK----LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS--GSDDF 339 (456)
Q Consensus 266 wd~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~dg 339 (456)
||..+++ .+.....|...|.+++|+|.. ...+++ |+.|+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~-----------------------------------~~~la~~~gs~D~ 301 (420)
T 4gga_A 257 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ-----------------------------------SNVLATGGGTSDR 301 (420)
T ss_dssp EESSCCSSCSCCSEEECCCSSCEEEEEECTTC-----------------------------------TTEEEEEECTTTC
T ss_pred EeeccccccceeeeeecccCCceeeeeeCCCc-----------------------------------ccEEEEEeecCCC
Confidence 9998765 345667788999999999873 344554 46799
Q ss_pred cEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEE--CCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeec
Q 012799 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS--FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR 417 (456)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 417 (456)
.|++||+.++.. ...+. +...+.++.|+|+++.+++++ .||.|+|||+.+++++..+.+|.+.|+++
T Consensus 302 ~I~iwd~~t~~~-~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l--------- 370 (420)
T 4gga_A 302 HIRIWNVCSGAC-LSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSL--------- 370 (420)
T ss_dssp EEEEEETTTTEE-EEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEE---------
T ss_pred EEEEEeCCcccc-ceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEE---------
Confidence 999999876543 33333 345688999999999988765 78999999999999999999999999999
Q ss_pred CCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+|+|||++|+|||.||+|+||
T Consensus 371 ------------------~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 371 ------------------TMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp ------------------EECTTSSCEEEEETTTEEEEE
T ss_pred ------------------EEcCCCCEEEEEecCCeEEEE
Confidence 999999999999999999999
No 62
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1e-40 Score=306.31 Aligned_cols=257 Identities=25% Similarity=0.411 Sum_probs=225.2
Q ss_pred EEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCC
Q 012799 132 VRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR 211 (456)
Q Consensus 132 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 211 (456)
+..|+........++.+|.+.|++++|+|++++|++|+.||+|++||+.+++... .+..|...|.+++|+| +++
T Consensus 48 ~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~-~~~~h~~~v~~~~~s~-----~g~ 121 (380)
T 3iz6_a 48 AVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH-AIKLHCPWVMECAFAP-----NGQ 121 (380)
T ss_dssp CCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE-EEECCCTTCCCCEECT-----TSS
T ss_pred ccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce-EEecCCCCEEEEEECC-----CCC
Confidence 3345656666778899999999999999999999999999999999999887665 5778999999999999 999
Q ss_pred EEEEEeCCCcEEEEECCCCe-------EEEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEe-----
Q 012799 212 RFVSASKDGDARIWDVSLRK-------CVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIREL----- 277 (456)
Q Consensus 212 ~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~----- 277 (456)
++++|+.|+.+++||+.+.. ....+.+|...+.++.|.|++ .|++|+.|++|++||+++++.+..+
T Consensus 122 ~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~ 201 (380)
T 3iz6_a 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFP 201 (380)
T ss_dssp EEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSS
T ss_pred EEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccC
Confidence 99999999999999986532 334567899999999999965 7999999999999999999988877
Q ss_pred ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccc
Q 012799 278 KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT 357 (456)
Q Consensus 278 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 357 (456)
.+|...+.++++++. +++++++|+.|+.|++||++........+.
T Consensus 202 ~~h~~~v~~~~~~~~-----------------------------------~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~ 246 (380)
T 3iz6_a 202 SGHTADVLSLSINSL-----------------------------------NANMFISGSCDTTVRLWDLRITSRAVRTYH 246 (380)
T ss_dssp SSCCSCEEEEEECSS-----------------------------------SCCEEEEEETTSCEEEEETTTTCCCCEEEC
T ss_pred CCCccCeEEEEeecC-----------------------------------CCCEEEEEECCCeEEEEECCCCCcceEEEC
Confidence 568888999999763 256799999999999999987767777888
Q ss_pred cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccc-------cEEEEEeeeeeeecCCCCceeeecccc
Q 012799 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG-------PVYQIRFELIYCFRYPSNFYCVVDMSC 430 (456)
Q Consensus 358 ~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~i~~~~~~~~~~~~~~~~~~~~~~ 430 (456)
+|...|++++|+|++++|++|+.||+|++||+++++.+..+..+.. .|.++
T Consensus 247 ~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~---------------------- 304 (380)
T 3iz6_a 247 GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSV---------------------- 304 (380)
T ss_dssp CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEE----------------------
T ss_pred CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEE----------------------
Confidence 9999999999999999999999999999999999999888765432 24555
Q ss_pred cccceeEecCCCeEEEeeCCCceEEC
Q 012799 431 CMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 431 ~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+|+|+|++|++|+.||.|+||
T Consensus 305 -----~~s~~g~~l~~g~~dg~i~vw 325 (380)
T 3iz6_a 305 -----AFSISGRLLFAGYSNGDCYVW 325 (380)
T ss_dssp -----EECSSSSEEEEECTTSCEEEE
T ss_pred -----EECCCCCEEEEEECCCCEEEE
Confidence 999999999999999999998
No 63
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.1e-38 Score=301.42 Aligned_cols=291 Identities=25% Similarity=0.415 Sum_probs=250.9
Q ss_pred cceEEEee--cccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEc--CCCCE
Q 012799 89 QAVFRIRP--VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS--ADGKH 164 (456)
Q Consensus 89 ~~~~~~~~--~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~ 164 (456)
+..+++|. .+++..++.+|.+.|.+++|+|++ +|++|+.||+|++||+.+++.+..+.+|...|.+++|+ +++++
T Consensus 141 dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 219 (464)
T 3v7d_B 141 DKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY 219 (464)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEE
T ss_pred CCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCE
Confidence 33455664 345678889999999999999988 89999999999999999999999999999999999999 57899
Q ss_pred EEEEeCCCeEEEEeCCCCCCcc----------------------ccccCcccceEEEEecccccCCCCCEEEEEeCCCcE
Q 012799 165 LVSGSKAGELQCWDPQTGKPSG----------------------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222 (456)
Q Consensus 165 l~s~~~dg~i~vwd~~~~~~~~----------------------~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i 222 (456)
+++|+.||.|++||+.++.... ....+|...+.++. + +++++++++.||.|
T Consensus 220 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~-----~~~~l~~~~~d~~i 292 (464)
T 3v7d_B 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G-----HGNIVVSGSYDNTL 292 (464)
T ss_dssp EEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E-----ETTEEEEEETTSCE
T ss_pred EEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--C-----CCCEEEEEeCCCeE
Confidence 9999999999999998876431 23566777787774 3 66899999999999
Q ss_pred EEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeecccc
Q 012799 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301 (456)
Q Consensus 223 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 301 (456)
++||+++++++..+.+|...|.+++|+|++ .+++|+.||.|++||+++++.+..+.+|...|.++.+++.
T Consensus 293 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~--------- 363 (464)
T 3v7d_B 293 IVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK--------- 363 (464)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSS---------
T ss_pred EEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCC---------
Confidence 999999999999999999999999999998 9999999999999999999999999999999999998743
Q ss_pred CCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECC
Q 012799 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381 (456)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d 381 (456)
++++++.||.|++||+........ ..|...+..++|+|++++|++|+ |
T Consensus 364 -----------------------------~l~s~s~dg~v~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~-d 411 (464)
T 3v7d_B 364 -----------------------------FLVSAAADGSIRGWDANDYSRKFS--YHHTNLSAITTFYVSDNILVSGS-E 411 (464)
T ss_dssp -----------------------------EEEEEETTSEEEEEETTTCCEEEE--EECTTCCCEEEEEECSSEEEEEE-T
T ss_pred -----------------------------EEEEEeCCCcEEEEECCCCceeee--ecCCCCccEEEEEeCCCEEEEec-C
Confidence 599999999999999876543222 24566788899999999999998 9
Q ss_pred CcEEEEeCCCCeEEEE-EecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 382 KSIKLWNGTTGKFVAV-FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 382 g~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
|.|++||+.+++++.. +..|...|.++ +|+ ++.++++++.||.+.+|
T Consensus 412 g~i~iwd~~~g~~~~~~~~~~~~~v~~v---------------------------~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 412 NQFNIYNLRSGKLVHANILKDADQIWSV---------------------------NFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp TEEEEEETTTCCEEESCTTTTCSEEEEE---------------------------EEE-TTEEEEEEEETTEEEEE
T ss_pred CeEEEEECCCCcEEehhhccCCCcEEEE---------------------------Eec-CCEEEEEEEeCCeEEEE
Confidence 9999999999999885 66889999999 777 44566667778877765
No 64
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-40 Score=315.11 Aligned_cols=281 Identities=11% Similarity=0.064 Sum_probs=221.9
Q ss_pred ccccCCcccEEEEEECCC------CCeEEEEECCCcEEEEeCCCCcc-----------eeEEecCCCCEEEEEEcCCCCE
Q 012799 102 ATIAGHTEAVLSVAFSPD------GRQLASGSGDTTVRLWDLNTQTP-----------MFKCTGHKNWVLCIAWSADGKH 164 (456)
Q Consensus 102 ~~l~~h~~~V~~~~~s~~------~~~l~~~~~d~~v~vwd~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~ 164 (456)
.++.+|.+.|.+++|+|+ +.+||+++.||+|++||+.++.. ...+.+|...|++++|++++ .
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~ 279 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-T 279 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-E
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-e
Confidence 346788999999999997 57999999999999999986642 24678899999999999864 8
Q ss_pred EEEEeCCCeEEEEeCCCCCCccccccCcccceEEE--EecccccCCCC-CEEEEEeCCCcEEEEECCCCeEEEEecCcCc
Q 012799 165 LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI--SWEPVHLNAPC-RRFVSASKDGDARIWDVSLRKCVICLSGHTL 241 (456)
Q Consensus 165 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 241 (456)
|++|+.||+|++||++++......+.+|...|.++ .|+| ++ .+|++++.|++|++||++++++...+.+|..
T Consensus 280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-----~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~ 354 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-----FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR 354 (524)
T ss_dssp EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-----TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECS
T ss_pred EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-----CCCeEEEEeccCCeEEEEECCCCCcccccccccc
Confidence 99999999999999998755444578899999999 5666 76 7999999999999999998877666666643
Q ss_pred --cEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHH
Q 012799 242 --AVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (456)
Q Consensus 242 --~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (456)
.|.+++|+|++ .+++++.|++|++||++++..+..+.+|...|.+++|+|+
T Consensus 355 ~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~-------------------------- 408 (524)
T 2j04_B 355 GSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRL-------------------------- 408 (524)
T ss_dssp CCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSS--------------------------
T ss_pred cCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCC--------------------------
Confidence 57899999988 8899999999999999999888888899999999999998
Q ss_pred hhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccccc-----ccccEeEEEECCCCCEEEEEECCCcEEEEeCC-CC
Q 012799 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-----HQQLVNHVYFSPDGQWVASASFDKSIKLWNGT-TG 392 (456)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~-~~ 392 (456)
+..|++|+.|++|++||+... ....... +...+.+++|+|+++.+. .. | .+++|+.. ++
T Consensus 409 ----------g~~l~Sgs~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~-~-~~~~~~~~~~g 473 (524)
T 2j04_B 409 ----------HPMVLAGSADGSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-ID-S-SYEVYPLTVND 473 (524)
T ss_dssp ----------CCBCEEEETTTEEECCBSCSS--TTTCC------CCCCEEEECBCCSSSCEEE-EC-C-CCCCCC-----
T ss_pred ----------CCeEEEEECCCEEEEEechHh--hccccccCccceeeeEEEEeccCCCCCeEE-cc-C-CceecccccCC
Confidence 556999999999999997542 2221111 112578999999998553 22 2 34455443 57
Q ss_pred eEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCC---eEEEeeCCCceEEC
Q 012799 393 KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR---LLLSGSKDSTLKVT 456 (456)
Q Consensus 393 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~---~l~s~s~Dg~v~iW 456 (456)
..+..+.+|...|+++ +|+|+++ +||+|+.||.||||
T Consensus 474 ~~~~~l~gh~~~V~~V---------------------------afsp~~~~~~~lAsg~~~g~vrlw 513 (524)
T 2j04_B 474 VSKAKIDAHGINITCT---------------------------KWNETSAGGKCYAFSNSAGLLTLE 513 (524)
T ss_dssp --------CCCSCCCE---------------------------EECCSTTTTTEEEEECTTSEEEEE
T ss_pred cceeeecCCCceEEEE---------------------------ECCCCCCccHHHHhhccCceEEEE
Confidence 7888899999999999 9999964 99999999999998
No 65
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=9.8e-39 Score=289.13 Aligned_cols=254 Identities=20% Similarity=0.354 Sum_probs=210.8
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 179 (456)
+...+.+|...|.+++|+|++.++++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus 68 ~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~ 147 (343)
T 2xzm_R 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147 (343)
T ss_dssp EEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred ccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcc-ccccCcccceEEEEeccccc-----CCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-
Q 012799 180 QTGKPSG-NPLSGHKKWITGISWEPVHL-----NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG- 252 (456)
Q Consensus 180 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~- 252 (456)
....... .....|...|.+++|+|... .+.+.++++++.||.|++|| ...+....+.+|...|.+++|+|++
T Consensus 148 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~ 226 (343)
T 2xzm_R 148 LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGK 226 (343)
T ss_dssp SSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred cCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCC
Confidence 7432211 12347888999999998321 11237899999999999999 4567777888999999999999999
Q ss_pred eEEEEeCCCcEEEEECCC-CeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCE
Q 012799 253 VIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331 (456)
Q Consensus 253 ~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (456)
+|++|+.||.|++||+.. ......+. +...|.+++|+|+ +.+
T Consensus 227 ~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~------------------------------------~~~ 269 (343)
T 2xzm_R 227 YIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPK------------------------------------LQW 269 (343)
T ss_dssp EEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSS------------------------------------SCE
T ss_pred EEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCC------------------------------------CCE
Confidence 999999999999999954 33334443 4567999999997 333
Q ss_pred EEEEeCCCcEEEEecCCCCCCc-ccc-----------ccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCC
Q 012799 332 LVSGSDDFTMFLWEPAVSKQPK-TRM-----------TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG 392 (456)
Q Consensus 332 l~~~~~dg~i~iwd~~~~~~~~-~~~-----------~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 392 (456)
++ ++.|+.|++||+....... ..+ .+|...|.+++|+|+|++|++|+.||.|++|++.++
T Consensus 270 la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 270 VA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 54 5568889999987654321 111 268888999999999999999999999999998654
No 66
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-38 Score=301.00 Aligned_cols=281 Identities=25% Similarity=0.427 Sum_probs=244.9
Q ss_pred ccccccCCcccE-EEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 012799 100 CSATIAGHTEAV-LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (456)
Q Consensus 100 ~~~~l~~h~~~V-~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 178 (456)
...++.+|.+.| .++.+ ++++|++|+.||+|++||+.+++.+..+.+|.+.|.+++|+|++ +|++|+.||+|++||
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd 189 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD 189 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence 345788999885 66666 57799999999999999999999999999999999999999988 999999999999999
Q ss_pred CCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe-----------------------EEEE
Q 012799 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-----------------------CVIC 235 (456)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------------~~~~ 235 (456)
+++++... .+.+|...|.+++|.+.. ++.++++++.||.|++||++++. .+..
T Consensus 190 ~~~~~~~~-~~~~h~~~v~~l~~~~~~---~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
T 3v7d_B 190 IKKGCCTH-VFEGHNSTVRCLDIVEYK---NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265 (464)
T ss_dssp TTTTEEEE-EECCCSSCEEEEEEEESS---SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred CCCCcEEE-EECCCCCccEEEEEecCC---CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence 99988665 577899999999998632 77899999999999999998765 2556
Q ss_pred ecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHH
Q 012799 236 LSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK 315 (456)
Q Consensus 236 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (456)
+.+|...+.++...++ .+++++.||.|++||+++++.+..+.+|...|.+++++|+
T Consensus 266 ~~~~~~~v~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----------------------- 321 (464)
T 3v7d_B 266 LRGHMASVRTVSGHGN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE----------------------- 321 (464)
T ss_dssp ECCCSSCEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-----------------------
T ss_pred ccCccceEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCC-----------------------
Confidence 7788899988854422 9999999999999999999999999999999999999998
Q ss_pred HHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEE
Q 012799 316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395 (456)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~ 395 (456)
+.++++|+.||.|++||++++ .....+.+|...|.+++|+ +++|++|+.||.|++||+.+++..
T Consensus 322 -------------~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~ 385 (464)
T 3v7d_B 322 -------------RKRCISASMDTTIRIWDLENG-ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK 385 (464)
T ss_dssp -------------TTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred -------------CCEEEEEeCCCcEEEEECCCC-cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCcee
Confidence 567999999999999998765 4566678999999999997 579999999999999999998876
Q ss_pred EEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 396 AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 396 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.... |...+..+ +|++++++|++|+ ||.|+||
T Consensus 386 ~~~~-~~~~~~~~---------------------------~~~~~~~~l~~~~-dg~i~iw 417 (464)
T 3v7d_B 386 FSYH-HTNLSAIT---------------------------TFYVSDNILVSGS-ENQFNIY 417 (464)
T ss_dssp EEEE-CTTCCCEE---------------------------EEEECSSEEEEEE-TTEEEEE
T ss_pred eeec-CCCCccEE---------------------------EEEeCCCEEEEec-CCeEEEE
Confidence 6554 55566666 8899999999999 9999998
No 67
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=7.6e-39 Score=295.24 Aligned_cols=239 Identities=28% Similarity=0.466 Sum_probs=211.0
Q ss_pred cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccc
Q 012799 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL 189 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 189 (456)
.|++++|+|+|++||+|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+++++... .
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~--~ 202 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL--T 202 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--E
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEE--E
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999887653 2
Q ss_pred cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe-------cCcCccEEEEEeCCCC-eEEEEeCCC
Q 012799 190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-------SGHTLAVTCVKWGGDG-VIYTGSQDC 261 (456)
Q Consensus 190 ~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~-~l~~~~~dg 261 (456)
..+...+.+++|+|. ++.++++|+.||.|++||+++++.+..+ .+|...|.+++|+|++ .|++++.||
T Consensus 203 ~~~~~~v~~~~~~~~----~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~ 278 (393)
T 1erj_A 203 LSIEDGVTTVAVSPG----DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 278 (393)
T ss_dssp EECSSCEEEEEECST----TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEcCCCcEEEEEECC----CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 335677999999873 6789999999999999999998887766 5789999999999999 899999999
Q ss_pred cEEEEECCCC------------eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCC
Q 012799 262 TIKVWETTQG------------KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (456)
Q Consensus 262 ~i~iwd~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (456)
.|++||+++. .+...+.+|...|.+++++++ +
T Consensus 279 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------------------------------------~ 322 (393)
T 1erj_A 279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN------------------------------------D 322 (393)
T ss_dssp EEEEEEC---------------CEEEEEECCSSCEEEEEECGG------------------------------------G
T ss_pred EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCC------------------------------------C
Confidence 9999999763 345567789999999999988 5
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECC------CCCEEEEEECCCcEEEEeCCC
Q 012799 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP------DGQWVASASFDKSIKLWNGTT 391 (456)
Q Consensus 330 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp------~~~~l~s~~~dg~i~iwd~~~ 391 (456)
.++++|+.|+.|++||+..+. ....+.+|...|.+++|++ ++++|++|+.||.|++|++..
T Consensus 323 ~~l~sgs~D~~v~iwd~~~~~-~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 323 EYILSGSKDRGVLFWDKKSGN-PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp CEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCe-EEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 569999999999999976654 5566789999999999986 688999999999999999754
No 68
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.8e-39 Score=301.68 Aligned_cols=269 Identities=29% Similarity=0.534 Sum_probs=241.9
Q ss_pred cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 012799 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP 184 (456)
Q Consensus 105 ~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 184 (456)
.+|...|.++++ ++++|++|+.||.|++||+.+++....+.+|...|.+++| ++++|++|+.||.|++||+.+++.
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence 467788999887 7899999999999999999999999999999999999999 788999999999999999999887
Q ss_pred ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEE---EEecCcCccEEEEEeCCCCeEEEEeCCC
Q 012799 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV---ICLSGHTLAVTCVKWGGDGVIYTGSQDC 261 (456)
Q Consensus 185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~l~~~~~dg 261 (456)
.. .+.+|...|.+++|++ ..+++|+.||.|++||+++++.. ..+.+|...|.++++. ...+++|+.||
T Consensus 206 ~~-~~~~h~~~v~~l~~~~-------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg 276 (435)
T 1p22_A 206 LN-TLIHHCEAVLHLRFNN-------GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD-DKYIVSASGDR 276 (435)
T ss_dssp EE-EECCCCSCEEEEECCT-------TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE-TTEEEEEETTS
T ss_pred EE-EEcCCCCcEEEEEEcC-------CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC-CCEEEEEeCCC
Confidence 65 5678999999999965 59999999999999999887654 6678899999999993 23999999999
Q ss_pred cEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcE
Q 012799 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341 (456)
Q Consensus 262 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 341 (456)
.|++||+++++.+..+..|...+.++.++ +.++++|+.||.|
T Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--------------------------------------~~~l~~g~~dg~i 318 (435)
T 1p22_A 277 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--------------------------------------DRLVVSGSSDNTI 318 (435)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEEE--------------------------------------TTEEEEEETTSCE
T ss_pred eEEEEECCcCcEEEEEcCCCCcEEEEEeC--------------------------------------CCEEEEEeCCCeE
Confidence 99999999999999999999999999885 3459999999999
Q ss_pred EEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCe---------EEEEEecccccEEEEEeee
Q 012799 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK---------FVAVFRGHVGPVYQIRFEL 412 (456)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~i~~~~ 412 (456)
++||++++ .....+.+|...|.+++| ++++|++|+.||.|++||+.+++ .+..+.+|.+.|.++
T Consensus 319 ~iwd~~~~-~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l---- 391 (435)
T 1p22_A 319 RLWDIECG-ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL---- 391 (435)
T ss_dssp EEEETTTC-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE----
T ss_pred EEEECCCC-CEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEE----
Confidence 99998765 456667889999999999 78899999999999999987766 788899999999988
Q ss_pred eeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+| ++++|++|+.||+|+||
T Consensus 392 -----------------------~~--~~~~l~s~s~Dg~i~iw 410 (435)
T 1p22_A 392 -----------------------QF--DEFQIVSSSHDDTILIW 410 (435)
T ss_dssp -----------------------EE--CSSCEEECCSSSEEEEE
T ss_pred -----------------------Ee--CCCEEEEEeCCCEEEEE
Confidence 77 78999999999999998
No 69
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.9e-39 Score=285.53 Aligned_cols=260 Identities=19% Similarity=0.310 Sum_probs=210.9
Q ss_pred eEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC-CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcE
Q 012799 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK-PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222 (456)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i 222 (456)
..+.+|...|.+++|+|+|++|++|+.|++|++||+..+. .....+.+|...|.+++|++.. ++++|++|+.|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~---~g~~l~s~s~D~~v 79 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK---FGTILASCSYDGKV 79 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG---GCSEEEEEETTTEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC---cCCEEEEEcCCCEE
Confidence 4567899999999999999999999999999999997542 2233678999999999997621 37899999999999
Q ss_pred EEEECCCCe--EEEEecCcCccEEEEEeCCC--C-eEEEEeCCCcEEEEECCCCe--EEEEeecCCcceEEEEecCccee
Q 012799 223 RIWDVSLRK--CVICLSGHTLAVTCVKWGGD--G-VIYTGSQDCTIKVWETTQGK--LIRELKGHGHWVNSLALSTEYAL 295 (456)
Q Consensus 223 ~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~ 295 (456)
++||+++++ .+..+.+|...|.+++|+|+ + .|++++.||.|++||++++. ....+.+|...|.+++|+|+...
T Consensus 80 ~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 159 (297)
T ss_dssp EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--
T ss_pred EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccc
Confidence 999998774 56677889999999999997 6 89999999999999998763 24566789999999999987421
Q ss_pred eeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC---CccccccccccEeEEEECCCC
Q 012799 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ---PKTRMTGHQQLVNHVYFSPDG 372 (456)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~sp~~ 372 (456)
.... ......+.+|++|+.|+.|++||++.... ....+.+|...|.+++|+|++
T Consensus 160 ~~~~-----------------------~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~ 216 (297)
T 2pm7_B 160 EDGE-----------------------HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 216 (297)
T ss_dssp ---------------------------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC
T ss_pred cccc-----------------------CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCC
Confidence 1000 00011356899999999999999876543 344678999999999999984
Q ss_pred ---CEEEEEECCCcEEEEeCCCCe---EEEEE--ecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeE
Q 012799 373 ---QWVASASFDKSIKLWNGTTGK---FVAVF--RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL 444 (456)
Q Consensus 373 ---~~l~s~~~dg~i~iwd~~~~~---~~~~~--~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 444 (456)
++|++|+.||+|++||+.++. ....+ ..|...|.++ +|+|+|++|
T Consensus 217 ~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~---------------------------~~s~~g~~l 269 (297)
T 2pm7_B 217 LLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA---------------------------SWSLSGNVL 269 (297)
T ss_dssp SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEE---------------------------EECSSSCCE
T ss_pred CCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEE---------------------------EECCCCCEE
Confidence 899999999999999987743 12233 4677889998 999999999
Q ss_pred EEeeCCCceEEC
Q 012799 445 LSGSKDSTLKVT 456 (456)
Q Consensus 445 ~s~s~Dg~v~iW 456 (456)
++++.||+|+||
T Consensus 270 as~~~D~~v~lw 281 (297)
T 2pm7_B 270 ALSGGDNKVTLW 281 (297)
T ss_dssp EEEETTSCEEEE
T ss_pred EEEcCCCcEEEE
Confidence 999999999999
No 70
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=285.38 Aligned_cols=274 Identities=23% Similarity=0.387 Sum_probs=231.7
Q ss_pred EEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe--cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (456)
Q Consensus 111 V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 188 (456)
.++|+||+++ +||+| .|++|+|||+.+++.+..+. +|...|++++|+|++++|++|+.||+|++||+++++.+. .
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~-~ 104 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR-N 104 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-E
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE-E
Confidence 5679999986 77776 48999999999999887664 678889999999999999999999999999999998765 5
Q ss_pred ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC-eEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEE
Q 012799 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW 266 (456)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iw 266 (456)
..+|...+.++.+. +..+++++.++.+++|+.... ..+..+.+|...+.++.+.+++ .+++++.||.|++|
T Consensus 105 ~~~h~~~~~~~~~~-------~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 177 (318)
T 4ggc_A 105 MTSHSARVGSLSWN-------SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177 (318)
T ss_dssp EECCSSCEEEEEEE-------TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ecCccceEEEeecC-------CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEE
Confidence 77888888877664 479999999999999998765 4566778999999999999998 99999999999999
Q ss_pred ECCCCeE----EEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEE
Q 012799 267 ETTQGKL----IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF 342 (456)
Q Consensus 267 d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 342 (456)
|+++++. ......+...+..+.+.+.... .-.+++++.++.|+
T Consensus 178 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------------------------------~~~~~~~~~~~~i~ 224 (318)
T 4ggc_A 178 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN---------------------------------VLATGGGTSDRHIR 224 (318)
T ss_dssp ESSCBTTBSCCSEEECCCCSCEEEEEECTTSTT---------------------------------EEEEEECTTTCEEE
T ss_pred ECCCCcccccceeeecccCCceEEEEecCCCCc---------------------------------EEEEEecCCCCEEE
Confidence 9987653 3444557778899988876311 01245677899999
Q ss_pred EEecCCCCCCccccccccccEeEEEECCCCCEEEEEE--CCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCC
Q 012799 343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS--FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPS 420 (456)
Q Consensus 343 iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~ 420 (456)
+||....... ....+...+..+.|+|+++.+++++ .||.|++||+.+++++..+.+|.+.|+++
T Consensus 225 lwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l------------ 290 (318)
T 4ggc_A 225 IWNVCSGACL--SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSL------------ 290 (318)
T ss_dssp EEETTTCCEE--EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEE------------
T ss_pred EEeccccccc--ccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEE------------
Confidence 9997655432 3345667799999999999877655 79999999999999999999999999999
Q ss_pred CceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 421 NFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 421 ~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+|+|||++|+|||.||+|+||
T Consensus 291 ---------------~~spdg~~l~S~s~D~~v~iW 311 (318)
T 4ggc_A 291 ---------------TMSPDGATVASAAADETLRLW 311 (318)
T ss_dssp ---------------EECTTSSCEEEEETTTEEEEE
T ss_pred ---------------EEcCCCCEEEEEecCCeEEEE
Confidence 999999999999999999999
No 71
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=9e-39 Score=285.72 Aligned_cols=249 Identities=30% Similarity=0.548 Sum_probs=223.5
Q ss_pred cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC
Q 012799 141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG 220 (456)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg 220 (456)
.....+.+|...|++++|+|++++|++++.||.|++|++.+++... .+.+|...|.+++|+| ++++|++++.|+
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~-~~~~h~~~v~~~~~~~-----~~~~l~s~~~d~ 87 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-TISGHKLGISDVAWSS-----DSNLLVSASDDK 87 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEEECT-----TSSEEEEEETTS
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch-hhccCCCceEEEEEcC-----CCCEEEEECCCC
Confidence 4456778999999999999999999999999999999999887654 5778999999999999 899999999999
Q ss_pred cEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeecc
Q 012799 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299 (456)
Q Consensus 221 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 299 (456)
.|++||+++++++..+.+|...|.+++|+|++ .+++++.||.|++||+++++.+..+..|..++.+++++|+
T Consensus 88 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~------- 160 (312)
T 4ery_A 88 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD------- 160 (312)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-------
T ss_pred EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCC-------
Confidence 99999999999999999999999999999998 9999999999999999999999999999999999999998
Q ss_pred ccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEE
Q 012799 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379 (456)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 379 (456)
+.++++++.|+.|++||++...........+...+..++|+|++++|++++
T Consensus 161 -----------------------------~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 211 (312)
T 4ery_A 161 -----------------------------GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 211 (312)
T ss_dssp -----------------------------SSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE
T ss_pred -----------------------------CCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc
Confidence 566999999999999998876654444556778899999999999999999
Q ss_pred CCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeE-ecCCCeEEEeeCCCceEEC
Q 012799 380 FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW-SADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 380 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~s~s~Dg~v~iW 456 (456)
.||.|++||+.+++.+..+.+|......+.. .| .+++++|++|+.||.|++|
T Consensus 212 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~l~sg~~dg~i~vw 264 (312)
T 4ery_A 212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA-------------------------NFSVTGGKWIVSGSEDNLVYIW 264 (312)
T ss_dssp TTTEEEEEETTTTEEEEEECSSCCSSSCCCE-------------------------EEECSSSCEEEECCTTSCEEEE
T ss_pred CCCeEEEEECCCCcEEEEEEecCCceEEEEE-------------------------EEEeCCCcEEEEECCCCEEEEE
Confidence 9999999999999999999888765433311 33 4678999999999999998
No 72
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.9e-39 Score=338.03 Aligned_cols=311 Identities=23% Similarity=0.367 Sum_probs=271.5
Q ss_pred CcccEEEEEEeccc----------eEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCccee
Q 012799 77 SVEKVLSIVYQPQA----------VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF 144 (456)
Q Consensus 77 ~~~~~~~~~~~~~~----------~~~~~~~--~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~ 144 (456)
+...+..+.|+|+. .+++|.. +.+..++.+|.+.|.+++|+|++++||+|+.||+|++||+.+++.+.
T Consensus 614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~ 693 (1249)
T 3sfz_A 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVH 693 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred ccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEE
Confidence 56778888888865 3445543 45678899999999999999999999999999999999999999999
Q ss_pred EEecCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcE
Q 012799 145 KCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222 (456)
Q Consensus 145 ~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i 222 (456)
.+.+|...|.+++|+| ++.++++|+.||.|++||+.+++... .+.+|...|.+++|+| +++.+++++.||.|
T Consensus 694 ~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~-~~~~h~~~v~~~~~sp-----~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 694 TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN-TMFGHTNSVNHCRFSP-----DDELLASCSADGTL 767 (1249)
T ss_dssp EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE-EECCCSSCEEEEEECS-----STTEEEEEESSSEE
T ss_pred EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh-eecCCCCCEEEEEEec-----CCCEEEEEECCCeE
Confidence 9999999999999999 56689999999999999999988665 5778999999999999 89999999999999
Q ss_pred EEEECCCCeEEEEe-------------------------------------------------------cCcCccEEEEE
Q 012799 223 RIWDVSLRKCVICL-------------------------------------------------------SGHTLAVTCVK 247 (456)
Q Consensus 223 ~iwd~~~~~~~~~~-------------------------------------------------------~~~~~~v~~~~ 247 (456)
++||+.+++....+ .+|...|.+++
T Consensus 768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~ 847 (1249)
T 3sfz_A 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD 847 (1249)
T ss_dssp EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEE
T ss_pred EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEE
Confidence 99999876544332 15678899999
Q ss_pred eCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccC
Q 012799 248 WGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326 (456)
Q Consensus 248 ~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (456)
|+|++ .+++++.||.|++||+.++..+..+.+|...|.+++|+|+
T Consensus 848 ~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spd---------------------------------- 893 (1249)
T 3sfz_A 848 FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPD---------------------------------- 893 (1249)
T ss_dssp ECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTT----------------------------------
T ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCC----------------------------------
Confidence 99999 9999999999999999999999999999999999999998
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCC------------------------------------ccccccccccEeEEEECC
Q 012799 327 NAPERLVSGSDDFTMFLWEPAVSKQP------------------------------------KTRMTGHQQLVNHVYFSP 370 (456)
Q Consensus 327 ~~~~~l~~~~~dg~i~iwd~~~~~~~------------------------------------~~~~~~~~~~v~~~~~sp 370 (456)
+..+++++.|+.|++||+...... ......+...+.+++|+|
T Consensus 894 --g~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 971 (1249)
T 3sfz_A 894 --GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP 971 (1249)
T ss_dssp --SSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECT
T ss_pred --CCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcC
Confidence 566999999999999996431100 000112345799999999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCC
Q 012799 371 DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD 450 (456)
Q Consensus 371 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~D 450 (456)
+++++++|+.||.|++||+.+++.+..+.+|...|.++ +|+|+|++|++++.|
T Consensus 972 ~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l---------------------------~~s~dg~~l~s~~~d 1024 (1249)
T 3sfz_A 972 HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHI---------------------------QFTADGKTLISSSED 1024 (1249)
T ss_dssp TSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCE---------------------------EECSSSSCEEEECSS
T ss_pred CCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEE---------------------------EECCCCCEEEEEcCC
Confidence 99999999999999999999999999999999999999 899999999999999
Q ss_pred CceEEC
Q 012799 451 STLKVT 456 (456)
Q Consensus 451 g~v~iW 456 (456)
|.|++|
T Consensus 1025 g~i~vw 1030 (1249)
T 3sfz_A 1025 SVIQVW 1030 (1249)
T ss_dssp SBEEEE
T ss_pred CEEEEE
Confidence 999998
No 73
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6.4e-38 Score=294.41 Aligned_cols=286 Identities=30% Similarity=0.528 Sum_probs=252.4
Q ss_pred ceEEEee--cccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEE
Q 012799 90 AVFRIRP--VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVS 167 (456)
Q Consensus 90 ~~~~~~~--~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 167 (456)
..+++|. .+++..++.+|.+.|.+++|+ ++++++|+.||+|++||+.+++.+..+.+|...|.+++|+ ++.+++
T Consensus 139 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s 214 (445)
T 2ovr_B 139 NTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVS 214 (445)
T ss_dssp SCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEE
T ss_pred CcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEE
Confidence 3445554 356778899999999999997 5699999999999999999999999999999999999995 568999
Q ss_pred EeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEE
Q 012799 168 GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVK 247 (456)
Q Consensus 168 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 247 (456)
|+.||.|++||+.+++... .+.+|...|.++.| ++..+++|+.||.|++||+++++++..+.+|...|.+++
T Consensus 215 ~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 286 (445)
T 2ovr_B 215 GSRDATLRVWDIETGQCLH-VLMGHVAAVRCVQY-------DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 286 (445)
T ss_dssp EETTSEEEEEESSSCCEEE-EEECCSSCEEEEEE-------CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE
T ss_pred EeCCCEEEEEECCCCcEEE-EEcCCcccEEEEEE-------CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEE
Confidence 9999999999999988765 56789999999998 457899999999999999999999999999999999999
Q ss_pred eCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCC
Q 012799 248 WGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327 (456)
Q Consensus 248 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (456)
++ ...+++++.||.|++||+++++.+..+..|...+.++.+++
T Consensus 287 ~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~------------------------------------ 329 (445)
T 2ovr_B 287 FD-GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD------------------------------------ 329 (445)
T ss_dssp EC-SSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET------------------------------------
T ss_pred EC-CCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeC------------------------------------
Confidence 93 23999999999999999999999999999999888888753
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCCcccccc---ccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEE-----e
Q 012799 328 APERLVSGSDDFTMFLWEPAVSKQPKTRMTG---HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF-----R 399 (456)
Q Consensus 328 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~ 399 (456)
+++++++.||.|++||++... ....+.. |...|++++|+ +++|++|+.||.|++||+.+++.+..+ .
T Consensus 330 --~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 404 (445)
T 2ovr_B 330 --NILVSGNADSTVKIWDIKTGQ-CLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 404 (445)
T ss_dssp --TEEEEEETTSCEEEEETTTCC-EEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTG
T ss_pred --CEEEEEeCCCeEEEEECCCCc-EEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccC
Confidence 459999999999999987654 3444443 88899999995 679999999999999999999999888 4
Q ss_pred cccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCc----eEEC
Q 012799 400 GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDST----LKVT 456 (456)
Q Consensus 400 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~----v~iW 456 (456)
+|.+.|+++ +|+|++.+|++|+.||+ |.||
T Consensus 405 ~~~~~v~~~---------------------------~~s~~~~~la~~~~dg~~~~~l~v~ 438 (445)
T 2ovr_B 405 GSGGVVWRI---------------------------RASNTKLVCAVGSRNGTEETKLLVL 438 (445)
T ss_dssp GGTCEEEEE---------------------------EECSSEEEEEEECSSSSSCCEEEEE
T ss_pred CCCceEEEE---------------------------EecCCEEEEEEcccCCCCccEEEEE
Confidence 788899999 89999999999999998 8876
No 74
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7.4e-38 Score=294.01 Aligned_cols=275 Identities=27% Similarity=0.525 Sum_probs=244.6
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 179 (456)
..+.+.+|.+.|.. ++++++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+ ++++++|+.||.|++||+
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~ 186 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNA 186 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEEC
Confidence 34678899987643 355578999999999999999999999999999999999999997 669999999999999999
Q ss_pred CCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeC
Q 012799 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259 (456)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 259 (456)
.+++... .+.+|...|.++.|++ +.+++|+.||.|++||+++++.+..+.+|...|.++++. ...+++++.
T Consensus 187 ~~~~~~~-~~~~h~~~v~~~~~~~-------~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~ 257 (445)
T 2ovr_B 187 ETGECIH-TLYGHTSTVRCMHLHE-------KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD-GRRVVSGAY 257 (445)
T ss_dssp TTTEEEE-EECCCSSCEEEEEEET-------TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC-SSCEEEEET
T ss_pred CcCcEEE-EECCCCCcEEEEEecC-------CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEEC-CCEEEEEcC
Confidence 9987765 5778999999999954 689999999999999999999999999999999999993 238999999
Q ss_pred CCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC
Q 012799 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339 (456)
Q Consensus 260 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 339 (456)
||.|++||+++++.+..+..|...+.++.+. +.++++++.|+
T Consensus 258 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--------------------------------------~~~l~~~~~d~ 299 (445)
T 2ovr_B 258 DFMVKVWDPETETCLHTLQGHTNRVYSLQFD--------------------------------------GIHVVSGSLDT 299 (445)
T ss_dssp TSCEEEEEGGGTEEEEEECCCSSCEEEEEEC--------------------------------------SSEEEEEETTS
T ss_pred CCEEEEEECCCCcEeEEecCCCCceEEEEEC--------------------------------------CCEEEEEeCCC
Confidence 9999999999999999999999999999983 45699999999
Q ss_pred cEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec---ccccEEEEEeeeeeee
Q 012799 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG---HVGPVYQIRFELIYCF 416 (456)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~i~~~~~~~~ 416 (456)
.|++||+++.. ....+.+|...+.++.+ ++++|++|+.||.|++||+.+++.+..+.+ |..+|.++
T Consensus 300 ~i~i~d~~~~~-~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~-------- 368 (445)
T 2ovr_B 300 SIRVWDVETGN-CIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL-------- 368 (445)
T ss_dssp CEEEEETTTCC-EEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEE--------
T ss_pred eEEEEECCCCC-EEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEE--------
Confidence 99999987654 55667789999998887 467999999999999999999999999986 88899998
Q ss_pred cCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 417 RYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+|+ +++|++|+.||.|+||
T Consensus 369 -------------------~~~--~~~l~s~~~dg~v~iw 387 (445)
T 2ovr_B 369 -------------------QFN--KNFVITSSDDGTVKLW 387 (445)
T ss_dssp -------------------EEC--SSEEEEEETTSEEEEE
T ss_pred -------------------EEC--CCEEEEEeCCCeEEEE
Confidence 664 6899999999999998
No 75
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.1e-38 Score=289.65 Aligned_cols=291 Identities=18% Similarity=0.290 Sum_probs=221.1
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCC----cceeEEecCCCCEEEEEEcC--CCCEEEEEeCCCeE
Q 012799 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ----TPMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGEL 174 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i 174 (456)
.+.+.+|.+.|++++|+|++++||+|+.||.|++||+.++ +....+.+|...|.+++|+| ++++|++++.||.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 3456899999999999999999999999999999999876 35566789999999999999 69999999999999
Q ss_pred EEEeCCCCCC--------ccccccCcccceEEEEecccccCCC--CCEEEEEeCCCcEEEEECCCCeEEEEe--------
Q 012799 175 QCWDPQTGKP--------SGNPLSGHKKWITGISWEPVHLNAP--CRRFVSASKDGDARIWDVSLRKCVICL-------- 236 (456)
Q Consensus 175 ~vwd~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~-------- 236 (456)
++||+++++. ....+..|...|.+++|+| + +.++++++.||.|++||+++++.+..+
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 158 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-----AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKV 158 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-----GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEES
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcC-----CCCCcEEEEecCCCcEEEecCCChHHhccccccccccc
Confidence 9999988742 1224668999999999999 6 899999999999999999876543222
Q ss_pred -----cCcCccEEEEEeCCC---C-eEEEEeCCCcEEEEECCCCeE--EEEeecCCcceEEEEecCcceeeeccccCCCC
Q 012799 237 -----SGHTLAVTCVKWGGD---G-VIYTGSQDCTIKVWETTQGKL--IRELKGHGHWVNSLALSTEYALRTGAFDHTGK 305 (456)
Q Consensus 237 -----~~~~~~v~~~~~~~~---~-~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 305 (456)
..|...+.+++|+|+ + .+++++.++.+.+|+...++. +..+.+|...|.+++|+|++.-
T Consensus 159 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~---------- 228 (351)
T 3f3f_A 159 LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR---------- 228 (351)
T ss_dssp CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC----------
T ss_pred cccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC----------
Confidence 157788999999996 5 999999999999998887765 6777889999999999998300
Q ss_pred ccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEE----ECC
Q 012799 306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA----SFD 381 (456)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~----~~d 381 (456)
...++++++.||.|++||++....... ...+.........++....++.+ ...
T Consensus 229 ----------------------~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (351)
T 3f3f_A 229 ----------------------WYQLIATGCKDGRIRIFKITEKLSPLA-SEESLTNSNMFDNSADVDMDAQGRSDSNTE 285 (351)
T ss_dssp ----------------------SSEEEEEEETTSCEEEEEEEECC-----------------------------------
T ss_pred ----------------------cceEEEEEcCCCeEEEEeCCCCcCccc-cCCcccceeccCCCcccccccccccccccc
Confidence 015699999999999999876543332 22223333344444444444433 344
Q ss_pred CcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 382 KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 382 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+.+.+|+....+.+..+.+|...|+++ +|+|++++|++|+.||.|+||
T Consensus 286 ~~~~~~~~~~~~~~~~~~~h~~~v~~~---------------------------~~s~~~~~l~s~~~dg~v~iw 333 (351)
T 3f3f_A 286 EKAELQSNLQVELLSEHDDHNGEVWSV---------------------------SWNLTGTILSSAGDDGKVRLW 333 (351)
T ss_dssp -----CCSEEEEEEEEECTTSSCEEEE---------------------------EECSSSCCEEEEETTSCEEEE
T ss_pred eeeeecccccccEEEEEecccccEEEE---------------------------EEcCCCCEEEEecCCCcEEEE
Confidence 567777777788899999999999999 999999999999999999999
No 76
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6e-37 Score=277.35 Aligned_cols=277 Identities=25% Similarity=0.393 Sum_probs=235.9
Q ss_pred cCcccEEEEEEeccc-----------eEEEeecc-------cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeC
Q 012799 76 VSVEKVLSIVYQPQA-----------VFRIRPVN-------RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL 137 (456)
Q Consensus 76 ~~~~~~~~~~~~~~~-----------~~~~~~~~-------~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~ 137 (456)
.|...+..+.|.|+. .+++|... .+.+++.+|...|.+++|+|++++|++|+.|+.|++|+.
T Consensus 36 GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~ 115 (340)
T 4aow_A 36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 115 (340)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEee
Confidence 366778888888752 24555432 245778999999999999999999999999999999999
Q ss_pred CCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEe
Q 012799 138 NTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS 217 (456)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~ 217 (456)
...........+...+..+.+++++++|++++.|+.+++||............+|...+..++|.+.. ....+++++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~s~~ 192 (340)
T 4aow_A 116 TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS---SNPIIVSCG 192 (340)
T ss_dssp TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS---SSCEEEEEE
T ss_pred cccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC---CCcEEEEEc
Confidence 99988888888999999999999999999999999999999987766555677899999999998733 456889999
Q ss_pred CCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceee
Q 012799 218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR 296 (456)
Q Consensus 218 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 296 (456)
.|+.|++||+++++.+..+.+|...|++++|+|++ .|++|+.||.|++||+++.+.+..+.. ...+.++.++|+.
T Consensus 193 ~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~--- 268 (340)
T 4aow_A 193 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNR--- 268 (340)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSS---
T ss_pred CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCC---
Confidence 99999999999999999999999999999999999 999999999999999999999988874 4678999998862
Q ss_pred eccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC--------CccccccccccEeEEEE
Q 012799 297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ--------PKTRMTGHQQLVNHVYF 368 (456)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~v~~~~~ 368 (456)
.+++++.|+.|++||++.... ......+|...|++++|
T Consensus 269 ----------------------------------~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 314 (340)
T 4aow_A 269 ----------------------------------YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAW 314 (340)
T ss_dssp ----------------------------------SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEE
T ss_pred ----------------------------------ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEE
Confidence 367788899999999765421 12234578899999999
Q ss_pred CCCCCEEEEEECCCcEEEEeCCCCe
Q 012799 369 SPDGQWVASASFDKSIKLWNGTTGK 393 (456)
Q Consensus 369 sp~~~~l~s~~~dg~i~iwd~~~~~ 393 (456)
+|+|++|++|+.||.|+|||+.+|+
T Consensus 315 s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 315 SADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 9999999999999999999999885
No 77
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3e-39 Score=288.79 Aligned_cols=263 Identities=20% Similarity=0.271 Sum_probs=207.7
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC-ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEE
Q 012799 145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223 (456)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~ 223 (456)
.+.+|.+.|++++|+|+|++|++|+.|++|++||++++.. ....+.+|...|.+++|++.. ++++|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~---~~~~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM---YGNILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG---GSSCEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC---CCCEEEEEECCCEEE
Confidence 3568999999999999999999999999999999987753 223577999999999997621 378999999999999
Q ss_pred EEECCCC--eEEEEecCcCccEEEEEeCCC--C-eEEEEeCCCcEEEEECCCCeE---EEEeecCCcceEEEEecCccee
Q 012799 224 IWDVSLR--KCVICLSGHTLAVTCVKWGGD--G-VIYTGSQDCTIKVWETTQGKL---IRELKGHGHWVNSLALSTEYAL 295 (456)
Q Consensus 224 iwd~~~~--~~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~~~~~~~ 295 (456)
+||++++ +....+.+|...|.+++|+|+ + .|++|+.||.|++||++.+.. ...+..|...+.+++|+|+...
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 9999887 466778899999999999997 5 899999999999999987632 3445678888999999987321
Q ss_pred eeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC--CCccccccccccEeEEEECCCC-
Q 012799 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK--QPKTRMTGHQQLVNHVYFSPDG- 372 (456)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~sp~~- 372 (456)
.... + .........+.+|++|+.|+.|++||++... .....+.+|...|.+++|+|++
T Consensus 165 ~~~~-~------------------~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~ 225 (316)
T 3bg1_A 165 GSLI-D------------------HPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG 225 (316)
T ss_dssp -------------------------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS
T ss_pred cccc-c------------------cccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC
Confidence 0000 0 0000011124679999999999999986543 2455678999999999999986
Q ss_pred ---CEEEEEECCCcEEEEeCCCC---e-EEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEE
Q 012799 373 ---QWVASASFDKSIKLWNGTTG---K-FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL 445 (456)
Q Consensus 373 ---~~l~s~~~dg~i~iwd~~~~---~-~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 445 (456)
++|++|+.||+|++|++.+. + ....+..|...|+++ +|+|+|++|+
T Consensus 226 ~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v---------------------------~~sp~g~~la 278 (316)
T 3bg1_A 226 LPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHV---------------------------SWSITANILA 278 (316)
T ss_dssp CSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEE---------------------------EECTTTCCEE
T ss_pred CCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEE---------------------------EEcCCCCEEE
Confidence 88999999999999998762 1 233456788999999 9999999999
Q ss_pred EeeCCCceEEC
Q 012799 446 SGSKDSTLKVT 456 (456)
Q Consensus 446 s~s~Dg~v~iW 456 (456)
+|+.||+|+||
T Consensus 279 s~~~D~~v~lw 289 (316)
T 3bg1_A 279 VSGGDNKVTLW 289 (316)
T ss_dssp EEESSSCEEEE
T ss_pred EEcCCCeEEEE
Confidence 99999999999
No 78
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-38 Score=290.20 Aligned_cols=257 Identities=23% Similarity=0.405 Sum_probs=218.8
Q ss_pred cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCC--CCcceeEEecCCCCEEEEEEcCC--CCEEEEEeCCCeE
Q 012799 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN--TQTPMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAGEL 174 (456)
Q Consensus 99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i 174 (456)
++...+.+|.+.|++++|+|++++||+|+.||.|++||+. +++.+..+.+|...|++++|+++ +++|++++.||.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 3567789999999999999999999999999999999998 55677788899999999999987 9999999999999
Q ss_pred EEEeCCCCCC-ccccccCcccceEEEEecccccCCC--CCEEEEEeCCCcEEEEECCCC--eEEEEecCcCccEEEEEeC
Q 012799 175 QCWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAP--CRRFVSASKDGDARIWDVSLR--KCVICLSGHTLAVTCVKWG 249 (456)
Q Consensus 175 ~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~ 249 (456)
++||+.+++. .......|...|.+++|+| + +.++++++.||.|++||++.. .....+..|...|.+++|+
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~ 156 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAP-----HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 156 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECC-----GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEEC
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCC-----CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEc
Confidence 9999998862 2225667899999999999 6 889999999999999999877 3455667899999999999
Q ss_pred C-------------CC-eEEEEeCCCcEEEEECCCCe----EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChH
Q 012799 250 G-------------DG-VIYTGSQDCTIKVWETTQGK----LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE 311 (456)
Q Consensus 250 ~-------------~~-~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (456)
| ++ .+++++.||.|++||++++. ....+..|...|.+++|+|+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~----------------- 219 (379)
T 3jrp_A 157 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL----------------- 219 (379)
T ss_dssp CCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS-----------------
T ss_pred CccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC-----------------
Confidence 9 46 99999999999999998764 4567778999999999999710
Q ss_pred HHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC----ccccccccccEeEEEECCCCCEEEEEECCCcEEEE
Q 012799 312 EMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP----KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387 (456)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw 387 (456)
.+.++++++.||.|++||+...... ......|...|++++|+|++++|++++.||.|++|
T Consensus 220 ----------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw 283 (379)
T 3jrp_A 220 ----------------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 283 (379)
T ss_dssp ----------------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEE
T ss_pred ----------------CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEE
Confidence 0345999999999999998876422 22334588899999999999999999999999999
Q ss_pred eCCCCe
Q 012799 388 NGTTGK 393 (456)
Q Consensus 388 d~~~~~ 393 (456)
++..+.
T Consensus 284 ~~~~~~ 289 (379)
T 3jrp_A 284 KENLEG 289 (379)
T ss_dssp EEEETT
T ss_pred eCCCCC
Confidence 988543
No 79
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-38 Score=317.12 Aligned_cols=195 Identities=11% Similarity=0.100 Sum_probs=167.2
Q ss_pred cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 012799 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP 184 (456)
Q Consensus 105 ~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 184 (456)
.||.+.|++++|+|++++||+|+.||+|+||+..+.+....+ .|...|.+++|+| +++|++++.|++|++||+++++.
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~ 91 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV 91 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE
Confidence 489999999999999999999999999999999877665554 4888999999999 88999999999999999999887
Q ss_pred ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEE-----------EEecCcCccEEEEEeCCCC-
Q 012799 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV-----------ICLSGHTLAVTCVKWGGDG- 252 (456)
Q Consensus 185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~v~~~~~~~~~- 252 (456)
+.. + .|...|.+++|+| +++++++|+.||.|++||+++++.. ..+.+|...|.+++|+|++
T Consensus 92 ~~~-~-~~~~~V~~v~~sp-----~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~ 164 (902)
T 2oaj_A 92 LTT-V-FVPGKITSIDTDA-----SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI 164 (902)
T ss_dssp EEE-E-ECSSCEEEEECCT-----TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE
T ss_pred EEE-E-cCCCCEEEEEECC-----CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCC
Confidence 653 2 3668899999999 9999999999999999999988764 2336788999999999964
Q ss_pred -eEEEEeCCCcEEEEECCCCeEEEEeecC------------------CcceEEEEecCcce-eeeccccCCCCccCC
Q 012799 253 -VIYTGSQDCTIKVWETTQGKLIRELKGH------------------GHWVNSLALSTEYA-LRTGAFDHTGKQYSS 309 (456)
Q Consensus 253 -~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~ 309 (456)
.+++|+.||.| +||+++++.+..+..| ...|.+++|+|++. +.++..+...+.|..
T Consensus 165 ~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~ 240 (902)
T 2oaj_A 165 GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA 240 (902)
T ss_dssp EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 89999999999 9999999998888755 46799999999975 455566666666554
No 80
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3e-37 Score=302.15 Aligned_cols=309 Identities=19% Similarity=0.249 Sum_probs=261.5
Q ss_pred cccccccCCccc-EEEEEECC--CCCeEEEEECCCcEEEEeCCCC--------cceeEEecCCCCEEEEEEcCCCCEEEE
Q 012799 99 RCSATIAGHTEA-VLSVAFSP--DGRQLASGSGDTTVRLWDLNTQ--------TPMFKCTGHKNWVLCIAWSADGKHLVS 167 (456)
Q Consensus 99 ~~~~~l~~h~~~-V~~~~~s~--~~~~l~~~~~d~~v~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~s 167 (456)
.....+.+|.+. |++++|+| ++++||+|+.||.|++||+.++ +....+..|...|.+++|+|++++|++
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 133 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 133 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence 567789999999 99999999 9999999999999999999754 666778889999999999999999999
Q ss_pred EeCC----CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCC-EEEEEeCCCcEEEEECCCCeEEEEecCcCc-
Q 012799 168 GSKA----GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDARIWDVSLRKCVICLSGHTL- 241 (456)
Q Consensus 168 ~~~d----g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~- 241 (456)
++.+ +.|.+|| .++... .+.+|...|.+++|+| ++. .+++++.|+.|++||+.+++.+..+.+|..
T Consensus 134 ~~~~~~~~~~v~~~d--~~~~~~-~~~~~~~~v~~~~~~~-----~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~ 205 (615)
T 1pgu_A 134 VGEGRDNFGVFISWD--SGNSLG-EVSGHSQRINACHLKQ-----SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ 205 (615)
T ss_dssp EECCSSCSEEEEETT--TCCEEE-ECCSCSSCEEEEEECS-----SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT
T ss_pred eccCCCCccEEEEEE--CCCcce-eeecCCccEEEEEECC-----CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCC
Confidence 9988 6899998 444443 5778999999999999 776 899999999999999999999999999999
Q ss_pred --cEEEEEeCCC-C-eEEEEeCCCcEEEEECCCCeEEEEe-e---cCCcceEEEEecCcceeeeccccCCCCccCChHHH
Q 012799 242 --AVTCVKWGGD-G-VIYTGSQDCTIKVWETTQGKLIREL-K---GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM 313 (456)
Q Consensus 242 --~v~~~~~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (456)
.|.+++|+|+ + .+++++.||.|++||+++++.+..+ . .|...|.+++|+ +
T Consensus 206 ~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~--------------------- 263 (615)
T 1pgu_A 206 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-D--------------------- 263 (615)
T ss_dssp TCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-S---------------------
T ss_pred CceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-C---------------------
Confidence 9999999999 7 8999999999999999999999998 6 799999999998 6
Q ss_pred HHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc----cccEeEEEECCCCCEEEEEECCCcEEEEeC
Q 012799 314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH----QQLVNHVYFSPDGQWVASASFDKSIKLWNG 389 (456)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~ 389 (456)
+.++++++.|+.|++||+..... ...+..+ ...+.++.|+ +++++++++.||.|++||+
T Consensus 264 ---------------~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~ 326 (615)
T 1pgu_A 264 ---------------SQKFATVGADATIRVWDVTTSKC-VQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYEL 326 (615)
T ss_dssp ---------------SSEEEEEETTSEEEEEETTTTEE-EEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEET
T ss_pred ---------------CCEEEEEcCCCcEEEEECCCCcE-EEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEEC
Confidence 56699999999999999876543 3334333 4678888886 8999999999999999999
Q ss_pred CCCeEEEEEecccccEEEEEeeeeeeecCCCCceee-------ecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCV-------VDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 390 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.+++.+..+.+|.+.|.++.| +............. ......+..++| ++++.|++++.||.|++|
T Consensus 327 ~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~ 398 (615)
T 1pgu_A 327 GHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVN 398 (615)
T ss_dssp TEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEET
T ss_pred CCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEE
Confidence 999999999999999999977 32000001111111 223455777788 667899999999999998
No 81
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.2e-37 Score=288.55 Aligned_cols=277 Identities=22% Similarity=0.321 Sum_probs=232.2
Q ss_pred cEEEEEECCCCCeE-EEEECCCcEEEEeCCCC----cceeEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCC
Q 012799 110 AVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQ----TPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGK 183 (456)
Q Consensus 110 ~V~~~~~s~~~~~l-~~~~~d~~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~ 183 (456)
....++++|+...+ ++++.||.|+||++.+. .....+.+|...|++++|+| ++++|++|+.||.|++||+.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 34468899887544 45788999999999654 34556778999999999999 99999999999999999999874
Q ss_pred C------ccccccCcccceEEEEecccccCCCC-CEEEEEeCCCcEEEEECCCCeEEEEe--cCcCccEEEEEeCCCC-e
Q 012799 184 P------SGNPLSGHKKWITGISWEPVHLNAPC-RRFVSASKDGDARIWDVSLRKCVICL--SGHTLAVTCVKWGGDG-V 253 (456)
Q Consensus 184 ~------~~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~-~ 253 (456)
. ....+.+|...|.+++|+| ++ .+|++++.||.|++||+++++.+..+ ..|...|.+++|+|++ .
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p-----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 190 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHP-----TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL 190 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECS-----SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC
T ss_pred CccccCCceEEecCCCCeEEEEEECc-----CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE
Confidence 2 2235678999999999999 76 69999999999999999999999999 8899999999999999 9
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEe-ecCCcc-eEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCE
Q 012799 254 IYTGSQDCTIKVWETTQGKLIREL-KGHGHW-VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331 (456)
Q Consensus 254 l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (456)
|++++.||.|++||+++++.+..+ ..|... +..+.|+|+ +.+
T Consensus 191 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~ 234 (402)
T 2aq5_A 191 ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE------------------------------------GKI 234 (402)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECST------------------------------------TEE
T ss_pred EEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCC------------------------------------CcE
Confidence 999999999999999999999888 667665 899999988 455
Q ss_pred EEEE---eCCCcEEEEecCCCCCCcccc-ccccccEeEEEECCCCCEEEE-EECCCcEEEEeCCCCeE-EEEEec--ccc
Q 012799 332 LVSG---SDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDGQWVAS-ASFDKSIKLWNGTTGKF-VAVFRG--HVG 403 (456)
Q Consensus 332 l~~~---~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~s-~~~dg~i~iwd~~~~~~-~~~~~~--~~~ 403 (456)
+++| +.|+.|++||++....+.... ..|...+.+++|+|++++|++ |+.||.|++||+.+++. +..+.. |..
T Consensus 235 l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~ 314 (402)
T 2aq5_A 235 LTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKE 314 (402)
T ss_dssp EEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSS
T ss_pred EEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCC
Confidence 8888 799999999988766543333 357788999999999999865 55799999999998874 444444 458
Q ss_pred cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 404 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+|.++ +|+|++.++++ .|+.+++|
T Consensus 315 ~v~~~---------------------------~~sp~~~~~~s--~~~~~~~~ 338 (402)
T 2aq5_A 315 SQRGM---------------------------GYMPKRGLEVN--KCEIARFY 338 (402)
T ss_dssp CCSEE---------------------------EECCGGGSCGG--GTEEEEEE
T ss_pred cccce---------------------------EEeccccccee--cceeEEEE
Confidence 88888 89999998875 45688887
No 82
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.6e-36 Score=300.59 Aligned_cols=273 Identities=24% Similarity=0.406 Sum_probs=225.3
Q ss_pred cCcccEEEEEEecc-----------ceEEEeecc-------cccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeC
Q 012799 76 VSVEKVLSIVYQPQ-----------AVFRIRPVN-------RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL 137 (456)
Q Consensus 76 ~~~~~~~~~~~~~~-----------~~~~~~~~~-------~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~ 137 (456)
.|...+..+.+.|. ..+++|... .+.+.+.+|...|.+++|+|++++|++|+.||+|++||+
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~ 459 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDL 459 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 36667777777653 245566542 235678999999999999999999999999999999999
Q ss_pred CCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc--ccccCcccceEEEEecccccCCCCCEEEE
Q 012799 138 NTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG--NPLSGHKKWITGISWEPVHLNAPCRRFVS 215 (456)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~l~~ 215 (456)
.+++....+.+|...|.+++|+|++++|++|+.|++|++||........ ....+|...|.+++|+|.. ....+++
T Consensus 460 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~~~l~s 536 (694)
T 3dm0_A 460 AAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT---LQPTIVS 536 (694)
T ss_dssp TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS---SSCEEEE
T ss_pred CCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC---CcceEEE
Confidence 9999999999999999999999999999999999999999986543221 1235788999999999822 2358999
Q ss_pred EeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcce
Q 012799 216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294 (456)
Q Consensus 216 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 294 (456)
++.|+.|++||+++++....+.+|...|++++|+|++ .|++++.||.|++||+++++.+..+.. ...+.+++|+|+
T Consensus 537 ~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~-- 613 (694)
T 3dm0_A 537 ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPN-- 613 (694)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSS--
T ss_pred EeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCC--
Confidence 9999999999999999999999999999999999999 999999999999999999999888764 567999999997
Q ss_pred eeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccc-----------------
Q 012799 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT----------------- 357 (456)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------- 357 (456)
+.++++ +.++.|++||+...... ..+.
T Consensus 614 ----------------------------------~~~l~~-~~~~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 657 (694)
T 3dm0_A 614 ----------------------------------RYWLCA-ATEHGIKIWDLESKSIV-EDLKVDLKAEAEKADNSGPAA 657 (694)
T ss_dssp ----------------------------------SSEEEE-EETTEEEEEETTTTEEE-EEECCCCC-------------
T ss_pred ----------------------------------CcEEEE-EcCCCEEEEECCCCCCh-hhhcccccccccccccccccc
Confidence 333554 45667999998765321 1111
Q ss_pred --cccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799 358 --GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (456)
Q Consensus 358 --~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 390 (456)
.+...+++++|+|+|++|++|+.||.|++|++.
T Consensus 658 ~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 658 TKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ---CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 112247899999999999999999999999985
No 83
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-36 Score=279.36 Aligned_cols=267 Identities=26% Similarity=0.435 Sum_probs=224.7
Q ss_pred cceEEEeec--ccccccccC-CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEE
Q 012799 89 QAVFRIRPV--NRCSATIAG-HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL 165 (456)
Q Consensus 89 ~~~~~~~~~--~~~~~~l~~-h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 165 (456)
+..+.+|.. +.....+.. |...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++| ++++|
T Consensus 112 d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l 189 (401)
T 4aez_A 112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVL 189 (401)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEE
T ss_pred CCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEE
Confidence 344555543 334444444 8999999999999999999999999999999999999999999999999999 56799
Q ss_pred EEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEE
Q 012799 166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTC 245 (456)
Q Consensus 166 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 245 (456)
++++.||.|++||++........+.+|...|.+++|+| ++.+|++++.||.|++||+++++.+..+..|...|.+
T Consensus 190 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~ 264 (401)
T 4aez_A 190 SSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-----DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA 264 (401)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCE
T ss_pred EEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-----CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEE
Confidence 99999999999999965555556788999999999999 8899999999999999999999999999999999999
Q ss_pred EEeCCCC--eEEEEe--CCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhh
Q 012799 246 VKWGGDG--VIYTGS--QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321 (456)
Q Consensus 246 ~~~~~~~--~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (456)
++|+|++ .+++++ .|+.|++||+++++.+..+. +...+.+++|+|+
T Consensus 265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~----------------------------- 314 (401)
T 4aez_A 265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPH----------------------------- 314 (401)
T ss_dssp EEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSS-----------------------------
T ss_pred EEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCC-----------------------------
Confidence 9999977 556654 79999999999999998886 6678999999998
Q ss_pred hhccCCCCCEEEE--EeCCCcEEEEecCCCCC-CccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEE
Q 012799 322 NKIKGNAPERLVS--GSDDFTMFLWEPAVSKQ-PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF 398 (456)
Q Consensus 322 ~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 398 (456)
+..+++ |+.||.|++||+..... ....+.+|...|.+++|+|++++|++++.||.|++|++.+++.+...
T Consensus 315 -------~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 315 -------SKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp -------SSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred -------CCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 455777 55899999999876432 22345689999999999999999999999999999999998877654
Q ss_pred e
Q 012799 399 R 399 (456)
Q Consensus 399 ~ 399 (456)
.
T Consensus 388 ~ 388 (401)
T 4aez_A 388 I 388 (401)
T ss_dssp -
T ss_pred c
Confidence 3
No 84
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.9e-36 Score=306.10 Aligned_cols=276 Identities=19% Similarity=0.309 Sum_probs=236.0
Q ss_pred CcccEEEEEEeccc----------eEEEee--cccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCccee
Q 012799 77 SVEKVLSIVYQPQA----------VFRIRP--VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF 144 (456)
Q Consensus 77 ~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~ 144 (456)
+...+..+.|+|+. .+.+|. .+....++.+|.++|++++|+|++++|++|+.||.|++||+.+++.+.
T Consensus 12 h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~ 91 (814)
T 3mkq_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV 91 (814)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 34456666666644 344554 345678889999999999999999999999999999999999999999
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEE
Q 012799 145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224 (456)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i 224 (456)
.+.+|...|.+++|+|++++|++++.||.|++||++++......+.+|...|.+++|+|. ++..+++++.||.|++
T Consensus 92 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~~l~~~~~dg~v~v 167 (814)
T 3mkq_A 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK----DPSTFASGCLDRTVKV 167 (814)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETT----EEEEEEEEETTSEEEE
T ss_pred EEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcC----CCCEEEEEeCCCeEEE
Confidence 999999999999999999999999999999999999875555567889999999999982 4578999999999999
Q ss_pred EECCCCeEEEEecCcC-ccEEEEEeCC--CC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccc
Q 012799 225 WDVSLRKCVICLSGHT-LAVTCVKWGG--DG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF 300 (456)
Q Consensus 225 wd~~~~~~~~~~~~~~-~~v~~~~~~~--~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 300 (456)
||+.++.....+..+. ..+.+++|+| ++ .+++++.||.|++||+++++.+..+..|...+.+++|+|+
T Consensus 168 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-------- 239 (814)
T 3mkq_A 168 WSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-------- 239 (814)
T ss_dssp EETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS--------
T ss_pred EECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC--------
Confidence 9998887776665554 8899999998 77 9999999999999999999999999999999999999998
Q ss_pred cCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCC--EEEEE
Q 012799 301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ--WVASA 378 (456)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~s~ 378 (456)
+.++++++.||.|++||+... .....+..|...+.+++|+|++. +++++
T Consensus 240 ----------------------------~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 290 (814)
T 3mkq_A 240 ----------------------------LPIIISGSEDGTLKIWNSSTY-KVEKTLNVGLERSWCIATHPTGRKNYIASG 290 (814)
T ss_dssp ----------------------------SSEEEEEETTSCEEEEETTTC-SEEEEECCSSSSEEEEEECTTCGGGEEEEE
T ss_pred ----------------------------CCEEEEEeCCCeEEEEECCCC-cEEEEeecCCCcEEEEEEccCCCceEEEEE
Confidence 566999999999999997654 45556778888999999999987 45555
Q ss_pred ECCCcEEEEeCCCCeE
Q 012799 379 SFDKSIKLWNGTTGKF 394 (456)
Q Consensus 379 ~~dg~i~iwd~~~~~~ 394 (456)
+ ++.+.+|++..+..
T Consensus 291 ~-~~~~~~~~~~~~~~ 305 (814)
T 3mkq_A 291 F-DNGFTVLSLGNDEP 305 (814)
T ss_dssp E-TTEEEEEECSCCSC
T ss_pred e-CCCEEEEEcCCCCc
Confidence 4 66789998776543
No 85
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=9e-37 Score=279.80 Aligned_cols=252 Identities=15% Similarity=0.210 Sum_probs=219.3
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeE--EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 012799 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK--CTGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 177 (456)
....+.+|...|.+++|+|++++|++++.||.|++||+.+++.... +..|...|.+++|+|++++|++++.||.|++|
T Consensus 44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~ 123 (372)
T 1k8k_C 44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 123 (372)
T ss_dssp EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEE
Confidence 6678889999999999999999999999999999999988764443 36799999999999999999999999999999
Q ss_pred eCCCCCC---ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEEC------------------CCCeEEEEe
Q 012799 178 DPQTGKP---SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV------------------SLRKCVICL 236 (456)
Q Consensus 178 d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~------------------~~~~~~~~~ 236 (456)
|++.+.. .......|...|.+++|+| ++.++++++.||.|++||+ ..++.+..+
T Consensus 124 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
T 1k8k_C 124 YFEQENDWWVCKHIKKPIRSTVLSLDWHP-----NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES 198 (372)
T ss_dssp EEETTTTEEEEEEECTTCCSCEEEEEECT-----TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred EecCCCcceeeeeeecccCCCeeEEEEcC-----CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec
Confidence 9988763 2334567889999999999 8899999999999999995 467888899
Q ss_pred cCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHH
Q 012799 237 SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK 315 (456)
Q Consensus 237 ~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (456)
..|...|.+++|+|++ .+++++.||.|++||+++++.+..+..|...+.+++|+|+
T Consensus 199 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~----------------------- 255 (372)
T 1k8k_C 199 SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITE----------------------- 255 (372)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEET-----------------------
T ss_pred CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecC-----------------------
Confidence 9999999999999999 9999999999999999999999999999999999999987
Q ss_pred HHHhhhhhccCCCCCEEEEEeCCCcEEEEecCC--CC-------------------------------CC-------ccc
Q 012799 316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAV--SK-------------------------------QP-------KTR 355 (456)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~-------------------------------~~-------~~~ 355 (456)
+.+++++ .|+.|++|++.. +. .. ...
T Consensus 256 -------------~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (372)
T 1k8k_C 256 -------------SSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL 321 (372)
T ss_dssp -------------TEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred -------------CCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccc
Confidence 3446666 999999999876 21 00 122
Q ss_pred cccccccEeEEEEC-CCC---CEEEEEECCCcEEEEeCCCCe
Q 012799 356 MTGHQQLVNHVYFS-PDG---QWVASASFDKSIKLWNGTTGK 393 (456)
Q Consensus 356 ~~~~~~~v~~~~~s-p~~---~~l~s~~~dg~i~iwd~~~~~ 393 (456)
..+|...|++++|+ ++| ++|++|+.||.|++||+.+++
T Consensus 322 ~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 322 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 24899999999966 677 999999999999999987654
No 86
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.1e-35 Score=276.90 Aligned_cols=280 Identities=25% Similarity=0.425 Sum_probs=228.6
Q ss_pred ccEEEEEEeccceEEEeecc--ccccc--ccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEE
Q 012799 79 EKVLSIVYQPQAVFRIRPVN--RCSAT--IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVL 154 (456)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~--~~~~~--l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~ 154 (456)
..++.+.. +..+++|... ++.+. +.+|.+.|++++|+|+|++||+|+.||+|++||+.+++.+..+.+|...+.
T Consensus 116 ~n~lAvgl--d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~ 193 (420)
T 4gga_A 116 GNVLAVAL--DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG 193 (420)
T ss_dssp TSEEEEEE--TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CCEEEEEe--CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceE
Confidence 44555544 4567777653 44444 457889999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe---
Q 012799 155 CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK--- 231 (456)
Q Consensus 155 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--- 231 (456)
++++ ++.+|++|+.|+.+++||..........+.+|...+..+.|.| ++.++++++.|+.+++|+..+++
T Consensus 194 ~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-----~g~~l~s~~~D~~v~i~~~~~~~~~~ 266 (420)
T 4gga_A 194 SLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNVWPSAPGEGGW 266 (420)
T ss_dssp EEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-----TSSEEEEEETTSCEEEEESSCCSSCS
T ss_pred EEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC-----CCCeeeeeeccccceEEeeccccccc
Confidence 9988 4679999999999999999887766557789999999999999 89999999999999999998764
Q ss_pred -EEEEecCcCccEEEEEeCCCC--eEEE--EeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCc
Q 012799 232 -CVICLSGHTLAVTCVKWGGDG--VIYT--GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ 306 (456)
Q Consensus 232 -~~~~~~~~~~~v~~~~~~~~~--~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 306 (456)
.+.....|...|.+++|+|.+ .+++ |+.|++|++||+.+++....+..+ ..+.++.++++
T Consensus 267 ~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~-------------- 331 (420)
T 4gga_A 267 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPH-------------- 331 (420)
T ss_dssp CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETT--------------
T ss_pred eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCC--------------
Confidence 345667899999999999976 5554 457999999999999999888754 56888888887
Q ss_pred cCChHHHHHHHHhhhhhccCCCCCEEEEEe--CCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcE
Q 012799 307 YSSPEEMKKAALERYNKIKGNAPERLVSGS--DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384 (456)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i 384 (456)
+..+++++ .|+.|++||+.+. ..+..+.+|.+.|++++|+|+|++|++|+.||+|
T Consensus 332 ----------------------~~~lv~~sg~~d~~I~iwd~~~~-~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tv 388 (420)
T 4gga_A 332 ----------------------YKELISGHGFAQNQLVIWKYPTM-AKVAELKGHTSRVLSLTMSPDGATVASAAADETL 388 (420)
T ss_dssp ----------------------TTEEEEEECTTTCCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEE
T ss_pred ----------------------CCeEEEEEecCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeE
Confidence 34455544 7999999997665 4566788999999999999999999999999999
Q ss_pred EEEeCCCCeEEEEEecccccE
Q 012799 385 KLWNGTTGKFVAVFRGHVGPV 405 (456)
Q Consensus 385 ~iwd~~~~~~~~~~~~~~~~v 405 (456)
+|||+.+.......+.+...+
T Consensus 389 riWdv~~~~~~~~~~~~~~~~ 409 (420)
T 4gga_A 389 RLWRCFELDPARRREREKASA 409 (420)
T ss_dssp EEECCSCSSCC----------
T ss_pred EEEECCCCCccchhhhccCCc
Confidence 999998876665555554433
No 87
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.1e-36 Score=279.97 Aligned_cols=274 Identities=17% Similarity=0.224 Sum_probs=232.7
Q ss_pred CcccEEEEEEeccc--------eEEEeecc--c------ccccccCCcccEEEEEECCC----C---CeEEEEECCCcEE
Q 012799 77 SVEKVLSIVYQPQA--------VFRIRPVN--R------CSATIAGHTEAVLSVAFSPD----G---RQLASGSGDTTVR 133 (456)
Q Consensus 77 ~~~~~~~~~~~~~~--------~~~~~~~~--~------~~~~l~~h~~~V~~~~~s~~----~---~~l~~~~~d~~v~ 133 (456)
+...+..+.|.|.. .+++|... . +...+.+|...|++++|+|+ + ++|++++.||.|+
T Consensus 15 h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~ 94 (397)
T 1sq9_A 15 HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLL 94 (397)
T ss_dssp SSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEE
T ss_pred hhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEE
Confidence 45566667776632 33444332 2 56788899999999999999 9 9999999999999
Q ss_pred EEeCCCCcc-----eeEEecC-----CCCEEEEEEc----CCCCE-EEEEeCCCeEEEEeCCC------CCCcc-----c
Q 012799 134 LWDLNTQTP-----MFKCTGH-----KNWVLCIAWS----ADGKH-LVSGSKAGELQCWDPQT------GKPSG-----N 187 (456)
Q Consensus 134 vwd~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~-l~s~~~dg~i~vwd~~~------~~~~~-----~ 187 (456)
+||+.+++. ...+..| ...|.+++|+ |++++ |++++.||.|++||+.+ ++... .
T Consensus 95 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 174 (397)
T 1sq9_A 95 FYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLE 174 (397)
T ss_dssp EEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEE
T ss_pred EEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcce
Confidence 999998887 8888888 5999999999 99999 99999999999999988 55443 2
Q ss_pred cc------cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC---c---CccEEEEEeCCCC-eE
Q 012799 188 PL------SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG---H---TLAVTCVKWGGDG-VI 254 (456)
Q Consensus 188 ~~------~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~---~~~v~~~~~~~~~-~l 254 (456)
.. ..|...|.+++|+| ++ .+++++.||.|++||+++++.+..+.. | ...|.+++|+|++ .|
T Consensus 175 ~~~~~~~~~~~~~~i~~~~~~~-----~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l 248 (397)
T 1sq9_A 175 LQGTVESPMTPSQFATSVDISE-----RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 248 (397)
T ss_dssp EEEEECCSSSSCCCCCEEEECT-----TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEE
T ss_pred eeeeeccccCCCCCceEEEECC-----Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEE
Confidence 11 45788999999999 88 999999999999999999999999988 8 9999999999998 89
Q ss_pred EEEeCC---CcEEEEECCCCeEEEEeec-------------CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHH
Q 012799 255 YTGSQD---CTIKVWETTQGKLIRELKG-------------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (456)
Q Consensus 255 ~~~~~d---g~i~iwd~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (456)
++++.| |.|++||+++++.+..+.. |...|.+++|+|+
T Consensus 249 ~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------------- 302 (397)
T 1sq9_A 249 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS-------------------------- 302 (397)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSS--------------------------
T ss_pred EEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCC--------------------------
Confidence 999999 9999999999999999988 8999999999998
Q ss_pred hhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccc------cc---------------cccEeEEEECCCC-----
Q 012799 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT------GH---------------QQLVNHVYFSPDG----- 372 (456)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~---------------~~~v~~~~~sp~~----- 372 (456)
+.+|++++.||.|++||+.... ....+. +| ...|++++|+|++
T Consensus 303 ----------~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~ 371 (397)
T 1sq9_A 303 ----------GETLCSAGWDGKLRFWDVKTKE-RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGM 371 (397)
T ss_dssp ----------SSEEEEEETTSEEEEEETTTTE-EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBST
T ss_pred ----------CCEEEEEeCCCeEEEEEcCCCc-eeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccc
Confidence 5679999999999999987654 444455 66 8999999999998
Q ss_pred -----CEEEEEECCCcEEEEeCCCCe
Q 012799 373 -----QWVASASFDKSIKLWNGTTGK 393 (456)
Q Consensus 373 -----~~l~s~~~dg~i~iwd~~~~~ 393 (456)
++|++|+.||.|++|++.+|+
T Consensus 372 ~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 372 GADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cccccceEEEecCCCcEEEEEcCCCC
Confidence 799999999999999998764
No 88
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-37 Score=280.46 Aligned_cols=262 Identities=19% Similarity=0.321 Sum_probs=214.6
Q ss_pred cceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--CCccccccCcccceEEEEecccccCCCCCEEEEEeC
Q 012799 141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG--KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK 218 (456)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~ 218 (456)
+.+..+.+|...|++++|+|++++|++|+.||.|++||+..+ +.. ..+.+|...|.+++|++.. ++.+|++++.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~---~~~~l~s~~~ 77 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI-DTLTGHEGPVWRVDWAHPK---FGTILASCSY 77 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE-EEECCCSSCEEEEEECCGG---GCSEEEEEET
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceee-eEecCCCCcEEEEEeCCCC---CCCEEEEecc
Confidence 456678899999999999999999999999999999999743 333 2567899999999998721 3899999999
Q ss_pred CCcEEEEECCCCe--EEEEecCcCccEEEEEeCCC--C-eEEEEeCCCcEEEEECCCCe--EEEEeecCCcceEEEEecC
Q 012799 219 DGDARIWDVSLRK--CVICLSGHTLAVTCVKWGGD--G-VIYTGSQDCTIKVWETTQGK--LIRELKGHGHWVNSLALST 291 (456)
Q Consensus 219 dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~ 291 (456)
||.|++||+.+++ .+..+..|...|.+++|+|+ + .+++++.||.|++||++++. ....+..|...|.+++|+|
T Consensus 78 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 157 (379)
T 3jrp_A 78 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 157 (379)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECC
T ss_pred CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcC
Confidence 9999999999987 77788889999999999998 7 99999999999999999873 4456677899999999998
Q ss_pred cceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC---CccccccccccEeEEEE
Q 012799 292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ---PKTRMTGHQQLVNHVYF 368 (456)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~ 368 (456)
........ ....+++.++++++.|+.|++||++.... ....+.+|...|.+++|
T Consensus 158 ~~~~~~~~-----------------------~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~ 214 (379)
T 3jrp_A 158 ATIEEDGE-----------------------HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW 214 (379)
T ss_dssp CC---------------------------------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE
T ss_pred cccccccc-----------------------ccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEE
Confidence 52110000 00112367799999999999999876553 33456789999999999
Q ss_pred CCC---CCEEEEEECCCcEEEEeCCCCe---EEEEE--ecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecC
Q 012799 369 SPD---GQWVASASFDKSIKLWNGTTGK---FVAVF--RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD 440 (456)
Q Consensus 369 sp~---~~~l~s~~~dg~i~iwd~~~~~---~~~~~--~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 440 (456)
+|+ +++|++++.||.|++||+.++. ....+ ..|...|.++ +|+|+
T Consensus 215 sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~---------------------------~~s~~ 267 (379)
T 3jrp_A 215 SPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA---------------------------SWSLS 267 (379)
T ss_dssp CCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEE---------------------------EECSS
T ss_pred CCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEE---------------------------EEcCC
Confidence 999 8999999999999999998864 22222 3478889999 99999
Q ss_pred CCeEEEeeCCCceEEC
Q 012799 441 SRLLLSGSKDSTLKVT 456 (456)
Q Consensus 441 g~~l~s~s~Dg~v~iW 456 (456)
|++|++++.||.|+||
T Consensus 268 g~~l~~~~~dg~i~iw 283 (379)
T 3jrp_A 268 GNVLALSGGDNKVTLW 283 (379)
T ss_dssp SCCEEEEESSSSEEEE
T ss_pred CCEEEEecCCCcEEEE
Confidence 9999999999999998
No 89
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-37 Score=283.94 Aligned_cols=260 Identities=12% Similarity=0.139 Sum_probs=215.3
Q ss_pred cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 012799 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP 184 (456)
Q Consensus 105 ~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 184 (456)
+.-...|.+++|+|||+++|+++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+. +.
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~---~~ 76 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELA---QQ 76 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCC---CS
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeC---CC
Confidence 34568999999999999999999999999 755554 447899999999999998 4555555554 32
Q ss_pred ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCc-----cEEEEEeCCCC-eEEEEe
Q 012799 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL-----AVTCVKWGGDG-VIYTGS 258 (456)
Q Consensus 185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~-~l~~~~ 258 (456)
.......|...|.+++|+| +|..+++++.||.|++||... ++..+. |.. .+.+++|+|+| .|++|+
T Consensus 77 ~~~~~~~~~~~V~~vawSP-----dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs 148 (588)
T 2j04_A 77 NGLLNSQPVCYPRVCKPSP-----IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN 148 (588)
T ss_dssp SCSSTTSCSCCEEEEEECS-----SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEE
T ss_pred ceEeecCCCCcEEEEEECC-----CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEc
Confidence 2222335688999999999 999999999999999999544 666666 665 49999999999 999999
Q ss_pred CCCcEEEEECCCCe-------EEEEe----ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCC
Q 012799 259 QDCTIKVWETTQGK-------LIREL----KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327 (456)
Q Consensus 259 ~dg~i~iwd~~~~~-------~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (456)
.||+|++||+.++. .+.++ .+|...|.+++|+|+
T Consensus 149 ~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd----------------------------------- 193 (588)
T 2j04_A 149 EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED----------------------------------- 193 (588)
T ss_dssp TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT-----------------------------------
T ss_pred CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC-----------------------------------
Confidence 99999999999875 35666 567789999999998
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCC--cccc-ccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEeccccc
Q 012799 328 APERLVSGSDDFTMFLWEPAVSKQP--KTRM-TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP 404 (456)
Q Consensus 328 ~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~-~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 404 (456)
+ +++++.|+.+++||+...... ...+ .+|...|.+++|+ |+.||+++ +|.|++||+.+++......+|.+.
T Consensus 194 -g--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~ 267 (588)
T 2j04_A 194 -V--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLEN 267 (588)
T ss_dssp -E--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSC
T ss_pred -c--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCce
Confidence 4 788999999999998765532 2334 4788999999999 68899887 699999999988875444489999
Q ss_pred EEEEEeeeeeeecCCCCceeeecccccccceeE--ecCCCeEEEeeCCCceEEC
Q 012799 405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW--SADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 405 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~dg~~l~s~s~Dg~v~iW 456 (456)
|+++ +| +||+..|+++++||+ ++|
T Consensus 268 V~~v---------------------------a~~~s~d~~~La~a~edG~-klw 293 (588)
T 2j04_A 268 FHII---------------------------PLNHEKESTILLMSNKTSY-KVL 293 (588)
T ss_dssp CCEE---------------------------EETTCSSCEEEEECSSCEE-EEE
T ss_pred EEEE---------------------------EeeeCCCCCEEEEEcCCCC-EEE
Confidence 9999 99 999999999999999 887
No 90
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=6.4e-37 Score=280.05 Aligned_cols=244 Identities=20% Similarity=0.311 Sum_probs=211.2
Q ss_pred CcccEEEEEECCC----CCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Q 012799 107 HTEAVLSVAFSPD----GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQT 181 (456)
Q Consensus 107 h~~~V~~~~~s~~----~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~ 181 (456)
|...|++++|+|+ +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+++
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence 6688999999999 67999999999999999999999999999999999999999 999999999999999999998
Q ss_pred CCCcccc--ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEE------------------------
Q 012799 182 GKPSGNP--LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC------------------------ 235 (456)
Q Consensus 182 ~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~------------------------ 235 (456)
++..... ...|...|.+++|+| ++.+|++++.||.|++||+++++....
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (366)
T 3k26_A 148 DTLVAIFGGVEGHRDEVLSADYDL-----LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 222 (366)
T ss_dssp TEEEEEECSTTSCSSCEEEEEECT-----TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCC
T ss_pred CeEEEEecccccccCceeEEEECC-----CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccC
Confidence 8765522 268999999999999 889999999999999999987654332
Q ss_pred ----ecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCe--------------EEEEeecCCcceEEEEecCcceeee
Q 012799 236 ----LSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGK--------------LIRELKGHGHWVNSLALSTEYALRT 297 (456)
Q Consensus 236 ----~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------~~~~~~~~~~~i~~~~~~~~~~~~~ 297 (456)
...|...|.+++|+ ...+++++.||.|++||+++++ .+..+..|...|.+++++|+.
T Consensus 223 ~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---- 297 (366)
T 3k26_A 223 DFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF---- 297 (366)
T ss_dssp SEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECT----
T ss_pred ccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCC----
Confidence 23489999999999 3499999999999999998764 377778888889999988861
Q ss_pred ccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC---ccccccc--cccEeEEEECCCC
Q 012799 298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP---KTRMTGH--QQLVNHVYFSPDG 372 (456)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~--~~~v~~~~~sp~~ 372 (456)
.+.++++++.||.|++||+...... ...+.+| ...|++++|+|++
T Consensus 298 ------------------------------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 347 (366)
T 3k26_A 298 ------------------------------WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS 347 (366)
T ss_dssp ------------------------------TSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTS
T ss_pred ------------------------------CCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCC
Confidence 1456999999999999998775432 2245666 7899999999999
Q ss_pred CEEEEEECCCcEEEEeCC
Q 012799 373 QWVASASFDKSIKLWNGT 390 (456)
Q Consensus 373 ~~l~s~~~dg~i~iwd~~ 390 (456)
++|++++.||.|++||+.
T Consensus 348 ~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 348 SILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SEEEEEETTSEEEEEEC-
T ss_pred CeEEEEeCCCEEEEEEec
Confidence 999999999999999985
No 91
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.5e-36 Score=275.16 Aligned_cols=253 Identities=17% Similarity=0.273 Sum_probs=210.6
Q ss_pred cCCcccEEEEEECCC---CCeEEEEECCCcEEEEeCCCCc-ceeEEecCCCCEEEEEE------cCCCCEEEEEeCCCeE
Q 012799 105 AGHTEAVLSVAFSPD---GRQLASGSGDTTVRLWDLNTQT-PMFKCTGHKNWVLCIAW------SADGKHLVSGSKAGEL 174 (456)
Q Consensus 105 ~~h~~~V~~~~~s~~---~~~l~~~~~d~~v~vwd~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~l~s~~~dg~i 174 (456)
.+|...|.+++|+|+ +++|++|+.||.|++||+.+++ .+..+.+|...|.++.| +|++++|++++.||.|
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i 141 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141 (357)
T ss_dssp EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence 379999999999998 6999999999999999999888 88899999999999955 6799999999999999
Q ss_pred EEEeCCCCCCccccccCccc----ceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC
Q 012799 175 QCWDPQTGKPSGNPLSGHKK----WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG 250 (456)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 250 (456)
++||+++++.....+..|.. .+.++.|.+ .+++++.++++++.||.|++||+++++.... ..|...|.+++|+|
T Consensus 142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~ 219 (357)
T 3i2n_A 142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGN-AYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDR 219 (357)
T ss_dssp EEECTTSCSSCSEEECCCTTSCCCCEEEEEEEC-CCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESC
T ss_pred EEEeCCCCCCcceeccccCCCCCCceEEEEEEe-ccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCC
Confidence 99999988743334444433 788888432 1122889999999999999999999987554 56889999999999
Q ss_pred ---CC-eEEEEeCCCcEEEEECCCCeEEEEe-----ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhh
Q 012799 251 ---DG-VIYTGSQDCTIKVWETTQGKLIREL-----KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321 (456)
Q Consensus 251 ---~~-~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (456)
++ .+++++.||.|++||+++++....+ ..|...|.+++|+|++.
T Consensus 220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------------- 272 (357)
T 3i2n_A 220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNR--------------------------- 272 (357)
T ss_dssp SSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEE---------------------------
T ss_pred CCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCC---------------------------
Confidence 77 9999999999999999876654444 38999999999999842
Q ss_pred hhccCCCCCEEEEEeCCCcEEEEecCCCCC------------------CccccccccccEeEEEECCCCCEEE-EEECCC
Q 012799 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQ------------------PKTRMTGHQQLVNHVYFSPDGQWVA-SASFDK 382 (456)
Q Consensus 322 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------------~~~~~~~~~~~v~~~~~sp~~~~l~-s~~~dg 382 (456)
.++++++.||.|++||++.... ....+.+|...|++++|+|++++|+ +++.||
T Consensus 273 --------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~ 344 (357)
T 3i2n_A 273 --------ELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQ 344 (357)
T ss_dssp --------EEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred --------cEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCC
Confidence 2599999999999999875442 2445678999999999999999988 899999
Q ss_pred cEEEEeCCCCeE
Q 012799 383 SIKLWNGTTGKF 394 (456)
Q Consensus 383 ~i~iwd~~~~~~ 394 (456)
.|++||+.+.+.
T Consensus 345 ~i~iw~~~~~~~ 356 (357)
T 3i2n_A 345 TVRVLIVTKLNK 356 (357)
T ss_dssp EEEEEEECC---
T ss_pred cEEEEECCCccc
Confidence 999999987654
No 92
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-38 Score=296.78 Aligned_cols=269 Identities=12% Similarity=0.052 Sum_probs=206.0
Q ss_pred ccccccCCcccEEEEEECCCC---------CeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeC
Q 012799 100 CSATIAGHTEAVLSVAFSPDG---------RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK 170 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~---------~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 170 (456)
+..++. +.+.|.+++|+|++ ++||+|+.++.. -..+|+++.+++++.
T Consensus 126 ~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~-----------------------~~~~~~~~~laS~s~ 181 (524)
T 2j04_B 126 RGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD-----------------------EPLNEHLEMFDKEKH 181 (524)
T ss_dssp CEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-----------------------------------------
T ss_pred ceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccC-----------------------CccchhhhhhccCCC
Confidence 333443 68899999999987 799999866420 013689999999999
Q ss_pred CCeEEEEeCCCCCCcc---ccccCcccceEEEEecccc-cCCCCCEEEEEeCCCcEEEEECCCCeE-----------EEE
Q 012799 171 AGELQCWDPQTGKPSG---NPLSGHKKWITGISWEPVH-LNAPCRRFVSASKDGDARIWDVSLRKC-----------VIC 235 (456)
Q Consensus 171 dg~i~vwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~-----------~~~ 235 (456)
|++|+|||+.+++... ..+..|.+.|.+++|+|.. .+.++.+|++++.||+|++||+..+.. ...
T Consensus 182 D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~ 261 (524)
T 2j04_B 182 SSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLT 261 (524)
T ss_dssp CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEE
T ss_pred CceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEE
Confidence 9999999998776431 1245677889999999941 112467999999999999999976532 246
Q ss_pred ecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCC-eEEEEeecCCcceEEE--EecCcceeeeccccCCCCccCChHH
Q 012799 236 LSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSL--ALSTEYALRTGAFDHTGKQYSSPEE 312 (456)
Q Consensus 236 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (456)
+.+|...|++++|++++.|++|+.||+|++||++++ .+...+.+|...|.++ .++++
T Consensus 262 l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~-------------------- 321 (524)
T 2j04_B 262 LSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDF-------------------- 321 (524)
T ss_dssp ECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTT--------------------
T ss_pred EEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCC--------------------
Confidence 778999999999998789999999999999999976 3456678899999999 45665
Q ss_pred HHHHHHhhhhhccCCCC-CEEEEEeCCCcEEEEecCCCCCCccccccccc--cEeEEEECCCCCEEEEEECCCcEEEEeC
Q 012799 313 MKKAALERYNKIKGNAP-ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ--LVNHVYFSPDGQWVASASFDKSIKLWNG 389 (456)
Q Consensus 313 ~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~s~~~dg~i~iwd~ 389 (456)
+ .+|++++.|++|++||++.... ...+.+|.. .|.+++|+|+++.+++++.|++|++||+
T Consensus 322 ----------------g~~~laS~S~D~tvklWD~~~~~~-~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~ 384 (524)
T 2j04_B 322 ----------------EDTVVSTVAVDGYFYIFNPKDIAT-TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPS 384 (524)
T ss_dssp ----------------SCCEEEEEETTSEEEEECGGGHHH-HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEET
T ss_pred ----------------CCeEEEEeccCCeEEEEECCCCCc-ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEEC
Confidence 4 5699999999999999876432 223445543 4789999999999999999999999999
Q ss_pred CCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 390 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+++.++..+.+|.+.|+++ +|+|+|++|++|+.||+|+||
T Consensus 385 ~~~~~~~~l~gH~~~V~sv---------------------------a~Sp~g~~l~Sgs~Dgtv~lw 424 (524)
T 2j04_B 385 RAAFAVHPLVSRETTITAI---------------------------GVSRLHPMVLAGSADGSLIIT 424 (524)
T ss_dssp TCTTCCEEEEECSSCEEEE---------------------------ECCSSCCBCEEEETTTEEECC
T ss_pred cccccceeeecCCCceEEE---------------------------EeCCCCCeEEEEECCCEEEEE
Confidence 9999888899999999999 899999999999999999998
No 93
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-35 Score=267.35 Aligned_cols=276 Identities=17% Similarity=0.236 Sum_probs=237.0
Q ss_pred CcccEEEEEEeccc----------eEEEee--cccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCccee
Q 012799 77 SVEKVLSIVYQPQA----------VFRIRP--VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF 144 (456)
Q Consensus 77 ~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~ 144 (456)
+...+..+.|.|+. .+.+|. .++....+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+.
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 110 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVA 110 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 44556666666643 334453 345678899999999999999999999999999999999999999888
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCCCcc----------ccccCccc--ceEEEEecccccC
Q 012799 145 KCTGHKNWVLCIAWSADGKHLVSGSKA-----GELQCWDPQTGKPSG----------NPLSGHKK--WITGISWEPVHLN 207 (456)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~----------~~~~~~~~--~v~~~~~~~~~~~ 207 (456)
.+. +...|.+++|+|+++++++++.+ |.|.+||+..+.... .....|.. .+.+++|+|
T Consensus 111 ~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 185 (369)
T 3zwl_B 111 TWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST---- 185 (369)
T ss_dssp EEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG----
T ss_pred Eee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC----
Confidence 887 88999999999999999999999 999999998765322 12334444 899999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCC-CeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceE
Q 012799 208 APCRRFVSASKDGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVN 285 (456)
Q Consensus 208 ~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 285 (456)
+++.+++++.||.|++||+++ .+.+..+..|...|.+++|+|++ .|++++.||.|++||+++++.+..+. +...+.
T Consensus 186 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~ 263 (369)
T 3zwl_B 186 -KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLN 263 (369)
T ss_dssp -GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEE
T ss_pred -CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCce
Confidence 889999999999999999998 78888999999999999999999 89999999999999999999988887 778899
Q ss_pred EEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC--------------cEEEEecCCCCC
Q 012799 286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF--------------TMFLWEPAVSKQ 351 (456)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~ 351 (456)
.++++|+ +.++++++.++ .+++||.... .
T Consensus 264 ~~~~~~~------------------------------------~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~ 306 (369)
T 3zwl_B 264 TAVITPL------------------------------------KEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE-E 306 (369)
T ss_dssp EEEECSS------------------------------------SSEEEEEECCC-------------CEEEEEETTTC-C
T ss_pred eEEecCC------------------------------------CceEEEeecCCCceEEEEecCCCcceeEEEecCCC-c
Confidence 9999998 55588887777 8999997655 4
Q ss_pred CccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEE
Q 012799 352 PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396 (456)
Q Consensus 352 ~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~ 396 (456)
....+.+|...|++++|+|++++|++++.||.|++|++.++....
T Consensus 307 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 351 (369)
T 3zwl_B 307 EIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDF 351 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTC
T ss_pred chhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchh
Confidence 556678899999999999999999999999999999998765433
No 94
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-37 Score=304.84 Aligned_cols=254 Identities=22% Similarity=0.397 Sum_probs=215.7
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCC--CCcceeEEecCCCCEEEEEEcCC--CCEEEEEeCCCeEEE
Q 012799 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN--TQTPMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAGELQC 176 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~v 176 (456)
+..+.+|.+.|++++|+|++++|++|+.||.|++||+. +++....+.+|.+.|++++|+|+ +++|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 35678999999999999999999999999999999997 45677788899999999999987 999999999999999
Q ss_pred EeCCCCCC-ccccccCcccceEEEEecccccCCC--CCEEEEEeCCCcEEEEECCCC--eEEEEecCcCccEEEEEeCCC
Q 012799 177 WDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAP--CRRFVSASKDGDARIWDVSLR--KCVICLSGHTLAVTCVKWGGD 251 (456)
Q Consensus 177 wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~ 251 (456)
||+.+++. .......|...|.+++|+| + +..+++|+.||.|++||++++ .....+.+|...|.+++|+|.
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp-----~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~ 156 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAP-----HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECC-----GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCC
T ss_pred EECCCCcccccccccCCCCCeEEEEECC-----CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCc
Confidence 99998752 2225677999999999999 6 899999999999999999877 344556789999999999993
Q ss_pred -------------C-eEEEEeCCCcEEEEECCCC----eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHH
Q 012799 252 -------------G-VIYTGSQDCTIKVWETTQG----KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM 313 (456)
Q Consensus 252 -------------~-~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (456)
+ .+++|+.||.|++||++++ .....+.+|...|.+++|+|+..
T Consensus 157 ~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~------------------- 217 (753)
T 3jro_A 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL------------------- 217 (753)
T ss_dssp C---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS-------------------
T ss_pred ccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCC-------------------
Confidence 5 9999999999999999887 56677888999999999999710
Q ss_pred HHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC----CccccccccccEeEEEECCCCCEEEEEECCCcEEEEeC
Q 012799 314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389 (456)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~ 389 (456)
.+.++++++.||.|++||+..... .......|...|++++|+|+|++|++|+.||.|++|++
T Consensus 218 --------------~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 218 --------------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (753)
T ss_dssp --------------SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred --------------CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence 034599999999999999877532 23334568889999999999999999999999999999
Q ss_pred CCC
Q 012799 390 TTG 392 (456)
Q Consensus 390 ~~~ 392 (456)
..+
T Consensus 284 ~~~ 286 (753)
T 3jro_A 284 NLE 286 (753)
T ss_dssp CSS
T ss_pred CCC
Confidence 853
No 95
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-37 Score=284.28 Aligned_cols=242 Identities=19% Similarity=0.258 Sum_probs=204.0
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC-CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEE
Q 012799 146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK-PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224 (456)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i 224 (456)
+..+..+|++++|+|++++|++|+.|+.|++||+.++. .....+.+|...|.+++|+| ++++|++++.|+.|++
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~-----~~~~l~s~s~d~~v~v 81 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP-----KSNRIVTCSQDRNAYV 81 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT-----TTCCEEEEETTSSEEE
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeC-----CCCEEEEEeCCCeEEE
Confidence 34467899999999999999999999999999999873 23336788999999999999 8899999999999999
Q ss_pred EECCCCe---EEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCe---EEEEeec-CCcceEEEEecCcceee
Q 012799 225 WDVSLRK---CVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK---LIRELKG-HGHWVNSLALSTEYALR 296 (456)
Q Consensus 225 wd~~~~~---~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~---~~~~~~~-~~~~i~~~~~~~~~~~~ 296 (456)
||+.+++ ....+..|...|.+++|+|++ .|++++.|+.|++||+++++ ....+.. |...|.+++|+|+
T Consensus 82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---- 157 (377)
T 3dwl_C 82 YEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN---- 157 (377)
T ss_dssp C------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTT----
T ss_pred EEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCC----
Confidence 9999877 677788899999999999998 89999999999999999887 3677777 8999999999998
Q ss_pred eccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC-----------------CCccccccc
Q 012799 297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-----------------QPKTRMTGH 359 (456)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~~~~ 359 (456)
+.++++++.|+.|++||+.... .....+ +|
T Consensus 158 --------------------------------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 204 (377)
T 3dwl_C 158 --------------------------------NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PS 204 (377)
T ss_dssp --------------------------------SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CC
T ss_pred --------------------------------CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cC
Confidence 5669999999999999985321 123334 89
Q ss_pred cccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeE----EEEEecccccEEEEEeeeeeeecCCCCceeeecccccccce
Q 012799 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF----VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLY 435 (456)
Q Consensus 360 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (456)
...|++++|+|++++|++++.||.|++||+.+++. +..+.+|..+|.++
T Consensus 205 ~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~--------------------------- 257 (377)
T 3dwl_C 205 GGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSL--------------------------- 257 (377)
T ss_dssp SSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEE---------------------------
T ss_pred CceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEE---------------------------
Confidence 99999999999999999999999999999999887 78889999999999
Q ss_pred eEecCCCeEEEeeCCCceEEC
Q 012799 436 SWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 436 ~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+|+|+|++|++|+.|+.+.+|
T Consensus 258 ~~s~~~~~l~~~~~~~~~~~~ 278 (377)
T 3dwl_C 258 LWANESAIVAAGYNYSPILLQ 278 (377)
T ss_dssp EEEETTEEEEEESSSSEEEEC
T ss_pred EEcCCCCEEEEEcCCcEEEEE
Confidence 899999999999988877554
No 96
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=8.4e-36 Score=278.29 Aligned_cols=245 Identities=23% Similarity=0.371 Sum_probs=213.8
Q ss_pred eEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCC----------CCCccccccCcccceEEEEecccccCCCCC-
Q 012799 144 FKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQT----------GKPSGNPLSGHKKWITGISWEPVHLNAPCR- 211 (456)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~- 211 (456)
.....|.+.|++++|+|+ +++|++++.||.|++|++.+ .... ..+.+|...|.+++|+| ++.
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~~~-----~~~~ 195 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPD-LRLRGHQKEGYGLSWNP-----NLNG 195 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCS-EEEECCSSCCCCEEECT-----TSTT
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCc-EEecCCCCCeEEEEeCC-----CCCC
Confidence 345579999999999997 78999999999999999976 2333 25678999999999999 666
Q ss_pred EEEEEeCCCcEEEEECCCCeE-------EEEecCcCccEEEEEeCCC-C-eEEEEeCCCcEEEEECCCC---eEEEEeec
Q 012799 212 RFVSASKDGDARIWDVSLRKC-------VICLSGHTLAVTCVKWGGD-G-VIYTGSQDCTIKVWETTQG---KLIRELKG 279 (456)
Q Consensus 212 ~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~-~-~l~~~~~dg~i~iwd~~~~---~~~~~~~~ 279 (456)
+|++|+.||.|++||+..+.. ...+.+|...|.+++|+|+ + .|++++.||.|++||++++ +.+..+..
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~ 275 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 275 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence 999999999999999987321 4566789999999999994 4 8889999999999999987 56777888
Q ss_pred CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc
Q 012799 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH 359 (456)
Q Consensus 280 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 359 (456)
|...|++++|+|++ ...+++|+.||.|++||++....+...+..|
T Consensus 276 ~~~~v~~i~~~p~~-----------------------------------~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h 320 (430)
T 2xyi_A 276 HTAEVNCLSFNPYS-----------------------------------EFILATGSADKTVALWDLRNLKLKLHSFESH 320 (430)
T ss_dssp CSSCEEEEEECSSC-----------------------------------TTEEEEEETTSEEEEEETTCTTSCSEEEECC
T ss_pred CCCCeEEEEeCCCC-----------------------------------CCEEEEEeCCCeEEEEeCCCCCCCeEEeecC
Confidence 99999999999973 3358999999999999998877777788899
Q ss_pred cccEeEEEECCCCC-EEEEEECCCcEEEEeCCC--------------CeEEEEEecccccEEEEEeeeeeeecCCCCcee
Q 012799 360 QQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTT--------------GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYC 424 (456)
Q Consensus 360 ~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~ 424 (456)
...|++++|+|+++ +|++++.||.|++||+.. .+++..+.+|...|.++
T Consensus 321 ~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~---------------- 384 (430)
T 2xyi_A 321 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF---------------- 384 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEE----------------
T ss_pred CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEE----------------
Confidence 99999999999985 699999999999999987 36778888999999999
Q ss_pred eecccccccceeEecCCC-eEEEeeCCCceEEC
Q 012799 425 VVDMSCCMSLYSWSADSR-LLLSGSKDSTLKVT 456 (456)
Q Consensus 425 ~~~~~~~~~~~~~s~dg~-~l~s~s~Dg~v~iW 456 (456)
+|+|+++ +|++++.||.|+||
T Consensus 385 -----------~~~p~~~~~l~s~s~dg~i~iw 406 (430)
T 2xyi_A 385 -----------SWNPNEPWIICSVSEDNIMQVW 406 (430)
T ss_dssp -----------EECSSSTTEEEEEETTSEEEEE
T ss_pred -----------EECCCCCCEEEEEECCCCEEEe
Confidence 9999999 89999999999998
No 97
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-37 Score=287.43 Aligned_cols=291 Identities=16% Similarity=0.181 Sum_probs=229.7
Q ss_pred EECCCCCeEEEEECCCcEEEEeCCCCcceeEE-ecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC---CCCcc-cc
Q 012799 115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-TGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQT---GKPSG-NP 188 (456)
Q Consensus 115 ~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~---~~~~~-~~ 188 (456)
.|+|+++.+++++ .|+ .+++.+..+ .+|.+.|++++|+| ++++|++|+.||.|++||+.+ +.... ..
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 3678888777664 488 457788888 88999999999999 999999999999999999876 44222 12
Q ss_pred ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC---CCeEEEEecC------------cCccEEEEE--eCCC
Q 012799 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS---LRKCVICLSG------------HTLAVTCVK--WGGD 251 (456)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~------------~~~~v~~~~--~~~~ 251 (456)
...|...|.+++|+| ++.+|++++.||.|++||++ +++....... +...+.++. ++++
T Consensus 107 ~~~h~~~v~~~~~~~-----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 181 (437)
T 3gre_A 107 TYDCSSTVTQITMIP-----NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE 181 (437)
T ss_dssp EEECSSCEEEEEECT-----TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS
T ss_pred eccCCCCEEEEEEeC-----CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCC
Confidence 336899999999999 88999999999999999995 4444333221 445666666 5567
Q ss_pred C-eEEEEeCCCcEEEEECCCCeEEEEeec--CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCC
Q 012799 252 G-VIYTGSQDCTIKVWETTQGKLIRELKG--HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (456)
Q Consensus 252 ~-~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (456)
+ .+++++.||.|++||+++++.+..+.. |...|.+++|+|+
T Consensus 182 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~------------------------------------ 225 (437)
T 3gre_A 182 KSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEE------------------------------------ 225 (437)
T ss_dssp CEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTT------------------------------------
T ss_pred CCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCC------------------------------------
Confidence 7 999999999999999999999999988 7899999999998
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCcccc-ccccccEeEEEEC----CCCCEEEEEECCCcEEEEeCCCCeEEEEEecccc
Q 012799 329 PERLVSGSDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFS----PDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403 (456)
Q Consensus 329 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~s----p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 403 (456)
+.++++|+.||.|++||++... ....+ ..|...|++++|+ |++.+|++|+.||.|++||+.+++.+..+.+|..
T Consensus 226 ~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 304 (437)
T 3gre_A 226 CCVLILGTTRGIIDIWDIRFNV-LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDE 304 (437)
T ss_dssp SCEEEEEETTSCEEEEETTTTE-EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSS
T ss_pred CCEEEEEcCCCeEEEEEcCCcc-EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCC
Confidence 5669999999999999987744 33333 3778899999655 4688999999999999999999999999999987
Q ss_pred cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 404 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.+..+.|.+....... ...+.......+..++|+ ++++|++|+.||.|++|
T Consensus 305 ~~~~~~~~~~~~~l~~-~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~w 355 (437)
T 3gre_A 305 QPSMEHFLPIEKGLEE-LNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMF 355 (437)
T ss_dssp CCCGGGGSCBCSSGGG-CCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEE
T ss_pred CCccceeccccccccc-ceecccccCCceEEEEEC-CceEEEecCCCCeEEEE
Confidence 7766644322111000 000111244557788999 88999999999999999
No 98
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-35 Score=276.66 Aligned_cols=255 Identities=18% Similarity=0.140 Sum_probs=214.3
Q ss_pred cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc---ceeEEec------------------------------------
Q 012799 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT---PMFKCTG------------------------------------ 148 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~---~~~~~~~------------------------------------ 148 (456)
..++.+++|+|+|++|+++ .++.|++||+.+++ .+..+..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999977666 57799999999888 5555442
Q ss_pred ------------------CCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCC--CCCCcccccc--CcccceEEEEecccc
Q 012799 149 ------------------HKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQ--TGKPSGNPLS--GHKKWITGISWEPVH 205 (456)
Q Consensus 149 ------------------~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~~--~~~~~~~~~~--~~~~~v~~~~~~~~~ 205 (456)
|...|.+++|+|++++| ++++.||.|++||+. +++... .+. .|...|.+++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~v~~~~~sp-- 159 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLK-LRKRFCFSKRPNAISIAE-- 159 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEE-EEEEEECSSCEEEEEECT--
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceee-eeecccCCCCceEEEEcC--
Confidence 33479999999999996 889999999999998 776554 333 5678899999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEECCCCeEEE----EecCcCccEEEEEeCCC---C-eEEEEeCCCcEEEEECCCCeEEEE-
Q 012799 206 LNAPCRRFVSASKDGDARIWDVSLRKCVI----CLSGHTLAVTCVKWGGD---G-VIYTGSQDCTIKVWETTQGKLIRE- 276 (456)
Q Consensus 206 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~---~-~l~~~~~dg~i~iwd~~~~~~~~~- 276 (456)
++.+|++++.+|.|++|++.+++... .+.+|...|.+++|+|+ + .|++++.|+.|++||+++++.+..
T Consensus 160 ---~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 236 (450)
T 2vdu_B 160 ---DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW 236 (450)
T ss_dssp ---TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE
T ss_pred ---CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee
Confidence 89999999999999999998776543 66789999999999999 8 999999999999999999988877
Q ss_pred eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccc
Q 012799 277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM 356 (456)
Q Consensus 277 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 356 (456)
+.+|...|.+++|+ + +.+|++++.|+.|++||+.++... ..+
T Consensus 237 ~~~h~~~v~~~~~s-d------------------------------------~~~l~s~~~d~~v~vwd~~~~~~~-~~~ 278 (450)
T 2vdu_B 237 LFGHKHFVSSICCG-K------------------------------------DYLLLSAGGDDKIFAWDWKTGKNL-STF 278 (450)
T ss_dssp CCCCSSCEEEEEEC-S------------------------------------TTEEEEEESSSEEEEEETTTCCEE-EEE
T ss_pred ecCCCCceEEEEEC-C------------------------------------CCEEEEEeCCCeEEEEECCCCcEe-eee
Confidence 55899999999999 7 667999999999999998776532 222
Q ss_pred c-------------------------cccccEeEEEECCCCCEEEEEE-CCCcEEEEeC--CCC---eEEEEEecccccE
Q 012799 357 T-------------------------GHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNG--TTG---KFVAVFRGHVGPV 405 (456)
Q Consensus 357 ~-------------------------~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~v 405 (456)
. .....|.+++|+|++++|++++ .|+.|++|++ .++ +.+..+..| +.|
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v 357 (450)
T 2vdu_B 279 DYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNV 357 (450)
T ss_dssp ECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCE
T ss_pred cchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-Cce
Confidence 2 2345689999999999999999 8999999999 566 777888888 889
Q ss_pred EEE
Q 012799 406 YQI 408 (456)
Q Consensus 406 ~~i 408 (456)
.++
T Consensus 358 ~~~ 360 (450)
T 2vdu_B 358 ISL 360 (450)
T ss_dssp EEE
T ss_pred EEE
Confidence 999
No 99
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.3e-36 Score=279.67 Aligned_cols=286 Identities=19% Similarity=0.224 Sum_probs=212.7
Q ss_pred cccEEEEEEeccc-----------eEEEeecc----cccccccCCcccEEEEEECC-CCCeEEEEECCCcEEEEeCCCCc
Q 012799 78 VEKVLSIVYQPQA-----------VFRIRPVN----RCSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQT 141 (456)
Q Consensus 78 ~~~~~~~~~~~~~-----------~~~~~~~~----~~~~~l~~h~~~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~~~ 141 (456)
...+..+.|+|.. .+++|... .....+.+|.+.|++++|+| ++++|++|+.||+|++||++++.
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~ 198 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI 198 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc
Confidence 3457889998732 34566432 23456779999999999998 68999999999999999998765
Q ss_pred ceeEEe--cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCC-EEEEEeC
Q 012799 142 PMFKCT--GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASK 218 (456)
Q Consensus 142 ~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~l~~~~~ 218 (456)
...... .+...+.+++|+|++++|++|+.||.|++||++... +. .+.+|...|.+++|+| ++. ++++++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-~~-~~~~h~~~v~~v~~~p-----~~~~~~~s~s~ 271 (435)
T 4e54_B 199 LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LW-NLRMHKKKVTHVALNP-----CCDWFLATASV 271 (435)
T ss_dssp EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-CC-CSBCCSSCEEEEEECT-----TCSSEEEEEET
T ss_pred eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-eE-EEecccceEEeeeecC-----CCceEEEEecC
Confidence 433333 334567899999999999999999999999997543 33 5788999999999998 554 7889999
Q ss_pred CCcEEEEECCCCeEEEE---ecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcc------eEEEE
Q 012799 219 DGDARIWDVSLRKCVIC---LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHW------VNSLA 288 (456)
Q Consensus 219 dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------i~~~~ 288 (456)
|+.|++||+++.+.... ..+|...|++++|+|++ +|++++.||.|++||+++++....+..|... +....
T Consensus 272 d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (435)
T 4e54_B 272 DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAA 351 (435)
T ss_dssp TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCE
T ss_pred cceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEE
Confidence 99999999987654333 35789999999999999 9999999999999999998877776554321 23345
Q ss_pred ecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEE-E
Q 012799 289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHV-Y 367 (456)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-~ 367 (456)
+++...+......... ...++++..++.|++||..++........+|...|.++ +
T Consensus 352 ~~~~~~~~~~~~~~d~------------------------~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~ 407 (435)
T 4e54_B 352 WHPRYNLIVVGRYPDP------------------------NFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNE 407 (435)
T ss_dssp ECSSSSCEEEECCCCT------------------------TSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEE
T ss_pred EcCCCCEEEEEEcCCC------------------------CeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEE
Confidence 5555433222211111 11133344567899999877665555556788888887 6
Q ss_pred ECCCCCEEEEEECCCcEEEEeCCCCeEE
Q 012799 368 FSPDGQWVASASFDKSIKLWNGTTGKFV 395 (456)
Q Consensus 368 ~sp~~~~l~s~~~dg~i~iwd~~~~~~~ 395 (456)
|+|+|++|++|+ |+.|+||++++++..
T Consensus 408 fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 408 FNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp ECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred ECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 999999999876 889999999988753
No 100
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=2.3e-35 Score=267.94 Aligned_cols=294 Identities=10% Similarity=0.091 Sum_probs=210.4
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEe
Q 012799 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWD 178 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd 178 (456)
...++.+|.+.|++++|+|||++||+|+.++ +++|++.+++....... ..+..+++.++++.+ ++++.|++|++||
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWD 87 (355)
T ss_dssp --------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence 3446688999999999999999999998775 88999987766554432 357888999988877 4677889999999
Q ss_pred CCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC-eEEEEecCcCccEEEEEeCCCCeEEE-
Q 012799 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDGVIYT- 256 (456)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~l~~- 256 (456)
..+++.+.. + .+...|.++.|++ +.++++ .|+.|++||+.++ +.+..+.. +...+++++ ..+++
T Consensus 88 ~~~~~~~~~-~-~~~~~v~~v~~~~-------~~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-~~la~~ 153 (355)
T 3vu4_A 88 DVKKQDVSR-I-KVDAPVKDLFLSR-------EFIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-GLLVYS 153 (355)
T ss_dssp TTTTEEEEE-E-ECSSCEEEEEECS-------SEEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-TEEEEE
T ss_pred CCCCcEEEE-E-ECCCceEEEEEcC-------CEEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc-cEEEEe
Confidence 999887652 2 3667899999977 345544 4789999999987 55554443 344455666 54444
Q ss_pred -EeCCCcEEEEECCCCe---------------E-EEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHh
Q 012799 257 -GSQDCTIKVWETTQGK---------------L-IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319 (456)
Q Consensus 257 -~~~dg~i~iwd~~~~~---------------~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (456)
|+.||.|++||+++++ + +..+.+|...|.+++|+|+
T Consensus 154 sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~--------------------------- 206 (355)
T 3vu4_A 154 NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK--------------------------- 206 (355)
T ss_dssp ESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT---------------------------
T ss_pred CCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC---------------------------
Confidence 6889999999999865 2 6778899999999999998
Q ss_pred hhhhccCCCCCEEEEEeCCCc-EEEEecCCCCCCccccc-c-ccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEE-
Q 012799 320 RYNKIKGNAPERLVSGSDDFT-MFLWEPAVSKQPKTRMT-G-HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV- 395 (456)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~-~-~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~- 395 (456)
+.+|++|+.|++ |++||++++... ..+. + |...|++++|+|+|++|++++.||.|++||+..+...
T Consensus 207 ---------g~~l~s~s~d~~~v~iwd~~~~~~~-~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~ 276 (355)
T 3vu4_A 207 ---------SDMVATCSQDGTIIRVFKTEDGVLV-REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNK 276 (355)
T ss_dssp ---------SSEEEEEETTCSEEEEEETTTCCEE-EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCC
T ss_pred ---------CCEEEEEeCCCCEEEEEECCCCcEE-EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcc
Confidence 667999999998 999998776544 4454 5 9999999999999999999999999999999875321
Q ss_pred -EEEecccccEEEEEeeeee---eecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 396 -AVFRGHVGPVYQIRFELIY---CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 396 -~~~~~~~~~v~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
..+..+ +....|...+ .+..+. ........++|++||++|++++.||.+++|
T Consensus 277 ~~~~~~~---~~~~~~~~~~~~~~~~~~~------~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~ 332 (355)
T 3vu4_A 277 RHALKGW---INMKYFQSEWSLCNFKLSV------DKHVRGCKIAWISESSLVVVWPHTRMIETF 332 (355)
T ss_dssp SEETTTT---EECCCCCCSSCSEEEECCC------CTTCCCCEEEESSSSEEEEEETTTTEEEEE
T ss_pred cccccce---eeccccccccceeEEEecc------CCCCCceEEEEeCCCCEEEEEeCCCeEEEE
Confidence 111111 0000000000 000000 011112446999999999999999999886
No 101
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-35 Score=268.64 Aligned_cols=269 Identities=11% Similarity=-0.005 Sum_probs=211.6
Q ss_pred EEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC---------CC
Q 012799 112 LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ---------TG 182 (456)
Q Consensus 112 ~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~---------~~ 182 (456)
....+.+++.+|++|+.||+|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.. ++
T Consensus 40 ~~~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 40 LNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp ECSSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred hhhhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCc
Confidence 334455688899999999999999999999888776 466888889888 9999999999999765 34
Q ss_pred CCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CcCccEEEEEeCCCC-eEEEEeCC
Q 012799 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGGDG-VIYTGSQD 260 (456)
Q Consensus 183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~~d 260 (456)
+.......+|...|.+++|+|.. +++++++++.||.|++||+++++...... .+...+.+++|+|++ .+++|+.|
T Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~---~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d 191 (343)
T 3lrv_A 115 KVLREIEVDSANEIIYMYGHNEV---NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD 191 (343)
T ss_dssp CEEEEEECCCSSCEEEEECCC------CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT
T ss_pred ceeEEeecCCCCCEEEEEcCCCC---CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC
Confidence 33333344666889999998832 56899999999999999999999877663 455689999999999 88899999
Q ss_pred CcEEEEECCCCeEE-EEeec-CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC
Q 012799 261 CTIKVWETTQGKLI-RELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (456)
Q Consensus 261 g~i~iwd~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 338 (456)
|.|++||+++++.+ ..+.. |..+|.+++|+|+ +.++++++.
T Consensus 192 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~------------------------------------g~~l~s~~~- 234 (343)
T 3lrv_A 192 GILDVYNLSSPDQASSRFPVDEEAKIKEVKFADN------------------------------------GYWMVVECD- 234 (343)
T ss_dssp SCEEEEESSCTTSCCEECCCCTTSCEEEEEECTT------------------------------------SSEEEEEES-
T ss_pred CEEEEEECCCCCCCccEEeccCCCCEEEEEEeCC------------------------------------CCEEEEEeC-
Confidence 99999999999887 77887 9999999999998 566999994
Q ss_pred CcEEEEecCCCCCCcc--ccccccccEe--EEEECCCCCEEEEEEC-CCcEEEEeCCCCeEEEEEecccccEEEEEeeee
Q 012799 339 FTMFLWEPAVSKQPKT--RMTGHQQLVN--HVYFSPDGQWVASASF-DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELI 413 (456)
Q Consensus 339 g~i~iwd~~~~~~~~~--~~~~~~~~v~--~~~~sp~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 413 (456)
+.|++||++....... .+..|...+. +++|+|+|++|++++. |+.+++|++..+...... .++..+
T Consensus 235 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~----- 305 (343)
T 3lrv_A 235 QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESAL----- 305 (343)
T ss_dssp SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEEC-----
T ss_pred CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeE-----
Confidence 5999999887654322 2222444444 6999999999999998 999999998765443332 455556
Q ss_pred eeecCCCCceeeecccccccceeEec---CCCeEEEeeCCCceEEC
Q 012799 414 YCFRYPSNFYCVVDMSCCMSLYSWSA---DSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~s~---dg~~l~s~s~Dg~v~iW 456 (456)
+|++ +++.|++++.||.++++
T Consensus 306 ----------------------~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 306 ----------------------CLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp ----------------------CC----CCCCEEEEEEETTEEEEE
T ss_pred ----------------------ecCccccccceeEEEecCCceEEE
Confidence 7787 88899999999988764
No 102
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=3.6e-35 Score=274.04 Aligned_cols=252 Identities=19% Similarity=0.356 Sum_probs=219.3
Q ss_pred ccccCCcccEEEEEECCC-CCeEEEEECCCcEEEEeCCC----------CcceeEEecCCCCEEEEEEcCCCC-EEEEEe
Q 012799 102 ATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNT----------QTPMFKCTGHKNWVLCIAWSADGK-HLVSGS 169 (456)
Q Consensus 102 ~~l~~h~~~V~~~~~s~~-~~~l~~~~~d~~v~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~ 169 (456)
..+.+|.+.|++++|+|+ +.+||+++.||.|++|++.+ ......+.+|...|.+++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 345689999999999997 78999999999999999986 577888899999999999999988 999999
Q ss_pred CCCeEEEEeCCCCCCc------cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC---eEEEEecCcC
Q 012799 170 KAGELQCWDPQTGKPS------GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR---KCVICLSGHT 240 (456)
Q Consensus 170 ~dg~i~vwd~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~ 240 (456)
.||.|++|++.++... ...+.+|...|.+++|+|. ++..|++++.||.|++||++++ +.+..+..|.
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~----~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 277 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL----HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 277 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS----CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC----CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC
Confidence 9999999999875431 2245689999999999983 4578999999999999999977 5677778899
Q ss_pred ccEEEEEeCCCC--eEEEEeCCCcEEEEECCC-CeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHH
Q 012799 241 LAVTCVKWGGDG--VIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA 317 (456)
Q Consensus 241 ~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (456)
..|++++|+|++ .+++|+.||.|++||+++ +..+..+..|...|.+++|+|++
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~------------------------ 333 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN------------------------ 333 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSC------------------------
T ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCC------------------------
Confidence 999999999987 688999999999999998 56788888899999999999983
Q ss_pred HhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC-------------CCccccccccccEeEEEECCCCC-EEEEEECCCc
Q 012799 318 LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-------------QPKTRMTGHQQLVNHVYFSPDGQ-WVASASFDKS 383 (456)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------------~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~ 383 (456)
...+++++.|+.|++||+.... .......+|...|++++|+|+++ +|++++.||.
T Consensus 334 -----------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~ 402 (430)
T 2xyi_A 334 -----------ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI 402 (430)
T ss_dssp -----------TTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred -----------CCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCC
Confidence 3459999999999999987632 34455678899999999999999 8999999999
Q ss_pred EEEEeCCCC
Q 012799 384 IKLWNGTTG 392 (456)
Q Consensus 384 i~iwd~~~~ 392 (456)
|++|++...
T Consensus 403 i~iw~~~~~ 411 (430)
T 2xyi_A 403 MQVWQMAEN 411 (430)
T ss_dssp EEEEEECHH
T ss_pred EEEeEcccc
Confidence 999998753
No 103
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-33 Score=251.47 Aligned_cols=258 Identities=20% Similarity=0.305 Sum_probs=220.5
Q ss_pred eEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCC---cceeEEecCCCCEEEEEEcCCCCEE
Q 012799 91 VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ---TPMFKCTGHKNWVLCIAWSADGKHL 165 (456)
Q Consensus 91 ~~~~~~~--~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l 165 (456)
.+++|.. ......+.+|...|.+++|+|++++|++++.||.|++|++... +....+.+|...|.+++| +++++
T Consensus 40 ~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l 117 (313)
T 3odt_A 40 TVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVV 117 (313)
T ss_dssp EEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEE
T ss_pred cEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEE
Confidence 3444543 3456778899999999999999999999999999999998654 567778899999999999 67799
Q ss_pred EEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC-cCccEE
Q 012799 166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG-HTLAVT 244 (456)
Q Consensus 166 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~ 244 (456)
++++.||.|++|| .++... .+..|...+.++.|.|. +++.+++++.||.|++|| ..+....+.. |...+.
T Consensus 118 ~~~~~d~~i~~~d--~~~~~~-~~~~~~~~v~~~~~~~~----~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~ 188 (313)
T 3odt_A 118 ISGSWDKTAKVWK--EGSLVY-NLQAHNASVWDAKVVSF----SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVR 188 (313)
T ss_dssp EEEETTSEEEEEE--TTEEEE-EEECCSSCEEEEEEEET----TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEE
T ss_pred EEEeCCCCEEEEc--CCcEEE-ecccCCCceeEEEEccC----CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEE
Confidence 9999999999999 333333 56779999999999873 678999999999999999 5566667766 899999
Q ss_pred EEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhc
Q 012799 245 CVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324 (456)
Q Consensus 245 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (456)
+++|+|++.+++++.||.|++||+++++.+..+..|...+.+++++|+
T Consensus 189 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-------------------------------- 236 (313)
T 3odt_A 189 HLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPN-------------------------------- 236 (313)
T ss_dssp EEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT--------------------------------
T ss_pred EEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecC--------------------------------
Confidence 999999999999999999999999999999999999999999999997
Q ss_pred cCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEE
Q 012799 325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF 398 (456)
Q Consensus 325 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 398 (456)
+ .+++++.||.|++||+.... ....+..|...|.+++|+|+++ +++++.||.|++||+++++.+...
T Consensus 237 ----~-~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 237 ----G-DIVSCGEDRTVRIWSKENGS-LKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp ----S-CEEEEETTSEEEEECTTTCC-EEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred ----C-CEEEEecCCEEEEEECCCCc-eeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 3 48999999999999977654 5566778889999999999998 567899999999999988765543
No 104
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.2e-33 Score=250.43 Aligned_cols=266 Identities=26% Similarity=0.436 Sum_probs=220.9
Q ss_pred EEEEEEeccceEEEeec--ccccccc--cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEE
Q 012799 81 VLSIVYQPQAVFRIRPV--NRCSATI--AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCI 156 (456)
Q Consensus 81 ~~~~~~~~~~~~~~~~~--~~~~~~l--~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~ 156 (456)
++.+.. +..+++|.. +++.+.+ .+|...|++++|+|++++||+|+.||+|++||+.+++.+..+.+|...+.++
T Consensus 38 ~lAvg~--D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~ 115 (318)
T 4ggc_A 38 VLAVAL--DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL 115 (318)
T ss_dssp EEEEEE--TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred EEEEEe--CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEe
Confidence 444433 455677764 3455544 5788999999999999999999999999999999999999999999998877
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE----
Q 012799 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC---- 232 (456)
Q Consensus 157 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---- 232 (456)
.+ ++..+++++.++.+++|+...+......+.+|...+..+.+.+ ++.++++++.||.|++||+++++.
T Consensus 116 ~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 188 (318)
T 4ggc_A 116 SW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNVWPSAPGEGGWVP 188 (318)
T ss_dssp EE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-----TSSEEEEEETTSCEEEEESSCBTTBSCC
T ss_pred ec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-----CCCEEEEEecCcceeEEECCCCcccccc
Confidence 66 5679999999999999999888766667788999999999998 889999999999999999987643
Q ss_pred EEEecCcCccEEEEEeCCCC--e--EEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccC
Q 012799 233 VICLSGHTLAVTCVKWGGDG--V--IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS 308 (456)
Q Consensus 233 ~~~~~~~~~~v~~~~~~~~~--~--l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 308 (456)
......+...|.++.+.+.+ . +++++.++.|++||.+......... +...+..+.+++.
T Consensus 189 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~---------------- 251 (318)
T 4ggc_A 189 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPH---------------- 251 (318)
T ss_dssp SEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETT----------------
T ss_pred eeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeeccc----------------
Confidence 34556688899999999876 3 3456778999999999887766655 6667888888887
Q ss_pred ChHHHHHHHHhhhhhccCCCCCEEEE--EeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEE
Q 012799 309 SPEEMKKAALERYNKIKGNAPERLVS--GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL 386 (456)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~i 386 (456)
+..+++ |+.|+.|++||+++. ..+..+.+|.+.|++++|+|+|++|++|+.||+|+|
T Consensus 252 --------------------~~~~~~~sg~~d~~i~iwd~~~~-~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~i 310 (318)
T 4ggc_A 252 --------------------YKELISGHGFAQNQLVIWKYPTM-AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 310 (318)
T ss_dssp --------------------TTEEEEEECTTTCCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred --------------------ccceEEEEEcCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Confidence 333444 447999999997765 456678899999999999999999999999999999
Q ss_pred EeCCCCe
Q 012799 387 WNGTTGK 393 (456)
Q Consensus 387 wd~~~~~ 393 (456)
||+.+..
T Consensus 311 Wd~~~~d 317 (318)
T 4ggc_A 311 WRCFELD 317 (318)
T ss_dssp ECCSCCC
T ss_pred EECCCCC
Confidence 9997653
No 105
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=9.6e-35 Score=269.09 Aligned_cols=252 Identities=18% Similarity=0.273 Sum_probs=214.3
Q ss_pred ccccccCCcccEEEEEECC-CCCeEEEEECCCcEEEEeCCCC-------cceeEEecCCCCEEEEEEcCCC-CEEEEEeC
Q 012799 100 CSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-------TPMFKCTGHKNWVLCIAWSADG-KHLVSGSK 170 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~ 170 (456)
....+.+|.+.|++++|+| ++++||+|+.||+|++||+.++ +++..+.+|...|.+++|+|++ ++|++++.
T Consensus 73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~ 152 (402)
T 2aq5_A 73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC 152 (402)
T ss_dssp TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET
T ss_pred CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC
Confidence 4567889999999999999 9999999999999999999987 6678889999999999999998 69999999
Q ss_pred CCeEEEEeCCCCCCccccc-cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCcCcc-EEEEE
Q 012799 171 AGELQCWDPQTGKPSGNPL-SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-SGHTLA-VTCVK 247 (456)
Q Consensus 171 dg~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~-v~~~~ 247 (456)
||.|++||+++++...... ..|...|.+++|+| ++.+|++++.||.|++||+++++.+..+ ..|... +.++.
T Consensus 153 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 227 (402)
T 2aq5_A 153 DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-----DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV 227 (402)
T ss_dssp TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-----TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEE
T ss_pred CCEEEEEECCCCCccEEEecCCCCCceEEEEECC-----CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEE
Confidence 9999999999988765322 77999999999999 8999999999999999999999999888 778765 89999
Q ss_pred eCCCC-eEEEE---eCCCcEEEEECCCCeE-EEEee-cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhh
Q 012799 248 WGGDG-VIYTG---SQDCTIKVWETTQGKL-IRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321 (456)
Q Consensus 248 ~~~~~-~l~~~---~~dg~i~iwd~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (456)
|+|++ .+++| +.|+.|++||+++++. +.... .+...+.+++|+|+
T Consensus 228 ~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~----------------------------- 278 (402)
T 2aq5_A 228 FVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPD----------------------------- 278 (402)
T ss_dssp ECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETT-----------------------------
T ss_pred EcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCC-----------------------------
Confidence 99999 66666 6899999999998654 22222 46677999999998
Q ss_pred hhccCCCCCEEE-EEeCCCcEEEEecCCCCCCcccccc--ccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeE
Q 012799 322 NKIKGNAPERLV-SGSDDFTMFLWEPAVSKQPKTRMTG--HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF 394 (456)
Q Consensus 322 ~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~ 394 (456)
+.+++ +|+.|+.|++||+.........+.. |...|.+++|+|++.++++ .++.+++|++.+++.
T Consensus 279 -------~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 279 -------TNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp -------TTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred -------CCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 44465 5668999999998877653444443 4589999999999998775 467999999988754
No 106
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-36 Score=276.04 Aligned_cols=278 Identities=15% Similarity=0.131 Sum_probs=224.5
Q ss_pred CcCcccEEEEEEeccceEEEeecc--ccccccc-CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCC
Q 012799 75 KVSVEKVLSIVYQPQAVFRIRPVN--RCSATIA-GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN 151 (456)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~-~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~ 151 (456)
+.+...+..+.|.|+...+.+... +....+. +|.+.|.+++|||+|++||+++.||.|++||.++ .+..+. |..
T Consensus 49 ~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~ 125 (588)
T 2j04_A 49 NCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKG 125 (588)
T ss_dssp SSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSS
T ss_pred cCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCC
Confidence 357778899999998855443332 2223343 6689999999999999999999999999999654 555556 665
Q ss_pred -----CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC------cccc----ccCcccceEEEEecccccCCCCCEEEEE
Q 012799 152 -----WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP------SGNP----LSGHKKWITGISWEPVHLNAPCRRFVSA 216 (456)
Q Consensus 152 -----~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~------~~~~----~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 216 (456)
.|.+++|+|||++||+|+.||+|++||+.++.. .... ..+|...|.+++|+| +| ++++
T Consensus 126 ~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-----dg--Laas 198 (588)
T 2j04_A 126 NLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-----DV--LVAA 198 (588)
T ss_dssp CSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-----TE--EEEE
T ss_pred ccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-----Cc--EEEE
Confidence 599999999999999999999999999998753 1112 267889999999999 77 8899
Q ss_pred eCCCcEEEEECCCCeE---EEEe-cCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEe--c
Q 012799 217 SKDGDARIWDVSLRKC---VICL-SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLAL--S 290 (456)
Q Consensus 217 ~~dg~i~iwd~~~~~~---~~~~-~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~--~ 290 (456)
+.|+.|++||+..+.. ...+ .+|...|.+++|+ +..+++++ +++|++||+.+++......+|...+..+++ +
T Consensus 199 s~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s 276 (588)
T 2j04_A 199 LSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHE 276 (588)
T ss_dssp ETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTC
T ss_pred eCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeC
Confidence 9999999999988773 3456 4788999999999 45788776 699999999988774444479999999999 8
Q ss_pred CcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECC
Q 012799 291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP 370 (456)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp 370 (456)
|+ +..+++++.||+ ++|... .++++|
T Consensus 277 ~d------------------------------------~~~La~a~edG~-klw~~d-----------------~~~~sp 302 (588)
T 2j04_A 277 KE------------------------------------STILLMSNKTSY-KVLLED-----------------ELHVTA 302 (588)
T ss_dssp SS------------------------------------CEEEEECSSCEE-EEEESS-----------------SEEEEC
T ss_pred CC------------------------------------CCEEEEEcCCCC-EEEeec-----------------cEEECC
Confidence 87 455999999999 999965 266999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC
Q 012799 371 DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449 (456)
Q Consensus 371 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~ 449 (456)
|+..+++. |+++++|+...+. +..+++ ...|+++ +|||||+.+|+++.
T Consensus 303 d~~l~a~~--d~~v~lW~~~g~~-l~~~~~-~~~I~~v---------------------------a~SPdG~~lA~~~~ 350 (588)
T 2j04_A 303 DNIIAPYL--EKKFKKWSTIWNE-FNNYET-TLVIHGI---------------------------SLSPDGYSIAIVYD 350 (588)
T ss_dssp CCSSHHHH--HHHHHHTTTTTTS-SSSSCC-EEEEEEE---------------------------EECTTSSEEEEEEE
T ss_pred CceEEEEc--CCEEEEEECCCCc-eeeecc-ceEEEEE---------------------------EECCCCCEEEEEEe
Confidence 99888775 9999999975444 444544 6678888 89999999999875
No 107
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=262.34 Aligned_cols=281 Identities=22% Similarity=0.270 Sum_probs=202.4
Q ss_pred cCCcccEEEEEECC-CCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCC---CCEEEEEeCCCeEEEEeCC
Q 012799 105 AGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD---GKHLVSGSKAGELQCWDPQ 180 (456)
Q Consensus 105 ~~h~~~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~dg~i~vwd~~ 180 (456)
.+|...|.+++|+| ++.+|++++.||.|++||+.+++....+. +...+.++.|++. +.++++++.||.|++||++
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 36999999999999 77899999999999999999988887776 7888999999984 4599999999999999999
Q ss_pred CCCCccccccCcccceEEEEecccccCCCCC-EEEEEeCCCcEEEEECCCCe-EEEEe---------------cCcCccE
Q 012799 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDARIWDVSLRK-CVICL---------------SGHTLAV 243 (456)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~---------------~~~~~~v 243 (456)
+++... .+..|...|.+++|+| ++. .+++++.||.|++||++++. ++..+ ..|...|
T Consensus 175 ~~~~~~-~~~~~~~~v~~~~~~~-----~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 248 (408)
T 4a11_B 175 SGSCSH-ILQGHRQEILAVSWSP-----RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV 248 (408)
T ss_dssp SSCCCE-EECCCCSCEEEEEECS-----SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCE
T ss_pred Ccceee-eecCCCCcEEEEEECC-----CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCce
Confidence 887765 5778999999999999 777 58999999999999998765 33333 4688999
Q ss_pred EEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcc--eEEEEecCcceeeeccccCCCCccCChHHHHHHHHhh
Q 012799 244 TCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHW--VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320 (456)
Q Consensus 244 ~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (456)
.+++|+|++ .+++++.||.|++||+++++....+..+... ...+.+.
T Consensus 249 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 298 (408)
T 4a11_B 249 NGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFT------------------------------ 298 (408)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCE------------------------------
T ss_pred eEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeE------------------------------
Confidence 999999999 8999999999999999988765443322110 0000000
Q ss_pred hhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799 321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG 400 (456)
Q Consensus 321 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 400 (456)
........+++++.++.|++||+... .....+.+|...|++++|+|++++|++|+.||.|++||+.+++.+.....
T Consensus 299 ---~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 374 (408)
T 4a11_B 299 ---VSCGCSSEFVFVPYGSTIAVYTVYSG-EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDE 374 (408)
T ss_dssp ---ECCSSSSCEEEEEETTEEEEEETTTC-CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------
T ss_pred ---EecCCCceEEEEecCCEEEEEECcCC-cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCc
Confidence 00012345788889999999997664 45667789999999999999999999999999999999999887765543
Q ss_pred ccccEEEEEeeeeeeecCCCCceeeecccccccceeEec-CCCeEEEeeCCCceEEC
Q 012799 401 HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA-DSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 401 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~s~s~Dg~v~iW 456 (456)
+.... .+.+ +...+.+++.|+.+++|
T Consensus 375 ~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~W 401 (408)
T 4a11_B 375 TTTKS------------------------------QLNPAFEDAWSSSDEEGGTSAW 401 (408)
T ss_dssp ---------------------------------------------------------
T ss_pred eEecc------------------------------ccccccceeecccCccCceeec
Confidence 32221 2222 33456677889999999
No 108
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.6e-34 Score=265.92 Aligned_cols=268 Identities=17% Similarity=0.202 Sum_probs=211.1
Q ss_pred EeCCCCcceeEEecCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCccccc-cCcccceEEEEecccccCCCCCE
Q 012799 135 WDLNTQTPMFKCTGHKNWVLCIAWSADG-KHLVSGSKAGELQCWDPQTGKPSGNPL-SGHKKWITGISWEPVHLNAPCRR 212 (456)
Q Consensus 135 wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~ 212 (456)
|++.+.+....+.+|...|.+++|+|++ ++|++|+.||.|++||+.+++...... .+|...|.+++|+|. ++.+
T Consensus 58 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~~ 133 (383)
T 3ei3_B 58 RSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF----NTNQ 133 (383)
T ss_dssp HHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT----EEEE
T ss_pred ccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC----CCCE
Confidence 3344555666788999999999999998 999999999999999999887654322 479999999999982 3579
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEecC---cCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEE
Q 012799 213 FVSASKDGDARIWDVSLRKCVICLSG---HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA 288 (456)
Q Consensus 213 l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 288 (456)
+++++.|+.|++||++. ..+..+.. +...|.+++|+|++ .+++++.||.|++||+ +++.+..+..|...|.+++
T Consensus 134 l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~ 211 (383)
T 3ei3_B 134 LFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAE 211 (383)
T ss_dssp EEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEE
T ss_pred EEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEE
Confidence 99999999999999986 44444433 44889999999999 9999999999999999 5778889999999999999
Q ss_pred ecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCC-EEEEEeCCCcEEEEecCCCCC--CccccccccccEeE
Q 012799 289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE-RLVSGSDDFTMFLWEPAVSKQ--PKTRMTGHQQLVNH 365 (456)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~ 365 (456)
|+|+ +. ++++++.|+.|++||++.... ......+|...|.+
T Consensus 212 ~~~~------------------------------------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 255 (383)
T 3ei3_B 212 FNPR------------------------------------CDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNA 255 (383)
T ss_dssp ECSS------------------------------------CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEE
T ss_pred ECCC------------------------------------CCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEE
Confidence 9998 34 699999999999999876432 12222379999999
Q ss_pred EEECC-CCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeE
Q 012799 366 VYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL 444 (456)
Q Consensus 366 ~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 444 (456)
++|+| ++++|++++.||.|++||+.+++.+..+.+|......- .............+..++|+|||++
T Consensus 256 ~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~p~~~~~~~~~s~dg~~- 324 (383)
T 3ei3_B 256 AYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQH----------LTPIKATWHPMYDLIVAGRYPDDQL- 324 (383)
T ss_dssp EEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTT----------SCCCCCEECSSSSEEEEECBCCTTT-
T ss_pred EEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccc----------ccceEEeccCCCCceEEEecCCccc-
Confidence 99999 99999999999999999999988877777654321100 0000000011112223478899888
Q ss_pred EEeeCCCceEEC
Q 012799 445 LSGSKDSTLKVT 456 (456)
Q Consensus 445 ~s~s~Dg~v~iW 456 (456)
+|+.||.|+||
T Consensus 325 -s~s~d~~i~iw 335 (383)
T 3ei3_B 325 -LLNDKRTIDIY 335 (383)
T ss_dssp -CTTCCCCEEEE
T ss_pred -ccCCCCeEEEE
Confidence 89999999998
No 109
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.8e-34 Score=268.69 Aligned_cols=255 Identities=27% Similarity=0.488 Sum_probs=218.1
Q ss_pred eEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEE
Q 012799 91 VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG 168 (456)
Q Consensus 91 ~~~~~~~--~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 168 (456)
.+++|.. +++...+.+|.+.|.+++| ++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+ +.++++|
T Consensus 154 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~ 229 (435)
T 1p22_A 154 TIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTC 229 (435)
T ss_dssp CEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEE
T ss_pred eEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEe
Confidence 4455543 4567789999999999999 78899999999999999999999999999999999999996 4599999
Q ss_pred eCCCeEEEEeCCCCCCcc--ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEE
Q 012799 169 SKAGELQCWDPQTGKPSG--NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCV 246 (456)
Q Consensus 169 ~~dg~i~vwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 246 (456)
+.||.|++||+.++.... ....+|...|.+++| +++++++|+.||.|++||+++++.+..+.+|...|.++
T Consensus 230 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 302 (435)
T 1p22_A 230 SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-------DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL 302 (435)
T ss_dssp ETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-------ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred eCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-------CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEE
Confidence 999999999999877542 357789999999998 45799999999999999999999999999999999999
Q ss_pred EeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccC
Q 012799 247 KWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326 (456)
Q Consensus 247 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (456)
.+++ ..+++|+.||.|++||+++++.+..+.+|...|.++++.
T Consensus 303 ~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~------------------------------------ 345 (435)
T 1p22_A 303 QYRD-RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD------------------------------------ 345 (435)
T ss_dssp EEET-TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECC------------------------------------
T ss_pred EeCC-CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEec------------------------------------
Confidence 9953 399999999999999999999999999999999999983
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCC--------CccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEE
Q 012799 327 NAPERLVSGSDDFTMFLWEPAVSKQ--------PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV 397 (456)
Q Consensus 327 ~~~~~l~~~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~ 397 (456)
+.++++|+.||.|++||+..... ....+.+|...|.+++| ++++|++|+.||.|++||+.+......
T Consensus 346 --~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 420 (435)
T 1p22_A 346 --NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQA 420 (435)
T ss_dssp --SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC---------
T ss_pred --CCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCccc
Confidence 44699999999999999765431 45567789999999999 788999999999999999988765443
No 110
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.9e-34 Score=262.58 Aligned_cols=243 Identities=13% Similarity=0.164 Sum_probs=196.0
Q ss_pred cccCCcccEEEEEECCCCCeEEEEE-----------CCCcEEEEeCCCCcceeEE---------ecCCCCEEEEEEcCCC
Q 012799 103 TIAGHTEAVLSVAFSPDGRQLASGS-----------GDTTVRLWDLNTQTPMFKC---------TGHKNWVLCIAWSADG 162 (456)
Q Consensus 103 ~l~~h~~~V~~~~~s~~~~~l~~~~-----------~d~~v~vwd~~~~~~~~~~---------~~~~~~v~~~~~~~~~ 162 (456)
.|.+|.+.|.+++++ ++.+++|+ .|+++++|++.+....... ..+...+.+++|+|||
T Consensus 68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg 145 (365)
T 4h5i_A 68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG 145 (365)
T ss_dssp ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence 577899999888775 45666653 5778999998765432221 2345668999999999
Q ss_pred CEEEEEe--CCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEE--ecC
Q 012799 163 KHLVSGS--KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC--LSG 238 (456)
Q Consensus 163 ~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~ 238 (456)
+++++++ .|++|++||+++++.... ..|...|.+++|+| +|+++++++.+ .+.+|+..+++.+.. ...
T Consensus 146 ~~la~as~~~d~~i~iwd~~~~~~~~~--~~~~~~V~~v~fsp-----dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~ 217 (365)
T 4h5i_A 146 TVAAIASSKVPAIMRIIDPSDLTEKFE--IETRGEVKDLHFST-----DGKVVAYITGS-SLEVISTVTGSCIARKTDFD 217 (365)
T ss_dssp SCEEEEESCSSCEEEEEETTTTEEEEE--EECSSCCCEEEECT-----TSSEEEEECSS-CEEEEETTTCCEEEEECCCC
T ss_pred CEEEEEECCCCCEEEEeECCCCcEEEE--eCCCCceEEEEEcc-----CCceEEeccce-eEEEEEeccCcceeeeecCC
Confidence 9987554 689999999999887653 34778899999999 99999999865 566777666665543 356
Q ss_pred cCccEEEEEeCCCC-eEEEEeCCC----cEEEEECCCCeE----EEEeecCCcceEEEEecCcceeeeccccCCCCccCC
Q 012799 239 HTLAVTCVKWGGDG-VIYTGSQDC----TIKVWETTQGKL----IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSS 309 (456)
Q Consensus 239 ~~~~v~~~~~~~~~-~l~~~~~dg----~i~iwd~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (456)
|...|.+++|+|++ .+++++.|+ .++.||+..... ...+..|...|++++|+|+
T Consensus 218 ~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spd----------------- 280 (365)
T 4h5i_A 218 KNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMK----------------- 280 (365)
T ss_dssp TTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTT-----------------
T ss_pred CCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCC-----------------
Confidence 88899999999999 888888877 688899877653 3456778899999999998
Q ss_pred hHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeC
Q 012799 310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389 (456)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~ 389 (456)
+++|++|+.|+.|++||+.+.+.....+.+|...|++++|+|||++||+|+.|++|+|||+
T Consensus 281 -------------------g~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 281 -------------------GELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp -------------------SCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred -------------------CCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 6679999999999999987766554556899999999999999999999999999999998
Q ss_pred CC
Q 012799 390 TT 391 (456)
Q Consensus 390 ~~ 391 (456)
..
T Consensus 342 p~ 343 (365)
T 4h5i_A 342 PL 343 (365)
T ss_dssp CT
T ss_pred CC
Confidence 64
No 111
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-35 Score=291.15 Aligned_cols=259 Identities=20% Similarity=0.316 Sum_probs=210.4
Q ss_pred eEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--CCccccccCcccceEEEEecccccCCCCCEEEEEeCCCc
Q 012799 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG--KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221 (456)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~ 221 (456)
..+.+|.+.|++++|+|++++|++|+.||.|++||+.++ +.. ..+.+|...|.+++|+|.. +++++++|+.||.
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~-~~l~~h~~~V~~l~~s~~~---~~~~l~s~s~Dg~ 78 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI-DTLTGHEGPVWRVDWAHPK---FGTILASCSYDGK 78 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEE-EEECCCSSCEEEEEECCTT---SCSEEEEEETTSC
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccc-eeccCCcCceEEEEecCCC---CCCEEEEEeCCCe
Confidence 456789999999999999999999999999999999743 333 3577899999999998821 2899999999999
Q ss_pred EEEEECCCCe--EEEEecCcCccEEEEEeCCC--C-eEEEEeCCCcEEEEECCCCe--EEEEeecCCcceEEEEecCcce
Q 012799 222 ARIWDVSLRK--CVICLSGHTLAVTCVKWGGD--G-VIYTGSQDCTIKVWETTQGK--LIRELKGHGHWVNSLALSTEYA 294 (456)
Q Consensus 222 i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~ 294 (456)
|++||+.+++ .+..+.+|...|.+++|+|+ + .+++|+.||.|++||++++. ....+..|...|.++.|+|...
T Consensus 79 I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 158 (753)
T 3jro_A 79 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 158 (753)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-
T ss_pred EEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccc
Confidence 9999999987 77788899999999999998 7 99999999999999998873 3455677899999999998521
Q ss_pred eeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC---CccccccccccEeEEEECCC
Q 012799 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ---PKTRMTGHQQLVNHVYFSPD 371 (456)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~sp~ 371 (456)
...+. ....+++..+++|+.||.|++||++.... ....+.+|...|++++|+|+
T Consensus 159 ~~~~~-----------------------~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 215 (753)
T 3jro_A 159 EEDGE-----------------------HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215 (753)
T ss_dssp -------------------------------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred ccccc-----------------------cccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccC
Confidence 10000 00011256799999999999999877643 34456789999999999999
Q ss_pred ---CCEEEEEECCCcEEEEeCCCCe-----EEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCe
Q 012799 372 ---GQWVASASFDKSIKLWNGTTGK-----FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL 443 (456)
Q Consensus 372 ---~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 443 (456)
+++|++|+.||.|++||+.+++ .+.....|...|+++ +|+|+|++
T Consensus 216 ~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l---------------------------~~spdg~~ 268 (753)
T 3jro_A 216 VLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA---------------------------SWSLSGNV 268 (753)
T ss_dssp CSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCE---------------------------EECTTTCC
T ss_pred CCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEE---------------------------EEcCCCCE
Confidence 8999999999999999998864 233334577788888 99999999
Q ss_pred EEEeeCCCceEEC
Q 012799 444 LLSGSKDSTLKVT 456 (456)
Q Consensus 444 l~s~s~Dg~v~iW 456 (456)
|++|+.||.|+||
T Consensus 269 l~s~s~Dg~I~vw 281 (753)
T 3jro_A 269 LALSGGDNKVTLW 281 (753)
T ss_dssp EEEECSSSCEECC
T ss_pred EEEEcCCCEEEEE
Confidence 9999999999999
No 112
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=271.44 Aligned_cols=255 Identities=15% Similarity=0.289 Sum_probs=199.1
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC----------ccccccCcc------------cceEEEEecccc
Q 012799 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP----------SGNPLSGHK------------KWITGISWEPVH 205 (456)
Q Consensus 148 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~----------~~~~~~~~~------------~~v~~~~~~~~~ 205 (456)
.+.+.|++++|+|++++|++|+.||.|++||+.+++. ....+.+|. ..|.+++|+|
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~-- 103 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP-- 103 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC--
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC--
Confidence 3678999999999999999999999999999988762 223566787 8899999999
Q ss_pred cCCCC--CEEEEEeCCCcEEEEECCCCeEE---------------------------------------EE-ecCcCccE
Q 012799 206 LNAPC--RRFVSASKDGDARIWDVSLRKCV---------------------------------------IC-LSGHTLAV 243 (456)
Q Consensus 206 ~~~~~--~~l~~~~~dg~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v 243 (456)
++ ..|++++.|+.|++||+.++... .. ..+|...|
T Consensus 104 ---~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 180 (447)
T 3dw8_B 104 ---QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI 180 (447)
T ss_dssp ---CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred ---CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence 66 79999999999999999765432 12 36799999
Q ss_pred EEEEeCCCC-eEEEEeCCCcEEEEECCC-CeEEE-------EeecCCcceEEEEecCcceeeeccccCCCCccCChHHHH
Q 012799 244 TCVKWGGDG-VIYTGSQDCTIKVWETTQ-GKLIR-------ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK 314 (456)
Q Consensus 244 ~~~~~~~~~-~l~~~~~dg~i~iwd~~~-~~~~~-------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (456)
.+++|+|++ .|++| .||.|++||+++ ++.+. .+..|...|.+++|+|++
T Consensus 181 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--------------------- 238 (447)
T 3dw8_B 181 NSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNS--------------------- 238 (447)
T ss_dssp CEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSC---------------------
T ss_pred EEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCC---------------------
Confidence 999999999 77777 899999999994 44444 255788999999999982
Q ss_pred HHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC---ccccccccc------------cEeEEEECCCCCEEEEEE
Q 012799 315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP---KTRMTGHQQ------------LVNHVYFSPDGQWVASAS 379 (456)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~------------~v~~~~~sp~~~~l~s~~ 379 (456)
..++++|+.||.|++||++..... ...+..|.. .|.+++|+|+|++|++++
T Consensus 239 --------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 304 (447)
T 3dw8_B 239 --------------CNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD 304 (447)
T ss_dssp --------------TTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE
T ss_pred --------------CcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee
Confidence 267999999999999998876542 455666665 899999999999999999
Q ss_pred CCCcEEEEeCCC-CeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 380 FDKSIKLWNGTT-GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 380 ~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
. |.|++||+++ ++++..+.+|...+..+.. ....+.-..+..++|+|++++|++|+.||.|+||
T Consensus 305 ~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iw 369 (447)
T 3dw8_B 305 Y-LSVKVWDLNMENRPVETYQVHEYLRSKLCS------------LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMF 369 (447)
T ss_dssp S-SEEEEEETTCCSSCSCCEESCGGGTTTHHH------------HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEE
T ss_pred C-CeEEEEeCCCCccccceeeccccccccccc------------cccccccccceEEEECCCCCEEEEeccCCEEEEE
Confidence 8 9999999997 8888888888643221000 0000000001113899999999999999999998
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=9.2e-33 Score=258.53 Aligned_cols=281 Identities=15% Similarity=0.129 Sum_probs=231.8
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCccee-----EEecCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 012799 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-----KCTGHKNWVLCIAWSADGKHLVSGSKAGELQC 176 (456)
Q Consensus 102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v 176 (456)
..+..+. .+.+++|+|++.++++++.++.|++||+.+++... .+.+|...|.+++|+++++++++++.|+.|++
T Consensus 117 ~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~ 195 (433)
T 3bws_A 117 SRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHV 195 (433)
T ss_dssp EEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEE
T ss_pred EEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEE
Confidence 3444443 45699999988888888889999999999988776 34578899999999999999999999999999
Q ss_pred EeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEE-eCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eE
Q 012799 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA-SKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI 254 (456)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l 254 (456)
||+++++... .+..|...+.+++|+| +++.++++ +.|+.|++||+++++.+..+..+ ..+.+++|+|++ .+
T Consensus 196 ~d~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l 268 (433)
T 3bws_A 196 FDLKTLAYKA-TVDLTGKWSKILLYDP-----IRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKEL 268 (433)
T ss_dssp EETTTCCEEE-EEECSSSSEEEEEEET-----TTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEE
T ss_pred EECCCceEEE-EEcCCCCCeeEEEEcC-----CCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEE
Confidence 9999887665 4557888999999999 88877554 47999999999999988887654 458999999999 77
Q ss_pred EEEe--------CCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccC
Q 012799 255 YTGS--------QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326 (456)
Q Consensus 255 ~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (456)
++++ .||.|++||+++++.+..+. +...+..++++|++
T Consensus 269 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g--------------------------------- 314 (433)
T 3bws_A 269 YIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTE--------------------------------- 314 (433)
T ss_dssp EEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSST---------------------------------
T ss_pred EEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCC---------------------------------
Confidence 7777 48899999999998877664 45578889999873
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEEC---------------CCcEEEEeCCC
Q 012799 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF---------------DKSIKLWNGTT 391 (456)
Q Consensus 327 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~---------------dg~i~iwd~~~ 391 (456)
...+++++.++.|++||+.... ....+ .+...+.+++|+|+|++|++++. ||.|++||+.+
T Consensus 315 --~~l~~~~~~~~~v~v~d~~~~~-~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 315 --NKIYVSDMCCSKIEVYDLKEKK-VQKSI-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp --TEEEEEETTTTEEEEEETTTTE-EEEEE-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred --CEEEEEecCCCEEEEEECCCCc-EEEEe-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence 1246777899999999987543 33333 36677999999999999888876 57999999999
Q ss_pred CeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC-CCceEEC
Q 012799 392 GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DSTLKVT 456 (456)
Q Consensus 392 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~-Dg~v~iW 456 (456)
++.+..+..+ ..+.++ +|+|+|++|++++. |+.|++|
T Consensus 391 ~~~~~~~~~~-~~~~~~---------------------------~~s~dg~~l~~~~~~d~~i~v~ 428 (433)
T 3bws_A 391 DTVKEFWEAG-NQPTGL---------------------------DVSPDNRYLVISDFLDHQIRVY 428 (433)
T ss_dssp TEEEEEEECS-SSEEEE---------------------------EECTTSCEEEEEETTTTEEEEE
T ss_pred CcEEEEecCC-CCCceE---------------------------EEcCCCCEEEEEECCCCeEEEE
Confidence 9999888864 467888 89999999998875 9999998
No 114
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=5.9e-34 Score=257.92 Aligned_cols=239 Identities=15% Similarity=0.124 Sum_probs=208.5
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC--ccccccCcccceEEEEecccccCCCCC-EEEEEeCCCcE
Q 012799 146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP--SGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDA 222 (456)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~-~l~~~~~dg~i 222 (456)
..+|.+.|.+++|+|++++|++++.||.|++|++.+++. .......|...|.+++|+| +++ ++++++.||.|
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-----NTDLQIYVGTVQGEI 81 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-----SSSEEEEEEETTSCE
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC-----CCCcEEEEEcCCCeE
Confidence 347999999999999999999999999999999988771 1123558899999999999 889 99999999999
Q ss_pred EEEEC-CCCeEEEEecC--cCccEEEEEeCCCCeEEEEeCCCcEEEEECCC---------CeEEEEeecCCcceEEEEec
Q 012799 223 RIWDV-SLRKCVICLSG--HTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQ---------GKLIRELKGHGHWVNSLALS 290 (456)
Q Consensus 223 ~iwd~-~~~~~~~~~~~--~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~~~~~ 290 (456)
++||+ .+++. ..+.+ |...|.+++|+|...+++++.||.|++||+++ ++++..+. +...+.+++++
T Consensus 82 ~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~ 159 (342)
T 1yfq_A 82 LKVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTN 159 (342)
T ss_dssp EEECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEEC
T ss_pred EEEEeccCCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEec
Confidence 99999 77754 67778 99999999999933999999999999999987 66666666 78889999998
Q ss_pred CcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCC-CCC-CccccccccccEeEEEE
Q 012799 291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV-SKQ-PKTRMTGHQQLVNHVYF 368 (456)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~-~~~~~~~~~~~v~~~~~ 368 (456)
++. +++++.|+.|++||++. ... .......|...+.+++|
T Consensus 160 ~~~--------------------------------------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~ 201 (342)
T 1yfq_A 160 SSR--------------------------------------LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVAL 201 (342)
T ss_dssp SSE--------------------------------------EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEE
T ss_pred CCc--------------------------------------EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEE
Confidence 762 89999999999999887 443 33345578889999999
Q ss_pred CC-CCCEEEEEECCCcEEEEeCCCC------eEEEEEecccc---------cEEEEEeeeeeeecCCCCceeeecccccc
Q 012799 369 SP-DGQWVASASFDKSIKLWNGTTG------KFVAVFRGHVG---------PVYQIRFELIYCFRYPSNFYCVVDMSCCM 432 (456)
Q Consensus 369 sp-~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~---------~v~~i~~~~~~~~~~~~~~~~~~~~~~~~ 432 (456)
+| +++++++++.||.|++|++... +....+..|.. .|.++
T Consensus 202 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------------------------ 257 (342)
T 1yfq_A 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI------------------------ 257 (342)
T ss_dssp CSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEE------------------------
T ss_pred CCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEE------------------------
Confidence 99 9999999999999999999887 77888888865 89998
Q ss_pred cceeEecCCCeEEEeeCCCceEEC
Q 012799 433 SLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 433 ~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+|+|++++|++|+.||.|++|
T Consensus 258 ---~~s~~~~~l~~~~~dg~i~vw 278 (342)
T 1yfq_A 258 ---EFSPRHKFLYTAGSDGIISCW 278 (342)
T ss_dssp ---EECTTTCCEEEEETTSCEEEE
T ss_pred ---EEcCCCCEEEEecCCceEEEE
Confidence 899999999999999999998
No 115
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=6.4e-34 Score=262.09 Aligned_cols=254 Identities=12% Similarity=0.103 Sum_probs=171.9
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCCCc----cccccCcccceEEEEeccccc---CCCCCEEEEEeCCCcEEEEECCCCe
Q 012799 159 SADGKHLVSGSKAGELQCWDPQTGKPS----GNPLSGHKKWITGISWEPVHL---NAPCRRFVSASKDGDARIWDVSLRK 231 (456)
Q Consensus 159 ~~~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~---~~~~~~l~~~~~dg~i~iwd~~~~~ 231 (456)
.+++.+|++++.|++|++||.++++.. ...+.+|...|.+++|+|... ..++++|++++.|++|++||++++.
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~ 177 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG 177 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc
Confidence 345668999999999999999887542 235789999999999998432 1267899999999999999999998
Q ss_pred EEEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCc----ceEEEEecCcceeeeccccCCCC
Q 012799 232 CVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGH----WVNSLALSTEYALRTGAFDHTGK 305 (456)
Q Consensus 232 ~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~ 305 (456)
++..+..|..++.+++|+|++ +|++++.||+|++||+++++.......+.. .+......+....... ......
T Consensus 178 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~ 256 (393)
T 4gq1_A 178 PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS-SGIASS 256 (393)
T ss_dssp EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-------CCSSS
T ss_pred eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec-cccccc
Confidence 888888899999999999987 799999999999999998876554432221 1111111111000000 000000
Q ss_pred ccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeE------------------EE
Q 012799 306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH------------------VY 367 (456)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~------------------~~ 367 (456)
. .......+++..+++++.|+.+++||+..... ...+..|...+.. ..
T Consensus 257 v-------------~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (393)
T 4gq1_A 257 L-------------ANVRWIGSDGSGILAMCKSGAWLRWNLFANND-YNEISDSTMKLGPKNLLPNVQGISLFPSLLGAC 322 (393)
T ss_dssp C-------------SEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCE
T ss_pred c-------------eeeeeecCCCCEEEEEeCCCCEEEEECccCCC-CceEeeecCccccEEEccccccccccCcceeEE
Confidence 0 00001234578899999999999999865432 2222233332222 23
Q ss_pred ECC--CCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEE
Q 012799 368 FSP--DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL 445 (456)
Q Consensus 368 ~sp--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 445 (456)
++| ++.++++|+.||.|++||+.+++.+..+.+|..+|.++ +|+|||++||
T Consensus 323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~sv---------------------------afspdG~~LA 375 (393)
T 4gq1_A 323 PHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDF---------------------------CWHQDGSHLA 375 (393)
T ss_dssp ECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEE---------------------------EECTTSSEEE
T ss_pred EccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEE---------------------------EEcCCCCEEE
Confidence 333 44467888899999999999999988888999999999 9999999999
Q ss_pred EeeCCCceE
Q 012799 446 SGSKDSTLK 454 (456)
Q Consensus 446 s~s~Dg~v~ 454 (456)
+++.||.+.
T Consensus 376 ~as~~Gv~l 384 (393)
T 4gq1_A 376 IATEGSVLL 384 (393)
T ss_dssp EEESSEEEE
T ss_pred EEeCCCeEE
Confidence 999988743
No 116
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=4.5e-33 Score=252.84 Aligned_cols=243 Identities=17% Similarity=0.163 Sum_probs=183.1
Q ss_pred EEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEE
Q 012799 134 LWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213 (456)
Q Consensus 134 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l 213 (456)
+|++.+.+++.....|...|.+++|+|||++|++|+.++ +++|++++++... ..+...+..+.+.+ +++.+
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~ 73 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM---SQEMRHLSKVRMLH-----RTNYV 73 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE---EEECSCCCEEEECT-----TSSEE
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee---eeecCCeEEEEEcC-----CCCEE
Confidence 566777777777889999999999999999999998775 7899988765443 12222466777776 55666
Q ss_pred -EEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCC-eEEEEeecCCcceEEEEecC
Q 012799 214 -VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALST 291 (456)
Q Consensus 214 -~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~ 291 (456)
++++.|+.|++||..+++++..+. +...|.+++++++..++ + .++.|++||+.++ +.+..+.. +...+++++
T Consensus 74 ~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~-~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~ 147 (355)
T 3vu4_A 74 AFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVV-S-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN 147 (355)
T ss_dssp EEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEE-E-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET
T ss_pred EEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEE-E-EcCEEEEEECCCCceeeEEecc---CCceEEEEc
Confidence 567888999999999999998886 66799999999875333 3 4789999999987 66555543 233334443
Q ss_pred cceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE--EeCCCcEEEEecCCCC--------------CC-cc
Q 012799 292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS--GSDDFTMFLWEPAVSK--------------QP-KT 354 (456)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~--------------~~-~~ 354 (456)
. ++++ |+.||.|++||+.... .+ ..
T Consensus 148 ~--------------------------------------~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~ 189 (355)
T 3vu4_A 148 G--------------------------------------LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGV 189 (355)
T ss_dssp T--------------------------------------EEEEEESSCTTCEEEEECCC------------------CCE
T ss_pred c--------------------------------------EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccE
Confidence 2 2444 6899999999987654 12 56
Q ss_pred ccccccccEeEEEECCCCCEEEEEECCCc-EEEEeCCCCeEEEEEe-c-ccccEEEEEeeeeeeecCCCCceeeeccccc
Q 012799 355 RMTGHQQLVNHVYFSPDGQWVASASFDKS-IKLWNGTTGKFVAVFR-G-HVGPVYQIRFELIYCFRYPSNFYCVVDMSCC 431 (456)
Q Consensus 355 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~-~-~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ 431 (456)
.+.+|...|++++|+|+|++|++|+.||+ |++||+++++++..+. + |...|+++
T Consensus 190 ~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~----------------------- 246 (355)
T 3vu4_A 190 LIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDM----------------------- 246 (355)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEE-----------------------
T ss_pred EEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEE-----------------------
Confidence 67899999999999999999999999998 9999999999999998 5 99999999
Q ss_pred ccceeEecCCCeEEEeeCCCceEEC
Q 012799 432 MSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 432 ~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+|+|||++|++++.|++|+||
T Consensus 247 ----~~s~~~~~l~s~s~d~~v~iw 267 (355)
T 3vu4_A 247 ----KWSTDGSKLAVVSDKWTLHVF 267 (355)
T ss_dssp ----EECTTSCEEEEEETTCEEEEE
T ss_pred ----EECCCCCEEEEEECCCEEEEE
Confidence 999999999999999999999
No 117
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.3e-32 Score=249.58 Aligned_cols=264 Identities=17% Similarity=0.227 Sum_probs=192.1
Q ss_pred ccccccCCcccEEEEEECC--CCCeEEEEECCCcEEEEeCCCC---------cceeEEecCCCCEEEEEEcCC--CCEEE
Q 012799 100 CSATIAGHTEAVLSVAFSP--DGRQLASGSGDTTVRLWDLNTQ---------TPMFKCTGHKNWVLCIAWSAD--GKHLV 166 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~--~~~~l~~~~~d~~v~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~ 166 (456)
....+.+|...|++++|+| ++++|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|+ +++|+
T Consensus 49 ~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 128 (351)
T 3f3f_A 49 LSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA 128 (351)
T ss_dssp EEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred ecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEE
Confidence 5667789999999999999 6999999999999999999886 457778899999999999999 99999
Q ss_pred EEeCCCeEEEEeCCCCCCcccc------------ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE--
Q 012799 167 SGSKAGELQCWDPQTGKPSGNP------------LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-- 232 (456)
Q Consensus 167 s~~~dg~i~vwd~~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-- 232 (456)
+++.||.|++||+++++..... ...|...+.++.|+|..+ ++..+++++.++.+.+|+...++.
T Consensus 129 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~ 206 (351)
T 3f3f_A 129 CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRF--SPEKLAVSALEQAIIYQRGKDGKLHV 206 (351)
T ss_dssp EEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSS--SCCEEEEEETTEEEEEEECTTSCEEE
T ss_pred EecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCC--CCcEEEEecCCCcEEEEccCCCceee
Confidence 9999999999999988754422 126788899999999322 378999999999998888877765
Q ss_pred EEEecCcCccEEEEEeCCCC-----eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCcc
Q 012799 233 VICLSGHTLAVTCVKWGGDG-----VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQY 307 (456)
Q Consensus 233 ~~~~~~~~~~v~~~~~~~~~-----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 307 (456)
+..+.+|...|++++|+|++ .|++++.||.|++||++++...................+.....
T Consensus 207 ~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 275 (351)
T 3f3f_A 207 AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMD----------- 275 (351)
T ss_dssp EEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------
T ss_pred eeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccc-----------
Confidence 67788899999999999995 79999999999999998765444333222222222222211000
Q ss_pred CChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEE
Q 012799 308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387 (456)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw 387 (456)
......+.....+.+|+.. .......+.+|...|++++|+|++++|++|+.||.|++|
T Consensus 276 ---------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw 333 (351)
T 3f3f_A 276 ---------------------AQGRSDSNTEEKAELQSNL-QVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333 (351)
T ss_dssp ------------------------------------CCSE-EEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEE
T ss_pred ---------------------cccccccccceeeeecccc-cccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEE
Confidence 0011222333444555422 223455677899999999999999999999999999999
Q ss_pred eCCCCeEEEEE
Q 012799 388 NGTTGKFVAVF 398 (456)
Q Consensus 388 d~~~~~~~~~~ 398 (456)
|+.+++.+..+
T Consensus 334 ~~~~~~~~~~~ 344 (351)
T 3f3f_A 334 KATYSNEFKCM 344 (351)
T ss_dssp EECTTSCEEEE
T ss_pred ecCcCcchhhe
Confidence 99987655444
No 118
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=5.3e-32 Score=234.34 Aligned_cols=284 Identities=17% Similarity=0.134 Sum_probs=192.1
Q ss_pred cEEEEEECCCCC---eEEEEECCCcEEEEeCCCC---cceeEEecCCCCEEEEEEcCCCCEEEEEeC-C---CeEEEEeC
Q 012799 110 AVLSVAFSPDGR---QLASGSGDTTVRLWDLNTQ---TPMFKCTGHKNWVLCIAWSADGKHLVSGSK-A---GELQCWDP 179 (456)
Q Consensus 110 ~V~~~~~s~~~~---~l~~~~~d~~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d---g~i~vwd~ 179 (456)
.+.++.|-.-|. .+++++. ..|++|+..++ +.++++.+|+.+|..+.+.||..-|+.... + +.|+..-+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~ 119 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC 119 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence 455666655443 5677765 48999999998 788999999999999999886443322211 1 11211111
Q ss_pred CCC----CCccccccCcccceEEEEecccccCCCCCEEEEEe--CCCcEEEEEC-CCCeEEEEecCcCccEEEEEeCC--
Q 012799 180 QTG----KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS--KDGDARIWDV-SLRKCVICLSGHTLAVTCVKWGG-- 250 (456)
Q Consensus 180 ~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~-~~~~~~~~~~~~~~~v~~~~~~~-- 250 (456)
... .... ...+|...|.++ + +++.+.+++ .|+.|++|++ ..++.+..+..|...++.++|++
T Consensus 120 spd~~~~~~~l-~s~g~~~~v~~l---~-----~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~ 190 (356)
T 2w18_A 120 SSDDESEKQVL-LKSGNIKAVLGL---T-----KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ 190 (356)
T ss_dssp ------CCEEE-EEEEEEEEEEEE---T-----TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEE
T ss_pred CCCccccccEE-EeCCCeEEEEec---C-----CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccC
Confidence 111 0000 112333334333 2 455555533 5999999999 45888888888998898889888
Q ss_pred -CC-eEEEEeCCCcEEEEECCCCeEEEEeecCCc---ceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhcc
Q 012799 251 -DG-VIYTGSQDCTIKVWETTQGKLIRELKGHGH---WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325 (456)
Q Consensus 251 -~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (456)
++ .|++++.|++|++||+.+++.++++.+|.. .+.+++|+|++.+.........
T Consensus 191 g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~--------------------- 249 (356)
T 2w18_A 191 GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA--------------------- 249 (356)
T ss_dssp TSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-------------------------
T ss_pred CCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC---------------------
Confidence 55 899999999999999999999999986543 5777789998765433221110
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCCCCCccc----cccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecc
Q 012799 326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTR----MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH 401 (456)
Q Consensus 326 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 401 (456)
...+++|+.|++|++||..++...... ..+|...+.+..++ +.++++|+.||+|+|||+.+++++.++.+|
T Consensus 250 ---~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH 324 (356)
T 2w18_A 250 ---KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPV 324 (356)
T ss_dssp -----------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred ---cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCC
Confidence 113789999999999997765432211 13666555544443 789999999999999999999999999999
Q ss_pred cccEE-EEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 402 VGPVY-QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 402 ~~~v~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
...+. .+ +|+|||++|++|+.|++||||
T Consensus 325 ~~~vvs~v---------------------------afSPDG~~LaSGS~D~TIklW 353 (356)
T 2w18_A 325 SDQHWSFV---------------------------KWSGTDSHLLAGQKDGNIFVY 353 (356)
T ss_dssp --CCCCEE---------------------------EECSSSSEEEEECTTSCEEEE
T ss_pred CCCeEEEE---------------------------EECCCCCEEEEEECCCcEEEe
Confidence 87655 47 899999999999999999999
No 119
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=5e-32 Score=247.70 Aligned_cols=250 Identities=19% Similarity=0.288 Sum_probs=207.3
Q ss_pred EeCCCCcceeEEecCCCCEEEEEEcCC---CCEEEEEeCCCeEEEEeCCC-CCCccccccCcccceEEEEecccccCCCC
Q 012799 135 WDLNTQTPMFKCTGHKNWVLCIAWSAD---GKHLVSGSKAGELQCWDPQT-GKPSGNPLSGHKKWITGISWEPVHLNAPC 210 (456)
Q Consensus 135 wd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 210 (456)
|+....+.+..+.+|...|++++|+|+ |++|++|+.||.|++||+.+ +......+.+|...|.+++|+| ++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~ 98 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-----DG 98 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT-----TS
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc-----CC
Confidence 455566777788899999999999998 69999999999999999998 5554356788999999999999 89
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEe--CCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEE
Q 012799 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW--GGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSL 287 (456)
Q Consensus 211 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 287 (456)
++|++++.||.|++||+++++.+. +..|...|.+++| ++++ .+++++.||.|++||+++++.+..+..+. .+.++
T Consensus 99 ~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~ 176 (368)
T 3mmy_A 99 SKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCA 176 (368)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEE
T ss_pred CEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEE
Confidence 999999999999999999998776 4569999999999 8888 89999999999999999999888887654 45555
Q ss_pred EecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccc-ccccccEeEE
Q 012799 288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHV 366 (456)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~ 366 (456)
.+.+. .+++++.++.+.+|+++......... ..+...+.++
T Consensus 177 ~~~~~--------------------------------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (368)
T 3mmy_A 177 DVIYP--------------------------------------MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCV 218 (368)
T ss_dssp EEETT--------------------------------------EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEE
T ss_pred EecCC--------------------------------------eeEEEeCCCcEEEEEeccccchhhhccccccCCCceE
Confidence 55433 48889999999999987654333222 2233445566
Q ss_pred EECCCCCE----EEEEECCCcEEEEeCCCC---eEEEEEecccc------------cEEEEEeeeeeeecCCCCceeeec
Q 012799 367 YFSPDGQW----VASASFDKSIKLWNGTTG---KFVAVFRGHVG------------PVYQIRFELIYCFRYPSNFYCVVD 427 (456)
Q Consensus 367 ~~sp~~~~----l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~------------~v~~i~~~~~~~~~~~~~~~~~~~ 427 (456)
++.++... +++++.||.|++||+... +.+..+.+|.. +|.++
T Consensus 219 ~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------------- 279 (368)
T 3mmy_A 219 AIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGI------------------- 279 (368)
T ss_dssp EEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEE-------------------
T ss_pred EEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEE-------------------
Confidence 66554443 999999999999999987 66778888877 68888
Q ss_pred ccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 428 MSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 428 ~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+|+|++++|++|+.||.|+||
T Consensus 280 --------~~sp~~~~l~s~~~dg~i~iw 300 (368)
T 3mmy_A 280 --------AFHPVHGTLATVGSDGRFSFW 300 (368)
T ss_dssp --------EECTTTCCEEEEETTSCEEEE
T ss_pred --------EEecCCCEEEEEccCCeEEEE
Confidence 999999999999999999998
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=8.1e-31 Score=241.91 Aligned_cols=260 Identities=12% Similarity=0.141 Sum_probs=214.4
Q ss_pred CeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCCccccccCcccceEEE
Q 012799 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI 199 (456)
Q Consensus 121 ~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 199 (456)
.++++++.|+.|++||+.+++.+..+..|. .+.+++|+|+++++ ++++.|+.|++||+.+++.... +.. ...+.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~-~~~-~~~v~~~ 79 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-VPA-GSSPQGV 79 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-EEC-SSSEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE-EEC-CCCccce
Confidence 467888899999999999999888888665 58999999999977 5677899999999998887653 332 3389999
Q ss_pred EecccccCCCCCEEEEE-eCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eE-EEEeCCCcEEEEECCCCeEEEE
Q 012799 200 SWEPVHLNAPCRRFVSA-SKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI-YTGSQDCTIKVWETTQGKLIRE 276 (456)
Q Consensus 200 ~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~~~~~dg~i~iwd~~~~~~~~~ 276 (456)
+|+| ++++++++ +.++.|++||+.+++.+..+..+ ..+.+++|+|++ .+ ++++.++.|++||+.+++.+..
T Consensus 80 ~~sp-----dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 153 (391)
T 1l0q_A 80 AVSP-----DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT 153 (391)
T ss_dssp EECT-----TSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EECC-----CCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 9999 88877655 46799999999999988887654 568999999998 55 6778899999999999999888
Q ss_pred eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE-EEEeCCCcEEEEecCCCCCCccc
Q 012799 277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VSGSDDFTMFLWEPAVSKQPKTR 355 (456)
Q Consensus 277 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~ 355 (456)
+..+ ..+..++++|+ ++.+ ++++.++.|++||++... ....
T Consensus 154 ~~~~-~~~~~~~~~~d------------------------------------g~~l~~~~~~~~~v~~~d~~~~~-~~~~ 195 (391)
T 1l0q_A 154 VSVG-RSPKGIAVTPD------------------------------------GTKVYVANFDSMSISVIDTVTNS-VIDT 195 (391)
T ss_dssp EECC-SSEEEEEECTT------------------------------------SSEEEEEETTTTEEEEEETTTTE-EEEE
T ss_pred EecC-CCcceEEECCC------------------------------------CCEEEEEeCCCCEEEEEECCCCe-EEEE
Confidence 8755 45689999988 4445 677889999999987653 2222
Q ss_pred cccccccEeEEEECCCCCEEEEEE---CCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccc
Q 012799 356 MTGHQQLVNHVYFSPDGQWVASAS---FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCM 432 (456)
Q Consensus 356 ~~~~~~~v~~~~~sp~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~ 432 (456)
..+...+.+++|+|++++|++++ .++.|++||+.+++.+..+..|.. +.++
T Consensus 196 -~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~------------------------ 249 (391)
T 1l0q_A 196 -VKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGI------------------------ 249 (391)
T ss_dssp -EECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-EEEE------------------------
T ss_pred -EecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC-ccEE------------------------
Confidence 23556789999999999998887 689999999999999988887654 5777
Q ss_pred cceeEecCCCeE-EEeeCCCceEEC
Q 012799 433 SLYSWSADSRLL-LSGSKDSTLKVT 456 (456)
Q Consensus 433 ~~~~~s~dg~~l-~s~s~Dg~v~iW 456 (456)
+|+|+|++| ++++.|+.|++|
T Consensus 250 ---~~s~dg~~l~~s~~~d~~v~v~ 271 (391)
T 1l0q_A 250 ---AVTPDGKKVYVALSFXNTVSVI 271 (391)
T ss_dssp ---EECTTSSEEEEEETTTTEEEEE
T ss_pred ---EEccCCCEEEEEcCCCCEEEEE
Confidence 899999977 677889999998
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.8e-32 Score=252.48 Aligned_cols=264 Identities=16% Similarity=0.069 Sum_probs=180.4
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce-----eEEecCCCCEEEEEEcC--------CCCEEEEE
Q 012799 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-----FKCTGHKNWVLCIAWSA--------DGKHLVSG 168 (456)
Q Consensus 102 ~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~-----~~~~~~~~~v~~~~~~~--------~~~~l~s~ 168 (456)
.....|...+....+++++.+||+|+.|++|+|||..+++.. ..+.+|.+.|.+++|+| |+++||+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~ 162 (393)
T 4gq1_A 83 YSENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASV 162 (393)
T ss_dssp EECC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEE
T ss_pred ccccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEE
Confidence 344567777777777888899999999999999999887543 33568999999999998 78999999
Q ss_pred eCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCC-CEEEEEeCCCcEEEEECCCCeEEEE------------
Q 012799 169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPC-RRFVSASKDGDARIWDVSLRKCVIC------------ 235 (456)
Q Consensus 169 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~------------ 235 (456)
+.|++|+|||+.++.... ....|...+.+++|+| ++ .+|++++.||.|++||+++++....
T Consensus 163 s~D~tv~~Wd~~~~~~~~-~~~~~~~~v~~v~~~p-----~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~ 236 (393)
T 4gq1_A 163 GDDCTLIIWRLTDEGPIL-AGYPLSSPGISVQFRP-----SNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWL 236 (393)
T ss_dssp ETTSEEEEEEEETTEEEE-EEEECSSCEEEEEEET-----TEEEEEEEEETTSEEEEEETTCCC----------CSCCCS
T ss_pred ECCCeEEEEECCCCceee-eecCCCCCcEEEEECC-----CCCceEEecCCCCEEEEEECCCCcccccccccCCcccceE
Confidence 999999999998876654 4667888999999999 55 4799999999999999987754332
Q ss_pred -------------ecCcCccEEEEEeC-CCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccc
Q 012799 236 -------------LSGHTLAVTCVKWG-GDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF 300 (456)
Q Consensus 236 -------------~~~~~~~v~~~~~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 300 (456)
..+|...+.++.|. +++ .+++++.|+++++||+..++....+..+...+..+.+.++........
T Consensus 237 ~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (393)
T 4gq1_A 237 LTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFP 316 (393)
T ss_dssp EEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSC
T ss_pred EecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccC
Confidence 23566778889886 677 899999999999999999988888888888888888887654322111
Q ss_pred cCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEEC
Q 012799 301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380 (456)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~ 380 (456)
......+ ....++.++++|+.||.|++||+..+.. .....+|..+|++++|+|||++||+++.
T Consensus 317 ~~~~~~~----------------~~~~~~~~~~sgs~Dg~V~lwd~~~~~~-~~~~~~~~~~V~svafspdG~~LA~as~ 379 (393)
T 4gq1_A 317 SLLGACP----------------HPRYMDYFATAHSQHGLIQLINTYEKDS-NSIPIQLGMPIVDFCWHQDGSHLAIATE 379 (393)
T ss_dssp CSSCCEE----------------CSSCTTEEEEEETTTTEEEEEETTCTTC-CEEEEECSSCEEEEEECTTSSEEEEEES
T ss_pred cceeEEE----------------ccCCCCEEEEEECCCCEEEEEECCCCcE-EEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 1100000 0112344677888999999999876654 4445678889999999999999999997
Q ss_pred CCcEEEEeC
Q 012799 381 DKSIKLWNG 389 (456)
Q Consensus 381 dg~i~iwd~ 389 (456)
+| +.+|.+
T Consensus 380 ~G-v~lvrL 387 (393)
T 4gq1_A 380 GS-VLLTRL 387 (393)
T ss_dssp SE-EEEEEE
T ss_pred CC-eEEEEE
Confidence 76 666654
No 122
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-31 Score=248.99 Aligned_cols=245 Identities=15% Similarity=0.128 Sum_probs=201.7
Q ss_pred cccCCcccEEEEEECCCCCeE-EEEECCCcEEEEeCC--CCcceeEEe--cCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 012799 103 TIAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLN--TQTPMFKCT--GHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (456)
Q Consensus 103 ~l~~h~~~V~~~~~s~~~~~l-~~~~~d~~v~vwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 177 (456)
...+|.+.|++++|+|++++| ++|+.||.|++||+. +++.+..+. .|...|.+++|+|++++|++|+.+|.|++|
T Consensus 97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence 456899999999999999996 889899999999999 888887776 577899999999999999999999999999
Q ss_pred eCCCCCCcc---ccccCcccceEEEEecccccCCC---CCEEEEEeCCCcEEEEECCCCeEEEE-ecCcCccEEEEEeCC
Q 012799 178 DPQTGKPSG---NPLSGHKKWITGISWEPVHLNAP---CRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGG 250 (456)
Q Consensus 178 d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~ 250 (456)
++.+++... ..+.+|...|.+++|+| + +.+|++++.|+.|++||+++++.+.. +.+|...|.+++|+
T Consensus 177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-----~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s- 250 (450)
T 2vdu_B 177 DINSIPEEKFTQEPILGHVSMLTDVHLIK-----DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG- 250 (450)
T ss_dssp ETTSCCCSSCCCCCSEECSSCEEEEEEEE-----CTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-
T ss_pred ecCCcccccccceeeecccCceEEEEEcC-----CCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-
Confidence 998876532 24678999999999999 7 88999999999999999999988877 56899999999999
Q ss_pred CC-eEEEEeCCCcEEEEECCCCeEEEEeecC-------------------------CcceEEEEecCcceeeeccccCCC
Q 012799 251 DG-VIYTGSQDCTIKVWETTQGKLIRELKGH-------------------------GHWVNSLALSTEYALRTGAFDHTG 304 (456)
Q Consensus 251 ~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------------------~~~i~~~~~~~~~~~~~~~~~~~~ 304 (456)
++ .|++++.|+.|++||+++++.+..+..+ ...+..++++|+
T Consensus 251 d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~------------ 318 (450)
T 2vdu_B 251 KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN------------ 318 (450)
T ss_dssp STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS------------
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC------------
Confidence 88 9999999999999999999988887632 235667777776
Q ss_pred CccCChHHHHHHHHhhhhhccCCCCCEEEEEe-CCCcEEEEec--CCCC--CCccccccccccEeEEEECCCCCEEEEEE
Q 012799 305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGS-DDFTMFLWEP--AVSK--QPKTRMTGHQQLVNHVYFSPDGQWVASAS 379 (456)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~--~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 379 (456)
+.++++++ .++.|++|++ .... .....+..| ..|.+++|+|++.++++++
T Consensus 319 ------------------------~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~ 373 (450)
T 2vdu_B 319 ------------------------LPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDN 373 (450)
T ss_dssp ------------------------SSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECC
T ss_pred ------------------------CCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEec
Confidence 56688888 8999999998 3322 334445566 7899999999654444444
Q ss_pred C------CCcEEEEeCC
Q 012799 380 F------DKSIKLWNGT 390 (456)
Q Consensus 380 ~------dg~i~iwd~~ 390 (456)
. +..|.+|.+.
T Consensus 374 ~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 374 KESSGVQKNFAKFIEYN 390 (450)
T ss_dssp TTCCSSCCCSEEEEEEE
T ss_pred ccCCCCCCcceEEEEEE
Confidence 3 4557888654
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=2.6e-29 Score=231.83 Aligned_cols=258 Identities=17% Similarity=0.225 Sum_probs=209.8
Q ss_pred cccccccCCcccEEEEEECCCCCeE-EEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEE
Q 012799 99 RCSATIAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQC 176 (456)
Q Consensus 99 ~~~~~l~~h~~~V~~~~~s~~~~~l-~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~v 176 (456)
++.+.+.+|. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+.+++|+|++++|++++ .++.|++
T Consensus 23 ~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v 100 (391)
T 1l0q_A 23 KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSV 100 (391)
T ss_dssp EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEE
Confidence 4455666665 48999999999977 566689999999999999888887555 899999999999886554 6799999
Q ss_pred EeCCCCCCccccccCcccceEEEEecccccCCCCCEE-EEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eE
Q 012799 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI 254 (456)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l 254 (456)
||+.+++... .+. +...+.+++|+| +++.+ ++++.++.|++||+.+++.+..+..+ ..+.+++|+|++ .+
T Consensus 101 ~d~~~~~~~~-~~~-~~~~~~~~~~s~-----dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l 172 (391)
T 1l0q_A 101 IDTTSNTVAG-TVK-TGKSPLGLALSP-----DGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKV 172 (391)
T ss_dssp EETTTTEEEE-EEE-CSSSEEEEEECT-----TSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEE
T ss_pred EECCCCeEEE-EEe-CCCCcceEEECC-----CCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEE
Confidence 9999887654 222 445689999999 88877 67888999999999999988888765 456999999999 55
Q ss_pred -EEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEE
Q 012799 255 -YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333 (456)
Q Consensus 255 -~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 333 (456)
++++.++.|++||+++++....+. +...+.+++++|+ +.+++
T Consensus 173 ~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~------------------------------------g~~l~ 215 (391)
T 1l0q_A 173 YVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPE------------------------------------GTKAY 215 (391)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTT------------------------------------SSEEE
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCC------------------------------------CCEEE
Confidence 567788999999999998887776 4567889999988 55577
Q ss_pred EEe---CCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEE-EEEECCCcEEEEeCCCCeEEEEEecccccE
Q 012799 334 SGS---DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405 (456)
Q Consensus 334 ~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 405 (456)
+++ .++.|++||+.... ....+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..|..+.
T Consensus 216 ~~~~~~~~~~v~~~d~~~~~-~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~ 289 (391)
T 1l0q_A 216 VTNVDKYFNTVSMIDTGTNK-ITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPY 289 (391)
T ss_dssp EEEECSSCCEEEEEETTTTE-EEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEE
T ss_pred EEecCcCCCcEEEEECCCCe-EEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCC
Confidence 776 68999999987654 334444443 47899999999987 677889999999999999999998877654
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-32 Score=243.88 Aligned_cols=224 Identities=10% Similarity=0.023 Sum_probs=180.6
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC---------
Q 012799 158 WSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS--------- 228 (456)
Q Consensus 158 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--------- 228 (456)
+.++++++++|+.||.|++||+.+++...... ...|.++.|+| + +++++.|+.|++|+..
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~-----~---~~s~s~D~~i~~w~~~~~~~~~~~~ 112 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHP-----A---IISRGPCNRLLLLYPGNQITILDSK 112 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCC-----S---EEEECSTTEEEEEETTTEEEEEETT
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCC-----c---eEEecCCCeEEEEEccCceEEeecC
Confidence 34578899999999999999999988765322 45677777777 3 9999999999999765
Q ss_pred CCeEEEEec-CcCccEEEEEeCC--CC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCcceEEEEecCcceeeeccccCC
Q 012799 229 LRKCVICLS-GHTLAVTCVKWGG--DG-VIYTGSQDCTIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHT 303 (456)
Q Consensus 229 ~~~~~~~~~-~~~~~v~~~~~~~--~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~ 303 (456)
+++.+.... +|...|.+++|+| ++ .+++++.||.|++||+++++...... .+...+.+++|+|+
T Consensus 113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pd----------- 181 (343)
T 3lrv_A 113 TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKD----------- 181 (343)
T ss_dssp TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTT-----------
T ss_pred CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCC-----------
Confidence 444444443 6778899999999 88 89999999999999999999877664 35557999999998
Q ss_pred CCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccccc-ccccEeEEEECCCCCEEEEEECCC
Q 012799 304 GKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQWVASASFDK 382 (456)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~s~~~dg 382 (456)
+.++++|+.||.|++||++........+.. |..+|++++|+|+|.+|++++ |+
T Consensus 182 -------------------------g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~ 235 (343)
T 3lrv_A 182 -------------------------SLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQ 235 (343)
T ss_dssp -------------------------SCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SS
T ss_pred -------------------------CCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CC
Confidence 566999999999999999887765355666 999999999999999999999 55
Q ss_pred cEEEEeCCCCeEEEEEec---ccccEE--EEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC-CCceEEC
Q 012799 383 SIKLWNGTTGKFVAVFRG---HVGPVY--QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DSTLKVT 456 (456)
Q Consensus 383 ~i~iwd~~~~~~~~~~~~---~~~~v~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~-Dg~v~iW 456 (456)
.|++||+++++.+..+.. |...+. ++ +|+|+|++|++++. |+.|+||
T Consensus 236 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~g~~l~~~s~~d~~i~v~ 288 (343)
T 3lrv_A 236 TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTY---------------------------DIDDSGKNMIAYSNESNSLTIY 288 (343)
T ss_dssp BEEEEETTSSTTCBSSCCCBC-----CCEEE---------------------------EECTTSSEEEEEETTTTEEEEE
T ss_pred eEEEEEcCCCCcceeecccccccccccceEE---------------------------EECCCCCEEEEecCCCCcEEEE
Confidence 999999999876554443 333333 34 89999999999998 9999998
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=2.8e-28 Score=228.07 Aligned_cols=276 Identities=11% Similarity=0.044 Sum_probs=216.8
Q ss_pred cccEEEEE---ECCCCCeEEEEE--------------CCC--cEEEEeCCCC--cceeEEecCCCCEEEEEEcCCCCEEE
Q 012799 108 TEAVLSVA---FSPDGRQLASGS--------------GDT--TVRLWDLNTQ--TPMFKCTGHKNWVLCIAWSADGKHLV 166 (456)
Q Consensus 108 ~~~V~~~~---~s~~~~~l~~~~--------------~d~--~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~ 166 (456)
...+..++ |+|+++.++..+ .++ .|..||..++ +.+..+..+ ..+.+++|+|++.+++
T Consensus 60 ~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~ 138 (433)
T 3bws_A 60 NIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLAI 138 (433)
T ss_dssp TEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEEE
T ss_pred CCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEEE
Confidence 44566777 777766555432 233 4444444334 445555544 4566999999777888
Q ss_pred EEeCCCeEEEEeCCCCCCccc----cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCcc
Q 012799 167 SGSKAGELQCWDPQTGKPSGN----PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA 242 (456)
Q Consensus 167 s~~~dg~i~vwd~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 242 (456)
+++.++.|++||+.+++.... ...+|...|.+++|++ ++..+++++.|+.|++||+++++.+..+..|...
T Consensus 139 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~ 213 (433)
T 3bws_A 139 PLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE-----HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKW 213 (433)
T ss_dssp EBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG-----GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSS
T ss_pred EeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC-----CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCC
Confidence 888899999999998876532 2347888999999988 8899999999999999999999999999889999
Q ss_pred EEEEEeCCCC-eE-EEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhh
Q 012799 243 VTCVKWGGDG-VI-YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320 (456)
Q Consensus 243 v~~~~~~~~~-~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (456)
+.+++|+|++ .+ ++++.++.|++||+++++.+..+..+ ..+.+++++|+
T Consensus 214 ~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~---------------------------- 264 (433)
T 3bws_A 214 SKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKD---------------------------- 264 (433)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTT----------------------------
T ss_pred eeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCC----------------------------
Confidence 9999999998 55 45557999999999999988888754 45899999988
Q ss_pred hhhccCCCCCEEEEEe--------CCCcEEEEecCCCCCCccccccccccEeEEEECCCCCE-EEEEECCCcEEEEeCCC
Q 012799 321 YNKIKGNAPERLVSGS--------DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW-VASASFDKSIKLWNGTT 391 (456)
Q Consensus 321 ~~~~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~s~~~dg~i~iwd~~~ 391 (456)
+.++++++ .|+.|++||+..... .. ...|...+.+++|+|+++. +++++.|+.|++||+.+
T Consensus 265 --------g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~-~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~ 334 (433)
T 3bws_A 265 --------GKELYIAQFSASNQESGGGRLGIYSMDKEKL-ID-TIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE 334 (433)
T ss_dssp --------SSEEEEEEEESCTTCSCCEEEEEEETTTTEE-EE-EEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT
T ss_pred --------CCEEEEEECCCCccccCCCeEEEEECCCCcE-Ee-eccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC
Confidence 45577776 588999999876532 22 3356668999999999975 56678999999999999
Q ss_pred CeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC---------------CCceEEC
Q 012799 392 GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK---------------DSTLKVT 456 (456)
Q Consensus 392 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~---------------Dg~v~iW 456 (456)
++.+..+. +...+.++ +|+|+|++|++++. ||.|++|
T Consensus 335 ~~~~~~~~-~~~~~~~~---------------------------~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~ 386 (433)
T 3bws_A 335 KKVQKSIP-VFDKPNTI---------------------------ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVI 386 (433)
T ss_dssp TEEEEEEE-CSSSEEEE---------------------------EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEE
T ss_pred CcEEEEec-CCCCCCeE---------------------------EEcCCCCEEEEEecCCCccccccccccccceEEEEE
Confidence 99888876 66778888 89999999888876 5799987
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=8.1e-29 Score=214.50 Aligned_cols=246 Identities=11% Similarity=0.065 Sum_probs=163.5
Q ss_pred cccccccCCcccEEEEEECCCCCeEEEEE-CC---CcEEEEeCCCC----cceeEEecCCCCEEEEEEcCCCCEEEEEe-
Q 012799 99 RCSATIAGHTEAVLSVAFSPDGRQLASGS-GD---TTVRLWDLNTQ----TPMFKCTGHKNWVLCIAWSADGKHLVSGS- 169 (456)
Q Consensus 99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~~-~d---~~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~- 169 (456)
++.+++++|..+|..+.+.||-.-|++.. .+ +.|+..-+... .......+|...|..+ ++++++.+++
T Consensus 77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~ 153 (356)
T 2w18_A 77 EKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGT 153 (356)
T ss_dssp EEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESS
T ss_pred eeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEeccc
Confidence 45677778888777777777543322221 11 11111111111 1111112344334433 4565555543
Q ss_pred -CCCeEEEEeCCC-CCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcC---ccEE
Q 012799 170 -KAGELQCWDPQT-GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT---LAVT 244 (456)
Q Consensus 170 -~dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~ 244 (456)
.|+.|++|++.. |+... .+..|...+..++|++.. .++..|++++.|++|++||+.+++++.++.+|. ..+.
T Consensus 154 g~d~~V~~~~~s~dG~~~~-s~~~~~~~v~~l~fs~~~--g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~ 230 (356)
T 2w18_A 154 LSDQQVEVMTFAEDGGGKE-NQFLMPPEETILTFAEVQ--GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVC 230 (356)
T ss_dssp STTCEEEEEEECTTSCEEE-EEEECCCSSCEEEEEEEE--TSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCE
T ss_pred CCCCcEEEEEECCCCceee-eeccCCCceeeEEeeccC--CCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeE
Confidence 588888888844 44333 466788888888888732 267899999999999999999999999997654 4677
Q ss_pred EEEeCCCC-eE------------EEEeCCCcEEEEECCCCeEEEEee-----cCCcceEEEEecCcceeeeccccCCCCc
Q 012799 245 CVKWGGDG-VI------------YTGSQDCTIKVWETTQGKLIRELK-----GHGHWVNSLALSTEYALRTGAFDHTGKQ 306 (456)
Q Consensus 245 ~~~~~~~~-~l------------~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 306 (456)
+++|+|+| .+ ++|+.|++|++||..+++.+..+. +|...+.+..++
T Consensus 231 ~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s---------------- 294 (356)
T 2w18_A 231 HKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK---------------- 294 (356)
T ss_dssp EEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE----------------
T ss_pred EEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC----------------
Confidence 88999999 44 567889999999999998876542 333322222211
Q ss_pred cCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEe-EEEECCCCCEEEEEECCCcEE
Q 012799 307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN-HVYFSPDGQWVASASFDKSIK 385 (456)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~s~~~dg~i~ 385 (456)
+..+++++.|++|++||+.+++ ....+.+|...+. +++|+|||++|++|+.|++|+
T Consensus 295 ----------------------g~~lASgS~DgTIkIWDl~tGk-~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIk 351 (356)
T 2w18_A 295 ----------------------DHCAAAILTSGTIAIWDLLLGQ-CTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIF 351 (356)
T ss_dssp ----------------------TTEEEEEETTSCEEEEETTTCS-EEEEECCC--CCCCEEEECSSSSEEEEECTTSCEE
T ss_pred ----------------------CCEEEEEcCCCcEEEEECCCCc-EEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEE
Confidence 3458999999999999987654 5566778877654 689999999999999999999
Q ss_pred EEeC
Q 012799 386 LWNG 389 (456)
Q Consensus 386 iwd~ 389 (456)
|||+
T Consensus 352 lWd~ 355 (356)
T 2w18_A 352 VYHY 355 (356)
T ss_dssp EEEE
T ss_pred EecC
Confidence 9985
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=8.4e-28 Score=222.50 Aligned_cols=268 Identities=14% Similarity=0.128 Sum_probs=212.1
Q ss_pred eEEEeec--c--ccc--ccccCCcccEEEEEECC--------------CCCeEEEEECC------CcEEEEeCCCCccee
Q 012799 91 VFRIRPV--N--RCS--ATIAGHTEAVLSVAFSP--------------DGRQLASGSGD------TTVRLWDLNTQTPMF 144 (456)
Q Consensus 91 ~~~~~~~--~--~~~--~~l~~h~~~V~~~~~s~--------------~~~~l~~~~~d------~~v~vwd~~~~~~~~ 144 (456)
.+++|.. . ++. .++.+|...+..+++++ .+..++.++.+ +.|++||++. ....
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~ 172 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQF 172 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCE
T ss_pred EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCE
Confidence 5667765 2 333 45889999888888775 15566666554 7999999974 5567
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEE-EEeCCC
Q 012799 145 KCTGHKNWVLCIAWSADGKHLVSGSKAG---ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFV-SASKDG 220 (456)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~-~~~~dg 220 (456)
.+.+|...+.+++|+|+|++|++++.++ .|++||+.+++.. .+..|...+.+++|+| +|+.|+ +++.++
T Consensus 173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~--~l~~~~~~~~~~~~sp-----dg~~la~~~~~~g 245 (415)
T 2hqs_A 173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--QVASFPRHNGAPAFSP-----DGSKLAFALSKTG 245 (415)
T ss_dssp EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--EEECCSSCEEEEEECT-----TSSEEEEEECTTS
T ss_pred EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE--EeecCCCcccCEEEcC-----CCCEEEEEEecCC
Confidence 7788999999999999999999999885 9999999988764 3566788899999999 999888 566655
Q ss_pred c--EEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeC-CC--cEEEEECCCCeEEEEeecCCcceEEEEecCcce
Q 012799 221 D--ARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ-DC--TIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294 (456)
Q Consensus 221 ~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 294 (456)
. |++||+.+++. ..+..|...+.+++|+|+| .|++++. ++ .|++||+.+++. ..+..+...+.+++|+|+
T Consensus 246 ~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spd-- 321 (415)
T 2hqs_A 246 SLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSD-- 321 (415)
T ss_dssp SCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTT--
T ss_pred CceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCC--
Confidence 4 99999988875 5677788899999999999 6777665 44 688889988764 345556678889999998
Q ss_pred eeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC---CcEEEEecCCCCCCccccccccccEeEEEECCC
Q 012799 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD---FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD 371 (456)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~ 371 (456)
+++|++++.+ ..|++||+..+.. ..+..+. .+.+++|+|+
T Consensus 322 ----------------------------------G~~l~~~~~~~g~~~i~~~d~~~~~~--~~l~~~~-~~~~~~~spd 364 (415)
T 2hqs_A 322 ----------------------------------GKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-LDETPSLAPN 364 (415)
T ss_dssp ----------------------------------SSEEEEEEECSSCEEEEEEETTTCCE--EECCCSS-SCEEEEECTT
T ss_pred ----------------------------------CCEEEEEECcCCceEEEEEECCCCCE--EEecCCC-CcCCeEEcCC
Confidence 5557777654 5899999876543 3344444 7899999999
Q ss_pred CCEEEEEECCC---cEEEEeCCCCeEEEEEecccccEEEE
Q 012799 372 GQWVASASFDK---SIKLWNGTTGKFVAVFRGHVGPVYQI 408 (456)
Q Consensus 372 ~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~i 408 (456)
|++|++++.++ .|++||+. +.....+..|.+.|.++
T Consensus 365 g~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~ 403 (415)
T 2hqs_A 365 GTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFP 403 (415)
T ss_dssp SSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEE
T ss_pred CCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCC
Confidence 99999988777 79999986 66677888999999999
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=2.8e-28 Score=225.74 Aligned_cols=274 Identities=15% Similarity=0.137 Sum_probs=214.1
Q ss_pred CcccEEEEEECCCCC-eEEEEE----CCC----cEEEEeC--CCCcce--eEEecCCCCEEEEEEcC-------------
Q 012799 107 HTEAVLSVAFSPDGR-QLASGS----GDT----TVRLWDL--NTQTPM--FKCTGHKNWVLCIAWSA------------- 160 (456)
Q Consensus 107 h~~~V~~~~~s~~~~-~l~~~~----~d~----~v~vwd~--~~~~~~--~~~~~~~~~v~~~~~~~------------- 160 (456)
+...|...+|.+.|. ++++|+ .|| .+++||+ .+++.+ ..+.+|...+..+++++
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 345677788888775 566776 467 8999999 888877 45788888888877764
Q ss_pred -CCCEEEEEeCC------CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC---cEEEEECCCC
Q 012799 161 -DGKHLVSGSKA------GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG---DARIWDVSLR 230 (456)
Q Consensus 161 -~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~ 230 (456)
.+..++.++.+ +.|++||+..+.. ..+..|...+.+++|+| +|+.+++++.++ .|++||+.++
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~--~~l~~~~~~v~~~~~Sp-----dg~~la~~s~~~~~~~i~~~d~~tg 213 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ--FVVHRSPQPLMSPAWSP-----DGSKLAYVTFESGRSALVIQTLANG 213 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCSC--EEEEEESSCEEEEEECT-----TSSEEEEEECTTSSCEEEEEETTTC
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCCC--EEEeCCCCcceeeEEcC-----CCCEEEEEEecCCCcEEEEEECCCC
Confidence 25667666654 7999999975443 25677889999999999 999999999875 9999999988
Q ss_pred eEEEEecCcCccEEEEEeCCCC-eEE-EEeCCCc--EEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCc
Q 012799 231 KCVICLSGHTLAVTCVKWGGDG-VIY-TGSQDCT--IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ 306 (456)
Q Consensus 231 ~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 306 (456)
+.. .+..+...+.+++|+|+| .|+ +++.++. |++||+.+++. ..+..+...+.+++|+|+
T Consensus 214 ~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spd-------------- 277 (415)
T 2hqs_A 214 AVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPD-------------- 277 (415)
T ss_dssp CEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTT--------------
T ss_pred cEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCC--------------
Confidence 775 466678899999999999 565 6666654 99999998876 566667888999999998
Q ss_pred cCChHHHHHHHHhhhhhccCCCCCEEEEEeC-CC--cEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECC--
Q 012799 307 YSSPEEMKKAALERYNKIKGNAPERLVSGSD-DF--TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD-- 381 (456)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d-- 381 (456)
+++|++++. ++ .|++||+..+. ...+..+...+.+++|+|+|++|++++.+
T Consensus 278 ----------------------g~~l~~~s~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g 333 (415)
T 2hqs_A 278 ----------------------SQNLAFTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGG 333 (415)
T ss_dssp ----------------------SSEEEEEECTTSSCEEEEEETTSSC--CEECCCSSSEEEEEEECTTSSEEEEEEECSS
T ss_pred ----------------------CCEEEEEECCCCCcEEEEEECCCCC--EEEEecCCCcccCeEECCCCCEEEEEECcCC
Confidence 555777765 45 67777876554 23345566789999999999999988764
Q ss_pred -CcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCC---ceEEC
Q 012799 382 -KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS---TLKVT 456 (456)
Q Consensus 382 -g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg---~v~iW 456 (456)
+.|++||+.+++.. .+..+. .+.++ +|+|||++|++++.|+ .|++|
T Consensus 334 ~~~i~~~d~~~~~~~-~l~~~~-~~~~~---------------------------~~spdg~~l~~~s~~~~~~~l~~~ 383 (415)
T 2hqs_A 334 QQHIAKQDLATGGVQ-VLSSTF-LDETP---------------------------SLAPNGTMVIYSSSQGMGSVLNLV 383 (415)
T ss_dssp CEEEEEEETTTCCEE-ECCCSS-SCEEE---------------------------EECTTSSEEEEEEEETTEEEEEEE
T ss_pred ceEEEEEECCCCCEE-EecCCC-CcCCe---------------------------EEcCCCCEEEEEEcCCCccEEEEE
Confidence 58999999988764 455554 77777 8999999999998877 67765
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=3.2e-26 Score=218.26 Aligned_cols=295 Identities=13% Similarity=0.109 Sum_probs=222.5
Q ss_pred eEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeC--CCCcceeEEecCCCCEEEEEEcC----CC
Q 012799 91 VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL--NTQTPMFKCTGHKNWVLCIAWSA----DG 162 (456)
Q Consensus 91 ~~~~~~~--~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~--~~~~~~~~~~~~~~~v~~~~~~~----~~ 162 (456)
.+.++.. +++..++..+.. +.+++|+|||++|++++.|++|++||+ .+++.+.++. +...+..++|+| +|
T Consensus 160 ~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg 237 (543)
T 1nir_A 160 QIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYED 237 (543)
T ss_dssp EEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTT
T ss_pred eEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCC
Confidence 3444433 456677773333 899999999999999999999999999 7888888887 456789999999 99
Q ss_pred CEEEEEeC-CCeEEEEeCCCCCCcccccc-C--------cc-cceEEEEecccccCCCCC-EEEEEeCCCcEEEEECCCC
Q 012799 163 KHLVSGSK-AGELQCWDPQTGKPSGNPLS-G--------HK-KWITGISWEPVHLNAPCR-RFVSASKDGDARIWDVSLR 230 (456)
Q Consensus 163 ~~l~s~~~-dg~i~vwd~~~~~~~~~~~~-~--------~~-~~v~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 230 (456)
+++++++. +++|.+||..+++.+..... + |. ..+.++.++| ++. .+++...++.|.+||..+.
T Consensus 238 ~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~-----~~~~~~vs~~~~g~i~vvd~~~~ 312 (543)
T 1nir_A 238 RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH-----EHPEFIVNVKETGKVLLVNYKDI 312 (543)
T ss_dssp TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS-----SSSEEEEEETTTTEEEEEECTTS
T ss_pred CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECC-----CCCEEEEEECCCCeEEEEEecCC
Confidence 99999885 89999999998876653221 1 22 3688899988 544 5566677899999999876
Q ss_pred eEEE--EecCcCccEEEEEeCCCC-eEEEE-eCCCcEEEEECCCCeEEEEeec----CCcceEEEEecCcceeeeccccC
Q 012799 231 KCVI--CLSGHTLAVTCVKWGGDG-VIYTG-SQDCTIKVWETTQGKLIRELKG----HGHWVNSLALSTEYALRTGAFDH 302 (456)
Q Consensus 231 ~~~~--~~~~~~~~v~~~~~~~~~-~l~~~-~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~ 302 (456)
+.+. .+ .+...+.++.|+|++ +++++ ..+++|.+||..+++++..+.. |......+ ++|++
T Consensus 313 ~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~--------- 381 (543)
T 1nir_A 313 DNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKY--------- 381 (543)
T ss_dssp SSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTT---------
T ss_pred CcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCC---------
Confidence 5433 33 245667889999999 56555 4589999999999999888764 33222222 34441
Q ss_pred CCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe-CCCcEEEEecCCC------CCCccccccccccEeEEEECCCCCEE
Q 012799 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS-DDFTMFLWEPAVS------KQPKTRMTGHQQLVNHVYFSPDGQWV 375 (456)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~------~~~~~~~~~~~~~v~~~~~sp~~~~l 375 (456)
+..++++. .|++|.+||+... .+.+..+..|...+..++++|+|++|
T Consensus 382 --------------------------g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l 435 (543)
T 1nir_A 382 --------------------------GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHL 435 (543)
T ss_dssp --------------------------EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEE
T ss_pred --------------------------ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcE
Confidence 33466665 6899999998762 34566677888888899999999999
Q ss_pred EEEE-------CCCcEEEEeCCCCeEE-EEE--------ecccccEEEEEeeeeeeecCCCCceeeecccccccceeEec
Q 012799 376 ASAS-------FDKSIKLWNGTTGKFV-AVF--------RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA 439 (456)
Q Consensus 376 ~s~~-------~dg~i~iwd~~~~~~~-~~~--------~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 439 (456)
++++ .+++|.+||+.+++.. ..+ ..+...+..+ .|+|
T Consensus 436 ~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------------------------~~~~ 488 (543)
T 1nir_A 436 YVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQP---------------------------EYNK 488 (543)
T ss_dssp EECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEE---------------------------EECS
T ss_pred EEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEec---------------------------cCCC
Confidence 9987 2779999999998876 443 3456677777 8999
Q ss_pred CCCeEEEee-----CCCceEEC
Q 012799 440 DSRLLLSGS-----KDSTLKVT 456 (456)
Q Consensus 440 dg~~l~s~s-----~Dg~v~iW 456 (456)
||+.|+.+. .|+.|.||
T Consensus 489 ~g~~~~~s~~~~~~~~~~i~v~ 510 (543)
T 1nir_A 489 RGDEVWFSVWNGKNDSSALVVV 510 (543)
T ss_dssp SSSEEEEEEECCTTSCCEEEEE
T ss_pred CCCEEEEEeecCCCCCCeEEEE
Confidence 999888662 47999987
No 130
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=1.1e-26 Score=232.30 Aligned_cols=275 Identities=15% Similarity=0.160 Sum_probs=211.9
Q ss_pred cccEEEEEECCCCCeEEEEEC-CC-----cEEEEeCCCCcceeEEecCCC------------------------CEEEEE
Q 012799 108 TEAVLSVAFSPDGRQLASGSG-DT-----TVRLWDLNTQTPMFKCTGHKN------------------------WVLCIA 157 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~-d~-----~v~vwd~~~~~~~~~~~~~~~------------------------~v~~~~ 157 (456)
...|.+++|+|||++|++++. |+ .|++||+.+++....+..+.. .+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 557999999999999999998 88 899999999887766655433 378999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCC---CCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 012799 158 WSADGKHLVSGSKAGELQCWDPQTG---KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI 234 (456)
Q Consensus 158 ~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 234 (456)
|+|||++|++++. +.|.+||+.++ ... .+..+...+..++|+| +|+++++++. +.|++||+.+++...
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~--~l~~~~~~~~~~~~SP-----DG~~la~~~~-~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVR--QLTHGEGFATDAKLSP-----KGGFVSFIRG-RNLWVIDLASGRQMQ 186 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCC--BCCCSSSCEEEEEECT-----TSSEEEEEET-TEEEEEETTTTEEEE
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEE--EcccCCcccccccCCC-----CCCEEEEEeC-CcEEEEecCCCCEEE
Confidence 9999999999887 89999999988 433 4666778899999999 9999998875 689999999988766
Q ss_pred EecCcCcc----------------EEEEEeCCCC-eEEEEeCCC---------------------------------cEE
Q 012799 235 CLSGHTLA----------------VTCVKWGGDG-VIYTGSQDC---------------------------------TIK 264 (456)
Q Consensus 235 ~~~~~~~~----------------v~~~~~~~~~-~l~~~~~dg---------------------------------~i~ 264 (456)
....+... +..++|+|+| .|++++.|+ .|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 55444332 4779999999 788777665 789
Q ss_pred EEECCC-CeEEEEee--cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC----
Q 012799 265 VWETTQ-GKLIRELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD---- 337 (456)
Q Consensus 265 iwd~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 337 (456)
+||+.+ ++...... .+...+..++| |+ +++|++++.
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pD------------------------------------g~~l~~~~~~~~~ 309 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RD------------------------------------PQHLSFQRQSRDQ 309 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EE------------------------------------TTEEEEEEEETTS
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CC------------------------------------CCEEEEEEecccC
Confidence 999988 77655443 36778899999 98 455665543
Q ss_pred -CCcEEEEecCCCCCCccccccccc----cEeEEEECCCCCEEEEEECCCcEEEEeCC-CCeEEEEEecccccEEEEEee
Q 012799 338 -DFTMFLWEPAVSKQPKTRMTGHQQ----LVNHVYFSPDGQWVASASFDKSIKLWNGT-TGKFVAVFRGHVGPVYQIRFE 411 (456)
Q Consensus 338 -dg~i~iwd~~~~~~~~~~~~~~~~----~v~~~~~sp~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~ 411 (456)
+..|++||+.++.. ...+..+.. .+..++|+|||+++++++.||.++||.+. +++ ...+..|...+..+.
T Consensus 310 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~-- 385 (741)
T 2ecf_A 310 KKLDLVEVTLASNQQ-RVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELL-- 385 (741)
T ss_dssp SEEEEEEEETTTCCE-EEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEE--
T ss_pred CeEEEEEEECCCCce-EEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEe--
Confidence 56899999776543 333333332 45688999999999999999988888765 355 677777777777651
Q ss_pred eeeeecCCCCceeeecccccccceeEecCCCeEEE-eeCCC--ceEEC
Q 012799 412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS-GSKDS--TLKVT 456 (456)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s-~s~Dg--~v~iW 456 (456)
.|+|||+.|+. ++.|+ .++||
T Consensus 386 ------------------------~~s~dg~~l~~~~~~~~~~~~~l~ 409 (741)
T 2ecf_A 386 ------------------------AVDEKAGLAYFRAGIESARESQIY 409 (741)
T ss_dssp ------------------------EEETTTTEEEEEECSSCTTCBEEE
T ss_pred ------------------------EEeCCCCEEEEEEeCCCCceEEEE
Confidence 48999987754 45555 78887
No 131
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.95 E-value=2.7e-26 Score=202.93 Aligned_cols=253 Identities=17% Similarity=0.189 Sum_probs=192.8
Q ss_pred EECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CCCccccccCc-ccceEEEEecc
Q 012799 126 GSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT-GKPSGNPLSGH-KKWITGISWEP 203 (456)
Q Consensus 126 ~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~-~~~v~~~~~~~ 203 (456)
++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++.|.+||+.+ ++... ....+ ...+.+++|+|
T Consensus 18 ~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEK-VDTGFATICNNDHGISP 94 (297)
T ss_dssp CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEE-CCCTTCCCBCSCCEECT
T ss_pred CCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceE-eccccccccccceEECC
Confidence 457889999999987765 4556899999999999999999987 78999999998 76654 33334 46788999999
Q ss_pred cccCCCCCEEEEEe--CCCcEEEE--ECCCCeEEEEecCcCccEEEEEeCCCC-eEE-EEeCCCcEEEEECCC-CeEEEE
Q 012799 204 VHLNAPCRRFVSAS--KDGDARIW--DVSLRKCVICLSGHTLAVTCVKWGGDG-VIY-TGSQDCTIKVWETTQ-GKLIRE 276 (456)
Q Consensus 204 ~~~~~~~~~l~~~~--~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~dg~i~iwd~~~-~~~~~~ 276 (456)
+++.+++++ .++...+| +..+++ ...+..+ ..+..++|+|++ .++ ++..++.+++|++.. +.....
T Consensus 95 -----dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~ 167 (297)
T 2ojh_A 95 -----DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR 167 (297)
T ss_dssp -----TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred -----CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE
Confidence 999999998 33445554 555544 3344433 348899999999 555 788899999998532 233455
Q ss_pred eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe-CCCcEEEEecCCCCCCccc
Q 012799 277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQPKTR 355 (456)
Q Consensus 277 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 355 (456)
+..+...+.++.|+|+ ++.++.++ .++.+.+|++.........
T Consensus 168 ~~~~~~~~~~~~~s~d------------------------------------g~~l~~~~~~~~~~~i~~~~~~~~~~~~ 211 (297)
T 2ojh_A 168 LTHGEGRNDGPDYSPD------------------------------------GRWIYFNSSRTGQMQIWRVRVDGSSVER 211 (297)
T ss_dssp CCCSSSCEEEEEECTT------------------------------------SSEEEEEECTTSSCEEEEEETTSSCEEE
T ss_pred cccCCCccccceECCC------------------------------------CCEEEEEecCCCCccEEEECCCCCCcEE
Confidence 6667788999999998 44466555 5899999997654555566
Q ss_pred cccccccEeEEEECCCCCEEEEEECC-----------CcEEEEeCCCCeE--EEEEecccccEEEEEeeeeeeecCCCCc
Q 012799 356 MTGHQQLVNHVYFSPDGQWVASASFD-----------KSIKLWNGTTGKF--VAVFRGHVGPVYQIRFELIYCFRYPSNF 422 (456)
Q Consensus 356 ~~~~~~~v~~~~~sp~~~~l~s~~~d-----------g~i~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~~~~~ 422 (456)
+..|...+..++|+|+|++|++++.+ +.|++||+.+++. +..+.+|...+..+
T Consensus 212 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-------------- 277 (297)
T 2ojh_A 212 ITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSP-------------- 277 (297)
T ss_dssp CCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSC--------------
T ss_pred EecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccc--------------
Confidence 77788889999999999999888766 5699999988765 44444677777777
Q ss_pred eeeecccccccceeEecCCCeEEEeeCCC
Q 012799 423 YCVVDMSCCMSLYSWSADSRLLLSGSKDS 451 (456)
Q Consensus 423 ~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg 451 (456)
+|+|||++|++++.|.
T Consensus 278 -------------~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 278 -------------NWSPDGDEFAYVRYFP 293 (297)
T ss_dssp -------------CBCTTSSEEEEEEECC
T ss_pred -------------eECCCCCEEEEEEecc
Confidence 8999999999888764
No 132
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.95 E-value=8.2e-25 Score=198.68 Aligned_cols=271 Identities=14% Similarity=0.136 Sum_probs=209.3
Q ss_pred CcccEEEEEECCCCCeEEEEEC-------CCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEe
Q 012799 107 HTEAVLSVAFSPDGRQLASGSG-------DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-SKAGELQCWD 178 (456)
Q Consensus 107 h~~~V~~~~~s~~~~~l~~~~~-------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd 178 (456)
....+..++|+|+++++++++. ++.|.+||..+++.+..+.. ...+..++|+|++++++++ ..++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 3456789999999998888874 56899999999988887764 3457889999999966554 5579999999
Q ss_pred CCCCCCccccccCccc--------ceEEEEecccccCCCCCEEEEEe--CCCcEEEEECCCCeEEEEecCcCccEEEEEe
Q 012799 179 PQTGKPSGNPLSGHKK--------WITGISWEPVHLNAPCRRFVSAS--KDGDARIWDVSLRKCVICLSGHTLAVTCVKW 248 (456)
Q Consensus 179 ~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 248 (456)
..+++........... .+.++.|+| +++.+++++ .++.|.+||..+++.+..+..+...+.+++|
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-----dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 192 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-----ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLAL 192 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-----TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEE
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECC-----CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEE
Confidence 9998865432222111 268899998 888777776 4789999999999998888756666889999
Q ss_pred CCCC-eEEEEeCCCcEEEEECCCCeEEEEeec----CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhh
Q 012799 249 GGDG-VIYTGSQDCTIKVWETTQGKLIRELKG----HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK 323 (456)
Q Consensus 249 ~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (456)
+|++ .+++++.++.|.+||+.+++....+.. +...+..++++|+
T Consensus 193 s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~d------------------------------- 241 (353)
T 3vgz_A 193 DSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTA------------------------------- 241 (353)
T ss_dssp ETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETT-------------------------------
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCC-------------------------------
Confidence 9998 888889999999999999998887764 4456778999988
Q ss_pred ccCCCCCEEEEEe-CCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEE-CCCcEEEEeCCCCeEEEEEecc
Q 012799 324 IKGNAPERLVSGS-DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVFRGH 401 (456)
Q Consensus 324 ~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~ 401 (456)
++++++++ .++.|.+||+.+... ...+.... ...++|+|+|+++++++ .++.|.+||..+++.+..+..+
T Consensus 242 -----g~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~ 313 (353)
T 3vgz_A 242 -----RQRAFITDSKAAEVLVVDTRNGNI-LAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP 313 (353)
T ss_dssp -----TTEEEEEESSSSEEEEEETTTCCE-EEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred -----CCEEEEEeCCCCEEEEEECCCCcE-EEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC
Confidence 44455544 559999999866543 22232222 25699999999766555 6899999999999998888754
Q ss_pred cccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCC
Q 012799 402 VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD 450 (456)
Q Consensus 402 ~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~D 450 (456)
. .+.++ +|+|||++|+.+..+
T Consensus 314 ~-~~~~~---------------------------~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 314 T-HPNSL---------------------------ALSADGKTLYVSVKQ 334 (353)
T ss_dssp S-EEEEE---------------------------EECTTSCEEEEEEEC
T ss_pred C-CCCeE---------------------------EEcCCCCEEEEEEcc
Confidence 3 56777 899999977776655
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=1.1e-25 Score=214.50 Aligned_cols=272 Identities=11% Similarity=0.033 Sum_probs=210.6
Q ss_pred EECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC--CCCCCccccccCc
Q 012799 115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP--QTGKPSGNPLSGH 192 (456)
Q Consensus 115 ~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~--~~~~~~~~~~~~~ 192 (456)
+|+|++.++++++.|++|.+||..+++.+.++..+.. +..++|+|+|++|++++.|+.|.+||+ .+++.+.. +. +
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~-i~-~ 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE-IK-I 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE-EE-C
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEE-Ee-c
Confidence 3889999999999999999999999999988884433 899999999999999999999999999 77765542 22 3
Q ss_pred ccceEEEEecccccCCCCCEEEEEe-CCCcEEEEECCCCeEEEEecCc-----------CccEEEEEeCCCC--eEEEEe
Q 012799 193 KKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVICLSGH-----------TLAVTCVKWGGDG--VIYTGS 258 (456)
Q Consensus 193 ~~~v~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~~~~~~~~--~l~~~~ 258 (456)
...+..++|+|.. ..+|+++++++ .+++|.+||..+++++..+..+ ...+..+.+++++ .+++..
T Consensus 221 g~~p~~va~sp~~-~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 221 GIEARSVESSKFK-GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp CSEEEEEEECCST-TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred CCCcceEEeCCCc-CCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 4557888887611 01567888887 4899999999999988887542 2368899999977 667777
Q ss_pred CCCcEEEEECCCCeEEE--EeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEE-EE
Q 012799 259 QDCTIKVWETTQGKLIR--ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV-SG 335 (456)
Q Consensus 259 ~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~ 335 (456)
.++.|.+||..+.+.+. .+. +...+..+.|+|+ +++++ ++
T Consensus 300 ~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spd------------------------------------g~~l~va~ 342 (543)
T 1nir_A 300 ETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSS------------------------------------HRYFMTAA 342 (543)
T ss_dssp TTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTT------------------------------------SCEEEEEE
T ss_pred CCCeEEEEEecCCCcceeEEec-cCcCccCceECCC------------------------------------CCEEEEEe
Confidence 89999999998865433 343 4556778888887 45455 45
Q ss_pred eCCCcEEEEecCCCCCCccccc----cccccEeEEEECCC-CCEEEEEE-CCCcEEEEeCCC-------CeEEEEEeccc
Q 012799 336 SDDFTMFLWEPAVSKQPKTRMT----GHQQLVNHVYFSPD-GQWVASAS-FDKSIKLWNGTT-------GKFVAVFRGHV 402 (456)
Q Consensus 336 ~~dg~i~iwd~~~~~~~~~~~~----~~~~~v~~~~~sp~-~~~l~s~~-~dg~i~iwd~~~-------~~~~~~~~~~~ 402 (456)
..+++|.+||..+++ ....+. .|......+ ++|+ +.+++++. .|++|.+||+.+ ++.++++.+|.
T Consensus 343 ~~~~~v~v~D~~tg~-l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g 420 (543)
T 1nir_A 343 NNSNKVAVIDSKDRR-LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG 420 (543)
T ss_dssp GGGTEEEEEETTTTE-EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC
T ss_pred cCCCeEEEEECCCCe-EEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC
Confidence 568999999987654 333332 254433333 4676 66677765 689999999998 89999999998
Q ss_pred ccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEee-------CCCceEEC
Q 012799 403 GPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-------KDSTLKVT 456 (456)
Q Consensus 403 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s-------~Dg~v~iW 456 (456)
+.+..+ +++|||++|++++ .+++|.||
T Consensus 421 ~~~~~v---------------------------~~~pdg~~l~v~~~~~~~~~~~~~v~v~ 454 (543)
T 1nir_A 421 GGSLFI---------------------------KTHPKSSHLYVDTTFNPDARISQSVAVF 454 (543)
T ss_dssp SCCCCE---------------------------ECCTTCCEEEECCTTCSSHHHHTCEEEE
T ss_pred CCceEE---------------------------EcCCCCCcEEEecCCCCCcccCceEEEE
Confidence 887777 8899999999987 37789887
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.95 E-value=1.1e-24 Score=195.98 Aligned_cols=275 Identities=12% Similarity=0.119 Sum_probs=193.9
Q ss_pred EEECCCCCe-EEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCCCccccccC
Q 012799 114 VAFSPDGRQ-LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-AGELQCWDPQTGKPSGNPLSG 191 (456)
Q Consensus 114 ~~~s~~~~~-l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~ 191 (456)
..|.+++++ +++++.++.|.+||..+++....+..+...+ .++|+|+++++++++. ++.|.+||+.+++........
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 345665554 6677789999999999999888887777777 9999999997776665 889999999988762223444
Q ss_pred cccceEEEEecccccCCCCCEEEEEeCCC---cEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE-eCCCc-EEE
Q 012799 192 HKKWITGISWEPVHLNAPCRRFVSASKDG---DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG-SQDCT-IKV 265 (456)
Q Consensus 192 ~~~~v~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~-~~dg~-i~i 265 (456)
+.....+++|+| ++++++++..++ .|.+||+.+++.+..+.. .....+++|+|+| .++++ ..++. |.+
T Consensus 82 ~~~~~~~~~~s~-----dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~ 155 (331)
T 3u4y_A 82 GQSSMADVDITP-----DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRR 155 (331)
T ss_dssp CSSCCCCEEECT-----TSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEE
T ss_pred CCCCccceEECC-----CCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEE
Confidence 455554589998 899998665553 899999999998887764 3456899999999 45544 55688 999
Q ss_pred EECCCCeEE----EEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCE-EEEEeCCCc
Q 012799 266 WETTQGKLI----RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER-LVSGSDDFT 340 (456)
Q Consensus 266 wd~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~ 340 (456)
|++.....+ ............++++|+ +++ ++++..++.
T Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~spd------------------------------------g~~l~v~~~~~~~ 199 (331)
T 3u4y_A 156 FKIDADGVLFDTGQEFISGGTRPFNITFTPD------------------------------------GNFAFVANLIGNS 199 (331)
T ss_dssp EEECTTCCEEEEEEEEECSSSSEEEEEECTT------------------------------------SSEEEEEETTTTE
T ss_pred EEECCCCcEeecCCccccCCCCccceEECCC------------------------------------CCEEEEEeCCCCe
Confidence 998764332 112233455788889887 443 455557899
Q ss_pred EEEEecCCCCCC--ccccccccccEeEEEECCCCCEEEEEE-CCCcEEEEeCCCCeE--EEEEecc----cccEEEEEee
Q 012799 341 MFLWEPAVSKQP--KTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKF--VAVFRGH----VGPVYQIRFE 411 (456)
Q Consensus 341 i~iwd~~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~~~--~~~~~~~----~~~v~~i~~~ 411 (456)
|.+||+...... ...+. ....+..++|+|+|++|++++ .++.|.+||..+++. +..+..+ ..+.
T Consensus 200 v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~------ 272 (331)
T 3u4y_A 200 IGILETQNPENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPL------ 272 (331)
T ss_dssp EEEEECSSTTSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGG------
T ss_pred EEEEECCCCcccceeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCc------
Confidence 999998765431 33333 335678899999999766554 578899999999877 3333321 1110
Q ss_pred eeeeecCCCCceeeecccccccceeEecCCCeEEEee-CCCceEEC
Q 012799 412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-KDSTLKVT 456 (456)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s-~Dg~v~iW 456 (456)
.....++|+|||++|+.++ .++.|+||
T Consensus 273 ------------------~~~~~~~~spdg~~l~v~~~~~~~v~v~ 300 (331)
T 3u4y_A 273 ------------------FGANQMALNKTETKLFISANISRELKVF 300 (331)
T ss_dssp ------------------TTCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred ------------------ccccceEECCCCCEEEEecCCCCcEEEE
Confidence 0112348999999886655 46689987
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=3e-26 Score=228.47 Aligned_cols=277 Identities=13% Similarity=0.120 Sum_probs=200.5
Q ss_pred cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCC---CEEEEEEcCCCCEEEEEeCC---------CeEEEE
Q 012799 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN---WVLCIAWSADGKHLVSGSKA---------GELQCW 177 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~s~~~d---------g~i~vw 177 (456)
.+.+++|+|||+++++ +.||+|++||+.+++....+..|.. .|.+++|+|||++|++++.+ +.+.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678999999998776 6899999999999988877777665 49999999999999999874 788899
Q ss_pred eCCCCCCcc-ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccE-------------
Q 012799 178 DPQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV------------- 243 (456)
Q Consensus 178 d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v------------- 243 (456)
|+.+++... .....|...+..++|+| +|+.+++++. +.|++||+.+++.......+...+
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SP-----dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee 170 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGP-----KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE 170 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCS-----STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHT
T ss_pred ECCCCceEeccCCccccccccccEECC-----CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEE
Confidence 999887521 12234445588899999 9999999887 799999999888776655444333
Q ss_pred -----EEEEeCCCC-eEEEEeCCC----------------------------------cEEEEECCCCeEEEEeecC---
Q 012799 244 -----TCVKWGGDG-VIYTGSQDC----------------------------------TIKVWETTQGKLIRELKGH--- 280 (456)
Q Consensus 244 -----~~~~~~~~~-~l~~~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~--- 280 (456)
.+++|+|+| .|++++.++ .|++||+.+++....+..+
T Consensus 171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~ 250 (723)
T 1xfd_A 171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP 250 (723)
T ss_dssp TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG
T ss_pred eccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccC
Confidence 789999999 777776543 7999999888765555543
Q ss_pred ---CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC----CCcEEEEecCCCCCCc
Q 012799 281 ---GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD----DFTMFLWEPAVSKQPK 353 (456)
Q Consensus 281 ---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~ 353 (456)
...+..++|+|++ +++++... +..|++||+.++....
T Consensus 251 ~~~~~~~~~~~~SpDg------------------------------------~~l~~~~~~~~~~~~i~~~d~~~g~~~~ 294 (723)
T 1xfd_A 251 RMREYYITMVKWATST------------------------------------KVAVTWLNRAQNVSILTLCDATTGVCTK 294 (723)
T ss_dssp GGSSEEEEEEEESSSS------------------------------------EEEEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred CCccceeEEEEEeCCC------------------------------------eEEEEEEcCCCCeEEEEEEeCCCCcceE
Confidence 5678899999984 34655433 3579999977654322
Q ss_pred cccccccccE----eEEEECCCCCEEEE--EECCC------cEEEEe-CCCCe--EEEEEecccccEEE-EEeeeeeeec
Q 012799 354 TRMTGHQQLV----NHVYFSPDGQWVAS--ASFDK------SIKLWN-GTTGK--FVAVFRGHVGPVYQ-IRFELIYCFR 417 (456)
Q Consensus 354 ~~~~~~~~~v----~~~~~sp~~~~l~s--~~~dg------~i~iwd-~~~~~--~~~~~~~~~~~v~~-i~~~~~~~~~ 417 (456)
.....+...+ ..++|+|||+.|+. +..+| .|.+|| ...++ ....+..+...+.. +
T Consensus 295 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~--------- 365 (723)
T 1xfd_A 295 KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKIL--------- 365 (723)
T ss_dssp EEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEE---------
T ss_pred EEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeee---------
Confidence 2112233433 37899999997765 45677 577777 34444 13344433333333 4
Q ss_pred CCCCceeeecccccccceeEecCCCeEEEeeCC---CceEEC
Q 012799 418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD---STLKVT 456 (456)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~D---g~v~iW 456 (456)
+|+|||+.|+..+.+ +.++||
T Consensus 366 ------------------~~spdg~~l~~~~~~~~~~~~~l~ 389 (723)
T 1xfd_A 366 ------------------AYDEKGNKIYFLSTEDLPRRRQLY 389 (723)
T ss_dssp ------------------EEETTTTEEEEEESSSCTTCCEEE
T ss_pred ------------------EEcCCCCEEEEEEcCCCCcceEEE
Confidence 899999999876655 778876
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=6.7e-25 Score=198.35 Aligned_cols=264 Identities=12% Similarity=0.143 Sum_probs=184.7
Q ss_pred eEEEEECCCcEEEEeCCC-Cc-ceeEEecCCCCEEEEEEcCCCCEEEEEeCC-CeEEEEeCC--CCCCccc-cccCcccc
Q 012799 122 QLASGSGDTTVRLWDLNT-QT-PMFKCTGHKNWVLCIAWSADGKHLVSGSKA-GELQCWDPQ--TGKPSGN-PLSGHKKW 195 (456)
Q Consensus 122 ~l~~~~~d~~v~vwd~~~-~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~i~vwd~~--~~~~~~~-~~~~~~~~ 195 (456)
++++++.|+.|++|++.. ++ .......+...+.+++|+|++++|++++.+ +.|.+|++. +++.... .... ...
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~ 85 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-PGS 85 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-SSC
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc-CCC
Confidence 344447799999999963 32 122223577889999999999999988886 999999997 5543211 1222 237
Q ss_pred eEEEEecccccCCCCCEEEEEeC-CCcEEEEEC---CCCeEEEEecCcCccEEEEEeCCCC-eEEEEe-CCCcEEEEECC
Q 012799 196 ITGISWEPVHLNAPCRRFVSASK-DGDARIWDV---SLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS-QDCTIKVWETT 269 (456)
Q Consensus 196 v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~---~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~dg~i~iwd~~ 269 (456)
+..++|+| +++++++++. ++.|.+||+ ...+....+.. ...+.+++|+|++ .+++++ .++.|.+||+.
T Consensus 86 ~~~~~~s~-----dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~ 159 (343)
T 1ri6_A 86 LTHISTDH-----QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVS 159 (343)
T ss_dssp CSEEEECT-----TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred CcEEEEcC-----CCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEec
Confidence 78999999 8888877665 888999999 44445555543 3458899999999 677776 89999999998
Q ss_pred C-CeEEE----Eeec-CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEE-EEeCCCcEE
Q 012799 270 Q-GKLIR----ELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV-SGSDDFTMF 342 (456)
Q Consensus 270 ~-~~~~~----~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~ 342 (456)
+ ++... .+.. ....+..++|+|+ +++++ ++..++.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pd------------------------------------g~~l~~~~~~~~~i~ 203 (343)
T 1ri6_A 160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPN------------------------------------EQYAYCVNELNSSVD 203 (343)
T ss_dssp TTSCEEEEEEEEEECSTTCCEEEEEECTT------------------------------------SSEEEEEETTTTEEE
T ss_pred CCCceeeecccccccCCCCCcceEEECCC------------------------------------CCEEEEEeCCCCEEE
Confidence 7 65432 2222 3446778999987 44454 455889999
Q ss_pred EEecCCCC-CC--cccc---c-c--ccccEeEEEECCCCCEEEE-EECCCcEEEEeCC--C--CeEEEEEecccccEEEE
Q 012799 343 LWEPAVSK-QP--KTRM---T-G--HQQLVNHVYFSPDGQWVAS-ASFDKSIKLWNGT--T--GKFVAVFRGHVGPVYQI 408 (456)
Q Consensus 343 iwd~~~~~-~~--~~~~---~-~--~~~~v~~~~~sp~~~~l~s-~~~dg~i~iwd~~--~--~~~~~~~~~~~~~v~~i 408 (456)
+||+.... .. .... . + ....+..++|+|+|++|++ +..++.|.+||+. + .+.+..+..+.. +.++
T Consensus 204 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~ 282 (343)
T 1ri6_A 204 VWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGF 282 (343)
T ss_dssp EEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCE
T ss_pred EEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceE
Confidence 99985422 11 1111 1 1 1235678999999998775 4478999999998 2 344444544433 5555
Q ss_pred EeeeeeeecCCCCceeeecccccccceeEecCCCeEEEee-CCCceEEC
Q 012799 409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-KDSTLKVT 456 (456)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s-~Dg~v~iW 456 (456)
+|+|+|++|++++ .|+.|++|
T Consensus 283 ---------------------------~~s~dg~~l~~~~~~~~~v~v~ 304 (343)
T 1ri6_A 283 ---------------------------NVDHSGKYLIAAGQKSHHISVY 304 (343)
T ss_dssp ---------------------------EECTTSSEEEEECTTTCEEEEE
T ss_pred ---------------------------EECCCCCEEEEecCCCCeEEEE
Confidence 8999999888887 68999987
No 137
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=5.8e-26 Score=234.51 Aligned_cols=319 Identities=13% Similarity=0.088 Sum_probs=226.1
Q ss_pred ccccccccCCcccEEEEEECCCCCeEEEEECC------CcEEEEeCCCCcceeEEecCCCCE-------EEEEEcCCCCE
Q 012799 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGD------TTVRLWDLNTQTPMFKCTGHKNWV-------LCIAWSADGKH 164 (456)
Q Consensus 98 ~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d------~~v~vwd~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~ 164 (456)
+...+.|.+|...|.+++|||||++||+++.+ ..|++|++.+++ ...+..|...+ ..++|+|||++
T Consensus 42 gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~l 120 (1045)
T 1k32_A 42 SGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNL 120 (1045)
T ss_dssp TCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCE
T ss_pred CCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEE
Confidence 44567788999999999999999999988643 379999998766 56778888888 99999999997
Q ss_pred EEEEeCC------CeEEEEeCCCCCCccc------------------------------------------------ccc
Q 012799 165 LVSGSKA------GELQCWDPQTGKPSGN------------------------------------------------PLS 190 (456)
Q Consensus 165 l~s~~~d------g~i~vwd~~~~~~~~~------------------------------------------------~~~ 190 (456)
+++++.+ ..|.+|++.+++.... .+.
T Consensus 121 l~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~ 200 (1045)
T 1k32_A 121 IISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV 200 (1045)
T ss_dssp EEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE
T ss_pred EEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECc
Confidence 7777754 3588888766542210 012
Q ss_pred CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC-CeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEEC
Q 012799 191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWET 268 (456)
Q Consensus 191 ~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~ 268 (456)
+|...+.++.|++ + ..+++++.++.+.+|.+.. +.....+..|. .+...+|+|+| .++.+ .++.|++||+
T Consensus 201 ~~~~~v~~~~~s~-----d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~ 272 (1045)
T 1k32_A 201 DMSTHVSSPVIVG-----H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNP 272 (1045)
T ss_dssp CCSSCCEEEEEET-----T-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECT
T ss_pred CCCCcccceEEeC-----C-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecC
Confidence 3445566667765 4 5666777889999998653 33444555554 35667999999 56655 5899999999
Q ss_pred CCCeEEEEeec-----------CCcceEEEEec-CcceeeeccccCCCCccCChHHHHH----HHH-hhhhhccCCCCCE
Q 012799 269 TQGKLIRELKG-----------HGHWVNSLALS-TEYALRTGAFDHTGKQYSSPEEMKK----AAL-ERYNKIKGNAPER 331 (456)
Q Consensus 269 ~~~~~~~~~~~-----------~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~ 331 (456)
...+ +..+.. +...+.+++|+ |++.......+.....+........ ... ......+. +++.
T Consensus 273 ~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~ 350 (1045)
T 1k32_A 273 DTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVA 350 (1045)
T ss_dssp TTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEE
T ss_pred CceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCe
Confidence 5443 335544 23468999999 9986443332221111111000000 000 01112244 6778
Q ss_pred EEEEeCCCcEE-EEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799 332 LVSGSDDFTMF-LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410 (456)
Q Consensus 332 l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 410 (456)
+++++.++.+. +||+.... .. .+.+|...+..++|+|||++|++++.++.|++||+.+++....+.+|.+.+.++
T Consensus 351 l~~~s~~~~l~~~~d~~~~~-~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~-- 426 (1045)
T 1k32_A 351 FIHGTREGDFLGIYDYRTGK-AE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF-- 426 (1045)
T ss_dssp EEEEETTEEEEEEEETTTCC-EE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCE--
T ss_pred EEEEECCCceEEEEECCCCC-ce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccce--
Confidence 88888888888 89976543 22 333777889999999999999999999999999999999888887898888888
Q ss_pred eeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCC----------ceEEC
Q 012799 411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS----------TLKVT 456 (456)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg----------~v~iW 456 (456)
+|||||++|++++.++ .|++|
T Consensus 427 -------------------------~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~ 457 (1045)
T 1k32_A 427 -------------------------TISDNSRFIAYGFPLKHGETDGYVMQAIHVY 457 (1045)
T ss_dssp -------------------------EECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred -------------------------EECCCCCeEEEEecCccccccCCCCCeEEEE
Confidence 9999999999988754 88887
No 138
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.94 E-value=8.9e-25 Score=197.04 Aligned_cols=271 Identities=11% Similarity=0.080 Sum_probs=197.7
Q ss_pred CeEEEEECCCcEEEEeCCCCcceeEEecCCC--CEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCCccccccCc----c
Q 012799 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKN--WVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPLSGH----K 193 (456)
Q Consensus 121 ~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~----~ 193 (456)
++|++++.++.|++||..+++.+..+..... .+..++|+|++++++ ++..++.|.+||+.+++........+ .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4789999999999999999988877763322 588999999998765 55567899999999887654322222 2
Q ss_pred cceEEEEecccccCCCCCEEEEEe------------CCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCC
Q 012799 194 KWITGISWEPVHLNAPCRRFVSAS------------KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD 260 (456)
Q Consensus 194 ~~v~~~~~~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d 260 (456)
..+..++|+| +++++++++ .++.|.+||+.+++.+..+.. ...+.+++|+|++ .++++ +
T Consensus 82 ~~~~~~~~s~-----dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~ 153 (337)
T 1pby_B 82 KSLFGAALSP-----DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--G 153 (337)
T ss_dssp ECTTCEEECT-----TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--S
T ss_pred ccccceEECC-----CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--C
Confidence 3567888988 888888886 579999999999988877754 4557889999999 56666 6
Q ss_pred CcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCE----EEEEe
Q 012799 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER----LVSGS 336 (456)
Q Consensus 261 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~ 336 (456)
+.|.+||+.+++....+..+.. ...+.++|++......... +.. ...+.
T Consensus 154 ~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~--------------------------~~~~~~~~~~~~ 206 (337)
T 1pby_B 154 RDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHES--------------------------SGVMATPFYTAR 206 (337)
T ss_dssp SSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTT--------------------------TTEEEEEEEEEB
T ss_pred CeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccC--------------------------CCceeeeeeccc
Confidence 8999999999988877764331 1122556664321111000 000 11111
Q ss_pred CCC----------cEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEE
Q 012799 337 DDF----------TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY 406 (456)
Q Consensus 337 ~dg----------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 406 (456)
.++ .|.+||+............+...+.+++|+|+|++|+++ ++.|.+||+.+++.+..+..+ ..+.
T Consensus 207 ~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~ 283 (337)
T 1pby_B 207 KDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYY 283 (337)
T ss_dssp TTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCC
T ss_pred cccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-Ccee
Confidence 122 589999876654333344556678899999999999888 799999999999988877643 3456
Q ss_pred EEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 407 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
++ +|+|||++|++++.|+.|++|
T Consensus 284 ~~---------------------------~~s~dg~~l~~~~~~~~i~v~ 306 (337)
T 1pby_B 284 SV---------------------------NVSTDGSTVWLGGALGDLAAY 306 (337)
T ss_dssp EE---------------------------EECTTSCEEEEESBSSEEEEE
T ss_pred eE---------------------------EECCCCCEEEEEcCCCcEEEE
Confidence 66 899999999999999999987
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=3.2e-25 Score=221.63 Aligned_cols=266 Identities=13% Similarity=0.105 Sum_probs=203.4
Q ss_pred cEEEEEECCCCCeEEEEECCCcEEEEeCCCCc--ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc
Q 012799 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 187 (456)
.|.+++|||||++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|++++ ++.|.+||+.+++...
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~- 186 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQ- 186 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE-
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEE-
Confidence 4889999999999999986 899999998873 4556677888999999999999999987 4699999999876543
Q ss_pred cccCcccc----------------eEEEEecccccCCCCCEEEEEeCCC-------------------------------
Q 012799 188 PLSGHKKW----------------ITGISWEPVHLNAPCRRFVSASKDG------------------------------- 220 (456)
Q Consensus 188 ~~~~~~~~----------------v~~~~~~~~~~~~~~~~l~~~~~dg------------------------------- 220 (456)
....+... +..+.|+| +|+.|++++.|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-----Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-----DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-----TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred eccCCccceeccccceeeeeccccccceEECC-----CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 22222221 46789999 999999988765
Q ss_pred --cEEEEECCC-CeEEEEec--CcCccEEEEEeCCCC-eEEEEeC-----CCcEEEEECCCCeEEEEeecCCc----ceE
Q 012799 221 --DARIWDVSL-RKCVICLS--GHTLAVTCVKWGGDG-VIYTGSQ-----DCTIKVWETTQGKLIRELKGHGH----WVN 285 (456)
Q Consensus 221 --~i~iwd~~~-~~~~~~~~--~~~~~v~~~~~~~~~-~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~----~i~ 285 (456)
.|++||+.+ ++...... .|...+..++| |+| .|++++. +..|++||+.+++....+..+.. .+.
T Consensus 262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 340 (741)
T 2ecf_A 262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN 340 (741)
T ss_dssp EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence 789999988 77655443 47788999999 999 6665543 56799999999987776655432 345
Q ss_pred EEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeE
Q 012799 286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365 (456)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 365 (456)
.++|+|+ ++++++++.||.+.+|.+..... ...+..|...+..
T Consensus 341 ~~~~spd------------------------------------g~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~ 383 (741)
T 2ecf_A 341 SLRFLDD------------------------------------GSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDE 383 (741)
T ss_dssp CCEECTT------------------------------------SCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEE
T ss_pred ceEECCC------------------------------------CeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEe
Confidence 7788887 45688889999888887654334 5666777788888
Q ss_pred E-EECCCCCEEEE-EECCC--cEEEEeCCC-CeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecC
Q 012799 366 V-YFSPDGQWVAS-ASFDK--SIKLWNGTT-GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD 440 (456)
Q Consensus 366 ~-~~sp~~~~l~s-~~~dg--~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 440 (456)
+ .|+|+|+.|+. ++.++ .+++|++.. +.....+.. ...+.++ +|+||
T Consensus 384 ~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~---------------------------~~spd 435 (741)
T 2ecf_A 384 LLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSA---------------------------SFARN 435 (741)
T ss_dssp EEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEE---------------------------EECTT
T ss_pred EeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEE---------------------------EECCC
Confidence 7 59999998755 44455 899999864 555566654 5566777 89999
Q ss_pred CCeEEEeeC
Q 012799 441 SRLLLSGSK 449 (456)
Q Consensus 441 g~~l~s~s~ 449 (456)
|++|+....
T Consensus 436 g~~l~~~~~ 444 (741)
T 2ecf_A 436 ASVYVDSWS 444 (741)
T ss_dssp SSEEEEEEE
T ss_pred CCEEEEEec
Confidence 998887644
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=1.8e-24 Score=214.99 Aligned_cols=273 Identities=12% Similarity=0.114 Sum_probs=202.5
Q ss_pred ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-----CC
Q 012799 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT-----GK 183 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~ 183 (456)
..|.+++|+|| +.++.+. ++.|++||+.+++.. .+..+...+.+++|+|||++|+++ .++.|.+|++.+ ++
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 57999999999 6666554 589999999887654 445577789999999999999985 679999999998 76
Q ss_pred CccccccCcccc--------------eEEEEecccccCCCCCEEEEEe--------------------------------
Q 012799 184 PSGNPLSGHKKW--------------ITGISWEPVHLNAPCRRFVSAS-------------------------------- 217 (456)
Q Consensus 184 ~~~~~~~~~~~~--------------v~~~~~~~~~~~~~~~~l~~~~-------------------------------- 217 (456)
... ....+... +.++.|+| +|++|++++
T Consensus 158 ~~~-~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-----Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~ 231 (706)
T 2z3z_A 158 AIA-VTIDGTETLVYGQAVHQREFGIEKGTFWSP-----KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP 231 (706)
T ss_dssp CEE-SCSCCBTTEEESSCCGGGCTTCCCSEEECT-----TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred cEE-eccCCCCCeEcccchhhhhcCCCceEEECC-----CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence 543 22222222 47899999 999999987
Q ss_pred -CCCcEEEEECCCCeEEEEec--CcCccEEEEEeCCCC-eEEEEeCCC-----cEEEEECCCCeEEEEee-c-CCc---c
Q 012799 218 -KDGDARIWDVSLRKCVICLS--GHTLAVTCVKWGGDG-VIYTGSQDC-----TIKVWETTQGKLIRELK-G-HGH---W 283 (456)
Q Consensus 218 -~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~l~~~~~dg-----~i~iwd~~~~~~~~~~~-~-~~~---~ 283 (456)
.+..|++||+.+++...... .+...+.+++|+|+| .+++++.++ .|++||+.+++....+. . +.. .
T Consensus 232 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 232 SHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp CCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred CCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence 44679999999988655442 466789999999999 687777665 89999999984333332 1 221 2
Q ss_pred eEEEEecC--cceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccc
Q 012799 284 VNSLALST--EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361 (456)
Q Consensus 284 i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 361 (456)
+..+.|+| + +.+++++..|+.+++|++.........+..+..
T Consensus 312 ~~~~~~sp~~d------------------------------------g~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~ 355 (706)
T 2z3z_A 312 LHPLTFLPGSN------------------------------------NQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEW 355 (706)
T ss_dssp CSCCEECTTCS------------------------------------SEEEEEECTTSSCEEEEEETTSCEEEECCCSSS
T ss_pred cCCceeecCCC------------------------------------CEEEEEEccCCccEEEEEECCCCEEEecCCCCe
Confidence 35677877 6 456888889999999987644445555667777
Q ss_pred cEeE-EEECCCCCEEEEEECC-C----cEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccce
Q 012799 362 LVNH-VYFSPDGQWVASASFD-K----SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLY 435 (456)
Q Consensus 362 ~v~~-~~~sp~~~~l~s~~~d-g----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (456)
.+.. ++|+|+|+.|+.++.+ + .|..||..+++ ...+. |...+.++
T Consensus 356 ~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~--------------------------- 406 (706)
T 2z3z_A 356 EVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRT--------------------------- 406 (706)
T ss_dssp CEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEE---------------------------
T ss_pred EEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEE---------------------------
Confidence 7876 7999999987665544 4 67777877765 33333 56677777
Q ss_pred eEecCCCeEEEeeCC----CceEEC
Q 012799 436 SWSADSRLLLSGSKD----STLKVT 456 (456)
Q Consensus 436 ~~s~dg~~l~s~s~D----g~v~iW 456 (456)
+|+|||++|+.+..+ +.|++|
T Consensus 407 ~~spdg~~l~~~~~~~~~p~~i~l~ 431 (706)
T 2z3z_A 407 QLSPDGSAIIDIFQSPTVPRKVTVT 431 (706)
T ss_dssp EECTTSSEEEEEEECSSCSCEEEEE
T ss_pred EECCCCCEEEEEecCCCCCcEEEEE
Confidence 899999988876544 457776
No 141
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=3e-24 Score=221.73 Aligned_cols=277 Identities=15% Similarity=0.103 Sum_probs=221.0
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC-CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 179 (456)
...+.+|...+.++.|+++ .++++++.|+.+.||.+.. +.....+..|. .+..++|+|+|+.|+++ .++.|.+|++
T Consensus 196 ~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~ 272 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNP 272 (1045)
T ss_dssp EEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECT
T ss_pred eEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecC
Confidence 4456899999999999998 6677778889999998753 44455555555 46778999999999887 4889999998
Q ss_pred CCCCCccccccC-----------cccceEEEEec-ccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCc-cEEEE
Q 012799 180 QTGKPSGNPLSG-----------HKKWITGISWE-PVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL-AVTCV 246 (456)
Q Consensus 180 ~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~ 246 (456)
...... .+.. |...+.+++|+ | +|+.+++++ ++.+++|++..++... +..|.. .+..+
T Consensus 273 ~~~~l~--~l~~~~~~~~~~~~~~~~~v~~~~~S~p-----dG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~ 343 (1045)
T 1k32_A 273 DTEKIE--KIEIGDLESPEDRIISIPSKFAEDFSPL-----DGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRR 343 (1045)
T ss_dssp TTCCEE--ECCCCCCCBCCSEEEECGGGGEEEEEEC-----GGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEE
T ss_pred CceEee--eeccCcccccccccccccccceeeecCC-----CCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEee
Confidence 443322 2222 34468899999 8 889898888 7899999998876543 566777 89999
Q ss_pred EeCCCC-eEEEEeCCCcEE-EEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhc
Q 012799 247 KWGGDG-VIYTGSQDCTIK-VWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324 (456)
Q Consensus 247 ~~~~~~-~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (456)
+|+ +| .++.++.++.+. +||+.+++.... ..+...+..++|+|+
T Consensus 344 ~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l-~~~~~~~~~~~~SpD-------------------------------- 389 (1045)
T 1k32_A 344 GGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRN-------------------------------- 389 (1045)
T ss_dssp CSS-SEEEEEEEETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTT--------------------------------
T ss_pred eEc-CCCeEEEEECCCceEEEEECCCCCceEe-cCCccceeeeEECCC--------------------------------
Confidence 999 88 788888888888 999988765443 367788999999998
Q ss_pred cCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCC----------cEEEEeCCCCeE
Q 012799 325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK----------SIKLWNGTTGKF 394 (456)
Q Consensus 325 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg----------~i~iwd~~~~~~ 394 (456)
++++++++.++.|++||+.++. ......+|...+.+++|||||++|++++.++ .|++||+.+++
T Consensus 390 ----G~~la~~~~~~~v~~~d~~tg~-~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~- 463 (1045)
T 1k32_A 390 ----GKFAVVANDRFEIMTVDLETGK-PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK- 463 (1045)
T ss_dssp ----SSEEEEEETTSEEEEEETTTCC-EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-
T ss_pred ----CCEEEEECCCCeEEEEECCCCc-eEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-
Confidence 6679999999999999986554 3444557888899999999999998887654 89999999887
Q ss_pred EEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 395 VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 395 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+..+..|...+..+ +|+|||++|+.++.++..++|
T Consensus 464 ~~~l~~~~~~~~~~---------------------------~~spdG~~l~~~s~~~~~~~~ 498 (1045)
T 1k32_A 464 IFAATTENSHDYAP---------------------------AFDADSKNLYYLSYRSLDPSP 498 (1045)
T ss_dssp EEECSCSSSBEEEE---------------------------EECTTSCEEEEEESCCCCCEE
T ss_pred EEEeeCCCcccCCc---------------------------eEcCCCCEEEEEecccCCcCc
Confidence 66777788888888 899999999999987766554
No 142
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.93 E-value=2.1e-24 Score=209.47 Aligned_cols=261 Identities=11% Similarity=0.009 Sum_probs=191.8
Q ss_pred cccEEEEEECCCCCeEEEEEC-CCcEEEEeCCCCcceeEEecCC-CCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCC-
Q 012799 108 TEAVLSVAFSPDGRQLASGSG-DTTVRLWDLNTQTPMFKCTGHK-NWVLCIAWSADGKHLVSGSK---AGELQCWDPQT- 181 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~-d~~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~- 181 (456)
..+|.+++|+|||+.||+++. ||+++||++++++. ..+..|. ..+..++|+|| +.+++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 567999999999999999886 99999999966554 4455555 68999999999 77777765 45556655433
Q ss_pred -CCCccccccCcccceEEEEecccccCCCCCE-EEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe
Q 012799 182 -GKPSGNPLSGHKKWITGISWEPVHLNAPCRR-FVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS 258 (456)
Q Consensus 182 -~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~ 258 (456)
........... .+...+|+| +++. +++.+.++.+.+||+.+++.......+. .+++|+|+| .+++++
T Consensus 99 ~~g~~~~l~~~~--~~~~~~~s~-----dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~ 168 (582)
T 3o4h_A 99 RPGEEQRLEAVK--PMRILSGVD-----TGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLG 168 (582)
T ss_dssp STTCCEECTTSC--SBEEEEEEE-----CSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEE
T ss_pred CCCccccccCCC--CceeeeeCC-----CCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEE
Confidence 21111122221 233557777 5543 3334444556699999887665544333 789999999 777677
Q ss_pred CC----CcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799 259 QD----CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (456)
Q Consensus 259 ~d----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (456)
.+ +.|++||+.+++.. .+..+...+..++|+|+ ++.|++
T Consensus 169 ~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpD------------------------------------G~~l~~ 211 (582)
T 3o4h_A 169 FFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPG------------------------------------MKVTAG 211 (582)
T ss_dssp EEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTT------------------------------------SCEEEE
T ss_pred EcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCC------------------------------------CCEEEE
Confidence 66 78999999988764 56677888999999998 566888
Q ss_pred EeCCC--cEEEEecCCCCCCccccccccccEeEEE--------ECCCCCEEEEEECCCcEEEEeCCCCeEEEEEeccccc
Q 012799 335 GSDDF--TMFLWEPAVSKQPKTRMTGHQQLVNHVY--------FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP 404 (456)
Q Consensus 335 ~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~--------~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 404 (456)
+..++ .|++||+..+... .+.+|...+..++ |+|||.++++++.||.+++|++ |+.+. .+.+.
T Consensus 212 ~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~ 284 (582)
T 3o4h_A 212 LETAREARLVTVDPRDGSVE--DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGN 284 (582)
T ss_dssp EECSSCEEEEEECTTTCCEE--ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSE
T ss_pred ccCCCeeEEEEEcCCCCcEE--EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCc
Confidence 88888 8999998765433 5667777676677 9999998999999999999999 76554 34466
Q ss_pred EEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCc
Q 012799 405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDST 452 (456)
Q Consensus 405 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~ 452 (456)
+.++ +|+ ||+++++++.+.+
T Consensus 285 v~~~---------------------------~~s-dg~~l~~~s~~~~ 304 (582)
T 3o4h_A 285 HGRV---------------------------VLW-RGKLVTSHTSLST 304 (582)
T ss_dssp EEEE---------------------------EEE-TTEEEEEEEETTE
T ss_pred eEEE---------------------------Eec-CCEEEEEEcCCCC
Confidence 7777 889 9999998887754
No 143
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=6e-24 Score=211.87 Aligned_cols=278 Identities=13% Similarity=0.126 Sum_probs=194.3
Q ss_pred cccccccCCcc---cEEEEEECCCCCeEEEEECC---------CcEEEEeCCCCcceeEEe---cCCCCEEEEEEcCCCC
Q 012799 99 RCSATIAGHTE---AVLSVAFSPDGRQLASGSGD---------TTVRLWDLNTQTPMFKCT---GHKNWVLCIAWSADGK 163 (456)
Q Consensus 99 ~~~~~l~~h~~---~V~~~~~s~~~~~l~~~~~d---------~~v~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~ 163 (456)
++...+.+|.. .|.+++|||||++||+++.+ +.+++||+.+++. ..+. +|...+..++|+|||+
T Consensus 48 ~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~ 126 (723)
T 1xfd_A 48 TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ 126 (723)
T ss_dssp CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT
T ss_pred cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC
Confidence 34455566665 49999999999999999864 7788999998875 3333 4455689999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCCCccccccCcccc------------------eEEEEecccccCCCCCEEEEEeCCC-----
Q 012799 164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKW------------------ITGISWEPVHLNAPCRRFVSASKDG----- 220 (456)
Q Consensus 164 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~------------------v~~~~~~~~~~~~~~~~l~~~~~dg----- 220 (456)
.|++++. +.|++||+.+++... ....+... +.++.|+| +|+.|++++.|+
T Consensus 127 ~la~~~~-~~i~~~~~~~g~~~~-~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-----Dg~~la~~~~~~~~~~~ 199 (723)
T 1xfd_A 127 QLIFIFE-NNIYYCAHVGKQAIR-VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-----DGTRLAYAAINDSRVPI 199 (723)
T ss_dssp CEEEEET-TEEEEESSSSSCCEE-EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-----TSSEEEEEEEECTTSCE
T ss_pred EEEEEEC-CeEEEEECCCCceEE-EecCCCCCceECcccceeEEEEeccCcceEEECC-----CCCEEEEEEECCCccce
Confidence 9999886 799999999887653 22322222 37899999 999999987653
Q ss_pred -----------------------------cEEEEECCCCeEEEEecCc------CccEEEEEeCCCC-eEEEEeC----C
Q 012799 221 -----------------------------DARIWDVSLRKCVICLSGH------TLAVTCVKWGGDG-VIYTGSQ----D 260 (456)
Q Consensus 221 -----------------------------~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~-~l~~~~~----d 260 (456)
.|++||+.+++....+..+ ...+..++|+|+| .+++... +
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 279 (723)
T 1xfd_A 200 MELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNV 279 (723)
T ss_dssp EEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCE
T ss_pred EEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCe
Confidence 7999999988765566544 5679999999999 5545433 3
Q ss_pred CcEEEEECCCCeEEEEeec-CCcce----EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE-
Q 012799 261 CTIKVWETTQGKLIRELKG-HGHWV----NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS- 334 (456)
Q Consensus 261 g~i~iwd~~~~~~~~~~~~-~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 334 (456)
..|++||+.+++....+.. +...+ ..++|+|+ ++.|+.
T Consensus 280 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spd------------------------------------g~~l~~~ 323 (723)
T 1xfd_A 280 SILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKD------------------------------------GRKFFFI 323 (723)
T ss_dssp EEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTT------------------------------------SCSEEEE
T ss_pred EEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCC------------------------------------CCeEEEE
Confidence 5799999999887666543 23333 26788887 343443
Q ss_pred -EeCCC------cEEEEecCCCCC--CccccccccccEeE-EEECCCCCEEEEEECC---CcEEEEeCCCC--eEEEEEe
Q 012799 335 -GSDDF------TMFLWEPAVSKQ--PKTRMTGHQQLVNH-VYFSPDGQWVASASFD---KSIKLWNGTTG--KFVAVFR 399 (456)
Q Consensus 335 -~~~dg------~i~iwd~~~~~~--~~~~~~~~~~~v~~-~~~sp~~~~l~s~~~d---g~i~iwd~~~~--~~~~~~~ 399 (456)
+..++ .|++||+..... ....+..+...+.. ++|+|||+.|+..+.+ +.+++|++... .....+.
T Consensus 324 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 403 (723)
T 1xfd_A 324 RAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLS 403 (723)
T ss_dssp EEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSS
T ss_pred EecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceec
Confidence 45666 577777323333 12333333334444 6999999998876655 78999987642 1233333
Q ss_pred c---ccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEe
Q 012799 400 G---HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG 447 (456)
Q Consensus 400 ~---~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~ 447 (456)
. |...+..+ +|+|||++|+..
T Consensus 404 ~~~~~~~~~~~~---------------------------~~spdg~~l~~~ 427 (723)
T 1xfd_A 404 CDLVENCTYFSA---------------------------SFSHSMDFFLLK 427 (723)
T ss_dssp TTSSSSCCCCEE---------------------------EECTTSSEEEEE
T ss_pred ccccCCCCeEEE---------------------------EECCCCCEEEEE
Confidence 2 45556666 899999987764
No 144
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=8.4e-24 Score=186.81 Aligned_cols=237 Identities=19% Similarity=0.184 Sum_probs=180.1
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCC-CcceeEEecC-CCCEEEEEEcCCCCEEEEEeC--CC--eE
Q 012799 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-QTPMFKCTGH-KNWVLCIAWSADGKHLVSGSK--AG--EL 174 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~--dg--~i 174 (456)
...+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|++++|++++. ++ .|
T Consensus 34 ~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l 112 (297)
T 2ojh_A 34 MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAI 112 (297)
T ss_dssp EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEE
T ss_pred eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceE
Confidence 345567899999999999999999987 78999999998 7776666555 477899999999999999983 34 45
Q ss_pred EEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEE-EEeCCCcEEEEECCC-CeEEEEecCcCccEEEEEeCCCC
Q 012799 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFV-SASKDGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDG 252 (456)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~ 252 (456)
..|+..++... .+..+ ..+..++|+| +++.++ +++.++.+++|+++. ......+..+...+.+++|+|++
T Consensus 113 ~~~~~~~~~~~--~~~~~-~~~~~~~~sp-----dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 184 (297)
T 2ojh_A 113 YLLPSTGGTPR--LMTKN-LPSYWHGWSP-----DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDG 184 (297)
T ss_dssp EEEETTCCCCE--ECCSS-SSEEEEEECT-----TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTS
T ss_pred EEEECCCCceE--EeecC-CCccceEECC-----CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCC
Confidence 55555555432 23333 3488899999 888877 778899999998642 33445666788899999999999
Q ss_pred -eEEEEe-CCCcEEEEECC-CCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCC
Q 012799 253 -VIYTGS-QDCTIKVWETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (456)
Q Consensus 253 -~l~~~~-~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (456)
.+++++ .++.+++|++. .+.....+..+...+..+.|+|+ +
T Consensus 185 ~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~d------------------------------------g 228 (297)
T 2ojh_A 185 RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPS------------------------------------G 228 (297)
T ss_dssp SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTT------------------------------------S
T ss_pred CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCC------------------------------------C
Confidence 566555 58999999886 45666777777888999999998 5
Q ss_pred CEEEEEeCC-----------CcEEEEecCCCCCC-ccccccccccEeEEEECCCCCEEEEEECCC
Q 012799 330 ERLVSGSDD-----------FTMFLWEPAVSKQP-KTRMTGHQQLVNHVYFSPDGQWVASASFDK 382 (456)
Q Consensus 330 ~~l~~~~~d-----------g~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg 382 (456)
+++++++.+ +.|++||+...... +....+|...+.+++|+|+|++|++++.+.
T Consensus 229 ~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 229 DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 557776655 56999997765432 223346788899999999999988887653
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=2.8e-22 Score=181.06 Aligned_cols=244 Identities=14% Similarity=0.194 Sum_probs=172.8
Q ss_pred CCcccEEEEEECCCCCeEEEEECC-CcEEEEeCC--CCc--ceeEEecCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEeC
Q 012799 106 GHTEAVLSVAFSPDGRQLASGSGD-TTVRLWDLN--TQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSK-AGELQCWDP 179 (456)
Q Consensus 106 ~h~~~V~~~~~s~~~~~l~~~~~d-~~v~vwd~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~ 179 (456)
.|...+.+++|+|+|++|++++.+ +.|.+|++. +++ .+..+..+. .+..++|+|++++|++++. ++.|.+||+
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence 467789999999999999988876 899999997 444 333444333 7899999999998877665 889999999
Q ss_pred CCC---CCccccccCcccceEEEEecccccCCCCCEEEEEe-CCCcEEEEECCC-CeEEE----Eec-CcCccEEEEEeC
Q 012799 180 QTG---KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSL-RKCVI----CLS-GHTLAVTCVKWG 249 (456)
Q Consensus 180 ~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~----~~~-~~~~~v~~~~~~ 249 (456)
..+ +... .. .....+.+++|+| +++.+++++ .++.|++||+.+ ++... .+. .....+.+++|+
T Consensus 114 ~~~~~~~~~~-~~-~~~~~~~~~~~s~-----dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (343)
T 1ri6_A 114 EDGLPVGVVD-VV-EGLDGCHSANISP-----DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH 186 (343)
T ss_dssp ETTEEEEEEE-EE-CCCTTBCCCEECT-----TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEEC
T ss_pred CCCccccccc-cc-cCCCCceEEEECC-----CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEEC
Confidence 533 2221 12 2334578889998 888888877 899999999987 54432 222 234578899999
Q ss_pred CCC-eEEEEe-CCCcEEEEECCC--CeE--EEEeec---C---CcceEEEEecCcceeeeccccCCCCccCChHHHHHHH
Q 012799 250 GDG-VIYTGS-QDCTIKVWETTQ--GKL--IRELKG---H---GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA 317 (456)
Q Consensus 250 ~~~-~l~~~~-~dg~i~iwd~~~--~~~--~~~~~~---~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (456)
|++ .+++++ .++.|.+||+.. ++. ...+.. . ...+..++|+|+
T Consensus 187 pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d------------------------- 241 (343)
T 1ri6_A 187 PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD------------------------- 241 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT-------------------------
T ss_pred CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCC-------------------------
Confidence 999 565554 789999999953 432 222221 1 234567888887
Q ss_pred HhhhhhccCCCCCEEE-EEeCCCcEEEEecCCCC---CCccccccccccEeEEEECCCCCEEEEEE-CCCcEEEE--eCC
Q 012799 318 LERYNKIKGNAPERLV-SGSDDFTMFLWEPAVSK---QPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLW--NGT 390 (456)
Q Consensus 318 ~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iw--d~~ 390 (456)
+++++ ++..++.|.+||+.... .....+..+.. +..++|+|+|++|++++ .++.|.+| |..
T Consensus 242 -----------g~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~ 309 (343)
T 1ri6_A 242 -----------GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGE 309 (343)
T ss_dssp -----------SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETT
T ss_pred -----------CCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 44455 55579999999987322 12222333333 88999999999888877 68999999 555
Q ss_pred CCeE
Q 012799 391 TGKF 394 (456)
Q Consensus 391 ~~~~ 394 (456)
+++.
T Consensus 310 ~g~~ 313 (343)
T 1ri6_A 310 QGLL 313 (343)
T ss_dssp TTEE
T ss_pred Ccee
Confidence 6654
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=6.2e-24 Score=211.11 Aligned_cols=263 Identities=13% Similarity=0.132 Sum_probs=191.7
Q ss_pred EEEEEECCCCCeEEEEECCCcEEEEeCCCCcce-eEEecCC-----------------CCEEEEEEcCCCCEEEEEeCCC
Q 012799 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-FKCTGHK-----------------NWVLCIAWSADGKHLVSGSKAG 172 (456)
Q Consensus 111 V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~-~~~~~~~-----------------~~v~~~~~~~~~~~l~s~~~dg 172 (456)
+..+.|. |+.+++++.|+ | +||+.+++.+ ..+..+. ..|.+++|+|| +.++.+. ++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 4457787 66777777888 8 9999998873 3333332 56999999999 6666654 59
Q ss_pred eEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC-----CeEEEEecCcCcc-----
Q 012799 173 ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-----RKCVICLSGHTLA----- 242 (456)
Q Consensus 173 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~----- 242 (456)
.|++||+.+++... +..+...+.+++|+| +|+.++++ .++.|++||+.+ ++.......+...
T Consensus 102 ~i~~~d~~~~~~~~--l~~~~~~~~~~~~Sp-----dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 173 (706)
T 2z3z_A 102 GLVGFDMLARKVTY--LFDTNEETASLDFSP-----VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ 173 (706)
T ss_dssp EEEEEETTTTEEEE--EECCTTCCTTCEECT-----TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred EEEEEECCCCceEE--ccCCcccccCCcCCC-----CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence 99999998876542 445566788899999 99999985 679999999998 7766544443333
Q ss_pred ---------EEEEEeCCCC-eEEEEe---------------------------------CCCcEEEEECCCCeEEEEee-
Q 012799 243 ---------VTCVKWGGDG-VIYTGS---------------------------------QDCTIKVWETTQGKLIRELK- 278 (456)
Q Consensus 243 ---------v~~~~~~~~~-~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~~- 278 (456)
+.++.|+|+| .|++++ .+..|++||+.+++......
T Consensus 174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 253 (706)
T 2z3z_A 174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG 253 (706)
T ss_dssp CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence 4789999999 777776 44679999999988655443
Q ss_pred -cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC-----cEEEEecCCCCCC
Q 012799 279 -GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF-----TMFLWEPAVSKQP 352 (456)
Q Consensus 279 -~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~ 352 (456)
.+...+..++|+|+ ++++++++.++ .|++||+.++...
T Consensus 254 ~~~~~~~~~~~~spd------------------------------------g~~l~~~~~~~~~~~~~v~~~d~~~g~~~ 297 (706)
T 2z3z_A 254 EPKEKFLTNLSWSPD------------------------------------ENILYVAEVNRAQNECKVNAYDAETGRFV 297 (706)
T ss_dssp SCTTCEEEEEEECTT------------------------------------SSEEEEEEECTTSCEEEEEEEETTTCCEE
T ss_pred CCCceeEeeEEEECC------------------------------------CCEEEEEEeCCCCCeeEEEEEECCCCcee
Confidence 35667899999998 55677777665 8999998765332
Q ss_pred ccccc-cccc---cEeEEEECC--CCCEEEEEECCCcEEEEeCC-CCeEEEEEecccccEEE-EEeeeeeeecCCCCcee
Q 012799 353 KTRMT-GHQQ---LVNHVYFSP--DGQWVASASFDKSIKLWNGT-TGKFVAVFRGHVGPVYQ-IRFELIYCFRYPSNFYC 424 (456)
Q Consensus 353 ~~~~~-~~~~---~v~~~~~sp--~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~-i~~~~~~~~~~~~~~~~ 424 (456)
..... .+.. .+..++|+| ||++|++++.||.+++|++. +++.+..+..|...+.+ +
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~---------------- 361 (706)
T 2z3z_A 298 RTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFA---------------- 361 (706)
T ss_dssp EEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEE----------------
T ss_pred eEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeee----------------
Confidence 22221 2222 246789999 99999999999999999876 67777778777777776 5
Q ss_pred eecccccccceeEecCCCeEEEeeCC
Q 012799 425 VVDMSCCMSLYSWSADSRLLLSGSKD 450 (456)
Q Consensus 425 ~~~~~~~~~~~~~s~dg~~l~s~s~D 450 (456)
+|+|||+.|+.++.+
T Consensus 362 -----------~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 362 -----------GFDPKGTRLYFESTE 376 (706)
T ss_dssp -----------EECTTSSEEEEEESS
T ss_pred -----------EEcCCCCEEEEEecC
Confidence 899999987766554
No 147
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.91 E-value=4.8e-23 Score=186.66 Aligned_cols=271 Identities=12% Similarity=0.055 Sum_probs=189.4
Q ss_pred EEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCC-CCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCCcccccc
Q 012799 113 SVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHK-NWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPLS 190 (456)
Q Consensus 113 ~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~ 190 (456)
.++++++++++++++.++.|++||..+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++.......
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45788899999999999999999999998887776443 2578999999998665 455689999999998876543222
Q ss_pred Cc-----ccceEEEEecccccCCCCCEEEEEeCC------------CcEEEEECCCCe---EEEEecCcCccEEEEEeCC
Q 012799 191 GH-----KKWITGISWEPVHLNAPCRRFVSASKD------------GDARIWDVSLRK---CVICLSGHTLAVTCVKWGG 250 (456)
Q Consensus 191 ~~-----~~~v~~~~~~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~ 250 (456)
.+ ...+..++|+| +++++++++.+ +.|.+||+.+++ .+..+. +...+.+++|+|
T Consensus 84 ~~~~~~~~~~~~~~~~sp-----dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~ 157 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISP-----DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAAD 157 (349)
T ss_dssp CCSTTEEEECSSCEEECT-----TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECT
T ss_pred ccccccccccccceEECC-----CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECC
Confidence 22 23467888988 99999998865 899999998743 233333 334688899999
Q ss_pred CCeEEEEeCCCcEEEEECCCCeEEEEeecCCc------------------------ceEEEEecCcceeeeccccCCCCc
Q 012799 251 DGVIYTGSQDCTIKVWETTQGKLIRELKGHGH------------------------WVNSLALSTEYALRTGAFDHTGKQ 306 (456)
Q Consensus 251 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------------------~i~~~~~~~~~~~~~~~~~~~~~~ 306 (456)
++.+++++ +.|.+||+.+++.+..+..... ....++++++.......
T Consensus 158 dg~l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~------- 228 (349)
T 1jmx_B 158 DGSLYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT------- 228 (349)
T ss_dssp TSCEEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC-------
T ss_pred CCcEEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc-------
Confidence 99655543 3499999999988777653320 11122222211000000
Q ss_pred cCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECC-CCCEEEEEECCCcEE
Q 012799 307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIK 385 (456)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~ 385 (456)
......++.....++.+.+|++ ..+...+..++|+| +|++++++ ++.|.
T Consensus 229 ------------------~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~sp~dg~~l~~~--~~~v~ 278 (349)
T 1jmx_B 229 ------------------ADLLYGYLSVDLKTGKTHTQEF----------ADLTELYFTGLRSPKDPNQIYGV--LNRLA 278 (349)
T ss_dssp ------------------CEEEEEEEEEETTTCCEEEEEE----------EECSSCEEEEEECSSCTTEEEEE--ESEEE
T ss_pred ------------------cccceeEEEEeccCCcEEeccc----------ccCCCcceeeEecCCCCCEEEEE--cCeEE
Confidence 0000011223344555666653 22455688999999 99999888 88999
Q ss_pred EEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 386 LWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 386 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+||+.+++.+..+... ..+.++ +|+|||++|++++.++.|++|
T Consensus 279 ~~d~~~~~~~~~~~~~-~~~~~~---------------------------~~s~dg~~l~~~~~~~~v~v~ 321 (349)
T 1jmx_B 279 KYDLKQRKLIKAANLD-HTYYCV---------------------------AFDKKGDKLYLGGTFNDLAVF 321 (349)
T ss_dssp EEETTTTEEEEEEECS-SCCCEE---------------------------EECSSSSCEEEESBSSEEEEE
T ss_pred EEECccCeEEEEEcCC-CCccce---------------------------EECCCCCEEEEecCCCeEEEE
Confidence 9999999988877643 335566 899999999998899999987
No 148
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.91 E-value=3.6e-22 Score=185.26 Aligned_cols=181 Identities=18% Similarity=0.167 Sum_probs=145.2
Q ss_pred CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCC----------ccee-----EEecCCCCEEEEEEcCCCCEEE----E
Q 012799 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ----------TPMF-----KCTGHKNWVLCIAWSADGKHLV----S 167 (456)
Q Consensus 107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~----------~~~~-----~~~~~~~~v~~~~~~~~~~~l~----s 167 (456)
+...++.+++++++.++++++.|+ +++|+.... .... ....+...|.+++|+|++++|+ +
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 345689999999999999999887 899875311 0111 1123567899999999999999 7
Q ss_pred EeCCCeEEEEeCCCC-----CCc-----cccccCcccceEEEEecccccCCC-CCEEEEEeCCCcEEEEECCCCeEEEEe
Q 012799 168 GSKAGELQCWDPQTG-----KPS-----GNPLSGHKKWITGISWEPVHLNAP-CRRFVSASKDGDARIWDVSLRKCVICL 236 (456)
Q Consensus 168 ~~~dg~i~vwd~~~~-----~~~-----~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~ 236 (456)
|+.|+.|++||++++ +.. ...+.+|...|.+++|+| + +.+|++++.||.|++||++++......
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p-----~~~~~las~s~Dg~v~iwD~~~~~~~~~~ 188 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNP-----TVPSMVAVCLADGSIAVLQVTETVKVCAT 188 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECS-----SCTTEEEEEETTSCEEEEEESSSEEEEEE
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECC-----CCCCEEEEEECCCeEEEEEcCCCcceeec
Confidence 888999999998764 111 234567999999999999 5 789999999999999999999877777
Q ss_pred cCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecC-------CcceEEEEecCcce
Q 012799 237 SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGH-------GHWVNSLALSTEYA 294 (456)
Q Consensus 237 ~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~~~~~~ 294 (456)
.+|...|.+++|+|+| +|++|+.||.|++||.+ ++....+..+ ...+.++.|+++..
T Consensus 189 ~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~ 253 (434)
T 2oit_A 189 LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYV 253 (434)
T ss_dssp ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTE
T ss_pred cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCce
Confidence 7889999999999999 99999999999999998 5555555433 23788999988743
No 149
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=1e-21 Score=177.86 Aligned_cols=259 Identities=11% Similarity=0.085 Sum_probs=176.2
Q ss_pred CCcEEEEeCC--CCccee-EEecCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCCCcc-ccccCcccceEEEEe
Q 012799 129 DTTVRLWDLN--TQTPMF-KCTGHKNWVLCIAWSADGKHLVSGSK---AGELQCWDPQTGKPSG-NPLSGHKKWITGISW 201 (456)
Q Consensus 129 d~~v~vwd~~--~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~ 201 (456)
++.|.+|+++ +++... ....+...+..++|+|+|+ |++++. ++.|.+|++.+++... .....+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 4567777664 444332 2334567788899999999 555544 6899999997765321 122345667889999
Q ss_pred cccccCCCCCEEEEEe-CCCcEEEEECCC-C--eEEEEecC---------cCccEEEEEeCCCC-eEEEEeCCCcEEEEE
Q 012799 202 EPVHLNAPCRRFVSAS-KDGDARIWDVSL-R--KCVICLSG---------HTLAVTCVKWGGDG-VIYTGSQDCTIKVWE 267 (456)
Q Consensus 202 ~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~--~~~~~~~~---------~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd 267 (456)
+| +++++++++ .++.|.+|++.. + +.+..+.. ....+.+++|+|+| .+++...++.|.+||
T Consensus 94 sp-----dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~ 168 (347)
T 3hfq_A 94 DE-----ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYN 168 (347)
T ss_dssp ET-----TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEE
T ss_pred CC-----CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEE
Confidence 99 999888887 679999999962 2 33333321 12348899999999 555556688999999
Q ss_pred CC-CCeEEE--Eeec-CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCE-EEEEeCCCcEE
Q 012799 268 TT-QGKLIR--ELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER-LVSGSDDFTMF 342 (456)
Q Consensus 268 ~~-~~~~~~--~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~ 342 (456)
+. +++... .+.. .......++|+|+ +++ ++++..++.+.
T Consensus 169 ~~~~g~~~~~~~~~~~~g~~p~~~~~spd------------------------------------g~~l~v~~~~~~~v~ 212 (347)
T 3hfq_A 169 VSDAGQLSEQSVLTMEAGFGPRHLVFSPD------------------------------------GQYAFLAGELSSQIA 212 (347)
T ss_dssp ECTTSCEEEEEEEECCTTCCEEEEEECTT------------------------------------SSEEEEEETTTTEEE
T ss_pred ECCCCcEEEeeeEEcCCCCCCceEEECCC------------------------------------CCEEEEEeCCCCEEE
Confidence 98 554332 2222 2335677899988 443 44466788999
Q ss_pred EEecCCCCCC---ccccccc------cccEeEEEECCCCCEE-EEEECCCcEEEEeCCC---CeEEEEEecccccEEEEE
Q 012799 343 LWEPAVSKQP---KTRMTGH------QQLVNHVYFSPDGQWV-ASASFDKSIKLWNGTT---GKFVAVFRGHVGPVYQIR 409 (456)
Q Consensus 343 iwd~~~~~~~---~~~~~~~------~~~v~~~~~sp~~~~l-~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~i~ 409 (456)
+|++...... ....... ...+..++|+|||++| ++...++.|.+|++.. .+.+..+..+...+..+
T Consensus 213 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~- 291 (347)
T 3hfq_A 213 SLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDF- 291 (347)
T ss_dssp EEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEE-
T ss_pred EEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeE-
Confidence 9997642211 1111111 1458899999999987 5566789999999873 24555566555556677
Q ss_pred eeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCC-CceEEC
Q 012799 410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD-STLKVT 456 (456)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~D-g~v~iW 456 (456)
+|+|||++|++++.+ +.|.+|
T Consensus 292 --------------------------~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 292 --------------------------DLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp --------------------------EECTTSSEEEEEETTTTEEEEE
T ss_pred --------------------------EECCCCCEEEEEEcCCCcEEEE
Confidence 899999998888764 888887
No 150
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=8.9e-22 Score=176.97 Aligned_cols=250 Identities=10% Similarity=0.089 Sum_probs=177.6
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEEC-CCcEEEEeCCCCcc-eeEEecCCCCEEEEEEcCCCCEEEEEeCCC---eE
Q 012799 100 CSATIAGHTEAVLSVAFSPDGRQLASGSG-DTTVRLWDLNTQTP-MFKCTGHKNWVLCIAWSADGKHLVSGSKAG---EL 174 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~-d~~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg---~i 174 (456)
....+..+...+ +++|+|+|+++++++. ++.|.+||..+++. ...+..+..+..+++|+|++++++++..++ .|
T Consensus 32 ~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i 110 (331)
T 3u4y_A 32 ILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNM 110 (331)
T ss_dssp EEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEE
T ss_pred eeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccE
Confidence 334445556667 9999999997776665 88999999999887 777776766666699999999999655553 89
Q ss_pred EEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEE-eCCCc-EEEEECCCCeEE----EEecCcCccEEEEEe
Q 012799 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA-SKDGD-ARIWDVSLRKCV----ICLSGHTLAVTCVKW 248 (456)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-~~dg~-i~iwd~~~~~~~----~~~~~~~~~v~~~~~ 248 (456)
.+||+.+++.... + .......+++|+| +|++++++ ..++. |.+|++.....+ ............++|
T Consensus 111 ~v~d~~~~~~~~~-~-~~~~~~~~~~~sp-----dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 183 (331)
T 3u4y_A 111 QSYSFLKNKFIST-I-PIPYDAVGIAISP-----NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITF 183 (331)
T ss_dssp EEEETTTTEEEEE-E-ECCTTEEEEEECT-----TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEE
T ss_pred EEEECCCCCeEEE-E-ECCCCccceEECC-----CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEE
Confidence 9999998876542 2 2334568999999 88755554 55688 999998754332 112233456899999
Q ss_pred CCCC-eEEEE-eCCCcEEEEECCCCeE---EEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhh
Q 012799 249 GGDG-VIYTG-SQDCTIKVWETTQGKL---IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK 323 (456)
Q Consensus 249 ~~~~-~l~~~-~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (456)
+|+| .++++ ..++.|.+||+.+++. +..+.. ...+..++++|+
T Consensus 184 spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spd------------------------------- 231 (331)
T 3u4y_A 184 TPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRD------------------------------- 231 (331)
T ss_dssp CTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTT-------------------------------
T ss_pred CCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCC-------------------------------
Confidence 9999 45554 4688999999998887 777764 456778899988
Q ss_pred ccCCCCCEEEE-EeCCCcEEEEecCCCCCC-ccccc-------cccccEeEEEECCCCCEEEEEEC-CCcEEEEeCCCCe
Q 012799 324 IKGNAPERLVS-GSDDFTMFLWEPAVSKQP-KTRMT-------GHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGTTGK 393 (456)
Q Consensus 324 ~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~-~~~~~-------~~~~~v~~~~~sp~~~~l~s~~~-dg~i~iwd~~~~~ 393 (456)
++++++ ...++.|.+||+.+.... ...+. ........++|+|+|++|++++. ++.|.+||+....
T Consensus 232 -----g~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 232 -----GSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp -----SSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred -----CCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 444544 445788999997664420 11111 11122356899999998866554 5699999997654
Q ss_pred E
Q 012799 394 F 394 (456)
Q Consensus 394 ~ 394 (456)
.
T Consensus 307 ~ 307 (331)
T 3u4y_A 307 V 307 (331)
T ss_dssp E
T ss_pred c
Confidence 3
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.90 E-value=1.3e-22 Score=202.05 Aligned_cols=268 Identities=12% Similarity=0.082 Sum_probs=190.9
Q ss_pred EEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCC---CEEEEEEcCCCCEEEEEeC---------CCeEEEEeCC
Q 012799 113 SVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN---WVLCIAWSADGKHLVSGSK---------AGELQCWDPQ 180 (456)
Q Consensus 113 ~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~s~~~---------dg~i~vwd~~ 180 (456)
+++|+|||+++++ +.|++|++||+.+++....+.+|.. .+.+++|+|||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6899999975555 4699999999999987776665543 4899999999999998876 7899999999
Q ss_pred CCCCcc-ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCcCccE---------------
Q 012799 181 TGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-SGHTLAV--------------- 243 (456)
Q Consensus 181 ~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v--------------- 243 (456)
+++... ..+ ...+..++|+| +|+.|+++. ++.|++||+.+++..... .++...+
T Consensus 99 ~g~~~~~~~l---~~~~~~~~~SP-----DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~ 169 (719)
T 1z68_A 99 NGEFVRGNEL---PRPIQYLCWSP-----VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLA 169 (719)
T ss_dssp TTEECCSSCC---CSSBCCEEECS-----STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTC
T ss_pred CCccccceec---CcccccceECC-----CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeeccc
Confidence 887621 012 24588899999 999999886 689999999888765433 2232222
Q ss_pred --EEEEeCCCC-eEEEEeCCC----------------------------------cEEEEECCCCeEE---E-----Eee
Q 012799 244 --TCVKWGGDG-VIYTGSQDC----------------------------------TIKVWETTQGKLI---R-----ELK 278 (456)
Q Consensus 244 --~~~~~~~~~-~l~~~~~dg----------------------------------~i~iwd~~~~~~~---~-----~~~ 278 (456)
.+++|+||| .|++++.|. .|++||+.+++.. . .+.
T Consensus 170 ~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 249 (719)
T 1z68_A 170 TKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIA 249 (719)
T ss_dssp SSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHH
T ss_pred CcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCC
Confidence 489999999 777776542 7889999887642 1 123
Q ss_pred cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC----CcEEEEe----cCCCC
Q 012799 279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD----FTMFLWE----PAVSK 350 (456)
Q Consensus 279 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~iwd----~~~~~ 350 (456)
.+...+..++|+|++ ..+++.... ..|.+|| +.++.
T Consensus 250 ~~~~~~~~~~~SpD~------------------------------------~~~~~~~~~~~~~~~l~~~d~~~~~~~g~ 293 (719)
T 1z68_A 250 SSDYYFSWLTWVTDE------------------------------------RVCLQWLKRVQNVSVLSICDFREDWQTWD 293 (719)
T ss_dssp TSCEEEEEEEESSSS------------------------------------EEEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred CCcceEEEeEEeCCC------------------------------------eEEEEEeccccCeEEEEEEcccCCCCCCc
Confidence 577788999999984 335553332 2488888 65544
Q ss_pred CCcccc----ccccccEe-----EEEECCCCCEEEE--EECCC--cEEEEeCCCCeEEEEEecccccEEEEEeeeeeeec
Q 012799 351 QPKTRM----TGHQQLVN-----HVYFSPDGQWVAS--ASFDK--SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR 417 (456)
Q Consensus 351 ~~~~~~----~~~~~~v~-----~~~~sp~~~~l~s--~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 417 (456)
. .... .+|...+. .++|+|||+.|+. +..+| .|.+||+.+++ ...+..+...+..+
T Consensus 294 ~-~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~--------- 362 (719)
T 1z68_A 294 C-PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINI--------- 362 (719)
T ss_dssp C-CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEE---------
T ss_pred e-EEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEE---------
Confidence 3 2333 46666666 8899999996554 44555 57777887766 44555555567666
Q ss_pred CCCCceeeecccccccceeEecCCCeEEEeeCC-----CceEEC
Q 012799 418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD-----STLKVT 456 (456)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~D-----g~v~iW 456 (456)
.++ +++.|+..+.+ +..++|
T Consensus 363 ------------------~~~-d~~~i~~~~~~~~~~~~~~~l~ 387 (719)
T 1z68_A 363 ------------------FRV-TQDSLFYSSNEFEEYPGRRNIY 387 (719)
T ss_dssp ------------------EEE-CSSEEEEEESCGGGCTTCBEEE
T ss_pred ------------------EEE-eCCEEEEEEecCCCCCceEEEE
Confidence 556 77777666654 677766
No 152
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.89 E-value=5.7e-22 Score=182.42 Aligned_cols=288 Identities=15% Similarity=0.097 Sum_probs=192.6
Q ss_pred ccccccccCCcccEEE-----EEECCCCCeEEEEEC-CC--cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe
Q 012799 98 NRCSATIAGHTEAVLS-----VAFSPDGRQLASGSG-DT--TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS 169 (456)
Q Consensus 98 ~~~~~~l~~h~~~V~~-----~~~s~~~~~l~~~~~-d~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 169 (456)
+.....|..|...... .+|+|||++|+.++. ++ .|.+||+.+++......++...+..+.|+|||+.|+.++
T Consensus 20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~ 99 (388)
T 3pe7_A 20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVK 99 (388)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEE
T ss_pred CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEe
Confidence 3445667777766666 899999999999887 66 488889988887666666666666788999999999999
Q ss_pred CCCeEEEEeCCCCCCccccccCcccceEEEEe--cccccCCCCCEEEEE----------------------eCCCcEEEE
Q 012799 170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISW--EPVHLNAPCRRFVSA----------------------SKDGDARIW 225 (456)
Q Consensus 170 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~l~~~----------------------~~dg~i~iw 225 (456)
.++.|.+||+.+++... ....+...+....| +| ++..++.. ..++.|++|
T Consensus 100 ~~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~~~~~~-----dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (388)
T 3pe7_A 100 DGRNLMRVDLATLEENV-VYQVPAEWVGYGTWVANS-----DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV 173 (388)
T ss_dssp TTTEEEEEETTTCCEEE-EEECCTTEEEEEEEEECT-----TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred CCCeEEEEECCCCccee-eeechhhcccccceeECC-----CCCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence 99999999999887543 33334444433433 45 77777642 244789999
Q ss_pred ECCCCeEEEEecCcCccEEEEEeCC-CC-eEEEEeCC------CcEEEEECCCCeEEEEeecCC-cceEEEEecCcceee
Q 012799 226 DVSLRKCVICLSGHTLAVTCVKWGG-DG-VIYTGSQD------CTIKVWETTQGKLIRELKGHG-HWVNSLALSTEYALR 296 (456)
Q Consensus 226 d~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~ 296 (456)
|+.+++... +..+...+..++|+| +| .++.+..+ ..|.++|...++......... ..+..+.|+|++
T Consensus 174 d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg--- 249 (388)
T 3pe7_A 174 DLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDG--- 249 (388)
T ss_dssp ETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTS---
T ss_pred ECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCC---
Confidence 999886544 334667789999999 88 66655543 378888887655433333222 357788899984
Q ss_pred eccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe-CCC----cEEEEecCCCCCC-cccccccccc---EeEEE
Q 012799 297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS-DDF----TMFLWEPAVSKQP-KTRMTGHQQL---VNHVY 367 (456)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg----~i~iwd~~~~~~~-~~~~~~~~~~---v~~~~ 367 (456)
+.|+..+ .++ .|++||+..+... +....++... ...++
T Consensus 250 ---------------------------------~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 296 (388)
T 3pe7_A 250 ---------------------------------SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSL 296 (388)
T ss_dssp ---------------------------------SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSE
T ss_pred ---------------------------------CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCe
Confidence 4354333 222 3999998765432 1122221110 11237
Q ss_pred ECCCCCEEEEE---------ECCCcEEEEeCCCCeEEEEEecccc-----------cEEEEEeeeeeeecCCCCceeeec
Q 012799 368 FSPDGQWVASA---------SFDKSIKLWNGTTGKFVAVFRGHVG-----------PVYQIRFELIYCFRYPSNFYCVVD 427 (456)
Q Consensus 368 ~sp~~~~l~s~---------~~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~i~~~~~~~~~~~~~~~~~~~ 427 (456)
|+|||+.|+.. ..+..|++||+.+++.. .+..+.. .+..+
T Consensus 297 ~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~------------------- 356 (388)
T 3pe7_A 297 MVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHP------------------- 356 (388)
T ss_dssp EEEEECCC------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCC-------------------
T ss_pred EccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCc-------------------
Confidence 99999987754 45668999999887753 3443433 23333
Q ss_pred ccccccceeEecCCCeEEEee-CCCceEEC
Q 012799 428 MSCCMSLYSWSADSRLLLSGS-KDSTLKVT 456 (456)
Q Consensus 428 ~~~~~~~~~~s~dg~~l~s~s-~Dg~v~iW 456 (456)
+|+|||+.|+.++ .+|...||
T Consensus 357 --------~~spDg~~l~~~s~~~g~~~l~ 378 (388)
T 3pe7_A 357 --------SFTPDDKQILFTSDVHGKPALY 378 (388)
T ss_dssp --------EECTTSSEEEEEECTTSSCEEE
T ss_pred --------cCCCCCCEEEEEecCCCceeEE
Confidence 8999999888665 47776665
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=3.5e-21 Score=174.31 Aligned_cols=249 Identities=15% Similarity=0.165 Sum_probs=173.8
Q ss_pred CCcccEEEEEECCCCCeEEEEEC---CCcEEEEeCCCCc--ceeEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEeC
Q 012799 106 GHTEAVLSVAFSPDGRQLASGSG---DTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDP 179 (456)
Q Consensus 106 ~h~~~V~~~~~s~~~~~l~~~~~---d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~ 179 (456)
.+...+..++|+|||+ |++++. ++.|++|++.+++ .+..+..+...+..++|+|+|++|++++ .++.|.+|++
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 4556778899999999 555543 6899999997665 3444455778899999999999998888 6799999999
Q ss_pred CC-CCCc--ccccc--------CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC-CCeEEE--EecC-cCccEE
Q 012799 180 QT-GKPS--GNPLS--------GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-LRKCVI--CLSG-HTLAVT 244 (456)
Q Consensus 180 ~~-~~~~--~~~~~--------~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~--~~~~-~~~~v~ 244 (456)
.. +... ..... .+...+.+++|+| +++.+++...++.|++|++. +++... .+.. ....+.
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-----dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~ 190 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-----DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPR 190 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-----TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEE
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECC-----CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCc
Confidence 63 2211 10000 0123478899999 88866666678899999998 454322 2222 234678
Q ss_pred EEEeCCCC-eEEE-EeCCCcEEEEECCC--CeE--EEEeecCC------cceEEEEecCcceeeeccccCCCCccCChHH
Q 012799 245 CVKWGGDG-VIYT-GSQDCTIKVWETTQ--GKL--IRELKGHG------HWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312 (456)
Q Consensus 245 ~~~~~~~~-~l~~-~~~dg~i~iwd~~~--~~~--~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (456)
.++|+|+| .+++ +..++.|.+|++.. ++. +..+.... ..+..++|+|+
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spd-------------------- 250 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHD-------------------- 250 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTT--------------------
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCC--------------------
Confidence 89999999 4555 45688999999874 543 22332222 34778999988
Q ss_pred HHHHHHhhhhhccCCCCCEE-EEEeCCCcEEEEecCCCC--CCccccccccccEeEEEECCCCCEEEEEECC-CcEEEE-
Q 012799 313 MKKAALERYNKIKGNAPERL-VSGSDDFTMFLWEPAVSK--QPKTRMTGHQQLVNHVYFSPDGQWVASASFD-KSIKLW- 387 (456)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d-g~i~iw- 387 (456)
++++ ++...++.|.+|++.... .....+..+...+..++|+|||++|++++.+ +.|.+|
T Consensus 251 ----------------G~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~ 314 (347)
T 3hfq_A 251 ----------------GHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYA 314 (347)
T ss_dssp ----------------SCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ----------------CCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence 4445 566678999999986332 2223334455568899999999998888765 899999
Q ss_pred -eCCCCeEEE
Q 012799 388 -NGTTGKFVA 396 (456)
Q Consensus 388 -d~~~~~~~~ 396 (456)
|..+|++..
T Consensus 315 ~d~~tg~l~~ 324 (347)
T 3hfq_A 315 RDLTSGKLSL 324 (347)
T ss_dssp ECTTTCCEEE
T ss_pred EeCCCCeEEe
Confidence 666777653
No 154
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=2.1e-21 Score=174.83 Aligned_cols=242 Identities=14% Similarity=0.091 Sum_probs=181.1
Q ss_pred cEEEEEECCCCCeEE-EEECCCcEEEEeCCCCcceeEEec-C----CCCEEEEEEcCCCCEEEEEe------------CC
Q 012799 110 AVLSVAFSPDGRQLA-SGSGDTTVRLWDLNTQTPMFKCTG-H----KNWVLCIAWSADGKHLVSGS------------KA 171 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~-~~~~d~~v~vwd~~~~~~~~~~~~-~----~~~v~~~~~~~~~~~l~s~~------------~d 171 (456)
.+.+++|+|+|++++ ++..++.|.+||+.+++.+..+.. + ...+..++|+|+|+++++++ .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 478899999998765 455678999999999888776653 2 22577899999999999886 57
Q ss_pred CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcC--ccEEEEEeC
Q 012799 172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT--LAVTCVKWG 249 (456)
Q Consensus 172 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~ 249 (456)
+.|.+||+.+++.... +. ....+.+++|+| ++++++++ ++.|++||+.+++....+..+. .+ +.|+
T Consensus 115 ~~i~v~d~~~~~~~~~-~~-~~~~~~~~~~s~-----dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~s 182 (337)
T 1pby_B 115 TRVALYDAETLSRRKA-FE-APRQITMLAWAR-----DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAE---TYAQ 182 (337)
T ss_dssp CEEEEEETTTTEEEEE-EE-CCSSCCCEEECT-----TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTT---TBCC
T ss_pred ceEEEEECCCCcEEEE-Ee-CCCCcceeEECC-----CCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCC---ceeC
Confidence 9999999988775542 22 234577888988 88888887 6899999999999887775443 32 3678
Q ss_pred CCC-eEEEEeC-CC-----------------------cEEEEECCCCeEE-EEeecCCcceEEEEecCcceeeeccccCC
Q 012799 250 GDG-VIYTGSQ-DC-----------------------TIKVWETTQGKLI-RELKGHGHWVNSLALSTEYALRTGAFDHT 303 (456)
Q Consensus 250 ~~~-~l~~~~~-dg-----------------------~i~iwd~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 303 (456)
|++ .++..+. ++ .|.+||+.+++.. ..+..+...+..++++|+
T Consensus 183 ~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~d----------- 251 (337)
T 1pby_B 183 PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPA----------- 251 (337)
T ss_dssp CBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTT-----------
T ss_pred CCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCC-----------
Confidence 887 4443332 22 4689999998764 223345556778999988
Q ss_pred CCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCc
Q 012799 304 GKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKS 383 (456)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~ 383 (456)
+.+++++ ++.|.+||+.+.+. ...+. ....+.+++|+|+|++|++++.++.
T Consensus 252 -------------------------g~~l~~~--~~~v~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~ 302 (337)
T 1pby_B 252 -------------------------KTRAFGA--YNVLESFDLEKNAS-IKRVP-LPHSYYSVNVSTDGSTVWLGGALGD 302 (337)
T ss_dssp -------------------------SSEEEEE--ESEEEEEETTTTEE-EEEEE-CSSCCCEEEECTTSCEEEEESBSSE
T ss_pred -------------------------CCEEEEe--CCeEEEEECCCCcC-cceec-CCCceeeEEECCCCCEEEEEcCCCc
Confidence 5557776 79999999765432 22222 2345789999999999999889999
Q ss_pred EEEEeCCCCeEEEEEecccc
Q 012799 384 IKLWNGTTGKFVAVFRGHVG 403 (456)
Q Consensus 384 i~iwd~~~~~~~~~~~~~~~ 403 (456)
|++||+.+++.+..+..+..
T Consensus 303 i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 303 LAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp EEEEETTTCCEEEEEECGGG
T ss_pred EEEEECcCCcEEEEEEcCCC
Confidence 99999999999888876544
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=5.8e-20 Score=167.21 Aligned_cols=258 Identities=11% Similarity=0.112 Sum_probs=176.9
Q ss_pred CcccEEEEEECCCCCeEEEEECC----CcEEEEeCCC--Cc--ceeEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEE
Q 012799 107 HTEAVLSVAFSPDGRQLASGSGD----TTVRLWDLNT--QT--PMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCW 177 (456)
Q Consensus 107 h~~~V~~~~~s~~~~~l~~~~~d----~~v~vwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vw 177 (456)
|...+..++|+|||++|++++.+ +.|.+|+++. ++ .+.....+......+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 66777889999999999999876 7999998865 33 23334445667788888 888777776 57899999
Q ss_pred eCCCCCCccccc-------------cCcccceEEEEecccccCCCCCEEEEEe-CCCcEEEEECCCCe-------E----
Q 012799 178 DPQTGKPSGNPL-------------SGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRK-------C---- 232 (456)
Q Consensus 178 d~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~-------~---- 232 (456)
++.......... ..+...+.+++|+| +++++++++ .++.|++|++.... .
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-----dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~ 200 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-----DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG 200 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-----TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-----CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence 997654332111 11223457899999 898776655 47899999887543 1
Q ss_pred --EEEecCcCccEEEEEeCCCC-eEEEEe-CCCcEEEEECCCCeE--EEEee---cCCcceEEEEecCcceeeeccccCC
Q 012799 233 --VICLSGHTLAVTCVKWGGDG-VIYTGS-QDCTIKVWETTQGKL--IRELK---GHGHWVNSLALSTEYALRTGAFDHT 303 (456)
Q Consensus 233 --~~~~~~~~~~v~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~~--~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~ 303 (456)
.............++|+|+| .+++++ .++.|.+||+.+++. +..+. .+......++|+|+
T Consensus 201 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spd----------- 269 (361)
T 3scy_A 201 TPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPD----------- 269 (361)
T ss_dssp EEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTT-----------
T ss_pred cccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCC-----------
Confidence 12223345567899999999 666666 689999999987754 22232 22344678899988
Q ss_pred CCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC--CCcEEEEecCCC-CC--CccccccccccEeEEEECCCCCEEEEE
Q 012799 304 GKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD--DFTMFLWEPAVS-KQ--PKTRMTGHQQLVNHVYFSPDGQWVASA 378 (456)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~-~~--~~~~~~~~~~~v~~~~~sp~~~~l~s~ 378 (456)
+++++++.. ++.|.+|++... .. ....+.. ...+..++|+|+|++|+++
T Consensus 270 -------------------------g~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~ 323 (361)
T 3scy_A 270 -------------------------GKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVA 323 (361)
T ss_dssp -------------------------SSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEE
T ss_pred -------------------------CCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEE
Confidence 555766554 589999998632 22 1222222 4567899999999998888
Q ss_pred E-CCCcEEEE--eCCCCeEEEEE-ecccccEEEE
Q 012799 379 S-FDKSIKLW--NGTTGKFVAVF-RGHVGPVYQI 408 (456)
Q Consensus 379 ~-~dg~i~iw--d~~~~~~~~~~-~~~~~~v~~i 408 (456)
+ .++.|.+| |..+|++.... ..+...+.++
T Consensus 324 ~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v 357 (361)
T 3scy_A 324 CRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCL 357 (361)
T ss_dssp ETTTTEEEEEEECTTTCCEEECSCCEECSSEEEE
T ss_pred ECCCCCEEEEEEECCCCcEeecceeeeCCCCeEE
Confidence 7 67899995 55677765443 2244466777
No 156
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=8.7e-21 Score=172.06 Aligned_cols=236 Identities=13% Similarity=0.093 Sum_probs=180.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEeC-------CCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEE-EeCCC
Q 012799 149 HKNWVLCIAWSADGKHLVSGSK-------AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS-ASKDG 220 (456)
Q Consensus 149 ~~~~v~~~~~~~~~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~-~~~dg 220 (456)
....+..++|+|+++++++++. ++.|.+||..+++...... ....+..++|+| +++.+++ ...++
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~-----dg~~l~v~~~~~~ 111 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--NDLKPFGATINN-----TTQTLWFGNTVNS 111 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--ESSCCCSEEEET-----TTTEEEEEETTTT
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--cCCCcceEEECC-----CCCEEEEEecCCC
Confidence 4456889999999999888774 5689999999887654322 234467888888 8885554 45579
Q ss_pred cEEEEECCCCeEEEEecCcCc---------cEEEEEeCCCC-eEEEEe--CCCcEEEEECCCCeEEEEeecCCcceEEEE
Q 012799 221 DARIWDVSLRKCVICLSGHTL---------AVTCVKWGGDG-VIYTGS--QDCTIKVWETTQGKLIRELKGHGHWVNSLA 288 (456)
Q Consensus 221 ~i~iwd~~~~~~~~~~~~~~~---------~v~~~~~~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 288 (456)
.|.+||..+++.+..+..+.. .+.+++|+|++ .+++++ .++.|.+||..+++.+..+..+...+..++
T Consensus 112 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 191 (353)
T 3vgz_A 112 AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLA 191 (353)
T ss_dssp EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCE
T ss_pred EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEE
Confidence 999999999998877765432 27889999998 566655 478899999999999888875666678888
Q ss_pred ecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccc---cccccEeE
Q 012799 289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT---GHQQLVNH 365 (456)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~ 365 (456)
++|+ ++++++++.++.|.+||+.+......... ++...+..
T Consensus 192 ~s~d------------------------------------g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 235 (353)
T 3vgz_A 192 LDSE------------------------------------GKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFIN 235 (353)
T ss_dssp EETT------------------------------------TTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEE
T ss_pred ECCC------------------------------------CCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccce
Confidence 8887 56688888999999999776543222111 34556888
Q ss_pred EEECCCCCEEEEEEC-CCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeE
Q 012799 366 VYFSPDGQWVASASF-DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL 444 (456)
Q Consensus 366 ~~~sp~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 444 (456)
++|+|+|+++++++. ++.|.+||..+++.+..+..... ..+ +|+|+|+++
T Consensus 236 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~---------------------------~~s~dg~~l 286 (353)
T 3vgz_A 236 ISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAV---------------------------LFNPARNEA 286 (353)
T ss_dssp EEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCE---------------------------EEETTTTEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceE---------------------------EECCCCCEE
Confidence 999999998776665 48999999999998877764332 334 889999966
Q ss_pred EEee-CCCceEEC
Q 012799 445 LSGS-KDSTLKVT 456 (456)
Q Consensus 445 ~s~s-~Dg~v~iW 456 (456)
+.++ .++.|.+|
T Consensus 287 ~v~~~~~~~v~~~ 299 (353)
T 3vgz_A 287 YVTHRQAGKVSVI 299 (353)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEEECCCCeEEEE
Confidence 5555 68999886
No 157
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.88 E-value=1.1e-21 Score=190.25 Aligned_cols=236 Identities=11% Similarity=0.103 Sum_probs=170.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCCCccccccCcc-cceEEEEecccccCCCCCEEEEEeC---CCcEEE
Q 012799 150 KNWVLCIAWSADGKHLVSGSK-AGELQCWDPQTGKPSGNPLSGHK-KWITGISWEPVHLNAPCRRFVSASK---DGDARI 224 (456)
Q Consensus 150 ~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~l~~~~~---dg~i~i 224 (456)
..+|.+++|+|||+.||+++. ||+++||++.+++... +..+. ..+..+.|+| + +.+++++. +....+
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~--lt~~~~~~~~~~~~sp-----d-~~l~~~~~~~g~~~~~l 92 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK--LNREPINSVLDPHYGV-----G-RVILVRDVSKGAEQHAL 92 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE--CCSSCCSEECEECTTC-----S-EEEEEEECSTTSCCEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe--eecccccccccccCCC-----C-eEEEEeccCCCCcceEE
Confidence 567999999999999999887 9999999986665432 33444 6899999998 6 66776664 455566
Q ss_pred EECCC---CeEEEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeecc
Q 012799 225 WDVSL---RKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299 (456)
Q Consensus 225 wd~~~---~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 299 (456)
|.+.. +... .+.... .+...+|+|++ .+++.+.++.+.+||+.+++.......+. .+++++|+
T Consensus 93 ~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spD------- 160 (582)
T 3o4h_A 93 FKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIR------- 160 (582)
T ss_dssp EEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEE-------
T ss_pred EEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCC-------
Confidence 55432 2222 333222 23345666655 55555566666699999987665554333 78889998
Q ss_pred ccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC----CcEEEEecCCCCCCccccccccccEeEEEECCCCCEE
Q 012799 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD----FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV 375 (456)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 375 (456)
++++++++.+ +.|++||+..+.. ..+..|...+..++|||||++|
T Consensus 161 -----------------------------G~~la~~~~~~~~~~~i~~~d~~~g~~--~~l~~~~~~~~~~~~SpDG~~l 209 (582)
T 3o4h_A 161 -----------------------------GDLIAGLGFFGGGRVSLFTSNLSSGGL--RVFDSGEGSFSSASISPGMKVT 209 (582)
T ss_dssp -----------------------------TTEEEEEEEEETTEEEEEEEETTTCCC--EEECCSSCEEEEEEECTTSCEE
T ss_pred -----------------------------CCEEEEEEEcCCCCeEEEEEcCCCCCc--eEeecCCCccccceECCCCCEE
Confidence 6668877776 7899999776543 3567788889999999999999
Q ss_pred EEEECCC--cEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCce
Q 012799 376 ASASFDK--SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL 453 (456)
Q Consensus 376 ~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v 453 (456)
+++..+| .|++||+.+++.. .+.+|...+..+. .......+|+|||.++++++.||++
T Consensus 210 ~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~-------------------~~~~~~~~~spdg~~~~~~~~~g~~ 269 (582)
T 3o4h_A 210 AGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYR-------------------PTAITWLGYLPDGRLAVVARREGRS 269 (582)
T ss_dssp EEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHC-------------------CSEEEEEEECTTSCEEEEEEETTEE
T ss_pred EEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhh-------------------hccccceeEcCCCcEEEEEEcCCcE
Confidence 9888898 8999999998887 7777766555540 0000000399999999999999999
Q ss_pred EEC
Q 012799 454 KVT 456 (456)
Q Consensus 454 ~iW 456 (456)
+||
T Consensus 270 ~l~ 272 (582)
T 3o4h_A 270 AVF 272 (582)
T ss_dssp EEE
T ss_pred EEE
Confidence 998
No 158
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=1.3e-20 Score=174.75 Aligned_cols=212 Identities=17% Similarity=0.110 Sum_probs=160.9
Q ss_pred CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC--------cc------ccccCcccc
Q 012799 130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP--------SG------NPLSGHKKW 195 (456)
Q Consensus 130 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--------~~------~~~~~~~~~ 195 (456)
+.+++|+.... .....+..+++++++.++++++.++ +++|+...... .. .....+...
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 46888864311 1234678999999999999999887 88886432100 00 011234567
Q ss_pred eEEEEecccccCCCCCEEE----EEeCCCcEEEEECCCC--------e---EEEEecCcCccEEEEEeCCC-C-eEEEEe
Q 012799 196 ITGISWEPVHLNAPCRRFV----SASKDGDARIWDVSLR--------K---CVICLSGHTLAVTCVKWGGD-G-VIYTGS 258 (456)
Q Consensus 196 v~~~~~~~~~~~~~~~~l~----~~~~dg~i~iwd~~~~--------~---~~~~~~~~~~~v~~~~~~~~-~-~l~~~~ 258 (456)
|.+++|+| ++++|+ +++.|+.|++||+.++ + .+..+.+|...|.+++|+|+ + .|++++
T Consensus 95 v~~l~~sp-----dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 95 IHHLALSC-----DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp EEEEEECT-----TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred ccEEEEcC-----CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 99999999 889999 7888999999998654 1 24556779999999999997 5 899999
Q ss_pred CCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC
Q 012799 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (456)
Q Consensus 259 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 338 (456)
.||+|++||++++........|...+.+++|+|+ +.+|++|+.|
T Consensus 170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspd------------------------------------g~~lasgs~d 213 (434)
T 2oit_A 170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPK------------------------------------GKQLAVGKQN 213 (434)
T ss_dssp TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTT------------------------------------SSCEEEEETT
T ss_pred CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCC------------------------------------CCEEEEEcCC
Confidence 9999999999999777777778899999999998 5669999999
Q ss_pred CcEEEEecCCCCCCccccc-------cccccEeEEEECCCCCEEEE-EECCCc------EEEEeCCCC
Q 012799 339 FTMFLWEPAVSKQPKTRMT-------GHQQLVNHVYFSPDGQWVAS-ASFDKS------IKLWNGTTG 392 (456)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~s-~~~dg~------i~iwd~~~~ 392 (456)
|.|++||++ .. ....+. .|...|.+++|++++.++++ ++.||. +++|++...
T Consensus 214 g~v~iwd~~-~~-~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 214 GTVVQYLPT-LQ-EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp SCEEEECTT-CC-EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CcEEEEccC-Cc-ccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 999999977 22 222222 23448999999999888754 445543 899998764
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.87 E-value=7.4e-20 Score=166.59 Aligned_cols=264 Identities=9% Similarity=0.071 Sum_probs=173.2
Q ss_pred eEEEEECC--CcEEEEeC--CCCcceeE--Ee-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCCCccccccCcc
Q 012799 122 QLASGSGD--TTVRLWDL--NTQTPMFK--CT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ-TGKPSGNPLSGHK 193 (456)
Q Consensus 122 ~l~~~~~d--~~v~vwd~--~~~~~~~~--~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~ 193 (456)
.++.|+.. +.|.+|++ .+++.... .. .....+..++|+|++++|++++.+ .|.+|++. +++... ...+.
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~--~~~~~ 80 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH--EASHP 80 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE--EEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE--eeEee
Confidence 35556543 46877765 34443211 11 234568899999999999999888 99999997 665432 11111
Q ss_pred --cceEEEEecccccCCCCCE--EEEEe-------------CCCcEEEEECC-CCeEEEEec----CcCccEEEEEeCCC
Q 012799 194 --KWITGISWEPVHLNAPCRR--FVSAS-------------KDGDARIWDVS-LRKCVICLS----GHTLAVTCVKWGGD 251 (456)
Q Consensus 194 --~~v~~~~~~~~~~~~~~~~--l~~~~-------------~dg~i~iwd~~-~~~~~~~~~----~~~~~v~~~~~~~~ 251 (456)
+....++|+| +|+. ++++. .+|.+.+|++. .++....+. .+...+.+++|+|+
T Consensus 81 ~~g~~~~~~~sp-----dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spd 155 (365)
T 1jof_A 81 IGGHPRANDADT-----NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPT 155 (365)
T ss_dssp CCSSGGGGCTTS-----CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTT
T ss_pred cCCCCccEEECC-----CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCC
Confidence 2234466666 8884 44553 68999999997 455443332 24567899999999
Q ss_pred C-eEEEEeC-CCcEEEEECC-CCeEE--EEee--cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhc
Q 012799 252 G-VIYTGSQ-DCTIKVWETT-QGKLI--RELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324 (456)
Q Consensus 252 ~-~l~~~~~-dg~i~iwd~~-~~~~~--~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (456)
| .++++.. ++.|++||+. +++.. ..+. .+...+..++|+|+
T Consensus 156 G~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spd-------------------------------- 203 (365)
T 1jof_A 156 ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPT-------------------------------- 203 (365)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTT--------------------------------
T ss_pred CCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCC--------------------------------
Confidence 9 6666654 6799999998 67643 3333 23566888999998
Q ss_pred cCCCCCEEEEEeC-CCcEEEEecCCC-CCC------ccccc----cccc------cEeEEE-ECCCCCEEEEEECCC---
Q 012799 325 KGNAPERLVSGSD-DFTMFLWEPAVS-KQP------KTRMT----GHQQ------LVNHVY-FSPDGQWVASASFDK--- 382 (456)
Q Consensus 325 ~~~~~~~l~~~~~-dg~i~iwd~~~~-~~~------~~~~~----~~~~------~v~~~~-~sp~~~~l~s~~~dg--- 382 (456)
++++++++. ++.+.+|++... ... ...+. +|.. .+..++ |+|||++|++++.+.
T Consensus 204 ----g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~ 279 (365)
T 1jof_A 204 ----GNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFE 279 (365)
T ss_dssp ----SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTT
T ss_pred ----CCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCC
Confidence 555766664 789999986532 111 11111 2222 588999 999999987765432
Q ss_pred ---cEEEEeCC-CCeEEEE---EecccccEEEEEeeeeeeecCCCCceeeecccccccceeEec---CCCeEEEeeCC-C
Q 012799 383 ---SIKLWNGT-TGKFVAV---FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA---DSRLLLSGSKD-S 451 (456)
Q Consensus 383 ---~i~iwd~~-~~~~~~~---~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---dg~~l~s~s~D-g 451 (456)
.|.+|++. ++++... ...+......+ +|+| ||++|++++.+ +
T Consensus 280 ~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~---------------------------a~sp~~~dg~~l~v~~~~~~ 332 (365)
T 1jof_A 280 LQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSN---------------------------AVSPCPWSDEWMAITDDQEG 332 (365)
T ss_dssp SCCEEEEEEECTTSCEEEEEEEEECSSCCTTCC---------------------------CEEECTTCTTEEEEECSSSC
T ss_pred CCCeEEEEEECCCCCEEEeeeeeecCCCCcccc---------------------------eecCCCcCCCEEEEEEcCCC
Confidence 89999986 5665432 22232223334 8899 89999998864 8
Q ss_pred ceEEC
Q 012799 452 TLKVT 456 (456)
Q Consensus 452 ~v~iW 456 (456)
.|+||
T Consensus 333 ~v~v~ 337 (365)
T 1jof_A 333 WLEIY 337 (365)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 99887
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=6.2e-21 Score=189.86 Aligned_cols=234 Identities=12% Similarity=0.147 Sum_probs=166.0
Q ss_pred cEEEEEECCCCCeEEEEEC---------CCcEEEEeCCCCcce--eEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 012799 110 AVLSVAFSPDGRQLASGSG---------DTTVRLWDLNTQTPM--FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~~~~~---------d~~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 178 (456)
.|.+++|||||++||+++. ++.|++||+.+++.+ ..+ ...+..++|+|||+.|+.+. ++.|++|+
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~ 136 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQ 136 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEES
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEe
Confidence 4899999999999998876 689999999988752 222 35688999999999999986 78999999
Q ss_pred CCCCCCccccccCcccce-----------------EEEEecccccCCCCCEEEEEeCCC---------------------
Q 012799 179 PQTGKPSGNPLSGHKKWI-----------------TGISWEPVHLNAPCRRFVSASKDG--------------------- 220 (456)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~~~~~~l~~~~~dg--------------------- 220 (456)
+.+++.......++...+ .+++|+| ||+.|++++.|.
T Consensus 137 ~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-----DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~ 211 (719)
T 1z68_A 137 RPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-----NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTIN 211 (719)
T ss_dssp STTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-----TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEE
T ss_pred CCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-----CCCEEEEEEECCCCCceEEeeccCCCCCcccee
Confidence 988876542223333322 4799999 999999988652
Q ss_pred -------------cEEEEECCCCeEE---E-----EecCcCccEEEEEeCCCC-eEEEEeCC----CcEEEEE----CCC
Q 012799 221 -------------DARIWDVSLRKCV---I-----CLSGHTLAVTCVKWGGDG-VIYTGSQD----CTIKVWE----TTQ 270 (456)
Q Consensus 221 -------------~i~iwd~~~~~~~---~-----~~~~~~~~v~~~~~~~~~-~l~~~~~d----g~i~iwd----~~~ 270 (456)
.|++||+.+++.. . .+.+|...+..++|+|++ .+++.... ..|.+|| +.+
T Consensus 212 ~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 291 (719)
T 1z68_A 212 IPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT 291 (719)
T ss_dssp EECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS
T ss_pred ecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC
Confidence 7889999887642 1 123577889999999999 44443322 2488899 877
Q ss_pred CeEEEEe----ecCCcceE-----EEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEE--EEeCCC
Q 012799 271 GKLIREL----KGHGHWVN-----SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV--SGSDDF 339 (456)
Q Consensus 271 ~~~~~~~----~~~~~~i~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~dg 339 (456)
++....+ ..+...+. .+.|+|+ ++.++ ++..+|
T Consensus 292 g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd------------------------------------g~~l~~~~~~~~g 335 (719)
T 1z68_A 292 WDCPKTQEHIEESRTGWAGGFFVSTPVFSYD------------------------------------AISYYKIFSDKDG 335 (719)
T ss_dssp EECCGGGEEEEECSSSCSSSSSCCCCEECTT------------------------------------SSCEEEEEECTTS
T ss_pred CceEEEEecccccCCceEccccCCccEECCC------------------------------------CCeEEEEEEccCC
Confidence 7665444 35555565 6778887 33233 344555
Q ss_pred --cEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECC-----CcEEEEeCCC
Q 012799 340 --TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD-----KSIKLWNGTT 391 (456)
Q Consensus 340 --~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d-----g~i~iwd~~~ 391 (456)
.|.+||+..+. ...+..+...+..+.++ +++.|+..+.+ +..++|.+..
T Consensus 336 ~~~l~~~~~~~~~--~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 336 YKHIHYIKDTVEN--AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp CEEEEEESSCSTT--CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred ceEEEEEECCCCc--eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 56677765443 33455556667777777 88877766655 7888887653
No 161
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.86 E-value=1.2e-19 Score=165.04 Aligned_cols=266 Identities=13% Similarity=0.110 Sum_probs=173.4
Q ss_pred CCeEEEEE----CCCcEEEEeCC--CCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC----CeEEEEeCCC--CCCcc-
Q 012799 120 GRQLASGS----GDTTVRLWDLN--TQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA----GELQCWDPQT--GKPSG- 186 (456)
Q Consensus 120 ~~~l~~~~----~d~~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~vwd~~~--~~~~~- 186 (456)
..+++.|+ .++.|.+|+++ +++.......+...+..++|+|++++|++++.+ +.|.+|++.. ++...
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 34556664 35679998764 454333222267778889999999999999886 7999998865 33211
Q ss_pred ccccCcccceEEEEecccccCCCCCEEEEEe-CCCcEEEEECCCCeEEE------EecC--------cCccEEEEEeCCC
Q 012799 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVI------CLSG--------HTLAVTCVKWGGD 251 (456)
Q Consensus 187 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~------~~~~--------~~~~v~~~~~~~~ 251 (456)
.....+......+++ +++++++++ .++.|.+|++.....+. ...+ +...+.+++|+|+
T Consensus 93 ~~~~~~~~~p~~~~~-------dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spd 165 (361)
T 3scy_A 93 NTQKTMGADPCYLTT-------NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPD 165 (361)
T ss_dssp EEEECSSSCEEEEEE-------CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTT
T ss_pred eEeccCCCCcEEEEE-------CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCC
Confidence 011223344555555 456666665 58899999997543221 1111 1234688999999
Q ss_pred C-eEEEEe-CCCcEEEEECCCCe-------E------EEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHH
Q 012799 252 G-VIYTGS-QDCTIKVWETTQGK-------L------IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316 (456)
Q Consensus 252 ~-~l~~~~-~dg~i~iwd~~~~~-------~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (456)
| .+++++ .++.|.+|++.... . .............++|+|+
T Consensus 166 g~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spd------------------------ 221 (361)
T 3scy_A 166 GKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSD------------------------ 221 (361)
T ss_dssp SSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTT------------------------
T ss_pred CCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCC------------------------
Confidence 9 565555 47899999887533 1 1112234455778999998
Q ss_pred HHhhhhhccCCCCCEEEEEe-CCCcEEEEecCCCCCC-c---cccccccccEeEEEECCCCCEEEEEECC--CcEEEEeC
Q 012799 317 ALERYNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQP-K---TRMTGHQQLVNHVYFSPDGQWVASASFD--KSIKLWNG 389 (456)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~-~---~~~~~~~~~v~~~~~sp~~~~l~s~~~d--g~i~iwd~ 389 (456)
++++++++ .++.|.+||+..+... . .....+...+..++|+|||++|+++..+ +.|.+|++
T Consensus 222 ------------g~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~ 289 (361)
T 3scy_A 222 ------------GKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKV 289 (361)
T ss_dssp ------------SSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEE
T ss_pred ------------CCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEE
Confidence 45566665 6899999998743211 1 1122333456899999999998776654 89999998
Q ss_pred C--CCe--EEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEee-CCCceEEC
Q 012799 390 T--TGK--FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-KDSTLKVT 456 (456)
Q Consensus 390 ~--~~~--~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s-~Dg~v~iW 456 (456)
. +++ .+..+.. ...+..+ +|+|||++|++++ .++.|.+|
T Consensus 290 ~~~~g~~~~~~~~~~-g~~~~~~---------------------------~~spdg~~l~~~~~~~~~v~v~ 333 (361)
T 3scy_A 290 DETNGTLTKVGYQLT-GIHPRNF---------------------------IITPNGKYLLVACRDTNVIQIF 333 (361)
T ss_dssp CTTTCCEEEEEEEEC-SSCCCEE---------------------------EECTTSCEEEEEETTTTEEEEE
T ss_pred cCCCCcEEEeeEecC-CCCCceE---------------------------EECCCCCEEEEEECCCCCEEEE
Confidence 5 454 3434443 3345556 8999999988887 67888885
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.86 E-value=8.8e-20 Score=181.64 Aligned_cols=252 Identities=11% Similarity=0.056 Sum_probs=176.8
Q ss_pred cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCC-----EEEEEEcCCCCEEEEEeCC---------CeEE
Q 012799 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW-----VLCIAWSADGKHLVSGSKA---------GELQ 175 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~s~~~d---------g~i~ 175 (456)
...+++|+|||++++++ |++|++||+.+++....+.+|... ...++|||||++|+.++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 35579999999998886 899999999999887777776543 2348899999999998876 5677
Q ss_pred EEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCcCccE-----------
Q 012799 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-SGHTLAV----------- 243 (456)
Q Consensus 176 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v----------- 243 (456)
+||+.+++.. .+..+...+..++|+| +|+.|+.+. ++.|++||+.+++..... .++...+
T Consensus 96 ~~d~~~~~~~--~l~~~~~~~~~~~~SP-----dG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e 167 (740)
T 4a5s_A 96 IYDLNKRQLI--TEERIPNNTQWVTWSP-----VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE 167 (740)
T ss_dssp EEETTTTEEC--CSSCCCTTEEEEEECS-----STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred EEECCCCcEE--EcccCCCcceeeEECC-----CCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccc
Confidence 9999998765 3566778899999999 999998885 689999999887754422 2232222
Q ss_pred ------EEEEeCCCC-eEEEEeCCC------------------------------------cEEEEECCC---Ce--EEE
Q 012799 244 ------TCVKWGGDG-VIYTGSQDC------------------------------------TIKVWETTQ---GK--LIR 275 (456)
Q Consensus 244 ------~~~~~~~~~-~l~~~~~dg------------------------------------~i~iwd~~~---~~--~~~ 275 (456)
..+.|+||| .|+.++.|. .|++||+.+ ++ ...
T Consensus 168 e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~ 247 (740)
T 4a5s_A 168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI 247 (740)
T ss_dssp HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE
T ss_pred hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE
Confidence 348999999 676654321 478889888 62 222
Q ss_pred Eee------cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe----CCCcEEEEe
Q 012799 276 ELK------GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS----DDFTMFLWE 345 (456)
Q Consensus 276 ~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~iwd 345 (456)
.+. ++...+..++|+|++. .++... .+..|++||
T Consensus 248 ~l~~~~~~~~~~~~~~~~~wspdg~------------------------------------~~~~~~~r~~~~~~i~~~d 291 (740)
T 4a5s_A 248 QITAPASMLIGDHYLCDVTWATQER------------------------------------ISLQWLRRIQNYSVMDICD 291 (740)
T ss_dssp EECCCHHHHTSCEEEEEEEEEETTE------------------------------------EEEEEEESSTTEEEEEEEE
T ss_pred EecCCccCCCCCeEEEEEEEeCCCe------------------------------------EEEEEeCCCCCEEEEEEEE
Confidence 332 2667788899999854 244332 234799999
Q ss_pred cCCCC----CC-cccc--ccccccEe-----EEEECCCCCEEE-EEEC-CC--cEEEEeCCCCeEEEEEecccccEEEE
Q 012799 346 PAVSK----QP-KTRM--TGHQQLVN-----HVYFSPDGQWVA-SASF-DK--SIKLWNGTTGKFVAVFRGHVGPVYQI 408 (456)
Q Consensus 346 ~~~~~----~~-~~~~--~~~~~~v~-----~~~~sp~~~~l~-s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~i 408 (456)
+.++. .. ...+ ..|...+. .++|+|||+.|+ ..+. +| .|++||..+++...... ....+..+
T Consensus 292 ~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~-g~~~v~~~ 369 (740)
T 4a5s_A 292 YDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITK-GTWEVIGI 369 (740)
T ss_dssp EETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCC-SSSCEEEE
T ss_pred CCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEeccc-CCEEEEEE
Confidence 87765 11 1212 34555554 789999999877 6653 33 68888987766544333 34445444
No 163
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.85 E-value=1.7e-20 Score=173.04 Aligned_cols=286 Identities=12% Similarity=0.004 Sum_probs=177.7
Q ss_pred EEEEEECCCCCeEEEEECC---CcEEEEeCCCCcceeEEecCCCCE-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 012799 111 VLSVAFSPDGRQLASGSGD---TTVRLWDLNTQTPMFKCTGHKNWV-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (456)
Q Consensus 111 V~~~~~s~~~~~l~~~~~d---~~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 186 (456)
+.+++|+|||++|+..... ..|.+||+.+++.... ..+.... ..+.|+|||++|+.++.++.|.+||+.+++...
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l-~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~ 116 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL-TEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV 116 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC-CCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe-ecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence 7788999999998877643 3688899988765443 3333333 347899999999999999999999998876432
Q ss_pred ccccCcccceEE---EEecc-----------cccCCCCCEEEEE-----eCCCcEEEEECCCCeEEEEecCcCccEEEEE
Q 012799 187 NPLSGHKKWITG---ISWEP-----------VHLNAPCRRFVSA-----SKDGDARIWDVSLRKCVICLSGHTLAVTCVK 247 (456)
Q Consensus 187 ~~~~~~~~~v~~---~~~~~-----------~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 247 (456)
....+...... +.|.. ..++++++.++.+ ..+..|++||+.+++..... .+...+..+.
T Consensus 117 -~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~ 194 (396)
T 3c5m_A 117 -IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPI 194 (396)
T ss_dssp -EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEE
T ss_pred -EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccce
Confidence 22222222211 22210 1223366666544 35678999999888765444 4667789999
Q ss_pred eCC-CC-eEEEEeCC------CcEEEEECCCCeEEEEeecC-CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHH
Q 012799 248 WGG-DG-VIYTGSQD------CTIKVWETTQGKLIRELKGH-GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (456)
Q Consensus 248 ~~~-~~-~l~~~~~d------g~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (456)
|+| ++ .++..+.+ ..|.+||+..++........ ...+..+.|+|+
T Consensus 195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spd-------------------------- 248 (396)
T 3c5m_A 195 YRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPD-------------------------- 248 (396)
T ss_dssp EETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTT--------------------------
T ss_pred ECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCC--------------------------
Confidence 999 67 56555543 46889998766543333321 335778899988
Q ss_pred hhhhhccCCCCCEEEEEeCC-----CcEEEEecCCCCCCccccccccccEeEEEECC-CCCEEEEEE-------------
Q 012799 319 ERYNKIKGNAPERLVSGSDD-----FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASAS------------- 379 (456)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~------------- 379 (456)
+++|+.++.+ +.|++||+..+.... +..... .. +.|+| +|+++++++
T Consensus 249 ----------g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~--l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~ 314 (396)
T 3c5m_A 249 ----------GSAMAYVSYFKGQTDRVIYKANPETLENEE--VMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSY 314 (396)
T ss_dssp ----------SSCEEEEEEETTTCCEEEEEECTTTCCEEE--EEECCS-EE-EEEECSSSSEEEEEECCC----------
T ss_pred ----------CCEEEEEecCCCCccceEEEEECCCCCeEE--eeeCCC-CC-CCccCCCCceEEEecCCcceeecccccc
Confidence 4445555433 449999976554221 111111 23 88999 999988765
Q ss_pred ---CCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC-CCceEE
Q 012799 380 ---FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DSTLKV 455 (456)
Q Consensus 380 ---~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~-Dg~v~i 455 (456)
.++.|++||+.+++.. .+..+...+... ..+.......++|+|||+.|+.++. ++...|
T Consensus 315 ~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~----------------~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l 377 (396)
T 3c5m_A 315 NIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVL----------------DGDRQITHPHPSFTPNDDGVLFTSDFEGVPAI 377 (396)
T ss_dssp CCCCCCEEEEEETTTTBCC-EEEECCCCCCCB----------------TTBSSTTCCCCEECTTSSEEEEEECTTSSCEE
T ss_pred ccCCCCcEEEEecccCceE-EccCCCCccccc----------------cccccCCCCCceEccCCCeEEEEecCCCCceE
Confidence 3478999999887653 333333210000 0000000112289999998887764 565555
Q ss_pred C
Q 012799 456 T 456 (456)
Q Consensus 456 W 456 (456)
|
T Consensus 378 ~ 378 (396)
T 3c5m_A 378 Y 378 (396)
T ss_dssp E
T ss_pred E
Confidence 4
No 164
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.84 E-value=5.8e-19 Score=174.02 Aligned_cols=263 Identities=13% Similarity=0.014 Sum_probs=188.8
Q ss_pred cccccccCCcccEEEEEECCCCCeEEEE--ECCCcEEEEeCCCCcceeEEecCCCCEE---------EEEEc--CCCCE-
Q 012799 99 RCSATIAGHTEAVLSVAFSPDGRQLASG--SGDTTVRLWDLNTQTPMFKCTGHKNWVL---------CIAWS--ADGKH- 164 (456)
Q Consensus 99 ~~~~~l~~h~~~V~~~~~s~~~~~l~~~--~~d~~v~vwd~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~- 164 (456)
-....+.+|...|..++|++++-+++.. +.++...||....+.....+..+...+. ...|+ |||+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~ 93 (662)
T 3azo_A 14 IDAALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL 93 (662)
T ss_dssp CCHHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred CCHHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeE
Confidence 3456678899999999999887677776 4578899999655555667777766666 66666 99998
Q ss_pred EEEEeC-CCeEEEEeCC--C-CCCccccccC-----cccceEEEEecccccCCCCCEEEEEeCC----------CcEEEE
Q 012799 165 LVSGSK-AGELQCWDPQ--T-GKPSGNPLSG-----HKKWITGISWEPVHLNAPCRRFVSASKD----------GDARIW 225 (456)
Q Consensus 165 l~s~~~-dg~i~vwd~~--~-~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~l~~~~~d----------g~i~iw 225 (456)
|+.++. +..|.++++. . +... .+.. |...+..++|+| +|+.|++++.+ ..|++|
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~~~--~l~~~~~~~~~~~~~~~~~sp-----Dg~~l~~~~~~~~~~~~~~~~~~i~~~ 166 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAVPR--PLTPVSAVGGGLRWADPVLLP-----ERGEVWCMAEEFTGEGPSDVRRFLAAV 166 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCCCE--ECSCCCCSTTCEEEEEEEEET-----TTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred EEEEECCCCeEEEEcCCCCCCCCCE--eccCCccCCCCccccCcEECC-----CCCEEEEEEecccCCCCCCceeEEEEE
Confidence 776654 5667777776 3 4432 2333 567788999999 99999998877 589999
Q ss_pred ECCC------CeEEEEec-CcCccEEEEEeCCCC-eEEEEeCC--------CcEEEEECC-CC---eEEEEeecCCcceE
Q 012799 226 DVSL------RKCVICLS-GHTLAVTCVKWGGDG-VIYTGSQD--------CTIKVWETT-QG---KLIRELKGHGHWVN 285 (456)
Q Consensus 226 d~~~------~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~~d--------g~i~iwd~~-~~---~~~~~~~~~~~~i~ 285 (456)
|+.+ ++. ..+. .+...+..++|+||| .|+.++.+ ..|++||+. ++ +.......+...+.
T Consensus 167 ~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~ 245 (662)
T 3azo_A 167 PLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIA 245 (662)
T ss_dssp ETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEE
T ss_pred ECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEc
Confidence 9987 554 4455 556778889999999 67766644 379999998 56 44444444567889
Q ss_pred EEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC--cEEEEecCCCCCCcccccccccc-
Q 012799 286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF--TMFLWEPAVSKQPKTRMTGHQQL- 362 (456)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~- 362 (456)
.+.|+|+ +++++++..++ .|++||+..+. .......+...
T Consensus 246 ~~~~spd------------------------------------g~l~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~ 288 (662)
T 3azo_A 246 QAEWAPD------------------------------------GSLIVATDRTGWWNLHRVDPATGA-ATQLCRREEEFA 288 (662)
T ss_dssp EEEECTT------------------------------------SCEEEEECTTSSCEEEEECTTTCC-EEESSCCSSBSS
T ss_pred ceEECCC------------------------------------CeEEEEECCCCCeEEEEEECCCCc-eeeccccccccc
Confidence 9999998 44577777788 56666653332 22222222222
Q ss_pred -------EeEEEECCCCCEEEEEECCCcEEEE--eCCCCeEEEEEecccccEEEE
Q 012799 363 -------VNHVYFSPDGQWVASASFDKSIKLW--NGTTGKFVAVFRGHVGPVYQI 408 (456)
Q Consensus 363 -------v~~~~~sp~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~v~~i 408 (456)
+..++|+|+++++++++. +.++|| |..+++ +..+..|...+..+
T Consensus 289 ~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~ 341 (662)
T 3azo_A 289 GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAAT 341 (662)
T ss_dssp CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEE
T ss_pred CccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEE
Confidence 567899999999999998 999999 665565 56677776666554
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.83 E-value=8.6e-18 Score=147.53 Aligned_cols=240 Identities=13% Similarity=0.181 Sum_probs=173.8
Q ss_pred cCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe------cCCCCEEEEEEc-CCCCEEEEEeC-CCeEEE
Q 012799 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT------GHKNWVLCIAWS-ADGKHLVSGSK-AGELQC 176 (456)
Q Consensus 105 ~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~------~~~~~v~~~~~~-~~~~~l~s~~~-dg~i~v 176 (456)
.+|-..+.+++++++++++++...++.|.+||.+ ++.+..+. ++...+..+++. ++++++++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 4677889999999999988888889999999987 55555553 244678999994 67766666543 889999
Q ss_pred EeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec--CcCccEEEEEeCCCC-e
Q 012799 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--GHTLAVTCVKWGGDG-V 253 (456)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~ 253 (456)
|| .+++........+...+.++++.+ +++.+++...++.|.+||.. ++.+..+. .+...+..+++++++ .
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l 177 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDN-----KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEI 177 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECT-----TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEE
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeC-----CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCE
Confidence 99 455544322233445688999988 88888877788999999964 45555543 345578999999999 4
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEeecC--CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCE
Q 012799 254 IYTGSQDCTIKVWETTQGKLIRELKGH--GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331 (456)
Q Consensus 254 l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (456)
+++...++.|++||.. ++.+..+... ......++++++ +..
T Consensus 178 ~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~------------------------------------G~l 220 (286)
T 1q7f_A 178 FISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSN------------------------------------GEI 220 (286)
T ss_dssp EEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTT------------------------------------CCE
T ss_pred EEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCC------------------------------------CCE
Confidence 4555568899999974 5566666443 256788888887 455
Q ss_pred EEEEeCCC-cEEEEecCCCCCCcccccccc--ccEeEEEECCCCCEEEEEECCCcEEEEeCCCC
Q 012799 332 LVSGSDDF-TMFLWEPAVSKQPKTRMTGHQ--QLVNHVYFSPDGQWVASASFDKSIKLWNGTTG 392 (456)
Q Consensus 332 l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 392 (456)
+++...++ .|.+||.. +. ....+..+. ..+.+++++|+|+++++ +.|++|++|+....
T Consensus 221 ~v~~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 221 LIADNHNNFNLTIFTQD-GQ-LISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEECSSSCEEEEECTT-SC-EEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEEeCCCCEEEEEECCC-CC-EEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 77777775 99999943 32 333333322 34789999999987777 67999999998654
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.83 E-value=6.9e-19 Score=160.15 Aligned_cols=243 Identities=9% Similarity=0.057 Sum_probs=168.1
Q ss_pred CcccEEEEEECCCCCeEEEEECCCcEEEEeCC-CCcceeEEec-CCCCEEEEEEcCCCCE--EEEEe-------------
Q 012799 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN-TQTPMFKCTG-HKNWVLCIAWSADGKH--LVSGS------------- 169 (456)
Q Consensus 107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~--l~s~~------------- 169 (456)
+...+..++|+|+|++|++++.+ .|.+|++. +++....... ..+.+.+++|+|+|++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 34467889999999999999887 99999997 6665433221 1123567899999994 44553
Q ss_pred CCCeEEEEeCCC-CCCcccccc----CcccceEEEEecccccCCCCCEEEEEeC-CCcEEEEECC-CCeEE--EEec--C
Q 012799 170 KAGELQCWDPQT-GKPSGNPLS----GHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVS-LRKCV--ICLS--G 238 (456)
Q Consensus 170 ~dg~i~vwd~~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~-~~~~~--~~~~--~ 238 (456)
.+|.+.+|++.. ++... ... .+...+.+++|+| +|++++++.. ++.|++||+. +++.. ..+. .
T Consensus 117 ~~g~v~v~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~sp-----dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 190 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEK-NVQNYEYQENTGIHGMVFDP-----TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD 190 (365)
T ss_dssp SCCEEEEEEECTTCCEEE-EEEEEECCTTCCEEEEEECT-----TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS
T ss_pred CCceEEEEccCCCCcCcc-eEeeEEeCCCCcceEEEECC-----CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC
Confidence 689999999974 54322 111 2456788999999 9998887764 6799999998 66543 2332 2
Q ss_pred cCccEEEEEeCCCC-eEEEEeC-CCcEEEEECC--CCeEE---EEeec-------CCc------ceEEEE-ecCcceeee
Q 012799 239 HTLAVTCVKWGGDG-VIYTGSQ-DCTIKVWETT--QGKLI---RELKG-------HGH------WVNSLA-LSTEYALRT 297 (456)
Q Consensus 239 ~~~~v~~~~~~~~~-~l~~~~~-dg~i~iwd~~--~~~~~---~~~~~-------~~~------~i~~~~-~~~~~~~~~ 297 (456)
+...+..++|+|+| .+++++. ++.|.+|++. +++.. ..+.. +.. .+..++ ++|+
T Consensus 191 ~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spd----- 265 (365)
T 1jof_A 191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFS----- 265 (365)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTT-----
T ss_pred CCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCC-----
Confidence 35678999999999 6766664 7899999765 56542 22221 111 477888 9988
Q ss_pred ccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC-C-----cEEEEecCCCCCCcc---ccccccccEeEEEE
Q 012799 298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD-F-----TMFLWEPAVSKQPKT---RMTGHQQLVNHVYF 368 (456)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g-----~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~ 368 (456)
+++++++..+ . .|.+|++........ ....+...+..++|
T Consensus 266 -------------------------------G~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~ 314 (365)
T 1jof_A 266 -------------------------------GKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAV 314 (365)
T ss_dssp -------------------------------SSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCE
T ss_pred -------------------------------CCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCccccee
Confidence 4556655432 2 899999863333222 12234445678899
Q ss_pred CC---CCCEEEEEECC-CcEEEEeCCCC
Q 012799 369 SP---DGQWVASASFD-KSIKLWNGTTG 392 (456)
Q Consensus 369 sp---~~~~l~s~~~d-g~i~iwd~~~~ 392 (456)
+| ||++|++++.+ +.|.+|++...
T Consensus 315 sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 315 SPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred cCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 99 89999988764 89999998765
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.83 E-value=2.5e-18 Score=155.65 Aligned_cols=268 Identities=12% Similarity=0.001 Sum_probs=181.6
Q ss_pred CCCeEEEEE------CCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCC
Q 012799 119 DGRQLASGS------GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDPQTG 182 (456)
Q Consensus 119 ~~~~l~~~~------~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~dg~i~vwd~~~~ 182 (456)
+++++++.. .|+.|.+||..+++.+..+..+..+ .++|+||+++++++. .++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 555555543 3679999999999988888766555 899999999999886 3678999999887
Q ss_pred CCccccccC-----cccceEEEEecccccCCCCCEEEEEeC--CCcEEEEECCCCeEEEE-ecCcCccEEEEEeCCCC--
Q 012799 183 KPSGNPLSG-----HKKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGGDG-- 252 (456)
Q Consensus 183 ~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~-- 252 (456)
+........ +......++++| +|++++++.. ++.|.+||+.+++.+.. +... . ...+.+.|++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~sp-----dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~ 164 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTT-----DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPR 164 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECT-----TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSS
T ss_pred cEEEEEEcCccccccCCCcceEEECC-----CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCe
Confidence 765432211 223456788888 9999998864 58999999999998877 5422 2 2235567765
Q ss_pred eEEEEeCCCcEEEEECCC-CeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCE
Q 012799 253 VIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331 (456)
Q Consensus 253 ~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (456)
.+++.+.||.+.+|++.. ++....... . ..+.+..... .....+++..
T Consensus 165 ~~~~~~~dg~~~~v~~~~~g~~~~~~~~--~----~~~~~~~~~~-------------------------~~~~~~~g~~ 213 (361)
T 2oiz_A 165 SFMTICGDGGLLTINLGEDGKVASQSRS--K----QMFSVKDDPI-------------------------FIAPALDKDK 213 (361)
T ss_dssp EEEEEETTSSEEEEEECTTSSEEEEEEC--C----CCSCTTTSCB-------------------------CSCCEECSSE
T ss_pred eEEEECCCCcEEEEEECCCCcEeeeccc--c----ceEcCCCCce-------------------------EEEecccCCE
Confidence 788899999999999865 444322110 0 0011110000 0000012345
Q ss_pred EEEEeCCCcEEEEecCCCCCCccc-c---c---cc----cccEeEEEECCCCCEEEEEEC-----------CCcEEEEeC
Q 012799 332 LVSGSDDFTMFLWEPAVSKQPKTR-M---T---GH----QQLVNHVYFSPDGQWVASASF-----------DKSIKLWNG 389 (456)
Q Consensus 332 l~~~~~dg~i~iwd~~~~~~~~~~-~---~---~~----~~~v~~~~~sp~~~~l~s~~~-----------dg~i~iwd~ 389 (456)
++..+.++.+.++|+......... + . .+ ......++|+|+++.++++.. .+.|.+||+
T Consensus 214 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~ 293 (361)
T 2oiz_A 214 AHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDT 293 (361)
T ss_dssp EEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEET
T ss_pred EEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEEC
Confidence 666678899999997544321110 0 0 00 011123789999888776543 348999999
Q ss_pred CCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 390 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
.+++.+..+..+. ..++ +|+|||++|++++. ++|.||
T Consensus 294 ~t~~~v~~i~~~~--p~~i---------------------------a~spdg~~l~v~n~-~~v~v~ 330 (361)
T 2oiz_A 294 KTKQRVARIPGRD--ALSM---------------------------TIDQQRNLMLTLDG-GNVNVY 330 (361)
T ss_dssp TTTEEEEEEECTT--CCEE---------------------------EEETTTTEEEEECS-SCEEEE
T ss_pred CCCcEEEEEecCC--eeEE---------------------------EECCCCCEEEEeCC-CeEEEE
Confidence 9999999998776 7888 89999999998887 999987
No 168
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.82 E-value=4.6e-18 Score=153.76 Aligned_cols=253 Identities=13% Similarity=0.134 Sum_probs=173.9
Q ss_pred ccEEEEEECCCCCeEEEEE---------CCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC---C--eE
Q 012799 109 EAVLSVAFSPDGRQLASGS---------GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---G--EL 174 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~---------~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g--~i 174 (456)
..+..+++ ||+++|... .++.|++||+.+++.. .+ ..+..++|+|||++|+.++.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 45677778 888887642 2567999999887643 33 568899999999999987754 3 38
Q ss_pred EEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC---------------------------CcEEEEEC
Q 012799 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD---------------------------GDARIWDV 227 (456)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d---------------------------g~i~iwd~ 227 (456)
.+|++.+++... +..+.. +..+.|+| +++.|+.++.+ ..|++||+
T Consensus 88 ~~~~~~~g~~~~--l~~~~~-~~~~~wsp-----dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 159 (347)
T 2gop_A 88 WVADLETLSSKK--ILEAKN-IRSLEWNE-----DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT 159 (347)
T ss_dssp EEEETTTTEEEE--EEEESE-EEEEEECT-----TSSEEEEEEECCCC---------CCCC---------CEEEEEEEET
T ss_pred EEEECCCCceEE--EEcCCC-ccceeECC-----CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence 888888776543 222334 89999999 89988887642 57999999
Q ss_pred CCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCC---------cEEEEECCCCeEEEEeecCCcceEEEEecCcceeeec
Q 012799 228 SLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDC---------TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG 298 (456)
Q Consensus 228 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 298 (456)
.+++.+..+.. . .+..+.|+|+|.++++..++ .|.++| +++. ..+..+ ..+..+ +|+
T Consensus 160 ~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~-~~~~~~--spd------ 225 (347)
T 2gop_A 160 ESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKE-EKMFEK-VSFYAV--DSD------ 225 (347)
T ss_dssp TTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEE-EEEEEE-ESEEEE--EEC------
T ss_pred CCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC--CCce-EEeccC-cceeeE--CCC------
Confidence 98887444544 3 78899999999444554432 355555 5543 333323 334433 665
Q ss_pred cccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC--------CcEEEEecCCCCCCccccccccccEeE-EEEC
Q 012799 299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD--------FTMFLWEPAVSKQPKTRMTGHQQLVNH-VYFS 369 (456)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~s 369 (456)
+++++.++.+ ..|.+|| ..........+...+.. +.|+
T Consensus 226 ------------------------------g~~l~~~~~~~~~~~~~~~~l~~~d---~~~~~~l~~~~~~~~~~~~~~s 272 (347)
T 2gop_A 226 ------------------------------GERILLYGKPEKKYMSEHNKLYIYD---GKEVMGILDEVDRGVGQAKIKD 272 (347)
T ss_dssp ------------------------------SSCEEEEECCSSSCCCSSCEEEEEC---SSCEEESSTTCCSEEEEEEEET
T ss_pred ------------------------------CCEEEEEEccccCCccccceEEEEC---CCceEeccccCCcccCCccEEc
Confidence 4456665543 4688887 33344444566777886 9999
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC
Q 012799 370 PDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449 (456)
Q Consensus 370 p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~ 449 (456)
++ ++++++.++.+++| +.+++.... ..+...|.++ +|+| .++++++.
T Consensus 273 -dg-~~~~~~~~~~~~l~-~~~g~~~~~-~~~~~~v~~~---------------------------~~s~--~~~~~~~~ 319 (347)
T 2gop_A 273 -GK-VYFTLFEEGSVNLY-IWDGEIKPI-AKGRHWIMGF---------------------------DVDE--IVVYLKET 319 (347)
T ss_dssp -TE-EEEEEEETTEEEEE-EESSSEEEE-ECSSSEEEEE---------------------------EESS--SEEEEEEC
T ss_pred -Cc-EEEEEecCCcEEEE-EcCCceEEE-ecCCCeEEee---------------------------eeeC--cEEEEEcC
Confidence 88 99999999999999 876665443 4456778888 8888 67777777
Q ss_pred CCce-EEC
Q 012799 450 DSTL-KVT 456 (456)
Q Consensus 450 Dg~v-~iW 456 (456)
++.. .||
T Consensus 320 ~~~~~~l~ 327 (347)
T 2gop_A 320 ATRLRELF 327 (347)
T ss_dssp SSSCCEEE
T ss_pred CCChHHhe
Confidence 7654 554
No 169
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.82 E-value=3.4e-18 Score=153.66 Aligned_cols=267 Identities=13% Similarity=0.093 Sum_probs=191.5
Q ss_pred ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 188 (456)
..|.+++|++++..++..+.++.++.| .++....+..+...+.+++|++++++++++..++.|.+||.++++... .
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~-~ 81 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR-P 81 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-E
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE-E
Confidence 456778899988877777788899999 355666777787888999999999988888889999999998876543 2
Q ss_pred ccCcccceEEEEecccccCCCCCEEEEEeCC----CcEEEEECCCCeEEEEec--CcCccEEEEEeCCCCeEEEEeC---
Q 012799 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKD----GDARIWDVSLRKCVICLS--GHTLAVTCVKWGGDGVIYTGSQ--- 259 (456)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~l~~~~~--- 259 (456)
...+...+.+++++| +++++++...+ +.|.+||..++.....+. .+...+.+++++|+|.++.++.
T Consensus 82 ~~~~~~~~~~i~~~~-----dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 156 (333)
T 2dg1_A 82 FVSHKANPAAIKIHK-----DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY 156 (333)
T ss_dssp EECSSSSEEEEEECT-----TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB
T ss_pred eeCCCCCcceEEECC-----CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecccc
Confidence 224556799999998 88877777666 689999998776553332 2446789999999995555554
Q ss_pred ----CCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE-EE
Q 012799 260 ----DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VS 334 (456)
Q Consensus 260 ----dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ 334 (456)
.+.|..+|..+++..... ........++++++ ++.+ ++
T Consensus 157 ~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~d------------------------------------g~~l~v~ 199 (333)
T 2dg1_A 157 STNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTD------------------------------------EKVLWVT 199 (333)
T ss_dssp TTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTT------------------------------------SSEEEEE
T ss_pred ccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCC------------------------------------CCEEEEE
Confidence 356777776655443322 22334677888887 4434 45
Q ss_pred EeCCCcEEEEecCCCCCCcc--------ccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccc---
Q 012799 335 GSDDFTMFLWEPAVSKQPKT--------RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG--- 403 (456)
Q Consensus 335 ~~~dg~i~iwd~~~~~~~~~--------~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--- 403 (456)
.+.++.|.+||+........ ...++ ..+..++++++|+++++...++.|.+||. +++.+..+..+..
T Consensus 200 ~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g 277 (333)
T 2dg1_A 200 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEG 277 (333)
T ss_dssp EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGT
T ss_pred eCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccc
Confidence 55678999999764322211 11122 46788999999998888888899999998 5777766654433
Q ss_pred ---cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCC
Q 012799 404 ---PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD 450 (456)
Q Consensus 404 ---~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~D 450 (456)
.+.++ +|+||++.|+.++.+
T Consensus 278 ~~~~~~~~---------------------------~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 278 HMLRSTHP---------------------------QFIPGTNQLIICSND 300 (333)
T ss_dssp CSCBCCEE---------------------------EECTTSCEEEEEEEC
T ss_pred cccCcceE---------------------------EECCCCCEEEEEeCc
Confidence 46666 889998777666555
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.82 E-value=1.5e-17 Score=148.83 Aligned_cols=247 Identities=15% Similarity=0.134 Sum_probs=180.9
Q ss_pred cccEEEEEECCCCCeEEEEECC------------------------CcEEEEeCCCCcceeEEe-cCCCCEEEEEEcCCC
Q 012799 108 TEAVLSVAFSPDGRQLASGSGD------------------------TTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADG 162 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d------------------------~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~ 162 (456)
-+.|.+++++|+|+++++...+ ++|.+||..+++.+..+. ++-..+..++++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 5679999999999999888777 479999998888776554 445678999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCC-Cccccc--------cCcccceEEEEecccccCCCCCEEEEEe-CCCcEEEEECCCCeE
Q 012799 163 KHLVSGSKAGELQCWDPQTGK-PSGNPL--------SGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKC 232 (456)
Q Consensus 163 ~~l~s~~~dg~i~vwd~~~~~-~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~ 232 (456)
+++++...++.|++|+..... .+...- ..+......++++|. ++..+++.+ .++.|++|| ..++.
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~----~g~lyv~d~~~~~~I~~~~-~~g~~ 177 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS----TGAVFVSDGYCNSRIVQFS-PSGKF 177 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT----TCCEEEEECSSCCEEEEEC-TTSCE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC----CCeEEEEeCCCCCeEEEEc-CCCCE
Confidence 988888889999999986542 222111 234446788999872 456666665 689999999 56666
Q ss_pred EEEecC----------cCccEEEEEeCCC-C-eEEEEeCCCcEEEEECCCCeEEEEee--cCCcceEEEEecCcceeeec
Q 012799 233 VICLSG----------HTLAVTCVKWGGD-G-VIYTGSQDCTIKVWETTQGKLIRELK--GHGHWVNSLALSTEYALRTG 298 (456)
Q Consensus 233 ~~~~~~----------~~~~v~~~~~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~ 298 (456)
+..+.. +-.....++++|+ + .+++...++.|++||..+++.+..+. .+...+..++++|...+..
T Consensus 178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~- 256 (329)
T 3fvz_A 178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAV- 256 (329)
T ss_dssp EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEE-
T ss_pred EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEe-
Confidence 666632 2234889999998 6 55556678899999999899888874 3456778888888321111
Q ss_pred cccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccc---ccccccEeEEEECCCCCEE
Q 012799 299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM---TGHQQLVNHVYFSPDGQWV 375 (456)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l 375 (456)
++..+++...+..|++||...+. ....+ .++...+..++++|+|.++
T Consensus 257 -----------------------------~g~~~v~~~~~~~v~~~~~~~g~-~~~~~~~~~~~~~~p~~ia~~~dG~ly 306 (329)
T 3fvz_A 257 -----------------------------NGKPYFGDQEPVQGFVMNFSSGE-IIDVFKPVRKHFDMPHDIVASEDGTVY 306 (329)
T ss_dssp -----------------------------ECCCCTTCSCCCCEEEEETTTCC-EEEEECCSSSCCSSEEEEEECTTSEEE
T ss_pred -----------------------------CCCEEeccCCCcEEEEEEcCCCe-EEEEEcCCCCccCCeeEEEECCCCCEE
Confidence 02223444556789999976654 33333 3566778999999999888
Q ss_pred EEEECCCcEEEEeCC
Q 012799 376 ASASFDKSIKLWNGT 390 (456)
Q Consensus 376 ~s~~~dg~i~iwd~~ 390 (456)
++...++.|++|++.
T Consensus 307 vad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 307 IGDAHTNTVWKFTLT 321 (329)
T ss_dssp EEESSSCCEEEEEEE
T ss_pred EEECCCCEEEEEeCC
Confidence 888889999999964
No 171
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.81 E-value=7.5e-18 Score=152.39 Aligned_cols=244 Identities=14% Similarity=0.049 Sum_probs=164.5
Q ss_pred cEEEEEECCCCCeEE-EEECCCcEEEEeCCCCcceeEEecCC------CCEEEEEEcCCCCEEEEEeCC-----------
Q 012799 110 AVLSVAFSPDGRQLA-SGSGDTTVRLWDLNTQTPMFKCTGHK------NWVLCIAWSADGKHLVSGSKA----------- 171 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~-~~~~d~~v~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~s~~~d----------- 171 (456)
.+..++|+|+|++++ ++..++.|.+||+.+++....+..+. ..+..++|+|+|++|++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 577899999998665 44568899999999988777665332 237889999999999998865
Q ss_pred -CeEEEEeCCCCCCcccc-ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCc--------
Q 012799 172 -GELQCWDPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL-------- 241 (456)
Q Consensus 172 -g~i~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------- 241 (456)
+.|.+||+.+++..... ...+...+.+++|+| +++ +++++. .|++||+.+++.+..+..+..
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-----dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 195 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD-----DGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAP 195 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT-----TSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCC
T ss_pred CCeEEEEECCCccccceeeeccCCCcccceeECC-----CCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCc
Confidence 89999999885533211 122334578888998 888 555543 499999999988777653320
Q ss_pred ----------------cEEEEEeCCCC-eE-EEEeCCCcEEEEECCCCeEE-EEeecCCcceEEEEecC-cceeeecccc
Q 012799 242 ----------------AVTCVKWGGDG-VI-YTGSQDCTIKVWETTQGKLI-RELKGHGHWVNSLALST-EYALRTGAFD 301 (456)
Q Consensus 242 ----------------~v~~~~~~~~~-~l-~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~~~-~~~~~~~~~~ 301 (456)
....+++.+++ .. ........+..+|..+++.. ..+......+..++++| +
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~d--------- 266 (349)
T 1jmx_B 196 DVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKD--------- 266 (349)
T ss_dssp BCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSC---------
T ss_pred cceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCC---------
Confidence 23445555433 00 00001111222455544321 12223455677888888 7
Q ss_pred CCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECC
Q 012799 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381 (456)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d 381 (456)
+++++++ ++.|.+||+.+.+. ...+. ....+.+++|+|+|++|++++.+
T Consensus 267 ---------------------------g~~l~~~--~~~v~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~ 315 (349)
T 1jmx_B 267 ---------------------------PNQIYGV--LNRLAKYDLKQRKL-IKAAN-LDHTYYCVAFDKKGDKLYLGGTF 315 (349)
T ss_dssp ---------------------------TTEEEEE--ESEEEEEETTTTEE-EEEEE-CSSCCCEEEECSSSSCEEEESBS
T ss_pred ---------------------------CCEEEEE--cCeEEEEECccCeE-EEEEc-CCCCccceEECCCCCEEEEecCC
Confidence 5557777 88999999776442 22222 23347789999999988888889
Q ss_pred CcEEEEeCCCCeEEEEEecc
Q 012799 382 KSIKLWNGTTGKFVAVFRGH 401 (456)
Q Consensus 382 g~i~iwd~~~~~~~~~~~~~ 401 (456)
+.|++||..+++.+..+..+
T Consensus 316 ~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 316 NDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp SEEEEEETTTTEEEEEEECS
T ss_pred CeEEEEeccccceeeeeecC
Confidence 99999999999988887654
No 172
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.81 E-value=4.9e-18 Score=153.76 Aligned_cols=259 Identities=13% Similarity=0.098 Sum_probs=172.8
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEEC----------CCcEEEEeCCCCcceeEEecC------CCCEEEEEEcCCCCE
Q 012799 101 SATIAGHTEAVLSVAFSPDGRQLASGSG----------DTTVRLWDLNTQTPMFKCTGH------KNWVLCIAWSADGKH 164 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~----------d~~v~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~ 164 (456)
..++..+..+ .++|+|||++++++.. ++.|.+||..+.+.+..+... ......++++|||++
T Consensus 44 ~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~ 121 (361)
T 2oiz_A 44 LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKF 121 (361)
T ss_dssp EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSE
T ss_pred EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCE
Confidence 3445555555 8999999999998862 568999999998888777532 345678999999999
Q ss_pred EEEEeC--CCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC-CeEEEE------
Q 012799 165 LVSGSK--AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVIC------ 235 (456)
Q Consensus 165 l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~------ 235 (456)
|+++.. ++.|.+||+.+++.+...+. ... ...+.+.|. ....+++.+.||.+.+|+... ++....
T Consensus 122 l~v~n~~~~~~v~v~d~~~~~~~~~~i~-~~~-~~~v~~~p~----~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~ 195 (361)
T 2oiz_A 122 IVLQNASPATSIGIVDVAKGDYVEDVTA-AAG-CWSVIPQPN----RPRSFMTICGDGGLLTINLGEDGKVASQSRSKQM 195 (361)
T ss_dssp EEEEEESSSEEEEEEETTTTEEEEEEGG-GTT-EEEEEECTT----SSSEEEEEETTSSEEEEEECTTSSEEEEEECCCC
T ss_pred EEEECCCCCCeEEEEECCCCcEEEEEec-CCC-cceeEEcCC----CCeeEEEECCCCcEEEEEECCCCcEeeeccccce
Confidence 998874 57899999998876542011 111 122445552 236788899999999999865 444311
Q ss_pred ecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeE--EEEeecCC----------cceEEEEecCcceeeeccccC
Q 012799 236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKL--IRELKGHG----------HWVNSLALSTEYALRTGAFDH 302 (456)
Q Consensus 236 ~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~----------~~i~~~~~~~~~~~~~~~~~~ 302 (456)
+.....++ .+.+.+++ .++..+.++.+.++|+..+.. ...+.... .....++++++
T Consensus 196 ~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d---------- 264 (361)
T 2oiz_A 196 FSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA---------- 264 (361)
T ss_dssp SCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT----------
T ss_pred EcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC----------
Confidence 11112221 12223445 566667889999999875432 22221110 00111455554
Q ss_pred CCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC-----------CCcEEEEecCCCCCCccccccccccEeEEEECCC
Q 012799 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD-----------DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD 371 (456)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~ 371 (456)
+.+++++.. .+.|.+||+.+.+ .+..+..+. +.+++|+||
T Consensus 265 --------------------------g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~-~v~~i~~~~--p~~ia~spd 315 (361)
T 2oiz_A 265 --------------------------SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ-RVARIPGRD--ALSMTIDQQ 315 (361)
T ss_dssp --------------------------TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE-EEEEEECTT--CCEEEEETT
T ss_pred --------------------------CCeEEEEEccCCCcccccCCCceEEEEECCCCc-EEEEEecCC--eeEEEECCC
Confidence 344554432 3489999977654 444455555 899999999
Q ss_pred CCEEEEEECCCcEEEEeCCCC--eEEEEEecccccEEEE
Q 012799 372 GQWVASASFDKSIKLWNGTTG--KFVAVFRGHVGPVYQI 408 (456)
Q Consensus 372 ~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~i 408 (456)
|++|++++. +.|.+||..++ +.+..+..+...-..+
T Consensus 316 g~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~ 353 (361)
T 2oiz_A 316 RNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQV 353 (361)
T ss_dssp TTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEE
T ss_pred CCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEE
Confidence 999998886 99999999999 9998886666666777
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.81 E-value=5.5e-17 Score=142.38 Aligned_cols=234 Identities=12% Similarity=0.211 Sum_probs=168.4
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccc-----cCcccceEEEEec-ccccCCCCCEEEEEeC-CC
Q 012799 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL-----SGHKKWITGISWE-PVHLNAPCRRFVSASK-DG 220 (456)
Q Consensus 148 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~v~~~~~~-~~~~~~~~~~l~~~~~-dg 220 (456)
++-..+.+++++++++++++...++.|.+||.+ ++...... .++...+..+++. + ++..+++... ++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~-----~g~l~v~~~~~~~ 100 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN-----SGDIIVTERSPTH 100 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT-----TTEEEEEECGGGC
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC-----CCeEEEEcCCCCC
Confidence 455678999999999988888889999999987 44332111 1244567888884 4 5555555533 78
Q ss_pred cEEEEECCCCeEEEEec-CcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCcceEEEEecCcceee
Q 012799 221 DARIWDVSLRKCVICLS-GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK--GHGHWVNSLALSTEYALR 296 (456)
Q Consensus 221 ~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~ 296 (456)
.|++|| .+++.+..+. .+...+.++++++++ .+++...++.|.+||.. ++.+..+. .+...+..++++++
T Consensus 101 ~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~---- 174 (286)
T 1q7f_A 101 QIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDK---- 174 (286)
T ss_dssp EEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSS----
T ss_pred EEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCC----
Confidence 999999 5666666553 344678999999999 55555567899999964 56665554 23446788998887
Q ss_pred eccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccc--cccccEeEEEECCCCCE
Q 012799 297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT--GHQQLVNHVYFSPDGQW 374 (456)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~ 374 (456)
++.+++...++.|++||... . ....+. ++...+..++++++|++
T Consensus 175 --------------------------------g~l~v~~~~~~~i~~~~~~g-~-~~~~~~~~g~~~~p~~i~~d~~G~l 220 (286)
T 1q7f_A 175 --------------------------------QEIFISDNRAHCVKVFNYEG-Q-YLRQIGGEGITNYPIGVGINSNGEI 220 (286)
T ss_dssp --------------------------------SEEEEEEGGGTEEEEEETTC-C-EEEEESCTTTSCSEEEEEECTTCCE
T ss_pred --------------------------------CCEEEEECCCCEEEEEcCCC-C-EEEEEccCCccCCCcEEEECCCCCE
Confidence 44477777889999999632 2 222232 22357899999999998
Q ss_pred EEEEECCC-cEEEEeCCCCeEEEEEecccc--cEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCC
Q 012799 375 VASASFDK-SIKLWNGTTGKFVAVFRGHVG--PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS 451 (456)
Q Consensus 375 l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~--~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg 451 (456)
+++...++ .|.+||. +++.+..+..+.. .+.++ +++|+|+++++ +.|+
T Consensus 221 ~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i---------------------------~~~~~g~l~vs-~~~~ 271 (286)
T 1q7f_A 221 LIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDV---------------------------ALMDDGSVVLA-SKDY 271 (286)
T ss_dssp EEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEE---------------------------EEETTTEEEEE-ETTT
T ss_pred EEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeE---------------------------EECCCCcEEEE-CCCC
Confidence 88887776 9999995 5777777765433 35566 88999987777 6799
Q ss_pred ceEEC
Q 012799 452 TLKVT 456 (456)
Q Consensus 452 ~v~iW 456 (456)
+|++|
T Consensus 272 ~v~v~ 276 (286)
T 1q7f_A 272 RLYIY 276 (286)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 99998
No 174
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.81 E-value=6.1e-16 Score=136.52 Aligned_cols=277 Identities=9% Similarity=0.026 Sum_probs=190.3
Q ss_pred ccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeE-EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 012799 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK-CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (456)
Q Consensus 104 l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 182 (456)
+..+...+.+++++++|+++++...++.|.+||.. ++.... ...+...+.++++.++|+++++...++.|..|+.. +
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 34566789999999999977776667899999988 543322 22345789999999999988877778899999986 3
Q ss_pred CCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEE-EecCcCccEEEEEeCCCCeEEEEe-CC
Q 012799 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI-CLSGHTLAVTCVKWGGDGVIYTGS-QD 260 (456)
Q Consensus 183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~l~~~~-~d 260 (456)
+............+.++++.+ ++..+++...++.|..||. +++... ........+..+++++++.++.+. .+
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~ 161 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGP-----NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQN 161 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECT-----TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred cEEEEeCCCcCCCceeeEECC-----CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCC
Confidence 322111222345688888887 7877777777889999998 444332 233345678999999998555544 56
Q ss_pred CcEEEEECCCCeEEEE-eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC
Q 012799 261 CTIKVWETTQGKLIRE-LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339 (456)
Q Consensus 261 g~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 339 (456)
+.|..||. +++.... .......+..+++.++ +..+++...++
T Consensus 162 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~------------------------------------g~l~v~~~~~~ 204 (299)
T 2z2n_A 162 NAIGRITE-SGDITEFKIPTPASGPVGITKGND------------------------------------DALWFVEIIGN 204 (299)
T ss_dssp TEEEEECT-TCCEEEEECSSTTCCEEEEEECTT------------------------------------SSEEEEETTTT
T ss_pred CEEEEEcC-CCcEEEeeCCCCCCcceeEEECCC------------------------------------CCEEEEccCCc
Confidence 88999998 6655432 2333445677887776 44456655678
Q ss_pred cEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEE-EecccccEEEEEeeeeeeecC
Q 012799 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV-FRGHVGPVYQIRFELIYCFRY 418 (456)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~ 418 (456)
.|.+||. ...........+...+.+++++++|++.++...++.|..||. +++.... +..+...+.++
T Consensus 205 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i---------- 272 (299)
T 2z2n_A 205 KIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGI---------- 272 (299)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEE----------
T ss_pred eEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceE----------
Confidence 9999997 433222222334567899999999997776657889999998 5653322 22344566777
Q ss_pred CCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799 419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i 455 (456)
++ ++|+++++.+.++.+++
T Consensus 273 -----------------~~-~~g~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 273 -----------------CF-DGETIWFAMECDKIGKL 291 (299)
T ss_dssp -----------------EE-CSSCEEEEETTTEEEEE
T ss_pred -----------------Ee-cCCCEEEEecCCcEEEE
Confidence 88 88888777665555443
No 175
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=3.5e-18 Score=157.02 Aligned_cols=218 Identities=14% Similarity=0.118 Sum_probs=154.8
Q ss_pred EEEeCCCCcceeEEecCCCCEEE-----EEEcCCCCEEEEEeC-CC--eEEEEeCCCCCCccccccCcccceEEEEeccc
Q 012799 133 RLWDLNTQTPMFKCTGHKNWVLC-----IAWSADGKHLVSGSK-AG--ELQCWDPQTGKPSGNPLSGHKKWITGISWEPV 204 (456)
Q Consensus 133 ~vwd~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 204 (456)
..++..++..+..+..|...... .+|+|||++|+.++. +| .|.+||+.+++... ....+...+..+.|+|
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~sp- 90 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-LTEGRGDNTFGGFLSP- 90 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-CCCSSCBCSSSCEECT-
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-eeeCCCCCccceEEcC-
Confidence 34577778888888877766666 889999999998887 66 48888998887654 3445555555678999
Q ss_pred ccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEE--eCCCC-eEEE----------------------EeC
Q 012799 205 HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVK--WGGDG-VIYT----------------------GSQ 259 (456)
Q Consensus 205 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~-~l~~----------------------~~~ 259 (456)
+++.|+.++.++.|++||+.+++.......+...+.... +++++ .++. ...
T Consensus 91 ----dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (388)
T 3pe7_A 91 ----DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKP 166 (388)
T ss_dssp ----TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCC
T ss_pred ----CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCC
Confidence 999999999999999999999887766665555554444 47888 4432 123
Q ss_pred CCcEEEEECCCCeEEEEeecCCcceEEEEecC-cceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC-
Q 012799 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALST-EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD- 337 (456)
Q Consensus 260 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 337 (456)
++.|.+||+.+++..... .+...+..+.|+| ++ ..++....
T Consensus 167 ~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg------------------------------------~~l~~~~~~ 209 (388)
T 3pe7_A 167 CCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYDD------------------------------------STVAFCHEG 209 (388)
T ss_dssp CEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEE------------------------------------EEEEEEECS
T ss_pred cceEEEEECCCCceEEee-cCCccccccEECCCCC------------------------------------CEEEEEEec
Confidence 467999999998654443 4556788999999 74 33555554
Q ss_pred -----CCcEEEEecCCCCCCcccccccc--ccEeEEEECCCCCEEEEEEC-CC----cEEEEeCCCCeEE
Q 012799 338 -----DFTMFLWEPAVSKQPKTRMTGHQ--QLVNHVYFSPDGQWVASASF-DK----SIKLWNGTTGKFV 395 (456)
Q Consensus 338 -----dg~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~s~~~-dg----~i~iwd~~~~~~~ 395 (456)
...|.++|..... .. .+..+. ..+..++|+|||+.|+..+. ++ .|++||+.+++..
T Consensus 210 ~~~~~~~~l~~~d~~~~~-~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~ 277 (388)
T 3pe7_A 210 PHDLVDARMWLINEDGTN-MR-KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENR 277 (388)
T ss_dssp CTTTSSCSEEEEETTSCC-CE-ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE
T ss_pred CCCCCcceEEEEeCCCCc-eE-EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceE
Confidence 3378888865432 22 233333 35788999999998765443 22 3999999988753
No 176
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.80 E-value=3.9e-18 Score=168.09 Aligned_cols=258 Identities=14% Similarity=0.028 Sum_probs=173.0
Q ss_pred ccccccCCcccEE---------EEEEC--CCCCe-EEEEEC-CCcEEEEeCC--CCcceeEEec-----CCCCEEEEEEc
Q 012799 100 CSATIAGHTEAVL---------SVAFS--PDGRQ-LASGSG-DTTVRLWDLN--TQTPMFKCTG-----HKNWVLCIAWS 159 (456)
Q Consensus 100 ~~~~l~~h~~~V~---------~~~~s--~~~~~-l~~~~~-d~~v~vwd~~--~~~~~~~~~~-----~~~~v~~~~~~ 159 (456)
..+.+..|...+. ...|+ |||+. |+.++. +..|+++++. +......+.. |...+..++|+
T Consensus 59 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~s 138 (662)
T 3azo_A 59 AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLL 138 (662)
T ss_dssp CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEE
T ss_pred CcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEEC
Confidence 3456667766666 66665 99998 776654 5567777765 2033455555 66788999999
Q ss_pred CCCCEEEEEeCC----------CeEEEEeCCC------CCCcccccc-CcccceEEEEecccccCCCCCEEEEEeCC---
Q 012799 160 ADGKHLVSGSKA----------GELQCWDPQT------GKPSGNPLS-GHKKWITGISWEPVHLNAPCRRFVSASKD--- 219 (456)
Q Consensus 160 ~~~~~l~s~~~d----------g~i~vwd~~~------~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~l~~~~~d--- 219 (456)
|||+.|++++.+ ..|.+||+.+ ++.. .+. .+...+..++|+| ||+.|+.++.+
T Consensus 139 pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~Sp-----DG~~la~~~~~~~~ 211 (662)
T 3azo_A 139 PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR--ELSDDAHRFVTGPRLSP-----DGRQAVWLAWDHPR 211 (662)
T ss_dssp TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE--ESSCSCSSEECCCEECT-----TSSEEEEEEECTTC
T ss_pred CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee--EEEecCCCcccCceECC-----CCCEEEEEECCCCC
Confidence 999999998876 5899999987 4433 344 4556778889999 99999988755
Q ss_pred -----CcEEEEECC-CC---eEEEEecCcCccEEEEEeCCCC-eEEEEeCCC--cEEEEECCCCeEEEEeecCCcc----
Q 012799 220 -----GDARIWDVS-LR---KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC--TIKVWETTQGKLIRELKGHGHW---- 283 (456)
Q Consensus 220 -----g~i~iwd~~-~~---~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~---- 283 (456)
..|++||+. ++ +.......+...+..+.|+|+| .++++..++ .|.+||+.+++.......+...
T Consensus 212 ~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~ 291 (662)
T 3azo_A 212 MPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPL 291 (662)
T ss_dssp CTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCC
T ss_pred CCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCcc
Confidence 379999998 56 4444444557889999999999 667777777 6777777677655444332221
Q ss_pred ----eEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc
Q 012799 284 ----VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH 359 (456)
Q Consensus 284 ----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 359 (456)
+..++++++ +..++++.. +.+++|.+.........+..|
T Consensus 292 w~~~~~~~~~~~~------------------------------------~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~ 334 (662)
T 3azo_A 292 WTPGMRWFAPLAN------------------------------------GLIAVVHGK-GAAVLGILDPESGELVDAAGP 334 (662)
T ss_dssp CSTTCCSEEECTT------------------------------------SCEEEEEBS-SSCEEEEEETTTTEEEECCSS
T ss_pred ccccCceEeEeCC------------------------------------CEEEEEEEc-CccEEEEEECCCCcEEEecCC
Confidence 233444443 556888888 999999543322234556667
Q ss_pred cccEeEE-EECCCCCEEEEEECCC--cEEEEeCCCCeEEEEEecc
Q 012799 360 QQLVNHV-YFSPDGQWVASASFDK--SIKLWNGTTGKFVAVFRGH 401 (456)
Q Consensus 360 ~~~v~~~-~~sp~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~ 401 (456)
...+..+ +++++.-++++++.+. .|.+||+.+++.......+
T Consensus 335 ~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~ 379 (662)
T 3azo_A 335 WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARH 379 (662)
T ss_dssp CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCC
T ss_pred CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCC
Confidence 7777777 5544433344555554 4666677777765443444
No 177
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.80 E-value=1.9e-17 Score=148.18 Aligned_cols=237 Identities=14% Similarity=0.127 Sum_probs=174.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeCC------------------------CeEEEEeCCCCCCccccccCcccceEEEEecccc
Q 012799 150 KNWVLCIAWSADGKHLVSGSKA------------------------GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205 (456)
Q Consensus 150 ~~~v~~~~~~~~~~~l~s~~~d------------------------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 205 (456)
-+.+.+++++|+|+++++...+ +.|.+||..+++........+......++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-- 100 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-- 100 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT--
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC--
Confidence 4679999999999988888777 47999999888865433334455788999988
Q ss_pred cCCCCCEEEEEeCCCcEEEEECCCCe-EEEEe---------cCcCccEEEEEeCC-CCeE-EEEe-CCCcEEEEECCCCe
Q 012799 206 LNAPCRRFVSASKDGDARIWDVSLRK-CVICL---------SGHTLAVTCVKWGG-DGVI-YTGS-QDCTIKVWETTQGK 272 (456)
Q Consensus 206 ~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~~l-~~~~-~dg~i~iwd~~~~~ 272 (456)
+|+.+++...++.|++||..... .+..+ ..+......++++| ++.+ ++.+ .++.|++|| .+++
T Consensus 101 ---~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~ 176 (329)
T 3fvz_A 101 ---DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGK 176 (329)
T ss_dssp ---TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSC
T ss_pred ---CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCC
Confidence 88888888889999999986542 34444 23445689999999 6744 4444 589999999 5677
Q ss_pred EEEEeecCC----------cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEE
Q 012799 273 LIRELKGHG----------HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF 342 (456)
Q Consensus 273 ~~~~~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 342 (456)
.+..+.... .....++++++. +..+++...++.|+
T Consensus 177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~-----------------------------------g~l~v~d~~~~~I~ 221 (329)
T 3fvz_A 177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHL-----------------------------------DQLCVADRENGRIQ 221 (329)
T ss_dssp EEEEECEECCSSSCCTTEESCEEEEEEETTT-----------------------------------TEEEEEETTTTEEE
T ss_pred EEEEeccCCCCCCCCCcccCCCcEEEEECCC-----------------------------------CEEEEEECCCCEEE
Confidence 777664322 236778888761 34477778899999
Q ss_pred EEecCCCCCCcccc--ccccccEeEEEECCCCCEEEE-------EECCCcEEEEeCCCCeEEEEEe---cccccEEEEEe
Q 012799 343 LWEPAVSKQPKTRM--TGHQQLVNHVYFSPDGQWVAS-------ASFDKSIKLWNGTTGKFVAVFR---GHVGPVYQIRF 410 (456)
Q Consensus 343 iwd~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~i~~ 410 (456)
+||..++. ....+ ..+...+..++|+| +..+++ ...++.|++||..+++.+..+. ++.....++
T Consensus 222 ~~~~~~G~-~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~i-- 297 (329)
T 3fvz_A 222 CFKTDTKE-FVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDI-- 297 (329)
T ss_dssp EEETTTCC-EEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEE--
T ss_pred EEECCCCc-EEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEE--
Confidence 99976443 33333 34556788999999 433333 3345589999999999998874 566667788
Q ss_pred eeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
+++|+|.++++...+++|++|
T Consensus 298 -------------------------a~~~dG~lyvad~~~~~I~~~ 318 (329)
T 3fvz_A 298 -------------------------VASEDGTVYIGDAHTNTVWKF 318 (329)
T ss_dssp -------------------------EECTTSEEEEEESSSCCEEEE
T ss_pred -------------------------EECCCCCEEEEECCCCEEEEE
Confidence 889999888888899999876
No 178
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.77 E-value=1.2e-16 Score=159.22 Aligned_cols=166 Identities=13% Similarity=0.132 Sum_probs=120.3
Q ss_pred ccccccCCccc-----EEEEEECCCCCeEEEEECC---------CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEE
Q 012799 100 CSATIAGHTEA-----VLSVAFSPDGRQLASGSGD---------TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL 165 (456)
Q Consensus 100 ~~~~l~~h~~~-----V~~~~~s~~~~~l~~~~~d---------~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 165 (456)
+...+.+|... ...++|||||++|+.++.+ +.+.+||+.+++.. .+..|...+...+|||||+.|
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~l 126 (740)
T 4a5s_A 48 SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKL 126 (740)
T ss_dssp EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCE
T ss_pred eEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEE
Confidence 34445555532 3458899999999998875 56779999988744 466778899999999999999
Q ss_pred EEEeCCCeEEEEeCCCCCCccccccCcccce-----------------EEEEecccccCCCCCEEEEEeCCC--------
Q 012799 166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWI-----------------TGISWEPVHLNAPCRRFVSASKDG-------- 220 (456)
Q Consensus 166 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~~~~~~l~~~~~dg-------- 220 (456)
|.+. ++.|.+|++.+++.......++...+ ..+.|+| ||+.|+.++.|.
T Consensus 127 a~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-----Dg~~la~~~~d~~~v~~~~~ 200 (740)
T 4a5s_A 127 AYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-----NGTFLAYAQFNDTEVPLIEY 200 (740)
T ss_dssp EEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-----TSSEEEEEEEECTTCCEEEE
T ss_pred EEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECC-----CCCEEEEEEEcccCCceEEE
Confidence 9884 68999999988875543333333322 3488999 999999875321
Q ss_pred ----------------------------cEEEEECCC---C---eEEEEec-----CcCccEEEEEeCCCCe-EEEEeC-
Q 012799 221 ----------------------------DARIWDVSL---R---KCVICLS-----GHTLAVTCVKWGGDGV-IYTGSQ- 259 (456)
Q Consensus 221 ----------------------------~i~iwd~~~---~---~~~~~~~-----~~~~~v~~~~~~~~~~-l~~~~~- 259 (456)
.|++||+.+ + +...... ++...+..++|+|+|. ++....
T Consensus 201 ~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r 280 (740)
T 4a5s_A 201 SFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRR 280 (740)
T ss_dssp EECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEES
T ss_pred EeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCC
Confidence 488899988 7 3333222 3777899999999993 443322
Q ss_pred ---CCcEEEEECCCCe
Q 012799 260 ---DCTIKVWETTQGK 272 (456)
Q Consensus 260 ---dg~i~iwd~~~~~ 272 (456)
+..|.+||+.+++
T Consensus 281 ~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 281 IQNYSVMDICDYDESS 296 (740)
T ss_dssp STTEEEEEEEEEETTT
T ss_pred CCCEEEEEEEECCCCc
Confidence 2369999998876
No 179
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.75 E-value=4.5e-16 Score=154.33 Aligned_cols=247 Identities=11% Similarity=0.072 Sum_probs=164.5
Q ss_pred CCCCeEEEEECCC-----cEEEEeCCCCcceeEEe------cCCCCEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCC
Q 012799 118 PDGRQLASGSGDT-----TVRLWDLNTQTPMFKCT------GHKNWVLCIAWSADGKHLVSGSKAG-----ELQCWDPQT 181 (456)
Q Consensus 118 ~~~~~l~~~~~d~-----~v~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~ 181 (456)
|+|++++....++ .+.+.+...++....+. +|...+..++|||||++|+.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 7787776554221 34444444444322221 2434688999999999999776543 899999999
Q ss_pred CCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCc----------------EEEEECCCCe----EEEEecCcCc
Q 012799 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD----------------ARIWDVSLRK----CVICLSGHTL 241 (456)
Q Consensus 182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~----------------i~iwd~~~~~----~~~~~~~~~~ 241 (456)
++...... ....+..++|+| ||+.|+.++.++. |++|++.+++ .+.....+..
T Consensus 161 g~~~~~~~--~~~~~~~~~wsp-----Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~ 233 (710)
T 2xdw_A 161 AKELPDVL--ERVKFSCMAWTH-----DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPK 233 (710)
T ss_dssp TEEEEEEE--EEECSCCEEECT-----TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTT
T ss_pred CCCCcccc--cCcccceEEEEe-----CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCe
Confidence 87654222 222366789999 9999999988766 9999998765 2223333556
Q ss_pred cEEEEEeCCCC-eEEEEeC-----CCcEEEEECCC------Ce-EEEEeecCCcceEEEEecCcceeeeccccCCCCccC
Q 012799 242 AVTCVKWGGDG-VIYTGSQ-----DCTIKVWETTQ------GK-LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS 308 (456)
Q Consensus 242 ~v~~~~~~~~~-~l~~~~~-----dg~i~iwd~~~------~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 308 (456)
.+..+.|+|+| .|+.++. +..|++||+.+ +. ....+..+...+.. .++++
T Consensus 234 ~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~d---------------- 296 (710)
T 2xdw_A 234 WMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNE---------------- 296 (710)
T ss_dssp CEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEE----------------
T ss_pred EEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEecc----------------
Confidence 68899999999 5655543 56899999976 43 34445544444443 35555
Q ss_pred ChHHHHHHHHhhhhhccCCCCCEEEEEeC----CCcEEEEecCCCCC-Cccccccccc--cEeEEEECCCCCEEEEEECC
Q 012799 309 SPEEMKKAALERYNKIKGNAPERLVSGSD----DFTMFLWEPAVSKQ-PKTRMTGHQQ--LVNHVYFSPDGQWVASASFD 381 (456)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~-~~~~~~~~~~--~v~~~~~sp~~~~l~s~~~d 381 (456)
++.++..+. .+.|.+||+..... ....+..|.. .+..++|++++.++++...|
T Consensus 297 --------------------g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~ 356 (710)
T 2xdw_A 297 --------------------GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356 (710)
T ss_dssp --------------------TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred --------------------CCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence 344554444 33699999766532 1233444433 68889999888888888888
Q ss_pred Cc--EEEEeCCCCeEEEEEecccccEEEE
Q 012799 382 KS--IKLWNGTTGKFVAVFRGHVGPVYQI 408 (456)
Q Consensus 382 g~--i~iwd~~~~~~~~~~~~~~~~v~~i 408 (456)
+. |.+|++.+|+.+..+..+.+.+..+
T Consensus 357 g~~~l~~~~~~~g~~~~~l~~~~~~v~~~ 385 (710)
T 2xdw_A 357 VKNTLQLHDLATGALLKIFPLEVGSVVGY 385 (710)
T ss_dssp TEEEEEEEETTTCCEEEEECCCSSEEEEE
T ss_pred CEEEEEEEECCCCCEEEecCCCCceEEEE
Confidence 84 6667877888878888777778777
No 180
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.75 E-value=1.3e-15 Score=134.33 Aligned_cols=239 Identities=11% Similarity=0.046 Sum_probs=172.3
Q ss_pred CcceeEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC
Q 012799 140 QTPMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK 218 (456)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~ 218 (456)
+..+..+..+.....+++|+|+++ +++++..++.|..|+..++ . . .+..+...+.++++++ ++.++++...
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~-~~~~~~~~~~~l~~~~-----dg~l~v~~~~ 88 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-S-PEMHPSHHQNGHCLNK-----QGHLIACSHG 88 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-E-EEESSCSSEEEEEECT-----TCCEEEEETT
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-E-EEECCCCCcceeeECC-----CCcEEEEecC
Confidence 344455556677789999999998 7788888999999999877 2 2 3445667789999998 8888777777
Q ss_pred CCcEEEEECCCCeEEEEecCc----CccEEEEEeCCCCeEEE-----Ee-------------CCCcEEEEECCCCeEEEE
Q 012799 219 DGDARIWDVSLRKCVICLSGH----TLAVTCVKWGGDGVIYT-----GS-------------QDCTIKVWETTQGKLIRE 276 (456)
Q Consensus 219 dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~l~~-----~~-------------~dg~i~iwd~~~~~~~~~ 276 (456)
++.|.+||..+++........ ...+..++++++|.++. |+ ..+.|..++.. ++. ..
T Consensus 89 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~ 166 (296)
T 3e5z_A 89 LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SA 166 (296)
T ss_dssp TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EE
T ss_pred CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EE
Confidence 789999999777754433221 23456799999995444 22 13466667665 443 34
Q ss_pred eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC---c
Q 012799 277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP---K 353 (456)
Q Consensus 277 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~ 353 (456)
+..+......++++|+ ++.+++.+.++.|++||+...... .
T Consensus 167 ~~~~~~~~~gi~~s~d------------------------------------g~~lv~~~~~~~i~~~~~~~~g~~~~~~ 210 (296)
T 3e5z_A 167 PIRDRVKPNGLAFLPS------------------------------------GNLLVSDTGDNATHRYCLNARGETEYQG 210 (296)
T ss_dssp EECCCSSEEEEEECTT------------------------------------SCEEEEETTTTEEEEEEECSSSCEEEEE
T ss_pred eecCCCCCccEEECCC------------------------------------CCEEEEeCCCCeEEEEEECCCCcCcCCC
Confidence 4445566788999887 455777778899999998632222 1
Q ss_pred cccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeeccccccc
Q 012799 354 TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMS 433 (456)
Q Consensus 354 ~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (456)
..+..+...+..++++++|+++++. ++.|.+||.. ++.+..+..+.. +.++
T Consensus 211 ~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~------------------------- 261 (296)
T 3e5z_A 211 VHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNL------------------------- 261 (296)
T ss_dssp EEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEE-------------------------
T ss_pred eEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeE-------------------------
Confidence 1223345567789999999976665 8889999975 888888887777 7777
Q ss_pred ceeE-ecCCCeEEEeeCCCceEE
Q 012799 434 LYSW-SADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 434 ~~~~-s~dg~~l~s~s~Dg~v~i 455 (456)
+| +|+++.|+.++.++..++
T Consensus 262 --~f~~~d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 262 --CFGGPEGRTLYMTVSTEFWSI 282 (296)
T ss_dssp --EEESTTSCEEEEEETTEEEEE
T ss_pred --EEECCCCCEEEEEcCCeEEEE
Confidence 77 589999999988876654
No 181
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.75 E-value=5.1e-17 Score=149.66 Aligned_cols=242 Identities=14% Similarity=0.079 Sum_probs=159.3
Q ss_pred EEEeCCCCcceeEEecCCCC-----EEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCCCccccccCcccceEEEEeccc
Q 012799 133 RLWDLNTQTPMFKCTGHKNW-----VLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPV 204 (456)
Q Consensus 133 ~vwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 204 (456)
...|..+++.+..+..+... +..++|+|||++|+..... ..|.+||+.+++... ....+......+.|+|
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~sp- 90 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-LTEGKGDNTFGGFIST- 90 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-CCCSSCBCTTTCEECT-
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-eecCCCCccccceECC-
Confidence 34467777777766655433 6788999999998877543 368889998876543 2222222223367888
Q ss_pred ccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEE-------------------EEeCCCC-eEEEE-----eC
Q 012799 205 HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTC-------------------VKWGGDG-VIYTG-----SQ 259 (456)
Q Consensus 205 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~-~l~~~-----~~ 259 (456)
+|+.|+.++.++.|++||+.+++.......+...... +.++|++ .++.+ ..
T Consensus 91 ----dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~ 166 (396)
T 3c5m_A 91 ----DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNP 166 (396)
T ss_dssp ----TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCC
T ss_pred ----CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCC
Confidence 9999999999999999999988766555434332222 3456666 33322 45
Q ss_pred CCcEEEEECCCCeEEEEeecCCcceEEEEecC-cceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC
Q 012799 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALST-EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (456)
Q Consensus 260 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 338 (456)
+..|++||+.+++..... .+...+..+.|+| ++ ..++..+.+
T Consensus 167 ~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg------------------------------------~~l~~~~~~ 209 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDD------------------------------------STVGFCHEG 209 (396)
T ss_dssp CEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEE------------------------------------EEEEEEECS
T ss_pred cceEEEEECCCCcEEeec-cCCcccccceECCCCC------------------------------------CEEEEEecC
Confidence 668999999988765544 3556788899998 53 334444332
Q ss_pred ------CcEEEEecCCCCCCccccccc-cccEeEEEECCCCCEEEEEECC-----CcEEEEeCCCCeEEEEEecccccEE
Q 012799 339 ------FTMFLWEPAVSKQPKTRMTGH-QQLVNHVYFSPDGQWVASASFD-----KSIKLWNGTTGKFVAVFRGHVGPVY 406 (456)
Q Consensus 339 ------g~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~ 406 (456)
..|.+||+.... ........ ...+..++|+|||++|+.++.+ +.|++||+.+++........ . ..
T Consensus 210 ~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~-~~ 286 (396)
T 3c5m_A 210 PHDLVDARMWLVNEDGSN-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-P-CS 286 (396)
T ss_dssp CSSSCSCCCEEEETTSCC-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-S-EE
T ss_pred CCCCCCceEEEEECCCCc-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-C-CC
Confidence 468888865433 22222221 3358889999999987776544 44999999888754432211 1 12
Q ss_pred EEEeeeeeeecCCCCceeeecccccccceeEec-CCCeEEEee
Q 012799 407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA-DSRLLLSGS 448 (456)
Q Consensus 407 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~s~s 448 (456)
+ .|+| ||++|++++
T Consensus 287 -~---------------------------~~s~~dg~~l~~~~ 301 (396)
T 3c5m_A 287 -H---------------------------LMSNFDGSLMVGDG 301 (396)
T ss_dssp -E---------------------------EEECSSSSEEEEEE
T ss_pred -C---------------------------CccCCCCceEEEec
Confidence 4 8899 999888765
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.75 E-value=8.2e-16 Score=135.55 Aligned_cols=241 Identities=9% Similarity=0.033 Sum_probs=169.2
Q ss_pred ccccCCcccEEEEEECCCCC-eEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799 102 ATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (456)
Q Consensus 102 ~~l~~h~~~V~~~~~s~~~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 180 (456)
..+..+.....+++|+|+|+ +++++..++.|..|+..++ ...+..+...+.+++++++|+++++...++.|.+||..
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 44555677788999999998 7788888999999999876 66666777889999999999988877777899999998
Q ss_pred CCCCccccccC----cccceEEEEecccccCCCCCEEEE----Ee-------------CCCcEEEEECCCCeEEEEecCc
Q 012799 181 TGKPSGNPLSG----HKKWITGISWEPVHLNAPCRRFVS----AS-------------KDGDARIWDVSLRKCVICLSGH 239 (456)
Q Consensus 181 ~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~l~~----~~-------------~dg~i~iwd~~~~~~~~~~~~~ 239 (456)
+++... .... ....+..+++.| +|+.+++ |+ ..+.|..++.. ++ ...+..+
T Consensus 99 ~g~~~~-~~~~~~~~~~~~~~~i~~d~-----~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~ 170 (296)
T 3e5z_A 99 GGEWES-IADSFEGKKLNSPNDVCLAP-----DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRD 170 (296)
T ss_dssp TCCEEE-EECEETTEECCCCCCEEECT-----TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECC
T ss_pred CCcEEE-EeeccCCCCCCCCCCEEECC-----CCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecC
Confidence 876432 1111 112456788887 8888887 33 13456666655 43 3344455
Q ss_pred CccEEEEEeCCCC-eEEEEeCCCcEEEEECC-CCeE---EEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHH
Q 012799 240 TLAVTCVKWGGDG-VIYTGSQDCTIKVWETT-QGKL---IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK 314 (456)
Q Consensus 240 ~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~-~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (456)
......++|+|++ .+++.+.++.|.+||+. +++. ...+..+...+..++++++
T Consensus 171 ~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~---------------------- 228 (296)
T 3e5z_A 171 RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAG---------------------- 228 (296)
T ss_dssp CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTT----------------------
T ss_pred CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCC----------------------
Confidence 6678899999999 56666778899999987 4544 2233223334556666665
Q ss_pred HHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEE-CCCCCEEEEEECCCcEEEEeCCCCe
Q 012799 315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF-SPDGQWVASASFDKSIKLWNGTTGK 393 (456)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-sp~~~~l~s~~~dg~i~iwd~~~~~ 393 (456)
++.+++ . ++.|.+||.. ......+..+.. +++++| +|+++.|++++.++ +.-++.++.+
T Consensus 229 --------------G~l~v~-~-~~~v~~~~~~--g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~ 288 (296)
T 3e5z_A 229 --------------GLIWAS-A-GDGVHVLTPD--GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRG 288 (296)
T ss_dssp --------------SCEEEE-E-TTEEEEECTT--SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCB
T ss_pred --------------CCEEEE-c-CCeEEEECCC--CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccc
Confidence 443444 4 8899999964 334444555556 899999 68999888888764 5566766655
Q ss_pred E
Q 012799 394 F 394 (456)
Q Consensus 394 ~ 394 (456)
+
T Consensus 289 ~ 289 (296)
T 3e5z_A 289 L 289 (296)
T ss_dssp C
T ss_pred c
Confidence 4
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.75 E-value=3.6e-16 Score=154.96 Aligned_cols=244 Identities=14% Similarity=0.073 Sum_probs=170.0
Q ss_pred CCcccEEEEEECCCCCeEEEEECCC-----cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCe-------
Q 012799 106 GHTEAVLSVAFSPDGRQLASGSGDT-----TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE------- 173 (456)
Q Consensus 106 ~h~~~V~~~~~s~~~~~l~~~~~d~-----~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~------- 173 (456)
+|...+..++|||||++||.+..++ .|++||+.+++.......+ ..+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 4666799999999999999876543 8999999998876533222 23678999999999999888765
Q ss_pred ---------EEEEeCCCCCCcccc---ccCcccceEEEEecccccCCCCCEEEEEeC-----CCcEEEEECCC------C
Q 012799 174 ---------LQCWDPQTGKPSGNP---LSGHKKWITGISWEPVHLNAPCRRFVSASK-----DGDARIWDVSL------R 230 (456)
Q Consensus 174 ---------i~vwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~------~ 230 (456)
|.+|++.+++..... ...+...+..+.|+| +|++|+.++. +..|++||+.+ +
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-----Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 275 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-----DGRYVLLSIREGCDPVNRLWYCDLQQESNGITG 275 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-----TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-----CCCEEEEEEEccCCCccEEEEEECcccccccCC
Confidence 999999887632111 122455678899999 9999888765 57899999976 4
Q ss_pred e-EEEEecCcCccEEEEEeCCCC-eEEEEeCC----CcEEEEECCCCeE--EEEeecCCc--ceEEEEecCcceeeeccc
Q 012799 231 K-CVICLSGHTLAVTCVKWGGDG-VIYTGSQD----CTIKVWETTQGKL--IRELKGHGH--WVNSLALSTEYALRTGAF 300 (456)
Q Consensus 231 ~-~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d----g~i~iwd~~~~~~--~~~~~~~~~--~i~~~~~~~~~~~~~~~~ 300 (456)
. ....+..+...+.. .|+++| .|+..+.. +.|.+||+.++.. ...+..+.. .+..+.++++
T Consensus 276 ~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------- 346 (710)
T 2xdw_A 276 ILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRS-------- 346 (710)
T ss_dssp SCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETT--------
T ss_pred ccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcC--------
Confidence 2 34445555555544 467777 55554443 3699999987641 233433333 5777777754
Q ss_pred cCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCc--EEEEecCCCCCCccccccccccEeEEEECCCCCEEEEE
Q 012799 301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT--MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA 378 (456)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~ 378 (456)
+..+++...++. |.+||+..+. ....+..+...+..+.++|+++.++..
T Consensus 347 ----------------------------~~lv~~~~~~g~~~l~~~~~~~g~-~~~~l~~~~~~v~~~~~s~d~~~l~~~ 397 (710)
T 2xdw_A 347 ----------------------------NFLVLCYLHDVKNTLQLHDLATGA-LLKIFPLEVGSVVGYSGQKKDTEIFYQ 397 (710)
T ss_dssp ----------------------------TEEEEEEEETTEEEEEEEETTTCC-EEEEECCCSSEEEEEECCTTCSEEEEE
T ss_pred ----------------------------CEEEEEEEECCEEEEEEEECCCCC-EEEecCCCCceEEEEecCCCCCEEEEE
Confidence 345778888885 5566654443 334455567788999999998766533
Q ss_pred -E---CCCcEEEEeCCCCe
Q 012799 379 -S---FDKSIKLWNGTTGK 393 (456)
Q Consensus 379 -~---~dg~i~iwd~~~~~ 393 (456)
+ ..+.++.||+.+++
T Consensus 398 ~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 398 FTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EECSSCCCEEEEEETTSSS
T ss_pred EeCCCCCCEEEEEECCCCc
Confidence 2 34789999998877
No 184
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.74 E-value=1.3e-15 Score=132.24 Aligned_cols=240 Identities=8% Similarity=-0.057 Sum_probs=166.7
Q ss_pred cEEEEEECCCCCeEE-EEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799 110 AVLSVAFSPDGRQLA-SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~-~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 188 (456)
...+++++++|++++ +...++.|.+|+..+.........+...+.++++.++++++++.. ++.|.+||...+.... .
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~-~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV-L 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE-C
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee-e
Confidence 678999999999777 446788999999765543322223445788999999998666655 8899999987654332 2
Q ss_pred ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeE-EEEeCCCcEEEEE
Q 012799 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVI-YTGSQDCTIKVWE 267 (456)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l-~~~~~dg~i~iwd 267 (456)
.......+.++++.+ ++..+++...++.|.+|+..+.............+.++++++++.+ ++...++.|.+||
T Consensus 103 ~~~~~~~p~~i~~~~-----~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~ 177 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDT-----QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE 177 (270)
T ss_dssp CCCSCSSEEEEEECT-----TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEEC
T ss_pred ecCCcCCCcceEECC-----CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEe
Confidence 222335678899988 7887777777889999987655443322233346788999998844 4445578999999
Q ss_pred CCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecC
Q 012799 268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA 347 (456)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 347 (456)
................+..++++++ +..+++...++.|.+||..
T Consensus 178 ~~~~~~~~~~~~~~~~p~~i~~d~~------------------------------------g~l~v~~~~~~~v~~~~~~ 221 (270)
T 1rwi_B 178 AESNNQVVLPFTDITAPWGIAVDEA------------------------------------GTVYVTEHNTNQVVKLLAG 221 (270)
T ss_dssp TTTCCEEECCCSSCCSEEEEEECTT------------------------------------CCEEEEETTTSCEEEECTT
T ss_pred cCCCceEeecccCCCCceEEEECCC------------------------------------CCEEEEECCCCcEEEEcCC
Confidence 8876654433333356778888876 4446666678899999965
Q ss_pred CCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCe
Q 012799 348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK 393 (456)
Q Consensus 348 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~ 393 (456)
.... ......+...+.+++++++|+++++...++.|++++....+
T Consensus 222 ~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 222 STTS-TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CSCC-EECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCcc-eeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 4332 22222333568999999999988888889999999987644
No 185
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.73 E-value=6.5e-17 Score=159.83 Aligned_cols=242 Identities=11% Similarity=-0.022 Sum_probs=165.3
Q ss_pred CCcccEEEEEECCCCCeEEEE-----ECCCcEEEEeCCCCcce-eEEecCCCCE--EEEEEcCCCCEEEEEeCCCe----
Q 012799 106 GHTEAVLSVAFSPDGRQLASG-----SGDTTVRLWDLNTQTPM-FKCTGHKNWV--LCIAWSADGKHLVSGSKAGE---- 173 (456)
Q Consensus 106 ~h~~~V~~~~~s~~~~~l~~~-----~~d~~v~vwd~~~~~~~-~~~~~~~~~v--~~~~~~~~~~~l~s~~~dg~---- 173 (456)
+|...+.+++|||||++||.+ +.+..|++||+.+++.+ .. +...+ ..++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~---~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD---VIEGGKYATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC---CBSCCTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc---ccCcccccceEEecCCCEEEEEEecCCCCCc
Confidence 577789999999999999944 34568999999998865 21 22222 68999999999999988776
Q ss_pred ---------EEEEeCCCCCCccc---cccCcccceEEEEecccccCCCCCEEEEEeCCC----cEEEEECCCCeEEEEec
Q 012799 174 ---------LQCWDPQTGKPSGN---PLSGHKKWITGISWEPVHLNAPCRRFVSASKDG----DARIWDVSLRKCVICLS 237 (456)
Q Consensus 174 ---------i~vwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~ 237 (456)
|++|++.++..... ....+...+..+.|+| +|++++.++.++ .|++|+..+++.. .+.
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-----DG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~ 268 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-----DGKYLFVYILRGWSENDVYWKRPGEKDFR-LLV 268 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-----TSCCEEEEEEETTTEEEEEEECTTCSSCE-EEE
T ss_pred cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-----CCCEEEEEEeCCCCceEEEEEcCCCCceE-Eee
Confidence 99999988763211 1223456788999999 999998887766 6778876555433 333
Q ss_pred CcCccEEEEEeCCCCeEEEEeC----CCcEEEEECCCCeE---EEEeecC-CcceEEEEecCcceeeeccccCCCCccCC
Q 012799 238 GHTLAVTCVKWGGDGVIYTGSQ----DCTIKVWETTQGKL---IRELKGH-GHWVNSLALSTEYALRTGAFDHTGKQYSS 309 (456)
Q Consensus 238 ~~~~~v~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~---~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (456)
.+...+....+ +++.++..+. ++.|.+||+.+++. ...+..+ ...+..++++ +
T Consensus 269 ~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~----------------- 329 (695)
T 2bkl_A 269 KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-G----------------- 329 (695)
T ss_dssp ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-T-----------------
T ss_pred cCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-C-----------------
Confidence 34444555556 4442444343 57899999987653 3333322 4456667666 3
Q ss_pred hHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc-cccEeEEEECCCCCEEEEEE----CCCcE
Q 012799 310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-QQLVNHVYFSPDGQWVASAS----FDKSI 384 (456)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~s~~----~dg~i 384 (456)
+..+++...|+..++|.+.........+..+ ...+..++++|+++.++... ..+.|
T Consensus 330 -------------------~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v 390 (695)
T 2bkl_A 330 -------------------GHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQI 390 (695)
T ss_dssp -------------------TEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEE
T ss_pred -------------------CEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEE
Confidence 3458888889988888654323333334333 56788889999998766332 34789
Q ss_pred EEEeCCCCeE
Q 012799 385 KLWNGTTGKF 394 (456)
Q Consensus 385 ~iwd~~~~~~ 394 (456)
++||+.+++.
T Consensus 391 ~~~d~~~g~~ 400 (695)
T 2bkl_A 391 YKTSVSTGKS 400 (695)
T ss_dssp EEEETTTCCE
T ss_pred EEEECCCCcE
Confidence 9999988774
No 186
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.73 E-value=5.3e-16 Score=153.33 Aligned_cols=245 Identities=14% Similarity=0.050 Sum_probs=157.6
Q ss_pred CCCCeEEEEECCC---c--EEEEeCCCCcceeEEe------cCCCCEEEEEEcCCCCEEEE-----EeCCCeEEEEeCCC
Q 012799 118 PDGRQLASGSGDT---T--VRLWDLNTQTPMFKCT------GHKNWVLCIAWSADGKHLVS-----GSKAGELQCWDPQT 181 (456)
Q Consensus 118 ~~~~~l~~~~~d~---~--v~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s-----~~~dg~i~vwd~~~ 181 (456)
|+|++++....++ . +.+.+...++....+. +|...+..++|||||++||. |+.+..|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 6788777665433 2 4444544444333322 35557899999999999984 34456899999999
Q ss_pred CCCc-cccccCcccceEEEEecccccCCCCCEEEEEeCCCc-------------EEEEECCCCe----EEEEecCcCccE
Q 012799 182 GKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD-------------ARIWDVSLRK----CVICLSGHTLAV 243 (456)
Q Consensus 182 ~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~-------------i~iwd~~~~~----~~~~~~~~~~~v 243 (456)
++.. ...+... ....++|+| +|+.|+.++.|.. |++|++.++. .+.....+...+
T Consensus 157 g~~~~~~~~~~~--~~~~~~wsp-----Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~ 229 (695)
T 2bkl_A 157 GEWSKVDVIEGG--KYATPKWTP-----DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTF 229 (695)
T ss_dssp CCBCSSCCBSCC--TTCCCEECT-----TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCE
T ss_pred CCCcCCcccCcc--cccceEEec-----CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEE
Confidence 8865 2112111 126789999 9999999998776 9999998765 343444455678
Q ss_pred EEEEeCCCC-eEEEEeCCC----cEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHH
Q 012799 244 TCVKWGGDG-VIYTGSQDC----TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (456)
Q Consensus 244 ~~~~~~~~~-~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (456)
..+.|+|+| .++.++.++ .|++||..+++.. .+..+...+....+ ++
T Consensus 230 ~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~-~~-------------------------- 281 (695)
T 2bkl_A 230 LQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAKYEVHA-WK-------------------------- 281 (695)
T ss_dssp EEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCCEEEEE-ET--------------------------
T ss_pred EEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCceEEEEe-cC--------------------------
Confidence 999999999 666666555 6777776555433 33334444444444 33
Q ss_pred hhhhhccCCCCCEEEEEe---CCCcEEEEecCCCCC--Cccccccc-cccEeEEEECCCCCEEEEEECCCcEEEEeCC-C
Q 012799 319 ERYNKIKGNAPERLVSGS---DDFTMFLWEPAVSKQ--PKTRMTGH-QQLVNHVYFSPDGQWVASASFDKSIKLWNGT-T 391 (456)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~--~~~~~~~~-~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~-~ 391 (456)
+..++.+. .++.|.+||+..... ....+..+ ...+..++|+ ++.++++...|+..++|.+. +
T Consensus 282 ----------g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~ 350 (695)
T 2bkl_A 282 ----------DRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK 350 (695)
T ss_dssp ----------TEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred ----------CcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC
Confidence 23244433 357899999765532 12223333 4568888888 77788899999988888654 4
Q ss_pred CeEEEEEecc-cccEEEE
Q 012799 392 GKFVAVFRGH-VGPVYQI 408 (456)
Q Consensus 392 ~~~~~~~~~~-~~~v~~i 408 (456)
++....+..+ .+.+..+
T Consensus 351 g~~~~~l~~~~~~~v~~~ 368 (695)
T 2bkl_A 351 GKPVRTVQLPGVGAASNL 368 (695)
T ss_dssp CCEEEECCCSSSSEECCC
T ss_pred CCeeEEecCCCCeEEEEe
Confidence 5555555544 4455555
No 187
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.73 E-value=5.2e-14 Score=124.15 Aligned_cols=269 Identities=10% Similarity=0.025 Sum_probs=182.6
Q ss_pred CCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCccee-EEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 012799 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP 184 (456)
Q Consensus 106 ~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 184 (456)
.....+.++++.++|+++++...++.|.+||.. ++... .+......+..+++.+++++.++...++.|..||.. ++.
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 345678999999999988777678899999987 54332 222344679999999999887777668899999987 554
Q ss_pred ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEE-EecCcCccEEEEEeCCCCeEEEEe-CCCc
Q 012799 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI-CLSGHTLAVTCVKWGGDGVIYTGS-QDCT 262 (456)
Q Consensus 185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~l~~~~-~dg~ 262 (456)
...........+.++++.+ ++..+++...++.|..+|.. ++... .+......+.++++++++.++.+. .++.
T Consensus 95 ~~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 168 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGL-----NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNS 168 (300)
T ss_dssp EEEECSSTTCCEEEEEECS-----TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred EEecCCCCCCCCccceECC-----CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCe
Confidence 3212222345688888887 78877777768899999987 54442 233345678999999988555544 4678
Q ss_pred EEEEECCCCeEEEE-eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcE
Q 012799 263 IKVWETTQGKLIRE-LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341 (456)
Q Consensus 263 i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 341 (456)
|..||. +++.... .......+..+++.++ +..+++....+.|
T Consensus 169 i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~------------------------------------g~l~v~~~~~~~i 211 (300)
T 2qc5_A 169 IGRITN-TGKLEEYPLPTNAAAPVGITSGND------------------------------------GALWFVEIMGNKI 211 (300)
T ss_dssp EEEECT-TCCEEEEECSSTTCCEEEEEECTT------------------------------------SSEEEEETTTTEE
T ss_pred EEEECC-CCcEEEeeCCCCCCCcceEEECCC------------------------------------CCEEEEccCCCEE
Confidence 999998 5554432 2223345677777766 4445555566789
Q ss_pred EEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEE-EecccccEEEEEeeeeeeecCCC
Q 012799 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV-FRGHVGPVYQIRFELIYCFRYPS 420 (456)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~ 420 (456)
.+||. .+.........+...+.+++++++|++.++...++.|..||. +++.... +......+.++
T Consensus 212 ~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i------------ 277 (300)
T 2qc5_A 212 GRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGI------------ 277 (300)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCE------------
T ss_pred EEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCcccee------------
Confidence 99996 332222222334566889999999997776666789999998 4543321 22222334444
Q ss_pred CceeeecccccccceeEecCCCeEEEee
Q 012799 421 NFYCVVDMSCCMSLYSWSADSRLLLSGS 448 (456)
Q Consensus 421 ~~~~~~~~~~~~~~~~~s~dg~~l~s~s 448 (456)
+++++|+++++..
T Consensus 278 ---------------~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 278 ---------------TFGKDGSVWFALK 290 (300)
T ss_dssp ---------------EECTTSCEEEECS
T ss_pred ---------------EeCCCCCEEEEcc
Confidence 7899998777665
No 188
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.73 E-value=1.1e-15 Score=138.04 Aligned_cols=233 Identities=12% Similarity=0.103 Sum_probs=157.7
Q ss_pred ccEEEEEECCCCCeEEEEECC---C--cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC------------
Q 012799 109 EAVLSVAFSPDGRQLASGSGD---T--TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA------------ 171 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~~d---~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------------ 171 (456)
..+.+++|+|||++||.++.+ + .|.+|++.+++....... .. +..++|+|||+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 568899999999999987753 2 488888887765544443 33 9999999999999887642
Q ss_pred ---------------CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC-------cEEEEECCC
Q 012799 172 ---------------GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG-------DARIWDVSL 229 (456)
Q Consensus 172 ---------------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg-------~i~iwd~~~ 229 (456)
..|.+||+.+++... .+.. . .+..+.|+| +| .++++..++ ...+|.+.+
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~-~l~~-~-~~~~~~~sp-----dg-~~~~~~~~~~~~~~~~~~~l~~~d~ 207 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIE-EFEK-P-RFSSGIWHR-----DK-IVVNVPHREIIPQYFKFWDIYIWED 207 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEE-EEEE-E-TTCEEEEET-----TE-EEEEEECCCSSCCSSCCEEEEEEET
T ss_pred cceeecCcccccCccceEEEEECCCCeEEe-eecC-C-CcccccCCC-----Ce-EEEEEecccccccccccccEEEeCC
Confidence 569999998877522 2222 3 778899998 88 777775542 334444435
Q ss_pred CeEEEEecCcCccEEEEEeCCCC-eEEEEeCC--------CcEEEEECCCCeEEEEeecCCcceEE-EEecCcceeeecc
Q 012799 230 RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD--------CTIKVWETTQGKLIRELKGHGHWVNS-LALSTEYALRTGA 299 (456)
Q Consensus 230 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~ 299 (456)
++.. .+..+ ..+..+ +|+| .++.++.+ ..|.+|| +++.......+...+.. +.|+ +
T Consensus 208 ~~~~-~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-d------- 273 (347)
T 2gop_A 208 GKEE-KMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-G------- 273 (347)
T ss_dssp TEEE-EEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-T-------
T ss_pred CceE-EeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-C-------
Confidence 5433 33334 455544 8888 66666543 4688888 56555444555666775 7787 6
Q ss_pred ccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEE
Q 012799 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379 (456)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 379 (456)
+ .+++++.++.+++| +. .... ..+..+...|.+++|+| .++++++
T Consensus 274 -----------------------------g-~~~~~~~~~~~~l~-~~-~g~~-~~~~~~~~~v~~~~~s~--~~~~~~~ 318 (347)
T 2gop_A 274 -----------------------------K-VYFTLFEEGSVNLY-IW-DGEI-KPIAKGRHWIMGFDVDE--IVVYLKE 318 (347)
T ss_dssp -----------------------------E-EEEEEEETTEEEEE-EE-SSSE-EEEECSSSEEEEEEESS--SEEEEEE
T ss_pred -----------------------------c-EEEEEecCCcEEEE-Ec-CCce-EEEecCCCeEEeeeeeC--cEEEEEc
Confidence 3 48889999999999 87 3333 33444577899999999 6777777
Q ss_pred CCCcE-EEEeCCCCeEEEEEecccc
Q 012799 380 FDKSI-KLWNGTTGKFVAVFRGHVG 403 (456)
Q Consensus 380 ~dg~i-~iwd~~~~~~~~~~~~~~~ 403 (456)
.++.. .+|.+. ++ ...+..|..
T Consensus 319 ~~~~~~~l~~~~-g~-~~~lt~~n~ 341 (347)
T 2gop_A 319 TATRLRELFTWD-GE-EKQLTDYND 341 (347)
T ss_dssp CSSSCCEEEEES-SS-EEECCCTTS
T ss_pred CCCChHHheEeC-Cc-EEEeccccH
Confidence 77764 777665 54 334554443
No 189
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.72 E-value=1.9e-14 Score=129.18 Aligned_cols=238 Identities=11% Similarity=0.050 Sum_probs=162.0
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC----CeEEE
Q 012799 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA----GELQC 176 (456)
Q Consensus 101 ~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~v 176 (456)
...+.++...+.+++|+|+|++++++..++.|.+||..+++.......+...+.+++++++|+++++...+ +.|.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~ 116 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA 116 (333)
T ss_dssp EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence 34456677788999999999988888888999999998877655444567889999999999988877666 68999
Q ss_pred EeCCCCCCccccc-cCcccceEEEEecccccCCCCCEEEEEeC------CCcEEEEECCCCeEEEEecCcCccEEEEEeC
Q 012799 177 WDPQTGKPSGNPL-SGHKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSGHTLAVTCVKWG 249 (456)
Q Consensus 177 wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 249 (456)
||.+++....... ..+...+.++.++| ++..+++... .+.|..+|..+++.... ......+..++|+
T Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~~i~~d~-----~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~i~~~ 190 (333)
T 2dg1_A 117 ATENGDNLQDIIEDLSTAYCIDDMVFDS-----KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI-IQNISVANGIALS 190 (333)
T ss_dssp ECTTSCSCEEEECSSSSCCCEEEEEECT-----TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE-EEEESSEEEEEEC
T ss_pred EeCCCCEEEEEEccCccCCcccceEECC-----CCCEEEEeccccccCCCceEEEEeCCCCEEEEe-ecCCCcccceEEC
Confidence 9998776532111 12345688999988 7877776553 35677777665444332 2233457889999
Q ss_pred CCC-eEEEE-eCCCcEEEEECCC-CeEEEEe------ec-CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHh
Q 012799 250 GDG-VIYTG-SQDCTIKVWETTQ-GKLIREL------KG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319 (456)
Q Consensus 250 ~~~-~l~~~-~~dg~i~iwd~~~-~~~~~~~------~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (456)
|++ .++++ +.++.|.+||+.+ +..+..+ .. ....+..++++++
T Consensus 191 ~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~--------------------------- 243 (333)
T 2dg1_A 191 TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSD--------------------------- 243 (333)
T ss_dssp TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTT---------------------------
T ss_pred CCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCC---------------------------
Confidence 998 45544 4578999999864 3322211 00 1134566777665
Q ss_pred hhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccccccc------ccEeEEEECCCCCEEEEEECCC
Q 012799 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ------QLVNHVYFSPDGQWVASASFDK 382 (456)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~~v~~~~~sp~~~~l~s~~~dg 382 (456)
+..+++...++.|.+||.. +. ....+..+. ..+.+++|+|+++.|+.++.++
T Consensus 244 ---------G~l~v~~~~~~~v~~~d~~-g~-~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 244 ---------DNLYVAMYGQGRVLVFNKR-GY-PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp ---------CCEEEEEETTTEEEEECTT-SC-EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred ---------CCEEEEEcCCCEEEEECCC-CC-EEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 4456666778899999963 32 233332222 2688999999987776665554
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.72 E-value=8.7e-15 Score=130.70 Aligned_cols=244 Identities=13% Similarity=0.081 Sum_probs=171.3
Q ss_pred ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 188 (456)
.....+++. +++++++...++.|.+||..+++.+.++. .......++++++++..++...++.|.+||..+++.....
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI 121 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence 446777774 45555666667899999999999888885 4567899999988854444448899999999988755322
Q ss_pred ccCc----ccceEEEEecccccCCCCCEEEEEe-CCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeC-C--
Q 012799 189 LSGH----KKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ-D-- 260 (456)
Q Consensus 189 ~~~~----~~~v~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~-d-- 260 (456)
..+. ......+++ . ++..+++.. .++.|.++|..+++.+..+... .....+.++++|.+++++. +
T Consensus 122 ~~g~~~~~~~~p~~i~~-~-----~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~ 194 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ-Y-----GKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYE 194 (328)
T ss_dssp ECTTCCTTTCBCCCEEE-E-----TTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCT
T ss_pred EcCCccccCCCcceEEE-E-----CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCcc
Confidence 2221 113445555 2 444444443 4889999999999988777543 3356788999995554443 3
Q ss_pred --------CcEEEEECCCCeEEEEeecC-CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCE
Q 012799 261 --------CTIKVWETTQGKLIRELKGH-GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331 (456)
Q Consensus 261 --------g~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (456)
+.|.++|..+++....+... ......++++|+ +++
T Consensus 195 ~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d------------------------------------~~~ 238 (328)
T 3dsm_A 195 GSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGT------------------------------------RDT 238 (328)
T ss_dssp TCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTT------------------------------------SCE
T ss_pred CCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecC------------------------------------CCE
Confidence 68999999999888777543 346788999987 444
Q ss_pred EEEEeCCCcEEEEecCCCCCCccc-cccccccEeEEEECC-CCCEEEEE----ECCCcEEEEeCCCCeEEEEEec
Q 012799 332 LVSGSDDFTMFLWEPAVSKQPKTR-MTGHQQLVNHVYFSP-DGQWVASA----SFDKSIKLWNGTTGKFVAVFRG 400 (456)
Q Consensus 332 l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~sp-~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~ 400 (456)
++++.. .|.+||..+....... ..........++++| ++++.++. ..++.|.+||.. |+.+..+..
T Consensus 239 lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 239 LYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp EEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred EEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence 666544 8999997665532221 222245688999999 56666665 578999999987 999888864
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.72 E-value=3.9e-15 Score=129.00 Aligned_cols=236 Identities=14% Similarity=0.082 Sum_probs=172.5
Q ss_pred CCCeEEEEECCCcEEEEeCCCCcceeEEecCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceE
Q 012799 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHK-NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWIT 197 (456)
Q Consensus 119 ~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~ 197 (456)
.+++|++++.|+.|.+||.++++.+.++..+. ..+.++.++|+|++++ +.++.|..||. +++.+..........+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 46789999999999999999999999988766 5789999999999888 45778999999 78766543333334677
Q ss_pred EEEecccccCCCCCEEEEEeC-CCcEEEEECCCCeEEEEec------CcCccEEEEEeCCCC-eEEEEeCCCcEEEEECC
Q 012799 198 GISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVICLS------GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT 269 (456)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~ 269 (456)
++.+.+ +|+.+++.+. ++.+..+|. +++.+..+. .+......++..++| ++++...++.|..||..
T Consensus 81 ~~~~~~-----dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 81 TARILP-----DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN 154 (276)
T ss_dssp EEEECT-----TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred ccEECC-----CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence 888877 9999999887 778888886 666666553 122234456778888 78888889999999998
Q ss_pred CCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCC
Q 012799 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS 349 (456)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 349 (456)
|+.+.++.... ...++...++ ++.++++..++.|..+|..++
T Consensus 155 -G~~~w~~~~~~-~~~~~~~~~~------------------------------------g~~~v~~~~~~~v~~~d~~tG 196 (276)
T 3no2_A 155 -GQLLNSVKLSG-TPFSSAFLDN------------------------------------GDCLVACGDAHCFVQLNLESN 196 (276)
T ss_dssp -SCEEEEEECSS-CCCEEEECTT------------------------------------SCEEEECBTTSEEEEECTTTC
T ss_pred -CCEEEEEECCC-CccceeEcCC------------------------------------CCEEEEeCCCCeEEEEeCcCC
Confidence 99998887643 3344455554 566888888889999996655
Q ss_pred CCCccccccc------cccEeEEEECCCCCEEEEEECC--------CcEEEEeC-CCCeEEEEEeccc
Q 012799 350 KQPKTRMTGH------QQLVNHVYFSPDGQWVASASFD--------KSIKLWNG-TTGKFVAVFRGHV 402 (456)
Q Consensus 350 ~~~~~~~~~~------~~~v~~~~~sp~~~~l~s~~~d--------g~i~iwd~-~~~~~~~~~~~~~ 402 (456)
+... .+..+ -..+..++..++|+++++.... +..+++++ .+|+.+..+..+.
T Consensus 197 ~~~w-~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~ 263 (276)
T 3no2_A 197 RIVR-RVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKV 263 (276)
T ss_dssp CEEE-EEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTT
T ss_pred cEEE-EecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcc
Confidence 5432 23221 1347889999999988887421 23355555 5788888877543
No 192
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.69 E-value=1.2e-14 Score=126.12 Aligned_cols=234 Identities=6% Similarity=-0.060 Sum_probs=157.1
Q ss_pred CEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC
Q 012799 152 WVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR 230 (456)
Q Consensus 152 ~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 230 (456)
...+++++++|++++ +.+.++.|.+|+..++.... ....+...+.++++.+ +++.+++.. ++.|.+||....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~~i~~~~-----~g~l~v~~~-~~~i~~~d~~~~ 97 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LPFNGLYQPQGLAVDG-----AGTVYVTDF-NNRVVTLAAGSN 97 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-CCCCSCCSCCCEEECT-----TCCEEEEET-TTEEEEECTTCS
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-EeeCCcCCcceeEECC-----CCCEEEEcC-CCEEEEEeCCCc
Confidence 678999999998776 44678899999986654322 1222334577888887 777665555 889999998766
Q ss_pred eEEEEecCcCccEEEEEeCCCCe-EEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCC
Q 012799 231 KCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSS 309 (456)
Q Consensus 231 ~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (456)
............+.+++++++|. +++...++.|.+|+..+................++++++
T Consensus 98 ~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~----------------- 160 (270)
T 1rwi_B 98 NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS----------------- 160 (270)
T ss_dssp CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTT-----------------
T ss_pred eEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCC-----------------
Confidence 54322222335789999999984 444456788999987655443322222334566777765
Q ss_pred hHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeC
Q 012799 310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389 (456)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~ 389 (456)
+..+++...++.|.+||...... ......+...+..++++++|.++++...++.|.+|+.
T Consensus 161 -------------------g~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~ 220 (270)
T 1rwi_B 161 -------------------GNVYVTDTDNNRVVKLEAESNNQ-VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA 220 (270)
T ss_dssp -------------------CCEEEEEGGGTEEEEECTTTCCE-EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECT
T ss_pred -------------------CCEEEEECCCCEEEEEecCCCce-EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcC
Confidence 44466666788999999654432 2222233356889999999987777777889999998
Q ss_pred CCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 390 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
...........+...+.++ +++++|+++++...+++|+++
T Consensus 221 ~~~~~~~~~~~~~~~p~~i---------------------------~~~~~g~l~v~~~~~~~v~~~ 260 (270)
T 1rwi_B 221 GSTTSTVLPFTGLNTPLAV---------------------------AVDSDRTVYVADRGNDRVVKL 260 (270)
T ss_dssp TCSCCEECCCCSCSCEEEE---------------------------EECTTCCEEEEEGGGTEEEEE
T ss_pred CCCcceeeccCCCCCceeE---------------------------EECCCCCEEEEECCCCEEEEE
Confidence 6654333222233456677 889999988998899999863
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.68 E-value=1.5e-14 Score=129.11 Aligned_cols=253 Identities=9% Similarity=-0.009 Sum_probs=169.4
Q ss_pred CCCcEEEEeCCCCcceeEEe------cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEe
Q 012799 128 GDTTVRLWDLNTQTPMFKCT------GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISW 201 (456)
Q Consensus 128 ~d~~v~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~ 201 (456)
.+++|.++|..+++....+. ........+.+. +++..++...++.|.+||..+++.+... ........+++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i--~~~~~p~~i~~ 91 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI--TGFTSPRYIHF 91 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE--ECCSSEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc--CCCCCCcEEEE
Confidence 37899999999887654431 122446778774 4555556666799999999999876533 23456788888
Q ss_pred cccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcC-----ccEEEEEeCCCCeEEEEe--CCCcEEEEECCCCeEE
Q 012799 202 EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT-----LAVTCVKWGGDGVIYTGS--QDCTIKVWETTQGKLI 274 (456)
Q Consensus 202 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~ 274 (456)
++ ++..+++...++.|.+||..+++....+.... .....+++ .++.++++. .++.|.++|+.+++.+
T Consensus 92 ~~-----~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~ 165 (328)
T 3dsm_A 92 LS-----DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVV 165 (328)
T ss_dssp EE-----TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEE
T ss_pred eC-----CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEE
Confidence 77 77444444478999999999998877665322 13456666 455666665 4889999999999988
Q ss_pred EEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC----------CcEEEE
Q 012799 275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD----------FTMFLW 344 (456)
Q Consensus 275 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------g~i~iw 344 (456)
..+... .....+.++++ +++++++..+ +.|.++
T Consensus 166 ~~i~~g-~~p~~i~~~~d------------------------------------G~l~v~~~~~~~~~~~~~~~~~v~~i 208 (328)
T 3dsm_A 166 DELTIG-IQPTSLVMDKY------------------------------------NKMWTITDGGYEGSPYGYEAPSLYRI 208 (328)
T ss_dssp EEEECS-SCBCCCEECTT------------------------------------SEEEEEBCCBCTTCSSCBCCCEEEEE
T ss_pred EEEEcC-CCccceEEcCC------------------------------------CCEEEEECCCccCCccccCCceEEEE
Confidence 877643 23456666666 3335554443 789999
Q ss_pred ecCCCCCCccccc-cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEE--EecccccEEEEEeeeeeeecCCCC
Q 012799 345 EPAVSKQPKTRMT-GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV--FRGHVGPVYQIRFELIYCFRYPSN 421 (456)
Q Consensus 345 d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~~~~~ 421 (456)
|..+.+ ....+. ........++|+|++++|+++.. .|.+||..+++.... +..+......+
T Consensus 209 d~~t~~-v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi------------- 272 (328)
T 3dsm_A 209 DAETFT-VEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGL------------- 272 (328)
T ss_dssp ETTTTE-EEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEE-------------
T ss_pred ECCCCe-EEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEE-------------
Confidence 976543 222222 11236789999999999887754 899999988875321 11112445666
Q ss_pred ceeeecccccccceeEec-CCCeEEEe----eCCCceEEC
Q 012799 422 FYCVVDMSCCMSLYSWSA-DSRLLLSG----SKDSTLKVT 456 (456)
Q Consensus 422 ~~~~~~~~~~~~~~~~s~-dg~~l~s~----s~Dg~v~iW 456 (456)
+++| +++++++. ..++.|.+|
T Consensus 273 --------------~vdp~~g~lyva~~~~y~~~~~V~v~ 298 (328)
T 3dsm_A 273 --------------TVNPNNGEVYVADAIDYQQQGIVYRY 298 (328)
T ss_dssp --------------EECTTTCCEEEEECTTSSSEEEEEEE
T ss_pred --------------EEcCCCCeEEEEcccccccCCEEEEE
Confidence 7898 45555555 567777764
No 194
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.67 E-value=4.1e-13 Score=121.50 Aligned_cols=265 Identities=12% Similarity=-0.002 Sum_probs=175.1
Q ss_pred EECCCCCeEEEEEC--CC---cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe----------CCCeEEEEeC
Q 012799 115 AFSPDGRQLASGSG--DT---TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDP 179 (456)
Q Consensus 115 ~~s~~~~~l~~~~~--d~---~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~dg~i~vwd~ 179 (456)
...|+++++++... .. +|.++|..+++.+..+.....+ .++++|||++++++. .++.|.+||.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 34467776666543 22 7899999999988877754444 999999999999886 3678999999
Q ss_pred CCCCCccccccC------cccceEEEEecccccCCCCCEEEEEeC--CCcEEEEECCCCeEEEE-ecCcCccEEEEEeCC
Q 012799 180 QTGKPSGNPLSG------HKKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGG 250 (456)
Q Consensus 180 ~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~ 250 (456)
.+.+.......+ +......+.|+| +|++++++.. ++.|.++| .+++.+.. +... . ++.+.+
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-----DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~ 174 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTP-----NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHP 174 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECC-----CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEe
Confidence 887665432221 012345788888 9999998874 47899999 99988777 5432 2 234445
Q ss_pred CC--eEEEEeCCCcEEEEECCCCeEEEEeec-----CCcce-EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhh
Q 012799 251 DG--VIYTGSQDCTIKVWETTQGKLIRELKG-----HGHWV-NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322 (456)
Q Consensus 251 ~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (456)
++ .+++.+.||.+.++|. +++....... ...++ ....+.++
T Consensus 175 ~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~------------------------------ 223 (373)
T 2mad_H 175 GAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK------------------------------ 223 (373)
T ss_pred CCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec------------------------------
Confidence 44 6677888999999999 8776633221 11110 01111221
Q ss_pred hccCCCCCEEEEEeCCCcEEEEecCCCCCCc-cccc----------cccccEeEEEECCCCCEEEEEEC----------C
Q 012799 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPK-TRMT----------GHQQLVNHVYFSPDGQWVASASF----------D 381 (456)
Q Consensus 323 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~----------~~~~~v~~~~~sp~~~~l~s~~~----------d 381 (456)
+..++..+..+.+.+.|+....... ..+. ........++++|+++.++.+.. .
T Consensus 224 ------~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~ 297 (373)
T 2mad_H 224 ------SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAA 297 (373)
T ss_pred ------CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCC
Confidence 2223334467889998875432111 1110 01122445789999988777653 3
Q ss_pred CcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCC-eEEEee-CCCceEEC
Q 012799 382 KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGS-KDSTLKVT 456 (456)
Q Consensus 382 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~s~s-~Dg~v~iW 456 (456)
+.|.++|..+++.+..+... ....++ +|+|||+ .++++. .++.|.|+
T Consensus 298 ~~V~VID~~t~~vv~~i~~g-~~p~~i---------------------------~~s~Dg~~~l~v~~~~~~~V~Vi 346 (373)
T 2mad_H 298 KEVTSVTGLVGQTSSQISLG-HDVDAI---------------------------SVAQDGGPDLYALSAGTEVLHIY 346 (373)
T ss_pred CeEEEEECCCCEEEEEEECC-CCcCeE---------------------------EECCCCCeEEEEEcCCCCeEEEE
Confidence 57999999999998888633 346677 8999999 777777 48888764
No 195
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.65 E-value=7.9e-13 Score=125.69 Aligned_cols=257 Identities=16% Similarity=0.083 Sum_probs=176.0
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEECCCcEEEEeCC--CCcceeEEecCCCCEEEEEEc----CCCCEEEEEeC-CC
Q 012799 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN--TQTPMFKCTGHKNWVLCIAWS----ADGKHLVSGSK-AG 172 (456)
Q Consensus 100 ~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l~s~~~-dg 172 (456)
.+.++.. ...+..+.|+|||+++++++.|+.|.+||+. +.+.+.++... .....++|+ |||++++++.. ++
T Consensus 189 v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~ 266 (567)
T 1qks_A 189 IKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPP 266 (567)
T ss_dssp EEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETT
T ss_pred EEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCC
Confidence 3444443 3356789999999999999999999999995 77777777643 346899999 69998887765 58
Q ss_pred eEEEEeCCCCCCccccccC---------cc-----------------------cc----------------------eEE
Q 012799 173 ELQCWDPQTGKPSGNPLSG---------HK-----------------------KW----------------------ITG 198 (456)
Q Consensus 173 ~i~vwd~~~~~~~~~~~~~---------~~-----------------------~~----------------------v~~ 198 (456)
.|.++|..+.+.+...... |. +. ...
T Consensus 267 ~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d 346 (567)
T 1qks_A 267 QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHD 346 (567)
T ss_dssp EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEE
T ss_pred eEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccC
Confidence 9999998887654321110 00 01 112
Q ss_pred EEecccccCCCCCEEEEEe-CCCcEEEEECCCCeEEEEecC-----cCccEEEEEeCCCC-eEE-EEe-CCCcEEEEECC
Q 012799 199 ISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVICLSG-----HTLAVTCVKWGGDG-VIY-TGS-QDCTIKVWETT 269 (456)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~-~l~-~~~-~dg~i~iwd~~ 269 (456)
+.|+| ++++++++. .++.|.++|..+++.+..+.. |.+.-..+ ++|++ .++ ++. .++.|.++|..
T Consensus 347 ~~~~p-----dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~ 420 (567)
T 1qks_A 347 GGLDG-----SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTD 420 (567)
T ss_dssp EEECT-----TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECC
T ss_pred ceECC-----CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCC
Confidence 33444 888887665 578999999999987766643 32211122 57764 444 443 46899999998
Q ss_pred C-------CeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC-----
Q 012799 270 Q-------GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD----- 337 (456)
Q Consensus 270 ~-------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 337 (456)
+ .+.++++......-..+..+|+ +.++++...
T Consensus 421 ~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~------------------------------------~~~l~v~~~~~~~~ 464 (567)
T 1qks_A 421 PEGHPDNAWKILDSFPALGGGSLFIKTHPN------------------------------------SQYLYVDATLNPEA 464 (567)
T ss_dssp TTTCTTTBTSEEEEEECSCSCCCCEECCTT------------------------------------CSEEEEECTTCSSH
T ss_pred CCCCccccCEEEEEEecCCCCCEEEEeCCC------------------------------------CCeEEEecCCCCCc
Confidence 7 5677777755443344666776 455666552
Q ss_pred --CCcEEEEecCCC-----CCCccccc--------cccccEeEEEECCCCCEEEEEE-----CCCcEEEEeCCCCeEEEE
Q 012799 338 --DFTMFLWEPAVS-----KQPKTRMT--------GHQQLVNHVYFSPDGQWVASAS-----FDKSIKLWNGTTGKFVAV 397 (456)
Q Consensus 338 --dg~i~iwd~~~~-----~~~~~~~~--------~~~~~v~~~~~sp~~~~l~s~~-----~dg~i~iwd~~~~~~~~~ 397 (456)
...|.++|+.+. ......+. .....+..+.|+|+|+.+..+. .++.|.|+|.++++++..
T Consensus 465 ~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~ 544 (567)
T 1qks_A 465 EISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHV 544 (567)
T ss_dssp HHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred ccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEE
Confidence 458999998765 22212221 1235688999999999877653 379999999999999888
Q ss_pred Eec
Q 012799 398 FRG 400 (456)
Q Consensus 398 ~~~ 400 (456)
++.
T Consensus 545 i~~ 547 (567)
T 1qks_A 545 IKD 547 (567)
T ss_dssp ECC
T ss_pred eCC
Confidence 874
No 196
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.65 E-value=1.5e-14 Score=143.92 Aligned_cols=246 Identities=13% Similarity=0.049 Sum_probs=154.4
Q ss_pred CCCCCeEEEEECCCc---EEEEe--CC---CCcceeEE------ecCCCCEEEEEEcCCCCEEEEEeCC-----CeEEEE
Q 012799 117 SPDGRQLASGSGDTT---VRLWD--LN---TQTPMFKC------TGHKNWVLCIAWSADGKHLVSGSKA-----GELQCW 177 (456)
Q Consensus 117 s~~~~~l~~~~~d~~---v~vwd--~~---~~~~~~~~------~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~vw 177 (456)
+|+|++++....++. -.+|. .. .++....+ .+|...+..++|||||++|+.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 389998887664432 44554 43 33322221 1233468899999999999887654 369999
Q ss_pred eCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCc--------------EEEEECCCCe----EEEEecCc
Q 012799 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD--------------ARIWDVSLRK----CVICLSGH 239 (456)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~--------------i~iwd~~~~~----~~~~~~~~ 239 (456)
|+.+++.... ..+...+..++|+| + +.|+.++.++. |++|++.++. .+.....+
T Consensus 195 dl~tg~~~~~--~~~~~~~~~~~wsp-----D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~ 266 (741)
T 1yr2_A 195 GVADGKPLAD--ELKWVKFSGLAWLG-----N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPEL 266 (741)
T ss_dssp ETTTCCEEEE--EEEEEESCCCEEST-----T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTC
T ss_pred ECCCCCCCCc--cCCCceeccEEEEC-----C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCC
Confidence 9999886431 11122235678888 8 88888877654 8999997664 23222333
Q ss_pred CccEEEEEeCCCC-eEEEEeCC-----CcEEEEECCCC--eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChH
Q 012799 240 TLAVTCVKWGGDG-VIYTGSQD-----CTIKVWETTQG--KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE 311 (456)
Q Consensus 240 ~~~v~~~~~~~~~-~l~~~~~d-----g~i~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (456)
...+..+.|+|+| .++..+.+ ..|++||+.++ +....+..+........ +++
T Consensus 267 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~d------------------- 326 (741)
T 1yr2_A 267 PKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGV------------------- 326 (741)
T ss_dssp TTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEE-------------------
T ss_pred CeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ecc-------------------
Confidence 3468899999999 66665543 37999999876 31344444443333332 244
Q ss_pred HHHHHHHhhhhhccCCCCCEEEEEeC----CCcEEEEecCCCC-CCccccccccccEeEEEECCCCCEEEEEECCCcEEE
Q 012799 312 EMKKAALERYNKIKGNAPERLVSGSD----DFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL 386 (456)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~i 386 (456)
++.|+..+. ++.|.+||+.... .....+..+...+..++++ ++.++++...||..+|
T Consensus 327 -----------------g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 388 (741)
T 1yr2_A 327 -----------------GDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQV 388 (741)
T ss_dssp -----------------TTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEE
T ss_pred -----------------CCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 445666554 3459999976542 2333344555567778887 6677888888998777
Q ss_pred EeCC-CCeEEEEEec-ccccEEEE
Q 012799 387 WNGT-TGKFVAVFRG-HVGPVYQI 408 (456)
Q Consensus 387 wd~~-~~~~~~~~~~-~~~~v~~i 408 (456)
|.+. +++....+.. +.+.+..+
T Consensus 389 ~~~~~~g~~~~~l~~~~~~~v~~~ 412 (741)
T 1yr2_A 389 LAFDLDGKPAGAVSLPGIGSASGL 412 (741)
T ss_dssp EEEETTSCEEEECBCSSSCEEEEE
T ss_pred EEEeCCCCceeeccCCCCeEEEEe
Confidence 7544 4666666654 35567777
No 197
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.65 E-value=1.6e-14 Score=143.74 Aligned_cols=244 Identities=16% Similarity=0.073 Sum_probs=161.1
Q ss_pred CCcccEEEEEECCCCCeEEEEECC-----CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCe-------
Q 012799 106 GHTEAVLSVAFSPDGRQLASGSGD-----TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE------- 173 (456)
Q Consensus 106 ~h~~~V~~~~~s~~~~~l~~~~~d-----~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~------- 173 (456)
+|...+..++|||||++||.++.+ ..|++||+.+++.+... .+...+..++|+|| +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccc
Confidence 455578999999999999987643 36999999998865432 12222357899999 99998877654
Q ss_pred -------EEEEeCCCCCCcccc-c--cCcccceEEEEecccccCCCCCEEEEEeCCC-----cEEEEECCCC--eEEEEe
Q 012799 174 -------LQCWDPQTGKPSGNP-L--SGHKKWITGISWEPVHLNAPCRRFVSASKDG-----DARIWDVSLR--KCVICL 236 (456)
Q Consensus 174 -------i~vwd~~~~~~~~~~-~--~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~--~~~~~~ 236 (456)
|.+|++.++...... . ..+...+..+.|+| +|++++..+.++ .|++||+.++ ++...+
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-----DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l 312 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-----DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL 312 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-----TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE
T ss_pred cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-----CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEe
Confidence 899999776532111 2 22333588899999 999888877544 8999999876 313444
Q ss_pred cCcCccEEEEEeCCCC-eEEEEeC----CCcEEEEECCCC--eEEEEeecCCcceEEEEecCcceeeeccccCCCCccCC
Q 012799 237 SGHTLAVTCVKWGGDG-VIYTGSQ----DCTIKVWETTQG--KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSS 309 (456)
Q Consensus 237 ~~~~~~v~~~~~~~~~-~l~~~~~----dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (456)
..+...+....+ ++| .|+..+. ++.|.+||+.++ +....+..+...+..+.+. .
T Consensus 313 ~~~~~~~~~~~~-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~----------------- 373 (741)
T 1yr2_A 313 IPDLKAQWDFVD-GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-G----------------- 373 (741)
T ss_dssp ECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-B-----------------
T ss_pred cCCCCceEEEEe-ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-C-----------------
Confidence 444444444433 666 6666655 345999999874 3344444444455566655 2
Q ss_pred hHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccccc-ccccEeEEEECCCCCEEEEE----ECCCcE
Q 012799 310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQWVASA----SFDKSI 384 (456)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~s~----~~dg~i 384 (456)
+..+++...|+..++|.+.........+.. +...+..+.++|+++.|+.. ...+.|
T Consensus 374 -------------------~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i 434 (741)
T 1yr2_A 374 -------------------NRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATV 434 (741)
T ss_dssp -------------------TEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEE
T ss_pred -------------------CEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEE
Confidence 345788888988777765422233333333 35678899999998765532 234789
Q ss_pred EEEeCCCCeE
Q 012799 385 KLWNGTTGKF 394 (456)
Q Consensus 385 ~iwd~~~~~~ 394 (456)
++||+.+++.
T Consensus 435 ~~~d~~tg~~ 444 (741)
T 1yr2_A 435 LALDPATAKT 444 (741)
T ss_dssp EEEETTTTEE
T ss_pred EEEECCCCcE
Confidence 9999988773
No 198
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.65 E-value=7.8e-13 Score=116.46 Aligned_cols=236 Identities=12% Similarity=0.068 Sum_probs=158.9
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEEC
Q 012799 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV 227 (456)
Q Consensus 148 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 227 (456)
.+...+.++++.++|+++++...++.|.+||.. ++............+.++++.+ ++..+++...++.|..||.
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISS-----DGEVWFTENAANKIGRITK 85 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT-----TSCEEEEETTTTEEEEECT
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECC-----CCCEEEeCCCCCeEEEECC
Confidence 355679999999999977776668899999988 5543212223456788899887 7887777777889999998
Q ss_pred CCCeEEEEecCcCccEEEEEeCCCCeEEEE-eCCCcEEEEECCCCeEEEE-eecCCcceEEEEecCcceeeeccccCCCC
Q 012799 228 SLRKCVICLSGHTLAVTCVKWGGDGVIYTG-SQDCTIKVWETTQGKLIRE-LKGHGHWVNSLALSTEYALRTGAFDHTGK 305 (456)
Q Consensus 228 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 305 (456)
........+......+.++++++++.++.+ ..++.|..||. +++.... .......+..+++.++
T Consensus 86 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~------------- 151 (299)
T 2z2n_A 86 KGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSD------------- 151 (299)
T ss_dssp TSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT-------------
T ss_pred CCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCC-------------
Confidence 633222222334567899999998855444 45788999998 5544332 2223455777887776
Q ss_pred ccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEE
Q 012799 306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385 (456)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~ 385 (456)
+..+++...++.|..||. .+.........+...+..++++++|++.++...++.|.
T Consensus 152 -----------------------g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 207 (299)
T 2z2n_A 152 -----------------------NALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIG 207 (299)
T ss_dssp -----------------------SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred -----------------------CCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEE
Confidence 344666666789999996 33322111233445688999999999777766788999
Q ss_pred EEeCCCCeEEEE-EecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceEE
Q 012799 386 LWNGTTGKFVAV-FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 386 iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i 455 (456)
+||. +++.... ...+...+.++ +++++|+++++...++.|..
T Consensus 208 ~~~~-~g~~~~~~~~~~~~~~~~i---------------------------~~~~~g~l~v~~~~~~~i~~ 250 (299)
T 2z2n_A 208 RITT-SGEITEFKIPTPNARPHAI---------------------------TAGAGIDLWFTEWGANKIGR 250 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEE---------------------------EECSTTCEEEEETTTTEEEE
T ss_pred EECC-CCcEEEEECCCCCCCceeE---------------------------EECCCCCEEEeccCCceEEE
Confidence 9998 6664332 22234556677 67777776666545555554
No 199
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.65 E-value=4.3e-13 Score=127.52 Aligned_cols=258 Identities=13% Similarity=0.003 Sum_probs=176.4
Q ss_pred CCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCCCccccccCcccc
Q 012799 118 PDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ--TGKPSGNPLSGHKKW 195 (456)
Q Consensus 118 ~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~ 195 (456)
|.+.++++...+++|.++|..+++.+.++.. ...+..+.|+|||+++++++.|+.|.+||+. +++.+..... ...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G~~ 241 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--GSE 241 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--CSE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec--CCC
Confidence 4455667777889999999999998888864 3457799999999999999999999999996 6655543222 223
Q ss_pred eEEEEec----ccccCCCCCEEEEEeC-CCcEEEEECCCCeEEEEecCc-----------CccEEEEEeCCCC--eEEEE
Q 012799 196 ITGISWE----PVHLNAPCRRFVSASK-DGDARIWDVSLRKCVICLSGH-----------TLAVTCVKWGGDG--VIYTG 257 (456)
Q Consensus 196 v~~~~~~----~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~~~~~~~~--~l~~~ 257 (456)
...++|+ | +|++++++.. ++.|.++|..+.+.+..+... ...+..+..++++ .++..
T Consensus 242 P~~ia~s~~~~p-----DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~ 316 (567)
T 1qks_A 242 ARSIETSKMEGW-----EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 316 (567)
T ss_dssp EEEEEECCSTTC-----TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred CceeEEccccCC-----CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe
Confidence 5688888 6 8888877665 589999999999888776421 1257788888876 55556
Q ss_pred eCCCcEEEEECCCCeEEE--EeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE-
Q 012799 258 SQDCTIKVWETTQGKLIR--ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS- 334 (456)
Q Consensus 258 ~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 334 (456)
..+|.|.++|....+.+. .+. .......+.|+|+ ++++++
T Consensus 317 ~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pd------------------------------------gr~~~va 359 (567)
T 1qks_A 317 KETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGS------------------------------------HRYFITA 359 (567)
T ss_dssp TTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTT------------------------------------SCEEEEE
T ss_pred cCCCeEEEEecCCCccceeeeee-ccccccCceECCC------------------------------------CCEEEEE
Confidence 667999999998754322 222 2334556778777 444544
Q ss_pred EeCCCcEEEEecCCCCCCcccc----ccccccEeEEEECCCCCE-EEEEE-CCCcEEEEeCCC-------CeEEEEEecc
Q 012799 335 GSDDFTMFLWEPAVSKQPKTRM----TGHQQLVNHVYFSPDGQW-VASAS-FDKSIKLWNGTT-------GKFVAVFRGH 401 (456)
Q Consensus 335 ~~~dg~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~sp~~~~-l~s~~-~dg~i~iwd~~~-------~~~~~~~~~~ 401 (456)
...++.|.++|+.+.+...... ..|.+.-..+ ++|++.. .+++. .++.|.++|..+ .+.++++...
T Consensus 360 ~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~ 438 (567)
T 1qks_A 360 ANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL 438 (567)
T ss_dssp EGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred eCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC
Confidence 4568899999987654221111 1233211122 5887444 44543 468999999987 5566766654
Q ss_pred cccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEee
Q 012799 402 VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS 448 (456)
Q Consensus 402 ~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s 448 (456)
...-..+ ..+|++++|....
T Consensus 439 g~g~~~i---------------------------~~~p~~~~l~v~~ 458 (567)
T 1qks_A 439 GGGSLFI---------------------------KTHPNSQYLYVDA 458 (567)
T ss_dssp CSCCCCE---------------------------ECCTTCSEEEEEC
T ss_pred CCCCEEE---------------------------EeCCCCCeEEEec
Confidence 3221223 6689998887755
No 200
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.64 E-value=9.2e-14 Score=120.35 Aligned_cols=192 Identities=10% Similarity=0.011 Sum_probs=144.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCccccccCcc-cceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCc
Q 012799 161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK-KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH 239 (456)
Q Consensus 161 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 239 (456)
.+++|++++.++.|.+||.++|+.+.+ +..+. ..+.++.+.| +|+.++ +.++.|+.||. +++.+..+..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~-~~~~~~~~~~~~~~~p-----dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~ 74 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWE-YPLEKGWECNSVAATK-----AGEILF--SYSKGAKMITR-DGRELWNIAAP 74 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEE-EECCTTCCCCEEEECT-----TSCEEE--ECBSEEEEECT-TSCEEEEEECC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEE-eCCCccCCCcCeEECC-----CCCEEE--eCCCCEEEECC-CCCEEEEEcCC
Confidence 467899999999999999999988763 33333 4678888888 888888 45778999999 88888888764
Q ss_pred -CccEEEEEeCCCC-eEEEEeC-CCcEEEEECCCCeEEEEeecCC------cceEEEEecCcceeeeccccCCCCccCCh
Q 012799 240 -TLAVTCVKWGGDG-VIYTGSQ-DCTIKVWETTQGKLIRELKGHG------HWVNSLALSTEYALRTGAFDHTGKQYSSP 310 (456)
Q Consensus 240 -~~~v~~~~~~~~~-~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (456)
...+.++.+.++| .+++.+. ++.+..+|. +++.+..+.... .....++..+
T Consensus 75 ~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~------------------- 134 (276)
T 3no2_A 75 AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK------------------- 134 (276)
T ss_dssp TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-------------------
T ss_pred CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-------------------
Confidence 3578889999999 6666666 778888885 677777664211 1112222222
Q ss_pred HHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799 311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (456)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 390 (456)
+++++++...++.|..||.. ++ .+..+... ..+.++.+.++|+++++++.+++|..+|..
T Consensus 135 -----------------~G~~lv~~~~~~~v~~~d~~-G~-~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 135 -----------------KGNYLVPLFATSEVREIAPN-GQ-LLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp -----------------TSCEEEEETTTTEEEEECTT-SC-EEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred -----------------CCCEEEEecCCCEEEEECCC-CC-EEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence 37789999999999999965 44 34434332 345678889999999999988999999999
Q ss_pred CCeEEEEEecc
Q 012799 391 TGKFVAVFRGH 401 (456)
Q Consensus 391 ~~~~~~~~~~~ 401 (456)
+|+.+..+..+
T Consensus 195 tG~~~w~~~~~ 205 (276)
T 3no2_A 195 SNRIVRRVNAN 205 (276)
T ss_dssp TCCEEEEEEGG
T ss_pred CCcEEEEecCC
Confidence 99999988744
No 201
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.63 E-value=3e-13 Score=120.59 Aligned_cols=272 Identities=14% Similarity=0.048 Sum_probs=179.5
Q ss_pred EEECCCCCeEEEEEC-----CCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe----------CCCeEEEEe
Q 012799 114 VAFSPDGRQLASGSG-----DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWD 178 (456)
Q Consensus 114 ~~~s~~~~~l~~~~~-----d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~dg~i~vwd 178 (456)
....|+++.++.... ++.|.+.|..+++.+.++.....+ . ++++|||++++++. .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 455788888887765 679999999999999888765555 4 99999999888775 367899999
Q ss_pred CCCCCCccccccCc------ccceEEEEecccccCCCCCEEEEEeC--CCcEEEEECCCCeEEEEecCcCccEEEEEeCC
Q 012799 179 PQTGKPSGNPLSGH------KKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVICLSGHTLAVTCVKWGG 250 (456)
Q Consensus 179 ~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 250 (456)
..+++....+..+. ......+.++| +|++++++.. ++.|.++|+.+++.+.++.... . ....|
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-----DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~--~~~~P 186 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTP-----DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C--YHIFP 186 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECT-----TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcC-----CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c--ceeec
Confidence 99988765432221 12345678888 9999888864 6899999999999988885322 1 12224
Q ss_pred CC--eEEEEeCCCcEEEEECCC-CeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCC
Q 012799 251 DG--VIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327 (456)
Q Consensus 251 ~~--~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (456)
.+ .+++.+.||.+.+.++.+ ++........ +.++..... .. ......
T Consensus 187 ~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~--------~~~~~~~~~----------~~------------~~~~~~ 236 (386)
T 3sjl_D 187 TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV--------FHPEDEFLI----------NH------------PAYSQK 236 (386)
T ss_dssp EETTEEEEEETTSCEEEEECCSSSCCEEEECCC--------CSCTTSCBC----------SC------------CEEETT
T ss_pred CCCceeEEECCCCCEEEEECCCCCeEEEeecce--------ecccccccc----------cc------------ceeEcC
Confidence 33 677889999999999976 5543211100 011100000 00 000011
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCC-ccccc----------cccccEeEEEECCCCCEEEEEEC----------CCcEEE
Q 012799 328 APERLVSGSDDFTMFLWEPAVSKQP-KTRMT----------GHQQLVNHVYFSPDGQWVASASF----------DKSIKL 386 (456)
Q Consensus 328 ~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~----------~~~~~v~~~~~sp~~~~l~s~~~----------dg~i~i 386 (456)
++ .++..+.+|.+++.|....... ...+. -.......++++|+++.++.... .+.|.+
T Consensus 237 dG-~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~v 315 (386)
T 3sjl_D 237 AG-RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV 315 (386)
T ss_dssp TT-EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred CC-cEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEE
Confidence 23 3444666899999997654321 11110 01223345788999988877643 257999
Q ss_pred EeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCC-eEEEe-eCCCceEE
Q 012799 387 WNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSG-SKDSTLKV 455 (456)
Q Consensus 387 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~s~-s~Dg~v~i 455 (456)
+|+.+++.+..+... ..++++ ++++|++ +|+++ ..++.|.+
T Consensus 316 iD~~t~kv~~~i~vg-~~~~~l---------------------------avs~D~~~~ly~tn~~~~~VsV 358 (386)
T 3sjl_D 316 LDAKTGERLAKFEMG-HEIDSI---------------------------NVSQDEKPLLYALSTGDKTLYI 358 (386)
T ss_dssp EETTTCCEEEEEEEE-EEECEE---------------------------EECSSSSCEEEEEETTTTEEEE
T ss_pred EECCCCeEEEEEECC-CCcceE---------------------------EECCCCCeEEEEEcCCCCeEEE
Confidence 999999999888743 356777 8899997 66664 45787765
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.62 E-value=5e-13 Score=118.68 Aligned_cols=240 Identities=10% Similarity=0.112 Sum_probs=160.3
Q ss_pred CCcccEEEEEECCCCCeEEE-------EECCCcEEEEeCCCCcceeEEe----cCCCCEEEEEEcCC-CCEEEEEeCCCe
Q 012799 106 GHTEAVLSVAFSPDGRQLAS-------GSGDTTVRLWDLNTQTPMFKCT----GHKNWVLCIAWSAD-GKHLVSGSKAGE 173 (456)
Q Consensus 106 ~h~~~V~~~~~s~~~~~l~~-------~~~d~~v~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~s~~~dg~ 173 (456)
..-....+++|+++|+++++ +..++.|.+||..+++...... ++...+.+++++++ ++++++ +..+.
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~ 93 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLG 93 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTE
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCC
Confidence 34456689999999988877 5678899999987776543221 24567999999999 654444 44557
Q ss_pred EEEEeCCCCCCccc-cc---cCcccceEEEEecccccCCCCCEEEEEeCC---------------CcEEEEECCCCeEEE
Q 012799 174 LQCWDPQTGKPSGN-PL---SGHKKWITGISWEPVHLNAPCRRFVSASKD---------------GDARIWDVSLRKCVI 234 (456)
Q Consensus 174 i~vwd~~~~~~~~~-~~---~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~~~ 234 (456)
|.+||.+ ++.... .. ......+.++++.+ +++.+++...+ +.|..||.. ++...
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-----~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~ 166 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-----EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ 166 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-----TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-----CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE
Confidence 9999988 654321 10 11123578889888 78777776554 567777765 44333
Q ss_pred EecCcCccEEEEEeC----CCC-eEEEE-eCCCcEEEEECC-CCeE-----EEEeecCC-cceEEEEecCcceeeecccc
Q 012799 235 CLSGHTLAVTCVKWG----GDG-VIYTG-SQDCTIKVWETT-QGKL-----IRELKGHG-HWVNSLALSTEYALRTGAFD 301 (456)
Q Consensus 235 ~~~~~~~~v~~~~~~----~~~-~l~~~-~~dg~i~iwd~~-~~~~-----~~~~~~~~-~~i~~~~~~~~~~~~~~~~~ 301 (456)
.. .+......++++ +++ .++++ ..++.|.+||+. +++. ...+..+. .....++++++
T Consensus 167 ~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~--------- 236 (314)
T 1pjx_A 167 VD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED--------- 236 (314)
T ss_dssp EE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT---------
T ss_pred ec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCC---------
Confidence 22 233456788999 988 55555 467899999976 4442 22223222 44667777776
Q ss_pred CCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEE-EEEC
Q 012799 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA-SASF 380 (456)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-s~~~ 380 (456)
+..+++...++.|.+||..++. ....+..+...+.+++|+|+|+.|+ +...
T Consensus 237 ---------------------------G~l~v~~~~~~~i~~~d~~~g~-~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~ 288 (314)
T 1pjx_A 237 ---------------------------NNLLVANWGSSHIEVFGPDGGQ-PKMRIRCPFEKPSNLHFKPQTKTIFVTEHE 288 (314)
T ss_dssp ---------------------------CCEEEEEETTTEEEEECTTCBS-CSEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred ---------------------------CCEEEEEcCCCEEEEEcCCCCc-EeEEEeCCCCCceeEEECCCCCEEEEEeCC
Confidence 4556776778899999965443 2333444557799999999999554 4455
Q ss_pred CCcEEEEeCCC
Q 012799 381 DKSIKLWNGTT 391 (456)
Q Consensus 381 dg~i~iwd~~~ 391 (456)
++.|..|++..
T Consensus 289 ~~~l~~~~~~~ 299 (314)
T 1pjx_A 289 NNAVWKFEWQR 299 (314)
T ss_dssp TTEEEEEECSS
T ss_pred CCeEEEEeCCC
Confidence 67899999764
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.61 E-value=6.2e-13 Score=118.11 Aligned_cols=237 Identities=12% Similarity=0.125 Sum_probs=158.4
Q ss_pred ecCCCCEEEEEEcCCCCEEEE-------EeCCCeEEEEeCCCCCCccccc---cCcccceEEEEecccccCCC-CCEEEE
Q 012799 147 TGHKNWVLCIAWSADGKHLVS-------GSKAGELQCWDPQTGKPSGNPL---SGHKKWITGISWEPVHLNAP-CRRFVS 215 (456)
Q Consensus 147 ~~~~~~v~~~~~~~~~~~l~s-------~~~dg~i~vwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~-~~~l~~ 215 (456)
...-....+++|+++++++++ +..++.|.+||..+++...... .++...+.++.+.+ + +. +..
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-----~~g~-l~v 87 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-----DANQ-LFV 87 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-----SSSE-EEE
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-----CCCc-EEE
Confidence 334456789999999988777 5778899999988776532111 12456788899887 6 54 444
Q ss_pred EeCCCcEEEEECCCCeEEEE-ecC----cCccEEEEEeCCCCeEEEEe-CC---------------CcEEEEECCCCeEE
Q 012799 216 ASKDGDARIWDVSLRKCVIC-LSG----HTLAVTCVKWGGDGVIYTGS-QD---------------CTIKVWETTQGKLI 274 (456)
Q Consensus 216 ~~~dg~i~iwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~l~~~~-~d---------------g~i~iwd~~~~~~~ 274 (456)
++..+.|.+||.. ++.... ... ....+.+++++++|.++.++ .+ +.|..||.. ++..
T Consensus 88 ~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~ 165 (314)
T 1pjx_A 88 ADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI 165 (314)
T ss_dssp EETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE
T ss_pred EECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE
Confidence 5445579999988 665433 221 12457899999999554444 33 567788766 5543
Q ss_pred EEeecCCcceEEEEec----CcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE-EEEeCCCcEEEEecCCC
Q 012799 275 RELKGHGHWVNSLALS----TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VSGSDDFTMFLWEPAVS 349 (456)
Q Consensus 275 ~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~ 349 (456)
.... .......++++ +++ +.+ ++...++.|.+||+...
T Consensus 166 ~~~~-~~~~~~~i~~~~~~d~dg------------------------------------~~l~v~~~~~~~i~~~~~~~~ 208 (314)
T 1pjx_A 166 QVDT-AFQFPNGIAVRHMNDGRP------------------------------------YQLIVAETPTKKLWSYDIKGP 208 (314)
T ss_dssp EEEE-EESSEEEEEEEECTTSCE------------------------------------EEEEEEETTTTEEEEEEEEET
T ss_pred Eecc-CCCCcceEEEecccCCCC------------------------------------CEEEEEECCCCeEEEEECCCC
Confidence 3222 22345677777 663 234 44456789999996522
Q ss_pred CC-----Ccccccccc-ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCce
Q 012799 350 KQ-----PKTRMTGHQ-QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY 423 (456)
Q Consensus 350 ~~-----~~~~~~~~~-~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~ 423 (456)
.. ....+..+. ..+..++++++|+++++...++.|.+||..+++.+..+..+...+.++
T Consensus 209 g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i--------------- 273 (314)
T 1pjx_A 209 AKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNL--------------- 273 (314)
T ss_dssp TEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEE---------------
T ss_pred CccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeE---------------
Confidence 11 112223333 567889999999988888888999999998788777777676778888
Q ss_pred eeecccccccceeEecCCCeEE-EeeCCCceEE
Q 012799 424 CVVDMSCCMSLYSWSADSRLLL-SGSKDSTLKV 455 (456)
Q Consensus 424 ~~~~~~~~~~~~~~s~dg~~l~-s~s~Dg~v~i 455 (456)
+|+++|+.|. +...++.|..
T Consensus 274 ------------~~~~dg~~l~v~~~~~~~l~~ 294 (314)
T 1pjx_A 274 ------------HFKPQTKTIFVTEHENNAVWK 294 (314)
T ss_dssp ------------EECTTSSEEEEEETTTTEEEE
T ss_pred ------------EECCCCCEEEEEeCCCCeEEE
Confidence 8899999554 4445566654
No 204
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.59 E-value=2.4e-13 Score=121.19 Aligned_cols=251 Identities=13% Similarity=0.084 Sum_probs=163.6
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEE----------CCCcEEEEeCCCCcceeEEecCC-------CCEEEEEEcCCCCE
Q 012799 102 ATIAGHTEAVLSVAFSPDGRQLASGS----------GDTTVRLWDLNTQTPMFKCTGHK-------NWVLCIAWSADGKH 164 (456)
Q Consensus 102 ~~l~~h~~~V~~~~~s~~~~~l~~~~----------~d~~v~vwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~ 164 (456)
.++.....+ . ++++|||++++++. .++.|.+||..+.+.+.++.-.. .....++|+|||++
T Consensus 73 ~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~ 150 (386)
T 3sjl_D 73 GMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKT 150 (386)
T ss_dssp EEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSE
T ss_pred EEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCE
Confidence 333333344 4 99999999887765 35789999999999888775321 24667999999999
Q ss_pred EEEEeC--CCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC-CeEEEEecCcC-
Q 012799 165 LVSGSK--AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICLSGHT- 240 (456)
Q Consensus 165 l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~- 240 (456)
++++.. ++.|.++|+.+++.+..+.... . ...+ |. ....+++.+.||.+.+.++.. ++.......+.
T Consensus 151 lyVan~~~~~~VsVID~~t~~vv~tI~v~g---~-~~~~-P~----g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~ 221 (386)
T 3sjl_D 151 LLFYQFSPAPAVGVVDLEGKAFKRMLDVPD---C-YHIF-PT----APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH 221 (386)
T ss_dssp EEEEECSSSCEEEEEETTTTEEEEEEECCS---E-EEEE-EE----ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS
T ss_pred EEEEEcCCCCeEEEEECCCCcEEEEEECCC---c-ceee-cC----CCceeEEECCCCCEEEEECCCCCeEEEeecceec
Confidence 998864 6899999999998765432211 1 1122 31 345777888899999999876 55433221111
Q ss_pred ---ccEE-EEEe-CCCCeEEEEeCCCcEEEEECCCCe--EEEEeec----------CCcceEEEEecCcceeeeccccCC
Q 012799 241 ---LAVT-CVKW-GGDGVIYTGSQDCTIKVWETTQGK--LIRELKG----------HGHWVNSLALSTEYALRTGAFDHT 303 (456)
Q Consensus 241 ---~~v~-~~~~-~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~----------~~~~i~~~~~~~~~~~~~~~~~~~ 303 (456)
.++. ...| .++|.++..+.+|.|++.|+.++. ....+.. .......++++++
T Consensus 222 ~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~----------- 290 (386)
T 3sjl_D 222 PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA----------- 290 (386)
T ss_dssp CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETT-----------
T ss_pred cccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCC-----------
Confidence 1221 1344 367765557778999999997654 2222210 0112223444544
Q ss_pred CCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC----------CCcEEEEecCCCCCCccccccccccEeEEEECCCCC
Q 012799 304 GKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD----------DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ 373 (456)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 373 (456)
+++++.... .+.|.++|+.+.+.......+ ..+..+++++|++
T Consensus 291 -------------------------~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~~ 343 (386)
T 3sjl_D 291 -------------------------LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEK 343 (386)
T ss_dssp -------------------------TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECSSSS
T ss_pred -------------------------CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEECCCCC
Confidence 344554432 257999998776544443333 3588999999997
Q ss_pred -EEEEE-ECCCcEEEEeCCCCeEEEEEecc
Q 012799 374 -WVASA-SFDKSIKLWNGTTGKFVAVFRGH 401 (456)
Q Consensus 374 -~l~s~-~~dg~i~iwd~~~~~~~~~~~~~ 401 (456)
+|++. ..++.|.++|..+++.+.++...
T Consensus 344 ~~ly~tn~~~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 344 PLLYALSTGDKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp CEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred eEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence 66665 45899999999999999888743
No 205
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.58 E-value=2.5e-12 Score=118.04 Aligned_cols=231 Identities=11% Similarity=0.069 Sum_probs=158.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC--cEEEEECC
Q 012799 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG--DARIWDVS 228 (456)
Q Consensus 151 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~ 228 (456)
.....|+|+++++++++...++.|++||..++.... .... ..... ++|++ +++.++++..++ .|.+++..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~-~~~~-~~~~~-ia~~~-----~g~~l~~~d~~~~~~I~~~d~~ 202 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT-VHPG-FKGGK-PAVTK-----DKQRVYSIGWEGTHTVYVYMKA 202 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE-EEET-CCBCB-CEECT-----TSSEEEEEBSSTTCEEEEEEGG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE-eecc-CCCCc-eeEec-----CCCcEEEEecCCCceEEEEEcC
Confidence 468899999999977777778999999998776543 2222 22223 78888 888888888766 79999887
Q ss_pred CCeEEEEe----cCcCccEEEEEeCC-CCeEEEEeCCCcEEEEECCCCeEEEE----eecCCcce--EEEEecCcceeee
Q 012799 229 LRKCVICL----SGHTLAVTCVKWGG-DGVIYTGSQDCTIKVWETTQGKLIRE----LKGHGHWV--NSLALSTEYALRT 297 (456)
Q Consensus 229 ~~~~~~~~----~~~~~~v~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~i--~~~~~~~~~~~~~ 297 (456)
.+.....+ ......+.+++++| ++.|+++..++.|+.||..++..... ..+....- ..++++|+.
T Consensus 203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~---- 278 (409)
T 3hrp_A 203 SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVD---- 278 (409)
T ss_dssp GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTT----
T ss_pred CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCC----
Confidence 65443333 22456678899999 56777777889999999987753322 11111111 278888741
Q ss_pred ccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc---------------ccc
Q 012799 298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH---------------QQL 362 (456)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------------~~~ 362 (456)
+..+++...++.|+.|+.... ...+.++ -..
T Consensus 279 -------------------------------g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~ 324 (409)
T 3hrp_A 279 -------------------------------SNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQ 324 (409)
T ss_dssp -------------------------------TEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSS
T ss_pred -------------------------------CEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCC
Confidence 344666677888999985432 2222222 134
Q ss_pred EeEEEECCCCCEEEEEE-CCCcEEEEeCCCCeEEEEEeccc---------------ccEEEEEeeeeeeecCCCCceeee
Q 012799 363 VNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVFRGHV---------------GPVYQIRFELIYCFRYPSNFYCVV 426 (456)
Q Consensus 363 v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~---------------~~v~~i~~~~~~~~~~~~~~~~~~ 426 (456)
...++++|+|+++++-+ .+++|+.|+..+++. ..+.++. .....+
T Consensus 325 P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~gi------------------ 385 (409)
T 3hrp_A 325 PNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDI------------------ 385 (409)
T ss_dssp EEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEE------------------
T ss_pred CeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEE------------------
Confidence 78999999999877777 789999999888864 3444331 123333
Q ss_pred cccccccceeEecCCCeEEEeeCCCceEE
Q 012799 427 DMSCCMSLYSWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 427 ~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i 455 (456)
+++++|.++++-..+++|+.
T Consensus 386 ---------avd~~g~lyVad~~n~~Ir~ 405 (409)
T 3hrp_A 386 ---------CYDGEGGYWIAEAWGKAIRK 405 (409)
T ss_dssp ---------EECSSSEEEEEESTTCEEEE
T ss_pred ---------EEcCCCCEEEEECCCCeEEE
Confidence 88999888888888888764
No 206
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.57 E-value=1e-11 Score=112.32 Aligned_cols=238 Identities=11% Similarity=-0.002 Sum_probs=153.9
Q ss_pred EEEECCCCCeEEEEE----------CCCcEEEEeCCCCcceeEEecC-------CCCEEEEEEcCCCCEEEEEeC--CCe
Q 012799 113 SVAFSPDGRQLASGS----------GDTTVRLWDLNTQTPMFKCTGH-------KNWVLCIAWSADGKHLVSGSK--AGE 173 (456)
Q Consensus 113 ~~~~s~~~~~l~~~~----------~d~~v~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~--dg~ 173 (456)
.++++|||++++.+. .++.|.+||..+.+.+..+.-. ......++|+|||++|+++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999998885 3678999999988877766422 133568999999999998874 478
Q ss_pred EEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec-----CcCccE-EEEE
Q 012799 174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-----GHTLAV-TCVK 247 (456)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v-~~~~ 247 (456)
|.++| .+++....... .... +.+.|. ....+++.+.||.+.++|. +++...... ....++ ....
T Consensus 150 v~viD-~t~~~~~~~i~-~~~~---~~~~~~----~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~ 219 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLS-SPTC---YHIHPG----APSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPA 219 (373)
T ss_pred EEEEE-CCCCEEeEEcC-CCce---EEEEeC----CCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecce
Confidence 99999 88876543011 1111 233331 2346677788999999999 776653321 111121 2234
Q ss_pred eCCCC-eEEEEeCCCcEEEEECCCCe--EEEEeecCCcc----------eEEEEecCcceeeeccccCCCCccCChHHHH
Q 012799 248 WGGDG-VIYTGSQDCTIKVWETTQGK--LIRELKGHGHW----------VNSLALSTEYALRTGAFDHTGKQYSSPEEMK 314 (456)
Q Consensus 248 ~~~~~-~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~----------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (456)
+.+++ .++..+..+.+.+.|+..+. .+..+...... ...+.++++
T Consensus 220 ~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d---------------------- 277 (373)
T 2mad_H 220 QANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKS---------------------- 277 (373)
T ss_pred eEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCC----------------------
Confidence 45544 44444477899999997653 22322211111 122334443
Q ss_pred HHHHhhhhhccCCCCCEEEEEeC----------CCcEEEEecCCCCCCccccccccccEeEEEECCCCC-EEEEEE-CCC
Q 012799 315 KAALERYNKIKGNAPERLVSGSD----------DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASAS-FDK 382 (456)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~-~dg 382 (456)
+..++.+.. ++.|.++|..+.+.... +. -......++|+|||+ +++++. .++
T Consensus 278 --------------~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~-i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~ 341 (373)
T 2mad_H 278 --------------SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQ-IS-LGHDVDAISVAQDGGPDLYALSAGTE 341 (373)
T ss_pred --------------CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEE-EE-CCCCcCeEEECCCCCeEEEEEcCCCC
Confidence 444555432 35799999766543333 32 223578999999999 677776 589
Q ss_pred cEEEEeCCCCeEEEEE
Q 012799 383 SIKLWNGTTGKFVAVF 398 (456)
Q Consensus 383 ~i~iwd~~~~~~~~~~ 398 (456)
.|.+||..+++.+..+
T Consensus 342 ~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 342 VLHIYDAGAGDQDQST 357 (373)
T ss_pred eEEEEECCCCCEEeee
Confidence 9999999999998874
No 207
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.56 E-value=1.7e-13 Score=122.77 Aligned_cols=170 Identities=11% Similarity=0.088 Sum_probs=134.1
Q ss_pred cEEEEEECCCCCeEEEEECCCcEEEEeCCCCc-----------ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 012799 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-----------PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 178 (456)
+++.+++++...++++|+.++ +++|+++... +... ..+.. |+.++| ++++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999999999999885 6779865322 1122 24666 999999 99999998 889999999
Q ss_pred CCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEe
Q 012799 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGS 258 (456)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 258 (456)
+.+..... ....|...+.++.+.+ ..+++++.||.+.+||+.++.... +...|+|++|+|+| ++.|.
T Consensus 113 v~sl~~~~-~~~~~~~~v~~i~~~~-------p~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG-~~vg~ 179 (388)
T 1xip_A 113 LEELSEFR-TVTSFEKPVFQLKNVN-------NTLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ-LAVLL 179 (388)
T ss_dssp SSSTTCEE-EEEECSSCEEEEEECS-------SEEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE-EEEEE
T ss_pred chhhhccC-ccceeecceeeEEecC-------CCEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc-eEEEE
Confidence 98766332 4556667788777655 238899999999999999877643 45689999999999 77899
Q ss_pred CCCcEEEEECCCCeE--EEEe------e---cCCcceEEEEecCcceeeec
Q 012799 259 QDCTIKVWETTQGKL--IREL------K---GHGHWVNSLALSTEYALRTG 298 (456)
Q Consensus 259 ~dg~i~iwd~~~~~~--~~~~------~---~~~~~i~~~~~~~~~~~~~~ 298 (456)
.||.+++|+...++. ..++ . +|...|.++.|.+++.+...
T Consensus 180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 999999999888775 5556 2 36788999999998776543
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.55 E-value=8.4e-12 Score=109.72 Aligned_cols=214 Identities=10% Similarity=0.040 Sum_probs=144.3
Q ss_pred cCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEE
Q 012799 148 GHKNWVLCIAWSADG-KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD 226 (456)
Q Consensus 148 ~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 226 (456)
.+..-..+..|++++ .++++...++.|..||..+++... ......+.++++.+ ++++++ +. ++.|.+||
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---~~~~~~~~~i~~~~-----dG~l~v-~~-~~~l~~~d 79 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR---VTMDAPVSSVALRQ-----SGGYVA-TI-GTKFCALN 79 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE---EECSSCEEEEEEBT-----TSSEEE-EE-TTEEEEEE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE---EeCCCceEEEEECC-----CCCEEE-EE-CCeEEEEE
Confidence 344456788999954 455666678899999998776422 22346788999988 888544 44 56899999
Q ss_pred CCCCeEEEEecC----cCccEEEEEeCCCCeEEEEeC------------CCcEEEEECCCCeEEEEeecCCcceEEEEec
Q 012799 227 VSLRKCVICLSG----HTLAVTCVKWGGDGVIYTGSQ------------DCTIKVWETTQGKLIRELKGHGHWVNSLALS 290 (456)
Q Consensus 227 ~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~~~~~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~ 290 (456)
..+++....... ....+.+++++++|.++.++. .+.|..+|.. ++... +.......+.++++
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~s 157 (297)
T 3g4e_A 80 WKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWS 157 (297)
T ss_dssp TTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEEC
T ss_pred CCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEc
Confidence 988765433321 234588999999995555442 2344444443 33322 32233446788888
Q ss_pred CcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecC-CCCCC-----ccccccccccEe
Q 012799 291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA-VSKQP-----KTRMTGHQQLVN 364 (456)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~-----~~~~~~~~~~v~ 364 (456)
|++. ..+++.+.++.|.+||+. ..... ...+..+...+.
T Consensus 158 pdg~-----------------------------------~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~ 202 (297)
T 3g4e_A 158 LDHK-----------------------------------IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPD 202 (297)
T ss_dssp TTSC-----------------------------------EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEE
T ss_pred CCCC-----------------------------------EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCC
Confidence 8732 124566668899999864 22211 112223345678
Q ss_pred EEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799 365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408 (456)
Q Consensus 365 ~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 408 (456)
.++++++|++.++....+.|..||..+|+.+..+..+...++++
T Consensus 203 g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~ 246 (297)
T 3g4e_A 203 GMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSC 246 (297)
T ss_dssp EEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEE
T ss_pred eeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEE
Confidence 99999999988888788899999999999999998887788888
No 209
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.55 E-value=1.3e-12 Score=118.73 Aligned_cols=263 Identities=15% Similarity=0.068 Sum_probs=175.2
Q ss_pred CCCCeEEEEEC-C----CcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCC
Q 012799 118 PDGRQLASGSG-D----TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDPQTG 182 (456)
Q Consensus 118 ~~~~~l~~~~~-d----~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~dg~i~vwd~~~~ 182 (456)
++++.+++... + +.|.++|..+++.+.++..-..+ .++++||+++++++. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 46666665544 2 69999999999999988755555 899999999888876 3678999999998
Q ss_pred CCccccccC------cccceEEEEecccccCCCCCEEEEEeC--CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC--
Q 012799 183 KPSGNPLSG------HKKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-- 252 (456)
Q Consensus 183 ~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-- 252 (456)
+....+..+ .......+.++| +|++++++.. ++.|.+.|+.+++.+..+.-... ....|++
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~sp-----DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~ 230 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTP-----DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPT 230 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECT-----TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETT
T ss_pred cEEEEEECCCccccccCCCcceEEEcC-----CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCc
Confidence 876543221 012234567777 9999998874 57899999999998887753221 2233333
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEee----cCCcce-EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCC
Q 012799 253 VIYTGSQDCTIKVWETTQGKLIRELK----GHGHWV-NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327 (456)
Q Consensus 253 ~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (456)
.+++.+.||.+.+.+..+++...... ....++ ..+.+.+
T Consensus 231 ~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~------------------------------------ 274 (426)
T 3c75_H 231 VFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSL------------------------------------ 274 (426)
T ss_dssp EEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECT------------------------------------
T ss_pred EEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecC------------------------------------
Confidence 67778889999988886665543211 000000 0111222
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCCc----ccc-------ccccccEeEEEECCCCCEEEEEEC----------CCcEEE
Q 012799 328 APERLVSGSDDFTMFLWEPAVSKQPK----TRM-------TGHQQLVNHVYFSPDGQWVASASF----------DKSIKL 386 (456)
Q Consensus 328 ~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~-------~~~~~~v~~~~~sp~~~~l~s~~~----------dg~i~i 386 (456)
++..++..+..+.+.+.|........ ... .........++++|+++.+++... ++.|.+
T Consensus 275 dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsV 354 (426)
T 3c75_H 275 RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVV 354 (426)
T ss_dssp TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred CCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEE
Confidence 24556666778899999975432110 000 001111223689999887776542 357999
Q ss_pred EeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCC-eEEEee-CCCceEE
Q 012799 387 WNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGS-KDSTLKV 455 (456)
Q Consensus 387 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~s~s-~Dg~v~i 455 (456)
+|..+++.+..+.... ....+ +|+|||+ +++++. .++.|.|
T Consensus 355 ID~~T~kvv~~I~vg~-~P~gi---------------------------a~spDg~~~lyv~n~~s~~VsV 397 (426)
T 3c75_H 355 LNAETGERINKIELGH-EIDSI---------------------------NVSQDAEPLLYALSAGTQTLHI 397 (426)
T ss_dssp EETTTCCEEEEEEEEE-EECEE---------------------------EECCSSSCEEEEEETTTTEEEE
T ss_pred EECCCCeEEEEEECCC-CcCeE---------------------------EEccCCCEEEEEEcCCCCeEEE
Confidence 9999999998886432 35666 8899999 888887 4888866
No 210
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.55 E-value=2.5e-11 Score=106.78 Aligned_cols=214 Identities=12% Similarity=0.056 Sum_probs=144.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC
Q 012799 149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228 (456)
Q Consensus 149 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 228 (456)
....+.++++.++|+..++...++.|.+||.. ++............+.++++.+ ++..+++...++.|..||..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~v~~~d~~ 91 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSS-----LGDIWFTENGANKIGKLSKK 91 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-----TSCEEEEETTTTEEEEECTT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECC-----CCCEEEEecCCCeEEEECCC
Confidence 45678999999999988877778999999987 5543212223345688888887 78877776667899999988
Q ss_pred CCeEE-EEecCcCccEEEEEeCCCCeEEEEe-CCCcEEEEECCCCeEEEE-eecCCcceEEEEecCcceeeeccccCCCC
Q 012799 229 LRKCV-ICLSGHTLAVTCVKWGGDGVIYTGS-QDCTIKVWETTQGKLIRE-LKGHGHWVNSLALSTEYALRTGAFDHTGK 305 (456)
Q Consensus 229 ~~~~~-~~~~~~~~~v~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 305 (456)
++.. .........+.++++.+++.++.+. .++.|..||.. ++.... +......+..+++.++
T Consensus 92 -g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~------------- 156 (300)
T 2qc5_A 92 -GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSD------------- 156 (300)
T ss_dssp -SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT-------------
T ss_pred -CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCC-------------
Confidence 5443 2233344678999999988555444 47889999987 554422 2323455777777776
Q ss_pred ccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEE
Q 012799 306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385 (456)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~ 385 (456)
+..+++...++.|..||. .+.........+...+..++++++|++.++....+.|.
T Consensus 157 -----------------------g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 212 (300)
T 2qc5_A 157 -----------------------NALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIG 212 (300)
T ss_dssp -----------------------SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred -----------------------CCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEE
Confidence 444555556788999986 33222222223345688999999998777766677899
Q ss_pred EEeCCCCeEEEE-EecccccEEEE
Q 012799 386 LWNGTTGKFVAV-FRGHVGPVYQI 408 (456)
Q Consensus 386 iwd~~~~~~~~~-~~~~~~~v~~i 408 (456)
+||. +++.... +..+...+.++
T Consensus 213 ~~~~-~g~~~~~~~~~~~~~~~~i 235 (300)
T 2qc5_A 213 RITT-TGEISEYDIPTPNARPHAI 235 (300)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEE
T ss_pred EEcC-CCcEEEEECCCCCCCceEE
Confidence 9998 5554332 22334456666
No 211
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.54 E-value=4.1e-12 Score=116.63 Aligned_cols=235 Identities=11% Similarity=0.090 Sum_probs=159.3
Q ss_pred cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCCCc
Q 012799 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG--ELQCWDPQTGKPS 185 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~ 185 (456)
-.....++|+++++++++...++.|++||..++........ ..... ++|+++++.|+++..++ .|.+++...+...
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 34688999999999878777788999999987766554443 33334 99999999999988866 7888888765432
Q ss_pred ccc--c-cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEE----ecCcCccE--EEEEeCCC-Ce-E
Q 012799 186 GNP--L-SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC----LSGHTLAV--TCVKWGGD-GV-I 254 (456)
Q Consensus 186 ~~~--~-~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~v--~~~~~~~~-~~-l 254 (456)
... . ......+.+++++| ++..|+++..++.|+.||..++..... ..++...- ..++|+|+ +. +
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p-----~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly 282 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDE-----TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFY 282 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECT-----TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred EEeeeccchhcCCcEEEEEeC-----CCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence 111 0 21345567788877 556666677788999999987754332 22222222 38999994 64 4
Q ss_pred EEEeCCCcEEEEECCCCeEEEEeecCC---------------cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHh
Q 012799 255 YTGSQDCTIKVWETTQGKLIRELKGHG---------------HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319 (456)
Q Consensus 255 ~~~~~dg~i~iwd~~~~~~~~~~~~~~---------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (456)
++-..++.|+.|+.... +..+.++. .....++++++
T Consensus 283 v~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d--------------------------- 333 (409)
T 3hrp_A 283 MSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDED--------------------------- 333 (409)
T ss_dssp EEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT---------------------------
T ss_pred EEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC---------------------------
Confidence 45556788999997643 33332221 23556666665
Q ss_pred hhhhccCCCCCEEEEEe-CCCcEEEEecCCCCCCccccccc---------------cccEeEEEECCCCCEEEEEECCCc
Q 012799 320 RYNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQPKTRMTGH---------------QQLVNHVYFSPDGQWVASASFDKS 383 (456)
Q Consensus 320 ~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~---------------~~~v~~~~~sp~~~~l~s~~~dg~ 383 (456)
++.+++-. .++.|+.||+..+. +..+.++ -.....++++++|.++++-..+++
T Consensus 334 ---------G~lyvad~~~~~~I~~~~~~~G~--v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~ 402 (409)
T 3hrp_A 334 ---------GNFYIVDGFKGYCLRKLDILDGY--VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKA 402 (409)
T ss_dssp ---------CCEEEEETTTTCEEEEEETTTTE--EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCE
T ss_pred ---------CCEEEEeCCCCCEEEEEECCCCE--EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCe
Confidence 45577777 78899999954432 2222222 245889999999888888888888
Q ss_pred EEEEeC
Q 012799 384 IKLWNG 389 (456)
Q Consensus 384 i~iwd~ 389 (456)
|+.+++
T Consensus 403 Ir~i~~ 408 (409)
T 3hrp_A 403 IRKYAV 408 (409)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 888765
No 212
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.49 E-value=2.3e-12 Score=127.05 Aligned_cols=242 Identities=13% Similarity=0.095 Sum_probs=155.0
Q ss_pred CCcccEEEEEECCCCCeEEEEE-----CCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCC--------
Q 012799 106 GHTEAVLSVAFSPDGRQLASGS-----GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG-------- 172 (456)
Q Consensus 106 ~h~~~V~~~~~s~~~~~l~~~~-----~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-------- 172 (456)
+|...+..++|||||++||.+. .+..|++||+.+++.+.... +......++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 4677899999999999998543 23579999999988654311 11113568899 999999988774
Q ss_pred -----eEEEEeCCCCCCccccc---cC-cccceEEEEecccccCCCCCEEEEEeC----CCcEEEEECCCCe-EEEEecC
Q 012799 173 -----ELQCWDPQTGKPSGNPL---SG-HKKWITGISWEPVHLNAPCRRFVSASK----DGDARIWDVSLRK-CVICLSG 238 (456)
Q Consensus 173 -----~i~vwd~~~~~~~~~~~---~~-~~~~v~~~~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~~~~ 238 (456)
.|.+|++.++......+ .. |......+.|+| +|++++.... ++.|+++|+.++. ....+..
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-----Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~ 278 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-----DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG 278 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-----TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-----CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC
Confidence 39999998765422112 22 344577889998 8888865433 3589999997763 3344444
Q ss_pred cCccEEEEEeCCCC-eE-EEEeCC---CcEEEEECCCCeE--EEEeecCCcceEEEEecCcceeeeccccCCCCccCChH
Q 012799 239 HTLAVTCVKWGGDG-VI-YTGSQD---CTIKVWETTQGKL--IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE 311 (456)
Q Consensus 239 ~~~~v~~~~~~~~~-~l-~~~~~d---g~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (456)
+....... +++++ .| +....+ +.|..+|+.++.. ...+..+...+. .++++
T Consensus 279 ~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~------------------- 336 (693)
T 3iuj_A 279 DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSG------------------- 336 (693)
T ss_dssp SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEE-------------------
T ss_pred CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEE-------------------
Confidence 44444444 44444 44 444333 5799999987654 234444444443 56655
Q ss_pred HHHHHHHhhhhhccCCCCCEEEEEe-CCC--cEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECC----CcE
Q 012799 312 EMKKAALERYNKIKGNAPERLVSGS-DDF--TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD----KSI 384 (456)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d----g~i 384 (456)
++.|+... .++ .|++||+... ............+..+.++++++.|+....+ +.+
T Consensus 337 -----------------g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l 398 (693)
T 3iuj_A 337 -----------------SGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTL 398 (693)
T ss_dssp -----------------TTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEE
T ss_pred -----------------CCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEE
Confidence 34455444 444 6888886532 2222222344567788888888876655444 789
Q ss_pred EEEeCCCCeE
Q 012799 385 KLWNGTTGKF 394 (456)
Q Consensus 385 ~iwd~~~~~~ 394 (456)
..||+.+++.
T Consensus 399 ~~~d~~~g~~ 408 (693)
T 3iuj_A 399 YRFEPKSGAI 408 (693)
T ss_dssp EEECTTTCCE
T ss_pred EEEECCCCeE
Confidence 9999988764
No 213
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.48 E-value=2.7e-12 Score=115.37 Aligned_cols=260 Identities=14% Similarity=0.121 Sum_probs=164.0
Q ss_pred ccEEEEEECCCCCeEEEEE--CCCcEEEEeCCCCcceeEE-------ecCCCCEEEEEEcCCCCEEEEEeC-----CCeE
Q 012799 109 EAVLSVAFSPDGRQLASGS--GDTTVRLWDLNTQTPMFKC-------TGHKNWVLCIAWSADGKHLVSGSK-----AGEL 174 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~--~d~~v~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~s~~~-----dg~i 174 (456)
..+..++++|+|+++++.. .++.++||.+.+++ +..+ ..+...+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6789999999999888864 23435555554443 2222 134568999999999876665433 5789
Q ss_pred EEEeCCCCCCccccc-----cCcccceEEEEecccccCCCCCEE-EEEe---CCCcEEEEECCCCeEEEEecCcCccEE-
Q 012799 175 QCWDPQTGKPSGNPL-----SGHKKWITGISWEPVHLNAPCRRF-VSAS---KDGDARIWDVSLRKCVICLSGHTLAVT- 244 (456)
Q Consensus 175 ~vwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~l-~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~- 244 (456)
.+||+.+++...... ..+...+..+++.+ ++..+ ++.. .++.|.+||+.+++....+.+|.....
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~-----~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~ 170 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDL-----IHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPE 170 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEET-----TTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCC
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEec-----CCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccc
Confidence 999999887433211 12234567888876 43444 5544 578999999998887776655422110
Q ss_pred EEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhh
Q 012799 245 CVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK 323 (456)
Q Consensus 245 ~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (456)
...+..+| .+.+...+|.+..|. ..+..++++|+
T Consensus 171 ~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~d------------------------------- 205 (343)
T 2qe8_A 171 DIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAE------------------------------- 205 (343)
T ss_dssp SCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTT-------------------------------
T ss_pred ccceeECCEEEEeccCCCceecee--------------cccceeEeccC-------------------------------
Confidence 02233355 455566777765553 12567899987
Q ss_pred ccCCCCCEEEEEeCCC-cEEEEecC---CCCCC----cc--ccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCe
Q 012799 324 IKGNAPERLVSGSDDF-TMFLWEPA---VSKQP----KT--RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK 393 (456)
Q Consensus 324 ~~~~~~~~l~~~~~dg-~i~iwd~~---~~~~~----~~--~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~ 393 (456)
++.++.+..++ .++.++.. ..... .. ...++......++++++|+++++...++.|.+||..+|+
T Consensus 206 -----g~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~ 280 (343)
T 2qe8_A 206 -----NEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA 280 (343)
T ss_dssp -----SCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred -----CCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC
Confidence 44466666555 55555532 11100 00 111334456779999999999998889999999986676
Q ss_pred EEEEEecc-cccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCC
Q 012799 394 FVAVFRGH-VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS 451 (456)
Q Consensus 394 ~~~~~~~~-~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg 451 (456)
........ .....++ +|.++|+++++.+..+
T Consensus 281 ~~~~~~~~~~~~p~~v---------------------------a~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 281 YKLLVTDEKLSWTDSF---------------------------NFGSDGYLYFDCNQLH 312 (343)
T ss_dssp EEEEEECGGGSCEEEE---------------------------EECTTSCEEEEECCGG
T ss_pred EEEEEECCceecCCee---------------------------EECCCCcEEEEeCccc
Confidence 54333322 3446677 8889988888776543
No 214
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.48 E-value=9.5e-13 Score=117.92 Aligned_cols=158 Identities=13% Similarity=0.039 Sum_probs=117.4
Q ss_pred ceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe-----------EEEEecCcCccEEEEEeCCCC-eEEEEeCCCc
Q 012799 195 WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-----------CVICLSGHTLAVTCVKWGGDG-VIYTGSQDCT 262 (456)
Q Consensus 195 ~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~ 262 (456)
.+..+++++ ....+++|+.++ +.+|++...+ ..... .+.. |+.++| ++ .|+++ .++.
T Consensus 39 ~~nlLais~-----~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~ 107 (388)
T 1xip_A 39 SLQNLDISN-----SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNA 107 (388)
T ss_dssp CCBCEEEET-----TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSE
T ss_pred cccEEEEcC-----CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCc
Confidence 577888888 778999999875 6669865322 11122 2455 999999 55 77777 8899
Q ss_pred EEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEE
Q 012799 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF 342 (456)
Q Consensus 263 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 342 (456)
|++||+++.........+...+.++.+.+. .+++++.||.+.
T Consensus 108 l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--------------------------------------~~av~~~dG~L~ 149 (388)
T 1xip_A 108 LYSLDLEELSEFRTVTSFEKPVFQLKNVNN--------------------------------------TLVILNSVNDLS 149 (388)
T ss_dssp EEEEESSSTTCEEEEEECSSCEEEEEECSS--------------------------------------EEEEEETTSEEE
T ss_pred EEEEEchhhhccCccceeecceeeEEecCC--------------------------------------CEEEEECCCCEE
Confidence 999999877665566666666776655432 288889999999
Q ss_pred EEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeE--EEEE------e---cccccEEEE
Q 012799 343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF--VAVF------R---GHVGPVYQI 408 (456)
Q Consensus 343 iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~--~~~~------~---~~~~~v~~i 408 (456)
+||+...... .+...|++++|||+| ++.|..||.+++|+...++. ..++ . +|...|.++
T Consensus 150 v~dl~~~~~~-----~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI 219 (388)
T 1xip_A 150 ALDLRTKSTK-----QLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSV 219 (388)
T ss_dssp EEETTTCCEE-----EEEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEE
T ss_pred EEEccCCccc-----cccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEE
Confidence 9998755432 245689999999999 67899999999999877775 5556 2 367788888
No 215
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.46 E-value=1.7e-10 Score=102.69 Aligned_cols=207 Identities=10% Similarity=0.015 Sum_probs=137.8
Q ss_pred CEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC
Q 012799 152 WVLCIAWSADG-KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR 230 (456)
Q Consensus 152 ~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 230 (456)
......|+|++ .++++...++.|..||..+++... . .....+.++.|.+ +++++++ +.+ .|.+||..++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--~-~~~~~v~~i~~~~-----dg~l~v~-~~~-gl~~~d~~~g 119 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--H-ALPFMGSALAKIS-----DSKQLIA-SDD-GLFLRDTATG 119 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--E-ECSSCEEEEEEEE-----TTEEEEE-ETT-EEEEEETTTC
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--E-ECCCcceEEEEeC-----CCeEEEE-ECC-CEEEEECCCC
Confidence 35678899975 455666678899999998775432 1 1245788999988 7776665 444 4999999887
Q ss_pred eEEEEecC----cCccEEEEEeCCCCeEEEEeC-------CCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeecc
Q 012799 231 KCVICLSG----HTLAVTCVKWGGDGVIYTGSQ-------DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299 (456)
Q Consensus 231 ~~~~~~~~----~~~~v~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 299 (456)
+....... ....+.+++++++|.++.++. .+.|..++ +++... +.........++++++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~d------- 189 (326)
T 2ghs_A 120 VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPD------- 189 (326)
T ss_dssp CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTT-------
T ss_pred cEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCC-------
Confidence 75433221 124688999999995555443 24566666 454433 2222334567888887
Q ss_pred ccCCCCccCChHHHHHHHHhhhhhccCCCCCEE-EEEeCCCcEEEEecC--CC-CC----CccccccccccEeEEEECCC
Q 012799 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VSGSDDFTMFLWEPA--VS-KQ----PKTRMTGHQQLVNHVYFSPD 371 (456)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~--~~-~~----~~~~~~~~~~~v~~~~~sp~ 371 (456)
++.+ ++.+.++.|.+||+. .+ .. ....+......+..++++++
T Consensus 190 -----------------------------g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~ 240 (326)
T 2ghs_A 190 -----------------------------GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE 240 (326)
T ss_dssp -----------------------------SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT
T ss_pred -----------------------------CCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCC
Confidence 3334 445567899999975 33 11 11112223455788999999
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799 372 GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408 (456)
Q Consensus 372 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 408 (456)
|++.++...++.|.+||. +++.+..+..+...+.++
T Consensus 241 G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~ 276 (326)
T 2ghs_A 241 GHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCP 276 (326)
T ss_dssp SCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred CCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEE
Confidence 998777777789999998 688878887777778888
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.45 E-value=1e-10 Score=102.71 Aligned_cols=228 Identities=11% Similarity=0.100 Sum_probs=145.6
Q ss_pred CcccEEEEEECCCC-CeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCc
Q 012799 107 HTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185 (456)
Q Consensus 107 h~~~V~~~~~s~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 185 (456)
+..--.+..|+|++ .++++...++.|+.||..+++. ..+. ....+.+++++++|+++++ . ++.|.+||.++++..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAV 86 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEE
Confidence 44455688999954 5566666788999999987654 3332 4578999999999995554 4 568999999877643
Q ss_pred ccccc---CcccceEEEEecccccCCCCCEEEEEeCC---------CcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-
Q 012799 186 GNPLS---GHKKWITGISWEPVHLNAPCRRFVSASKD---------GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG- 252 (456)
Q Consensus 186 ~~~~~---~~~~~v~~~~~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~- 252 (456)
..... .....+..+++.| +|+++++...+ ..-.+|.+........+.........++|+|++
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~-----dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~ 161 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDP-----AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHK 161 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECT-----TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSC
T ss_pred EEEecCCCCCCCCCCCEEECC-----CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCC
Confidence 21111 1124477888888 88866654221 233455443222222232334456889999998
Q ss_pred eE-EEEeCCCcEEEEEC--CCCeEE-----EEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhc
Q 012799 253 VI-YTGSQDCTIKVWET--TQGKLI-----RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324 (456)
Q Consensus 253 ~l-~~~~~dg~i~iwd~--~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (456)
.+ ++.+.++.|..||+ .++... ..+.........+++.++
T Consensus 162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~-------------------------------- 209 (297)
T 3g4e_A 162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAE-------------------------------- 209 (297)
T ss_dssp EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTT--------------------------------
T ss_pred EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCC--------------------------------
Confidence 45 44556789999987 455432 222223345667777766
Q ss_pred cCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEEC-CCCCEEEEEEC
Q 012799 325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS-PDGQWVASASF 380 (456)
Q Consensus 325 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~s~~~ 380 (456)
++..++....+.|..||..+++ ....+..+...+++++|. |+++.|+.++.
T Consensus 210 ----G~lwva~~~~~~v~~~d~~tG~-~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 210 ----GKLWVACYNGGRVIRLDPVTGK-RLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp ----SCEEEEEETTTEEEEECTTTCC-EEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred ----CCEEEEEcCCCEEEEEcCCCce-EEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 4446666677889999965443 444455555679999998 88877665543
No 217
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.44 E-value=2.5e-11 Score=107.13 Aligned_cols=236 Identities=12% Similarity=0.120 Sum_probs=154.3
Q ss_pred cceeEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC
Q 012799 141 TPMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD 219 (456)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d 219 (456)
..+..+...........|+|+++ ++++...++.|..|+. +++.. .+..+...+..+.+.+ +|+.+++...+
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~--~~~~~~~~~~gl~~d~-----dG~l~v~~~~~ 106 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD--VLLDATAFTNGNAVDA-----QQRLVHCEHGR 106 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE--EEEESCSCEEEEEECT-----TSCEEEEETTT
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE--EEeCCCCccceeeECC-----CCCEEEEECCC
Confidence 34445555666788999999998 5667777899999998 44422 3334556688899988 88866665566
Q ss_pred CcEEEEECCCCeEEEEec---C-cCccEEEEEeCCCCeEEE-----EeC-------------CCcEEEEECCCCeEEEEe
Q 012799 220 GDARIWDVSLRKCVICLS---G-HTLAVTCVKWGGDGVIYT-----GSQ-------------DCTIKVWETTQGKLIREL 277 (456)
Q Consensus 220 g~i~iwd~~~~~~~~~~~---~-~~~~v~~~~~~~~~~l~~-----~~~-------------dg~i~iwd~~~~~~~~~~ 277 (456)
+.|..|+.. ++...... + ....+.+++++++|.++. |.. .+.|..||..+++.....
T Consensus 107 ~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~ 185 (305)
T 3dr2_A 107 RAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA 185 (305)
T ss_dssp TEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE
T ss_pred CEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe
Confidence 889999986 54322221 1 113466799999995554 332 256888887666544332
Q ss_pred ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC------CcEEEEecCCCCC
Q 012799 278 KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD------FTMFLWEPAVSKQ 351 (456)
Q Consensus 278 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~ 351 (456)
.......++++|+ +..++.+... +.|.+|++....
T Consensus 186 --~~~~p~gl~~spd------------------------------------g~~lyv~~~~~~~~~~~~i~~~~~~~~~- 226 (305)
T 3dr2_A 186 --DLDHPNGLAFSPD------------------------------------EQTLYVSQTPEQGHGSVEITAFAWRDGA- 226 (305)
T ss_dssp --EESSEEEEEECTT------------------------------------SSEEEEEECCC---CCCEEEEEEEETTE-
T ss_pred --cCCCCcceEEcCC------------------------------------CCEEEEEecCCcCCCCCEEEEEEecCCC-
Confidence 3334577888887 4445555544 689999875432
Q ss_pred Cc--cc-cccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecc
Q 012799 352 PK--TR-MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDM 428 (456)
Q Consensus 352 ~~--~~-~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~ 428 (456)
.. .. .......+..++++++|++.++ +.+ .|.+|+. +++.+..+..+. .+.++
T Consensus 227 l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~-------------------- 282 (305)
T 3dr2_A 227 LHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS-DGQLLGHIPTPG-TASNC-------------------- 282 (305)
T ss_dssp EEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECT-TSCEEEEEECSS-CCCEE--------------------
T ss_pred ccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEECC-CCCEEEEEECCC-ceeEE--------------------
Confidence 10 00 1112234567899999995444 444 4999997 677777776554 46666
Q ss_pred cccccceeEecCCCeEEEeeCCCceEE
Q 012799 429 SCCMSLYSWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 429 ~~~~~~~~~s~dg~~l~s~s~Dg~v~i 455 (456)
+|+++++.|..++.++..++
T Consensus 283 -------~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 283 -------TFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp -------EECTTSCEEEEEETTEEEEE
T ss_pred -------EEeCCCCEEEEEcCCeEEEE
Confidence 78899998888887766554
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.44 E-value=4.6e-11 Score=105.46 Aligned_cols=228 Identities=10% Similarity=0.010 Sum_probs=147.3
Q ss_pred cccCCcccEEEEEECCCCC-eEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 012799 103 TIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (456)
Q Consensus 103 ~l~~h~~~V~~~~~s~~~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 181 (456)
.+..+........|+|+|+ ++++...++.|..|+.. ++ ...+..+...+..++++++|+++++...++.|.+|+.+
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~- 115 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD- 115 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence 3445566778899999998 56666678899999974 44 44555567789999999999976665566889999986
Q ss_pred CCCcccccc---C-cccceEEEEecccccCCCCCEEEE----EeC-------------CCcEEEEECCCCeEEEEecCcC
Q 012799 182 GKPSGNPLS---G-HKKWITGISWEPVHLNAPCRRFVS----ASK-------------DGDARIWDVSLRKCVICLSGHT 240 (456)
Q Consensus 182 ~~~~~~~~~---~-~~~~v~~~~~~~~~~~~~~~~l~~----~~~-------------dg~i~iwd~~~~~~~~~~~~~~ 240 (456)
++... ... + ....+..+.+.+ +|+.+++ |.. .+.|..||..+++..... ..
T Consensus 116 g~~~~-~~~~~~~~~~~~~~~i~~d~-----dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~ 187 (305)
T 3dr2_A 116 GQAHL-LVGRYAGKRLNSPNDLIVAR-----DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DL 187 (305)
T ss_dssp SCEEE-EECEETTEECSCCCCEEECT-----TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EE
T ss_pred CCEEE-EEeccCCCccCCCCCEEECC-----CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cC
Confidence 44321 111 1 112356788887 8887776 332 256788887666544333 34
Q ss_pred ccEEEEEeCCCC-eEEEEeCC------CcEEEEECCCCeEEEE---ee-cCCcceEEEEecCcceeeeccccCCCCccCC
Q 012799 241 LAVTCVKWGGDG-VIYTGSQD------CTIKVWETTQGKLIRE---LK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSS 309 (456)
Q Consensus 241 ~~v~~~~~~~~~-~l~~~~~d------g~i~iwd~~~~~~~~~---~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (456)
.....++|+|++ .|+++... +.|..|++..+. +.. +. ........+++.++
T Consensus 188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~----------------- 249 (305)
T 3dr2_A 188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRG----------------- 249 (305)
T ss_dssp SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTT-----------------
T ss_pred CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCC-----------------
Confidence 456789999999 67776665 689999987654 211 11 01112233444443
Q ss_pred hHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCc
Q 012799 310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKS 383 (456)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~ 383 (456)
++ +++++.+ .|.+|+.. + .....+..+. .+.+++|+|+++.|+.++.++.
T Consensus 250 -------------------G~-lwv~~~~-gv~~~~~~-g-~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 250 -------------------GW-LWSSSGT-GVCVFDSD-G-QLLGHIPTPG-TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp -------------------SC-EEECCSS-EEEEECTT-S-CEEEEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred -------------------CC-EEEecCC-cEEEECCC-C-CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence 44 5555544 49999963 3 2333333333 5889999999988888877653
No 219
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.43 E-value=2.9e-11 Score=110.25 Aligned_cols=261 Identities=12% Similarity=0.058 Sum_probs=165.1
Q ss_pred CCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEE
Q 012799 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITG 198 (456)
Q Consensus 119 ~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 198 (456)
++..++.++.++.|..+|..+++.+............... .+..++.++.++.|..+|.++|+........ ..+..
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~--~~~~~ 177 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLD--MPSLS 177 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECC--C----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCC--CCcee
Confidence 3556778889999999999999988776644322222222 2457888889999999999999865422111 11110
Q ss_pred E--EecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCcc----EE---EEEeC---CCCeEEEEeCCCcEEEE
Q 012799 199 I--SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA----VT---CVKWG---GDGVIYTGSQDCTIKVW 266 (456)
Q Consensus 199 ~--~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----v~---~~~~~---~~~~l~~~~~dg~i~iw 266 (456)
. ...|.. .+..+++++.++.+..+|..+++.+......... +. .+... .++.+++++.++.+..+
T Consensus 178 ~~~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~ 254 (376)
T 3q7m_A 178 LRGESAPTT---AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTAL 254 (376)
T ss_dssp -CCCCCCEE---ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEE
T ss_pred ecCCCCcEE---ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEE
Confidence 0 001111 2357888888999999999999887766432110 00 01111 14578888899999999
Q ss_pred ECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEec
Q 012799 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP 346 (456)
Q Consensus 267 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 346 (456)
|..+++.+...... ....+... +..++.++.++.+..+|.
T Consensus 255 d~~tG~~~w~~~~~--~~~~~~~~--------------------------------------~~~l~~~~~~g~l~~~d~ 294 (376)
T 3q7m_A 255 DLRSGQIMWKRELG--SVNDFIVD--------------------------------------GNRIYLVDQNDRVMALTI 294 (376)
T ss_dssp ETTTCCEEEEECCC--CEEEEEEE--------------------------------------TTEEEEEETTCCEEEEET
T ss_pred ECCCCcEEeeccCC--CCCCceEE--------------------------------------CCEEEEEcCCCeEEEEEC
Confidence 99999887665422 12222222 445888889999999998
Q ss_pred CCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeee
Q 012799 347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV 426 (456)
Q Consensus 347 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~ 426 (456)
.+++............+..... .+..|+.++.+|.+.++|..+|+.+.........+...
T Consensus 295 ~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~------------------ 354 (376)
T 3q7m_A 295 DGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTE------------------ 354 (376)
T ss_dssp TTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSC------------------
T ss_pred CCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeC------------------
Confidence 7765433222111122222233 25678888899999999999999988776533333221
Q ss_pred cccccccceeEecCCCeEEEeeCCCceEEC
Q 012799 427 DMSCCMSLYSWSADSRLLLSGSKDSTLKVT 456 (456)
Q Consensus 427 ~~~~~~~~~~~s~dg~~l~s~s~Dg~v~iW 456 (456)
. ...+..|+.++.||.|+.+
T Consensus 355 ---------~-~~~~~~l~v~~~~G~l~~~ 374 (376)
T 3q7m_A 355 ---------P-VAADGKLLIQAKDGTVYSI 374 (376)
T ss_dssp ---------C-EEETTEEEEEBTTSCEEEE
T ss_pred ---------C-EEECCEEEEEeCCCEEEEE
Confidence 1 1124678888899988764
No 220
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.43 E-value=2.4e-11 Score=110.43 Aligned_cols=239 Identities=13% Similarity=0.056 Sum_probs=157.9
Q ss_pred EEEECCCCCeEEEEE----------CCCcEEEEeCCCCcceeEEecC-------CCCEEEEEEcCCCCEEEEEeC--CCe
Q 012799 113 SVAFSPDGRQLASGS----------GDTTVRLWDLNTQTPMFKCTGH-------KNWVLCIAWSADGKHLVSGSK--AGE 173 (456)
Q Consensus 113 ~~~~s~~~~~l~~~~----------~d~~v~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~--dg~ 173 (456)
.++++|||++|+++. .++.|.++|..+.+.+..+.-. ......+.|+|||++++++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 799999999888775 3678999999999988776521 234567899999999999874 578
Q ss_pred EEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEE----ecCcCccE-EEEEe
Q 012799 174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC----LSGHTLAV-TCVKW 248 (456)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~v-~~~~~ 248 (456)
|.+.|+.+++.+..+..+.. ....|. ....+++.+.||.+.+.+..+++.... +.....++ ..+.+
T Consensus 202 VsVID~~t~kvv~~I~v~g~-----~~~~p~----g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~ 272 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDC-----YHIFPA----SPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAF 272 (426)
T ss_dssp EEEEETTTTEEEEEEECCSE-----EEEEEE----ETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEE
T ss_pred EEEEECCCCeEEEEEEcCCc-----eeeccC----CCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeee
Confidence 99999999887653322111 122231 225667777888888888866554432 11111111 13456
Q ss_pred CCCC-eEEEEeCCCcEEEEECCCCeEEE--Eeec---C-------CcceEEEEecCcceeeeccccCCCCccCChHHHHH
Q 012799 249 GGDG-VIYTGSQDCTIKVWETTQGKLIR--ELKG---H-------GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK 315 (456)
Q Consensus 249 ~~~~-~l~~~~~dg~i~iwd~~~~~~~~--~~~~---~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (456)
.+++ .++.....+.+.+.|+..+.... .+.. . ......++++++
T Consensus 273 ~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~d----------------------- 329 (426)
T 3c75_H 273 SLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQ----------------------- 329 (426)
T ss_dssp CTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGG-----------------------
T ss_pred cCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCC-----------------------
Confidence 7777 66666778899999987654221 1110 0 011112456665
Q ss_pred HHHhhhhhccCCCCCEEEEEeC----------CCcEEEEecCCCCCCccccccccccEeEEEECCCCC-EEEEEE-CCCc
Q 012799 316 AALERYNKIKGNAPERLVSGSD----------DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASAS-FDKS 383 (456)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~-~dg~ 383 (456)
+.++++... ++.|.++|..+.+.......+ .....++|+|||+ ++++.. .++.
T Consensus 330 -------------g~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s~~ 394 (426)
T 3c75_H 330 -------------SDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGTQT 394 (426)
T ss_dssp -------------GTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTE
T ss_pred -------------CCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCCCe
Confidence 333444331 357999997766543332222 2488999999999 888887 5899
Q ss_pred EEEEeCCCCeEEEEE
Q 012799 384 IKLWNGTTGKFVAVF 398 (456)
Q Consensus 384 i~iwd~~~~~~~~~~ 398 (456)
|.++|+.+++.+.++
T Consensus 395 VsVID~~t~kvv~tI 409 (426)
T 3c75_H 395 LHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEETTTCCEEEEE
T ss_pred EEEEECCCCCEEEEe
Confidence 999999999999887
No 221
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.42 E-value=2.1e-10 Score=102.18 Aligned_cols=222 Identities=12% Similarity=0.011 Sum_probs=141.9
Q ss_pred cEEEEEECCCC-CeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799 110 AVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (456)
Q Consensus 110 ~V~~~~~s~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 188 (456)
-..+.+|+|++ .++++...++.|..||..+++.. .+. ....+.+++|+++|+++++. .+ .|.+||..+++.....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 35678999975 45566667789999999876533 333 45679999999999877754 44 5999999887643211
Q ss_pred cc---CcccceEEEEecccccCCCCCEEEEEeC------CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE-
Q 012799 189 LS---GHKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG- 257 (456)
Q Consensus 189 ~~---~~~~~v~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~- 257 (456)
.. .....+.++.++| +|+.+++... .+.|..++ +++... +.........++|++++ .++.+
T Consensus 126 ~~~~~~~~~~~~~i~~d~-----~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHP-----SGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp CSSTTCTTEEEEEEEECT-----TSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEE
T ss_pred eCCCCCCCCCCCCEEECC-----CCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEE
Confidence 11 1124578889988 8876665432 24566666 454332 22233456789999998 55444
Q ss_pred eCCCcEEEEECC--CC-e-----EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCC
Q 012799 258 SQDCTIKVWETT--QG-K-----LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (456)
Q Consensus 258 ~~dg~i~iwd~~--~~-~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (456)
+.++.|.+||+. ++ + ....+.........+++.++ +
T Consensus 198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~------------------------------------G 241 (326)
T 2ghs_A 198 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE------------------------------------G 241 (326)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT------------------------------------S
T ss_pred CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCC------------------------------------C
Confidence 457899999986 55 2 12222222334456666655 4
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEEC-CCCCEEEEEECC
Q 012799 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS-PDGQWVASASFD 381 (456)
Q Consensus 330 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~s~~~d 381 (456)
.+.++...++.|..||. .+ .....+..+...+++++|+ |+++.|+.++..
T Consensus 242 ~lwva~~~~~~v~~~d~-~g-~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 242 HIWNARWGEGAVDRYDT-DG-NHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp CEEEEEETTTEEEEECT-TC-CEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred CEEEEEeCCCEEEEECC-CC-CEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 44555556788999996 33 3334444555679999998 888776555433
No 222
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.40 E-value=2.4e-11 Score=119.03 Aligned_cols=280 Identities=13% Similarity=0.103 Sum_probs=170.0
Q ss_pred CCeEEEEECCCcEEEEeCCCCcceeEEecCCCC----------E-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW----------V-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (456)
Q Consensus 120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 188 (456)
+..+++++.++.|..+|..+++.+.++...... + ..++. .+..+++++.|+.|..+|.++|+.+...
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 556777778899999999999998887543221 0 11222 4568888999999999999999876533
Q ss_pred ccC-cccceEEEEecccccCCCCCEEEEEe------CCCcEEEEECCCCeEEEEecCcC---------------------
Q 012799 189 LSG-HKKWITGISWEPVHLNAPCRRFVSAS------KDGDARIWDVSLRKCVICLSGHT--------------------- 240 (456)
Q Consensus 189 ~~~-~~~~v~~~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~--------------------- 240 (456)
... +......+...|.. .+..+++++ .+|.|+.||..+++.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v---~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 224 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRV---VNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG 224 (689)
T ss_dssp ECCSCTTSCCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred cCcCCCCCCccccCCcEE---ECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence 222 11111111112211 123455543 36899999999999887764210
Q ss_pred ----------ccEEEEEeCCCC-eEEEEeCCCc-------------------EEEEECCCCeEEEEeecCCcceEEEEec
Q 012799 241 ----------LAVTCVKWGGDG-VIYTGSQDCT-------------------IKVWETTQGKLIRELKGHGHWVNSLALS 290 (456)
Q Consensus 241 ----------~~v~~~~~~~~~-~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~i~~~~~~ 290 (456)
.....+++++++ .++.+..++. |..+|.++|+.+..++............
T Consensus 225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~ 304 (689)
T 1yiq_A 225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTAT 304 (689)
T ss_dssp STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCC
T ss_pred ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCC
Confidence 001246777765 8888877763 9999999999988876432211110000
Q ss_pred CcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc-----------
Q 012799 291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH----------- 359 (456)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------- 359 (456)
....+.....+ +.....++.++.+|.++++|..+++.........
T Consensus 305 ~~~~l~d~~~~------------------------G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~ 360 (689)
T 1yiq_A 305 QHMILAELPID------------------------GKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT 360 (689)
T ss_dssp SCEEEEEEEET------------------------TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred CCcEEEeeccC------------------------CcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence 00000000000 0001258889999999999977665431100000
Q ss_pred ----------------cc-----------cEeEEEECCCCCEEEEEEC--------------------------------
Q 012799 360 ----------------QQ-----------LVNHVYFSPDGQWVASASF-------------------------------- 380 (456)
Q Consensus 360 ----------------~~-----------~v~~~~~sp~~~~l~s~~~-------------------------------- 380 (456)
.. .-..++|+|+..++++...
T Consensus 361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p 440 (689)
T 1yiq_A 361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP 440 (689)
T ss_dssp TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence 00 0123788998888776532
Q ss_pred -------------CCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEe
Q 012799 381 -------------DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG 447 (456)
Q Consensus 381 -------------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~ 447 (456)
+|.|..||+.+|+.+..+..+.. ...- .++..+.+++.|
T Consensus 441 ~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g---------------------------~~~tagglvf~g 492 (689)
T 1yiq_A 441 EGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGG---------------------------TLSTAGNLVFEG 492 (689)
T ss_dssp SSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCC---------------------------EEEETTTEEEEE
T ss_pred cccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCc---------------------------cceECCCEEEEE
Confidence 37799999999998888765432 2222 456678888889
Q ss_pred eCCCceEEC
Q 012799 448 SKDSTLKVT 456 (456)
Q Consensus 448 s~Dg~v~iW 456 (456)
+.||.++.|
T Consensus 493 t~dg~l~a~ 501 (689)
T 1yiq_A 493 SADGRVIAY 501 (689)
T ss_dssp CTTSEEEEE
T ss_pred CCCCcEEEE
Confidence 999998875
No 223
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.37 E-value=1.8e-11 Score=109.35 Aligned_cols=262 Identities=15% Similarity=0.087 Sum_probs=163.6
Q ss_pred CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 012799 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (456)
Q Consensus 107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 186 (456)
+...+.++...++|.++ .++.+ +..+|. +++.+..+...........+. +..++.++.++.+..+|.. ++...
T Consensus 58 ~~~~~~~~~~~~~g~l~-v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~ 130 (330)
T 3hxj_A 58 GEIIECRPSIGKDGTIY-FGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKW 130 (330)
T ss_dssp GGEEEECCEETTTTEEC-CSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEE
T ss_pred CCCcccceEEecCCcEE-EecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEE
Confidence 34556778888777644 44444 888886 555554443333222333333 5567888889999999988 65433
Q ss_pred ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEE
Q 012799 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVW 266 (456)
Q Consensus 187 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iw 266 (456)
. .......+.++...+ ++ .+..++.++.|..+|.. ++....+......+.++...+++.+++++ +.|..+
T Consensus 131 ~-~~~~~~~~~~~~~~~-----~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~ 200 (330)
T 3hxj_A 131 R-FKTKKAIYATPIVSE-----DG-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAI 200 (330)
T ss_dssp E-EECSSCCCSCCEECT-----TS-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEE
T ss_pred E-EcCCCceeeeeEEcC-----CC-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEE
Confidence 2 222222333333332 44 47778888999999998 77776666555667777787788777777 889999
Q ss_pred ECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEec
Q 012799 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP 346 (456)
Q Consensus 267 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 346 (456)
| .+++...........+.++...++ ..++.++.++.+..+|.
T Consensus 201 d-~~g~~~~~~~~~~~~~~~~~~~~~-------------------------------------g~l~v~t~~~gl~~~~~ 242 (330)
T 3hxj_A 201 N-PDGTEKWNFYAGYWTVTRPAISED-------------------------------------GTIYVTSLDGHLYAINP 242 (330)
T ss_dssp C-TTSCEEEEECCSSCCCSCCEECTT-------------------------------------SCEEEEETTTEEEEECT
T ss_pred C-CCCcEEEEEccCCcceeceEECCC-------------------------------------CeEEEEcCCCeEEEECC
Confidence 9 777777666544444555555443 23777888888888873
Q ss_pred CCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeee
Q 012799 347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV 426 (456)
Q Consensus 347 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~ 426 (456)
.+.. ..........+..+.+.+++. |..++.+|.+..+|. +++.+..+......+.++
T Consensus 243 -~g~~-~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~------------------ 300 (330)
T 3hxj_A 243 -DGTE-KWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATP------------------ 300 (330)
T ss_dssp -TSCE-EEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCC------------------
T ss_pred -CCCE-eEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccce------------------
Confidence 3332 222333333344566666664 666778888999995 777776665443334333
Q ss_pred cccccccceeEecCCCeEEEeeCCCceEE
Q 012799 427 DMSCCMSLYSWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 427 ~~~~~~~~~~~s~dg~~l~s~s~Dg~v~i 455 (456)
...++|+ |..++.+|.+++
T Consensus 301 ---------~~d~~g~-l~~gt~~G~~~~ 319 (330)
T 3hxj_A 301 ---------VIDENGT-IYFGTRNGKFYA 319 (330)
T ss_dssp ---------EECTTCC-EEEECTTSCEEE
T ss_pred ---------EEcCCCE-EEEEcCCCeEEE
Confidence 5567765 555888888865
No 224
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.36 E-value=5.5e-11 Score=116.19 Aligned_cols=271 Identities=12% Similarity=0.075 Sum_probs=169.8
Q ss_pred CCeEEEEECCCcEEEEeCCCCcceeEEecCCCC-----------EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW-----------VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (456)
Q Consensus 120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 188 (456)
+..+++++.++.|..+|..+++.+.++...... ...+++ ++..|++++.|+.|..+|..+|+.+...
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 456777777889999999999988877643210 112333 4668888899999999999999876532
Q ss_pred ccC-cccceEEEEecccccCCCCCEEEEEeC------CCcEEEEECCCCeEEEEecCcCcc-------------------
Q 012799 189 LSG-HKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSGHTLA------------------- 242 (456)
Q Consensus 189 ~~~-~~~~v~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~------------------- 242 (456)
... .......+.-.|.. .+..+++++. +|.|+.+|..+++.+..+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v---~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV---FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred cCCcCcCcCcccccCcEE---ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 221 00000011111111 2345555553 689999999999998777432111
Q ss_pred -------------EEEEEeCCCC-eEEEEeCCC-------------------cEEEEECCCCeEEEEeecCCcce-----
Q 012799 243 -------------VTCVKWGGDG-VIYTGSQDC-------------------TIKVWETTQGKLIRELKGHGHWV----- 284 (456)
Q Consensus 243 -------------v~~~~~~~~~-~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~i----- 284 (456)
...+++++++ .++.+..++ .|..+|.++|+.+..++......
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~ 311 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS 311 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence 1246777766 777776654 59999999999988776422110
Q ss_pred ----EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc-
Q 012799 285 ----NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH- 359 (456)
Q Consensus 285 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~- 359 (456)
..+....++. ....++.++.+|.++++|..+++.........
T Consensus 312 ~~~p~l~~~~~dG~---------------------------------~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~ 358 (677)
T 1kb0_A 312 TQPMILADIKIAGK---------------------------------PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPV 358 (677)
T ss_dssp CSCCEEEEEEETTE---------------------------------EEEEEEECCTTSEEEEEETTTCCEEEEEESSCC
T ss_pred CCCcEEEecccCCc---------------------------------EeeEEEEECCCCEEEEEECCCCCEecccccccc
Confidence 0011111100 01458899999999999977665432211110
Q ss_pred ---------cccE------------------------eEEEECCCCCEEEEEEC--------------------------
Q 012799 360 ---------QQLV------------------------NHVYFSPDGQWVASASF-------------------------- 380 (456)
Q Consensus 360 ---------~~~v------------------------~~~~~sp~~~~l~s~~~-------------------------- 380 (456)
..++ ..++++|++.++++...
T Consensus 359 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 438 (677)
T 1kb0_A 359 NWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGT 438 (677)
T ss_dssp SSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGG
T ss_pred CcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccc
Confidence 0011 25788998888877543
Q ss_pred -----------------CCcEEEEeCCCCeEEEEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCe
Q 012799 381 -----------------DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL 443 (456)
Q Consensus 381 -----------------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 443 (456)
.|.|..||+.+|+.+..+.. ..++... .++.++..
T Consensus 439 ~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g---------------------------~~~~~g~~ 490 (677)
T 1kb0_A 439 GWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGG---------------------------TLTTAGNV 490 (677)
T ss_dssp TCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCC---------------------------EEEETTTE
T ss_pred ccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCc---------------------------ceEeCCCE
Confidence 27899999999998887763 2333333 45677788
Q ss_pred EEEeeCCCceEEC
Q 012799 444 LLSGSKDSTLKVT 456 (456)
Q Consensus 444 l~s~s~Dg~v~iW 456 (456)
++.++.||.+++|
T Consensus 491 v~~g~~dg~l~a~ 503 (677)
T 1kb0_A 491 VFQGTADGRLVAY 503 (677)
T ss_dssp EEEECTTSEEEEE
T ss_pred EEEECCCCcEEEE
Confidence 8888889988865
No 225
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.36 E-value=7.9e-10 Score=100.70 Aligned_cols=231 Identities=9% Similarity=0.029 Sum_probs=149.1
Q ss_pred CCeEEEEECCCcEEEEeCCCCcceeEEecC---------CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccccc
Q 012799 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGH---------KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS 190 (456)
Q Consensus 120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 190 (456)
+..+++++.++.|..+|..+++.+...... ...+.+. ...++..++.++.++.|..+|.++|+.......
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 567778888899999999999988766542 1223221 112456788889999999999999986542211
Q ss_pred CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccE-----EEEEeCCCCeEEEEeCCCcEEE
Q 012799 191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV-----TCVKWGGDGVIYTGSQDCTIKV 265 (456)
Q Consensus 191 ~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~l~~~~~dg~i~i 265 (456)
. . .+. -.|.. .+..+++++.++.|..+|..+++.+.......... ...... ++.+++++.++.+..
T Consensus 132 ~-~-~~~---~~p~~---~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 132 A-G-EAL---SRPVV---SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FGAAVVGGDNGRVSA 202 (376)
T ss_dssp S-S-CCC---SCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TTEEEECCTTTEEEE
T ss_pred C-C-ceE---cCCEE---ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CCEEEEEcCCCEEEE
Confidence 1 1 110 01111 34578888999999999999998887765432111 111122 458888899999999
Q ss_pred EECCCCeEEEEeecCCcc----eEE---EEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC
Q 012799 266 WETTQGKLIRELKGHGHW----VNS---LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (456)
Q Consensus 266 wd~~~~~~~~~~~~~~~~----i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 338 (456)
+|..+++.+......... +.. +...|. ..+..++.++.+
T Consensus 203 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~----------------------------------~~~~~v~~~~~~ 248 (376)
T 3q7m_A 203 VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV----------------------------------VVNGVVFALAYN 248 (376)
T ss_dssp EETTTCCEEEEEECCC-----------CCCCCCE----------------------------------EETTEEEEECTT
T ss_pred EECCCCcEEEEEecccCCCCcccccccccCCCcE----------------------------------EECCEEEEEecC
Confidence 999999988776532110 000 000010 014558888889
Q ss_pred CcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEe
Q 012799 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR 399 (456)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 399 (456)
+.+..+|..+++...... ......+.. ++..|+.++.+|.+..+|..+|+.+....
T Consensus 249 g~l~~~d~~tG~~~w~~~---~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 249 GNLTALDLRSGQIMWKRE---LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp SCEEEEETTTCCEEEEEC---CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred cEEEEEECCCCcEEeecc---CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence 999999977665433221 122344444 46678888899999999999999877665
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.35 E-value=9.9e-11 Score=114.66 Aligned_cols=153 Identities=14% Similarity=0.171 Sum_probs=99.4
Q ss_pred CCeEEEEECCCcEEEEeCCCCcceeEEecC--CCCEEEEEEcC---CCCEEEEEe------CCCeEEEEeCCCCCCcccc
Q 012799 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGH--KNWVLCIAWSA---DGKHLVSGS------KAGELQCWDPQTGKPSGNP 188 (456)
Q Consensus 120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~---~~~~l~s~~------~dg~i~vwd~~~~~~~~~~ 188 (456)
+..++.++.|+.|..+|..+++.+...... ......+..+| ++ .+++++ .+|.|..||.++|+.+...
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 557888889999999999999988776542 11111111122 44 444443 3789999999999875432
Q ss_pred ccCc------------------------------ccceEEEEecccccCCCCCEEEEEeCCCc-----------------
Q 012799 189 LSGH------------------------------KKWITGISWEPVHLNAPCRRFVSASKDGD----------------- 221 (456)
Q Consensus 189 ~~~~------------------------------~~~v~~~~~~~~~~~~~~~~l~~~~~dg~----------------- 221 (456)
.... ......+++.| +...++.++.++.
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-----~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~ 274 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-----ELNLLYIGVGNGSLWDPKWRSQAKGDNLFL 274 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-----TTTEEEEECCCEESSCHHHHHTTCSCCTTT
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-----CCCEEEEeCCCCCccccCCCCCCCCCceee
Confidence 2100 00011345555 6778888887763
Q ss_pred --EEEEECCCCeEEEEecC--cC-------ccEEEEEeCCCC----eEEEEeCCCcEEEEECCCCeEEEEee
Q 012799 222 --ARIWDVSLRKCVICLSG--HT-------LAVTCVKWGGDG----VIYTGSQDCTIKVWETTQGKLIRELK 278 (456)
Q Consensus 222 --i~iwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~ 278 (456)
|..+|..+++.+..+.. |. .+........+| .++.++.+|.++++|.++|+.+....
T Consensus 275 ~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 346 (689)
T 1yiq_A 275 SSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKG 346 (689)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred eeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccc
Confidence 99999999999887753 21 122222222233 58888999999999999999886544
No 227
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.34 E-value=2.5e-11 Score=108.58 Aligned_cols=243 Identities=10% Similarity=-0.023 Sum_probs=156.3
Q ss_pred cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCCCCccccccC-c-----cc
Q 012799 131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDPQTGKPSGNPLSG-H-----KK 194 (456)
Q Consensus 131 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~-~-----~~ 194 (456)
+|.++|..+++.+.++.....+ .+.++||+++++++. .++.|.+||+.+++....+..+ . ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 7889999999999998766666 799999999999886 3688999999999877643222 0 12
Q ss_pred ceEEEEecccccCCCCCEEEEEeC--CCcEEE--EECCCCeEEEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEEC
Q 012799 195 WITGISWEPVHLNAPCRRFVSASK--DGDARI--WDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWET 268 (456)
Q Consensus 195 ~v~~~~~~~~~~~~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~ 268 (456)
....+.++| +|++++++.. +..+.+ +|..+ +..+... .. ....|++ .+++.+.||.+.+.|+
T Consensus 125 ~P~~ia~Sp-----DGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~ 192 (368)
T 1mda_H 125 RVHIIGNCA-----SSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDL 192 (368)
T ss_dssp CTTSEEECT-----TSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEEC
T ss_pred CcceEEEcC-----CCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEEC
Confidence 345778888 9999998875 457888 88877 3333211 11 1123444 5667778888888888
Q ss_pred CC-----CeEEEE----eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCC
Q 012799 269 TQ-----GKLIRE----LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339 (456)
Q Consensus 269 ~~-----~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 339 (456)
.+ ++.... +.....+. . .++ +..++..+. +
T Consensus 193 ~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~------------------------------------~~~~~~vs~-~ 231 (368)
T 1mda_H 193 AAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANY------------------------------------PGMLVWAVA-S 231 (368)
T ss_dssp CSSCCCCEECCCCSCTTSCBCSCCE---E-ETT------------------------------------TTEEEECBS-S
T ss_pred ccccccCCeEEEEeeeeeeCCCCcc---c-ccc------------------------------------CCEEEEEcC-C
Confidence 76 332210 11111111 1 111 333555555 8
Q ss_pred cEEEEecCCCCCC-ccccc-------cc---cccEeEEEECCCCCEEEEEEC---------CCcEEEEeCCCCeEEEEEe
Q 012799 340 TMFLWEPAVSKQP-KTRMT-------GH---QQLVNHVYFSPDGQWVASASF---------DKSIKLWNGTTGKFVAVFR 399 (456)
Q Consensus 340 ~i~iwd~~~~~~~-~~~~~-------~~---~~~v~~~~~sp~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~ 399 (456)
.+.+.|....... ...+. .+ ......++++|+++.++.+.. ++.+.++|+.+++.+..+.
T Consensus 232 ~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~ 311 (368)
T 1mda_H 232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS 311 (368)
T ss_dssp CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE
Confidence 9999997543211 11110 01 111222689999998776543 2356799999999988876
Q ss_pred cccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCC-eEEEee-CCCceEEC
Q 012799 400 GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGS-KDSTLKVT 456 (456)
Q Consensus 400 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~s~s-~Dg~v~iW 456 (456)
... ....+ +|+|||+ .+++.. .++.|.|+
T Consensus 312 vg~-~p~gi---------------------------~~s~Dg~~l~va~~~~~~~VsVI 342 (368)
T 1mda_H 312 NGH-DSDAI---------------------------IAAQDGASDNYANSAGTEVLDIY 342 (368)
T ss_dssp EEE-EECEE---------------------------EECCSSSCEEEEEETTTTEEEEE
T ss_pred CCC-CcceE---------------------------EECCCCCEEEEEccCCCCeEEEE
Confidence 443 45666 8899998 456666 58888764
No 228
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.33 E-value=1.8e-10 Score=113.62 Aligned_cols=213 Identities=11% Similarity=0.082 Sum_probs=128.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-----CCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC---
Q 012799 149 HKNWVLCIAWSADGKHLVSGS-----KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG--- 220 (456)
Q Consensus 149 ~~~~v~~~~~~~~~~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg--- 220 (456)
|...+..++|||||++||.+. ....|++||+.+++.... + +..+.+.....+ |++.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~----~---~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~ 198 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET----P---LKDVKFSGISWL-GNEGFFYSSYDKPDG 198 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE----E---EEEEESCCCEEE-TTTEEEEEESSCCC-
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc----c---cCCceeccEEEe-CCCEEEEEEecCccc
Confidence 556788999999999988543 234799999999885431 1 222222222334 667888887774
Q ss_pred ----------cEEEEECCCCe----EEEEecC-cCccEEEEEeCCCC-eE-EEEeC---CCcEEEEECCCCe-EEEEeec
Q 012799 221 ----------DARIWDVSLRK----CVICLSG-HTLAVTCVKWGGDG-VI-YTGSQ---DCTIKVWETTQGK-LIRELKG 279 (456)
Q Consensus 221 ----------~i~iwd~~~~~----~~~~~~~-~~~~v~~~~~~~~~-~l-~~~~~---dg~i~iwd~~~~~-~~~~~~~ 279 (456)
.|++|++.+.. .+..... +......+.|+|+| .+ ++... ++.|+++|+.++. ....+..
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~ 278 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG 278 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC
Confidence 39999997654 3333333 44567889999999 44 33332 2589999997763 3344444
Q ss_pred CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC---CCcEEEEecCCCCC-Cccc
Q 012799 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD---DFTMFLWEPAVSKQ-PKTR 355 (456)
Q Consensus 280 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~-~~~~ 355 (456)
+....... +++++ +.+++.... .+.|..+|+..... ....
T Consensus 279 ~~~~~~~~-~~~~g-----------------------------------~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~ 322 (693)
T 3iuj_A 279 DLDADVSL-VDNKG-----------------------------------STLYLLTNRDAPNRRLVTVDAANPGPAHWRD 322 (693)
T ss_dssp SSSSCEEE-EEEET-----------------------------------TEEEEEECTTCTTCEEEEEETTSCCGGGCEE
T ss_pred CCCceEEE-EeccC-----------------------------------CEEEEEECCCCCCCEEEEEeCCCCCccccEE
Confidence 44444333 33331 222334333 36789999776542 1233
Q ss_pred cccccccEeEEEECCCCCEEEEEECCC---cEEEEeCCCCeEEEEEe-cccccEEEE
Q 012799 356 MTGHQQLVNHVYFSPDGQWVASASFDK---SIKLWNGTTGKFVAVFR-GHVGPVYQI 408 (456)
Q Consensus 356 ~~~~~~~v~~~~~sp~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~-~~~~~v~~i 408 (456)
+..|...+. .|++++++|+....++ .|++|++..+. ...+. ...+.+..+
T Consensus 323 l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~ 376 (693)
T 3iuj_A 323 LIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGF 376 (693)
T ss_dssp EECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEEC
T ss_pred EecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEee
Confidence 445555554 8899998877665544 68999987544 34443 233445555
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.30 E-value=1.7e-10 Score=103.17 Aligned_cols=246 Identities=11% Similarity=-0.003 Sum_probs=154.4
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEE----------CCCcEEEEeCCCCcceeEEecC-------CCCEEEEEEcCCCCE
Q 012799 102 ATIAGHTEAVLSVAFSPDGRQLASGS----------GDTTVRLWDLNTQTPMFKCTGH-------KNWVLCIAWSADGKH 164 (456)
Q Consensus 102 ~~l~~h~~~V~~~~~s~~~~~l~~~~----------~d~~v~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~ 164 (456)
.++.....+ .++++||+++++++. .++.|.+||..+++.+.++... ......++++|||++
T Consensus 60 ~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~ 137 (368)
T 1mda_H 60 GHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSAC 137 (368)
T ss_dssp EEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSC
T ss_pred EEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCE
Confidence 334333345 799999999988886 3678999999999999888633 134668999999999
Q ss_pred EEEEeC--CCeEEE--EeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC-----CeEEEE
Q 012799 165 LVSGSK--AGELQC--WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-----RKCVIC 235 (456)
Q Consensus 165 l~s~~~--dg~i~v--wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~ 235 (456)
++++.. +..+.+ +|..+ ......+ +. ....|. ....+++.+.||.+.+.|+.+ ++....
T Consensus 138 lyVan~~~~~~v~V~~iD~~t---v~~i~v~--~~---~~~~p~----g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~ 205 (368)
T 1mda_H 138 LLFFLFGSSAAAGLSVPGASD---DQLTKSA--SC---FHIHPG----AAATHYLGSCPASLAASDLAAAPAAAGIVGAQ 205 (368)
T ss_dssp EEEEECSSSCEEEEEETTTEE---EEEEECS--SC---CCCEEE----ETTEEECCCCTTSCEEEECCSSCCCCEECCCC
T ss_pred EEEEccCCCCeEEEEEEchhh---ceEEECC--Cc---eEEccC----CCeEEEEEcCCCCEEEEECccccccCCeEEEE
Confidence 999875 467888 99876 2111111 10 111221 224556667788888888876 332211
Q ss_pred ----ecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCe--EEEEeecCC----------cceEEEEecCcceeeecc
Q 012799 236 ----LSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGK--LIRELKGHG----------HWVNSLALSTEYALRTGA 299 (456)
Q Consensus 236 ----~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~----------~~i~~~~~~~~~~~~~~~ 299 (456)
+.-...+. .....+.++..+. +.+.+.|+..+. .+..+.... .....+.++++
T Consensus 206 ~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d------- 274 (368)
T 1mda_H 206 CTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN------- 274 (368)
T ss_dssp SCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT-------
T ss_pred eeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC-------
Confidence 11112333 3333445555566 999999986532 333222110 01111456665
Q ss_pred ccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC---------CCcEEEEecCCCCCCccccccccccEeEEEECC
Q 012799 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD---------DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP 370 (456)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp 370 (456)
+.+++.+.. ++.+.++|+.+.+.. ..+... .....++|+|
T Consensus 275 -----------------------------g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv-~~i~vg-~~p~gi~~s~ 323 (368)
T 1mda_H 275 -----------------------------TDGIMILTVEHSRSCLAAAENTSSVTASVGQTS-GPISNG-HDSDAIIAAQ 323 (368)
T ss_dssp -----------------------------TTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE-ECCEEE-EEECEEEECC
T ss_pred -----------------------------CCEEEEEeccccCcccccCCCEEEEECCCCeEE-EEEECC-CCcceEEECC
Confidence 444554432 235669998776543 333222 2588999999
Q ss_pred CCC-EEEEEE-CCCcEEEEeCCCCeEEEEEecccc
Q 012799 371 DGQ-WVASAS-FDKSIKLWNGTTGKFVAVFRGHVG 403 (456)
Q Consensus 371 ~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~ 403 (456)
||+ ++++.. .++.|.++|+.+++.+..+.....
T Consensus 324 Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~ 358 (368)
T 1mda_H 324 DGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG 358 (368)
T ss_dssp SSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC
T ss_pred CCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC
Confidence 998 466666 599999999999999998875544
No 230
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.30 E-value=1.6e-12 Score=117.74 Aligned_cols=207 Identities=10% Similarity=0.027 Sum_probs=114.1
Q ss_pred CCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEE
Q 012799 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITG 198 (456)
Q Consensus 119 ~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 198 (456)
++..+++++.||.|+.||..+++.+..+.. +.+.+..+..++..+++++.||.|..||.++|+............+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~-- 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV-- 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH--
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc--
Confidence 577899999999999999999999988875 5555555666787888888999999999998876542211111111
Q ss_pred EEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECCCCeEEEEe
Q 012799 199 ISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIREL 277 (456)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~ 277 (456)
...|. . ..+..+++++.++.++.||..+++.+..+..+.. ..++|++ .+++++.++.|+.||.++|+.+..+
T Consensus 84 -~~sp~-~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 84 -QASPC-R-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNA 156 (369)
T ss_dssp -TTCSC-C------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred -ccCce-E-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccccCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence 00111 0 0345678888899999999999998877765432 2334455 8888999999999999999876555
Q ss_pred ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccc
Q 012799 278 KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT 357 (456)
Q Consensus 278 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 357 (456)
.... .....+..+. .....+++++.||.++.||..+++.... ..
T Consensus 157 ~~~~--~~~~~~~~~~---------------------------------~~~~~v~~~~~dg~v~a~d~~tG~~~W~-~~ 200 (369)
T 2hz6_A 157 TYFD--YAASLPEDDV---------------------------------DYKMSHFVSNGDGLVVTVDSESGDVLWI-QN 200 (369)
T ss_dssp EEEE--ECCBCCCCCT---------------------------------TCCCCEEEEETSCEEEEECTTTCCEEEE-EE
T ss_pred eccc--ccCccccCCc---------------------------------cccceEEEECCCCEEEEEECCCCcEEEE-ec
Confidence 4211 0111111110 0024578889999999999876654332 22
Q ss_pred cccccE-eEEEECCCCC
Q 012799 358 GHQQLV-NHVYFSPDGQ 373 (456)
Q Consensus 358 ~~~~~v-~~~~~sp~~~ 373 (456)
...++ ....++++|.
T Consensus 201 -~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 201 -YASPVVAFYVWQREGL 216 (369)
T ss_dssp -CSSCEEEEEECTTSSC
T ss_pred -CCCceEEEEEecCCce
Confidence 22333 3345566664
No 231
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.29 E-value=1.4e-12 Score=118.16 Aligned_cols=195 Identities=14% Similarity=0.098 Sum_probs=110.8
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcC
Q 012799 161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT 240 (456)
Q Consensus 161 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 240 (456)
++..+++++.||.|..||..+|+....... ..+.+..+.. ++..+++++.||.|+.||..+++.+..+..+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~-----~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~ 79 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHV-----EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTI 79 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC----------CCEEECTTTCCEEEC-----CCSEECSCCH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEc-----CCCEEEEeCCCCEEEEEECCCCceeeeeeccC
Confidence 677899999999999999999987653222 2333222222 56678888899999999999888766664332
Q ss_pred cc-EE-EEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHH
Q 012799 241 LA-VT-CVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (456)
Q Consensus 241 ~~-v~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (456)
.. +. ...+..++.+++++.++.++.||..+|+.+..+..+.. ..++|
T Consensus 80 ~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p--------------------------- 128 (369)
T 2hz6_A 80 PELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSP--------------------------- 128 (369)
T ss_dssp HHHHTTCSCC-----CCCCEEEEEEEEECCC-------------------------------------------------
T ss_pred ccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccc---------------------------
Confidence 11 10 01111345788889999999999999998877654321 11222
Q ss_pred hhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCC---CEEEEEECCCcEEEEeCCCCeEE
Q 012799 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG---QWVASASFDKSIKLWNGTTGKFV 395 (456)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~s~~~dg~i~iwd~~~~~~~ 395 (456)
.+..+++++.|+.|+.||..+++..... ..+. ....+++++. ..+++++.||.++.||..+|+.+
T Consensus 129 ---------~~~~v~~~~~dg~v~a~d~~tG~~~W~~-~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 129 ---------STSLLYLGRTEYTITMYDTKTRELRWNA-TYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL 196 (369)
T ss_dssp -------------EEEEEEEEEEECCCSSSSSCCCEE-EEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred ---------cCCEEEEEecCCEEEEEECCCCCEEEeE-eccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence 2456888999999999998776644332 1111 2233344432 45777889999999999999998
Q ss_pred EEEecccccEEE
Q 012799 396 AVFRGHVGPVYQ 407 (456)
Q Consensus 396 ~~~~~~~~~v~~ 407 (456)
..+.. ..++..
T Consensus 197 W~~~~-~~pv~~ 207 (369)
T 2hz6_A 197 WIQNY-ASPVVA 207 (369)
T ss_dssp EEEEC-SSCEEE
T ss_pred EEecC-CCceEE
Confidence 87763 344433
No 232
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.26 E-value=3.6e-10 Score=110.50 Aligned_cols=239 Identities=13% Similarity=0.090 Sum_probs=152.3
Q ss_pred CCCeEEEEECCCcEEEEeCCCCcceeEEecC-C----CCEEE-EEEcCCCCEEEEEeC------CCeEEEEeCCCCCCcc
Q 012799 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGH-K----NWVLC-IAWSADGKHLVSGSK------AGELQCWDPQTGKPSG 186 (456)
Q Consensus 119 ~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~-~----~~v~~-~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~ 186 (456)
++..++.++.|+.|..+|..+++.+..+..+ . ..+.+ ... .+..+++++. +|.|..+|.++|+.+.
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 3567888889999999999999998887754 1 11211 111 2345555543 6899999999998654
Q ss_pred ccccCcc-------------------------------cceEEEEecccccCCCCCEEEEEeCCC---------------
Q 012799 187 NPLSGHK-------------------------------KWITGISWEPVHLNAPCRRFVSASKDG--------------- 220 (456)
Q Consensus 187 ~~~~~~~-------------------------------~~v~~~~~~~~~~~~~~~~l~~~~~dg--------------- 220 (456)
....... .....+++.| ++..++.++.++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-----~~~~vy~~~~~~~~w~~~~~~~~~gd~ 279 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-----ELNTMYVGTGNGSPWSHKVRSPKGGDN 279 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-----TTTEEEEECCCEESSCHHHHSTTCCCC
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-----CCCEEEEECCCCccccCCCCCccCCCC
Confidence 3211100 0112345555 677888777654
Q ss_pred ----cEEEEECCCCeEEEEecC--cC-------ccEEEEEeCCCC----eEEEEeCCCcEEEEECCCCeEEEEeecCCcc
Q 012799 221 ----DARIWDVSLRKCVICLSG--HT-------LAVTCVKWGGDG----VIYTGSQDCTIKVWETTQGKLIRELKGHGHW 283 (456)
Q Consensus 221 ----~i~iwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 283 (456)
.|..+|..+++.+..+.. |. .....+....+| .++.++.+|.++++|..+|+.+..+......
T Consensus 280 ~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~ 359 (677)
T 1kb0_A 280 LYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVN 359 (677)
T ss_dssp TTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS
T ss_pred eeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccC
Confidence 599999999998877653 21 111222222233 6888999999999999999998776532211
Q ss_pred -eE----------------------------------EEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCC
Q 012799 284 -VN----------------------------------SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (456)
Q Consensus 284 -i~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (456)
.. .++++|+.
T Consensus 360 ~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~----------------------------------- 404 (677)
T 1kb0_A 360 WASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT----------------------------------- 404 (677)
T ss_dssp SEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT-----------------------------------
T ss_pred cccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC-----------------------------------
Confidence 11 12233321
Q ss_pred CCEEEEEe-------------------------------------------CCCcEEEEecCCCCCCccccccccccEeE
Q 012799 329 PERLVSGS-------------------------------------------DDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365 (456)
Q Consensus 329 ~~~l~~~~-------------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 365 (456)
.++++.. ..|.|..||+.+++...... +..++..
T Consensus 405 -~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~ 481 (677)
T 1kb0_A 405 -GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNG 481 (677)
T ss_dssp -TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCC
T ss_pred -CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC--CCCCCcC
Confidence 2222211 23789999987765443322 2233444
Q ss_pred EEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEeccc
Q 012799 366 VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV 402 (456)
Q Consensus 366 ~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 402 (456)
..+..++.+++.++.||.+++||..+|+.+..+....
T Consensus 482 g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 482 GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred cceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence 4566678889999999999999999999999987543
No 233
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.21 E-value=2.2e-09 Score=95.70 Aligned_cols=218 Identities=15% Similarity=0.090 Sum_probs=145.9
Q ss_pred CCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEE
Q 012799 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI 199 (456)
Q Consensus 120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 199 (456)
+..+..++.++.+..+|.. ++.......+...+.++...+++. ++.++.++.|..+|.. ++.... .......+.++
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~-~~~~~~~~~~~ 182 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWR-FKTNDAITSAA 182 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEE-EECSSCCCSCC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEE-EecCCCceeee
Confidence 4457778888999999988 777766665666667777776776 6667788999999988 654332 22223334444
Q ss_pred EecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeec
Q 012799 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG 279 (456)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 279 (456)
...+ ++. +..++ +.+..+| .+++...........+.++...+++.+++++.++.+..+|. +++.+..+..
T Consensus 183 ~~d~-----~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~ 252 (330)
T 3hxj_A 183 SIGK-----DGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKT 252 (330)
T ss_dssp EECT-----TCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred EEcC-----CCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeC
Confidence 4433 555 44455 8899999 77777777665566788888898888888998889999984 5565555543
Q ss_pred CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccc
Q 012799 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH 359 (456)
Q Consensus 280 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 359 (456)
....+..+...+ +..++.++.+|.+..+|. ++. ........
T Consensus 253 ~~~~~~~~~~~~-------------------------------------~g~l~v~t~~ggl~~~d~-~g~-~~~~~~~~ 293 (330)
T 3hxj_A 253 GKRIESSPVIGN-------------------------------------TDTIYFGSYDGHLYAINP-DGT-EKWNFETG 293 (330)
T ss_dssp SSCCCSCCEECT-------------------------------------TSCEEEECTTCEEEEECT-TSC-EEEEEECS
T ss_pred CCCccccceEcC-------------------------------------CCeEEEecCCCCEEEECC-CCc-EEEEEEcC
Confidence 332222222221 334888888999999994 333 23333333
Q ss_pred cccEeEEEECCCCCEEEEEECCCcEEEEeCCC
Q 012799 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391 (456)
Q Consensus 360 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 391 (456)
...+.++...++|+ |..|+.+|.+++...+.
T Consensus 294 ~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 294 SWIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp SCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred CccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 45577778878886 55688899999887653
No 234
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.18 E-value=2.3e-08 Score=89.95 Aligned_cols=220 Identities=15% Similarity=0.140 Sum_probs=138.7
Q ss_pred CCCCeEEEEE-CCCcEEEEeCCCC----cceeEEe-------cCCCCEEEEEEcCCCCEEEEEeCC------CeEEEEeC
Q 012799 118 PDGRQLASGS-GDTTVRLWDLNTQ----TPMFKCT-------GHKNWVLCIAWSADGKHLVSGSKA------GELQCWDP 179 (456)
Q Consensus 118 ~~~~~l~~~~-~d~~v~vwd~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~d------g~i~vwd~ 179 (456)
+++++|+..+ .+++|.++|+.+. +...++. ........+...|+| .++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 7788776654 6789999999755 3444442 011245667888999 66665554 78999999
Q ss_pred CCCCCccccccCcc--cceEEEEecccccCCCCCEEEEEe-------------------CCCcEEEEECCCCeEEEEecC
Q 012799 180 QTGKPSGNPLSGHK--KWITGISWEPVHLNAPCRRFVSAS-------------------KDGDARIWDVSLRKCVICLSG 238 (456)
Q Consensus 180 ~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~l~~~~-------------------~dg~i~iwd~~~~~~~~~~~~ 238 (456)
++++.+.+...+.. ..-..+.|+| +++.+++.. .+..|.+||+.+++.+.++..
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p-----~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v 246 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNL-----PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL 246 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEET-----TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred CCCeEEEEEccCCCCccccceEEECC-----CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence 99887664432211 2234577888 888888875 368999999999988877754
Q ss_pred c--CccEEEEEe--CCCC-eEEEEe------CCCcEEEEECCCCeE--EEEeecC------------------CcceEEE
Q 012799 239 H--TLAVTCVKW--GGDG-VIYTGS------QDCTIKVWETTQGKL--IRELKGH------------------GHWVNSL 287 (456)
Q Consensus 239 ~--~~~v~~~~~--~~~~-~l~~~~------~dg~i~iwd~~~~~~--~~~~~~~------------------~~~i~~~ 287 (456)
. ......+.| +|++ .+++++ .+++|.+|....++. .+.+... ......+
T Consensus 247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I 326 (462)
T 2ece_A 247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI 326 (462)
T ss_dssp CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence 2 133445555 9998 554444 667888876655432 1111000 1223445
Q ss_pred EecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe-CCCcEEEEecCCCCCCcc--cc-cc-----
Q 012799 288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQPKT--RM-TG----- 358 (456)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~--~~-~~----- 358 (456)
.++++ +++|+++. ..+.|.+||+........ .. .+
T Consensus 327 ~lS~D------------------------------------GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~ 370 (462)
T 2ece_A 327 DISLD------------------------------------DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHR 370 (462)
T ss_dssp EECTT------------------------------------SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTC
T ss_pred EECCC------------------------------------CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecc
Confidence 55555 55565554 478999999764332211 11 11
Q ss_pred --c------cccEeEEEECCCCCEEEEEE
Q 012799 359 --H------QQLVNHVYFSPDGQWVASAS 379 (456)
Q Consensus 359 --~------~~~v~~~~~sp~~~~l~s~~ 379 (456)
| ......++++|||++|+++.
T Consensus 371 ~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 371 ADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp BCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 0 01357899999999988887
No 235
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.18 E-value=5.5e-10 Score=100.25 Aligned_cols=182 Identities=13% Similarity=0.063 Sum_probs=114.5
Q ss_pred CCEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCCCcc-----ccccCcccceEEEEecccccCCCCCEEEEEeC-----
Q 012799 151 NWVLCIAWSADGKHLVSGSK--AGELQCWDPQTGKPSG-----NPLSGHKKWITGISWEPVHLNAPCRRFVSASK----- 218 (456)
Q Consensus 151 ~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~----- 218 (456)
..+..++++++|+.+++... ++.++||.+.+++... .....+...+..+++.+ +++++++-..
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~-----~g~L~v~D~g~~~~~ 91 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDG-----NGIVWMLDNGNQSKS 91 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECS-----SSEEEEEECHHHHTS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcC-----CCcEEEEcCCCCcCC
Confidence 67899999999998888642 3435555554443221 01123456789999988 7665555433
Q ss_pred CCcEEEEECCCCeEEEEecCc------CccEEEEEeCCC-CeEE-EEe---CCCcEEEEECCCCeEEEEeecCCcceE-E
Q 012799 219 DGDARIWDVSLRKCVICLSGH------TLAVTCVKWGGD-GVIY-TGS---QDCTIKVWETTQGKLIRELKGHGHWVN-S 286 (456)
Q Consensus 219 dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~-~~l~-~~~---~dg~i~iwd~~~~~~~~~~~~~~~~i~-~ 286 (456)
++.|.+||+.+++.+..+... ...+..++++++ +.++ +.. .++.|.+||+.+++..+.+..|..... .
T Consensus 92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~ 171 (343)
T 2qe8_A 92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED 171 (343)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS
T ss_pred CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc
Confidence 578999999999876665421 234688999975 4544 444 578999999998887666644321100 0
Q ss_pred EEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEE
Q 012799 287 LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHV 366 (456)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 366 (456)
..+..+ +..+.+...++.+..|. ..+..+
T Consensus 172 ~~~~~~------------------------------------g~~~~~~~~~g~~~~~~---------------~~~~gi 200 (343)
T 2qe8_A 172 IDLVID------------------------------------GVPVQIGQPDGTVIRPH---------------LGVNGI 200 (343)
T ss_dssp CCCEET------------------------------------TEECBEECTTSCEECCC---------------CCEEEE
T ss_pred cceeEC------------------------------------CEEEEeccCCCceecee---------------ccccee
Confidence 111111 22344555666665443 136789
Q ss_pred EECCCCCEEEEEECCC-cEEEEe
Q 012799 367 YFSPDGQWVASASFDK-SIKLWN 388 (456)
Q Consensus 367 ~~sp~~~~l~s~~~dg-~i~iwd 388 (456)
+|+|+|+.|+.+..++ .+..++
T Consensus 201 a~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 201 VLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp EECTTSCEEEEEESSCSEEEEEE
T ss_pred EeccCCCEEEEEeCCCCeEEEEE
Confidence 9999999988887776 444443
No 236
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.11 E-value=7.2e-09 Score=101.20 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=99.9
Q ss_pred CCeEEEEECCCcEEEEeCCCCcceeEEecCCCC----------E-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW----------V-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (456)
Q Consensus 120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 188 (456)
+..++.++.++.|..+|..+++.+.++...... + ..+++ .+..++.++.|+.|..+|.++|+.+...
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 456777778899999999999998877533211 0 11222 3567888889999999999999876533
Q ss_pred ccCcccceEEEEecccccCCCCCEEEEEeC------CCcEEEEECCCCeEEEEecCcC---c------------------
Q 012799 189 LSGHKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSGHT---L------------------ 241 (456)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~---~------------------ 241 (456)
..........+...|.- .+..++++.. +|.|+.+|..+++.+..+.... .
T Consensus 144 ~~~~~~~~~~~~~~P~v---~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 220 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRV---VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD 220 (668)
T ss_dssp ECSCTTSSCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred ccCCCCCcceecCCCEE---ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence 22111100111111211 1235555543 5899999999999988774210 0
Q ss_pred ----------cEEEEEeCCCC-eEEEEeCCC-------------------cEEEEECCCCeEEEEeec
Q 012799 242 ----------AVTCVKWGGDG-VIYTGSQDC-------------------TIKVWETTQGKLIRELKG 279 (456)
Q Consensus 242 ----------~v~~~~~~~~~-~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~ 279 (456)
....++++++. .++.++.++ .|..+|.++|+.+..++.
T Consensus 221 ~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~ 288 (668)
T 1kv9_A 221 QYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQV 288 (668)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES
T ss_pred ceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeec
Confidence 01235777755 777777765 399999999999888764
No 237
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.08 E-value=1.4e-07 Score=84.86 Aligned_cols=198 Identities=12% Similarity=0.100 Sum_probs=120.9
Q ss_pred CCCCEEEE-EeCCCeEEEEeCCCCCC----cccc----cc-C-cccceEEEEecccccCCCCCEEEEEeCC------CcE
Q 012799 160 ADGKHLVS-GSKAGELQCWDPQTGKP----SGNP----LS-G-HKKWITGISWEPVHLNAPCRRFVSASKD------GDA 222 (456)
Q Consensus 160 ~~~~~l~s-~~~dg~i~vwd~~~~~~----~~~~----~~-~-~~~~v~~~~~~~~~~~~~~~~l~~~~~d------g~i 222 (456)
+++++|+. +..++.|.++|+.+... ...+ +. . ....-..+...| +| .++++..+ |.|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-----dG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-----DA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-----SC-EEEEEEEETTSCSCCEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-----Ce-EEEEcCCCcCCCCCCeE
Confidence 77777766 45578899999975421 1111 00 0 011233444555 77 66666555 789
Q ss_pred EEEECCCCeEEEEecCcCc---cEEEEEeCCCC-eEEEEe-------------------CCCcEEEEECCCCeEEEEeec
Q 012799 223 RIWDVSLRKCVICLSGHTL---AVTCVKWGGDG-VIYTGS-------------------QDCTIKVWETTQGKLIRELKG 279 (456)
Q Consensus 223 ~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~-~l~~~~-------------------~dg~i~iwd~~~~~~~~~~~~ 279 (456)
.++|..+.+.+..+..... .-..+-|+|++ .+++.. .+.+|.+||+.+++.+.++..
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v 246 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL 246 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred EEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence 9999999999988863322 23357789988 566553 368999999999988888865
Q ss_pred C--CcceEEEEe--cCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe------CCCcEEEEecCCC
Q 012799 280 H--GHWVNSLAL--STEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS------DDFTMFLWEPAVS 349 (456)
Q Consensus 280 ~--~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~ 349 (456)
. ......+.+ +|++ .++++++ .+++|.+|....+
T Consensus 247 g~~g~~P~~i~f~~~Pdg------------------------------------~~aYV~~e~~~~~Lss~V~v~~~d~g 290 (462)
T 2ece_A 247 GEENRMALELRPLHDPTK------------------------------------LMGFINMVVSLKDLSSSIWLWFYEDG 290 (462)
T ss_dssp CTTEEEEEEEEECSSTTC------------------------------------CEEEEEEEEETTTCCEEEEEEEEETT
T ss_pred CCCCCccceeEeeECCCC------------------------------------CEEEEEEeeeccCCCceEEEEEecCC
Confidence 3 123344544 7763 3344444 4567765543221
Q ss_pred CC------------Ccccc-------ccccccEeEEEECCCCCEEEEEEC-CCcEEEEeCCC---CeEEEEEe
Q 012799 350 KQ------------PKTRM-------TGHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGTT---GKFVAVFR 399 (456)
Q Consensus 350 ~~------------~~~~~-------~~~~~~v~~~~~sp~~~~l~s~~~-dg~i~iwd~~~---~~~~~~~~ 399 (456)
.. ....+ .+-......+.+||||++|.++.. .+.|.+||+.+ .+++..+.
T Consensus 291 ~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~ 363 (462)
T 2ece_A 291 KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVK 363 (462)
T ss_dssp EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEE
T ss_pred ceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEE
Confidence 00 00000 000245788999999999887664 67999999863 34444443
No 238
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.07 E-value=3.2e-07 Score=78.94 Aligned_cols=242 Identities=12% Similarity=0.020 Sum_probs=142.5
Q ss_pred CeEEEEECCCcEEEEeCCCCcce-----eEEecCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCCCccccccCccc
Q 012799 121 RQLASGSGDTTVRLWDLNTQTPM-----FKCTGHKNWVLCIAWSADGKHLVSG-SKAGELQCWDPQTGKPSGNPLSGHKK 194 (456)
Q Consensus 121 ~~l~~~~~d~~v~vwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~ 194 (456)
++|+.+.. +.|+.++++..... ..+......+..++|++++..|+.+ ..++.|..++...+.... .......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~-~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT-IIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE-EECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE-EEECCCC
Confidence 44555543 47888888754321 1122223457899999976655554 457899999987654322 2222224
Q ss_pred ceEEEEecccccCCCCCEEEE-EeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCC-CeEEEEeC---CCcEEEEECC
Q 012799 195 WITGISWEPVHLNAPCRRFVS-ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQ---DCTIKVWETT 269 (456)
Q Consensus 195 ~v~~~~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~---dg~i~iwd~~ 269 (456)
....+++.+ ++..++. -...+.|.++++..................++++|+ +.++.+.. .+.|..+++.
T Consensus 80 ~p~~ia~d~-----~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d 154 (267)
T 1npe_A 80 SPEGIALDH-----LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD 154 (267)
T ss_dssp CEEEEEEET-----TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred CccEEEEEe-----cCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence 567888887 5455544 455678999998654322222222245789999995 56665554 3688888876
Q ss_pred CCeEEEEe-ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCC
Q 012799 270 QGKLIREL-KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV 348 (456)
Q Consensus 270 ~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 348 (456)
... ...+ .........++++++. +..+++....+.|.++|+..
T Consensus 155 g~~-~~~~~~~~~~~P~gia~d~~~-----------------------------------~~lyv~d~~~~~I~~~~~~g 198 (267)
T 1npe_A 155 GTN-RRILAQDNLGLPNGLTFDAFS-----------------------------------SQLCWVDAGTHRAECLNPAQ 198 (267)
T ss_dssp SCC-CEEEECTTCSCEEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTE
T ss_pred CCC-cEEEEECCCCCCcEEEEcCCC-----------------------------------CEEEEEECCCCEEEEEecCC
Confidence 432 2222 2223346778887752 22345556678899999653
Q ss_pred CCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccc-cEEEE
Q 012799 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG-PVYQI 408 (456)
Q Consensus 349 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~i 408 (456)
.. ....... ......++.. ++.++++....+.|..+|..+++.+..+..... ....+
T Consensus 199 ~~-~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi 256 (267)
T 1npe_A 199 PG-RRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGI 256 (267)
T ss_dssp EE-EEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCE
T ss_pred Cc-eEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEcccccccccee
Confidence 22 1111221 2234566664 344444444568999999999998888764321 24455
No 239
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.05 E-value=8.7e-09 Score=95.94 Aligned_cols=223 Identities=14% Similarity=0.045 Sum_probs=138.6
Q ss_pred CCCEEEEEeC-CCeEEEEeCCCCCCccccccCcccceEEEEe-c-ccccCCCCCEEEEEe------------------CC
Q 012799 161 DGKHLVSGSK-AGELQCWDPQTGKPSGNPLSGHKKWITGISW-E-PVHLNAPCRRFVSAS------------------KD 219 (456)
Q Consensus 161 ~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~~~~~l~~~~------------------~d 219 (456)
||++++.... ++.|.+.|+.+.+....+..........+++ . | ++.++++++ .+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-----~~~~v~~~~~~~~p~~~dg~~l~~~~~~~ 174 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-----RSNYVFCNGEDETPLVNDGTNMEDVANYV 174 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-----BCSEEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-----CCcEEEEecccccccCCCCcccccccccC
Confidence 7888887766 4579999999988654222222344677776 3 6 788888885 24
Q ss_pred CcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeCCC-------------------------------------
Q 012799 220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC------------------------------------- 261 (456)
Q Consensus 220 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg------------------------------------- 261 (456)
+.+.++|..+.+...++.-.. ....++++|+| ++++.+.+.
T Consensus 175 ~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i 253 (595)
T 1fwx_A 175 NVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL 253 (595)
T ss_dssp EEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred ceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence 579999999998888775322 34567789988 666666543
Q ss_pred -cEEEEECCC--CeE-EEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCE-EEEEe
Q 012799 262 -TIKVWETTQ--GKL-IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER-LVSGS 336 (456)
Q Consensus 262 -~i~iwd~~~--~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~ 336 (456)
.|.+.|.++ ++. +..+.. .....++.++|+ +.+ ++++.
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPD------------------------------------Gk~v~V~~~ 296 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPD------------------------------------KKHLCVAGK 296 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTT------------------------------------SSEEEEECT
T ss_pred CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCC------------------------------------CCEEEEeCC
Confidence 244444444 222 222221 112334455555 444 44555
Q ss_pred CCCcEEEEecCCCCC-----------CccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCC----------CeEE
Q 012799 337 DDFTMFLWEPAVSKQ-----------PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT----------GKFV 395 (456)
Q Consensus 337 ~dg~i~iwd~~~~~~-----------~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~----------~~~~ 395 (456)
.+.+|.++|+.+... ..... .-......++|+|+|...++.-.|+.|.+||+.+ .+.+
T Consensus 297 ~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi 375 (595)
T 1fwx_A 297 LSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIK 375 (595)
T ss_dssp TSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEE
T ss_pred CCCeEEEEECcccccccccccCcccceEEEc-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeE
Confidence 788999999774310 11111 1224578899999995455667899999999877 5566
Q ss_pred EEEecccccEEEEEeeeeeeecCCCCceeeecccccccceeEecCCCeEEEeeC
Q 012799 396 AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449 (456)
Q Consensus 396 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~ 449 (456)
..+..|-.+-... . . .....+|||++|+++..
T Consensus 376 ~kidV~yqpGh~~-~------------------~---~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 376 DKLDVHYQPGHLK-T------------------V---MGETLDATNDWLVCLSK 407 (595)
T ss_dssp EEEECSSCEEEEE-E------------------T---TTTSTTCCSSEEEEEES
T ss_pred EEeecccccccce-e------------------c---cceEeCCCCCEEEEcCC
Confidence 6776654432111 0 0 01155899999998753
No 240
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.02 E-value=2.7e-06 Score=85.42 Aligned_cols=238 Identities=14% Similarity=0.134 Sum_probs=154.7
Q ss_pred cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEec-------CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-------HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 180 (456)
...|.++...++|. |..|+.++-|..|+..++... .+.. ....|.++...++|+ |..|+.++-|..|+..
T Consensus 309 ~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~ 385 (795)
T 4a2l_A 309 QRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPI 385 (795)
T ss_dssp SSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTT
T ss_pred CCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCC
Confidence 46799999999987 555677777999987654322 2211 245699999888776 5567777779999987
Q ss_pred CCCCcccccc-------CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec----CcCccEEEEEeC
Q 012799 181 TGKPSGNPLS-------GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS----GHTLAVTCVKWG 249 (456)
Q Consensus 181 ~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~ 249 (456)
++........ -....|.++...+ ++..+..|+.++-+..||..+++...... .....|.++...
T Consensus 386 ~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-----~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d 460 (795)
T 4a2l_A 386 TQRFTSYTLQEDESARGIGSNNIKAVYVDE-----KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPD 460 (795)
T ss_dssp TCCEEEECCC------CCSCSCEEEEEEET-----TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEEC
T ss_pred CCcEEEEecCCCCcccCCCCccEEEEEEcC-----CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEEC
Confidence 7653321111 1235688887765 66647778887889999998876544322 134579999999
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeEEEEeec------CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhh
Q 012799 250 GDGVIYTGSQDCTIKVWETTQGKLIRELKG------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK 323 (456)
Q Consensus 250 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (456)
++|.|..|+.+ -+..||..+++....... ....|.++...+++
T Consensus 461 ~~g~lwigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g------------------------------ 509 (795)
T 4a2l_A 461 GEGNLWLGTLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHK------------------------------ 509 (795)
T ss_dssp SSSCEEEEESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTC------------------------------
T ss_pred CCCCEEEEecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCC------------------------------
Confidence 88877777774 588999887755432211 12456666655542
Q ss_pred ccCCCCCEEEEEeCCCcEEEEecCCCCCCccc-----cccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEE
Q 012799 324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR-----MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395 (456)
Q Consensus 324 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~ 395 (456)
.+..|+. +-+..||...... ... .......|.++...++|++.++ +.. .+..||..+++..
T Consensus 510 -------~lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~d~~~~~~~ 575 (795)
T 4a2l_A 510 -------RLWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVG-TRE-GFYCFNEKDKQIK 575 (795)
T ss_dssp -------CEEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEE-ESS-CEEEEETTTTEEE
T ss_pred -------CEEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEE-eCC-CceeECCCCCcEE
Confidence 2555665 5688888654322 100 0123457999999999986554 334 5888998776543
No 241
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.02 E-value=8.2e-07 Score=89.13 Aligned_cols=237 Identities=11% Similarity=0.103 Sum_probs=149.6
Q ss_pred EEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecC-CCC-EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGH-KNW-VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (456)
Q Consensus 111 V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~-~~~-v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 188 (456)
|.++...++|.+.+. +. +.+..||..+++........ ... |.++...+++.+ ..++.++-+..|+..+++.....
T Consensus 133 i~~i~~d~~g~lwi~-t~-~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l-wigt~~~Gl~~~~~~~~~~~~~~ 209 (795)
T 4a2l_A 133 VNGIEEISPEQLLIS-TP-EGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQI-YIGTSTDGLYTYSITQKTFEKVI 209 (795)
T ss_dssp CCEEEEEETTEEEEE-ET-TEEEEEETTTTEEECSSSCHHHHTCCEEEEEEETTEE-EEEESSSCEEEEETTTCCEEECC
T ss_pred EEEEEECCCCCEEEE-EC-CceEEEECCCCEEEeccCCCCCCcceEEEEECCCCCE-EEEECCCCEEEEeCCCCeEEEec
Confidence 888988888876554 44 45889997665422111111 123 888888777754 44666555888998776543211
Q ss_pred ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecC-------cCccEEEEEeCCCCeEEEEeCCC
Q 012799 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG-------HTLAVTCVKWGGDGVIYTGSQDC 261 (456)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~l~~~~~dg 261 (456)
.......|.++...+ ++ .+..|+.++.+..||..+++....... ....|.++...++|.+..|+.+
T Consensus 210 ~~~~~~~i~~i~~d~-----~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~- 282 (795)
T 4a2l_A 210 PILGTKQIQAILQQS-----PT-RIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN- 282 (795)
T ss_dssp ----CCCEEEEEEEE-----TT-EEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-
T ss_pred CCCCCCeeEEEEEcC-----CC-CEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-
Confidence 112345677777655 44 455666555599999887765443321 1356999999999988888876
Q ss_pred cEEEEECCCCeEEEEeec-------CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEE
Q 012799 262 TIKVWETTQGKLIRELKG-------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (456)
Q Consensus 262 ~i~iwd~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (456)
-|.+||..+++....... ....|.++...+++ .+..
T Consensus 283 Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g-------------------------------------~lWi 325 (795)
T 4a2l_A 283 DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQG-------------------------------------GMWL 325 (795)
T ss_dssp CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTS-------------------------------------CEEE
T ss_pred hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCc-------------------------------------CEEE
Confidence 589999887765433211 22456777666542 3778
Q ss_pred EeCCCcEEEEecCCCCCCcccc-----ccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEE
Q 012799 335 GSDDFTMFLWEPAVSKQPKTRM-----TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395 (456)
Q Consensus 335 ~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~ 395 (456)
|+.++-|..|+.....-..... .-....|.++...++|++ ..|+.++-|..|+..+++..
T Consensus 326 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~ 390 (795)
T 4a2l_A 326 GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQRFT 390 (795)
T ss_dssp EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCE-EEEESSSCEEEECTTTCCEE
T ss_pred EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCE-EEEECCCCeEEEcCCCCcEE
Confidence 8888889999854332111100 112356999999998874 45777777999998876543
No 242
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.00 E-value=2.9e-07 Score=77.72 Aligned_cols=194 Identities=12% Similarity=0.003 Sum_probs=135.1
Q ss_pred cEEEEEECCCCCeEEEEEC--CCcEEEEeCCCCcceeEEecCC-CCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCCCc
Q 012799 110 AVLSVAFSPDGRQLASGSG--DTTVRLWDLNTQTPMFKCTGHK-NWVLCIAWSADGKHLVSG-SKAGELQCWDPQTGKPS 185 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~~~~~--d~~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~ 185 (456)
....++|++++.++++.+. ++.|+++|..+++.+..+.-.. .....+++. ++.|+.+ -.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 3679999998765555443 5799999999999888865222 223345554 4455544 45789999999988876
Q ss_pred cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcC-----ccEEEEEeCCCCeEEEEe-C
Q 012799 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT-----LAVTCVKWGGDGVIYTGS-Q 259 (456)
Q Consensus 186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~l~~~~-~ 259 (456)
.....+ ...-..++ + ++..++++..++.|.++|..+.+.+..+.-.. ..+..+.|. ++.+++.. .
T Consensus 100 ~~i~~g-~~~g~glt--~-----Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~ 170 (266)
T 2iwa_A 100 KNFTHQ-MKDGWGLA--T-----DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ 170 (266)
T ss_dssp EEEECC-SSSCCEEE--E-----CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred EEEECC-CCCeEEEE--E-----CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCC
Confidence 643333 12222333 3 66777777778999999999988877765321 236677887 67665555 5
Q ss_pred CCcEEEEECCCCeEEEEeecCC-------------cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccC
Q 012799 260 DCTIKVWETTQGKLIRELKGHG-------------HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326 (456)
Q Consensus 260 dg~i~iwd~~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (456)
++.|.+.|..+++.+..+.... ...+.++++|+.
T Consensus 171 ~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~--------------------------------- 217 (266)
T 2iwa_A 171 TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQEN--------------------------------- 217 (266)
T ss_dssp SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTT---------------------------------
T ss_pred CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCC---------------------------------
Confidence 7899999999999998886421 245789998873
Q ss_pred CCCCEEEEEeCCCcEEEEecCCC
Q 012799 327 NAPERLVSGSDDFTMFLWEPAVS 349 (456)
Q Consensus 327 ~~~~~l~~~~~dg~i~iwd~~~~ 349 (456)
...++++...+.++..++...
T Consensus 218 --~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 218 --KRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp --TEEEEEETTCSEEEEEEEEEC
T ss_pred --CEEEEECCCCCeEEEEEEecc
Confidence 345777878899999887543
No 243
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.98 E-value=3.7e-08 Score=96.25 Aligned_cols=269 Identities=15% Similarity=0.169 Sum_probs=148.5
Q ss_pred CCeEEEEECCCcEEEEeCCCCcceeEEecCCC-CEEEEEEcC--CCCEEEEEeC------CCeEEEEeCCCCCCcccccc
Q 012799 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN-WVLCIAWSA--DGKHLVSGSK------AGELQCWDPQTGKPSGNPLS 190 (456)
Q Consensus 120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~--~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~ 190 (456)
+..++.++.|+.|..+|..+++.+........ ....+.-+| .+..++++.. +|.|..+|.++|+.+.....
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 45678888899999999999998887764210 000011111 1334555433 58999999999987543211
Q ss_pred C--cc----------------------------cceEEEEecccccCCCCCEEEEEeCCC-------------------c
Q 012799 191 G--HK----------------------------KWITGISWEPVHLNAPCRRFVSASKDG-------------------D 221 (456)
Q Consensus 191 ~--~~----------------------------~~v~~~~~~~~~~~~~~~~l~~~~~dg-------------------~ 221 (456)
. .. .....+++.| ....++.++.++ .
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-----~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~ 271 (668)
T 1kv9_A 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-----ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSS 271 (668)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-----TTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-----CCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 0 00 0011234444 567888887665 3
Q ss_pred EEEEECCCCeEEEEecC--cC-------ccEEEEEeCCCC----eEEEEeCCCcEEEEECCCCeEEEEeecCCc-ceEE-
Q 012799 222 ARIWDVSLRKCVICLSG--HT-------LAVTCVKWGGDG----VIYTGSQDCTIKVWETTQGKLIRELKGHGH-WVNS- 286 (456)
Q Consensus 222 i~iwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~- 286 (456)
|..+|..+++.+..+.. |. .+.....+..+| .++.++.+|.++++|..+|+.+........ ....
T Consensus 272 v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~ 351 (668)
T 1kv9_A 272 ILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKV 351 (668)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEE
T ss_pred EEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccc
Confidence 99999999999887753 21 222222222244 488899999999999999998865543221 0011
Q ss_pred ----------------------------------EEecCcceeeeccccCCCCccCChHHHHHHHHhhhhh----ccCC-
Q 012799 287 ----------------------------------LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK----IKGN- 327 (456)
Q Consensus 287 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~- 327 (456)
++++|+..+...........+.... ..+.. ..+.
T Consensus 352 d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~-------~~~~~~~~~~~g~~ 424 (668)
T 1kv9_A 352 DLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEG-------KDFVTRKAFNTAAG 424 (668)
T ss_dssp CTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCG-------GGCCCCSSCCCSSC
T ss_pred ccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeec-------cccccccccccCcc
Confidence 1222211110000000000000000 00000 0000
Q ss_pred -CCCEEE-EEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEeccc
Q 012799 328 -APERLV-SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV 402 (456)
Q Consensus 328 -~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 402 (456)
.....+ ....+|.|..||+.+++.......+ .+.....+...+.+++.++.||.++.||.++|+.+..++...
T Consensus 425 ~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~ 499 (668)
T 1kv9_A 425 FADATDVPAAVVSGALLAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQS 499 (668)
T ss_dssp GGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ccccCCCCCCCccceEEEEeCCCCcEEEEccCC--CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCC
Confidence 000011 2234588999998776544332221 222223344467889999999999999999999999887543
No 244
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.95 E-value=1.1e-06 Score=75.63 Aligned_cols=221 Identities=9% Similarity=-0.015 Sum_probs=131.3
Q ss_pred ccEEEEEECCCCCeEEEE-ECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCCCcc
Q 012799 109 EAVLSVAFSPDGRQLASG-SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-SKAGELQCWDPQTGKPSG 186 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~-~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~ 186 (456)
..+.+++|++++..|..+ ..++.|..++...................+++++++..|+.+ ...+.|.+++++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 356789999976655544 457899999987655443333333578999999976555544 456789999987543211
Q ss_pred ccccCcccceEEEEecccccCCCCCEEEEEeC---CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE-eCCC
Q 012799 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASK---DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG-SQDC 261 (456)
Q Consensus 187 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~-~~dg 261 (456)
...........++++| ++..++.+.. .+.|..+++..................+++++++ .|+.+ ...+
T Consensus 116 -~~~~~~~~P~~i~vd~-----~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~ 189 (267)
T 1npe_A 116 -LFDTGLVNPRGIVTDP-----VRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTH 189 (267)
T ss_dssp -EECSSCSSEEEEEEET-----TTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTT
T ss_pred -EEECCCCCccEEEEee-----CCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCC
Confidence 1222224567888887 6566665554 3688888876433222222233457889999975 55544 4567
Q ss_pred cEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcE
Q 012799 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341 (456)
Q Consensus 262 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 341 (456)
.|..+|+........+... .....++... +..+++....+.|
T Consensus 190 ~I~~~~~~g~~~~~~~~~~-~~P~gi~~d~-------------------------------------~~lyva~~~~~~v 231 (267)
T 1npe_A 190 RAECLNPAQPGRRKVLEGL-QYPFAVTSYG-------------------------------------KNLYYTDWKTNSV 231 (267)
T ss_dssp EEEEEETTEEEEEEEEECC-CSEEEEEEET-------------------------------------TEEEEEETTTTEE
T ss_pred EEEEEecCCCceEEEecCC-CCceEEEEeC-------------------------------------CEEEEEECCCCeE
Confidence 8999998754433333221 1223343321 2334555566889
Q ss_pred EEEecCCCCCCccccccccccEeEEEECCCCC
Q 012799 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ 373 (456)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 373 (456)
..+|..+++.......+.......+++.|++.
T Consensus 232 ~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 232 IAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EEEeCCCCCceEEEccccccccceeeecCccC
Confidence 99996654432222222222356677777653
No 245
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.94 E-value=1.3e-07 Score=90.38 Aligned_cols=154 Identities=14% Similarity=0.124 Sum_probs=94.9
Q ss_pred CCeEEEEEC-CCcEEEEeC-CCCcceeEEecCCCC----------E-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 012799 120 GRQLASGSG-DTTVRLWDL-NTQTPMFKCTGHKNW----------V-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (456)
Q Consensus 120 ~~~l~~~~~-d~~v~vwd~-~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 186 (456)
+..++.++. ++.|.-+|. .+++.+.+....... + ..++. .+..++.++.|+.+..+|.++|+.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 445666666 889999999 899988776532210 0 11222 35678888899999999999998764
Q ss_pred cccc-CcccceEEEEecccccCCCCCEEEEEeC------CCcEEEEECCCCeEEEEecCcCcc-----------------
Q 012799 187 NPLS-GHKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSGHTLA----------------- 242 (456)
Q Consensus 187 ~~~~-~~~~~v~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~----------------- 242 (456)
.... .+... ..+.-.|.. .+..+++++. ++.|..+|..+++.+..+......
T Consensus 140 ~~~~~~~~~~-~~~~~~P~v---~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G 215 (571)
T 2ad6_A 140 EVEVCDPKVG-STLTQAPFV---AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG 215 (571)
T ss_dssp EEECCCGGGT-CBCCSCCEE---ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EecCCCCCcc-ceeccCCEE---ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccc
Confidence 3221 11100 011111211 1235555554 799999999999988776432110
Q ss_pred ---------------------EEEEEeCCCC-eEEEEeCC----------------CcEEEEECCCCeEEEEeec
Q 012799 243 ---------------------VTCVKWGGDG-VIYTGSQD----------------CTIKVWETTQGKLIRELKG 279 (456)
Q Consensus 243 ---------------------v~~~~~~~~~-~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~ 279 (456)
...++++++. .++.+..+ +.|..+|.++|+.+..++.
T Consensus 216 ~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~ 290 (571)
T 2ad6_A 216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQK 290 (571)
T ss_dssp CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEES
T ss_pred ccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecC
Confidence 0124555543 66665532 3599999999998887764
No 246
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.93 E-value=2.3e-07 Score=88.70 Aligned_cols=158 Identities=13% Similarity=0.095 Sum_probs=98.0
Q ss_pred CCeEEEEEC-CCcEEEEeC-CCCcceeEEecCCCC-----------EEEEEEcCCCCE----EEEEeCCCeEEEEeCCCC
Q 012799 120 GRQLASGSG-DTTVRLWDL-NTQTPMFKCTGHKNW-----------VLCIAWSADGKH----LVSGSKAGELQCWDPQTG 182 (456)
Q Consensus 120 ~~~l~~~~~-d~~v~vwd~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~----l~s~~~dg~i~vwd~~~~ 182 (456)
+..++.++. ++.|.-+|. .+++.+.++...... ...+++.|.+.. |+.++.|+.+..+|.++|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 445666666 889999999 899988776532210 123455444444 888889999999999999
Q ss_pred CCccccccCcccceEEEEecccccCCCCCEEEEEe------CCCcEEEEECCCCeEEEEecCcCcc--------------
Q 012799 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS------KDGDARIWDVSLRKCVICLSGHTLA-------------- 242 (456)
Q Consensus 183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~-------------- 242 (456)
+.+..........-..+.-.|.- .+..+++++ .+|.|+.+|.++++.+..+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v---~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~ 218 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYV---VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEE---ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CEEEeecCCCCCccceeecCCEE---ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence 87643221110000011111111 123555555 3799999999999988776432111
Q ss_pred -----------------------E-EEEEeCCCC-eEEEEeCC----------------CcEEEEECCCCeEEEEeecC
Q 012799 243 -----------------------V-TCVKWGGDG-VIYTGSQD----------------CTIKVWETTQGKLIRELKGH 280 (456)
Q Consensus 243 -----------------------v-~~~~~~~~~-~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~ 280 (456)
+ ..+++.++. .++.+..+ +.|..+|.++|+.+..++..
T Consensus 219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 0 123444544 67776655 37999999999998877653
No 247
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.92 E-value=2.2e-07 Score=90.96 Aligned_cols=117 Identities=17% Similarity=0.185 Sum_probs=74.3
Q ss_pred EEEECC-CCCeEEEEECCC-----------cEEEEeCCCCcce--eEEe-cCCCCEEEEEEcCCCCEEEEEeC-CCeEEE
Q 012799 113 SVAFSP-DGRQLASGSGDT-----------TVRLWDLNTQTPM--FKCT-GHKNWVLCIAWSADGKHLVSGSK-AGELQC 176 (456)
Q Consensus 113 ~~~~s~-~~~~l~~~~~d~-----------~v~vwd~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~s~~~-dg~i~v 176 (456)
++++.+ ++++++.|+.+. .+.+||..+++-. ..+. .+.....++++..++++++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456677 889999887543 5889998876532 2222 23334445778889999999985 457999
Q ss_pred EeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEe-CC-----CcEEEEECCCCeEEE
Q 012799 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KD-----GDARIWDVSLRKCVI 234 (456)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~-~d-----g~i~iwd~~~~~~~~ 234 (456)
||..+++-...........-.++...+ +++.++.|+ .+ ..+.+||..+.+-..
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~-----dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~ 328 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMS-----DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS 328 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECT-----TSCEEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred ecCcCCceeECCCCCccccccceEEec-----CCeEEEEeCcccCCcccccceEeCCCCCccee
Confidence 998876432211111111112333444 778899988 34 569999998876443
No 248
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.90 E-value=5.3e-07 Score=76.10 Aligned_cols=161 Identities=11% Similarity=0.035 Sum_probs=106.5
Q ss_pred ceEEEEecccccCCCCCEEEEEeC--CCcEEEEECCCCeEEEEecCcC-ccEEEEEeCCCCeEEEEeCCCcEEEEECCCC
Q 012799 195 WITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVICLSGHT-LAVTCVKWGGDGVIYTGSQDCTIKVWETTQG 271 (456)
Q Consensus 195 ~v~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 271 (456)
....+.|++ ++..+++.+. ++.|.++|+.+++.+..+.-.. .....+++..+...++.-.++.+.++|..+.
T Consensus 22 f~~Gl~~~~-----dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~ 96 (266)
T 2iwa_A 22 FTQGLVYAE-----NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTL 96 (266)
T ss_dssp CEEEEEECS-----TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTT
T ss_pred CcccEEEeC-----CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCC
Confidence 356888877 6645554443 5799999999999888764222 2234566664324444456789999999999
Q ss_pred eEEEEeecC-CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC
Q 012799 272 KLIRELKGH-GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK 350 (456)
Q Consensus 272 ~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 350 (456)
+.+.++... ... ..++++ +..++.+..++.|.++|..+.+
T Consensus 97 ~v~~~i~~g~~~g---~glt~D------------------------------------g~~l~vs~gs~~l~viD~~t~~ 137 (266)
T 2iwa_A 97 SNIKNFTHQMKDG---WGLATD------------------------------------GKILYGSDGTSILYEIDPHTFK 137 (266)
T ss_dssp EEEEEEECCSSSC---CEEEEC------------------------------------SSSEEEECSSSEEEEECTTTCC
T ss_pred cEEEEEECCCCCe---EEEEEC------------------------------------CCEEEEECCCCeEEEEECCCCc
Confidence 999888643 211 223333 3345666678899999976654
Q ss_pred CCcccccc-cc---ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799 351 QPKTRMTG-HQ---QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG 400 (456)
Q Consensus 351 ~~~~~~~~-~~---~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 400 (456)
.......+ +. ..++.+.|. +|+..+....++.|.+.|..+++.+..+..
T Consensus 138 v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~ 190 (266)
T 2iwa_A 138 LIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILL 190 (266)
T ss_dssp EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEEC
T ss_pred EEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEEC
Confidence 33322222 11 136678887 776555555678999999999999988874
No 249
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.89 E-value=2.4e-06 Score=75.00 Aligned_cols=227 Identities=12% Similarity=0.055 Sum_probs=128.9
Q ss_pred ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCCCcc
Q 012799 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA--GELQCWDPQTGKPSG 186 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~ 186 (456)
.....++|+++|+++++-..++.|..||.... ....+. ....+..+++.++|+++++.... ..|..++..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 45678999999997777667889999997653 333332 34578999999999966655432 247777777766432
Q ss_pred ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeE-EEEec---------CcCccEEEEEeCCCC-eEE
Q 012799 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICLS---------GHTLAVTCVKWGGDG-VIY 255 (456)
Q Consensus 187 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~---------~~~~~v~~~~~~~~~-~l~ 255 (456)
............++..+ ++..+++-..++.|+.+|...++. +.... ..-.....+ ++++ .++
T Consensus 110 ~~~~~~~~~~~g~~~~~-----~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ly 182 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLS-----DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLY 182 (306)
T ss_dssp EEECTTCSCEEEEEESS-----SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEE
T ss_pred EEeCCCccccCcccccC-----CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEE
Confidence 11111112223333322 333444444588999999876532 21110 111234455 5565 444
Q ss_pred -EEeCCCcEEEEECCC-CeE--EEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCE
Q 012799 256 -TGSQDCTIKVWETTQ-GKL--IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331 (456)
Q Consensus 256 -~~~~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (456)
+-...+.|..||+.. ++. ...+.. ......+++.++ ++.
T Consensus 183 v~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~d------------------------------------G~l 225 (306)
T 2p4o_A 183 VSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVE------------------------------------GNL 225 (306)
T ss_dssp EEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTT------------------------------------CCE
T ss_pred EEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCC------------------------------------CCE
Confidence 445567899999864 321 111110 012233444444 455
Q ss_pred EEEEeCCCcEEEEecCCCCCC-ccccccccccEeEEEEC---CCCCEEEEEECCC
Q 012799 332 LVSGSDDFTMFLWEPAVSKQP-KTRMTGHQQLVNHVYFS---PDGQWVASASFDK 382 (456)
Q Consensus 332 l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~s---p~~~~l~s~~~dg 382 (456)
+++....+.|.++|.. +... .......-...++++|. |+++.|+.++..+
T Consensus 226 ~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 226 YGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred EEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 6666667889999854 3211 11122223558999998 8887777666544
No 250
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.87 E-value=2.7e-06 Score=75.39 Aligned_cols=207 Identities=10% Similarity=0.037 Sum_probs=127.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccccc------------------CcccceEEEEecccccCCCCCE
Q 012799 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS------------------GHKKWITGISWEPVHLNAPCRR 212 (456)
Q Consensus 151 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~~~~~~ 212 (456)
....+++|.+++++++++..++.|..|+..++........ ........+++.+ +...
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~-----~~g~ 93 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL-----QNNQ 93 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET-----TTTE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcC-----CCCc
Confidence 4567789999998888888899999999876543210000 0123467788775 3446
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEe---cC-cCccEEEEEeCC-CCeEEEEeC------------------CCcEEEEECC
Q 012799 213 FVSASKDGDARIWDVSLRKCVICL---SG-HTLAVTCVKWGG-DGVIYTGSQ------------------DCTIKVWETT 269 (456)
Q Consensus 213 l~~~~~dg~i~iwd~~~~~~~~~~---~~-~~~~v~~~~~~~-~~~l~~~~~------------------dg~i~iwd~~ 269 (456)
|+++...+.|..+|..++...... .+ .......+++.+ +|.++.+.. +|.|..||..
T Consensus 94 l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 94 LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 666666666888887755422211 11 123468899999 885555543 3678889987
Q ss_pred CCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEE-EEEeCCCcEEEEecCC
Q 012799 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VSGSDDFTMFLWEPAV 348 (456)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~ 348 (456)
+++...... .......++++++ ++.+ ++-...+.|..|++..
T Consensus 174 ~~~~~~~~~-~~~~p~gia~~~d------------------------------------g~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 174 TKETTLLLK-ELHVPGGAEVSAD------------------------------------SSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp TTEEEEEEE-EESCCCEEEECTT------------------------------------SSEEEEEEGGGTEEEEEESSS
T ss_pred CCEEEEecc-CCccCcceEECCC------------------------------------CCEEEEEeCCCCeEEEEECCC
Confidence 766433222 1223456777776 4434 4445678999999764
Q ss_pred CCC-CccccccccccEeEEEECCCCCEEEEEEC----------CCcEEEEeCCCCeEEEEEecc
Q 012799 349 SKQ-PKTRMTGHQQLVNHVYFSPDGQWVASASF----------DKSIKLWNGTTGKFVAVFRGH 401 (456)
Q Consensus 349 ~~~-~~~~~~~~~~~v~~~~~sp~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~ 401 (456)
... ....+....+ ...++++++|++.++... .+.|..+|. .++.+..+...
T Consensus 217 ~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~ 278 (322)
T 2fp8_A 217 PKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLP 278 (322)
T ss_dssp TTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECC
T ss_pred CcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECC
Confidence 221 1111111123 778999999987666544 467888886 57777666543
No 251
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.87 E-value=6.1e-07 Score=85.82 Aligned_cols=152 Identities=12% Similarity=0.071 Sum_probs=93.7
Q ss_pred CCeEEEEECCCcEEEEeCCCCcceeEEecCC----CCEEE-EEEcCCCCEEEEEeC------CCeEEEEeCCCCCCcccc
Q 012799 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHK----NWVLC-IAWSADGKHLVSGSK------AGELQCWDPQTGKPSGNP 188 (456)
Q Consensus 120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~----~~v~~-~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~ 188 (456)
+..++.++.|+.+..+|..+++.+....... ..+.+ .... ++ .+++++. ++.|..+|.++|+.+.+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 5567888889999999999999887765221 01111 1111 34 5555554 789999999999865422
Q ss_pred ccCccc------------------------------------ce-EEEEecccccCCCCCEEEEEeCC------------
Q 012799 189 LSGHKK------------------------------------WI-TGISWEPVHLNAPCRRFVSASKD------------ 219 (456)
Q Consensus 189 ~~~~~~------------------------------------~v-~~~~~~~~~~~~~~~~l~~~~~d------------ 219 (456)
...... .+ ..+++.+ ....++.+..+
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~-----~~g~vy~~~g~~~~~~~~~~~gd 267 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-----KLNLFYYGSGNPAPWNETMRPGD 267 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-----TTTEEEEECCCCSCSCGGGSCSC
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcC-----CCCeEEEECCCCccccCCccCCC
Confidence 111000 00 1123333 34556555432
Q ss_pred ----CcEEEEECCCCeEEEEecCc----------CccEEEEEeCCCC----eEEEEeCCCcEEEEECCCCeEEEEeec
Q 012799 220 ----GDARIWDVSLRKCVICLSGH----------TLAVTCVKWGGDG----VIYTGSQDCTIKVWETTQGKLIRELKG 279 (456)
Q Consensus 220 ----g~i~iwd~~~~~~~~~~~~~----------~~~v~~~~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~ 279 (456)
+.|..+|..+++.+..+... ..++. +....+| .++.++.+|.++++|..+|+.+.....
T Consensus 268 ~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~ 344 (571)
T 2ad6_A 268 NKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV 344 (571)
T ss_dssp CTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred ceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecc
Confidence 35999999999988776432 12221 2222345 366788899999999999998877653
No 252
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.86 E-value=1.2e-05 Score=80.55 Aligned_cols=240 Identities=14% Similarity=0.056 Sum_probs=148.0
Q ss_pred ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe-------cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 012799 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-------GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 181 (456)
..|.++...++|.+.+ |+.+ -+.+||..+++...... .....|.++...++|. |..|+..+-|.++|..+
T Consensus 211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCC
Confidence 5699999998887555 4455 58999987654332111 1245699999887775 55666645688888876
Q ss_pred CCCccccc-------------cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec---------Cc
Q 012799 182 GKPSGNPL-------------SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---------GH 239 (456)
Q Consensus 182 ~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~ 239 (456)
+....... .-....|.++...+ +| .+..|+.++-|..++........... ..
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~-----~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~ 361 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS-----FN-NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLS 361 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECS-----SC-CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCS
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC-----CC-CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCC
Confidence 65321110 11234677877665 44 46677877889999887654332211 12
Q ss_pred CccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEe---ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHH
Q 012799 240 TLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL---KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316 (456)
Q Consensus 240 ~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (456)
...|.++...++|.|..|+.++-|..||..+++..... ......|.++...++
T Consensus 362 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~------------------------ 417 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSE------------------------ 417 (781)
T ss_dssp SSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTT------------------------
T ss_pred CcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCC------------------------
Confidence 35699999999898888887777999998754332111 112344666655443
Q ss_pred HHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccc-ccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEE
Q 012799 317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395 (456)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~ 395 (456)
..|..|+.++-+..+|..+........ ......|.++...++|++.+ |+. +.+..||..+++..
T Consensus 418 -------------g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~ 482 (781)
T 3v9f_A 418 -------------GNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVI 482 (781)
T ss_dssp -------------SCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCC
T ss_pred -------------CCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEE
Confidence 236778877788889865432111110 12345799999988887544 455 55899998776554
Q ss_pred E
Q 012799 396 A 396 (456)
Q Consensus 396 ~ 396 (456)
.
T Consensus 483 ~ 483 (781)
T 3v9f_A 483 H 483 (781)
T ss_dssp E
T ss_pred e
Confidence 3
No 253
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.86 E-value=4.9e-06 Score=73.02 Aligned_cols=210 Identities=12% Similarity=0.069 Sum_probs=122.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC--cEEEEECC
Q 012799 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG--DARIWDVS 228 (456)
Q Consensus 151 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~ 228 (456)
.....++|+++++++++-..++.|..||....... ..........+++.+ +++.+++..... .|..+|..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~---~~~~~~~p~gia~~~-----dG~l~vad~~~~~~~v~~~d~~ 103 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQI---HATVEGKVSGLAFTS-----NGDLVATGWNADSIPVVSLVKS 103 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEE---EEECSSEEEEEEECT-----TSCEEEEEECTTSCEEEEEECT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEE---EEeCCCCceeEEEcC-----CCcEEEEeccCCcceEEEEcCC
Confidence 56788999999987777667899999998753221 111234577888887 787665554322 47777777
Q ss_pred CCeEEEEec-CcCccEEEEEeCCCCeEEEEe-CCCcEEEEECCCCeE-EEEeec---------CCcceEEEEecCcceee
Q 012799 229 LRKCVICLS-GHTLAVTCVKWGGDGVIYTGS-QDCTIKVWETTQGKL-IRELKG---------HGHWVNSLALSTEYALR 296 (456)
Q Consensus 229 ~~~~~~~~~-~~~~~v~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~---------~~~~i~~~~~~~~~~~~ 296 (456)
+++...... ........++..+++.+++.. .++.|..+|..+++. +..... .....+.+ +++
T Consensus 104 ~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~d---- 177 (306)
T 2p4o_A 104 DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRF---- 177 (306)
T ss_dssp TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEE----
T ss_pred CCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcC----
Confidence 776543222 112233455555566555444 588999999876532 211110 00011222 222
Q ss_pred eccccCCCCccCChHHHHHHHHhhhhhccCCCCC-EEEEEeCCCcEEEEecCCCCCC--ccccccccccEeEEEECCCCC
Q 012799 297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE-RLVSGSDDFTMFLWEPAVSKQP--KTRMTGHQQLVNHVYFSPDGQ 373 (456)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~sp~~~ 373 (456)
+. .+++-...+.|..||+...... ...+. .......++++++|+
T Consensus 178 --------------------------------g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~ 224 (306)
T 2p4o_A 178 --------------------------------GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGN 224 (306)
T ss_dssp --------------------------------TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCC
T ss_pred --------------------------------CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCC
Confidence 33 3455566789999997642211 11111 113456789999999
Q ss_pred EEEEEECCCcEEEEeCCCCeEEEE--EecccccEEEE
Q 012799 374 WVASASFDKSIKLWNGTTGKFVAV--FRGHVGPVYQI 408 (456)
Q Consensus 374 ~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~i 408 (456)
+.++....+.|.++|.. |+.... +........++
T Consensus 225 l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~ 260 (306)
T 2p4o_A 225 LYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAV 260 (306)
T ss_dssp EEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEE
T ss_pred EEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEE
Confidence 88777778899999964 665332 22222346667
No 254
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.85 E-value=2.4e-05 Score=78.36 Aligned_cols=240 Identities=11% Similarity=0.095 Sum_probs=149.9
Q ss_pred cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe--------------cCCCCEEEEEEcCCCCEEEEEeCCCe
Q 012799 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT--------------GHKNWVLCIAWSADGKHLVSGSKAGE 173 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~s~~~dg~ 173 (456)
...|.++...++|. |..|+..+-|.+++..++....... -....|.++...++|. |..|+.++-
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 45799999988887 4456664568899987654322111 1345799999988776 666777777
Q ss_pred EEEEeCCCCCCccccc--------cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe---cCcCcc
Q 012799 174 LQCWDPQTGKPSGNPL--------SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SGHTLA 242 (456)
Q Consensus 174 i~vwd~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~ 242 (456)
|..++..++....... .-....|.++...+ ++ .+..|+.++-|..||..++...... ......
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-----~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~ 408 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG-----QG-KLWIGTDGGGINVFENGKRVAIYNKENRELLSNS 408 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT-----TS-CEEEEEBSSCEEEEETTEEEEECC-----CCCSB
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC-----CC-CEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcc
Confidence 8889877654321100 11234578887655 44 4667776777999998755432211 123467
Q ss_pred EEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEee--cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhh
Q 012799 243 VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320 (456)
Q Consensus 243 v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (456)
|.++...+++.|.+|+.++-+..+|..+++...... .....|.++...++
T Consensus 409 v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~---------------------------- 460 (781)
T 3v9f_A 409 VLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKN---------------------------- 460 (781)
T ss_dssp EEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTT----------------------------
T ss_pred eEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCC----------------------------
Confidence 999999988888888887789999988775433221 12345666666554
Q ss_pred hhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccc-c---cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeE
Q 012799 321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM-T---GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF 394 (456)
Q Consensus 321 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~---~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~ 394 (456)
..+..|+. +-+..||..+........ . .....|.++...++|++.+ |+.++-+..||..+++.
T Consensus 461 ---------g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~ 527 (781)
T 3v9f_A 461 ---------KKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLV 527 (781)
T ss_dssp ---------SEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEE
T ss_pred ---------CCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeE
Confidence 23666666 568889865433211111 0 1135799999999988654 44444488899776653
No 255
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.81 E-value=1.9e-06 Score=71.77 Aligned_cols=170 Identities=15% Similarity=0.112 Sum_probs=117.8
Q ss_pred EEEEEECCCCCeEEEEECCC--cEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCCccc
Q 012799 111 VLSVAFSPDGRQLASGSGDT--TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTGKPSGN 187 (456)
Q Consensus 111 V~~~~~s~~~~~l~~~~~d~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~ 187 (456)
...+.|+ ++.++.+.+.+| .|+++|+.+++.+..+.-.. ........++++.|.... .++.+.+||.++.+.+.+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence 4788998 677777777665 89999999999988876433 333322233455555544 588999999999887664
Q ss_pred cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCc--C---ccEEEEEeCCCCeEEEEe-CCC
Q 012799 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH--T---LAVTCVKWGGDGVIYTGS-QDC 261 (456)
Q Consensus 188 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~---~~v~~~~~~~~~~l~~~~-~dg 261 (456)
...+.. -..+++ ++..|+.+..++.|.++|..+.+.+..+.-. . ..++.+.|. +|.+++.. .++
T Consensus 123 i~~~~e--G~glt~-------dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~ 192 (262)
T 3nol_A 123 FNYDGE--GWGLTH-------NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTN 192 (262)
T ss_dssp EECSSC--CCCEEE-------CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSS
T ss_pred EECCCC--ceEEec-------CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCC
Confidence 333221 123332 6677777766788999999998888776532 1 334567776 67666655 578
Q ss_pred cEEEEECCCCeEEEEeecC------------CcceEEEEecCc
Q 012799 262 TIKVWETTQGKLIRELKGH------------GHWVNSLALSTE 292 (456)
Q Consensus 262 ~i~iwd~~~~~~~~~~~~~------------~~~i~~~~~~~~ 292 (456)
.|.+.|..+++.+..+... ....+.|+++|+
T Consensus 193 ~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~ 235 (262)
T 3nol_A 193 KIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKE 235 (262)
T ss_dssp EEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETT
T ss_pred eEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCC
Confidence 9999999999998888642 124577888886
No 256
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.81 E-value=1.4e-06 Score=83.28 Aligned_cols=162 Identities=14% Similarity=0.145 Sum_probs=97.2
Q ss_pred EEECCCCCe----EEEEECCCcEEEEeCCCCcceeEEecCC----CCEEE-EEEcCCCCEEEEEe------CCCeEEEEe
Q 012799 114 VAFSPDGRQ----LASGSGDTTVRLWDLNTQTPMFKCTGHK----NWVLC-IAWSADGKHLVSGS------KAGELQCWD 178 (456)
Q Consensus 114 ~~~s~~~~~----l~~~~~d~~v~vwd~~~~~~~~~~~~~~----~~v~~-~~~~~~~~~l~s~~------~dg~i~vwd 178 (456)
++++|.+.. ++.++.|+.+..+|..+++.+....... ..+.+ .... ++ .+++++ .+|.|..+|
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D 188 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYD 188 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEE
Confidence 445444444 7888899999999999999887754321 01111 1111 44 455554 379999999
Q ss_pred CCCCCCccccccCccc-------------ce-------------------EEEEecccccCCCCCEEEEEeCC-------
Q 012799 179 PQTGKPSGNPLSGHKK-------------WI-------------------TGISWEPVHLNAPCRRFVSASKD------- 219 (456)
Q Consensus 179 ~~~~~~~~~~~~~~~~-------------~v-------------------~~~~~~~~~~~~~~~~l~~~~~d------- 219 (456)
.++|+.+.+....... ++ ..-.|....+......++.+..+
T Consensus 189 ~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~ 268 (599)
T 1w6s_A 189 VKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNET 268 (599)
T ss_dssp TTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGG
T ss_pred CCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCc
Confidence 9999865422211100 00 00011111111255667766654
Q ss_pred ---------CcEEEEECCCCeEEEEecCcC----------ccEEEEEeC-CCC----eEEEEeCCCcEEEEECCCCeEEE
Q 012799 220 ---------GDARIWDVSLRKCVICLSGHT----------LAVTCVKWG-GDG----VIYTGSQDCTIKVWETTQGKLIR 275 (456)
Q Consensus 220 ---------g~i~iwd~~~~~~~~~~~~~~----------~~v~~~~~~-~~~----~l~~~~~dg~i~iwd~~~~~~~~ 275 (456)
+.|..+|.++++.+..++... .++. +... .+| .++.++.+|.++++|.++|+.+.
T Consensus 269 ~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 269 MRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp GSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 379999999999887765321 1222 2221 344 46668899999999999999887
Q ss_pred Eee
Q 012799 276 ELK 278 (456)
Q Consensus 276 ~~~ 278 (456)
...
T Consensus 348 ~~~ 350 (599)
T 1w6s_A 348 ANK 350 (599)
T ss_dssp EEE
T ss_pred ccc
Confidence 765
No 257
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.79 E-value=1e-07 Score=88.90 Aligned_cols=232 Identities=13% Similarity=0.038 Sum_probs=150.2
Q ss_pred CCCCeEEEEEC-CCcEEEEeCCCCcceeEEec-CCCCEEEEEE-c-CCCCEEEEEe------------------CCCeEE
Q 012799 118 PDGRQLASGSG-DTTVRLWDLNTQTPMFKCTG-HKNWVLCIAW-S-ADGKHLVSGS------------------KAGELQ 175 (456)
Q Consensus 118 ~~~~~l~~~~~-d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~l~s~~------------------~dg~i~ 175 (456)
+||++++.... ++.|.+.|+.+.+....+.- ....+..+++ + |+++++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 38888877664 55799999999987774432 3355888888 5 8999999885 245799
Q ss_pred EEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCC-----------------------------------
Q 012799 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG----------------------------------- 220 (456)
Q Consensus 176 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg----------------------------------- 220 (456)
+.|.++.+...+...+. ....++.+| +|+++++.+.+.
T Consensus 179 vID~~t~~v~~qI~Vgg--~pd~~~~sp-----dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~ 251 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG--NLDNCDADY-----EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ 251 (595)
T ss_dssp EEETTTTEEEEEEEESS--CCCCEEECS-----SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred EEECCCCeEEEEEEeCC--CccceEECC-----CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence 99999877655333221 234455666 777777766443
Q ss_pred ---cEEEEECCC--CeE-EEEecCcCccEEEEEeCCCC--eEEEEeCCCcEEEEECCCCe------------EEEEeecC
Q 012799 221 ---DARIWDVSL--RKC-VICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGK------------LIRELKGH 280 (456)
Q Consensus 221 ---~i~iwd~~~--~~~-~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~------------~~~~~~~~ 280 (456)
.|.+.|..+ ++. +..+.. .....++.++||| .++++..+.+|.++|+.+.+ ....+. -
T Consensus 252 ~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-v 329 (595)
T 1fwx_A 252 ELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-L 329 (595)
T ss_dssp EETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-C
T ss_pred EECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-C
Confidence 366777766 433 333322 2345678999999 44445568899999998653 233333 3
Q ss_pred CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCC---------CC
Q 012799 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS---------KQ 351 (456)
Q Consensus 281 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---------~~ 351 (456)
+.....++|+++ +...++...|+.|.+||+... ..
T Consensus 330 G~gP~h~aF~~d------------------------------------G~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~ 373 (595)
T 1fwx_A 330 GLGPLHTAFDGR------------------------------------GNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDP 373 (595)
T ss_dssp CSCEEEEEECTT------------------------------------SEEEEEETTTTEEEEEEHHHHHHHHHTCSCCC
T ss_pred CCCcceEEECCC------------------------------------CeEEEEEecCCcEEEEEhhHhhhhhcccccce
Confidence 445677888887 333566778999999997651 23
Q ss_pred Ccccccccccc-----EeEEEECCCCCEEEEEEC---CCc----------EEEEeCCCCeE
Q 012799 352 PKTRMTGHQQL-----VNHVYFSPDGQWVASASF---DKS----------IKLWNGTTGKF 394 (456)
Q Consensus 352 ~~~~~~~~~~~-----v~~~~~sp~~~~l~s~~~---dg~----------i~iwd~~~~~~ 394 (456)
.+.++..|..+ -..+.++|||++|+++.. |+. -.++|+..+++
T Consensus 374 vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 374 IKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp EEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred eEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 33344333322 123356899999998753 432 28899965553
No 258
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.79 E-value=1.1e-06 Score=73.17 Aligned_cols=168 Identities=13% Similarity=0.133 Sum_probs=117.6
Q ss_pred EEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCE--EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 012799 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV--LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (456)
Q Consensus 111 V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 188 (456)
...+.|+ ++.++.+.+.+|.|+++|+.+++.+..+ -. ... ..+++.. +++.+..-.++.+.+||.++.+.+.++
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 4678887 4566777778889999999999988877 22 233 3355532 334444556889999999998876643
Q ss_pred ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcC-----ccEEEEEeCCCCeEEEEe-CCCc
Q 012799 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT-----LAVTCVKWGGDGVIYTGS-QDCT 262 (456)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~l~~~~-~dg~ 262 (456)
... ..-..+++ ++..|+.+..++.|.++|..+.+.+..+.-.. ..++.+.|. +|.+++.. .++.
T Consensus 133 ~~~--~eGwGLt~-------Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~ 202 (268)
T 3nok_A 133 RYS--GEGWGLCY-------WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSD 202 (268)
T ss_dssp ECS--SCCCCEEE-------ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSE
T ss_pred eCC--CceeEEec-------CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCe
Confidence 332 22234443 56777777778999999999998887765322 245667777 66666655 5789
Q ss_pred EEEEECCCCeEEEEeecC-------------CcceEEEEecCc
Q 012799 263 IKVWETTQGKLIRELKGH-------------GHWVNSLALSTE 292 (456)
Q Consensus 263 i~iwd~~~~~~~~~~~~~-------------~~~i~~~~~~~~ 292 (456)
|.+.|..+++.+..+... ....+.|+++|+
T Consensus 203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~ 245 (268)
T 3nok_A 203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG 245 (268)
T ss_dssp EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCC
Confidence 999999999998887532 134578888886
No 259
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.78 E-value=2.4e-06 Score=81.86 Aligned_cols=159 Identities=19% Similarity=0.199 Sum_probs=96.3
Q ss_pred CCeEEEEECCCcEEEEeCCCCcceeEEecCCC----CEE-EEEEcC---CCC-EEEEEe------CCCeEEEEeCCCCCC
Q 012799 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN----WVL-CIAWSA---DGK-HLVSGS------KAGELQCWDPQTGKP 184 (456)
Q Consensus 120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~----~v~-~~~~~~---~~~-~l~s~~------~dg~i~vwd~~~~~~ 184 (456)
+..++.++.|+.|..+|..+++.+........ .+. ...... +++ .+++++ .+|.|..+|.++|+.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 45677888999999999999998877653220 111 111111 233 555554 378999999999986
Q ss_pred ccccccCcccce------------------------------------EEEEecccccCCCCCEEEEEeC----------
Q 012799 185 SGNPLSGHKKWI------------------------------------TGISWEPVHLNAPCRRFVSASK---------- 218 (456)
Q Consensus 185 ~~~~~~~~~~~v------------------------------------~~~~~~~~~~~~~~~~l~~~~~---------- 218 (456)
+...... ...+ -...|.+..+++....++.+..
T Consensus 197 ~W~~~~~-~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 197 IWMRPFV-EGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EEEEESS-TTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred EeecCCC-ccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence 5422110 0000 0001111122224556666553
Q ss_pred ----------C----CcEEEEECCCCeEEEEecC--cC--------ccEEEEEeC-CCC----eEEEEeCCCcEEEEECC
Q 012799 219 ----------D----GDARIWDVSLRKCVICLSG--HT--------LAVTCVKWG-GDG----VIYTGSQDCTIKVWETT 269 (456)
Q Consensus 219 ----------d----g~i~iwd~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~----~l~~~~~dg~i~iwd~~ 269 (456)
| +.|..+|..+++.+..++. |. .++. +... .+| .++.++.+|.++++|..
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~ 354 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRS 354 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETT
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECC
Confidence 2 5899999999999887743 21 1222 2221 344 57788999999999999
Q ss_pred CCeEEEEeecC
Q 012799 270 QGKLIRELKGH 280 (456)
Q Consensus 270 ~~~~~~~~~~~ 280 (456)
+|+.+..+...
T Consensus 355 tG~~lw~~~~~ 365 (582)
T 1flg_A 355 NGKLQNAFPFV 365 (582)
T ss_dssp TCCEEEEEESS
T ss_pred CCCEecccccc
Confidence 99998877643
No 260
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.77 E-value=2.6e-06 Score=81.60 Aligned_cols=115 Identities=10% Similarity=-0.003 Sum_probs=67.6
Q ss_pred CeEEEEECCCcEEEEeCCCCcceeEEecCCCC---------EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccC
Q 012799 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW---------VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSG 191 (456)
Q Consensus 121 ~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 191 (456)
..++.++.++.|.-+|..+++.+.++...... ...++. .+..++.++.|+.|..+|.++|+.+......
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 34555555445999999999988877643221 011222 3557888889999999999999876432211
Q ss_pred cccceEEEEecccccC--CCCC-EEEEEe------CCCcEEEEECCCCeEEEEec
Q 012799 192 HKKWITGISWEPVHLN--APCR-RFVSAS------KDGDARIWDVSLRKCVICLS 237 (456)
Q Consensus 192 ~~~~v~~~~~~~~~~~--~~~~-~l~~~~------~dg~i~iwd~~~~~~~~~~~ 237 (456)
....-..+.-.|.-.. .+++ .+++++ .+|.|+.+|..+++.+....
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~ 201 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP 201 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecC
Confidence 1000000001111000 0222 555554 37899999999999887653
No 261
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.74 E-value=1.6e-06 Score=72.18 Aligned_cols=159 Identities=15% Similarity=0.136 Sum_probs=104.0
Q ss_pred eEEEEecccccCCCCCEEEEEeCCC--cEEEEECCCCeEEEEecCcCcc-EEEEEeCCCCeEEEEeCCCcEEEEECCCCe
Q 012799 196 ITGISWEPVHLNAPCRRFVSASKDG--DARIWDVSLRKCVICLSGHTLA-VTCVKWGGDGVIYTGSQDCTIKVWETTQGK 272 (456)
Q Consensus 196 v~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 272 (456)
...+.|+ ++..+.+.+.+| .|+.+|+.+++.+..+.-.... -..++...+...++.-.++.+.+||..+.+
T Consensus 45 tqGL~~~------~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 45 TEGFFYR------NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEEEEE------TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCC
T ss_pred cceEEEE------CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCc
Confidence 3566664 345666777766 8999999999988877543322 233555544334444458899999999999
Q ss_pred EEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCC
Q 012799 273 LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP 352 (456)
Q Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 352 (456)
.+.++...... ..++ ++ +..|+.+..++.|.++|..+.+..
T Consensus 119 ~~~ti~~~~eG-~glt--~d------------------------------------g~~L~~SdGs~~i~~iDp~T~~v~ 159 (262)
T 3nol_A 119 QVRSFNYDGEG-WGLT--HN------------------------------------DQYLIMSDGTPVLRFLDPESLTPV 159 (262)
T ss_dssp EEEEEECSSCC-CCEE--EC------------------------------------SSCEEECCSSSEEEEECTTTCSEE
T ss_pred EEEEEECCCCc-eEEe--cC------------------------------------CCEEEEECCCCeEEEEcCCCCeEE
Confidence 99988753321 1222 22 344666666788999997665433
Q ss_pred ccccc---ccc-ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799 353 KTRMT---GHQ-QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG 400 (456)
Q Consensus 353 ~~~~~---~~~-~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 400 (456)
..... +.. ..++.+.|. +|++.+..-.++.|.+.|..+|+.+..+..
T Consensus 160 ~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 160 RTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp EEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred EEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence 22111 111 234557776 776665555688999999999999988864
No 262
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.73 E-value=3.4e-06 Score=70.27 Aligned_cols=158 Identities=15% Similarity=0.106 Sum_probs=106.1
Q ss_pred eEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCc-cEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEE
Q 012799 196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL-AVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLI 274 (456)
Q Consensus 196 v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 274 (456)
...+.|+ ++.++.+.+.+|.|+.+|+.+++.+..+ -... .-..++...+...++.-.++.+.+||..+.+.+
T Consensus 57 tqGL~~~------~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 57 TQGLVFH------QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp EEEEEEE------TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEE
T ss_pred cceEEEE------CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEE
Confidence 3566664 3457777888899999999999887776 2222 223466665545555557899999999999999
Q ss_pred EEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcc
Q 012799 275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354 (456)
Q Consensus 275 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 354 (456)
.++...... ..++ ++ +..|+.+..++.|.++|..+.+....
T Consensus 130 ~ti~~~~eG-wGLt--~D------------------------------------g~~L~vSdGs~~l~~iDp~T~~v~~~ 170 (268)
T 3nok_A 130 RTTRYSGEG-WGLC--YW------------------------------------NGKLVRSDGGTMLTFHEPDGFALVGA 170 (268)
T ss_dssp EEEECSSCC-CCEE--EE------------------------------------TTEEEEECSSSEEEEECTTTCCEEEE
T ss_pred EEEeCCCce-eEEe--cC------------------------------------CCEEEEECCCCEEEEEcCCCCeEEEE
Confidence 998753221 2222 22 44566666789999999766543222
Q ss_pred ccc-ccc---ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799 355 RMT-GHQ---QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG 400 (456)
Q Consensus 355 ~~~-~~~---~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 400 (456)
... .+. ..++.+.|. +|++.+..-.++.|.+.|..+|+.+..+..
T Consensus 171 I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 171 VQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDA 219 (268)
T ss_dssp EECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred EEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence 111 111 234667776 776555555688999999999999988864
No 263
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.73 E-value=2.5e-05 Score=69.79 Aligned_cols=258 Identities=10% Similarity=-0.014 Sum_probs=153.4
Q ss_pred cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCCCcc
Q 012799 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-SKAGELQCWDPQTGKPSG 186 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~ 186 (456)
.+..+|.+..+++ +|+.+ ....|+..++.......... ....+..++|++.+..|+.+ ...+.|..+++..+....
T Consensus 33 ~d~~~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 109 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 109 (349)
T ss_dssp TTSSCEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CCCCcccccccCc-eeEee-cccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE
Confidence 3444566666644 44443 34568888887655443333 44558899999866555544 457889999987665322
Q ss_pred ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE-eCC-CcE
Q 012799 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG-SQD-CTI 263 (456)
Q Consensus 187 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~-~~d-g~i 263 (456)
...........+++.+. .+..+++-...+.|.+.++........+.........++++|.+ .++.. ... +.|
T Consensus 110 -~~~~~~~~p~glavd~~----~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I 184 (349)
T 3v64_C 110 -VVSTGLESPGGLAVDWV----HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRI 184 (349)
T ss_dssp -EECSSCSCCCEEEEETT----TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred -EEeCCCCCccEEEEecC----CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEE
Confidence 22222233456777651 34445555567889999987554333343444567899999854 54444 344 788
Q ss_pred EEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEE
Q 012799 264 KVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL 343 (456)
Q Consensus 264 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 343 (456)
..+++........+.......+.++++++. +..+++-...+.|..
T Consensus 185 ~r~~~dG~~~~~~~~~~~~~PnGla~d~~~-----------------------------------~~lY~aD~~~~~I~~ 229 (349)
T 3v64_C 185 EASSMDGSGRRIIADTHLFWPNGLTIDYAG-----------------------------------RRMYWVDAKHHVIER 229 (349)
T ss_dssp EEEETTSCSCEESCCSSCSCEEEEEEETTT-----------------------------------TEEEEEETTTTEEEE
T ss_pred EEEeCCCCCcEEEEECCCCCcceEEEeCCC-----------------------------------CEEEEEECCCCEEEE
Confidence 888876543333223233456788888752 333555566778999
Q ss_pred EecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEEe
Q 012799 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410 (456)
Q Consensus 344 wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 410 (456)
+|+.... ..............+++ ..+.+.++-...+.|..++..+|+.+..+........++.+
T Consensus 230 ~~~dG~~-~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 294 (349)
T 3v64_C 230 ANLDGSH-RKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 294 (349)
T ss_dssp EETTSCS-CEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred EeCCCCc-eEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEeccCCCCCceEEE
Confidence 9865432 22222223345677887 34555556566788999987778777666543333344433
No 264
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.73 E-value=2.7e-06 Score=84.49 Aligned_cols=157 Identities=11% Similarity=0.070 Sum_probs=98.9
Q ss_pred CCcc-cEEEEEEC-CCCCeEEEEEC-CC----cEEEEeCCCC-ccee-EEecCCCCEEEEEEcCCCCEEEEEeCC-----
Q 012799 106 GHTE-AVLSVAFS-PDGRQLASGSG-DT----TVRLWDLNTQ-TPMF-KCTGHKNWVLCIAWSADGKHLVSGSKA----- 171 (456)
Q Consensus 106 ~h~~-~V~~~~~s-~~~~~l~~~~~-d~----~v~vwd~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~d----- 171 (456)
+|.- .+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+. .....++|+|||+.|+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRE 246 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCC
Confidence 4553 78899999 99998886643 22 4999999988 6322 111 113468999999988877665
Q ss_pred CeEEEEeCCCCCCccccc-c-CcccceEEEEecccccCCCCCEEEEEeC---CCcEEEEECCCC--eE-EEEe-cCcCcc
Q 012799 172 GELQCWDPQTGKPSGNPL-S-GHKKWITGISWEPVHLNAPCRRFVSASK---DGDARIWDVSLR--KC-VICL-SGHTLA 242 (456)
Q Consensus 172 g~i~vwd~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~--~~-~~~~-~~~~~~ 242 (456)
..|.++++.++......+ . ........+.|+| +|++|+..+. ...|+++|+.++ +. +..+ ......
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-----Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~ 321 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-----DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGV 321 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-----TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTC
T ss_pred CEEEEEECCCCchhcEEEEecCCCceEEEEEECC-----CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCc
Confidence 258888887764321111 1 2233456788988 9998887653 346888998775 23 1333 333445
Q ss_pred EEEEEeCCCCeEE-EEeCC----CcEEEEECCC
Q 012799 243 VTCVKWGGDGVIY-TGSQD----CTIKVWETTQ 270 (456)
Q Consensus 243 v~~~~~~~~~~l~-~~~~d----g~i~iwd~~~ 270 (456)
...+.|+..+.|+ ....+ ..|..+|+.+
T Consensus 322 ~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 322 RYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp CEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred eEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 5666655555444 43333 3577777764
No 265
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.68 E-value=0.00014 Score=63.89 Aligned_cols=234 Identities=12% Similarity=0.007 Sum_probs=139.6
Q ss_pred EEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCC---CCccccccCcccceEE
Q 012799 123 LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVS-GSKAGELQCWDPQTG---KPSGNPLSGHKKWITG 198 (456)
Q Consensus 123 l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg~i~vwd~~~~---~~~~~~~~~~~~~v~~ 198 (456)
|+.+. ...|+..|+.+.+....+. ....+..++|++.+..|+. -..++.|..+++... ................
T Consensus 4 ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 4 LFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 44443 3569999998776555443 4556889999986655554 455689999998761 2211122222234467
Q ss_pred EEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCC-CeEEEEeCC--CcEEEEECCCCeEEE
Q 012799 199 ISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQD--CTIKVWETTQGKLIR 275 (456)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d--g~i~iwd~~~~~~~~ 275 (456)
+++.+. .+..+++-...+.|.+++.........+.........++++|. +.++.+... +.|..+++... ...
T Consensus 82 lavd~~----~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~ 156 (316)
T 1ijq_A 82 LAVDWI----HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIY 156 (316)
T ss_dssp EEEETT----TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEE
T ss_pred EEEeec----CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeE
Confidence 777651 3344455566789999998755433333333456789999985 455555443 68888887643 333
Q ss_pred Ee-ecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcc
Q 012799 276 EL-KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354 (456)
Q Consensus 276 ~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 354 (456)
.+ ...-...+.++++++. +..+++-...+.|..+|+..... ..
T Consensus 157 ~~~~~~~~~P~gla~d~~~-----------------------------------~~lY~~D~~~~~I~~~d~dg~~~-~~ 200 (316)
T 1ijq_A 157 SLVTENIQWPNGITLDLLS-----------------------------------GRLYWVDSKLHSISSIDVNGGNR-KT 200 (316)
T ss_dssp EEECSSCSCEEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTSCSC-EE
T ss_pred EEEECCCCCceEEEEeccC-----------------------------------CEEEEEECCCCeEEEEecCCCce-EE
Confidence 33 2233456788888752 23345555677899999764322 11
Q ss_pred ccc--cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799 355 RMT--GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG 400 (456)
Q Consensus 355 ~~~--~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 400 (456)
... ..-.....+++. .+.++++-...+.|..++..+|+.+..+..
T Consensus 201 ~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~ 247 (316)
T 1ijq_A 201 ILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAE 247 (316)
T ss_dssp EEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred EeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEec
Confidence 111 112345677775 355566666678999999888877666654
No 266
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.68 E-value=3.1e-05 Score=70.23 Aligned_cols=254 Identities=11% Similarity=-0.003 Sum_probs=151.7
Q ss_pred EEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCCccccc
Q 012799 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPL 189 (456)
Q Consensus 111 V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~ 189 (456)
-.|.+..+.+ +|+.+ ....|+..++.......... ....+..++|.+.+..|+ +-...+.|..+++..+.... ..
T Consensus 79 ~~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-~~ 154 (386)
T 3v65_B 79 RSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-VV 154 (386)
T ss_dssp SCEEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE-EE
T ss_pred CeECCccccc-eeEee-cCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE-EE
Confidence 3455555533 44443 34578999987665444443 445688999998655555 44567889999987654322 12
Q ss_pred cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe-CC-CcEEEE
Q 012799 190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS-QD-CTIKVW 266 (456)
Q Consensus 190 ~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~d-g~i~iw 266 (456)
.........+++.+. .+..+++-...+.|.+.++........+.........++++|.+ .|+.+. .. +.|..+
T Consensus 155 ~~~~~~p~glavd~~----~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~ 230 (386)
T 3v65_B 155 STGLESPGGLAVDWV----HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEAS 230 (386)
T ss_dssp CSSCSCCCCEEEETT----TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred eCCCCCccEEEEEeC----CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEE
Confidence 222223455666651 33444555556788888876554333344444567899999855 555444 34 678888
Q ss_pred ECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEec
Q 012799 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP 346 (456)
Q Consensus 267 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 346 (456)
++................+.++++++. +..+++-...+.|..+|+
T Consensus 231 ~~dG~~~~~~~~~~~~~PnGlavd~~~-----------------------------------~~lY~aD~~~~~I~~~d~ 275 (386)
T 3v65_B 231 SMDGSGRRIIADTHLFWPNGLTIDYAG-----------------------------------RRMYWVDAKHHVIERANL 275 (386)
T ss_dssp ETTSCSCEEEECSSCSCEEEEEEEGGG-----------------------------------TEEEEEETTTTEEEEECT
T ss_pred eCCCCCcEEEEECCCCCeeeEEEeCCC-----------------------------------CEEEEEECCCCEEEEEeC
Confidence 886543333333334456788888652 333555566778999986
Q ss_pred CCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEE
Q 012799 347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIR 409 (456)
Q Consensus 347 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 409 (456)
.... ..............+++ ..+.++++-...+.|..++..+|+.+..+........++.
T Consensus 276 dG~~-~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~ 336 (386)
T 3v65_B 276 DGSH-RKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIH 336 (386)
T ss_dssp TSCS-CEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEE
T ss_pred CCCe-eEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEE
Confidence 5432 22222223345677888 3455566666778899999778877777664433334443
No 267
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.66 E-value=1e-05 Score=66.85 Aligned_cols=171 Identities=14% Similarity=0.078 Sum_probs=116.7
Q ss_pred ccEEEEEECCCCCeEEEEECC--CcEEEEeCCCCcceeEEecCCCC-EEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCC
Q 012799 109 EAVLSVAFSPDGRQLASGSGD--TTVRLWDLNTQTPMFKCTGHKNW-VLCIAWSADGKHLV-SGSKAGELQCWDPQTGKP 184 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~~d--~~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~ 184 (456)
.-...+.|++ +.++.+.+.+ ..|+++|+.+++.+....-.... -..+++. ++.|. ..-.++.+.+||.++.+.
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~ 97 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTP 97 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcE
Confidence 3466899986 5556666654 48999999999998887633221 1234443 44444 445688999999999887
Q ss_pred ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcC-----ccEEEEEeCCCCeEEEEe-
Q 012799 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT-----LAVTCVKWGGDGVIYTGS- 258 (456)
Q Consensus 185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~l~~~~- 258 (456)
+.+...+. .-..+++ ++..|+.+..++.|.++|..+.+.+..+.-.. ..++.+.+. +|.+++..
T Consensus 98 ~~ti~~~~--~Gwglt~-------dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw 167 (243)
T 3mbr_X 98 RARFRYPG--EGWALTS-------DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW 167 (243)
T ss_dssp EEEEECSS--CCCEEEE-------CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred EEEEeCCC--CceEEee-------CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC
Confidence 66433322 2234443 56667777778999999999988887775322 345666766 56566555
Q ss_pred CCCcEEEEECCCCeEEEEeecC-------------CcceEEEEecCc
Q 012799 259 QDCTIKVWETTQGKLIRELKGH-------------GHWVNSLALSTE 292 (456)
Q Consensus 259 ~dg~i~iwd~~~~~~~~~~~~~-------------~~~i~~~~~~~~ 292 (456)
.+..|.+.|.++++.+..+... ....+.|+++|+
T Consensus 168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~ 214 (243)
T 3mbr_X 168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAE 214 (243)
T ss_dssp TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETT
T ss_pred CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCC
Confidence 5789999999999998887522 124578888886
No 268
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.65 E-value=1.7e-05 Score=65.50 Aligned_cols=160 Identities=13% Similarity=0.084 Sum_probs=103.9
Q ss_pred cceEEEEecccccCCCCCEEEEEeCC--CcEEEEECCCCeEEEEecCcCcc-EEEEEeCCCCeEEEEeCCCcEEEEECCC
Q 012799 194 KWITGISWEPVHLNAPCRRFVSASKD--GDARIWDVSLRKCVICLSGHTLA-VTCVKWGGDGVIYTGSQDCTIKVWETTQ 270 (456)
Q Consensus 194 ~~v~~~~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~l~~~~~dg~i~iwd~~~ 270 (456)
.....+.|++ +..+.+.+.+ +.|+.+|+.+++.+..+.-.... -..++...+......-.++.+.+||..+
T Consensus 21 ~ftqGL~~~~------~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~t 94 (243)
T 3mbr_X 21 AFTEGLFYLR------GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLAT 94 (243)
T ss_dssp CCEEEEEEET------TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred cccccEEEEC------CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCc
Confidence 3456777754 3455555654 48999999999998877543322 2344554443444455688999999999
Q ss_pred CeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC
Q 012799 271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK 350 (456)
Q Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 350 (456)
.+.+.++...... ..++ ++ +..|+.+..++.|.++|..+.+
T Consensus 95 l~~~~ti~~~~~G-wglt--~d------------------------------------g~~L~vSdgs~~l~~iDp~t~~ 135 (243)
T 3mbr_X 95 LTPRARFRYPGEG-WALT--SD------------------------------------DSHLYMSDGTAVIRKLDPDTLQ 135 (243)
T ss_dssp TEEEEEEECSSCC-CEEE--EC------------------------------------SSCEEEECSSSEEEEECTTTCC
T ss_pred CcEEEEEeCCCCc-eEEe--eC------------------------------------CCEEEEECCCCeEEEEeCCCCe
Confidence 9999998754322 2333 22 3346666678899999976654
Q ss_pred CCccccc-ccc---ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEe
Q 012799 351 QPKTRMT-GHQ---QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR 399 (456)
Q Consensus 351 ~~~~~~~-~~~---~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 399 (456)
....... .+. ..++.+.+. +|+..+..-.+..|.+.|..+|+.+..+.
T Consensus 136 ~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~id 187 (243)
T 3mbr_X 136 QVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWID 187 (243)
T ss_dssp EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred EEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEE
Confidence 3222111 111 234566665 67655555567899999999999998876
No 269
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.64 E-value=2.3e-05 Score=69.36 Aligned_cols=236 Identities=12% Similarity=0.072 Sum_probs=132.8
Q ss_pred cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEec--------------------CCCCEEEEEEcCCCCEEEEEe
Q 012799 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG--------------------HKNWVLCIAWSADGKHLVSGS 169 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~l~s~~ 169 (456)
...+++|+++|+++.++..++.|..|+..+++.. .+.. ....+..+++.+++..|+.+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 4567889999998888888999999998765432 2210 113578999998333455555
Q ss_pred CCCeEEEEeCCCCCCccc--cccC-cccceEEEEecccccCCCCCEEEEEeC-----------------CCcEEEEECCC
Q 012799 170 KAGELQCWDPQTGKPSGN--PLSG-HKKWITGISWEPVHLNAPCRRFVSASK-----------------DGDARIWDVSL 229 (456)
Q Consensus 170 ~dg~i~vwd~~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~~~~~~l~~~~~-----------------dg~i~iwd~~~ 229 (456)
..+.|..+|..++..... ...+ .......+++.+. +|..+++-.. ++.|..||..+
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~----~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQR----TGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTT----TCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecC----CCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 556688888776542210 0011 1123455665441 4445444322 36788888876
Q ss_pred CeEEEEecCcCccEEEEEeCCCC-eEEEE-eCCCcEEEEECCCCe--EEEEeecCCcceEEEEecCcceeeeccccCCCC
Q 012799 230 RKCVICLSGHTLAVTCVKWGGDG-VIYTG-SQDCTIKVWETTQGK--LIRELKGHGHWVNSLALSTEYALRTGAFDHTGK 305 (456)
Q Consensus 230 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~-~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 305 (456)
++...... .......+++++++ .++++ ...+.|..|++.... ....+..... ...+++.+++
T Consensus 175 ~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G------------ 240 (322)
T 2fp8_A 175 KETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADG------------ 240 (322)
T ss_dssp TEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTS------------
T ss_pred CEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCC------------
Confidence 65433222 12334578999998 56555 456889999987421 1111111112 4556666653
Q ss_pred ccCChHHHHHHHHhhhhhccCCCCCEEEEEeC----------CCcEEEEecCCCCCCccccccc----cccEeEEEECCC
Q 012799 306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSD----------DFTMFLWEPAVSKQPKTRMTGH----QQLVNHVYFSPD 371 (456)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~----~~~v~~~~~sp~ 371 (456)
.+.++... .+.|..+|.. + .....+... -..++.+++ .+
T Consensus 241 ------------------------~l~va~~~~~~~~~~~~~~~~v~~~d~~-G-~~~~~~~~~~g~~~~~~~~~~~-~~ 293 (322)
T 2fp8_A 241 ------------------------HFWVSSSEELDGNMHGRVDPKGIKFDEF-G-NILEVIPLPPPFAGEHFEQIQE-HD 293 (322)
T ss_dssp ------------------------CEEEEEEEETTSSTTSCEEEEEEEECTT-S-CEEEEEECCTTTTTSCCCEEEE-ET
T ss_pred ------------------------CEEEEecCcccccccCCCccEEEEECCC-C-CEEEEEECCCCCccccceEEEE-eC
Confidence 33333322 3567777742 2 222222211 234666666 36
Q ss_pred CCEEEEEECCCcEEEEeCCC
Q 012799 372 GQWVASASFDKSIKLWNGTT 391 (456)
Q Consensus 372 ~~~l~s~~~dg~i~iwd~~~ 391 (456)
+++.++....+.|..+++..
T Consensus 294 g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 294 GLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TEEEEECSSCSEEEEEEC--
T ss_pred CEEEEeecCCCceEEEeccc
Confidence 66666666778888888753
No 270
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.60 E-value=0.00014 Score=63.87 Aligned_cols=232 Identities=9% Similarity=-0.015 Sum_probs=138.7
Q ss_pred CCcEEEEeCCCCcc-eeEEecCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCCccccccCcccceEEEEeccccc
Q 012799 129 DTTVRLWDLNTQTP-MFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206 (456)
Q Consensus 129 d~~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 206 (456)
...|+..+++.... ..........+..++|.+.+..| ++-...+.|..+++..+................+++.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~-- 89 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL-- 89 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT--
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC--
Confidence 45799999886641 22222223457789999855444 455567889999987664221122222234556776651
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCC-CeEEEEeC--CCcEEEEECCCCeEEEEeecCCcc
Q 012799 207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQ--DCTIKVWETTQGKLIRELKGHGHW 283 (456)
Q Consensus 207 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~ 283 (456)
.+..+++-...+.|.++++..................++++|. +.++.+.. .+.|..+++........+...-..
T Consensus 90 --~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~ 167 (318)
T 3sov_A 90 --GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYW 167 (318)
T ss_dssp --TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSC
T ss_pred --CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 3445555556788999998754433333344456789999985 46665553 578888887643322222223344
Q ss_pred eEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccE
Q 012799 284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLV 363 (456)
Q Consensus 284 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 363 (456)
-+.++++++. +..+++-+..+.|..+|+.... ......+.....
T Consensus 168 Pnglavd~~~-----------------------------------~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~P 211 (318)
T 3sov_A 168 PNGLTLDYEE-----------------------------------QKLYWADAKLNFIHKSNLDGTN-RQAVVKGSLPHP 211 (318)
T ss_dssp EEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTSCS-CEEEECSCCSCE
T ss_pred ccEEEEeccC-----------------------------------CEEEEEECCCCEEEEEcCCCCc-eEEEecCCCCCc
Confidence 5788888752 3335555667889999865432 222222233456
Q ss_pred eEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecc
Q 012799 364 NHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH 401 (456)
Q Consensus 364 ~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 401 (456)
..+++.. +.++.+-...+.|..++..+|+....+...
T Consensus 212 ~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~~~ 248 (318)
T 3sov_A 212 FALTLFE-DILYWTDWSTHSILACNKYTGEGLREIHSD 248 (318)
T ss_dssp EEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECC
T ss_pred eEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEeCC
Confidence 6777753 345555556788999998888876666543
No 271
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.56 E-value=0.00035 Score=63.55 Aligned_cols=245 Identities=11% Similarity=-0.004 Sum_probs=147.9
Q ss_pred eEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCC---CccccccCcccceE
Q 012799 122 QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-SKAGELQCWDPQTGK---PSGNPLSGHKKWIT 197 (456)
Q Consensus 122 ~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~---~~~~~~~~~~~~v~ 197 (456)
+|+.+. ...|+..++......... .....+..++|++.+..|+.+ ...+.|..+++.... ..............
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 444443 467999998866544443 356678999999866655554 456789999987532 11112222334566
Q ss_pred EEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCC-CeEEEEeC--CCcEEEEECCCCeEE
Q 012799 198 GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQ--DCTIKVWETTQGKLI 274 (456)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~--dg~i~iwd~~~~~~~ 274 (456)
.+++.+. .+..+++-...+.|.+.++........+.........++++|. +.|+.... .+.|...++......
T Consensus 163 glavD~~----~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~ 238 (400)
T 3p5b_L 163 GLAVDWI----HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 238 (400)
T ss_dssp EEEEETT----TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred cEEEEec----CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence 7777652 3345555556788999998766544444444456789999985 45555543 378988988754433
Q ss_pred EEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcc
Q 012799 275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354 (456)
Q Consensus 275 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 354 (456)
..+...-...+.|++++.. +..+++-...+.|..+|+..... ..
T Consensus 239 ~~~~~~l~~P~glavd~~~-----------------------------------~~lY~aD~~~~~I~~~d~dG~~~-~~ 282 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLS-----------------------------------GRLYWVDSKLHSISSIDVNGGNR-KT 282 (400)
T ss_dssp EEECSSCSCEEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTSCCC-EE
T ss_pred EEEECCCCceEEEEEEeCC-----------------------------------CEEEEEECCCCEEEEEeCCCCcc-EE
Confidence 3333333566788888652 23345555677899998654332 22
Q ss_pred cccc--ccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEE
Q 012799 355 RMTG--HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIR 409 (456)
Q Consensus 355 ~~~~--~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 409 (456)
.... .-.....+++. .+.++++-...+.|..+|..+|+.+..+........++.
T Consensus 283 ~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 283 ILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 338 (400)
T ss_dssp EEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred EEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence 2221 22345567773 344555666678899999888887777765444455553
No 272
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.55 E-value=3.5e-05 Score=64.60 Aligned_cols=200 Identities=12% Similarity=0.079 Sum_probs=123.1
Q ss_pred EecCCCCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEE
Q 012799 146 CTGHKNWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224 (456)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i 224 (456)
+.+-...+..++|+|+++.|+ +...++.|...|.. ++........-......+++.+ ++.++++.-.++.+.+
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-----~g~~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-----DNQFVISDERDYAIYV 95 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-----TTEEEEEETTTTEEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-----CCEEEEEECCCCcEEE
Confidence 445556799999999766555 56778889999997 6655433223235677888876 7766666556778999
Q ss_pred EECCCCeE---EEEec------CcCccEEEEEeCCCC-eEEEEeCCCcEEEEECC---CCeEEEEee-------cCCcce
Q 012799 225 WDVSLRKC---VICLS------GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT---QGKLIRELK-------GHGHWV 284 (456)
Q Consensus 225 wd~~~~~~---~~~~~------~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~---~~~~~~~~~-------~~~~~i 284 (456)
+++..... +.... ........++|+|.+ .|+++.......+|.+. ....+..+. ......
T Consensus 96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 98765432 12221 234457899999988 77776665554555443 111111111 112245
Q ss_pred EEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccc--cc-cc--
Q 012799 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR--MT-GH-- 359 (456)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~-~~-- 359 (456)
.+++++|. .+.+++.+..+..+..+|.. +. ++.. +. +.
T Consensus 176 S~l~~dp~-----------------------------------tg~lliLS~~s~~L~~~d~~-g~-~~~~~~L~~g~~~ 218 (255)
T 3qqz_A 176 SGAEFNQQ-----------------------------------KNTLLVLSHESRALQEVTLV-GE-VIGEMSLTKGSRG 218 (255)
T ss_dssp CEEEEETT-----------------------------------TTEEEEEETTTTEEEEECTT-CC-EEEEEECSTTGGG
T ss_pred eeEEEcCC-----------------------------------CCeEEEEECCCCeEEEEcCC-CC-EEEEEEcCCccCC
Confidence 66666665 25567777778888888844 32 2221 11 11
Q ss_pred ----cccEeEEEECCCCCEEEEEECCCcEEEEeC
Q 012799 360 ----QQLVNHVYFSPDGQWVASASFDKSIKLWNG 389 (456)
Q Consensus 360 ----~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~ 389 (456)
-.....|+|.++|++.++ ++.+.++.+.-
T Consensus 219 l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 219 LSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp CSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred cccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 125688999999985544 67776766653
No 273
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.47 E-value=0.00019 Score=65.00 Aligned_cols=193 Identities=8% Similarity=-0.058 Sum_probs=112.6
Q ss_pred eEEEeecccccccccCCcccEEEEEECCCCCeEE-EEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCE-EEEE
Q 012799 91 VFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLA-SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH-LVSG 168 (456)
Q Consensus 91 ~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~l~-~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~ 168 (456)
+.++.+.+.....+......+..++|++.+..|+ +-...+.|+.++.+.......+.........+++.+.+.. .++-
T Consensus 98 I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d 177 (386)
T 3v65_B 98 IRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTD 177 (386)
T ss_dssp EEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEE
T ss_pred ceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEc
Confidence 3444443333333333445678999997655554 4446778999998866544434333345677899875544 4555
Q ss_pred eCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEe-CC-CcEEEEECCCCeEEEEecCcCccEEEE
Q 012799 169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KD-GDARIWDVSLRKCVICLSGHTLAVTCV 246 (456)
Q Consensus 169 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~-~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~ 246 (456)
...+.|.+.+++...... ...........+++.| .+..++... .. +.|..+++............-.....+
T Consensus 178 ~~~~~I~~~~~dg~~~~~-l~~~~l~~P~giavdp-----~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGl 251 (386)
T 3v65_B 178 SGTSRIEVANLDGAHRKV-LLWQSLEKPRAIALHP-----MEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGL 251 (386)
T ss_dssp TTTTEEEECBTTSCSCEE-EECSSCSCEEEEEEET-----TTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred CCCCeEEEEeCCCCceEE-eecCCCCCCcEEEEEc-----CCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeE
Confidence 557789999887543221 2333334567888887 445555444 34 678888876543333333334457889
Q ss_pred EeCCCC-eEEEE-eCCCcEEEEECCCCeEEEEeecCCcceEEEEe
Q 012799 247 KWGGDG-VIYTG-SQDCTIKVWETTQGKLIRELKGHGHWVNSLAL 289 (456)
Q Consensus 247 ~~~~~~-~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 289 (456)
++++++ .|+.+ +..+.|..+|+........+.........+++
T Consensus 252 avd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav 296 (386)
T 3v65_B 252 TIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV 296 (386)
T ss_dssp EEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE
T ss_pred EEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE
Confidence 999754 55544 45678999998654333223222233345555
No 274
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.47 E-value=0.00035 Score=62.31 Aligned_cols=176 Identities=8% Similarity=-0.089 Sum_probs=106.1
Q ss_pred cccEEEEEECCCCCeEEEE-ECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCCCc
Q 012799 108 TEAVLSVAFSPDGRQLASG-SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDPQTGKPS 185 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~-~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 185 (456)
...+..++|++....|... ...+.|..++.+.......+.........+++.+.+. +.++-...+.|.+.+++.....
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 151 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 151 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE
Confidence 3457899999765555544 4678899999886654444433344567899987554 4455556788999998754322
Q ss_pred cccccCcccceEEEEecccccCCCCCEEEEEe-CC-CcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE-eCCC
Q 012799 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KD-GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG-SQDC 261 (456)
Q Consensus 186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~-~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~-~~dg 261 (456)
. ...........+++.| .+..++... .. +.|..+++............-.....+++++++ .|+.+ ...+
T Consensus 152 ~-l~~~~l~~P~~iavdp-----~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~ 225 (349)
T 3v64_C 152 V-LLWQSLEKPRAIALHP-----MEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH 225 (349)
T ss_dssp E-EECTTCSCEEEEEEET-----TTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred E-EEeCCCCCcceEEEec-----CcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCC
Confidence 1 2223334567888887 444444443 44 778888876443322222234457899999755 55554 4567
Q ss_pred cEEEEECCCCeEEEEeecCCcceEEEEe
Q 012799 262 TIKVWETTQGKLIRELKGHGHWVNSLAL 289 (456)
Q Consensus 262 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 289 (456)
.|..+|+........+.........+++
T Consensus 226 ~I~~~~~dG~~~~~~~~~~~~~P~giav 253 (349)
T 3v64_C 226 VIERANLDGSHRKAVISQGLPHPFAITV 253 (349)
T ss_dssp EEEEEETTSCSCEEEECSSCSSEEEEEE
T ss_pred EEEEEeCCCCceEEEEeCCCCCceEEEE
Confidence 8999998754332223222233344554
No 275
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.46 E-value=0.00063 Score=60.05 Aligned_cols=265 Identities=8% Similarity=-0.058 Sum_probs=139.4
Q ss_pred cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe----cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 012799 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT----GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 183 (456)
...+.++.|.+++..+++ +.+|.| +...+.++.-.... .....+.++.|.+ +. ++.++.++.|.. ..+.|+
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCCC
Confidence 457999999888877775 466755 33334443222221 1244688999976 44 444556665443 223333
Q ss_pred Ccccccc--CcccceEEEEecccccCCCCCEEEEEeCCCcEEE-EECCCCeEE-EEecCcCccEEEEEeCCCCeEEEEeC
Q 012799 184 PSGNPLS--GHKKWITGISWEPVHLNAPCRRFVSASKDGDARI-WDVSLRKCV-ICLSGHTLAVTCVKWGGDGVIYTGSQ 259 (456)
Q Consensus 184 ~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~-~~~~~~~~~v~~~~~~~~~~l~~~~~ 259 (456)
.-..... .+...+..+.+.+ ++..+++ +.+|.|.. .| .++.- .........+..+.+.+++.+++.+.
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~-----~~~~~~~-~~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~ 181 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALG-----NGSAEMI-TNVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS 181 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEE-----TTEEEEE-ETTCCEEEESS--TTSSEEEEECSCCCCEEEEEECTTSCEEEEET
T ss_pred CceECccccCCCCCeEEEEEEC-----CCCEEEE-eCCccEEEEcC--CCCCCEEeecCCCcceEEEEEcCCCcEEEEEC
Confidence 2211111 1234466676654 4545544 45565432 22 22211 12234456788999999886666666
Q ss_pred CCcEEEE-EC--CCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEe
Q 012799 260 DCTIKVW-ET--TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (456)
Q Consensus 260 dg~i~iw-d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 336 (456)
+|.+..- |- .+-+.+. ......+..+.+.++. . ++.++
T Consensus 182 ~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g------------------------------------~-~~~~~ 222 (327)
T 2xbg_A 182 RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDG------------------------------------R-LWMIV 222 (327)
T ss_dssp TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTS------------------------------------C-EEEEE
T ss_pred CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCC------------------------------------C-EEEEe
Confidence 6665543 32 2223321 2234456677766552 2 45556
Q ss_pred CCCcEEEEecCCCCC--Ccccc-ccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec---ccccEEEEEe
Q 012799 337 DDFTMFLWEPAVSKQ--PKTRM-TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG---HVGPVYQIRF 410 (456)
Q Consensus 337 ~dg~i~iwd~~~~~~--~~~~~-~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~i~~ 410 (456)
.+|.+++.+...+.. ....- ..+...+..+++.+++.+++++ .+|.+ ++....|+.-..+.. ....+.++
T Consensus 223 ~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v-- 298 (327)
T 2xbg_A 223 NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKI-- 298 (327)
T ss_dssp TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEE--
T ss_pred CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEE--
Confidence 677777663111111 11100 0122358889999888776665 46766 444455554443331 22345566
Q ss_pred eeeeeecCCCCceeeecccccccceeEecCCCeEEEeeCCCceE
Q 012799 411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLK 454 (456)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~s~Dg~v~ 454 (456)
.|.+++ .++.++.+|.|.
T Consensus 299 -------------------------~~~~~~-~~~~~G~~G~i~ 316 (327)
T 2xbg_A 299 -------------------------LFFSPD-QGFILGQKGILL 316 (327)
T ss_dssp -------------------------EEEETT-EEEEECSTTEEE
T ss_pred -------------------------EEECCC-ceEEEcCCceEE
Confidence 666554 466667788765
No 276
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.43 E-value=0.00038 Score=58.32 Aligned_cols=183 Identities=11% Similarity=0.099 Sum_probs=120.1
Q ss_pred cccCCcccEEEEEECCCCCeE-EEEECCCcEEEEeCCCCcceeEEe-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799 103 TIAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (456)
Q Consensus 103 ~l~~h~~~V~~~~~s~~~~~l-~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 180 (456)
.+.|-.+.+..++|+|++..| ++...++.|...|.. ++.+..+. +-....-.|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 455666789999999976644 556778899999987 77777764 223567889999888877776677889998876
Q ss_pred CCCCc---ccc-----ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC---CeEEEEe-------cCcCcc
Q 012799 181 TGKPS---GNP-----LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL---RKCVICL-------SGHTLA 242 (456)
Q Consensus 181 ~~~~~---~~~-----~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~-------~~~~~~ 242 (456)
..... ... ..........++|.| .++.|+++.......+|.+.. ...+..+ ..+...
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-----~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d 174 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSR-----QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD 174 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEET-----TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeC-----CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence 54421 100 112345578999998 677777777665555555531 1111111 112345
Q ss_pred EEEEEeCCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCC---------cceEEEEecCc
Q 012799 243 VTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHG---------HWVNSLALSTE 292 (456)
Q Consensus 243 v~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~~~~ 292 (456)
+..++++|.. .++....++.+..+|.. ++.+..+.-.. ..-..|++.++
T Consensus 175 ~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~ 234 (255)
T 3qqz_A 175 VSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDAS 234 (255)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTT
T ss_pred ceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCC
Confidence 7889999966 55666667789999966 55655554332 24577888876
No 277
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.33 E-value=0.00022 Score=65.52 Aligned_cols=153 Identities=11% Similarity=0.130 Sum_probs=92.9
Q ss_pred cEEEEEECC-CCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC-C----eEEEEeCCCCC
Q 012799 110 AVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA-G----ELQCWDPQTGK 183 (456)
Q Consensus 110 ~V~~~~~s~-~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g----~i~vwd~~~~~ 183 (456)
....++++| ++..|..+...+.|+.+|..++... .+.........++|++++++|+.+... + .+...+. .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 457899998 4555666555478999998765543 333455678999999999966666542 1 2333443 332
Q ss_pred Ccc-ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CcCccEEEEEeCCCC-eEEEEe-C
Q 012799 184 PSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGGDG-VIYTGS-Q 259 (456)
Q Consensus 184 ~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~-~ 259 (456)
... ..+. .......++++|. ++..+++-..++.|..++...+....... ........++++|++ .|+.+. .
T Consensus 216 ~~~~~~l~-~~~~p~giavdp~----~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~ 290 (430)
T 3tc9_A 216 FKVITELT-KGQNCNGAETHPI----NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN 290 (430)
T ss_dssp SCSEEEEE-ECSSCCCEEECTT----TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred eeeeeeec-cCCCceEEEEeCC----CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence 221 0111 1223345566651 34555555567889999998776422221 122446789999999 455554 5
Q ss_pred CCcEEEEECC
Q 012799 260 DCTIKVWETT 269 (456)
Q Consensus 260 dg~i~iwd~~ 269 (456)
.+.|..++..
T Consensus 291 ~~~I~~~~~d 300 (430)
T 3tc9_A 291 QHYILRSDYD 300 (430)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEeCC
Confidence 6788887765
No 278
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.32 E-value=0.0018 Score=58.84 Aligned_cols=163 Identities=7% Similarity=-0.064 Sum_probs=103.1
Q ss_pred ccCCcccEEEEEECCCCCeEEEE-ECCCcEEEEeCCCC----cceeEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEE
Q 012799 104 IAGHTEAVLSVAFSPDGRQLASG-SGDTTVRLWDLNTQ----TPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCW 177 (456)
Q Consensus 104 l~~h~~~V~~~~~s~~~~~l~~~-~~d~~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vw 177 (456)
+......+..++|++.+..|..+ ...+.|+.+++... .....+.........+++.+ .+++.++-...+.|.+.
T Consensus 107 ~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~ 186 (400)
T 3p5b_L 107 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 186 (400)
T ss_dssp EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEE
Confidence 33455678899999866555554 45678999988752 23333333456788999988 45555555667889999
Q ss_pred eCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC--CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eE
Q 012799 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI 254 (456)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l 254 (456)
+++...... ...........+++.| .+..|+.... .+.|...++............-.....+++++++ .|
T Consensus 187 ~~~g~~~~~-l~~~~~~~P~~iavdp-----~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~l 260 (400)
T 3p5b_L 187 DTKGVKRKT-LFRENGSKPRAIVVDP-----VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRL 260 (400)
T ss_dssp CTTTCSEEE-EEECSSCCEEEEEEET-----TTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEE
T ss_pred eCCCCceEE-EEeCCCCCcceEEEec-----ccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEE
Confidence 987554322 2322334567888887 4455555543 3678888886544333333334567899999765 66
Q ss_pred EEEe-CCCcEEEEECCCCe
Q 012799 255 YTGS-QDCTIKVWETTQGK 272 (456)
Q Consensus 255 ~~~~-~dg~i~iwd~~~~~ 272 (456)
+.+. ..+.|..+|+....
T Consensus 261 Y~aD~~~~~I~~~d~dG~~ 279 (400)
T 3p5b_L 261 YWVDSKLHSISSIDVNGGN 279 (400)
T ss_dssp EEEETTTTEEEEEETTSCC
T ss_pred EEEECCCCEEEEEeCCCCc
Confidence 5554 46789999986543
No 279
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.26 E-value=0.0013 Score=58.04 Aligned_cols=229 Identities=10% Similarity=0.003 Sum_probs=125.2
Q ss_pred cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe---cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 012799 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT---GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP 184 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 184 (456)
...+.++.|++ +..++. +.++.|.. ..+.++.-.... .+...+..+.+.+++..++.+ .+|.|.. ..+.|+.
T Consensus 79 ~~~~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEEE-EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred CccEEEEEecC-CeEEEE-ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCC
Confidence 45789999986 454444 45664443 333343322222 233557888887777666555 4554322 1223433
Q ss_pred ccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEEC--CCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCc
Q 012799 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV--SLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCT 262 (456)
Q Consensus 185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~ 262 (456)
-..........+..+.+.+ ++..++.+...+..+-+|- .+.+.+. ......+..+.+.+++.++.++.+|.
T Consensus 154 W~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~ 226 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSP-----SGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGK 226 (327)
T ss_dssp EEEEECSCCCCEEEEEECT-----TSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTE
T ss_pred CEEeecCCCcceEEEEEcC-----CCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCce
Confidence 2222334455678888877 6666665544333344442 3334332 23456788999999887777788888
Q ss_pred EEEEECCCCeEEEEeecC----CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCC
Q 012799 263 IKVWETTQGKLIRELKGH----GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (456)
Q Consensus 263 i~iwd~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 338 (456)
+++.+...++.-..+... ...+..+.+.++ +. ++.++.+
T Consensus 227 ~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~------------------------------------~~-~~~~g~~ 269 (327)
T 2xbg_A 227 IAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTP------------------------------------NE-VWLAGGA 269 (327)
T ss_dssp EEEEETTEEEEECCCBCTTSSCCSCEEEEEESSS------------------------------------SC-EEEEEST
T ss_pred EEEecCCCCCeeEeccCCcccCCcceEEEEecCC------------------------------------CE-EEEEeCC
Confidence 877653334433333211 224666766654 22 4444556
Q ss_pred CcEEEEecCCCCCCccccc---cccccEeEEEECCCCCEEEEEECCCcEEEEe
Q 012799 339 FTMFLWEPAVSKQPKTRMT---GHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388 (456)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd 388 (456)
+.+.. ....+. ...... .....+.++.|.++++ +++++.+|.|.-++
T Consensus 270 g~i~~-S~DgG~-tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 270 GALLC-SQDGGQ-TWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp TCEEE-ESSTTS-SCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred CeEEE-eCCCCc-ccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 76633 323232 222222 2235578888875554 55666789777665
No 280
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.25 E-value=0.00023 Score=70.63 Aligned_cols=112 Identities=13% Similarity=0.144 Sum_probs=73.6
Q ss_pred CEEEEEEc-CCCCEEEEEeC-CC----eEEEEeCCCC-CCccccccCcccceEEEEecccccCCCCCEEEEEeCC-----
Q 012799 152 WVLCIAWS-ADGKHLVSGSK-AG----ELQCWDPQTG-KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD----- 219 (456)
Q Consensus 152 ~v~~~~~~-~~~~~l~s~~~-dg----~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d----- 219 (456)
.+...+|| |||++||.+.. +| .|+++|+.++ +.+...+ ......+.|+| +++.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~---~~~~~~~~Wsp-----Dg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV---SGTNGEIVWGP-----DHTSLFYVTKDETLRE 246 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE---EEECSCCEECS-----STTEEEEEEECTTCCE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc---cCceeeEEEec-----CCCEEEEEEECCCCCC
Confidence 67889999 99998886543 22 5999999998 6332111 11234678888 88888877765
Q ss_pred CcEEEEECCCCeE--EEEec-CcCccEEEEEeCCCC-eEEEEeC---CCcEEEEECCCC
Q 012799 220 GDARIWDVSLRKC--VICLS-GHTLAVTCVKWGGDG-VIYTGSQ---DCTIKVWETTQG 271 (456)
Q Consensus 220 g~i~iwd~~~~~~--~~~~~-~~~~~v~~~~~~~~~-~l~~~~~---dg~i~iwd~~~~ 271 (456)
..|+.+++.++.. ...+. ........+.|+|+| .|+..+. ...|.++|+.++
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 2588888876531 22222 223446788999999 5554432 346888888765
No 281
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.23 E-value=0.00035 Score=64.28 Aligned_cols=199 Identities=8% Similarity=0.035 Sum_probs=114.4
Q ss_pred CCEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCC---C-cEEE
Q 012799 151 NWVLCIAWSAD--GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD---G-DARI 224 (456)
Q Consensus 151 ~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d---g-~i~i 224 (456)
.....++|+|+ +..|+.+...+.|+.++..++.... +.........+++++ +++++++-... . .+..
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~--~~~~~~~P~giavd~-----dG~lyVad~~~~~~~~gv~~ 211 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI--KTTNIGQCADVNFTL-----NGDMVVVDDQSSDTNTGIYL 211 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE--ECCCCSCEEEEEECT-----TCCEEEEECCSCTTSEEEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE--eecCCCCccEEEECC-----CCCEEEEcCCCCcccceEEE
Confidence 34678999984 4556665554889999998776543 223345578899988 88844443321 1 1333
Q ss_pred EECCCCeE-EEEecCcCccEEEEEeCC-CCeEEEEe-CCCcEEEEECCCCeEEEEe-ec-CCcceEEEEecCcceeeecc
Q 012799 225 WDVSLRKC-VICLSGHTLAVTCVKWGG-DGVIYTGS-QDCTIKVWETTQGKLIREL-KG-HGHWVNSLALSTEYALRTGA 299 (456)
Q Consensus 225 wd~~~~~~-~~~~~~~~~~v~~~~~~~-~~~l~~~~-~dg~i~iwd~~~~~~~~~~-~~-~~~~i~~~~~~~~~~~~~~~ 299 (456)
.+...+.. ...+. .......+++++ ++.|+.+. .++.|+.+|..++.....+ .. ....-..++++|+
T Consensus 212 ~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpd------- 283 (433)
T 4hw6_A 212 FTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPT------- 283 (433)
T ss_dssp ECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTT-------
T ss_pred EECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCC-------
Confidence 33221110 01111 123345678888 66665554 5678999999877653332 21 1122345788877
Q ss_pred ccCCCCccCChHHHHHHHHhhhhhccCCCCC-EEEEEeCCCcEEEEecCCCCCCc---ccccc---------------cc
Q 012799 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPE-RLVSGSDDFTMFLWEPAVSKQPK---TRMTG---------------HQ 360 (456)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~---~~~~~---------------~~ 360 (456)
++ .+++-...+.|+.++........ ..+.+ .-
T Consensus 284 -----------------------------G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~ 334 (433)
T 4hw6_A 284 -----------------------------GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARL 334 (433)
T ss_dssp -----------------------------SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBC
T ss_pred -----------------------------CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEE
Confidence 44 35555567788887754321110 01111 11
Q ss_pred ccEeEEEE---------CCCCCEEEEEECCCcEEEEeCCCCeE
Q 012799 361 QLVNHVYF---------SPDGQWVASASFDKSIKLWNGTTGKF 394 (456)
Q Consensus 361 ~~v~~~~~---------sp~~~~l~s~~~dg~i~iwd~~~~~~ 394 (456)
.....+++ .++|.+.++-...++|+.++. +|..
T Consensus 335 ~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v 376 (433)
T 4hw6_A 335 WGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV 376 (433)
T ss_dssp SSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE
T ss_pred cCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCE
Confidence 23677899 777877777667788999984 5643
No 282
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.21 E-value=0.00037 Score=64.05 Aligned_cols=134 Identities=9% Similarity=0.078 Sum_probs=80.7
Q ss_pred CEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC-CC----cEEEE
Q 012799 152 WVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DG----DARIW 225 (456)
Q Consensus 152 ~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg----~i~iw 225 (456)
....|+++| ++..|+.+...+.|+.+|+..+.... +.........++|++ +++.++++.. ++ .+..+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~--~~~~~~~P~~ia~d~-----~G~~lyvad~~~~~~~~~v~~~ 210 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST--VYSGLSKVRTICWTH-----EADSMIITNDQNNNDRPNNYIL 210 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE--EECCCSCEEEEEECT-----TSSEEEEEECCSCTTSEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE--EecCCCCcceEEEeC-----CCCEEEEEeCCCCcccceEEEE
Confidence 567899998 45667666665889999998765432 222345578899988 8886666554 22 23334
Q ss_pred ECCCCeE-EEEecCcCccEEEEEeCC-CCeEEEE-eCCCcEEEEECCCCeEEEEeec-CCcceEEEEecCcc
Q 012799 226 DVSLRKC-VICLSGHTLAVTCVKWGG-DGVIYTG-SQDCTIKVWETTQGKLIRELKG-HGHWVNSLALSTEY 293 (456)
Q Consensus 226 d~~~~~~-~~~~~~~~~~v~~~~~~~-~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~ 293 (456)
+...... ...+. .......++++| ++.|+.+ ..++.|..++...+........ .......++++|++
T Consensus 211 ~~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG 281 (430)
T 3tc9_A 211 TRESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSG 281 (430)
T ss_dssp EGGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTS
T ss_pred eCCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCC
Confidence 4322111 11121 123346678999 6655544 4678899999987664332222 22346678888873
No 283
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.21 E-value=0.0023 Score=63.27 Aligned_cols=230 Identities=11% Similarity=-0.006 Sum_probs=136.4
Q ss_pred CCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCC---ccccccCcccceEEEEecc
Q 012799 128 GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQTGKP---SGNPLSGHKKWITGISWEP 203 (456)
Q Consensus 128 ~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~ 203 (456)
....|+..++......... .....+..|+|.+.+..| ++-...+.|+.+++..... ....+.........+++.+
T Consensus 402 n~~~Ir~i~l~~~~~~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~ 480 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 480 (791)
T ss_dssp CBSSEEEECTTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred cccceeEeeccCCcceeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence 4456888888765544333 355678899999855544 4555567899998875321 1112222334456777766
Q ss_pred cccCCCC-CEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCC-CeEEEEeC-C-CcEEEEECCCCeEEEEeec
Q 012799 204 VHLNAPC-RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQ-D-CTIKVWETTQGKLIRELKG 279 (456)
Q Consensus 204 ~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~-d-g~i~iwd~~~~~~~~~~~~ 279 (456)
.+ +++++-...+.|.+.++........+.........|+++|. +.|+.+.. . +.|...++........+..
T Consensus 481 -----~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~ 555 (791)
T 3m0c_C 481 -----IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE 555 (791)
T ss_dssp -----TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred -----cCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeC
Confidence 34 45555566789999998765544444444456889999986 46665553 2 6798898875544444443
Q ss_pred CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccccc-
Q 012799 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG- 358 (456)
Q Consensus 280 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~- 358 (456)
.......|++.+.. +.++++-.....|..+++.... .......
T Consensus 556 ~l~~P~GLavD~~~-----------------------------------~~LYwaD~~~~~I~~~d~dG~~-~~~v~~~~ 599 (791)
T 3m0c_C 556 NIQWPNGITLDLLS-----------------------------------GRLYWVDSKLHSISSIDVNGGN-RKTILEDE 599 (791)
T ss_dssp SCSCEEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTSCS-CEEEEECT
T ss_pred CCCCceEEEEecCC-----------------------------------CeEEEEeCCCCcEEEEecCCCc-eEEEecCC
Confidence 44567788887652 2334444556778888865433 2222221
Q ss_pred -ccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799 359 -HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG 400 (456)
Q Consensus 359 -~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 400 (456)
.-.....|++.. ++++++-...+.|...+..+|+.+..+..
T Consensus 600 ~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l~~ 641 (791)
T 3m0c_C 600 KRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLAE 641 (791)
T ss_dssp TTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred CccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEeec
Confidence 122345666632 33444444567888888888877666653
No 284
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.12 E-value=0.0013 Score=60.36 Aligned_cols=154 Identities=11% Similarity=0.065 Sum_probs=86.5
Q ss_pred cEEEEEECCC--CCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC---Ce-EEEEeCCCCC
Q 012799 110 AVLSVAFSPD--GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GE-LQCWDPQTGK 183 (456)
Q Consensus 110 ~V~~~~~s~~--~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~-i~vwd~~~~~ 183 (456)
....++|+|+ ...|..+...+.|+.++..++.... +.........++++++|+++++.... .. +...+...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 4578999985 3344444433889999987665443 44455668999999999944443311 12 3333322111
Q ss_pred CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEe-c-CcCccEEEEEeCCCC-eEEEEe-C
Q 012799 184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-S-GHTLAVTCVKWGGDG-VIYTGS-Q 259 (456)
Q Consensus 184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~-~~~~~v~~~~~~~~~-~l~~~~-~ 259 (456)
.....+ ........+++.|. ++..+++-..++.|+.+|..++.....+ . +....-..++++|++ .|+.+. .
T Consensus 219 ~~~~~~-~~~~~P~giavd~~----~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~ 293 (433)
T 4hw6_A 219 TERLSL-CNARGAKTCAVHPQ----NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG 293 (433)
T ss_dssp CCEEEE-EECSSBCCCEECTT----TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT
T ss_pred eccccc-cccCCCCEEEEeCC----CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC
Confidence 100000 01122234455441 3444445556778999998866552222 1 112223469999998 465555 4
Q ss_pred CCcEEEEECC
Q 012799 260 DCTIKVWETT 269 (456)
Q Consensus 260 dg~i~iwd~~ 269 (456)
.+.|+.++..
T Consensus 294 ~~~I~~~~~d 303 (433)
T 4hw6_A 294 KHCIYRVDYN 303 (433)
T ss_dssp TTEEEEEEBC
T ss_pred CCEEEEEeCC
Confidence 6789888765
No 285
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.11 E-value=0.00022 Score=69.78 Aligned_cols=114 Identities=19% Similarity=0.240 Sum_probs=69.8
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------eEEEEeCCCCCCcccc--ccCcccceEEEEecccccCCCCCEEEEEeC-C
Q 012799 155 CIAWSA-DGKHLVSGSKAG-----------ELQCWDPQTGKPSGNP--LSGHKKWITGISWEPVHLNAPCRRFVSASK-D 219 (456)
Q Consensus 155 ~~~~~~-~~~~l~s~~~dg-----------~i~vwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-d 219 (456)
..++.+ +++.++.|+.+. .+.+||..+++..... ...+.....++++.. ++..+++|+. +
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-----~g~lyv~GG~~~ 264 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-----NGQIVVTGGNDA 264 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-----TSCEEEECSSST
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-----CCCEEEeCCCCC
Confidence 566777 888888887643 5889999887643211 111222233445545 7889999884 5
Q ss_pred CcEEEEECCCCeEEEEecCcCc-cEEEEEeCCCC-eEEEEe-CC-----CcEEEEECCCCeE
Q 012799 220 GDARIWDVSLRKCVICLSGHTL-AVTCVKWGGDG-VIYTGS-QD-----CTIKVWETTQGKL 273 (456)
Q Consensus 220 g~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~-~l~~~~-~d-----g~i~iwd~~~~~~ 273 (456)
+.+.+||..+.+-...-..+.. .-.+++..+++ .++.|+ .+ ..+.+||..+++-
T Consensus 265 ~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 265 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 5899999987754332211111 11234455566 666666 34 4689999987653
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.06 E-value=0.0056 Score=60.53 Aligned_cols=165 Identities=8% Similarity=-0.062 Sum_probs=102.9
Q ss_pred ccCCcccEEEEEECCCCCeE-EEEECCCcEEEEeCCCC----cceeEEecCCCCEEEEEEcCCCCEEE-EEeCCCeEEEE
Q 012799 104 IAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQ----TPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGELQCW 177 (456)
Q Consensus 104 l~~h~~~V~~~~~s~~~~~l-~~~~~d~~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vw 177 (456)
+......+.+++|++....| ++-...+.|+.+++... .....+.........|++.+.++.|+ +-...+.|.+.
T Consensus 419 l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~ 498 (791)
T 3m0c_C 419 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 498 (791)
T ss_dssp EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEE
Confidence 33445667899999855544 44445678999988753 22333333455677899988665444 55567889999
Q ss_pred eCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC--CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eE
Q 012799 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI 254 (456)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l 254 (456)
++..... .............|++.| ....|+.... .+.|...++........+...-.....|++++.+ .|
T Consensus 499 ~ldG~~~-~~l~~~~l~~P~gIaVDp-----~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~L 572 (791)
T 3m0c_C 499 DTKGVKR-KTLFRENGSKPRAIVVDP-----VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRL 572 (791)
T ss_dssp ETTSSSE-EEEEECTTCCEEEEEEET-----TTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEE
T ss_pred eCCCCeE-EEEEeCCCCCcceEEEec-----CCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeE
Confidence 9875432 222333344578888887 5445555543 2678888887554444444444678899999655 66
Q ss_pred EEEe-CCCcEEEEECCCCeEE
Q 012799 255 YTGS-QDCTIKVWETTQGKLI 274 (456)
Q Consensus 255 ~~~~-~dg~i~iwd~~~~~~~ 274 (456)
+.+. ..+.|..+++......
T Consensus 573 YwaD~~~~~I~~~d~dG~~~~ 593 (791)
T 3m0c_C 573 YWVDSKLHSISSIDVNGGNRK 593 (791)
T ss_dssp EEEETTTTEEEEEETTSCSCE
T ss_pred EEEeCCCCcEEEEecCCCceE
Confidence 5554 4567999998654433
No 287
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.06 E-value=3.6e-05 Score=75.42 Aligned_cols=230 Identities=11% Similarity=0.002 Sum_probs=130.1
Q ss_pred CCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCC---CCccccccCcccceEEEEeccc
Q 012799 129 DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTG---KPSGNPLSGHKKWITGISWEPV 204 (456)
Q Consensus 129 d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~ 204 (456)
.+.|+..++.+.+....+. ....+..++|.+.+..|+.+. ..+.|..+++... ................+++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 4578888887655443333 334567899998766666554 4578999998751 1111122211223445666541
Q ss_pred ccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEeC-C-CcEEEEECCCCeEEEEeecCC
Q 012799 205 HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ-D-CTIKVWETTQGKLIRELKGHG 281 (456)
Q Consensus 205 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-d-g~i~iwd~~~~~~~~~~~~~~ 281 (456)
.+.++++-...+.|.++++........+.........++++|.+ .|+.+.. . +.|..+++........+....
T Consensus 464 ----~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l 539 (699)
T 1n7d_A 464 ----HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI 539 (699)
T ss_dssp ----SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSC
T ss_pred ----CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCC
Confidence 34455555567889999987655444443333456778898854 5554443 2 678777765332211122222
Q ss_pred cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccc--cc
Q 012799 282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT--GH 359 (456)
Q Consensus 282 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~ 359 (456)
...+.|+++++. +.++++-...+.|..+++..... ..... ..
T Consensus 540 ~~PnGlavd~~~-----------------------------------~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~ 583 (699)
T 1n7d_A 540 QWPNGITLDLLS-----------------------------------GRLYWVDSKLHSISSIDVNGGNR-KTILEDEKR 583 (699)
T ss_dssp SSCCCEEECTTT-----------------------------------CCEEEEETTTTEEEEECSSSSCC-EEECCCSSS
T ss_pred CCccEEEEeccC-----------------------------------CEEEEEecCCCeEEEEccCCCce-EEEEecCCc
Confidence 344567777652 33455666677899998754322 21111 11
Q ss_pred cccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG 400 (456)
Q Consensus 360 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 400 (456)
......|++..+ .++++....+.|..++..+|+.+..+..
T Consensus 584 ~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 584 LAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp CSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred CCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 123345566443 4555556678999999888888777654
No 288
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.05 E-value=0.0049 Score=59.42 Aligned_cols=165 Identities=10% Similarity=0.007 Sum_probs=99.0
Q ss_pred ccEEEEEECCCCC-eEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCCCc
Q 012799 109 EAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK--AGELQCWDPQTGKPS 185 (456)
Q Consensus 109 ~~V~~~~~s~~~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~ 185 (456)
.....+++.+.+. ++++-...+.|.+.+++...........-.....|++.|.+.+|+.... .+.|...+++.....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~ 163 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF 163 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence 5688999998555 4445456789999998754433333345556789999997666655543 456777776543322
Q ss_pred cccccCcccceEEEEecccccCCCCCEEEEE-eCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEE
Q 012799 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSA-SKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIK 264 (456)
Q Consensus 186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~ 264 (456)
......-.....+++.+ ++..|+.+ ...+.|...|+..........+.......+++..+..+++-...+.|.
T Consensus 164 -~l~~~~~~~P~Glald~-----~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~ 237 (619)
T 3s94_A 164 -IIINSEIYWPNGLTLDY-----EEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSIL 237 (619)
T ss_dssp -EEECSSCSSEEEEEEET-----TTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEEEEECTTTCSEE
T ss_pred -EEEeCCCCCCcEEEEEc-----cCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEE
Confidence 12222334567888887 54555554 446778888886544332222122223456776663444445677899
Q ss_pred EEECCCCeEEEEeec
Q 012799 265 VWETTQGKLIRELKG 279 (456)
Q Consensus 265 iwd~~~~~~~~~~~~ 279 (456)
..|..+++....+..
T Consensus 238 ~~d~~tg~~~~~i~~ 252 (619)
T 3s94_A 238 ACNKYTGEGLREIHS 252 (619)
T ss_dssp EEESSSCCCCEECCS
T ss_pred EEECCCCcccEEEec
Confidence 999888776555543
No 289
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.05 E-value=0.0053 Score=53.77 Aligned_cols=156 Identities=8% Similarity=-0.063 Sum_probs=97.1
Q ss_pred cEEEEEECCCCC-eEEEEECCCcEEEEeCCCCcce-eEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCCcc
Q 012799 110 AVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPM-FKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKPSG 186 (456)
Q Consensus 110 ~V~~~~~s~~~~-~l~~~~~d~~v~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~ 186 (456)
.+.+++|++.+. ++.+-...+.|..++....... ..+...-.....+++.+. +++.++-...+.|.+++++......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 466899998544 4445456788999998765422 222323345678899874 4455555567889999987543221
Q ss_pred ccccCcccceEEEEecccccCCCCCEEEEEe--CCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEE-eCCCc
Q 012799 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSAS--KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG-SQDCT 262 (456)
Q Consensus 187 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~-~~dg~ 262 (456)
...........+++.| .+..++.+. ..+.|...++............-.....+++++++ .|+.+ +..+.
T Consensus 116 -l~~~~~~~P~giavdp-----~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~ 189 (318)
T 3sov_A 116 -LFWQELDQPRAIALDP-----SSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNF 189 (318)
T ss_dssp -EECSSCSSEEEEEEEG-----GGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred -EEeCCCCCccEEEEeC-----CCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCE
Confidence 2223344567888887 444555554 25778888876433222222333456899999855 55554 45678
Q ss_pred EEEEECCCC
Q 012799 263 IKVWETTQG 271 (456)
Q Consensus 263 i~iwd~~~~ 271 (456)
|..+|+...
T Consensus 190 I~~~d~dG~ 198 (318)
T 3sov_A 190 IHKSNLDGT 198 (318)
T ss_dssp EEEEETTSC
T ss_pred EEEEcCCCC
Confidence 999998643
No 290
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.03 E-value=0.0067 Score=56.06 Aligned_cols=153 Identities=12% Similarity=0.119 Sum_probs=91.0
Q ss_pred cEEEEEECCC-C-CeEEEEECCCcEEEEeCCCCcceeEEec---CCCCEEEEEE-------cCCCCEEEEEeCCC-----
Q 012799 110 AVLSVAFSPD-G-RQLASGSGDTTVRLWDLNTQTPMFKCTG---HKNWVLCIAW-------SADGKHLVSGSKAG----- 172 (456)
Q Consensus 110 ~V~~~~~s~~-~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~---~~~~v~~~~~-------~~~~~~l~s~~~dg----- 172 (456)
....|+|+|. . +++++-...+.|++.|..++........ .......++| +++++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4678999983 4 4444444456789999887665544332 1235899999 99999777666554
Q ss_pred --eEEEEeCCC-CCCcc----ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC-------CCeE------
Q 012799 173 --ELQCWDPQT-GKPSG----NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-------LRKC------ 232 (456)
Q Consensus 173 --~i~vwd~~~-~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-------~~~~------ 232 (456)
.|.+++... +.... ..+.. ......++.+|. ++.++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~----~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPI----NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTT----TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCC----CCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 266665443 22210 01111 122345555551 34455556677889999987 4442
Q ss_pred --------EEEecCcCccEEEEEeCCCC-eEEEE-eCCCcEEEEEC
Q 012799 233 --------VICLSGHTLAVTCVKWGGDG-VIYTG-SQDCTIKVWET 268 (456)
Q Consensus 233 --------~~~~~~~~~~v~~~~~~~~~-~l~~~-~~dg~i~iwd~ 268 (456)
+... +.......++|+|++ .|+.+ +..+.|+.++.
T Consensus 295 ~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 295 NNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp GCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 2222 223446789999999 45555 45677888554
No 291
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.97 E-value=0.014 Score=56.21 Aligned_cols=234 Identities=7% Similarity=-0.053 Sum_probs=141.0
Q ss_pred eEEEEECCCcEEEEeCCCCcceeEEe-cCCCCEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCCCccccccCcccceEEE
Q 012799 122 QLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHLVS-GSKAGELQCWDPQTGKPSGNPLSGHKKWITGI 199 (456)
Q Consensus 122 ~l~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 199 (456)
+|+.+ ....|+..++++......+. ..-..+..++|++.+..|+. -..++.|..++++...... ...........+
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~-v~~~g~~~P~Gl 85 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH-VVEFGLDYPEGM 85 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-EECSSCSCCCEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-EEeCCCCCcceE
Confidence 44444 45679999998655433332 23356889999986665554 4557889999987543322 222222345667
Q ss_pred EecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCC-CCeEEEEeC--CCcEEEEECCCCeEEEE
Q 012799 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQ--DCTIKVWETTQGKLIRE 276 (456)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~--dg~i~iwd~~~~~~~~~ 276 (456)
++.+. .++.+++-...+.|.+.++........+...-.....++++| .|.|+.... .+.|...++........
T Consensus 86 AvD~~----~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l 161 (628)
T 4a0p_A 86 AVDWL----GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL 161 (628)
T ss_dssp EEETT----TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred EEEeC----CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE
Confidence 76651 344555555678899999865443333333445678999998 456666553 56788888765433222
Q ss_pred eecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccc
Q 012799 277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM 356 (456)
Q Consensus 277 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 356 (456)
+ ........+++++.. +..+++-...+.|..+|+..... ..+
T Consensus 162 ~-~~~~~P~GlalD~~~-----------------------------------~~LY~aD~~~~~I~~~d~dG~~~--~v~ 203 (628)
T 4a0p_A 162 V-PNVGRANGLTIDYAK-----------------------------------RRLYWTDLDTNLIESSNMLGLNR--EVI 203 (628)
T ss_dssp E-CSCSSEEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTSCSC--EEE
T ss_pred E-CCCCCcceEEEcccc-----------------------------------CEEEEEECCCCEEEEEcCCCCce--EEe
Confidence 2 234456778887752 23355556677888888755433 223
Q ss_pred ccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799 357 TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG 400 (456)
Q Consensus 357 ~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 400 (456)
...-.....+++.. +.++++-...+.|...|..+|+....+..
T Consensus 204 ~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~ 246 (628)
T 4a0p_A 204 ADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQG 246 (628)
T ss_dssp EECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred eccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEec
Confidence 23333456777764 44445555578899999877766555543
No 292
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.97 E-value=0.0074 Score=52.86 Aligned_cols=157 Identities=8% Similarity=-0.083 Sum_probs=96.0
Q ss_pred cccEEEEEECCCCCeEE-EEECCCcEEEEeCCC----CcceeEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCC
Q 012799 108 TEAVLSVAFSPDGRQLA-SGSGDTTVRLWDLNT----QTPMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDPQT 181 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~-~~~~d~~v~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~ 181 (456)
...+.+++|++++..|+ +-..++.|..++... ......+...-.....+++.+.+. +.++-...+.|.+.++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 34578999998665555 444568999999876 222222332334568899987554 445556678999999875
Q ss_pred CCCccccccCcccceEEEEecccccCCCCCEEEEEeCC--CcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEEEe
Q 012799 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD--GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS 258 (456)
Q Consensus 182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~ 258 (456)
.... ............+++.| .+..++.+... +.|...++............-.....+++++++ .|+.+.
T Consensus 109 ~~~~-~~~~~~~~~P~~iavdp-----~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D 182 (316)
T 1ijq_A 109 VKRK-TLFRENGSKPRAIVVDP-----VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD 182 (316)
T ss_dssp SSEE-EEEECTTCCEEEEEEET-----TTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred CceE-EEEECCCCCcceEEeCC-----CCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEE
Confidence 4322 12222334567888887 55555555442 678888875433222222334567899999865 555554
Q ss_pred -CCCcEEEEECCC
Q 012799 259 -QDCTIKVWETTQ 270 (456)
Q Consensus 259 -~dg~i~iwd~~~ 270 (456)
..+.|..+|+..
T Consensus 183 ~~~~~I~~~d~dg 195 (316)
T 1ijq_A 183 SKLHSISSIDVNG 195 (316)
T ss_dssp TTTTEEEEEETTS
T ss_pred CCCCeEEEEecCC
Confidence 567899999874
No 293
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.95 E-value=0.0039 Score=60.10 Aligned_cols=230 Identities=10% Similarity=-0.017 Sum_probs=128.0
Q ss_pred CCCcEEEEeCCCCc-ceeEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCCccccccCcccceEEEEecccc
Q 012799 128 GDTTVRLWDLNTQT-PMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205 (456)
Q Consensus 128 ~d~~v~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 205 (456)
....|+..++.... ........-..+..++|++.+..|+.+. ..+.|..++++..................+++.+
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~-- 93 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW-- 93 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEET--
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEe--
Confidence 35678888887543 2222233455688999999766666554 4678999998765321112222224577888876
Q ss_pred cCCCCC-EEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCC-CeEEEEeC--CCcEEEEECCCCeEEEEeecCC
Q 012799 206 LNAPCR-RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQ--DCTIKVWETTQGKLIRELKGHG 281 (456)
Q Consensus 206 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~ 281 (456)
.+. .+++-...+.|.+.++........+...-.....++++|. |.|+.+.. .+.|...++.............
T Consensus 94 ---~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~ 170 (619)
T 3s94_A 94 ---LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI 170 (619)
T ss_dssp ---TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSC
T ss_pred ---cCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCC
Confidence 344 4445556788999998765433333334455678899885 46655553 3567777765433333332334
Q ss_pred cceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccc
Q 012799 282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361 (456)
Q Consensus 282 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 361 (456)
...+.+++++.. +..+++-...+.|..+|+...... ....+...
T Consensus 171 ~~P~Glald~~~-----------------------------------~~LY~aD~~~~~I~~~~~dG~~~~-~~~~~~~~ 214 (619)
T 3s94_A 171 YWPNGLTLDYEE-----------------------------------QKLYWADAKLNFIHKSNLDGTNRQ-AVVKGSLP 214 (619)
T ss_dssp SSEEEEEEETTT-----------------------------------TEEEEEETTTCCEEEESSSCCEEC---------
T ss_pred CCCcEEEEEccC-----------------------------------CEEEEEeCCCCeEEEecCCCCccE-EEEeCCCC
Confidence 456778887652 333555556678888886543221 11111122
Q ss_pred cEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEe
Q 012799 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR 399 (456)
Q Consensus 362 ~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 399 (456)
....+++..+ .+.++-...+.|...|..+|+....+.
T Consensus 215 ~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~ 251 (619)
T 3s94_A 215 HPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIH 251 (619)
T ss_dssp -CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECC
T ss_pred CceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEe
Confidence 3356777655 444555567789999988876555443
No 294
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.94 E-value=0.0027 Score=55.35 Aligned_cols=196 Identities=15% Similarity=0.244 Sum_probs=119.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCE--EEEE--eC--CCcEEEEECC--CCeE
Q 012799 161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRR--FVSA--SK--DGDARIWDVS--LRKC 232 (456)
Q Consensus 161 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--l~~~--~~--dg~i~iwd~~--~~~~ 232 (456)
...+++.....+-+.+||+ +|+.+.. +.. +.+..+..-|. +...+.. ++.+ -. +++|.+|++. ++ .
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~-~~~--g~~nnVD~r~~-~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHS-YNT--GKLNNVDIRYD-FPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-T 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEE-ECC--SCEEEEEEEEE-EEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-C
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEE-ccC--CCcccEEEecc-cccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-c
Confidence 3456666677889999999 6776653 221 45666665551 1112222 3333 33 5789999773 33 3
Q ss_pred EEEecC------cC-ccEEEEEe--CCC-C--eEEEEeCCCcEEEEECC-------CCeEEEEeecCCcceEEEEecCcc
Q 012799 233 VICLSG------HT-LAVTCVKW--GGD-G--VIYTGSQDCTIKVWETT-------QGKLIRELKGHGHWVNSLALSTEY 293 (456)
Q Consensus 233 ~~~~~~------~~-~~v~~~~~--~~~-~--~l~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~i~~~~~~~~~ 293 (456)
+..+.. .. ..+..+++ ++. + ++++...+|.+..|++. +.+.++++... +.+..+...+.
T Consensus 113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~- 190 (355)
T 3amr_A 113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDE- 190 (355)
T ss_dssp EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETT-
T ss_pred eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCC-
Confidence 444422 11 44556666 663 4 68888899999999882 33556666643 45666666655
Q ss_pred eeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCC--C--Ccccc-ccc-cccEeEEE
Q 012799 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK--Q--PKTRM-TGH-QQLVNHVY 367 (456)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~--~~~~~-~~~-~~~v~~~~ 367 (456)
...|+.+-++.-|..++..... . .+... .++ ...+..|+
T Consensus 191 -----------------------------------~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLa 235 (355)
T 3amr_A 191 -----------------------------------YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLT 235 (355)
T ss_dssp -----------------------------------TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEE
T ss_pred -----------------------------------CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEE
Confidence 4568888888777777744221 1 22222 122 23578887
Q ss_pred E--CCCCC-EEEEEE-CCCcEEEEeCC-CCeEEEEEe
Q 012799 368 F--SPDGQ-WVASAS-FDKSIKLWNGT-TGKFVAVFR 399 (456)
Q Consensus 368 ~--sp~~~-~l~s~~-~dg~i~iwd~~-~~~~~~~~~ 399 (456)
+ .++++ +|++++ .+++..+||.. +.+.+..|.
T Consensus 236 i~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 236 IYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 7 55655 655555 67799999996 677777775
No 295
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.92 E-value=0.0071 Score=52.78 Aligned_cols=162 Identities=11% Similarity=0.163 Sum_probs=102.3
Q ss_pred CCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCC----CC---EEEEEeC---CCeEEEEeCC--CCCCccc
Q 012799 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD----GK---HLVSGSK---AGELQCWDPQ--TGKPSGN 187 (456)
Q Consensus 120 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~s~~~---dg~i~vwd~~--~~~~~~~ 187 (456)
..+++.....+-+.+||+ +++.+..+.. +.++.+..-|+ |+ ++++... +++|.+|++. ++. +..
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~ 115 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS 115 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence 345665667788999999 7888888753 56777777663 22 2333333 5789999663 433 211
Q ss_pred ccc---C--cc-cceEEEEe--cccccCCCCC-EEEEEeCCCcEEEEECC-------CCeEEEEecCcCccEEEEEeCCC
Q 012799 188 PLS---G--HK-KWITGISW--EPVHLNAPCR-RFVSASKDGDARIWDVS-------LRKCVICLSGHTLAVTCVKWGGD 251 (456)
Q Consensus 188 ~~~---~--~~-~~v~~~~~--~~~~~~~~~~-~l~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~v~~~~~~~~ 251 (456)
... . .. ..+..+++ +|. .+. ++++...+|.+..|++. +.+.++++.. ...+..+..++.
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~----~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~ 190 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQK----TGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDE 190 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTT----TCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETT
T ss_pred ccccccCcCCCCCCeeEEEEEecCC----CCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCC
Confidence 101 0 11 45666776 441 233 67788889999999882 3455666654 356777888875
Q ss_pred C-eEEEEeCCCcEEEEECC-----CCeEEEEeec--CCcceEEEEec
Q 012799 252 G-VIYTGSQDCTIKVWETT-----QGKLIRELKG--HGHWVNSLALS 290 (456)
Q Consensus 252 ~-~l~~~~~dg~i~iwd~~-----~~~~~~~~~~--~~~~i~~~~~~ 290 (456)
. .|+.+-.+.-|..++.+ +++.+..+.. ....+..+++-
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~ 237 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIY 237 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEE
Confidence 5 99999999778888865 3455555421 22357777764
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.89 E-value=0.0058 Score=52.82 Aligned_cols=154 Identities=6% Similarity=0.053 Sum_probs=97.1
Q ss_pred eEEEEecccccCCCCCEEEEEe-CCCcEEEEECCCCeEEEEecCc-------CccEEEEEe---CCCCeEEEEeC-----
Q 012799 196 ITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVICLSGH-------TLAVTCVKW---GGDGVIYTGSQ----- 259 (456)
Q Consensus 196 v~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~---~~~~~l~~~~~----- 259 (456)
-.++.|++ ....|..++ ..+.|..||...+......... ...+..+.| .+++.|++...
T Consensus 15 PE~~~wd~-----~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 15 PEDTIYDR-----TRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp CSCEEEET-----TTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred CcCccCcC-----CCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 45677876 445666666 6899999999765433332211 124689999 68884444322
Q ss_pred ---------CCcEEEEECC---CCeEEEEeec-------------CCcceEEEEecCcceeeeccccCCCCccCChHHHH
Q 012799 260 ---------DCTIKVWETT---QGKLIRELKG-------------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK 314 (456)
Q Consensus 260 ---------dg~i~iwd~~---~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (456)
+..|..||+. +++.+..... .......++..++
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~---------------------- 147 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD---------------------- 147 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT----------------------
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCC----------------------
Confidence 5779999999 7776654431 1124677777777
Q ss_pred HHHHhhhhhccCCCCCEEEEEeCC-CcEEEEecCCCCCCcccc-----ccccccEeEEEECCCCCEEEEEECCCcEEEEe
Q 012799 315 KAALERYNKIKGNAPERLVSGSDD-FTMFLWEPAVSKQPKTRM-----TGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388 (456)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~-----~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd 388 (456)
++..++++.. +.|...+.... ...... .......+.|+++|+|+.|++....|.+..+|
T Consensus 148 --------------GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD 212 (334)
T 2p9w_A 148 --------------GNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFD 212 (334)
T ss_dssp --------------SCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred --------------CCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence 4446666666 66666653322 111100 11122367899999999888876799999999
Q ss_pred CCC
Q 012799 389 GTT 391 (456)
Q Consensus 389 ~~~ 391 (456)
+.+
T Consensus 213 ~~~ 215 (334)
T 2p9w_A 213 VSK 215 (334)
T ss_dssp CSS
T ss_pred CCC
Confidence 874
No 297
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.85 E-value=0.011 Score=50.66 Aligned_cols=233 Identities=11% Similarity=0.117 Sum_probs=143.0
Q ss_pred CCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCC
Q 012799 129 DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNA 208 (456)
Q Consensus 129 d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 208 (456)
+..|.|.|+.++....+.. -..-+.-.+|..+.||.-. ...+.++|+++.+.+.... ....|.-=.|-.
T Consensus 48 ~~~VvIiDl~n~~~~~Rrp---i~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~--~~e~VvfWkWis----- 116 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWIS----- 116 (365)
T ss_dssp EEEEEEEETTSTTSCEEEE---CCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE--CSSCEEEEEECS-----
T ss_pred CCEEEEEECCCCCCccccc---cccceeeeCCCccEEEEec-CCeEEEechHHhhhhccee--cCCccEEEEecC-----
Confidence 3478899998765543321 1223445688888877765 6789999999887654222 134555555543
Q ss_pred CCCEEEEEeCCCcEEEEECCC-CeEEEEecCc----CccEEEEEeCCCC--eEEEEe------CCCcEEEEECCCCeEEE
Q 012799 209 PCRRFVSASKDGDARIWDVSL-RKCVICLSGH----TLAVTCVKWGGDG--VIYTGS------QDCTIKVWETTQGKLIR 275 (456)
Q Consensus 209 ~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~----~~~v~~~~~~~~~--~l~~~~------~dg~i~iwd~~~~~~~~ 275 (456)
.+.|+..+. ..|+-|++.. ..+.+.+..| ...|.....+++. .+++|- -.|.+.+|..+. +.-+
T Consensus 117 -~~~L~lVT~-taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ 193 (365)
T 2xzh_A 117 -LNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQ 193 (365)
T ss_dssp -SSEEEEEES-SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEE
T ss_pred -CCeEEEEcC-CcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccc
Confidence 345665554 5799999974 3455555444 3467777778877 333332 236788999875 4556
Q ss_pred EeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC---CCcEEEEecCCC---
Q 012799 276 ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD---DFTMFLWEPAVS--- 349 (456)
Q Consensus 276 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~--- 349 (456)
.+.+|......+.+..+.. +...++.+.. .+.+++.++...
T Consensus 194 ~ieGhaa~F~~~~~~g~~~---------------------------------~~~lf~fa~r~~~g~kLhIiEi~~~~~~ 240 (365)
T 2xzh_A 194 PIEGHAASFAQFKMEGNAE---------------------------------ESTLFCFAVRGQAGGKLHIIEVGTPPTG 240 (365)
T ss_dssp EECCSEEEEEEECCTTCSS---------------------------------CEEEEEEEEEETTEEEEEEEECSSCCTT
T ss_pred eeeeeeeeeEEEecCCCCC---------------------------------CceEEEEEEecCCCcEEEEEEcCCCCCC
Confidence 6777766655554432210 0112332222 258888887433
Q ss_pred CCCccc-----c---ccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799 350 KQPKTR-----M---TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408 (456)
Q Consensus 350 ~~~~~~-----~---~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 408 (456)
..+..+ + ..-.+-.-++..|+.-..++.-+.-|.+++||+++|.++..-+-..++|..-
T Consensus 241 ~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~t 307 (365)
T 2xzh_A 241 NQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVT 307 (365)
T ss_dssp CCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred CCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEe
Confidence 111110 1 1123445677888877788888999999999999999998777656666544
No 298
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.84 E-value=0.0021 Score=55.56 Aligned_cols=156 Identities=4% Similarity=0.032 Sum_probs=103.6
Q ss_pred cEEEEEECCCCCeEEEEE-CCCcEEEEeCCCCcceeEEecC-------CCCEEEEEE---cCCCCEEEEEe---------
Q 012799 110 AVLSVAFSPDGRQLASGS-GDTTVRLWDLNTQTPMFKCTGH-------KNWVLCIAW---SADGKHLVSGS--------- 169 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~~~~-~d~~v~vwd~~~~~~~~~~~~~-------~~~v~~~~~---~~~~~~l~s~~--------- 169 (456)
--.+++|++....|..++ ..++|..|+...+......... ...+..|.| .|+++++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 334689988666666666 7899999998755433222211 114689999 68877777543
Q ss_pred ----CCCeEEEEeCC---CCCCcccc-ccC-----------cccceEEEEecccccCCCCCEEEEEeCC-CcEEEEECCC
Q 012799 170 ----KAGELQCWDPQ---TGKPSGNP-LSG-----------HKKWITGISWEPVHLNAPCRRFVSASKD-GDARIWDVSL 229 (456)
Q Consensus 170 ----~dg~i~vwd~~---~~~~~~~~-~~~-----------~~~~v~~~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~ 229 (456)
.+..|..+|+. +++..... +.. -......++..+ +|+..++++.. +.|...+...
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-----~GnaYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-----DGNSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-----TSCEEEEEEESSCEEEEECTTS
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-----CCCEEEeCCCCCCeEEEEeCCC
Confidence 26779999998 77664321 111 112467888877 89999999888 8887777654
Q ss_pred CeEEEEe-cC----cCccEEEEEeCCCC-eEEEEeCCCcEEEEECCC
Q 012799 230 RKCVICL-SG----HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQ 270 (456)
Q Consensus 230 ~~~~~~~-~~----~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~~ 270 (456)
.....-. .. .....+.|+++|++ .|++....|.+..+|+.+
T Consensus 169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 4222111 11 12236689999999 777776699999999884
No 299
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.77 E-value=0.019 Score=51.14 Aligned_cols=104 Identities=13% Similarity=0.211 Sum_probs=59.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc--c--cccCcccceEEEEecccccCCCCCEEEEEeC-C-----
Q 012799 150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG--N--PLSGHKKWITGISWEPVHLNAPCRRFVSASK-D----- 219 (456)
Q Consensus 150 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~--~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-d----- 219 (456)
-.....++|.|+|++++ +..+|.|.+++ .++... . ...........++++|.- . .+..|.++.. .
T Consensus 30 l~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf-~-~~g~lYv~~~~~~~~~~ 104 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRF-P-QEPYVYAYRTVAEGGLR 104 (352)
T ss_dssp CSCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTT-T-TSCEEEEEEEECTTSSE
T ss_pred CCCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCC-C-CCCEEEEEEecCCCCCc
Confidence 34578999999998544 56679999998 333210 0 111223567899999820 0 0344444433 2
Q ss_pred CcEEEEECCCC-----eEEE-Eec---CcCccEEEEEeCCCCeEEEEe
Q 012799 220 GDARIWDVSLR-----KCVI-CLS---GHTLAVTCVKWGGDGVIYTGS 258 (456)
Q Consensus 220 g~i~iwd~~~~-----~~~~-~~~---~~~~~v~~~~~~~~~~l~~~~ 258 (456)
+.|..++.... +.+. .+. ........++|.|+|.|+.+.
T Consensus 105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 56888877643 1121 132 111233578999999555543
No 300
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.76 E-value=0.02 Score=51.20 Aligned_cols=233 Identities=11% Similarity=0.110 Sum_probs=144.4
Q ss_pred CCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCC
Q 012799 129 DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNA 208 (456)
Q Consensus 129 d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 208 (456)
+..|.|.|+.++....+-. -..-+.-.+|..+.||.-. ..++.++|+++...+..... ...|.-=.|-.
T Consensus 47 ~~~vvIiDl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~--~e~VvfWkWis----- 115 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM--TDDVTFWKWIS----- 115 (494)
T ss_dssp CCEEEEEETTSTTSCEEEE---CCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC--SSCCCEEEEEE-----
T ss_pred CCeEEEEECCCCCcceecc---cccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec--CCCceEEEecC-----
Confidence 3478899998765543321 1223456788888777665 67899999998776542221 23454445543
Q ss_pred CCCEEEEEeCCCcEEEEECCC-CeEEEEecCc----CccEEEEEeCCCC--eEEEEe------CCCcEEEEECCCCeEEE
Q 012799 209 PCRRFVSASKDGDARIWDVSL-RKCVICLSGH----TLAVTCVKWGGDG--VIYTGS------QDCTIKVWETTQGKLIR 275 (456)
Q Consensus 209 ~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~----~~~v~~~~~~~~~--~l~~~~------~dg~i~iwd~~~~~~~~ 275 (456)
.+.|+..+. ..|+-|++.. ..+...+..| ...|.....+++. .+++|- -.|.+.+|..+. +.-+
T Consensus 116 -~~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ 192 (494)
T 1bpo_A 116 -LNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQ 192 (494)
T ss_dssp -TTEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEE
T ss_pred -CCeEEEEcC-CeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccc
Confidence 245555554 6799999964 3455555444 3567777778877 333332 246788999875 4556
Q ss_pred EeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC---CCcEEEEecCCC---
Q 012799 276 ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD---DFTMFLWEPAVS--- 349 (456)
Q Consensus 276 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~--- 349 (456)
.+.+|......+.+..+.. +...++.+.. .+.+.+.++...
T Consensus 193 ~ieGhaa~F~~~~~~g~~~---------------------------------~~~lf~fa~r~~~g~kLhi~Ei~~~~~~ 239 (494)
T 1bpo_A 193 PIEGHAASFAQFKMEGNAE---------------------------------ESTLFCFAVRGQAGGKLHIIEVGTPPTG 239 (494)
T ss_dssp EECCSEEEEEEEECTTCSS---------------------------------EEEEEEEEECSTTCCEEEEEECSCCCTT
T ss_pred hheeeeeeeEEEecCCCCC---------------------------------CceEEEEEEecCCCcEEEEEEcCCCccC
Confidence 6777777666555543210 0112333333 268888887543
Q ss_pred CCCcc-----cc---ccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEE
Q 012799 350 KQPKT-----RM---TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408 (456)
Q Consensus 350 ~~~~~-----~~---~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 408 (456)
..+.. .. ..-.+-..++..|+.-..++.-+.-|.+++||+++|.++..-+-...+|..-
T Consensus 240 ~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t 306 (494)
T 1bpo_A 240 NQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVT 306 (494)
T ss_dssp CCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred CCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEe
Confidence 11110 01 1123445678888887888889999999999999999988776555665544
No 301
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.69 E-value=0.0097 Score=53.11 Aligned_cols=147 Identities=17% Similarity=0.196 Sum_probs=97.9
Q ss_pred ECCCCCeEEEEECCCcEEEEeCCCCcceeEEecC----CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc----
Q 012799 116 FSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGH----KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN---- 187 (456)
Q Consensus 116 ~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---- 187 (456)
...+|..++.+- ++.||..++.....-+.+... -..|..+..+|+|++||..+.. .|.|-.+..+.....
T Consensus 28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHH
T ss_pred EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCccccc
Confidence 344666666663 578888888755544454432 2367889999999999998654 788888774321110
Q ss_pred -------ccc------CcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC--eEEEEec---------CcCccE
Q 012799 188 -------PLS------GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR--KCVICLS---------GHTLAV 243 (456)
Q Consensus 188 -------~~~------~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~---------~~~~~v 243 (456)
.+. ....+|..+.|+|... .+..|++-..|+.|++||+... ++. .++ .....|
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~--~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev 182 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSY--RDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDI 182 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBG--GGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccC--CCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceE
Confidence 000 1246799999999654 5689999999999999999752 222 222 222568
Q ss_pred EEEEeCCCC-eEEEEe--CCCcEEEEE
Q 012799 244 TCVKWGGDG-VIYTGS--QDCTIKVWE 267 (456)
Q Consensus 244 ~~~~~~~~~-~l~~~~--~dg~i~iwd 267 (456)
.+++|.+++ .|++.+ ..|.|+-.-
T Consensus 183 ~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 183 TDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp EEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred EEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 889998877 555544 667766543
No 302
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.67 E-value=0.035 Score=53.59 Aligned_cols=186 Identities=8% Similarity=-0.140 Sum_probs=109.6
Q ss_pred EEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEE-EEEeCCCcEEEEECCCCeEEEEecCcCcc
Q 012799 164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLA 242 (456)
Q Consensus 164 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 242 (456)
+|+.+ ..+.|+..++++...........-....+++|++ .+..+ ++-..++.|+.+++........+......
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~-----~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~ 81 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDV-----TDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDY 81 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEET-----TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSC
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEEC-----CCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCC
Confidence 44444 4568999999865432212222234678899987 44444 45556788999988765433333332344
Q ss_pred EEEEEeCCCC-eE-EEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhh
Q 012799 243 VTCVKWGGDG-VI-YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320 (456)
Q Consensus 243 v~~~~~~~~~-~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (456)
...+++++.+ .| ++-...+.|.+.++........+.........+++.|..
T Consensus 82 P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~--------------------------- 134 (628)
T 4a0p_A 82 PEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAE--------------------------- 134 (628)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTT---------------------------
T ss_pred cceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCC---------------------------
Confidence 6678887644 44 444556789999987543322232333456788888752
Q ss_pred hhhccCCCCCEEEEE-eCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEE-CCCcEEEEeCCCC
Q 012799 321 YNKIKGNAPERLVSG-SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTG 392 (456)
Q Consensus 321 ~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~ 392 (456)
+..+++- +..+.|...++..... . .+...-.....++++++++.|+.+. ..+.|..+|+...
T Consensus 135 --------G~lY~tD~g~~~~I~r~~~dG~~~-~-~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 135 --------GFMYWTEWGGKPKIDRAAMDGSER-T-TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL 198 (628)
T ss_dssp --------TEEEEEECSSSCEEEEEETTSCSC-E-EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred --------CeEEEeCCCCCCEEEEEeCCCCce-E-EEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence 2223332 2245677776543322 1 1222345678999999777666654 4578999998654
No 303
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.65 E-value=0.017 Score=53.46 Aligned_cols=136 Identities=10% Similarity=0.037 Sum_probs=78.2
Q ss_pred CEEEEEEcC-CCCEEEEEeC-CCeEEEEeCCCCCCccccccC--cccceEEEEe-------cccccCCCCCEEEEEeCCC
Q 012799 152 WVLCIAWSA-DGKHLVSGSK-AGELQCWDPQTGKPSGNPLSG--HKKWITGISW-------EPVHLNAPCRRFVSASKDG 220 (456)
Q Consensus 152 ~v~~~~~~~-~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~--~~~~v~~~~~-------~~~~~~~~~~~l~~~~~dg 220 (456)
....|+|.| ++..|+.+.. .+.|++.|++++........+ .......++| ++ ++.+++++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-----~G~~lyvad~~~ 214 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-----EAEYMIVAIDYD 214 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-----TTCEEEEEECCC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-----CCCEEEEEeCCC
Confidence 467899998 3555555444 467999998876654311111 1234788888 77 888666666544
Q ss_pred -------cEEEEECCC-CeEE-----EEecCcCccEEEEEeCCC-Ce-EEEEeCCCcEEEEECC-------CCeE-----
Q 012799 221 -------DARIWDVSL-RKCV-----ICLSGHTLAVTCVKWGGD-GV-IYTGSQDCTIKVWETT-------QGKL----- 273 (456)
Q Consensus 221 -------~i~iwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~-~~-l~~~~~dg~i~iwd~~-------~~~~----- 273 (456)
.|.+++... +... ..+... .....++++|+ +. +++-..++.|..+|+. ++..
T Consensus 215 ~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~ 293 (496)
T 3kya_A 215 GKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV 293 (496)
T ss_dssp TTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred CCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc
Confidence 266665333 1111 111111 22346778884 44 4455567789999987 4543
Q ss_pred ------EEE-ee-cCCcceEEEEecCcc
Q 012799 274 ------IRE-LK-GHGHWVNSLALSTEY 293 (456)
Q Consensus 274 ------~~~-~~-~~~~~i~~~~~~~~~ 293 (456)
... +. ........++++|++
T Consensus 294 ~~~~g~~~~l~~~~~~~~p~~ia~~p~G 321 (496)
T 3kya_A 294 KNNPNTFKQLFTIADPSWEFQIFIHPTG 321 (496)
T ss_dssp GGCTTTEEEEEECSSSSCCEEEEECTTS
T ss_pred cccccccceeEecCCCCCceEEEEcCCC
Confidence 112 11 123445788888873
No 304
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.62 E-value=0.029 Score=49.90 Aligned_cols=72 Identities=13% Similarity=0.009 Sum_probs=46.3
Q ss_pred ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCc-ceeEE---ecCCCCEEEEEEcCC---CCEEEEEeC----C----Ce
Q 012799 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-PMFKC---TGHKNWVLCIAWSAD---GKHLVSGSK----A----GE 173 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~-~~~~~---~~~~~~v~~~~~~~~---~~~l~s~~~----d----g~ 173 (456)
.....++|.|+|+++++ ..+|.|++++. +++ .+..+ .........|+++|+ +..|+.+.. + +.
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 45678999999985554 56799999973 444 22211 122456899999997 555554433 3 56
Q ss_pred EEEEeCCCC
Q 012799 174 LQCWDPQTG 182 (456)
Q Consensus 174 i~vwd~~~~ 182 (456)
|..|+...+
T Consensus 107 v~r~~~~~~ 115 (354)
T 3a9g_A 107 VIRGRLDGS 115 (354)
T ss_dssp EEEEEECSS
T ss_pred EEEEEECCC
Confidence 777776644
No 305
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.61 E-value=0.0085 Score=52.00 Aligned_cols=145 Identities=17% Similarity=0.243 Sum_probs=73.1
Q ss_pred CCCeEEEEE-CC-----CcEEEEeCCCCccee--EEecCCCCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCC--
Q 012799 119 DGRQLASGS-GD-----TTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSADGKHLVSGSKA-----GELQCWDPQTGK-- 183 (456)
Q Consensus 119 ~~~~l~~~~-~d-----~~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~-- 183 (456)
++.+++.|+ .+ ..+.+||..+.+-.. .+.........+. .++..++.|+.+ ..+.+||+.+++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 345566665 22 368888887654211 1111111112222 256777777765 358999988776
Q ss_pred -Cccc-cccCcccceEEEEecccccCCCCCEEEEEeCC-----CcEEEEECCCCeEEE--EecCcCccEEEEEeCCCC-e
Q 012799 184 -PSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKD-----GDARIWDVSLRKCVI--CLSGHTLAVTCVKWGGDG-V 253 (456)
Q Consensus 184 -~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~-~ 253 (456)
-... .+.........+.. ++..++.|+.+ ..+.+||+.+.+-.. .+........++.+ ++ .
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~-------~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 162 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL-------GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVI 162 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE-------TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEE
T ss_pred eeEECCCCCCCccceeEEEE-------CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEE
Confidence 2211 11111111112221 45677777654 358899987765332 22211122222222 44 5
Q ss_pred EEEEeCC-----CcEEEEECCCCeEE
Q 012799 254 IYTGSQD-----CTIKVWETTQGKLI 274 (456)
Q Consensus 254 l~~~~~d-----g~i~iwd~~~~~~~ 274 (456)
++.|+.+ ..+.+||+.+.+-.
T Consensus 163 yv~GG~~~~~~~~~~~~~d~~~~~W~ 188 (301)
T 2vpj_A 163 YCLGGYDGLNILNSVEKYDPHTGHWT 188 (301)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred EEECCCCCCcccceEEEEeCCCCcEE
Confidence 5556544 45888998876543
No 306
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.60 E-value=0.007 Score=53.88 Aligned_cols=101 Identities=15% Similarity=0.134 Sum_probs=59.4
Q ss_pred ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcc--eeEEe---cCCCCEEEEEEcCC---CCEEEEEeC-C-----CeE
Q 012799 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP--MFKCT---GHKNWVLCIAWSAD---GKHLVSGSK-A-----GEL 174 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~l~s~~~-d-----g~i 174 (456)
..-..++|.|+|+++++ ..+|.|++++ .++. +..+. ........|+|+|+ +..|+.+.. . +.|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 34678999999985554 5679999998 3332 11111 22457899999998 555554433 2 568
Q ss_pred EEEeCCCCCC-----cccccc---CcccceEEEEecccccCCCCCEEEEEe
Q 012799 175 QCWDPQTGKP-----SGNPLS---GHKKWITGISWEPVHLNAPCRRFVSAS 217 (456)
Q Consensus 175 ~vwd~~~~~~-----~~~~~~---~~~~~v~~~~~~~~~~~~~~~~l~~~~ 217 (456)
..++...+.. +...+. ........++|.| +|.++++.+
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-----dG~Lyv~~G 153 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-----DGMLYVTTG 153 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-----TSCEEEECC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-----CCCEEEEEC
Confidence 8888764321 110011 1111235678877 886666643
No 307
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.53 E-value=0.043 Score=48.76 Aligned_cols=106 Identities=16% Similarity=0.186 Sum_probs=58.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC-Cccc--cccCcccceEEEEecccccCCCCCEEEEEeC---C----
Q 012799 150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK-PSGN--PLSGHKKWITGISWEPVHLNAPCRRFVSASK---D---- 219 (456)
Q Consensus 150 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~---d---- 219 (456)
-.....++|.|+|+ |+++..+|.|.+++. +++ .+.. ...........++++|. +..++..+++-+. +
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pd-f~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPE-FPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTT-TTTSCEEEEEEEEECGGGCEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCC-CCcCCEEEEEEeccCCCCCcc
Confidence 34578999999997 555566799999973 443 1110 01122345788999882 1112334443332 3
Q ss_pred CcEEEEECCCC-------eEE-EEec-CcCccEEEEEeCCCCeEEEEe
Q 012799 220 GDARIWDVSLR-------KCV-ICLS-GHTLAVTCVKWGGDGVIYTGS 258 (456)
Q Consensus 220 g~i~iwd~~~~-------~~~-~~~~-~~~~~v~~~~~~~~~~l~~~~ 258 (456)
+.|..|+.... +.+ ..+. ........++|.|+|.|+.+.
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT 152 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence 56777776543 111 1122 111224578999999555543
No 308
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.52 E-value=0.015 Score=51.36 Aligned_cols=188 Identities=12% Similarity=0.118 Sum_probs=102.0
Q ss_pred CCCeEEEEeCCCC--CCccccccC-----cccceEEEEecccccCCCCC-EEEEE-eC--CCcEEEEECCCC--e--EEE
Q 012799 170 KAGELQCWDPQTG--KPSGNPLSG-----HKKWITGISWEPVHLNAPCR-RFVSA-SK--DGDARIWDVSLR--K--CVI 234 (456)
Q Consensus 170 ~dg~i~vwd~~~~--~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~-~l~~~-~~--dg~i~iwd~~~~--~--~~~ 234 (456)
.+|.|.++|.++. +.......+ ..-....+.+.+. .++. +|+++ .. +..|.+|++... . .+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d---~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~ 157 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID---DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK 157 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEEC---TTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEEC---CCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEe
Confidence 6889999998743 221111111 1224455555442 1333 34333 32 467778776542 2 233
Q ss_pred EecCc-CccEEEEEeCCCCeEEEEeC------------------CCcEEEEECCCCeEEEEeecCCcceEEEEecCccee
Q 012799 235 CLSGH-TLAVTCVKWGGDGVIYTGSQ------------------DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL 295 (456)
Q Consensus 235 ~~~~~-~~~v~~~~~~~~~~l~~~~~------------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 295 (456)
.+.+. -...+.+.+.++|.++++.. .|.|..+|.. +. ..+...-..-+.++++|++.
T Consensus 158 ~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~-~~~~~~l~~pNGia~spDg~- 233 (355)
T 3sre_A 158 TIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DV-RVVAEGFDFANGINISPDGK- 233 (355)
T ss_dssp EECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CC-EEEEEEESSEEEEEECTTSS-
T ss_pred ccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eE-EEeecCCcccCcceECCCCC-
Confidence 33322 24578999999996555543 2456556553 22 22222234467899998842
Q ss_pred eeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCc--cccccccccEeEEEECC-CC
Q 012799 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK--TRMTGHQQLVNHVYFSP-DG 372 (456)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~sp-~~ 372 (456)
..+++-+..+.|..|++....... ..+ ......-.+++.+ +|
T Consensus 234 ----------------------------------~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G 278 (355)
T 3sre_A 234 ----------------------------------YVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTG 278 (355)
T ss_dssp ----------------------------------EEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTC
T ss_pred ----------------------------------EEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCC
Confidence 224455567899999976433221 112 2245677899999 59
Q ss_pred CEEEEEECC-CcEEEEeCC--CCeEEEEEe
Q 012799 373 QWVASASFD-KSIKLWNGT--TGKFVAVFR 399 (456)
Q Consensus 373 ~~l~s~~~d-g~i~iwd~~--~~~~~~~~~ 399 (456)
++.+++..+ +.|..|+.. .+..+..++
T Consensus 279 ~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 279 DLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp CEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred cEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 987766644 355555543 255555554
No 309
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.48 E-value=0.00042 Score=67.90 Aligned_cols=156 Identities=8% Similarity=-0.076 Sum_probs=89.3
Q ss_pred ccEEEEEECCCCCeEEEEE-CCCcEEEEeCCC----CcceeEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCC
Q 012799 109 EAVLSVAFSPDGRQLASGS-GDTTVRLWDLNT----QTPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTG 182 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~-~d~~v~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~ 182 (456)
..+..++|++.+..|+.+. ..+.|+.+++.+ ......+.........|++.+. ++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3566889998766665553 567899999875 2222222222234566888754 444455455678999998754
Q ss_pred CCccccccCcccceEEEEecccccCCCCCEEEEEeC--CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEEE-Ee
Q 012799 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYT-GS 258 (456)
Q Consensus 183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~-~~ 258 (456)
.... ...........+++.| .+..|+.+.. .+.|..+++........+...-.....|++++++ .|+. -+
T Consensus 486 ~~~~-l~~~~~~~P~giavDp-----~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~ 559 (699)
T 1n7d_A 486 KRKT-LFREQGSKPRAIVVDP-----VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS 559 (699)
T ss_dssp CEEE-ECCCSSCCCCCEECCS-----SSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEET
T ss_pred ceEE-EEeCCCCCcceEEEcc-----CCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEec
Confidence 3221 2222223456677776 4444444432 2678877765433222222223445678999865 4444 44
Q ss_pred CCCcEEEEECCC
Q 012799 259 QDCTIKVWETTQ 270 (456)
Q Consensus 259 ~dg~i~iwd~~~ 270 (456)
..+.|..+|+..
T Consensus 560 ~~~~I~~~d~dG 571 (699)
T 1n7d_A 560 KLHSISSIDVNG 571 (699)
T ss_dssp TTTEEEEECSSS
T ss_pred CCCeEEEEccCC
Confidence 567899998864
No 310
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.43 E-value=0.1 Score=54.18 Aligned_cols=226 Identities=13% Similarity=0.055 Sum_probs=125.8
Q ss_pred EEEEECCCcEEEEeCCCCcce--eEEecCCCCEEEEEEcCCCCEEEEEeCC-----------------------------
Q 012799 123 LASGSGDTTVRLWDLNTQTPM--FKCTGHKNWVLCIAWSADGKHLVSGSKA----------------------------- 171 (456)
Q Consensus 123 l~~~~~d~~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~d----------------------------- 171 (456)
++.. .++.++|..+++.+.. .++. -...+..++++|+.+.++.+..+
T Consensus 709 ~v~~-~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1158)
T 3ei3_A 709 LALA-NNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSS 786 (1158)
T ss_dssp EEEE-CSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCC
T ss_pred EEEE-cCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccc
Confidence 4433 3456888887643322 2222 34567888888877665544311
Q ss_pred --------------------CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEe----------CCCc
Q 012799 172 --------------------GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS----------KDGD 221 (456)
Q Consensus 172 --------------------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~----------~dg~ 221 (456)
+.|++.|..+.+.+..........+.+++..... +....++++|+ ..|.
T Consensus 787 ~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~-~~~~~~lvVGTa~~~~~e~~~~~Gr 865 (1158)
T 3ei3_A 787 KLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLG-KDPNTYFIVGTAMVYPEEAEPKQGR 865 (1158)
T ss_dssp CCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCT-TCCCCEEEEEEEECCTTCSSCCCEE
T ss_pred ccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEc-cCCCEEEEEEeeecCCCCCCCCceE
Confidence 2356666655554332222333445555543322 11346888876 3578
Q ss_pred EEEEECCCCeEEEEe-cCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEE-eecCCcceEEEEecCcceeeecc
Q 012799 222 ARIWDVSLRKCVICL-SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRE-LKGHGHWVNSLALSTEYALRTGA 299 (456)
Q Consensus 222 i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~ 299 (456)
|++|++..++..... ....+++++++--. |+|++|- ...|++|++...+.++. ..... .+..+.....
T Consensus 866 i~vf~v~~~kL~lv~~~~v~g~v~al~~~~-g~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~-~i~~~~l~~~------- 935 (1158)
T 3ei3_A 866 IVVFQYSDGKLQTVAEKEVKGAVYSMVEFN-GKLLASI-NSTVRLYEWTTEKELRTECNHYN-NIMALYLKTK------- 935 (1158)
T ss_dssp EEEEEEETTEEEEEEEEEESSCEEEEEEET-TEEEEEE-TTEEEEEEECTTSCEEEEEEECC-CSCEEEEEEE-------
T ss_pred EEEEEEECCEEEEEEEEEcCCcCEEEeeeC-CEEEEEc-CCEEEEEECCCCceEEEEeeccc-cEEEEEEecc-------
Confidence 999998755432222 23467888888553 4666554 47899999987654431 11011 1111111111
Q ss_pred ccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccc--ccccccEeEEEECCCCCEEEE
Q 012799 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM--TGHQQLVNHVYFSPDGQWVAS 377 (456)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~s 377 (456)
+++++.|..-..+.++..+........+ ..+..+++++.+-.+ ..++.
T Consensus 936 -----------------------------~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~ 985 (1158)
T 3ei3_A 936 -----------------------------GDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDD-DNFLG 985 (1158)
T ss_dssp -----------------------------TTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEET-TEEEE
T ss_pred -----------------------------CCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEcc-CcEEE
Confidence 4568888877777765543322222222 234567888888644 46777
Q ss_pred EECCCcEEEEeCCC
Q 012799 378 ASFDKSIKLWNGTT 391 (456)
Q Consensus 378 ~~~dg~i~iwd~~~ 391 (456)
+..+|.+.+.....
T Consensus 986 aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 986 AENAFNLFVCQKDS 999 (1158)
T ss_dssp EETTSEEEEEEECT
T ss_pred EcCCCcEEEEecCC
Confidence 89999999986543
No 311
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.42 E-value=0.013 Score=50.82 Aligned_cols=143 Identities=11% Similarity=0.160 Sum_probs=69.4
Q ss_pred CCeEEEEECC----CcEEEEeCCCCcceeE--EecCCCCEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCCCcccc
Q 012799 120 GRQLASGSGD----TTVRLWDLNTQTPMFK--CTGHKNWVLCIAWSADGKHLVSGSKAG-----ELQCWDPQTGKPSGNP 188 (456)
Q Consensus 120 ~~~l~~~~~d----~~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~ 188 (456)
+.+++.|+.+ ..+..||..+.+-... +......-..+.+ ++..++.|+.++ .+.+||..+++-....
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 3445555532 3578888876542111 1111111122222 666777777543 5888998776422111
Q ss_pred -ccCcccceEEEEecccccCCCCCEEEEEeCCC-----cEEEEECCCCeEEEEe--cCcCccEEEEEeCCCC-eEEEEeC
Q 012799 189 -LSGHKKWITGISWEPVHLNAPCRRFVSASKDG-----DARIWDVSLRKCVICL--SGHTLAVTCVKWGGDG-VIYTGSQ 259 (456)
Q Consensus 189 -~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~-~l~~~~~ 259 (456)
+.........+.+ ++..++.|+.++ .+.+||+.+.+-...- ........++.+ ++ .++.|+.
T Consensus 94 ~~p~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 164 (302)
T 2xn4_A 94 NMRDRRSTLGAAVL-------NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGY 164 (302)
T ss_dssp CCSSCCBSCEEEEE-------TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCE
T ss_pred CCCccccceEEEEE-------CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCC
Confidence 1111111112222 556777787654 5788888776543321 111111122222 34 4455543
Q ss_pred C-------CcEEEEECCCCeE
Q 012799 260 D-------CTIKVWETTQGKL 273 (456)
Q Consensus 260 d-------g~i~iwd~~~~~~ 273 (456)
+ ..+.+||+.+.+-
T Consensus 165 ~~~~~~~~~~~~~yd~~~~~W 185 (302)
T 2xn4_A 165 DVASRQCLSTVECYNATTNEW 185 (302)
T ss_dssp ETTTTEECCCEEEEETTTTEE
T ss_pred CCCCCccccEEEEEeCCCCcE
Confidence 2 3588899887654
No 312
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.35 E-value=0.049 Score=47.28 Aligned_cols=142 Identities=10% Similarity=0.116 Sum_probs=72.0
Q ss_pred CeEEEEEC--CCcEEEEeCCCCccee--EEecCCCCEEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCCCccc-cccC
Q 012799 121 RQLASGSG--DTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSADGKHLVSGSKA----GELQCWDPQTGKPSGN-PLSG 191 (456)
Q Consensus 121 ~~l~~~~~--d~~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~-~~~~ 191 (456)
.+++.|+. ...+.+||..+++-.. .+......-..+.+ ++..++.|+.+ ..+.+||+.+++-... .+..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 35555654 3578889987754221 11111112222222 66677777755 5688999887653211 0111
Q ss_pred cccceEEEEecccccCCCCCEEEEEeCC------CcEEEEECCCCeEEEEe--cCcCccEEEEEeCCCC-eEEEEeC---
Q 012799 192 HKKWITGISWEPVHLNAPCRRFVSASKD------GDARIWDVSLRKCVICL--SGHTLAVTCVKWGGDG-VIYTGSQ--- 259 (456)
Q Consensus 192 ~~~~v~~~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~-~l~~~~~--- 259 (456)
.......+.+ ++..++.|+.+ ..+.+||..+.+-...- ........++.+ ++ .++.|+.
T Consensus 91 ~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~ 161 (306)
T 3ii7_A 91 PRDSLAACAA-------EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGN 161 (306)
T ss_dssp CCBSCEEEEE-------TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESC
T ss_pred cccceeEEEE-------CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCC
Confidence 1111112222 55677777765 46899998877543321 111111122222 44 4444443
Q ss_pred ------CCcEEEEECCCCeE
Q 012799 260 ------DCTIKVWETTQGKL 273 (456)
Q Consensus 260 ------dg~i~iwd~~~~~~ 273 (456)
-..+.+||+.+.+-
T Consensus 162 ~~~~~~~~~~~~yd~~~~~W 181 (306)
T 3ii7_A 162 NVSGRVLNSCEVYDPATETW 181 (306)
T ss_dssp TTTCEECCCEEEEETTTTEE
T ss_pred CCcccccceEEEeCCCCCeE
Confidence 34588899887653
No 313
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.003 Score=55.25 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=71.9
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEE-eCCCcEEEEECCCCeEEEEecC---
Q 012799 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA-SKDGDARIWDVSLRKCVICLSG--- 238 (456)
Q Consensus 163 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~--- 238 (456)
..++.++.||.|.-.|.++|+...........++....- +. ...++..++.. +.||.+..++..++.....+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~-~~-~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQE-PS-RLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCC-SC-TTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecC-Cc-cccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 478889999999999999998765332221122222111 10 01123334343 6899999999988865544321
Q ss_pred -cCccEEE---EEe------CCCCeEEEEeCCCcEEEEECCCCeEEEEeec
Q 012799 239 -HTLAVTC---VKW------GGDGVIYTGSQDCTIKVWETTQGKLIRELKG 279 (456)
Q Consensus 239 -~~~~v~~---~~~------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 279 (456)
...++.. ... +.++.+++|+.+|.+...|+++|+.+..+..
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 1122221 001 1455899999999999999999999998864
No 314
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.19 E-value=0.22 Score=49.52 Aligned_cols=233 Identities=14% Similarity=0.176 Sum_probs=133.7
Q ss_pred cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEE-ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 012799 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 186 (456)
...|.+|.-..+|. |-.|+.+| +..||-.+.+..... ......|.++....++ .|..|+.+| +..||..+.+...
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~ 96 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ 96 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC
Confidence 56799999998886 44566776 666774321111000 1123568888777665 567777665 7889987754322
Q ss_pred ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec----CcCccEEEEEeCCCCeEEEEeCCCc
Q 012799 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS----GHTLAVTCVKWGGDGVIYTGSQDCT 262 (456)
Q Consensus 187 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~l~~~~~dg~ 262 (456)
........|.++.. . ++ .+..++.+ .+..+|..+++...... .....|.++....++.+..++.+|
T Consensus 97 -~~~~~~~~i~~i~~-~-----~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~G- 166 (758)
T 3ott_A 97 -PETDFPTDVRTMAL-Q-----GD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYNG- 166 (758)
T ss_dssp -CSCCCCSCEEEEEE-E-----TT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEETTE-
T ss_pred -cccCCCceEEEEEe-c-----CC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCCC-
Confidence 11112234555542 1 33 56667765 68888987665433211 123568888888888777777654
Q ss_pred EEEEECCCCeEEEEeecC-----CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC
Q 012799 263 IKVWETTQGKLIRELKGH-----GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (456)
Q Consensus 263 i~iwd~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (456)
+..+|..+++........ ...|.++....+ +..|..|+.
T Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~------------------------------------~~~lWigt~ 210 (758)
T 3ott_A 167 LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTT------------------------------------RQCVWIGTE 210 (758)
T ss_dssp EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETT------------------------------------TTEEEEEEE
T ss_pred HhhCccCCCceEEecCCCccccccceeEEEEEECC------------------------------------CCEEEEEEC
Confidence 778888776543211110 112555554432 333555664
Q ss_pred CCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeE
Q 012799 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF 394 (456)
Q Consensus 338 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~ 394 (456)
+-+..+|..... ...........|.++....+|.+.+ |+.+ -+.+++..+++.
T Consensus 211 -~Gl~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~ 263 (758)
T 3ott_A 211 -GYLFQYFPSTGQ-IKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPL 263 (758)
T ss_dssp -EEEEEEETTTTE-EEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCC
T ss_pred -CCCeEEcCCCCe-EEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcE
Confidence 457888854432 1111111234588888888887654 4444 588888776543
No 315
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.19 E-value=0.11 Score=46.09 Aligned_cols=108 Identities=14% Similarity=0.207 Sum_probs=57.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC--ccc---cccCcccceEEEEecccccCCCCCEEEEE-eC------
Q 012799 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP--SGN---PLSGHKKWITGISWEPVHLNAPCRRFVSA-SK------ 218 (456)
Q Consensus 151 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~---~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-~~------ 218 (456)
.....|+|.|+|+.|+++...|.|++++...... +.. ...........++++|.- .. +..|..+ +.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf-~~-~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDF-AQ-SRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTH-HH-HCEEEEEEEEECSSSC
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCC-CC-CCEEEEEEeCCCCCCC
Confidence 4578999999998455556789999998542211 110 111223456889998820 00 3344433 22
Q ss_pred -CCcEEEEECCCC-------eEEE-EecC---cCccEEEEEeCCCCeEEEEeCC
Q 012799 219 -DGDARIWDVSLR-------KCVI-CLSG---HTLAVTCVKWGGDGVIYTGSQD 260 (456)
Q Consensus 219 -dg~i~iwd~~~~-------~~~~-~~~~---~~~~v~~~~~~~~~~l~~~~~d 260 (456)
...|..|+.... +.+. .+.. .......++|.|+|.|+.+..|
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd 149 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE 149 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence 235666665432 1111 1111 1122357999999966555433
No 316
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.15 E-value=0.011 Score=47.57 Aligned_cols=142 Identities=8% Similarity=-0.022 Sum_probs=79.5
Q ss_pred ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCC--------EEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 012799 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW--------VLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 180 (456)
..+..++|+|+|.+.+. .+|.++-.+..+..... +.+.... -.++.|.|+|.+.++ .||.|.-++..
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~-W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDN-WMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCC-HHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCccc-ccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 46779999999997776 66776666654422111 0011112 478999999988777 56998878764
Q ss_pred CCCCccccccC------cccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCe-------EEEEecCcCccEEEEE
Q 012799 181 TGKPSGNPLSG------HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-------CVICLSGHTLAVTCVK 247 (456)
Q Consensus 181 ~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~ 247 (456)
+.........+ -=..+..+.+.| +|.+.++. |+.++-....+.. ........-...+-+.
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-----~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~ 188 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHP-----NGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLF 188 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECT-----TSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEE
T ss_pred cCCCCceeccccEeccCCCCceEEEEECC-----CceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEE
Confidence 33221111111 114678888888 77776666 7775433322111 0011112223344566
Q ss_pred eCCCCeEEEEeCCCcE
Q 012799 248 WGGDGVIYTGSQDCTI 263 (456)
Q Consensus 248 ~~~~~~l~~~~~dg~i 263 (456)
|.+++.|.... +|.+
T Consensus 189 f~~~G~l~~v~-~g~~ 203 (236)
T 1tl2_A 189 FSSVGTLFGVQ-GGKF 203 (236)
T ss_dssp ECTTSCEEEEE-TTEE
T ss_pred ECCCCcEEEEe-CCeE
Confidence 77777555555 5633
No 317
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.10 E-value=0.035 Score=48.08 Aligned_cols=104 Identities=15% Similarity=0.248 Sum_probs=52.3
Q ss_pred CCCEEEEEe-CC-----CeEEEEeCCCCCCcccc-ccCcccceEEEEecccccCCCCCEEEEEeCC-----CcEEEEECC
Q 012799 161 DGKHLVSGS-KA-----GELQCWDPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSASKD-----GDARIWDVS 228 (456)
Q Consensus 161 ~~~~l~s~~-~d-----g~i~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~ 228 (456)
++..++.|+ .+ ..+.+||+.+++-.... +.........+.. ++..++.|+.+ ..+.+||..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-------~~~l~v~GG~~~~~~~~~~~~~d~~ 86 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL-------HDRIYVIGGYDGRSRLSSVECLDYT 86 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-------TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE-------CCEEEEEcCCCCCccCceEEEEECC
Confidence 445556665 22 35888888776522111 1111111112221 55677777765 468999987
Q ss_pred CCe-----EEEEecCcCccEEEEEeCCCC-eEEEEeCC-----CcEEEEECCCCeE
Q 012799 229 LRK-----CVICLSGHTLAVTCVKWGGDG-VIYTGSQD-----CTIKVWETTQGKL 273 (456)
Q Consensus 229 ~~~-----~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d-----g~i~iwd~~~~~~ 273 (456)
+.+ .+..+.........+.+ ++ .++.|+.+ ..+.+||+.+.+-
T Consensus 87 ~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W 140 (301)
T 2vpj_A 87 ADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW 140 (301)
T ss_dssp CCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence 754 22222211122222223 34 55555543 3588889887653
No 318
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.03 E-value=0.084 Score=45.98 Aligned_cols=141 Identities=11% Similarity=0.020 Sum_probs=69.9
Q ss_pred EEEEECCCcEEEEeCCCCccee-EEecCCCCEEEEEEcCCCCEEEEEeC----C-------CeEEEEeCCCCCCccc-cc
Q 012799 123 LASGSGDTTVRLWDLNTQTPMF-KCTGHKNWVLCIAWSADGKHLVSGSK----A-------GELQCWDPQTGKPSGN-PL 189 (456)
Q Consensus 123 l~~~~~d~~v~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~----d-------g~i~vwd~~~~~~~~~-~~ 189 (456)
++.|+ ..+.+||..+++-.. .+..............+++.++.|+. + ..+..||..+++-... .+
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 85 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL 85 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence 44454 468999988765322 11111122233333457788888874 1 1277888877653211 11
Q ss_pred cCcccceEEEEecccccCCCCCEEEEEeCC--------CcEEEEECCCCeEEEE--ecCcCccEEEEEeCCCCeEEEEeC
Q 012799 190 SGHKKWITGISWEPVHLNAPCRRFVSASKD--------GDARIWDVSLRKCVIC--LSGHTLAVTCVKWGGDGVIYTGSQ 259 (456)
Q Consensus 190 ~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~ 259 (456)
......-..+.+ ++..++.|+.+ ..+.+||..+.+-... +........++ ...+..++.|+.
T Consensus 86 p~~r~~~~~~~~-------~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~ 157 (315)
T 4asc_A 86 PSPRCLFGLGEA-------LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL-SHMDLVYVIGGK 157 (315)
T ss_dssp SSCEESCEEEEE-------TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCB
T ss_pred CcchhceeEEEE-------CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEE-EECCEEEEEeCC
Confidence 111111111221 45677777742 4589999987653221 11111111222 222225555655
Q ss_pred -C-----CcEEEEECCCCeE
Q 012799 260 -D-----CTIKVWETTQGKL 273 (456)
Q Consensus 260 -d-----g~i~iwd~~~~~~ 273 (456)
+ ..+.+||..+.+-
T Consensus 158 ~~~~~~~~~~~~yd~~~~~W 177 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKFEW 177 (315)
T ss_dssp CTTSCBCCCEEEEETTTTEE
T ss_pred CCCCcccceEEEEeCCCCeE
Confidence 2 4688899887653
No 319
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.03 E-value=0.058 Score=46.88 Aligned_cols=144 Identities=10% Similarity=0.108 Sum_probs=71.7
Q ss_pred CCCeEEEEECC----CcEEEEeCCCCcceeE--EecCCCCEEEEEEcCCCCEEEEEeC----C-----CeEEEEeCCCCC
Q 012799 119 DGRQLASGSGD----TTVRLWDLNTQTPMFK--CTGHKNWVLCIAWSADGKHLVSGSK----A-----GELQCWDPQTGK 183 (456)
Q Consensus 119 ~~~~l~~~~~d----~~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~----d-----g~i~vwd~~~~~ 183 (456)
++.+++.|+.+ ..+.+||..+.+-... +......-..+.+ ++.+++.|+. + ..+.+||+.+++
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 45666666632 3688888876542211 1111111122222 6667777765 2 358889987764
Q ss_pred Cccc-cccCcccceEEEEecccccCCCCCEEEEEeCC-----CcEEEEECCCCeEEEE--ecCcCccEEEEEeCCCC-eE
Q 012799 184 PSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKD-----GDARIWDVSLRKCVIC--LSGHTLAVTCVKWGGDG-VI 254 (456)
Q Consensus 184 ~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~-~l 254 (456)
-... .+.........+.+ ++..++.|+.+ ..+.+||..+.+-... +........++.+ ++ .+
T Consensus 102 W~~~~~~p~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iy 172 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI-------DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLY 172 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE-------TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEE
T ss_pred EeECCCCCcCccccEEEEE-------CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEE
Confidence 2211 11111111112222 55677777643 3688899887653322 1111111222223 34 55
Q ss_pred EEEeCC-----CcEEEEECCCCeE
Q 012799 255 YTGSQD-----CTIKVWETTQGKL 273 (456)
Q Consensus 255 ~~~~~d-----g~i~iwd~~~~~~ 273 (456)
+.|+.+ ..+.+||+.+.+-
T Consensus 173 v~GG~~~~~~~~~~~~yd~~~~~W 196 (308)
T 1zgk_A 173 AVGGFDGTNRLNSAECYYPERNEW 196 (308)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEE
T ss_pred EEeCCCCCCcCceEEEEeCCCCeE
Confidence 556544 4588899887653
No 320
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.99 E-value=0.085 Score=54.69 Aligned_cols=231 Identities=11% Similarity=0.107 Sum_probs=131.3
Q ss_pred CCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCC
Q 012799 129 DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNA 208 (456)
Q Consensus 129 d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 208 (456)
...|.|.|+.++..+.+ ..-..-+.-.+|..+.||.-. ..++.|+|+++...+.... ....|.-=.|-.
T Consensus 47 ~~~vvIidl~~~~~~~r---rpi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~--~~e~VvfWkWis----- 115 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIR---RPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWIS----- 115 (1630)
T ss_pred CceEEEEECCCCCCccc---ccccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccc--cCCCceEEEecC-----
Confidence 34788889887654422 112223455678777777654 6789999999877654222 223454445543
Q ss_pred CCCEEEEEeCCCcEEEEECCC-CeEEEEecCc----CccEEEEEeCCCC--eEEEEe------CCCcEEEEECCCCeEEE
Q 012799 209 PCRRFVSASKDGDARIWDVSL-RKCVICLSGH----TLAVTCVKWGGDG--VIYTGS------QDCTIKVWETTQGKLIR 275 (456)
Q Consensus 209 ~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~----~~~v~~~~~~~~~--~l~~~~------~dg~i~iwd~~~~~~~~ 275 (456)
.+.++..+. ..|+-|++.. ..+...+..| ...|..-..+++. .+++|- ..|.+.+|..+.+ ..+
T Consensus 116 -~~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ 192 (1630)
T 1xi4_A 116 -LNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQ 192 (1630)
T ss_pred -CCeeEEEcC-CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cch
Confidence 245555544 5799999964 2343333333 3556677777777 333332 3478888887653 344
Q ss_pred EeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeC---CCcEEEEecCCC---
Q 012799 276 ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD---DFTMFLWEPAVS--- 349 (456)
Q Consensus 276 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~--- 349 (456)
.+.+|......+...... .+...++.+.. .+.+.|-++...
T Consensus 193 ~iegha~~F~~~~~~~~~---------------------------------~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~ 239 (1630)
T 1xi4_A 193 PIEGHAASFAQFKMEGNA---------------------------------EESTLFCFAVRGQAGGKLHIIEVGTPPTG 239 (1630)
T ss_pred hhhHhHhhhheeccCCCC---------------------------------CCceEEEEEEecCCCceEEEEecCCCccC
Confidence 555665544443332210 00112222221 267888886443
Q ss_pred CCCc-----ccccc---ccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEecccccEE
Q 012799 350 KQPK-----TRMTG---HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY 406 (456)
Q Consensus 350 ~~~~-----~~~~~---~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 406 (456)
.... ..... -.+-..++..|+.-..+..-+.-|.+.+||+.+|.++..-+-...+|.
T Consensus 240 ~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF 304 (1630)
T 1xi4_A 240 NQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 304 (1630)
T ss_pred CCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceE
Confidence 1111 01111 123345677788777888888999999999999998765543344443
No 321
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.97 E-value=0.1 Score=46.71 Aligned_cols=145 Identities=16% Similarity=0.054 Sum_probs=92.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEecCc----CccEEEEEeCCCCeEEEEeCCCcEEEEECCCCe------------
Q 012799 209 PCRRFVSASKDGDARIWDVSLRKCVICLSGH----TLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGK------------ 272 (456)
Q Consensus 209 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------------ 272 (456)
++..++.+-. +.||.-++......+.++.. -..|..+..+|+|.+++-..+..|.+..+..+.
T Consensus 31 n~t~i~~a~~-n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~ 109 (452)
T 3pbp_A 31 NGTRIVFIQD-NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAF 109 (452)
T ss_dssp TTTEEEEEET-TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred CCCEEEEEEC-CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccccc
Confidence 4444444433 56776666643333333222 235788999999966666777889999887331
Q ss_pred EEEEeec------CCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEec
Q 012799 273 LIRELKG------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP 346 (456)
Q Consensus 273 ~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 346 (456)
..+.+.. ...+|..+.|+|-+.. +..|++-..|+.|++||+
T Consensus 110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~---------------------------------ds~LVVLtsD~~Ir~yDl 156 (452)
T 3pbp_A 110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYR---------------------------------DSCIVVLKEDDTITMFDI 156 (452)
T ss_dssp EEEEEEGGGCC--CCCCEEEEEECTTBGG---------------------------------GCEEEEEETTSCEEEEET
T ss_pred ceeEEEcCCcccCCCCceeEEEeccccCC---------------------------------CCeEEEEecCCEEEEEEc
Confidence 1222322 2466888999987432 556999999999999998
Q ss_pred CCCC-CCcccc---------ccccccEeEEEECCCCCEEEEEE--CCCcEEEEe
Q 012799 347 AVSK-QPKTRM---------TGHQQLVNHVYFSPDGQWVASAS--FDKSIKLWN 388 (456)
Q Consensus 347 ~~~~-~~~~~~---------~~~~~~v~~~~~sp~~~~l~s~~--~dg~i~iwd 388 (456)
.... .+. .+ ......|.+++|.+++-.|...+ ..|.|+-.-
T Consensus 157 ~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 157 LNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp TCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred ccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 7632 222 11 12235688999999877677755 778776553
No 322
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.95 E-value=0.056 Score=46.75 Aligned_cols=63 Identities=8% Similarity=0.119 Sum_probs=34.8
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEEEe--cCcCccEEEEEeCCCC-eEEEEeCCC-----cEEEEECCCCeE
Q 012799 209 PCRRFVSASKD-----GDARIWDVSLRKCVICL--SGHTLAVTCVKWGGDG-VIYTGSQDC-----TIKVWETTQGKL 273 (456)
Q Consensus 209 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~-~l~~~~~dg-----~i~iwd~~~~~~ 273 (456)
++..++.|+.+ ..+.+||..+.+-...- .........+.+ ++ .++.|+.++ .+.+||+.+.+-
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W 136 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEW 136 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeE
Confidence 55677777754 35889998876533322 111111222222 34 555666543 477888877653
No 323
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.94 E-value=0.063 Score=46.55 Aligned_cols=102 Identities=6% Similarity=0.070 Sum_probs=53.5
Q ss_pred CEEEEEeCC--CeEEEEeCCCCCCccc-cccCcccceEEEEecccccCCCCCEEEEEeCC----CcEEEEECCCCeEEEE
Q 012799 163 KHLVSGSKA--GELQCWDPQTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKD----GDARIWDVSLRKCVIC 235 (456)
Q Consensus 163 ~~l~s~~~d--g~i~vwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~ 235 (456)
.+++.|+.+ ..+.+||..+++-... .+......-..+.+ ++..++.|+.+ ..+.+||..+.+-...
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-------~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~ 85 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW-------DNVVYILGGSQLFPIKRMDCYNVVKDSWYSK 85 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE-------TTEEEEECCBSSSBCCEEEEEETTTTEEEEE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE-------CCEEEEEeCCCCCCcceEEEEeCCCCeEEEC
Confidence 345556543 5688899887653211 11111111122222 55677788755 6788999887654322
Q ss_pred --ecCcCccEEEEEeCCCC-eEEEEeCC------CcEEEEECCCCeE
Q 012799 236 --LSGHTLAVTCVKWGGDG-VIYTGSQD------CTIKVWETTQGKL 273 (456)
Q Consensus 236 --~~~~~~~v~~~~~~~~~-~l~~~~~d------g~i~iwd~~~~~~ 273 (456)
+.........+.+ ++ .++.|+.+ ..+.+||..+.+-
T Consensus 86 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W 130 (306)
T 3ii7_A 86 LGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESW 130 (306)
T ss_dssp ECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred CCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence 2211112222222 34 55666654 4588999887654
No 324
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.024 Score=49.55 Aligned_cols=149 Identities=8% Similarity=-0.022 Sum_probs=83.9
Q ss_pred CeEEEEECCCcEEEEeCCCCcceeEEecC-CCCEEEEEEc--CCCCEEEEE--eCCCeEEEEeCCCCCCccccccC---c
Q 012799 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGH-KNWVLCIAWS--ADGKHLVSG--SKAGELQCWDPQTGKPSGNPLSG---H 192 (456)
Q Consensus 121 ~~l~~~~~d~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~---~ 192 (456)
.+++.++.||.|.-.|..+|+.+.++... ..++....-. +.+..++.+ +.||.+..++..+|......... .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46888999999999999999998887654 1222221100 112234433 57999999998877432211000 0
Q ss_pred ccceEEEEeccccc----CCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcC--c-----cEEEEEe------CCCCeEE
Q 012799 193 KKWITGISWEPVHL----NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT--L-----AVTCVKW------GGDGVIY 255 (456)
Q Consensus 193 ~~~v~~~~~~~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~-----~v~~~~~------~~~~~l~ 255 (456)
..++.. .-.|.-. ...+..+++|+.+|.+...|+.+|+.+..+.... . ...|... ..++.++
T Consensus 91 ~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 91 TSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred cccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 111111 1111100 0034688999999999999999999999886332 1 0111111 1123667
Q ss_pred EEeCCCcEEEEECCCC
Q 012799 256 TGSQDCTIKVWETTQG 271 (456)
Q Consensus 256 ~~~~dg~i~iwd~~~~ 271 (456)
.+..+..+.+.+ ++|
T Consensus 170 ig~~~y~v~~~~-~sG 184 (339)
T 2be1_A 170 IGKTIFELGIHS-YDG 184 (339)
T ss_dssp EEEEEEECEECC-TTS
T ss_pred EecceEEEEEEC-CCC
Confidence 777776666666 344
No 325
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.93 E-value=0.026 Score=45.41 Aligned_cols=106 Identities=10% Similarity=0.040 Sum_probs=61.8
Q ss_pred cEEEEEeCCCCeEEEEeCCCcEEEEECCCCeE------EEEeec-CCcceEEEEecCcceeeeccccCCCCccCChHHHH
Q 012799 242 AVTCVKWGGDGVIYTGSQDCTIKVWETTQGKL------IRELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK 314 (456)
Q Consensus 242 ~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (456)
.+.+++|+|+|.|.+. .+|.++-.+..+... -..+-. .-.....+.+.++
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~---------------------- 98 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPN---------------------- 98 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTT----------------------
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCC----------------------
Confidence 5679999999977777 788877777654211 111100 0011356666665
Q ss_pred HHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCcccc------ccccccEeEEEECCCCCEEEEEECCCcEEEEe
Q 012799 315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM------TGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388 (456)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd 388 (456)
+.+.++ .||.|+-++..+.....-.. ..--..+..|.|.|+|.+.+.. ||.++-..
T Consensus 99 --------------G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~ 160 (236)
T 1tl2_A 99 --------------GYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKAL 160 (236)
T ss_dssp --------------SCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEEC
T ss_pred --------------CCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecC
Confidence 333444 66999888854332211111 1111468999999999876666 88754433
No 326
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.91 E-value=0.069 Score=47.45 Aligned_cols=143 Identities=8% Similarity=0.094 Sum_probs=76.5
Q ss_pred cEEEEEECCCCCeEEEEECCCcEEEEeCCCCc--ceeEE----ecCCCCEEEEEEcCC---CCEEEEEe-C-------CC
Q 012799 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKC----TGHKNWVLCIAWSAD---GKHLVSGS-K-------AG 172 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~----~~~~~~v~~~~~~~~---~~~l~s~~-~-------dg 172 (456)
....|+|.|+|+.|+.+...|.|++++..... .+..+ .........|+++|+ +..|..+. . ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 45789999999934445578999999854221 11111 122456789999996 45554442 2 23
Q ss_pred eEEEEeCCCCCC-------cccccc---CcccceEEEEecccccCCCCCEEEEEeCC-------------CcEEEEECCC
Q 012799 173 ELQCWDPQTGKP-------SGNPLS---GHKKWITGISWEPVHLNAPCRRFVSASKD-------------GDARIWDVSL 229 (456)
Q Consensus 173 ~i~vwd~~~~~~-------~~~~~~---~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-------------g~i~iwd~~~ 229 (456)
.|..|++..+.. +...+. ........+.|.| +|.++++.+.. |.|.-++...
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-----dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG 173 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-----KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG 173 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-----SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-----CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence 566666653310 000011 1111235688888 88655554332 4566666542
Q ss_pred C--------------eEEEEecCcCccEEEEEeCC-CCeEEEEeC
Q 012799 230 R--------------KCVICLSGHTLAVTCVKWGG-DGVIYTGSQ 259 (456)
Q Consensus 230 ~--------------~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~ 259 (456)
. ..+.. .++ .....++|++ ++.|+++..
T Consensus 174 ~~p~~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~ 216 (353)
T 2g8s_A 174 EIPDDNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEH 216 (353)
T ss_dssp CCCTTCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEE
T ss_pred CCCCCCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEec
Confidence 2 01111 122 2357788998 666666544
No 327
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.91 E-value=0.51 Score=49.01 Aligned_cols=114 Identities=10% Similarity=0.032 Sum_probs=69.0
Q ss_pred ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeE-EecCCCCEEEEEEcCC------CCEEEEEeC-CCeEEEEeCC
Q 012799 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK-CTGHKNWVLCIAWSAD------GKHLVSGSK-AGELQCWDPQ 180 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~------~~~l~s~~~-dg~i~vwd~~ 180 (456)
..|...+.+. .+++.++ ++.+.++.++.++.... -..-...|.|+++.|. +++++.|.. |++++|+++.
T Consensus 514 ~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~ 590 (1158)
T 3ei3_A 514 KNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP 590 (1158)
T ss_dssp CCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred CEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence 3566666543 3566655 56788888765432111 1124568999999863 468999997 9999999998
Q ss_pred CCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC
Q 012799 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228 (456)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 228 (456)
+.+.+.....+......++.+.... ...++..|-.||.+.-+.+.
T Consensus 591 ~l~~~~~~~L~~~~~p~si~l~~~~---~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 591 SFELLHKEMLGGEIIPRSILMTTFE---SSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp TCCEEEEEECCSSCCEEEEEEEEET---TEEEEEEEETTSEEEEEEEC
T ss_pred CCCeEEEEECCCCCCCcEEEEEEeC---CCcEEEEEeCCCeEEEEEEc
Confidence 6554321111111233444443221 33578889999988666543
No 328
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.80 E-value=0.054 Score=47.07 Aligned_cols=104 Identities=13% Similarity=0.169 Sum_probs=50.3
Q ss_pred CCCEEEEEeCC----CeEEEEeCCCCCCcccc-ccCcccceEEEEecccccCCCCCEEEEEeC----C-----CcEEEEE
Q 012799 161 DGKHLVSGSKA----GELQCWDPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSASK----D-----GDARIWD 226 (456)
Q Consensus 161 ~~~~l~s~~~d----g~i~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~----d-----g~i~iwd 226 (456)
++..++.|+.+ ..+.+||..+++-.... +......-..+.. ++..++.|+. + ..+.+||
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-------~~~lyv~GG~~~~~~~~~~~~~~~~~d 96 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-------GGLLYAVGGRNNSPDGNTDSSALDCYN 96 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-------TTEEEEECCEEEETTEEEECCCEEEEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE-------CCEEEEECCCcCCCCCCeecceEEEEC
Confidence 45556666532 35788887765422110 1101111111111 4567777765 2 4688899
Q ss_pred CCCCeEEEE--ecCcCccEEEEEeCCCC-eEEEEeCC-----CcEEEEECCCCeE
Q 012799 227 VSLRKCVIC--LSGHTLAVTCVKWGGDG-VIYTGSQD-----CTIKVWETTQGKL 273 (456)
Q Consensus 227 ~~~~~~~~~--~~~~~~~v~~~~~~~~~-~l~~~~~d-----g~i~iwd~~~~~~ 273 (456)
..+.+-... +.........+.+ ++ .++.|+.+ ..+.+||..+.+-
T Consensus 97 ~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 149 (308)
T 1zgk_A 97 PMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEW 149 (308)
T ss_dssp TTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEE
T ss_pred CCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeE
Confidence 887653322 1111112222222 34 55555433 3578888887653
No 329
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.75 E-value=0.12 Score=44.95 Aligned_cols=100 Identities=12% Similarity=0.052 Sum_probs=48.9
Q ss_pred EEEEEeCCCeEEEEeCCCCCCccccccCc-ccceEEEEecccccCCCCCEEEEEeC----C-------CcEEEEECCCCe
Q 012799 164 HLVSGSKAGELQCWDPQTGKPSGNPLSGH-KKWITGISWEPVHLNAPCRRFVSASK----D-------GDARIWDVSLRK 231 (456)
Q Consensus 164 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~l~~~~~----d-------g~i~iwd~~~~~ 231 (456)
+++.|+ ..+..||..+++-........ ...-.++.. . ++..++.|+. + ..+..||..+.+
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~-----~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~ 78 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVT-K-----ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE 78 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEEC-T-----TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEE-E-----CCEEEEEcCcccCCCCCccccccceEEecCCCCe
Confidence 344555 578899988776322111111 111112221 1 6678888873 1 127788888765
Q ss_pred EEEE--ecCcCccEEEEEeCCCC-eEEEEeCC--------CcEEEEECCCCeE
Q 012799 232 CVIC--LSGHTLAVTCVKWGGDG-VIYTGSQD--------CTIKVWETTQGKL 273 (456)
Q Consensus 232 ~~~~--~~~~~~~v~~~~~~~~~-~l~~~~~d--------g~i~iwd~~~~~~ 273 (456)
-... +.........+.+ ++ .++.|+.+ ..+.+||..+.+-
T Consensus 79 W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W 129 (315)
T 4asc_A 79 WLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKW 129 (315)
T ss_dssp EEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEE
T ss_pred EEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcE
Confidence 3221 1111111112222 34 55555532 3588899887653
No 330
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.66 E-value=0.61 Score=46.30 Aligned_cols=233 Identities=12% Similarity=0.125 Sum_probs=131.1
Q ss_pred cccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe--c----CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 012799 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT--G----HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~--~----~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 181 (456)
...|.++....+|.+.+ |+.+| +..++..+++.. .+. . ....|.++...+++..|..|+. +-+..+|..+
T Consensus 145 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~ 220 (758)
T 3ott_A 145 NNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPST 220 (758)
T ss_dssp CSCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTT
T ss_pred CCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCC
Confidence 35688998888887555 45544 778887665432 221 1 1234888888777776666664 4578888776
Q ss_pred CCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEec-------CcCccEEEEEeCCCCeE
Q 012799 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-------GHTLAVTCVKWGGDGVI 254 (456)
Q Consensus 182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~l 254 (456)
++... ........|.++.... ++. +..|+. +-+.+++..+.+...... -....|.++..+.+|.|
T Consensus 221 ~~~~~-~~~l~~~~i~~i~~d~-----~g~-lWigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l 292 (758)
T 3ott_A 221 GQIKQ-TEAFHNNSIKSLALDG-----NGD-LLAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNI 292 (758)
T ss_dssp TEEEE-EEEEEEEEEEEEEECT-----TCC-EEEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCE
T ss_pred CeEEe-ccCCCCCeEEEEEEcC-----CCC-EEEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCE
Confidence 54321 1111123466665543 444 455564 458888887665432221 12345899999988888
Q ss_pred EEEeCCCcEEEEECCCCeEEEEee-------cCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCC
Q 012799 255 YTGSQDCTIKVWETTQGKLIRELK-------GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327 (456)
Q Consensus 255 ~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (456)
..|+..| +.++.... ....+. .....|.++....+
T Consensus 293 WiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~----------------------------------- 334 (758)
T 3ott_A 293 WLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSK----------------------------------- 334 (758)
T ss_dssp EEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTT-----------------------------------
T ss_pred EEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCC-----------------------------------
Confidence 8888777 55543321 111111 01234555554433
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCC-Cccccc-------cccccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEE
Q 012799 328 APERLVSGSDDFTMFLWEPAVSKQ-PKTRMT-------GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395 (456)
Q Consensus 328 ~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~-------~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~ 395 (456)
..+..|+.+| +..++...... ....+. -....|.++.-..+|++-+ |+ ++-+..||..+++..
T Consensus 335 --g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~ 405 (758)
T 3ott_A 335 --GFYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFI 405 (758)
T ss_dssp --CCEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEE
T ss_pred --CCEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEE
Confidence 2356666554 66666443211 110010 1124588998888887544 44 456999998887653
No 331
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.49 E-value=0.41 Score=42.25 Aligned_cols=151 Identities=14% Similarity=0.173 Sum_probs=76.2
Q ss_pred CCCcEEEEECCCC--eE-EEEecC-----cCccEEEEEeCC--CC--eEEEEeC---CCcEEEEECCCC--e--EEEEee
Q 012799 218 KDGDARIWDVSLR--KC-VICLSG-----HTLAVTCVKWGG--DG--VIYTGSQ---DCTIKVWETTQG--K--LIRELK 278 (456)
Q Consensus 218 ~dg~i~iwd~~~~--~~-~~~~~~-----~~~~v~~~~~~~--~~--~l~~~~~---dg~i~iwd~~~~--~--~~~~~~ 278 (456)
.+|.|.++|..+. +. ...+.+ ..-....+.+.+ ++ +|+++.. +.+|.+|++..+ . .+..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 6899999998732 21 112222 123556666644 34 4555533 356777665542 2 223333
Q ss_pred cC-CcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccc
Q 012799 279 GH-GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT 357 (456)
Q Consensus 279 ~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 357 (456)
+. -...+.+.+.+++.+..+.... +..+.... .... . +...|.++.+|.. . .....
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~----ftd~~~~~---~e~~---~---------~~~~g~vyr~d~~---~-~~~~~ 217 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHY----FIDPYLKS---WEMH---L---------GLAWSFVTYYSPN---D-VRVVA 217 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCS----CSSHHHHH---HHHH---T---------TCCCEEEEEECTT---C-CEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcE----eCCccccc---chhh---c---------cCCccEEEEEECC---e-EEEee
Confidence 21 2346777777776543322111 01110000 0000 0 1123456666642 2 22222
Q ss_pred cccccEeEEEECCCCCEEEEEE-CCCcEEEEeCCC
Q 012799 358 GHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTT 391 (456)
Q Consensus 358 ~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~ 391 (456)
..-...+.++||||++.|+.+. ..+.|..|++..
T Consensus 218 ~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 218 EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 3334578999999998876654 567899999863
No 332
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.26 E-value=0.49 Score=40.75 Aligned_cols=147 Identities=12% Similarity=0.215 Sum_probs=91.9
Q ss_pred EEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcc
Q 012799 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK 193 (456)
Q Consensus 114 ~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 193 (456)
.-.+|..+.+|.-. ..++.++|+++.+.+..+.- ...|.-=.|-.+ +.|+..+. ..|.-|++.......+.+..|.
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~-~~L~lVT~-taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALVTD-NAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSS-SEEEEEES-SEEEEEESSTTCCCEEEEECCG
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCC-CeEEEEcC-CcEEEEcccCCCCCceeeecch
Confidence 34588888888765 57899999999988888774 456777777644 45555543 4799999976433322333332
Q ss_pred ----cceEEEEecccccCCCCCEEEEEeC-------CCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC---eEEE-Ee
Q 012799 194 ----KWITGISWEPVHLNAPCRRFVSASK-------DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG---VIYT-GS 258 (456)
Q Consensus 194 ----~~v~~~~~~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~~-~~ 258 (456)
..|..-..++ +.+.++..|- .|.+.+|..+.+. .+.+.+|......+....+. .+++ +.
T Consensus 148 ~L~~~QIInY~~d~-----~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~ 221 (365)
T 2xzh_A 148 SLAGCQIINYRTDA-----KQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAV 221 (365)
T ss_dssp GGTTCEEEEEEECT-----TSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEE
T ss_pred hcccceEEEEEECC-----CCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeeeeeeEEEecCCCCCCceEEEEEE
Confidence 2344444444 6666655432 4778999987654 45567787666555554322 3333 22
Q ss_pred C---CCcEEEEECCC
Q 012799 259 Q---DCTIKVWETTQ 270 (456)
Q Consensus 259 ~---dg~i~iwd~~~ 270 (456)
. .+.+++.++..
T Consensus 222 r~~~g~kLhIiEi~~ 236 (365)
T 2xzh_A 222 RGQAGGKLHIIEVGT 236 (365)
T ss_dssp EETTEEEEEEEECSS
T ss_pred ecCCCcEEEEEEcCC
Confidence 2 25788888743
No 333
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.10 E-value=0.24 Score=43.15 Aligned_cols=65 Identities=11% Similarity=0.033 Sum_probs=33.0
Q ss_pred CCCEEEEEeC----CC-------cEEEEECCCCeEEEE--ecCcCccEEEEEeCCCCeEEEEeCC-------CcEEEEEC
Q 012799 209 PCRRFVSASK----DG-------DARIWDVSLRKCVIC--LSGHTLAVTCVKWGGDGVIYTGSQD-------CTIKVWET 268 (456)
Q Consensus 209 ~~~~l~~~~~----dg-------~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~d-------g~i~iwd~ 268 (456)
++..++.|+. ++ .+..||..+.+-... +.........+.+ .+..++.|+.+ ..+.+||.
T Consensus 56 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~ 134 (318)
T 2woz_A 56 QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDP 134 (318)
T ss_dssp SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEET
T ss_pred CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeC
Confidence 5677788873 12 177888877654322 1111111122222 22255556543 24788888
Q ss_pred CCCeEE
Q 012799 269 TQGKLI 274 (456)
Q Consensus 269 ~~~~~~ 274 (456)
.+.+-.
T Consensus 135 ~~~~W~ 140 (318)
T 2woz_A 135 VAAKWS 140 (318)
T ss_dssp TTTEEE
T ss_pred CCCCEe
Confidence 876543
No 334
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.01 E-value=0.68 Score=40.18 Aligned_cols=134 Identities=13% Similarity=0.074 Sum_probs=65.2
Q ss_pred cEEEEeCCCCccee-EEecCCCCEEEEEEcCCCCEEEEEeC----CC-------eEEEEeCCCCCCccc-cccCcccceE
Q 012799 131 TVRLWDLNTQTPMF-KCTGHKNWVLCIAWSADGKHLVSGSK----AG-------ELQCWDPQTGKPSGN-PLSGHKKWIT 197 (456)
Q Consensus 131 ~v~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~----dg-------~i~vwd~~~~~~~~~-~~~~~~~~v~ 197 (456)
.+..||..+++-.. ................++..++.|+. ++ .+..||..+++-... .+........
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 104 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence 37888887765332 11111112222233457778888873 12 177888876643211 1111111111
Q ss_pred EEEecccccCCCCCEEEEEeCC-------CcEEEEECCCCeEEEEe--cCcCccEEEEEeCCCC-eEEEEeC------CC
Q 012799 198 GISWEPVHLNAPCRRFVSASKD-------GDARIWDVSLRKCVICL--SGHTLAVTCVKWGGDG-VIYTGSQ------DC 261 (456)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~-~l~~~~~------dg 261 (456)
.+.+ ++..++.|+.+ ..+.+||..+.+-...- ........ ++. .++ .++.|+. -.
T Consensus 105 ~~~~-------~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~ 175 (318)
T 2woz_A 105 LGEV-------DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHN-VIS-HNGMIYCLGGKTDDKKCTN 175 (318)
T ss_dssp EEEE-------TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCE-EEE-ETTEEEEECCEESSSCBCC
T ss_pred eEEE-------CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccE-EEE-ECCEEEEEcCCCCCCCccc
Confidence 1222 55677777764 25788898876543321 11111111 222 244 4455543 23
Q ss_pred cEEEEECCCCeE
Q 012799 262 TIKVWETTQGKL 273 (456)
Q Consensus 262 ~i~iwd~~~~~~ 273 (456)
.+.+||+.+.+-
T Consensus 176 ~~~~yd~~~~~W 187 (318)
T 2woz_A 176 RVFIYNPKKGDW 187 (318)
T ss_dssp CEEEEETTTTEE
T ss_pred eEEEEcCCCCEE
Confidence 588999887653
No 335
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.93 E-value=0.36 Score=42.77 Aligned_cols=24 Identities=8% Similarity=0.097 Sum_probs=16.7
Q ss_pred CCCEEEEEeC-C---------CcEEEEECCCCeE
Q 012799 209 PCRRFVSASK-D---------GDARIWDVSLRKC 232 (456)
Q Consensus 209 ~~~~l~~~~~-d---------g~i~iwd~~~~~~ 232 (456)
++..++.|+. + ..+.+||..+.+-
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W 98 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW 98 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence 5567777776 2 4688999887653
No 336
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.92 E-value=0.68 Score=39.41 Aligned_cols=223 Identities=14% Similarity=0.072 Sum_probs=115.3
Q ss_pred cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccc
Q 012799 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL 189 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 189 (456)
.|..++.... +.+.-. ||.|+.|-......+-.-......|..++...+. .++. . ||.|..|-......+...
T Consensus 25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P- 97 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVP- 97 (282)
T ss_dssp SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCC-
T ss_pred CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCC-
Confidence 5666666543 222224 8899999765432222111223457777765433 3333 4 899999976654333211
Q ss_pred cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECC
Q 012799 190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT 269 (456)
Q Consensus 190 ~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~ 269 (456)
..-...|..++... .+.+.-. ||.|+.|-......+-........|..++......++. . ||.|+.|-..
T Consensus 98 ~~~~~~v~~ia~G~-------~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l-~-~G~v~~wG~n 167 (282)
T 3qhy_B 98 AEARSGVDAIAAGA-------WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV-K-NGGVIAWGDN 167 (282)
T ss_dssp GGGSSSEEEEEEET-------TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-E-TTEEEEEECC
T ss_pred cccCCCeEEEECcC-------CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE-E-CCEEEEecCC
Confidence 11234577776543 3455556 99999997654221111111234577777665543333 3 7999999765
Q ss_pred CCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCC
Q 012799 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS 349 (456)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 349 (456)
....+..-......|..++.... ..++. .||.++.|=....
T Consensus 168 ~~gqlg~p~~~~~~v~~i~~G~~-------------------------------------hs~al--~~G~v~~wG~n~~ 208 (282)
T 3qhy_B 168 YFGQTTVPAEAQSGVDDVAGGIF-------------------------------------HSLAL--KDGKVIAWGDNRY 208 (282)
T ss_dssp TTSTTSCCGGGGSSEEEEEECSS-------------------------------------EEEEE--ETTEEEEEECCTT
T ss_pred CCCCCCCceecCCCeEEEEecCC-------------------------------------EEEEE--ECCeEEEEECCCC
Confidence 42111100001223444444332 12333 5999999974433
Q ss_pred CCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCCCC
Q 012799 350 KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG 392 (456)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 392 (456)
.+.-... .....|..++...+.. ++.. ||.|..|-....
T Consensus 209 gqlg~p~-~~~~~v~~i~~G~~h~-~al~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 209 KQTTVPT-EALSGVSAIASGEWYS-LALK--NGKVIAWGSSRT 247 (282)
T ss_dssp STTCCCG-GGGSSCCEEEECSSCE-EEEE--TTEEEEESTTCC
T ss_pred CCCCCCc-ccCCCceEEEcCCCEE-EEEE--CCEEEEecCCCC
Confidence 2221111 1123477777654433 3333 999999976553
No 337
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.82 E-value=1.2 Score=41.52 Aligned_cols=93 Identities=15% Similarity=0.121 Sum_probs=56.3
Q ss_pred EEEEECCCcEEEEeCCCCcceeEEecC-------------------------CCC--EEEEEEcC---CCCEEEEEeC-C
Q 012799 123 LASGSGDTTVRLWDLNTQTPMFKCTGH-------------------------KNW--VLCIAWSA---DGKHLVSGSK-A 171 (456)
Q Consensus 123 l~~~~~d~~v~vwd~~~~~~~~~~~~~-------------------------~~~--v~~~~~~~---~~~~l~s~~~-d 171 (456)
|.+|+..|.|+|+-+.+++.+..+.-. .+. =..+++.. ||++|+.-.. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 667888999999998888776665310 000 11234432 6788888764 4
Q ss_pred CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC
Q 012799 172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK 218 (456)
Q Consensus 172 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~ 218 (456)
..|...+++..+....+.......+.+++|... ++..++++++.
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~---p~T~yv~~~~e 196 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKV---PHTKYVFANAE 196 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCS---SBCCEEEEEEC
T ss_pred cceEEEECCcEeeceeEeCCCCcCccccccccc---CCccEEEecce
Confidence 568888888776544333444556667776521 14456666554
No 338
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.68 E-value=0.86 Score=38.80 Aligned_cols=184 Identities=14% Similarity=0.069 Sum_probs=94.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC
Q 012799 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR 230 (456)
Q Consensus 151 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 230 (456)
..|..++.... +.+.-. ||.|..|-......+... ......|..++... .+.+.-. ||.|+.|-....
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p-~~~~~~i~~ia~G~-------~hs~~l~-~G~v~~wG~n~~ 91 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMP-AATQSGVDAIAAGN-------YHSLALK-DGEVIAWGGNED 91 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCC-GGGGSCCCEEEECS-------SEEEEEE-TTEEEEEECCTT
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCC-ccCCCCEEEEEeCC-------CEEEEEE-CCEEEEeeCCCC
Confidence 35777776433 333335 899999976654433311 11233566666533 2333334 899999976532
Q ss_pred eEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCcceEEEEecCcceeeeccccCCCCccCCh
Q 012799 231 KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP 310 (456)
Q Consensus 231 ~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (456)
..+-.-..-...|..++......++ -. +|.|+.|-......+..-......|..++....
T Consensus 92 Gqlg~P~~~~~~v~~ia~G~~hs~a-l~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~------------------ 151 (282)
T 3qhy_B 92 GQTTVPAEARSGVDAIAAGAWASYA-LK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY------------------ 151 (282)
T ss_dssp STTCCCGGGSSSEEEEEEETTEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS------------------
T ss_pred CCCCCCcccCCCeEEEECcCCEEEE-Ee-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC------------------
Confidence 1111111113467777776654333 34 999999976542111100111223444443322
Q ss_pred HHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCCCccccccccccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799 311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (456)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 390 (456)
..+.-. ||.++.|-.....+.-. ...-...|..++...+. .++. .||.|+.|-..
T Consensus 152 --------------------~~~~l~-~G~v~~wG~n~~gqlg~-p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n 206 (282)
T 3qhy_B 152 --------------------TALAVK-NGGVIAWGDNYFGQTTV-PAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDN 206 (282)
T ss_dssp --------------------EEEEEE-TTEEEEEECCTTSTTSC-CGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECC
T ss_pred --------------------EEEEEE-CCEEEEecCCCCCCCCC-ceecCCCeEEEEecCCE-EEEE--ECCeEEEEECC
Confidence 122223 79999997443322211 11113457777765433 2343 59999999755
Q ss_pred C
Q 012799 391 T 391 (456)
Q Consensus 391 ~ 391 (456)
.
T Consensus 207 ~ 207 (282)
T 3qhy_B 207 R 207 (282)
T ss_dssp T
T ss_pred C
Confidence 4
No 339
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.64 E-value=1.3 Score=40.65 Aligned_cols=105 Identities=10% Similarity=0.107 Sum_probs=60.3
Q ss_pred ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcce--eEEec------CCCCEEEEEEcCC---CCEEEEEeC-------
Q 012799 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM--FKCTG------HKNWVLCIAWSAD---GKHLVSGSK------- 170 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~--~~~~~------~~~~v~~~~~~~~---~~~l~s~~~------- 170 (456)
....+|+|.|+|+++++-...+.|++++..+++.. ..+.. .......|+|+|+ +..|..+..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 35679999999997776543347888876545432 22211 2456789999995 555554432
Q ss_pred ------CCeEEEEeCCCCC-------Cccccc-cCcccceEEEEecccccCCCCCEEEEEeC
Q 012799 171 ------AGELQCWDPQTGK-------PSGNPL-SGHKKWITGISWEPVHLNAPCRRFVSASK 218 (456)
Q Consensus 171 ------dg~i~vwd~~~~~-------~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~~~ 218 (456)
...|.-++...+. .+...+ .........+.|.| +|.++++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-----DG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-----DQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-----TSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-----CCeEEEEECC
Confidence 1345555553321 111001 11123467888888 8887776553
No 340
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.54 E-value=1.3 Score=39.88 Aligned_cols=148 Identities=12% Similarity=0.213 Sum_probs=92.8
Q ss_pred EEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCc
Q 012799 113 SVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGH 192 (456)
Q Consensus 113 ~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 192 (456)
+.-.+|..+.+|.-. ..++.|||+++...+..+.-.+ .|.-=.|-.+ +.|+..+ +..|.-|++.......+.+..|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecc
Confidence 345678888777765 6799999999998888877444 5666666533 4555554 4589999997543332233333
Q ss_pred c----cceEEEEecccccCCCCCEEEEEe-------CCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC---eEEE-E
Q 012799 193 K----KWITGISWEPVHLNAPCRRFVSAS-------KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG---VIYT-G 257 (456)
Q Consensus 193 ~----~~v~~~~~~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~~-~ 257 (456)
. ..|..-..++ +.+.++..| -.|.+.+|..+.+. .+.+.+|......+....+. .+++ +
T Consensus 146 ~~L~~~QIInY~~d~-----~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa 219 (494)
T 1bpo_A 146 SSLAGCQIINYRTDA-----KQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFA 219 (494)
T ss_dssp GGGTTCEEEEEEECT-----TSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEE
T ss_pred hhcccceEEEEEECC-----CCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEE
Confidence 2 3344444444 667766443 24778999987553 45577887777666665432 3333 3
Q ss_pred eC---CCcEEEEECCC
Q 012799 258 SQ---DCTIKVWETTQ 270 (456)
Q Consensus 258 ~~---dg~i~iwd~~~ 270 (456)
.. .+.+++.++..
T Consensus 220 ~r~~~g~kLhi~Ei~~ 235 (494)
T 1bpo_A 220 VRGQAGGKLHIIEVGT 235 (494)
T ss_dssp ECSTTCCEEEEEECSC
T ss_pred EecCCCcEEEEEEcCC
Confidence 33 26788888754
No 341
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.49 E-value=0.54 Score=41.62 Aligned_cols=63 Identities=13% Similarity=0.142 Sum_probs=34.5
Q ss_pred CCCeEEEEEC-CCcEEEEeCCCC-cceeEEec----CCCCEEEEEEcCCCCEEEEEeC-C---------CeEEEEeCCCC
Q 012799 119 DGRQLASGSG-DTTVRLWDLNTQ-TPMFKCTG----HKNWVLCIAWSADGKHLVSGSK-A---------GELQCWDPQTG 182 (456)
Q Consensus 119 ~~~~l~~~~~-d~~v~vwd~~~~-~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~-d---------g~i~vwd~~~~ 182 (456)
++++++.|+. ...+.+||..+. ..-..+.. ....-.++.+ ++++++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 6677777764 346888888641 11112211 1111222222 5667777765 2 35889998876
Q ss_pred C
Q 012799 183 K 183 (456)
Q Consensus 183 ~ 183 (456)
+
T Consensus 97 ~ 97 (357)
T 2uvk_A 97 S 97 (357)
T ss_dssp E
T ss_pred c
Confidence 5
No 342
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.47 E-value=1.6 Score=45.68 Aligned_cols=147 Identities=12% Similarity=0.196 Sum_probs=85.8
Q ss_pred EEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccccccCc-
Q 012799 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGH- 192 (456)
Q Consensus 114 ~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~- 192 (456)
.-.+|..+.+|.-. ..++.|||+++...+..+.- ...|.-=.|-.+. .|+..+ +..|.-|++.......+.+..|
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence 34677777777654 67899999999888877663 4456666776443 444444 3479999997543333234333
Q ss_pred ---ccceEEEEecccccCCCCCEEEEEe-------CCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC---eEEEEeC
Q 012799 193 ---KKWITGISWEPVHLNAPCRRFVSAS-------KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG---VIYTGSQ 259 (456)
Q Consensus 193 ---~~~v~~~~~~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~ 259 (456)
...|..-..++ +.+.++..| -.|.+.+|..+.+. .+.+.||.+....+....+. .+++-..
T Consensus 147 ~L~~~QIinY~~d~-----~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~ 220 (1630)
T 1xi4_A 147 SLAGCQIINYRTDA-----KQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAV 220 (1630)
T ss_pred hcccCeeEEeeeCC-----CCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEE
Confidence 23344444444 666666433 35788999876543 33455666555444443211 2333221
Q ss_pred ----CCcEEEEECCC
Q 012799 260 ----DCTIKVWETTQ 270 (456)
Q Consensus 260 ----dg~i~iwd~~~ 270 (456)
.+.+++.++..
T Consensus 221 ~~~~g~kLhi~Ei~~ 235 (1630)
T 1xi4_A 221 RGQAGGKLHIIEVGT 235 (1630)
T ss_pred ecCCCceEEEEecCC
Confidence 26788888754
No 343
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.45 E-value=1.2 Score=39.03 Aligned_cols=75 Identities=17% Similarity=0.110 Sum_probs=48.8
Q ss_pred CcccEEEEEECCCCCeEEEEECCCcEEEEeCCCCccee--EE----ecCCCCEEEEEEcCC---CCEEEEE---eCCCeE
Q 012799 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KC----TGHKNWVLCIAWSAD---GKHLVSG---SKAGEL 174 (456)
Q Consensus 107 h~~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~--~~----~~~~~~v~~~~~~~~---~~~l~s~---~~dg~i 174 (456)
.-..-..|+|.|||+++++--..|.|++++..+++... .+ .........|+++|+ +..|... ..++.|
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 34456899999999977776548999999866554321 11 123567899999995 3444433 234566
Q ss_pred EEEeCCC
Q 012799 175 QCWDPQT 181 (456)
Q Consensus 175 ~vwd~~~ 181 (456)
.-|.+..
T Consensus 110 ~R~~~~~ 116 (347)
T 3das_A 110 VRMLYDE 116 (347)
T ss_dssp EEEEBCT
T ss_pred EEEEeCC
Confidence 6666654
No 344
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.23 E-value=1.2 Score=43.58 Aligned_cols=149 Identities=10% Similarity=0.055 Sum_probs=78.0
Q ss_pred CCCCeEEEEECC----CcEEEEeCCCCcceeEE-e------cCCCCEEEEEEcC-CCCEEEEEeCCC------eEEEEeC
Q 012799 118 PDGRQLASGSGD----TTVRLWDLNTQTPMFKC-T------GHKNWVLCIAWSA-DGKHLVSGSKAG------ELQCWDP 179 (456)
Q Consensus 118 ~~~~~l~~~~~d----~~v~vwd~~~~~~~~~~-~------~~~~~v~~~~~~~-~~~~l~s~~~dg------~i~vwd~ 179 (456)
.++.+++.|+.+ ..+.+||..+++-...- . .....-.+++..+ +++.++.||.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777643 36888888766432221 1 1111112333333 677777877543 4788888
Q ss_pred CCCCCccc-cccCcccceEEEEecccccCCCCCEEEEEeCCC--cEEEEECCCCeEEEEec-----CcCccEEEEEeCCC
Q 012799 180 QTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDG--DARIWDVSLRKCVICLS-----GHTLAVTCVKWGGD 251 (456)
Q Consensus 180 ~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~ 251 (456)
.+.+-... .+...... .+++... ++..++.||.++ .+.+||..+.+-...-. .......++.+..+
T Consensus 476 ~t~~W~~~~~~p~~R~~-h~~~~~~-----~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFR-HSACSLP-----DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp TTTEEEECCCCSBCCBS-CEEEECT-----TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred CCCcEEECCCCCCCccc-ceEEEEc-----CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 77542211 01111111 1122111 567888887755 69999998775433211 01112233444544
Q ss_pred -C-eEEEEeC--C-----CcEEEEECCCCe
Q 012799 252 -G-VIYTGSQ--D-----CTIKVWETTQGK 272 (456)
Q Consensus 252 -~-~l~~~~~--d-----g~i~iwd~~~~~ 272 (456)
+ .++.|+. + +.+.+||+.+.+
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 5 5555654 2 358889988766
No 345
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.98 E-value=1.4 Score=43.02 Aligned_cols=109 Identities=13% Similarity=0.132 Sum_probs=56.2
Q ss_pred CCCCEEEEEeCC----CeEEEEeCCCCCCcccc-------ccCcccceEEEEecccccCCCCCEEEEEeCC------CcE
Q 012799 160 ADGKHLVSGSKA----GELQCWDPQTGKPSGNP-------LSGHKKWITGISWEPVHLNAPCRRFVSASKD------GDA 222 (456)
Q Consensus 160 ~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d------g~i 222 (456)
.++..++.||.+ ..+.+||..+++-.... .......-..+.+.. ++..++.||.+ ..+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-----~~~lyv~GG~~~~~~~~~dv 470 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-----NNQLLLIGGRKAPHQGLSDN 470 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-----TTEEEEECCBSSTTCBCCCC
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-----CCEEEEEcCCCCCCCccccE
Confidence 466777777754 35888888776432211 011111112222211 44567777653 357
Q ss_pred EEEECCCCeEEEE--ecCcCccEEEEEeCCCCeEEEEeCCC--cEEEEECCCCeE
Q 012799 223 RIWDVSLRKCVIC--LSGHTLAVTCVKWGGDGVIYTGSQDC--TIKVWETTQGKL 273 (456)
Q Consensus 223 ~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~ 273 (456)
.+||..+.+-... +......-.++.+..+..++.|+.++ .+.+||..+.+-
T Consensus 471 ~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W 525 (695)
T 2zwa_A 471 WIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIF 525 (695)
T ss_dssp EEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEE
T ss_pred EEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCce
Confidence 8899887543322 11111122223323333666666544 689999988654
No 346
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.54 E-value=2 Score=36.88 Aligned_cols=140 Identities=7% Similarity=-0.009 Sum_probs=76.4
Q ss_pred CCCCCeEEEEE--CCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCC--------------CeEEEEeCC
Q 012799 117 SPDGRQLASGS--GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA--------------GELQCWDPQ 180 (456)
Q Consensus 117 s~~~~~l~~~~--~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--------------g~i~vwd~~ 180 (456)
++++.+++... .++.|...+.+... ...+... .+--+++++++|+-+... ..|+..++.
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 35677777664 24567777765433 3344322 134557888888877543 357777777
Q ss_pred CCCCccccccCcccceEEEEecccccCCCCCEEEEEe----CCCcEEEEECCCCeEEEEecCcCccEEEEEeCCCC-eEE
Q 012799 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS----KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIY 255 (456)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~ 255 (456)
.++... +.... +..|++ +++.|+... .+..|+..++..... ..+..+.. .++++++ .|+
T Consensus 97 g~~~~~--l~~~~----~~~~s~-----~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~~~~----~~~~~~g~~iy 160 (302)
T 3s25_A 97 GHGSTV--LDPDP----CIYASL-----IGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKNHYL----FTCNTSDRYFY 160 (302)
T ss_dssp SCCCEE--EECSC----EEEEEE-----ETTEEEEEEESSSSCEEEEEEETTSCCC-EEEESSCC----CCSEEETTEEE
T ss_pred CCcceE--eecCC----ccEEEE-----eCCEEEEEeecCCCCceEEEEECCCCCe-EEEeCCCc----eEeeEECCEEE
Confidence 665322 22111 224555 667777665 344566666654333 23333322 2345555 444
Q ss_pred -EEeCCCcEEEEECCCCeEEEEe
Q 012799 256 -TGSQDCTIKVWETTQGKLIREL 277 (456)
Q Consensus 256 -~~~~dg~i~iwd~~~~~~~~~~ 277 (456)
+......|...++..+.....+
T Consensus 161 ~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 161 YNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EECTTTCCEEEEETTTTEEEEEE
T ss_pred EEeCCCceEEEEECCCCCEEEEe
Confidence 4444678888888776544333
No 347
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.21 E-value=2.7 Score=36.90 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=61.6
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCcc-----ccccCcccceEEEEecccccCCCCCEEEEEe--CCC
Q 012799 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG-----NPLSGHKKWITGISWEPVHLNAPCRRFVSAS--KDG 220 (456)
Q Consensus 148 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~--~dg 220 (456)
..-.....|+|.|+|+++++--..|.|++++...++... ............++++|.-. .++..+++-+ .++
T Consensus 29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~-~~g~lYv~yt~~~~~ 107 (347)
T 3das_A 29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYA-SDHMVYAYFTSASDN 107 (347)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHH-HHCEEEEEEECSSSE
T ss_pred cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccc-cCCEEEEEEecCCCC
Confidence 344567899999999877766558999999876554311 01223345678999988210 0233444322 344
Q ss_pred cEEEEECCC----------CeEEE-Eec-CcCccEEEEEeCCCCeEEEE
Q 012799 221 DARIWDVSL----------RKCVI-CLS-GHTLAVTCVKWGGDGVIYTG 257 (456)
Q Consensus 221 ~i~iwd~~~----------~~~~~-~~~-~~~~~v~~~~~~~~~~l~~~ 257 (456)
.|.-|.... .+.+. .+. .....-..+.|.|+|.|+.+
T Consensus 108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt 156 (347)
T 3das_A 108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAG 156 (347)
T ss_dssp EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEE
T ss_pred EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEE
Confidence 565565543 12222 222 11223456899999944443
No 348
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.14 E-value=2.5 Score=36.32 Aligned_cols=159 Identities=9% Similarity=0.028 Sum_probs=85.8
Q ss_pred ceEEEeecccccccccCCcccEEEEEECCCCCeEEEEECC--------------CcEEEEeCCCCcceeEEecCCCCEEE
Q 012799 90 AVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGD--------------TTVRLWDLNTQTPMFKCTGHKNWVLC 155 (456)
Q Consensus 90 ~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~l~~~~~d--------------~~v~vwd~~~~~~~~~~~~~~~~v~~ 155 (456)
.++++...+.....+... . +--++++|++|+.+... ..|+..+++..+... +... . +
T Consensus 38 ~ly~~~~dg~~~~~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~--~--~ 108 (302)
T 3s25_A 38 RLYAMNIDGSNIHKLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD--P--C 108 (302)
T ss_dssp EEEEEETTSCSCEEEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS--C--E
T ss_pred eEEEEcCCCCCCEEccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC--C--c
Confidence 345555444444444322 1 34567889988877543 367777777655333 3212 1 2
Q ss_pred EEEcCCCCEEEEEe--CC--CeEEEEeCCCCCCccccccCcccceEEEEecccccCCCCCEEEEEeC-CCcEEEEECCCC
Q 012799 156 IAWSADGKHLVSGS--KA--GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLR 230 (456)
Q Consensus 156 ~~~~~~~~~l~s~~--~d--g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~ 230 (456)
..|+++++.|+-.. .+ ..|...++...... .+..+.. ..+++ +++.|+..+. ...|...++..+
T Consensus 109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~--~lt~~~~----~~~~~-----~g~~iy~t~~g~~~Iy~~~l~g~ 177 (302)
T 3s25_A 109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKK--KIKNHYL----FTCNT-----SDRYFYYNNPKNGQLYRYDTASQ 177 (302)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEEEETTSCCCE--EEESSCC----CCSEE-----ETTEEEEECTTTCCEEEEETTTT
T ss_pred cEEEEeCCEEEEEeecCCCCceEEEEECCCCCeE--EEeCCCc----eEeeE-----ECCEEEEEeCCCceEEEEECCCC
Confidence 36777888888776 33 34555566543322 2332322 23444 6667765554 678888888776
Q ss_pred eEEEEecCcCccEEEEEeCCCC-eEEEEeCC--CcEEEEECCCCe
Q 012799 231 KCVICLSGHTLAVTCVKWGGDG-VIYTGSQD--CTIKVWETTQGK 272 (456)
Q Consensus 231 ~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d--g~i~iwd~~~~~ 272 (456)
.....+.+ ... ..+.|++ .|+-...+ ..|..-++....
T Consensus 178 ~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 178 SEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp EEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred CEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 65444432 222 2345766 55544433 356666666544
No 349
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=90.06 E-value=11 Score=34.46 Aligned_cols=106 Identities=13% Similarity=0.191 Sum_probs=58.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc-ccc------CcccceEEEEecccccCCCCCEEEEEeC----
Q 012799 150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN-PLS------GHKKWITGISWEPVHLNAPCRRFVSASK---- 218 (456)
Q Consensus 150 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~------~~~~~v~~~~~~~~~~~~~~~~l~~~~~---- 218 (456)
-.....|+|.|+|+++++-...+.|.+++..++..... .+. ........++|+|.- .. +..|..+..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf-~~-~g~lYv~~s~~~~ 103 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDF-KN-NPYIYISGTFKNP 103 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTT-TT-SCEEEEEEEEECT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCc-Cc-CCEEEEEEecccc
Confidence 34678999999998766654445788888655543210 011 124567799999821 11 344444332
Q ss_pred ---------CCcEEEEECCCC-------eEEE-Eec-CcCccEEEEEeCCCCeEEEE
Q 012799 219 ---------DGDARIWDVSLR-------KCVI-CLS-GHTLAVTCVKWGGDGVIYTG 257 (456)
Q Consensus 219 ---------dg~i~iwd~~~~-------~~~~-~~~-~~~~~v~~~~~~~~~~l~~~ 257 (456)
...|.-++.... +.+. .+. ........++|.|+|.|+.+
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~ 160 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYT 160 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEE
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEE
Confidence 134555554321 1122 122 12234788999999944443
No 350
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=88.77 E-value=14 Score=33.86 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=34.7
Q ss_pred cEEEEEECCCCC-eEEEEECCCcEEEEeCCCC---cceeEEe---------cCCCCEEEEEEcCC
Q 012799 110 AVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQ---TPMFKCT---------GHKNWVLCIAWSAD 161 (456)
Q Consensus 110 ~V~~~~~s~~~~-~l~~~~~d~~v~vwd~~~~---~~~~~~~---------~~~~~v~~~~~~~~ 161 (456)
.-..|+|.|||. .|+.+...|.|++++.... ..+..+. ........|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 457899999996 4555668899999975432 1222221 12467889999996
No 351
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=86.97 E-value=14 Score=37.60 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=33.4
Q ss_pred ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEE
Q 012799 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC 146 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~ 146 (456)
..|.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 46788888888899999999999999999999887764
No 352
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=86.03 E-value=18 Score=32.17 Aligned_cols=45 Identities=11% Similarity=0.080 Sum_probs=25.6
Q ss_pred eEEEECCC-CCEEEEEECCCcEEEEeCCCCeEEEEEecccccEEEEE
Q 012799 364 NHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIR 409 (456)
Q Consensus 364 ~~~~~sp~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 409 (456)
..++++|. ...|+.++.++.|..-+ ..|+.-..+..+-..+.++.
T Consensus 344 ~~~~~~p~~~~~l~~g~~~g~l~~S~-D~G~tW~~~~~~lp~~~~v~ 389 (394)
T 3b7f_A 344 QAMTADAHAPVGVYFGTTGGEIWASA-DEGEHWQCIASHLPHIYAVQ 389 (394)
T ss_dssp BSEEECCSSSCCEEEECTTSCEEEES-STTSBCEEEECSCSCEEEEE
T ss_pred EEEEECCCCCCEEEEEeCCCeEEEEC-CCCCCceEcccCCCCeeEEE
Confidence 35788874 34466666666555432 34555555554555677763
No 353
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=85.37 E-value=8.7 Score=35.93 Aligned_cols=75 Identities=11% Similarity=0.030 Sum_probs=50.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCC------CCcc--cc---ccCcccceEEEEecccccCCCCCEEEEEe
Q 012799 150 KNWVLCIAWSADGKHLVSGSK-AGELQCWDPQTG------KPSG--NP---LSGHKKWITGISWEPVHLNAPCRRFVSAS 217 (456)
Q Consensus 150 ~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~------~~~~--~~---~~~~~~~v~~~~~~~~~~~~~~~~l~~~~ 217 (456)
......+..+|||++++.++. +.++.++|++.. +... .. ...-.......+|.+ +|....+--
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~-----~G~aYTtlf 396 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDG-----RGNAYTTLF 396 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECS-----SSEEEEEET
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECC-----CCceEeeee
Confidence 344567889999999988765 778999998742 1100 00 011123345677776 776666667
Q ss_pred CCCcEEEEECCC
Q 012799 218 KDGDARIWDVSL 229 (456)
Q Consensus 218 ~dg~i~iwd~~~ 229 (456)
-|..|.-|++..
T Consensus 397 idSqvvkWni~~ 408 (638)
T 3sbq_A 397 IDSQVVKWNMEE 408 (638)
T ss_dssp TTTEEEEEEHHH
T ss_pred ecceEEEEeccH
Confidence 899999999864
No 354
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.07 E-value=40 Score=35.21 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=30.8
Q ss_pred EeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEe
Q 012799 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR 399 (456)
Q Consensus 363 v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 399 (456)
+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 4445566788899999999999999999999988754
No 355
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=83.12 E-value=43 Score=34.09 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=32.4
Q ss_pred cEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEe
Q 012799 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR 399 (456)
Q Consensus 362 ~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 399 (456)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46677778888899999999999999999999887653
No 356
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=81.03 E-value=33 Score=31.39 Aligned_cols=109 Identities=17% Similarity=0.223 Sum_probs=59.7
Q ss_pred CCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCC---Cccc---ccc-----CcccceEEEEecccccCCCCCEEEEEeC
Q 012799 151 NWVLCIAWSADGK-HLVSGSKAGELQCWDPQTGK---PSGN---PLS-----GHKKWITGISWEPVHLNAPCRRFVSASK 218 (456)
Q Consensus 151 ~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~---~~~~---~~~-----~~~~~v~~~~~~~~~~~~~~~~l~~~~~ 218 (456)
.....|+|.|+|. .|+++...|.|++++..... .+.. ... ........++++|.- ..++..+++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f-~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNY-KKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTH-HHHCEEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCC-cCCCEEEEEEeC
Confidence 4568899999996 56666789999999754321 1110 011 114567889999821 112334444332
Q ss_pred C------------CcEEEEECCC----------CeEEEEec--CcCccEEEEEeCCCCeEEEEeCC
Q 012799 219 D------------GDARIWDVSL----------RKCVICLS--GHTLAVTCVKWGGDGVIYTGSQD 260 (456)
Q Consensus 219 d------------g~i~iwd~~~----------~~~~~~~~--~~~~~v~~~~~~~~~~l~~~~~d 260 (456)
+ ..|.-|.+.. .+.+..+. ........|+|.|||.|+.+..|
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 1344454431 23333332 22334678999999955554444
No 357
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=77.17 E-value=39 Score=29.96 Aligned_cols=140 Identities=6% Similarity=-0.075 Sum_probs=67.1
Q ss_pred CeEEEEECCCcEEEEeCCC-CcceeEE--ecCCCCEEEEEEcC-CCCEEEEEeCCC----eEEEEeCCCCCCccccc---
Q 012799 121 RQLASGSGDTTVRLWDLNT-QTPMFKC--TGHKNWVLCIAWSA-DGKHLVSGSKAG----ELQCWDPQTGKPSGNPL--- 189 (456)
Q Consensus 121 ~~l~~~~~d~~v~vwd~~~-~~~~~~~--~~~~~~v~~~~~~~-~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~--- 189 (456)
..|..|+..| +.+++... +..-... ......|.+|++.| +...|..++..| .|...+ +.++.-....
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPP 100 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccc
Confidence 3566777776 55555432 2222222 12345799999998 334455555444 343332 2232211111
Q ss_pred --cC--------cccceEEEEecccccCCC-CCEEEEEeCCCcEEEEECC--CCeEEEEec----------------CcC
Q 012799 190 --SG--------HKKWITGISWEPVHLNAP-CRRFVSASKDGDARIWDVS--LRKCVICLS----------------GHT 240 (456)
Q Consensus 190 --~~--------~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~--~~~~~~~~~----------------~~~ 240 (456)
.. ....|.++++.|. + ...+.+++..+.|...+-. +.+.+.... ...
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~----~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~ 176 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHA----SEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDG 176 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCT----TSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCC
T ss_pred cCCCcccccccccccceeEEEeCCC----CCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCC
Confidence 00 1124677877652 2 3556666666655554321 112211110 012
Q ss_pred ccEEEEEeCCC--CeEEEEeCCCcEEEE
Q 012799 241 LAVTCVKWGGD--GVIYTGSQDCTIKVW 266 (456)
Q Consensus 241 ~~v~~~~~~~~--~~l~~~~~dg~i~iw 266 (456)
..+.++.++|. +.++++..++.|...
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s 204 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFES 204 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEE
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEE
Confidence 35788999873 366666655545443
No 358
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=69.30 E-value=20 Score=34.00 Aligned_cols=59 Identities=22% Similarity=0.264 Sum_probs=39.9
Q ss_pred cEeEEEECCCCCEEEEEECC------------CcEEEEeCCCCeEEEEEeccc-ccEEEEEeeeeeeecCCCCceeeecc
Q 012799 362 LVNHVYFSPDGQWVASASFD------------KSIKLWNGTTGKFVAVFRGHV-GPVYQIRFELIYCFRYPSNFYCVVDM 428 (456)
Q Consensus 362 ~v~~~~~sp~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~~~~~~~~~~ 428 (456)
..-.|+|+|.|++++.-..+ +.+.+.+..++++..-+.++. ..++.+
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~-------------------- 536 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGI-------------------- 536 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEE--------------------
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCe--------------------
Confidence 35678999999976553321 235666777787766666554 477788
Q ss_pred cccccceeEecCCCeEEEe
Q 012799 429 SCCMSLYSWSADSRLLLSG 447 (456)
Q Consensus 429 ~~~~~~~~~s~dg~~l~s~ 447 (456)
+|+||++.|+..
T Consensus 537 -------~fspDg~tlfvn 548 (592)
T 3zwu_A 537 -------SFSPDQKTLFVG 548 (592)
T ss_dssp -------EECTTSSEEEEE
T ss_pred -------eECCCCCEEEEE
Confidence 788888877654
No 359
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=63.08 E-value=41 Score=31.67 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=41.6
Q ss_pred ccEeEEEECCCCCEEEEEEC------------CCcEEEEeCCCCeEEEEEecc-cccEEEEEeeeeeeecCCCCceeeec
Q 012799 361 QLVNHVYFSPDGQWVASASF------------DKSIKLWNGTTGKFVAVFRGH-VGPVYQIRFELIYCFRYPSNFYCVVD 427 (456)
Q Consensus 361 ~~v~~~~~sp~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~~~~~~~~~ 427 (456)
.....|+|+++|.+.+.... .+.+..++..+|++...+.+. ...++.+
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGi------------------- 536 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGI------------------- 536 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEE-------------------
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCC-------------------
Confidence 35678999999987663211 125777777778776656543 3467888
Q ss_pred ccccccceeEecCCCeEEEe
Q 012799 428 MSCCMSLYSWSADSRLLLSG 447 (456)
Q Consensus 428 ~~~~~~~~~~s~dg~~l~s~ 447 (456)
+|+||++.|+.+
T Consensus 537 --------afSPD~ktLfV~ 548 (592)
T 4a9v_A 537 --------SFSPDQKTLFVG 548 (592)
T ss_dssp --------EECTTSSEEEEE
T ss_pred --------EECCCCCEEEEE
Confidence 889999887765
No 360
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=61.24 E-value=72 Score=26.69 Aligned_cols=154 Identities=14% Similarity=0.087 Sum_probs=89.0
Q ss_pred cccEEEEEECC--CCCeEEEEECCCcEEEEeCCCCc------ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 012799 108 TEAVLSVAFSP--DGRQLASGSGDTTVRLWDLNTQT------PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (456)
Q Consensus 108 ~~~V~~~~~s~--~~~~l~~~~~d~~v~vwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 179 (456)
.+.|.++.. + +..+++..+.+|.++...+..-. ....+. ..+.+..+........++..+..|.+..+..
T Consensus 67 ~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~ 144 (276)
T 3no0_A 67 EEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSV 144 (276)
T ss_dssp TCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEh
Confidence 556666644 4 46789999999999999865432 112233 2345666655556668888899999877765
Q ss_pred CCCCCccc-------cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC-------CeEEEEecCcCccEEE
Q 012799 180 QTGKPSGN-------PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-------RKCVICLSGHTLAVTC 245 (456)
Q Consensus 180 ~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~ 245 (456)
..-....+ ........|.++...+ ++..++..+..|.++...+.. ++-+..+ ...+.+..
T Consensus 145 ~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~-----~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~ 218 (276)
T 3no0_A 145 REVPPSTPGARGVQGIKLEKNDETSGLRIWN-----GEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVD 218 (276)
T ss_dssp GGSCBCCTTCCCEECCCCCTTCCEEEEEEES-----SCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEE
T ss_pred hhCCCcCCCCCCEEEEccCCCCEEEEEEEeC-----CCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEE
Confidence 32111100 1111234455554433 456888999999999887642 2223333 22334444
Q ss_pred EE-eCCCCeEEEEeCCCcEEE--EECC
Q 012799 246 VK-WGGDGVIYTGSQDCTIKV--WETT 269 (456)
Q Consensus 246 ~~-~~~~~~l~~~~~dg~i~i--wd~~ 269 (456)
+. ..++..++..+.+|.+.. ++..
T Consensus 219 ~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 219 LIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 33 333336666777777766 6543
No 361
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=60.68 E-value=18 Score=35.02 Aligned_cols=38 Identities=11% Similarity=0.309 Sum_probs=31.3
Q ss_pred ccEeEEEECCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 012799 361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG 400 (456)
Q Consensus 361 ~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 400 (456)
..|.++.+ +..++++-+.|.++|+|++++++++.+..-
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 44666655 477999999999999999999999887664
No 362
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=59.84 E-value=76 Score=26.53 Aligned_cols=154 Identities=12% Similarity=0.007 Sum_probs=88.7
Q ss_pred cccEEEEEECCCCCeEEEEECCCcEEEEe---CCCCcceeEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCC
Q 012799 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWD---LNTQTPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGK 183 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd---~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~ 183 (456)
.+.+..+........|+..+.+|.++--. +........+. ....|..+.... +..+++..+.+|.++-..+..-.
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 45666666655566677777888766543 22211100133 345566654422 56789999999999998765432
Q ss_pred -----CccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC---------CeEEEEecCcCccEEEEEe-
Q 012799 184 -----PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL---------RKCVICLSGHTLAVTCVKW- 248 (456)
Q Consensus 184 -----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~- 248 (456)
.....+. ....+..+.... ....++..+..|.+..+.... |.....+.. ...|..+..
T Consensus 102 ~~~~G~~~i~lk-egD~l~~~~~~~-----~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~ 174 (276)
T 3no0_A 102 YKAQGMPIIKLT-EGDEVVSIASSV-----DETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIW 174 (276)
T ss_dssp TCSTTEECSCCC-TTCCEEEEEECC-----SSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEE
T ss_pred hhcCCeEEEecC-CCCEEEEEEEeC-----CCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEe
Confidence 1111122 234454444333 445788899999988887532 222222322 344555444
Q ss_pred CCCCeEEEEeCCCcEEEEECC
Q 012799 249 GGDGVIYTGSQDCTIKVWETT 269 (456)
Q Consensus 249 ~~~~~l~~~~~dg~i~iwd~~ 269 (456)
.++..++..+..|.++...+.
T Consensus 175 ~~~~~ll~~T~~G~~kr~~~~ 195 (276)
T 3no0_A 175 NGEPYLLVITAKGRVKKISHE 195 (276)
T ss_dssp SSCSEEEEEETTSCEEEEEGG
T ss_pred CCCCEEEEEeCCCcEEEeEHH
Confidence 334488888999998888764
No 363
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=57.00 E-value=95 Score=26.75 Aligned_cols=156 Identities=12% Similarity=0.071 Sum_probs=88.9
Q ss_pred cccEEEEEECC---CCCeEEEEECCCcEEEEeCCCCc-------ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 012799 108 TEAVLSVAFSP---DGRQLASGSGDTTVRLWDLNTQT-------PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (456)
Q Consensus 108 ~~~V~~~~~s~---~~~~l~~~~~d~~v~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 177 (456)
.+.|.++..-+ +..++++.+.+|.++.-.+..-. ....+.. .+.+..+........|+..+..|.+..+
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf 172 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRF 172 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEE
Confidence 45565554433 57799999999999998765421 1222333 3455555555566678888899998888
Q ss_pred eCC--CCCCccc-------cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC-------eEEEEec--Cc
Q 012799 178 DPQ--TGKPSGN-------PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-------KCVICLS--GH 239 (456)
Q Consensus 178 d~~--~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~--~~ 239 (456)
... .-....+ .-......|.++...+ ++..++..+..|.++.-.+..- +-+..++ ..
T Consensus 173 ~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~-----~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~ 247 (327)
T 3uc1_A 173 SATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVR-----EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR 247 (327)
T ss_dssp ECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECC-----TTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTT
T ss_pred ECcccccCcCCcCCCCeeeecCCCCCEEEEEEEEC-----CCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCC
Confidence 766 2211111 1112234566655443 4568999999999988876422 2222222 21
Q ss_pred CccEEEEE-eCCCCeEEEEeCCCcEEEEECC
Q 012799 240 TLAVTCVK-WGGDGVIYTGSQDCTIKVWETT 269 (456)
Q Consensus 240 ~~~v~~~~-~~~~~~l~~~~~dg~i~iwd~~ 269 (456)
.+.+..+. ..++..++..+.+|.+.-++..
T Consensus 248 ~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 248 RGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp TCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred CCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 23333333 3333366666777776666543
No 364
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=56.47 E-value=65 Score=30.34 Aligned_cols=61 Identities=23% Similarity=0.169 Sum_probs=42.7
Q ss_pred ccEEEEEECCCCCeEEEEEC------------CCcEEEEeCCCCcceeEEecC-CCCEEEEEEcCCCCEEEEEe
Q 012799 109 EAVLSVAFSPDGRQLASGSG------------DTTVRLWDLNTQTPMFKCTGH-KNWVLCIAWSADGKHLVSGS 169 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~~------------d~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~ 169 (456)
.....|.|.++|.+.++... ...|..++..+++....+.+. ...++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 56778999999987763321 125666676667765555433 46789999999999887753
No 365
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=55.73 E-value=51 Score=31.28 Aligned_cols=59 Identities=25% Similarity=0.194 Sum_probs=40.8
Q ss_pred cEEEEEECCCCCeEEEEECC------------CcEEEEeCCCCcceeEEecC-CCCEEEEEEcCCCCEEEEE
Q 012799 110 AVLSVAFSPDGRQLASGSGD------------TTVRLWDLNTQTPMFKCTGH-KNWVLCIAWSADGKHLVSG 168 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~~~~~d------------~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~ 168 (456)
..-.|+|+|.|++++.-..+ ..+.+.+..+++...-+.+. ...++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 45678999999966654322 23555666666665555543 5789999999999887765
No 366
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=55.69 E-value=1e+02 Score=26.61 Aligned_cols=154 Identities=8% Similarity=-0.000 Sum_probs=87.7
Q ss_pred cccEEEEEECCCCCeEEEEECCCcEEEEe---CCC------Cccee---EEecCCCCEEEEE-EcC--CCCEEEEEeCCC
Q 012799 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWD---LNT------QTPMF---KCTGHKNWVLCIA-WSA--DGKHLVSGSKAG 172 (456)
Q Consensus 108 ~~~V~~~~~s~~~~~l~~~~~d~~v~vwd---~~~------~~~~~---~~~~~~~~v~~~~-~~~--~~~~l~s~~~dg 172 (456)
.+.+..+........|+.-+..|.++-.. +.. |.++. .+. ....|..+. ... +..+++..+.+|
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G 119 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNG 119 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTS
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCC
Confidence 44555555555556666666777665544 332 22211 122 234455544 432 578999999999
Q ss_pred eEEEEeCCCCCCc------cccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC--CC---------eEEEE
Q 012799 173 ELQCWDPQTGKPS------GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS--LR---------KCVIC 235 (456)
Q Consensus 173 ~i~vwd~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~---------~~~~~ 235 (456)
.++--.+..-... ...+.. ...+..+.... ....++..+..|.+..+... .- .....
T Consensus 120 ~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-----~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~ 193 (327)
T 3uc1_A 120 LVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-----AGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMR 193 (327)
T ss_dssp EEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-----TTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSC
T ss_pred EEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-----CCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeec
Confidence 9998876542211 111222 34444444333 44678888999998888766 21 11112
Q ss_pred ecCcCccEEEEEeCCCC-eEEEEeCCCcEEEEECC
Q 012799 236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT 269 (456)
Q Consensus 236 ~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~iwd~~ 269 (456)
+. ....|.++...+++ .++..+..|.++.-.+.
T Consensus 194 L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~ 227 (327)
T 3uc1_A 194 FN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIE 227 (327)
T ss_dssp CC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred CC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHH
Confidence 22 23456666555444 88889999998887653
No 367
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=54.91 E-value=22 Score=34.43 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=30.4
Q ss_pred ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEec
Q 012799 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG 148 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~ 148 (456)
..|.++.+ +..++++-+.|.++|+|++.+++++.+..-
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 35666655 467999999999999999999988776553
No 368
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=52.01 E-value=1.3e+02 Score=26.64 Aligned_cols=142 Identities=14% Similarity=0.168 Sum_probs=77.8
Q ss_pred CeEEEEECCCcEEEEeCCCC--------cce---eEEec-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc-
Q 012799 121 RQLASGSGDTTVRLWDLNTQ--------TPM---FKCTG-HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN- 187 (456)
Q Consensus 121 ~~l~~~~~d~~v~vwd~~~~--------~~~---~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~- 187 (456)
...+.-..||.|+.|-.... ... ..+.. ....+..++.+....+.+.-..||.|..|-......+..
T Consensus 63 ~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g 142 (389)
T 3kci_A 63 QTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG 142 (389)
T ss_dssp TEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSS
T ss_pred CeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCC
Confidence 34445567788888854321 111 11111 223455567766667777778899999996543211110
Q ss_pred ---------cccC-cccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC----------e-EEEEec-CcCccEEE
Q 012799 188 ---------PLSG-HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR----------K-CVICLS-GHTLAVTC 245 (456)
Q Consensus 188 ---------~~~~-~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------~-~~~~~~-~~~~~v~~ 245 (456)
.... ....|..++. ...+.++...+|.|+.|-.... . ....+. .....|..
T Consensus 143 ~~~~~~~p~~v~~l~~~~i~~va~-------G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ 215 (389)
T 3kci_A 143 NRSPCDRPRVIESLRGIEVVDVAA-------GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVD 215 (389)
T ss_dssp SCCCEEEEEECGGGTTSCEEEEEE-------CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEE
T ss_pred CCccCcCCeEecccCCCeEEEEEe-------CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEE
Confidence 0000 1123445543 3356677788999999965321 1 111111 12345777
Q ss_pred EEeCC-CCeEEEEeCCCcEEEEECC
Q 012799 246 VKWGG-DGVIYTGSQDCTIKVWETT 269 (456)
Q Consensus 246 ~~~~~-~~~l~~~~~dg~i~iwd~~ 269 (456)
++... +...++-..||.|+.|-..
T Consensus 216 ia~G~g~~~t~~l~~~G~v~~wG~n 240 (389)
T 3kci_A 216 IACGSGDAQTLCLTDDDTVWSWGDG 240 (389)
T ss_dssp EEECCSSCEEEEEETTTEEEEEECC
T ss_pred EEEcCCCcEEEEEccCCEEEEEeCC
Confidence 77664 3366667889999999643
No 369
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=51.99 E-value=9.4 Score=39.81 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=32.6
Q ss_pred ccEEEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEe
Q 012799 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT 147 (456)
Q Consensus 109 ~~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~ 147 (456)
..+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 355666777888999999999999999999998877654
No 370
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=46.95 E-value=1.5e+02 Score=26.11 Aligned_cols=109 Identities=14% Similarity=0.177 Sum_probs=58.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc----------cccC-cccceEEEEecccccCCCCCEEEEEeCCCc
Q 012799 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN----------PLSG-HKKWITGISWEPVHLNAPCRRFVSASKDGD 221 (456)
Q Consensus 153 v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----------~~~~-~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~ 221 (456)
+..++- .....+.-..||.|..|-......+.. .... ....+..++... ...+.++-..||.
T Consensus 55 i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~-----G~~h~~al~~~G~ 127 (389)
T 3kci_A 55 PVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNS-----GGKHCLALSSEGE 127 (389)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECT-----TCSEEEEEETTSC
T ss_pred eEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECc-----CCCeEEEEcCCCC
Confidence 444443 344566667889999996543221110 0000 111222233322 4567777888999
Q ss_pred EEEEECCCC-----------eEEEEecC-cCccEEEEEeCCCCeEEEEeCCCcEEEEECC
Q 012799 222 ARIWDVSLR-----------KCVICLSG-HTLAVTCVKWGGDGVIYTGSQDCTIKVWETT 269 (456)
Q Consensus 222 i~iwd~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~ 269 (456)
|+.|-.... .....+.. ....|..++.... ..++...+|.|+.|-..
T Consensus 128 v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~-hs~alt~~G~v~~wG~n 186 (389)
T 3kci_A 128 VYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGA-HSACVTAAGDLYTWGKG 186 (389)
T ss_dssp EEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS-EEEEEETTSCEEEEECC
T ss_pred EEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcC-eEEEEeCCCeEEEeCCC
Confidence 999964321 11112221 1235777776544 55666789999999653
No 371
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=41.00 E-value=88 Score=21.68 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=9.7
Q ss_pred CEEEEEeCCCcEEEEE
Q 012799 211 RRFVSASKDGDARIWD 226 (456)
Q Consensus 211 ~~l~~~~~dg~i~iwd 226 (456)
.+.++-..||.+.+|+
T Consensus 86 ~~~l~Lq~dGNlvly~ 101 (111)
T 3mez_A 86 NYAATLGPDQHVTIYG 101 (111)
T ss_dssp CCEEEECTTSCEEEEC
T ss_pred CEEEEECCCCeEEEec
Confidence 3455556667777664
No 372
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=39.55 E-value=2.1e+02 Score=25.54 Aligned_cols=108 Identities=13% Similarity=0.024 Sum_probs=61.4
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCccc-----------cccCcccceEEEEecccccCCCCCEEEEEeCCC
Q 012799 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN-----------PLSGHKKWITGISWEPVHLNAPCRRFVSASKDG 220 (456)
Q Consensus 152 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg 220 (456)
.|..|+. .+.+.+.-..||.|..|-......+.. ........|..++. ...+.++-..||
T Consensus 76 ~v~~va~--G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~-------G~~hs~al~~~G 146 (423)
T 3mvd_K 76 DAVDISA--GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISA-------GDSHSACLLEDG 146 (423)
T ss_dssp SEEEEEE--CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEE-------CSSEEEEEETTS
T ss_pred CceEEee--CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEc-------CcCeEEEEeCCC
Confidence 4655555 455667778899999996543221110 00011234555554 335667778899
Q ss_pred cEEEEEC--C-CCe---------EEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECC
Q 012799 221 DARIWDV--S-LRK---------CVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT 269 (456)
Q Consensus 221 ~i~iwd~--~-~~~---------~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~ 269 (456)
.|+.|-. . .++ ...........|..++.... ..++-..+|.|+.|-..
T Consensus 147 ~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~-hs~alt~~G~v~~wG~n 206 (423)
T 3mvd_K 147 RVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGAD-HLVILTTAGKVFTVGCA 206 (423)
T ss_dssp CEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSS-EEEEEETTSCEEEEECC
T ss_pred eEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCC-eEEEEecCCeEEEeeCC
Confidence 9999975 2 222 11111123345777776544 55566789999999643
No 373
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=39.13 E-value=1.8e+02 Score=24.71 Aligned_cols=186 Identities=11% Similarity=0.070 Sum_probs=96.9
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCCccc--------cccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC---
Q 012799 160 ADGKHLVSGSKAGELQCWDPQTGKPSGN--------PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS--- 228 (456)
Q Consensus 160 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--- 228 (456)
|+...+++.+.+|.|+--.+.+-+.... .+. ....+..+.... ....++..+..|.++-+...
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~-----~~~~ll~fT~~G~~~~~~~~elp 74 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVAN-----THDHILCFSSRGRVYSMKVYQLP 74 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEE-----TTCEEEEEETTSEEEEEEGGGSC
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEEC-----CCCEEEEEECCCEEEEEEhhHCc
Confidence 3556788899999998777654322110 011 223333333222 44677888888887666542
Q ss_pred ------CCeEEE---EecCcCccEEEEEe----CCCCeEEEEeCCCcEEEEECCC-------CeEEEEeecCCcceEEEE
Q 012799 229 ------LRKCVI---CLSGHTLAVTCVKW----GGDGVIYTGSQDCTIKVWETTQ-------GKLIRELKGHGHWVNSLA 288 (456)
Q Consensus 229 ------~~~~~~---~~~~~~~~v~~~~~----~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~i~~~~ 288 (456)
.|.++. .+. ....|..+.. .++..++..+..|.++-..+.. +.....+... +.+..+.
T Consensus 75 ~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~ 152 (307)
T 1zi0_A 75 EATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVD 152 (307)
T ss_dssp CCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEE
T ss_pred CCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEE
Confidence 122211 122 2334555543 2333788899999999887642 1111112212 2232222
Q ss_pred ecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC--------Ccccccccc
Q 012799 289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ--------PKTRMTGHQ 360 (456)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------~~~~~~~~~ 360 (456)
.... .+.++..+.+|.+..++...-.. ....+. ..
T Consensus 153 ~~~~------------------------------------~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~ 195 (307)
T 1zi0_A 153 LTSG------------------------------------EDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EG 195 (307)
T ss_dssp EECT------------------------------------TCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TT
T ss_pred EeCC------------------------------------CCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CC
Confidence 2211 34577888888888877432111 011122 23
Q ss_pred ccEeEEEECCCCCEEEEEECCCcEEEEeCC
Q 012799 361 QLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (456)
Q Consensus 361 ~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 390 (456)
..|.++....++..|++.+..|.++-.++.
T Consensus 196 d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 196 DKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp CCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred CEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 456666555556678888889988888763
No 374
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=37.51 E-value=3e+02 Score=26.83 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=24.3
Q ss_pred cEEEEE-ECCCCCeEEEE-E----CCCcEEEEeCCCCcce
Q 012799 110 AVLSVA-FSPDGRQLASG-S----GDTTVRLWDLNTQTPM 143 (456)
Q Consensus 110 ~V~~~~-~s~~~~~l~~~-~----~d~~v~vwd~~~~~~~ 143 (456)
....+. ++|++++++.+ | .-..++++|+.+++.+
T Consensus 130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~ 169 (711)
T 4hvt_A 130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFV 169 (711)
T ss_dssp EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEEC
T ss_pred EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcC
Confidence 344555 89999987765 2 2237999999998765
No 375
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=36.66 E-value=3.2e+02 Score=26.97 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=37.0
Q ss_pred cccEEEEEECCC-CCeEEEEECCCcEEEEeCCCCcceeEEecC-------CCCEEEEEEcCC-CCEEEEEe
Q 012799 108 TEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQTPMFKCTGH-------KNWVLCIAWSAD-GKHLVSGS 169 (456)
Q Consensus 108 ~~~V~~~~~s~~-~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~-~~~l~s~~ 169 (456)
.+.|.+|+++|. ...+.+++..+.|...+ +.++.-..+..+ ...+.+|++.|. .+.++.+.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~ 83 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ 83 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEe
Confidence 468999999995 35566677667665554 333322222221 246999999984 34444443
No 376
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=33.40 E-value=1.6e+02 Score=27.18 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=18.1
Q ss_pred eEecCCCeEEEeeCCCceEE
Q 012799 436 SWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 436 ~~s~dg~~l~s~s~Dg~v~i 455 (456)
.+++++.+|..++.++.++|
T Consensus 468 ~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 468 ELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEETTTTEEEEEBSSCEEEE
T ss_pred EEcCCCCEEEEEECCeEEEE
Confidence 88999999999999998875
No 377
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=32.64 E-value=2.8e+02 Score=26.77 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=18.1
Q ss_pred eEecCCCeEEEeeCCCceEE
Q 012799 436 SWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 436 ~~s~dg~~l~s~s~Dg~v~i 455 (456)
.+++++++|+.++.++.++|
T Consensus 476 ~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 476 ELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEETTTTEEEEEBSSCEEEE
T ss_pred EEcCCCCEEEEEECCEEEEE
Confidence 88999999999999988876
No 378
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=32.53 E-value=2.1e+02 Score=23.52 Aligned_cols=141 Identities=12% Similarity=0.021 Sum_probs=74.2
Q ss_pred eEEEEECCCcEEEEeCCCCc-ceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEE---eCCCCCCcc----ccc-cCc
Q 012799 122 QLASGSGDTTVRLWDLNTQT-PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW---DPQTGKPSG----NPL-SGH 192 (456)
Q Consensus 122 ~l~~~~~d~~v~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw---d~~~~~~~~----~~~-~~~ 192 (456)
.+++.+.+|.|+--...... ....+... +.+..+........|+..+..|.+.-. ++..++... ..+ ...
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~ 82 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPP 82 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCT
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCC
Confidence 45566677777665543211 11123323 334444333344456666778875544 442222111 111 122
Q ss_pred ccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC-------CeEEEEecCcCccEEEEEeC--CCCeEEEEeCCCcE
Q 012799 193 KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-------RKCVICLSGHTLAVTCVKWG--GDGVIYTGSQDCTI 263 (456)
Q Consensus 193 ~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i 263 (456)
...|.++.... ++.+++.++..|.++...+.. +.....++. ...+..+... ++..++..+.+|.+
T Consensus 83 ~e~Iv~~~~~~-----~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~ 156 (256)
T 1zvt_A 83 GATVDHMLMES-----DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRM 156 (256)
T ss_dssp TCCEEEEECCC-----TTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEE
T ss_pred CCEEEEEEEeC-----CCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeE
Confidence 34566664322 456788999999999988742 233333332 2334333333 33478888888888
Q ss_pred EEEECC
Q 012799 264 KVWETT 269 (456)
Q Consensus 264 ~iwd~~ 269 (456)
..++..
T Consensus 157 lrf~~~ 162 (256)
T 1zvt_A 157 LMFPVS 162 (256)
T ss_dssp EEEEGG
T ss_pred EEEEHH
Confidence 888764
No 379
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=31.48 E-value=2.4e+02 Score=23.95 Aligned_cols=150 Identities=12% Similarity=0.058 Sum_probs=82.5
Q ss_pred CCCCCeEEEEECCCcEEEEeCCCCcc-------e--eEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC---CC--
Q 012799 117 SPDGRQLASGSGDTTVRLWDLNTQTP-------M--FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ---TG-- 182 (456)
Q Consensus 117 s~~~~~l~~~~~d~~v~vwd~~~~~~-------~--~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~---~~-- 182 (456)
-++..++++.+.+|.|+--.+..-+. + ..+. -.+.+..+........++..+..|.+.-.... ..
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 34667888999999999886643211 1 1122 22345555555556677888888886665442 22
Q ss_pred ----CCccccc-cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC-------CeEEEEecCcCccEEEEEe-C
Q 012799 183 ----KPSGNPL-SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-------RKCVICLSGHTLAVTCVKW-G 249 (456)
Q Consensus 183 ----~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~-~ 249 (456)
..+...+ ......|.++...+ .+ .+..+++..+..|.++...+.. +.....+.. ...+..+.. .
T Consensus 84 ~~~G~~i~~~l~l~~~e~i~~~~~~~-~~-~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~ 160 (312)
T 1suu_A 84 ASKGQNISELINLGDQEEILTIKNSK-DL-TDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVF 160 (312)
T ss_dssp ----CBGGGTSCCCTTCCEEEEEEES-CC-CTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEEC
T ss_pred cCCCcChhhccCCCCCCEEEEEEEec-cC-CCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeC
Confidence 1111011 11223444443221 01 1346788999999999988743 222223333 344544444 3
Q ss_pred CCCeEEEEeCCCcEEEEECCC
Q 012799 250 GDGVIYTGSQDCTIKVWETTQ 270 (456)
Q Consensus 250 ~~~~l~~~~~dg~i~iwd~~~ 270 (456)
++..++..+.+|.+..+....
T Consensus 161 ~~~~i~l~T~~G~~~r~~~~e 181 (312)
T 1suu_A 161 KDEKVICLSKKGSAFIFNSRD 181 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGG
T ss_pred CCCEEEEEeCCCcEEEEEHHH
Confidence 444788899999988887643
No 380
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=30.97 E-value=3.8e+02 Score=26.09 Aligned_cols=56 Identities=4% Similarity=-0.060 Sum_probs=34.4
Q ss_pred CCCcEEEEecCCCC------CCccc-c-ccccccEeEEEECCCCCEEEEEECCCc--EEEEeCCCCe
Q 012799 337 DDFTMFLWEPAVSK------QPKTR-M-TGHQQLVNHVYFSPDGQWVASASFDKS--IKLWNGTTGK 393 (456)
Q Consensus 337 ~dg~i~iwd~~~~~------~~~~~-~-~~~~~~v~~~~~sp~~~~l~s~~~dg~--i~iwd~~~~~ 393 (456)
..+.|...|+.... ..... + ......+..+.+..+ .++++...+|. +.++++.+++
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~ 383 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQ 383 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTE
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCc
Confidence 46778888876531 11111 2 223456788888876 56777777764 6677766664
No 381
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=29.67 E-value=3e+02 Score=24.45 Aligned_cols=149 Identities=11% Similarity=0.040 Sum_probs=77.2
Q ss_pred cEEEEEECCCCCeEEEEECCCcEEEEeCCCCcc------------eeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 012799 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP------------MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (456)
Q Consensus 110 ~V~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 177 (456)
.|..++.. +.+.+.-..||.|+.|-...... ..........|..|+.. ..+.+.-..||.|..|
T Consensus 76 ~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G--~~hs~al~~~G~v~~w 151 (423)
T 3mvd_K 76 DAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAG--DSHSACLLEDGRVFAW 151 (423)
T ss_dssp SEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred CceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcC--cCeEEEEeCCCeEEEE
Confidence 36555554 44566667888999996433110 00111123456666653 3455566789999999
Q ss_pred eC--CCCCCccc--------c-ccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCCC----------------
Q 012799 178 DP--QTGKPSGN--------P-LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR---------------- 230 (456)
Q Consensus 178 d~--~~~~~~~~--------~-~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---------------- 230 (456)
-. .....+.. . .......|..++. ...+.++-..+|.|+.|-....
T Consensus 152 G~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~-------G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~ 224 (423)
T 3mvd_K 152 GSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIAS-------GADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGR 224 (423)
T ss_dssp ECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEE-------CSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCST
T ss_pred eCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEec-------CCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccc
Confidence 75 32111110 0 0011223555543 3356677788999999964321
Q ss_pred -------eEEEEecCcCccEEEEEeCCCCeEEEEeCCCcEEEEECC
Q 012799 231 -------KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT 269 (456)
Q Consensus 231 -------~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~ 269 (456)
.+..........|..++......++.-..+|.|+.|-..
T Consensus 225 ~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n 270 (423)
T 3mvd_K 225 RGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLN 270 (423)
T ss_dssp TTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred cccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCC
Confidence 111111122334566655533344444688889888643
No 382
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=29.28 E-value=2.6e+02 Score=23.70 Aligned_cols=187 Identities=16% Similarity=0.123 Sum_probs=100.5
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCCcc--------ccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC--
Q 012799 160 ADGKHLVSGSKAGELQCWDPQTGKPSG--------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-- 229 (456)
Q Consensus 160 ~~~~~l~s~~~dg~i~vwd~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-- 229 (456)
++..++++.+.+|.|+--.+..-+... ..+. ....+..+.... ....++..+..|.++-+....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~-----~~~~ll~~T~~G~~~~~~~~~ip 79 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVN-----THDYLFMISNEGKLYLINAYEIK 79 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEE-----TTCEEEEEETTSEEEEEEGGGSC
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEEC-----CCCEEEEEECCCeEEEEEHHHCC
Confidence 466788899999999887664332111 0111 223344443333 445788888889877776532
Q ss_pred -C------eE---EEEecCcCccEEEEEeC----CCCeEEEEeCCCcEEEEECCCCe-------EEEEeecCCcceEEEE
Q 012799 230 -R------KC---VICLSGHTLAVTCVKWG----GDGVIYTGSQDCTIKVWETTQGK-------LIRELKGHGHWVNSLA 288 (456)
Q Consensus 230 -~------~~---~~~~~~~~~~v~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~i~~~~ 288 (456)
. .+ ...+. ....|..+... ++..++..+..|.++...+..-. ....+.. ...+..+.
T Consensus 80 ~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~ 157 (312)
T 1suu_A 80 DSSRASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAE 157 (312)
T ss_dssp C-------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEE
T ss_pred CCCccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEE
Confidence 1 10 00111 12334444332 23478888999999888764321 1111221 22232222
Q ss_pred ecCcceeeeccccCCCCccCChHHHHHHHHhhhhhccCCCCCEEEEEeCCCcEEEEecCCCCC--------Ccccccccc
Q 012799 289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ--------PKTRMTGHQ 360 (456)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------~~~~~~~~~ 360 (456)
... ..+.++..+.+|.+..+....-.. ....+.. .
T Consensus 158 ~~~------------------------------------~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~ 200 (312)
T 1suu_A 158 IVF------------------------------------KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-G 200 (312)
T ss_dssp EEC------------------------------------TTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-T
T ss_pred EeC------------------------------------CCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-C
Confidence 221 134588889999998887543110 1111222 3
Q ss_pred ccEeEEEECCCCCEEEEEECCCcEEEEeCCC
Q 012799 361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391 (456)
Q Consensus 361 ~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 391 (456)
..|..+..-.++..|++.+..|..+..++..
T Consensus 201 d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 201 DLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 4455655555566788888999988887643
No 383
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=29.01 E-value=1.3e+02 Score=20.06 Aligned_cols=80 Identities=14% Similarity=0.087 Sum_probs=53.1
Q ss_pred cceEEEEEE--CCCCCCCCCcEEeeCCCCHHHHHHHHHHhhcCCCCCceeEEecCeee---eechhhhHhhcCcCcccEE
Q 012799 8 TNNVMCLLT--DPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHEL---LVPLGSYLEKHKVSVEKVL 82 (456)
Q Consensus 8 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 82 (456)
...|.+.|. .....+....+.+|.+.+..++-..+.+-+..++....=+++++..+ -..+++..+.++ .+.-+
T Consensus 3 ~~Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k--~DGfL 80 (91)
T 4gdk_A 3 KKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG--SDGKL 80 (91)
T ss_dssp -CEEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC--BTTEE
T ss_pred CceEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC--CCCEE
Confidence 356888885 33456667889999999999999999888876554444445555432 235666666665 45567
Q ss_pred EEEEecc
Q 012799 83 SIVYQPQ 89 (456)
Q Consensus 83 ~~~~~~~ 89 (456)
-+.|...
T Consensus 81 yv~Ys~~ 87 (91)
T 4gdk_A 81 VLHYCKS 87 (91)
T ss_dssp EEEEESS
T ss_pred EEEEeCc
Confidence 7777643
No 384
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=28.91 E-value=1.5e+02 Score=20.59 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=29.2
Q ss_pred EEEEECCCCCeEEEEECCCcEEEEeCCCCcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 012799 112 LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (456)
Q Consensus 112 ~~~~~s~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 181 (456)
..+.+..||++++... +..-.+|...+.. ...-..+.+..+|++++... ++.+ +|...+
T Consensus 26 ~~L~~q~dGNLvL~~~-~~~~~vWssnt~~--------~~~~~~l~l~~dGNLVl~d~-~~~~-iW~S~t 84 (113)
T 3mez_B 26 YSLVMRDDCNLVLTKG-SKTNIVWESGTSG--------RGQHCFMRLGHSGELDITDD-RLNT-VFVSNT 84 (113)
T ss_dssp EEEEECTTSCEEEEET-TTTEEEEECCCTT--------SCSSCEEEECTTSCEEEECT-TSCE-EEECSC
T ss_pred EEEEEcCCCEEEEEEC-CCCEEEEECCccc--------CCcCEEEEEeCCCcEEEECC-CCCE-EEECCC
Confidence 3455566666555432 1123456544321 11223566777787766533 3443 676543
No 385
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=27.47 E-value=91 Score=29.20 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=18.4
Q ss_pred ceeEecCCCeEEEeeCCCceEE
Q 012799 434 LYSWSADSRLLLSGSKDSTLKV 455 (456)
Q Consensus 434 ~~~~s~dg~~l~s~s~Dg~v~i 455 (456)
.+.+++++.+|+.++.++.++|
T Consensus 455 ~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 455 DMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEccCCCeEEEEecccccee
Confidence 4488999999999998887765
No 386
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=27.22 E-value=2.9e+02 Score=23.42 Aligned_cols=148 Identities=13% Similarity=0.074 Sum_probs=78.2
Q ss_pred CCCCeEEEEECCCcEEEEeCCCCccee---------EEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEE---eCCCCCC-
Q 012799 118 PDGRQLASGSGDTTVRLWDLNTQTPMF---------KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW---DPQTGKP- 184 (456)
Q Consensus 118 ~~~~~l~~~~~d~~v~vwd~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw---d~~~~~~- 184 (456)
|+..++++.+.+|.|+--.+.+-+... .+.. .+.+..+........|+..+..|.+.-+ ++.....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 355678888999999877765422111 1222 2344444444455667777778875444 4433221
Q ss_pred -----ccccc-cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC-------CeEEEEecCcCccEEEEE-eCC
Q 012799 185 -----SGNPL-SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-------RKCVICLSGHTLAVTCVK-WGG 250 (456)
Q Consensus 185 -----~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~-~~~ 250 (456)
....+ ......|.++...+. + .++.+++..+.+|.++-..+.. +.....+... +.+..+. ...
T Consensus 80 a~G~~i~~~l~l~~~e~i~~~~~~~~-~-~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~ 156 (307)
T 1zi0_A 80 ARGRPIVNLLPLEQDERITAILPVTE-F-EEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSG 156 (307)
T ss_dssp SCCEEGGGTSCCCTTCCEEEEEEESC-C-CTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECT
T ss_pred CCCeEhhhccCCCCCCEEEEEEEecc-C-CCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCC
Confidence 11111 123344555533210 1 1456799999999999987642 2122223333 4444433 344
Q ss_pred CCeEEEEeCCCcEEEEECC
Q 012799 251 DGVIYTGSQDCTIKVWETT 269 (456)
Q Consensus 251 ~~~l~~~~~dg~i~iwd~~ 269 (456)
+..++..+.+|.+..++..
T Consensus 157 ~~~i~l~T~~G~~irf~~~ 175 (307)
T 1zi0_A 157 EDEVMLFSAEGKVVRFKES 175 (307)
T ss_dssp TCEEEEEETTSEEEEEEGG
T ss_pred CCEEEEECCCCcEEEEEHH
Confidence 4478888888988887764
No 387
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=26.09 E-value=3.3e+02 Score=23.84 Aligned_cols=150 Identities=11% Similarity=0.036 Sum_probs=85.2
Q ss_pred ECCCCCeEEEEECCCcEEEEeCCC---------CcceeEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEE---eCCCCC
Q 012799 116 FSPDGRQLASGSGDTTVRLWDLNT---------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW---DPQTGK 183 (456)
Q Consensus 116 ~s~~~~~l~~~~~d~~v~vwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw---d~~~~~ 183 (456)
+-|+..++++.+.+|.|+--.+.. +..-..+. ..+.+..+........|+..+..|.+.-+ ++....
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 346778999999999999865422 11222333 34556666665566677777888875544 443321
Q ss_pred ------Cccccc-cCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECCC-------CeEEEEecCcCccEEEEE-e
Q 012799 184 ------PSGNPL-SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-------RKCVICLSGHTLAVTCVK-W 248 (456)
Q Consensus 184 ------~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~-~ 248 (456)
.....+ ......|.++..... + .++.+++.++..|.++-..+.. +.....+.. ...+..+. .
T Consensus 82 r~a~G~~i~~ll~L~~~e~Iv~~~~~~~-~-~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~ 158 (370)
T 3l6v_A 82 SNARGRPIINWIPLESGERVQAVLPVRE-Y-ADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALT 158 (370)
T ss_dssp TTSCCEEGGGSCCCCTTCCEEEEEEESC-C-CTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEE
T ss_pred cccCCcCHhhccCCCCCCEEEEEEEecc-C-CCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEe
Confidence 111111 122344555443210 1 1346899999999999988642 222222332 33343333 3
Q ss_pred CCCCeEEEEeCCCcEEEEECC
Q 012799 249 GGDGVIYTGSQDCTIKVWETT 269 (456)
Q Consensus 249 ~~~~~l~~~~~dg~i~iwd~~ 269 (456)
..+..++..+.+|.+..++..
T Consensus 159 ~~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 159 DGDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp CSCCEEEEEETTSEEEEEEGG
T ss_pred CCCceEEEEeCCCeEEEEEcc
Confidence 434478888888988888753
No 388
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=23.62 E-value=5.2e+02 Score=25.19 Aligned_cols=59 Identities=14% Similarity=0.093 Sum_probs=34.6
Q ss_pred ccEEEEEECCCC-CeEEEEECCCcEEEEeCCCCcceeEEecC-------CCCEEEEEEcC-CCCEEEEE
Q 012799 109 EAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQTPMFKCTGH-------KNWVLCIAWSA-DGKHLVSG 168 (456)
Q Consensus 109 ~~V~~~~~s~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~-~~~~l~s~ 168 (456)
+.|..|+++|.. ..+..+...+.|...+ +.++.-..+..+ ...|.+|++.| +.+.++.+
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~ 90 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIV 90 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEE
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEE
Confidence 389999999963 4565666556665554 223322222221 24589999998 33444444
No 389
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=22.07 E-value=4e+02 Score=23.33 Aligned_cols=105 Identities=14% Similarity=0.117 Sum_probs=59.7
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCC-------CCCccccccCcccceEEEEecccccCCCCCEEEEEeCCCcEEEEECC---
Q 012799 159 SADGKHLVSGSKAGELQCWDPQT-------GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS--- 228 (456)
Q Consensus 159 ~~~~~~l~s~~~dg~i~vwd~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--- 228 (456)
-|+..++++.+.+|.|+--.+.. ++-....-......+..+.... ....++..+..|.++-+...
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~-----t~d~ll~fT~~G~~~~~~~~eip 78 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVN-----THDTLLTFTSSGKVFWLPVHQLP 78 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEEC-----TTCEEEEEETTSEEEEEEGGGSC
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEec-----CCCEEEEEeCCCeEEEEEHHHCc
Confidence 46778999999999998764422 1111111112234444444333 44677778888887766532
Q ss_pred ------CCeEEEE---ecCcCccEEEEEe-C---CCCeEEEEeCCCcEEEEECC
Q 012799 229 ------LRKCVIC---LSGHTLAVTCVKW-G---GDGVIYTGSQDCTIKVWETT 269 (456)
Q Consensus 229 ------~~~~~~~---~~~~~~~v~~~~~-~---~~~~l~~~~~dg~i~iwd~~ 269 (456)
.|.++.. +. ....|.++.. . ++..++.++..|.++...+.
T Consensus 79 ~~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~ 131 (370)
T 3l6v_A 79 EAGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLS 131 (370)
T ss_dssp BCCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGG
T ss_pred CCCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHH
Confidence 1222211 22 2344555443 2 23389999999999988764
Done!