Query 012800
Match_columns 456
No_of_seqs 747 out of 2085
Neff 12.2
Searched_HMMs 29240
Date Mon Mar 25 16:29:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 7.2E-43 2.4E-47 330.6 42.0 440 4-456 81-583 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.7E-39 1.3E-43 305.2 40.7 419 5-434 115-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 4.1E-31 1.4E-35 236.2 48.2 380 13-437 5-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 5.2E-31 1.8E-35 235.5 47.5 362 85-455 7-371 (388)
5 4g26_A Pentatricopeptide repea 100.0 8.7E-32 3E-36 243.7 25.1 206 25-230 8-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.9E-31 6.4E-36 241.6 24.4 189 7-195 26-223 (501)
7 2gw1_A Mitochondrial precursor 100.0 7E-28 2.4E-32 223.7 38.6 404 6-418 5-479 (514)
8 3fp2_A TPR repeat-containing p 100.0 1.4E-26 4.8E-31 216.2 35.8 427 6-452 24-491 (537)
9 2y4t_A DNAJ homolog subfamily 100.0 2.5E-25 8.4E-30 203.0 41.7 387 24-443 9-445 (450)
10 2y4t_A DNAJ homolog subfamily 100.0 5E-25 1.7E-29 200.9 41.1 306 3-316 22-358 (450)
11 2gw1_A Mitochondrial precursor 100.0 1.5E-25 5.2E-30 208.0 36.4 374 5-386 37-478 (514)
12 3fp2_A TPR repeat-containing p 99.9 3.4E-23 1.2E-27 193.3 35.8 400 3-420 55-494 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 8.3E-22 2.8E-26 173.9 39.7 332 6-368 2-351 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 6.2E-22 2.1E-26 174.7 38.6 329 76-434 2-351 (359)
15 2xm6_A Protein corresponding t 99.9 8.4E-20 2.9E-24 167.8 50.4 380 24-433 24-450 (490)
16 2xm6_A Protein corresponding t 99.9 2.7E-19 9.3E-24 164.4 50.8 364 60-453 25-433 (490)
17 2ooe_A Cleavage stimulation fa 99.9 5.8E-20 2E-24 170.6 45.5 420 3-452 9-492 (530)
18 2ooe_A Cleavage stimulation fa 99.9 1.2E-19 4E-24 168.5 47.0 394 30-453 2-455 (530)
19 3hym_B Cell division cycle pro 99.9 8E-21 2.7E-25 165.6 33.3 199 111-314 21-220 (330)
20 3hym_B Cell division cycle pro 99.9 6E-21 2.1E-25 166.3 32.3 291 41-338 21-321 (330)
21 1fch_A Peroxisomal targeting s 99.9 2.3E-20 8E-25 165.3 27.9 298 126-447 39-354 (368)
22 1fch_A Peroxisomal targeting s 99.9 1.7E-20 5.8E-25 166.2 26.8 298 90-412 38-354 (368)
23 4eqf_A PEX5-related protein; a 99.9 8.6E-20 3E-24 161.4 25.1 266 42-312 65-352 (365)
24 4g1t_A Interferon-induced prot 99.9 2.5E-18 8.6E-23 157.6 35.6 382 6-419 50-461 (472)
25 4eqf_A PEX5-related protein; a 99.9 4.2E-20 1.4E-24 163.4 22.8 232 147-383 65-307 (365)
26 1xi4_A Clathrin heavy chain; a 99.9 7.6E-17 2.6E-21 155.7 44.5 380 5-444 983-1376(1630)
27 1b89_A Protein (clathrin heavy 99.9 1.1E-18 3.7E-23 150.9 28.1 282 19-343 15-303 (449)
28 1b89_A Protein (clathrin heavy 99.9 7.1E-19 2.4E-23 152.1 26.7 335 5-385 30-371 (449)
29 4g1t_A Interferon-induced prot 99.9 4.3E-18 1.5E-22 156.0 33.9 385 41-454 50-461 (472)
30 3cv0_A Peroxisome targeting si 99.8 3.1E-19 1.1E-23 155.3 24.0 280 6-313 20-312 (327)
31 3cv0_A Peroxisome targeting si 99.8 1.2E-18 4.2E-23 151.5 27.2 260 118-384 27-313 (327)
32 3mkr_A Coatomer subunit epsilo 99.8 2.1E-18 7.1E-23 146.3 25.9 272 154-446 6-288 (291)
33 3mkr_A Coatomer subunit epsilo 99.8 5.3E-18 1.8E-22 143.7 27.3 254 14-281 6-264 (291)
34 1xi4_A Clathrin heavy chain; a 99.8 7.9E-16 2.7E-20 148.8 43.3 354 41-448 984-1341(1630)
35 3e4b_A ALGK; tetratricopeptide 99.8 1.1E-17 3.9E-22 151.2 24.8 346 12-386 8-387 (452)
36 3e4b_A ALGK; tetratricopeptide 99.8 2E-16 6.7E-21 143.1 28.3 375 47-452 8-421 (452)
37 3uq3_A Heat shock protein STI1 99.8 1.4E-16 4.8E-21 133.3 24.1 223 182-417 5-236 (258)
38 4e6h_A MRNA 3'-END-processing 99.8 6.7E-14 2.3E-18 130.7 44.1 426 26-455 51-573 (679)
39 2pl2_A Hypothetical conserved 99.8 9.1E-17 3.1E-21 130.2 22.0 199 249-451 2-213 (217)
40 2pl2_A Hypothetical conserved 99.8 6.6E-17 2.3E-21 131.0 20.6 199 4-208 2-211 (217)
41 3uq3_A Heat shock protein STI1 99.8 2.6E-16 8.8E-21 131.7 24.5 228 5-246 3-236 (258)
42 4e6h_A MRNA 3'-END-processing 99.8 1.4E-13 4.9E-18 128.5 43.8 425 3-433 62-584 (679)
43 3u4t_A TPR repeat-containing p 99.8 7.9E-16 2.7E-20 129.9 25.7 244 184-434 5-266 (272)
44 2h6f_A Protein farnesyltransfe 99.8 7.4E-16 2.5E-20 134.9 26.1 252 3-262 93-363 (382)
45 3spa_A Mtrpol, DNA-directed RN 99.8 1.6E-18 5.6E-23 162.0 9.7 149 8-161 128-286 (1134)
46 1ouv_A Conserved hypothetical 99.7 8.4E-15 2.9E-19 123.6 31.2 223 181-418 5-252 (273)
47 3u4t_A TPR repeat-containing p 99.7 9.2E-16 3.2E-20 129.5 24.6 237 6-246 2-250 (272)
48 1ouv_A Conserved hypothetical 99.7 1.8E-14 6E-19 121.6 31.7 226 4-247 3-252 (273)
49 3spa_A Mtrpol, DNA-directed RN 99.7 3.3E-18 1.1E-22 160.0 9.3 150 42-196 127-286 (1134)
50 2h6f_A Protein farnesyltransfe 99.7 2.7E-15 9.3E-20 131.3 24.2 228 219-452 99-348 (382)
51 2vq2_A PILW, putative fimbrial 99.7 1.3E-14 4.5E-19 118.5 26.9 205 3-210 4-210 (225)
52 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.5E-15 5.1E-20 128.4 21.7 241 196-446 19-269 (275)
53 2ho1_A Type 4 fimbrial biogene 99.7 6.8E-15 2.3E-19 122.6 25.3 202 42-247 37-239 (252)
54 2ho1_A Type 4 fimbrial biogene 99.7 8.3E-15 2.8E-19 122.1 25.2 198 217-417 37-238 (252)
55 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.9E-15 6.5E-20 127.7 21.2 245 161-411 19-269 (275)
56 2q7f_A YRRB protein; TPR, prot 99.7 1.4E-15 4.8E-20 126.0 19.8 200 6-210 22-221 (243)
57 2vq2_A PILW, putative fimbrial 99.7 1.1E-14 3.8E-19 118.9 24.7 196 255-452 11-211 (225)
58 2q7f_A YRRB protein; TPR, prot 99.7 2.2E-15 7.5E-20 124.8 20.5 209 216-429 22-233 (243)
59 3sf4_A G-protein-signaling mod 99.7 4.6E-15 1.6E-19 133.0 21.9 298 76-404 8-363 (406)
60 4a1s_A PINS, partner of inscut 99.7 3E-15 1E-19 134.5 20.3 269 148-417 49-372 (411)
61 3sf4_A G-protein-signaling mod 99.7 9.6E-15 3.3E-19 130.9 22.3 298 144-442 6-366 (406)
62 4a1s_A PINS, partner of inscut 99.7 9.9E-15 3.4E-19 131.1 21.4 274 112-386 48-372 (411)
63 3ro2_A PINS homolog, G-protein 99.7 1.7E-14 5.7E-19 125.7 21.6 271 150-452 8-332 (338)
64 3vtx_A MAMA; tetratricopeptide 99.7 2.8E-14 9.5E-19 112.5 20.7 164 251-417 4-170 (184)
65 2ond_A Cleavage stimulation fa 99.7 2.9E-13 9.9E-18 116.1 28.4 215 199-417 33-270 (308)
66 3ulq_A Response regulator aspa 99.6 1.7E-13 5.7E-18 121.7 27.4 229 188-416 109-367 (383)
67 3ro2_A PINS homolog, G-protein 99.6 3.4E-14 1.2E-18 123.7 21.8 275 112-417 5-332 (338)
68 3vtx_A MAMA; tetratricopeptide 99.6 1E-13 3.5E-18 109.2 22.3 167 6-176 4-170 (184)
69 2ond_A Cleavage stimulation fa 99.6 6.1E-13 2.1E-17 114.1 27.7 238 5-246 6-270 (308)
70 4abn_A Tetratricopeptide repea 99.6 1.6E-14 5.5E-19 131.4 17.8 189 216-409 101-313 (474)
71 3ulq_A Response regulator aspa 99.6 2.4E-13 8.4E-18 120.7 24.8 231 153-385 109-367 (383)
72 3nf1_A KLC 1, kinesin light ch 99.6 3.8E-14 1.3E-18 122.1 16.7 242 182-453 27-308 (311)
73 3q15_A PSP28, response regulat 99.6 4.6E-12 1.6E-16 112.1 28.4 226 189-415 108-363 (378)
74 4abn_A Tetratricopeptide repea 99.6 3.7E-13 1.3E-17 122.4 20.6 194 147-345 102-315 (474)
75 3nf1_A KLC 1, kinesin light ch 99.6 3E-13 1E-17 116.3 18.9 242 4-246 24-307 (311)
76 1hz4_A MALT regulatory protein 99.5 2.1E-11 7.1E-16 107.8 30.0 297 150-454 17-351 (373)
77 3q15_A PSP28, response regulat 99.5 7.8E-12 2.7E-16 110.7 26.1 311 5-350 8-364 (378)
78 3as5_A MAMA; tetratricopeptide 99.5 1.9E-12 6.5E-17 102.0 19.0 160 290-452 11-173 (186)
79 4gyw_A UDP-N-acetylglucosamine 99.5 1.3E-12 4.5E-17 123.6 20.8 168 4-175 6-173 (723)
80 4gyw_A UDP-N-acetylglucosamine 99.5 1.3E-12 4.5E-17 123.6 20.6 162 252-416 9-173 (723)
81 1hz4_A MALT regulatory protein 99.5 2.7E-11 9.2E-16 107.1 27.9 202 9-210 16-243 (373)
82 4i17_A Hypothetical protein; T 99.5 7.6E-12 2.6E-16 102.2 21.4 208 4-223 4-220 (228)
83 3as5_A MAMA; tetratricopeptide 99.5 4.3E-12 1.5E-16 99.9 19.2 165 7-175 8-172 (186)
84 4i17_A Hypothetical protein; T 99.5 1.7E-11 5.8E-16 100.1 22.8 206 215-431 5-222 (228)
85 2uy1_A Cleavage stimulation fa 99.4 7.7E-10 2.6E-14 100.5 30.6 204 199-416 196-412 (493)
86 3edt_B KLC 2, kinesin light ch 99.4 7.5E-12 2.6E-16 105.9 16.0 224 228-452 12-281 (283)
87 3mv2_B Coatomer subunit epsilo 99.4 1.8E-10 6.1E-15 95.7 22.2 241 154-418 20-283 (310)
88 3edt_B KLC 2, kinesin light ch 99.4 1.1E-11 3.7E-16 104.9 14.8 228 18-246 12-281 (283)
89 1qqe_A Vesicular transport pro 99.4 2.6E-10 8.9E-15 96.8 22.4 163 253-415 78-267 (292)
90 1qqe_A Vesicular transport pro 99.3 2.7E-10 9.3E-15 96.6 21.6 203 156-390 46-273 (292)
91 3mv2_B Coatomer subunit epsilo 99.3 1.6E-09 5.5E-14 90.0 24.9 243 120-386 21-282 (310)
92 2uy1_A Cleavage stimulation fa 99.3 5.5E-09 1.9E-13 95.0 29.8 376 19-451 6-412 (493)
93 3qky_A Outer membrane assembly 99.3 2E-10 6.8E-15 95.9 18.8 104 3-107 11-127 (261)
94 3qky_A Outer membrane assembly 99.3 1.6E-10 5.4E-15 96.5 18.1 190 249-454 12-226 (261)
95 2fo7_A Synthetic consensus TPR 99.3 3.2E-10 1.1E-14 83.8 16.8 126 327-454 6-134 (136)
96 2yhc_A BAMD, UPF0169 lipoprote 99.3 5.9E-10 2E-14 90.6 19.5 189 252-455 4-216 (225)
97 2pzi_A Probable serine/threoni 99.3 1.2E-10 4.1E-15 110.8 16.8 171 18-194 402-580 (681)
98 3urz_A Uncharacterized protein 99.3 4.1E-10 1.4E-14 90.2 17.5 190 6-221 3-194 (208)
99 3urz_A Uncharacterized protein 99.3 5.9E-10 2E-14 89.3 18.4 134 292-429 59-196 (208)
100 4ga2_A E3 SUMO-protein ligase 99.3 4E-11 1.4E-15 90.4 10.3 143 293-438 3-149 (150)
101 2fo7_A Synthetic consensus TPR 99.2 7.9E-10 2.7E-14 81.6 16.9 131 8-141 2-132 (136)
102 3dra_A Protein farnesyltransfe 99.2 1.2E-08 4.2E-13 85.7 25.4 214 198-416 49-286 (306)
103 2pzi_A Probable serine/threoni 99.2 4E-10 1.4E-14 107.3 18.0 171 228-403 402-583 (681)
104 3rjv_A Putative SEL1 repeat pr 99.2 4.4E-09 1.5E-13 84.4 21.4 157 286-451 17-196 (212)
105 2r5s_A Uncharacterized protein 99.2 2.6E-10 8.8E-15 88.8 13.5 164 8-175 7-172 (176)
106 3qou_A Protein YBBN; thioredox 99.2 6.4E-10 2.2E-14 94.0 16.9 165 41-209 116-282 (287)
107 4ga2_A E3 SUMO-protein ligase 99.2 1.4E-10 4.8E-15 87.4 11.3 146 13-162 3-149 (150)
108 3dra_A Protein farnesyltransfe 99.2 1.3E-07 4.3E-12 79.5 29.1 217 164-385 50-286 (306)
109 3rjv_A Putative SEL1 repeat pr 99.2 4.5E-09 1.5E-13 84.4 19.7 176 25-212 4-198 (212)
110 2yhc_A BAMD, UPF0169 lipoprote 99.2 4.4E-09 1.5E-13 85.4 19.6 187 6-213 3-215 (225)
111 2vsy_A XCC0866; transferase, g 99.2 9.3E-10 3.2E-14 102.9 17.5 161 265-429 2-168 (568)
112 3qou_A Protein YBBN; thioredox 99.2 1.7E-09 5.9E-14 91.3 16.9 157 254-414 119-281 (287)
113 2r5s_A Uncharacterized protein 99.1 1.2E-09 4.2E-14 84.9 14.0 57 258-315 12-68 (176)
114 2ifu_A Gamma-SNAP; membrane fu 99.1 2E-09 6.9E-14 92.0 15.9 159 225-384 44-222 (307)
115 2vsy_A XCC0866; transferase, g 99.1 3.3E-09 1.1E-13 99.2 18.4 153 230-386 2-157 (568)
116 2ifu_A Gamma-SNAP; membrane fu 99.1 1.8E-09 6.2E-14 92.3 14.5 221 195-444 4-253 (307)
117 4gco_A Protein STI-1; structur 99.1 4.8E-09 1.6E-13 76.2 13.9 104 2-107 8-111 (126)
118 3u3w_A Transcriptional activat 99.0 1E-07 3.4E-12 80.9 22.4 159 293-451 81-265 (293)
119 3gyz_A Chaperone protein IPGC; 99.0 2.2E-09 7.6E-14 80.3 10.5 97 321-418 35-134 (151)
120 4gco_A Protein STI-1; structur 99.0 1.2E-08 4E-13 74.1 14.1 107 323-431 14-123 (126)
121 1hh8_A P67PHOX, NCF-2, neutrop 99.0 3.2E-08 1.1E-12 79.6 18.0 126 255-386 9-150 (213)
122 3u3w_A Transcriptional activat 99.0 1.6E-07 5.4E-12 79.7 22.8 159 258-416 81-265 (293)
123 2qfc_A PLCR protein; TPR, HTH, 99.0 8.6E-08 2.9E-12 81.3 20.9 90 359-448 157-262 (293)
124 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1.7E-08 5.9E-13 81.1 15.6 127 287-418 6-151 (213)
125 3q7a_A Farnesyltransferase alp 99.0 3.2E-07 1.1E-11 77.9 23.5 214 233-450 70-329 (349)
126 4f3v_A ESX-1 secretion system 99.0 1.5E-08 5E-13 83.1 14.6 185 229-417 18-237 (282)
127 3q7a_A Farnesyltransferase alp 99.0 6.5E-07 2.2E-11 76.0 24.9 184 9-197 56-257 (349)
128 1a17_A Serine/threonine protei 99.0 2.5E-08 8.6E-13 76.5 15.2 95 288-384 14-108 (166)
129 2vgx_A Chaperone SYCD; alterna 99.0 2.5E-09 8.5E-14 80.2 9.0 109 308-418 8-119 (148)
130 2qfc_A PLCR protein; TPR, HTH, 99.0 1E-06 3.6E-11 74.6 26.0 163 254-416 77-265 (293)
131 2c2l_A CHIP, carboxy terminus 98.9 2.8E-09 9.4E-14 89.7 9.5 192 216-416 3-198 (281)
132 2c2l_A CHIP, carboxy terminus 98.9 4.8E-09 1.7E-13 88.2 10.7 196 4-210 1-198 (281)
133 3gyz_A Chaperone protein IPGC; 98.9 1.4E-08 4.8E-13 75.9 11.6 99 41-141 35-133 (151)
134 2e2e_A Formate-dependent nitri 98.9 1.6E-08 5.3E-13 78.7 12.2 121 297-419 20-146 (177)
135 1na0_A Designed protein CTPR3; 98.9 8.8E-08 3E-12 69.2 15.3 113 7-122 9-121 (125)
136 1a17_A Serine/threonine protei 98.9 7.6E-08 2.6E-12 73.8 15.7 129 7-138 13-143 (166)
137 2lni_A Stress-induced-phosphop 98.9 5.7E-08 1.9E-12 71.3 14.0 118 4-124 13-130 (133)
138 3gw4_A Uncharacterized protein 98.9 4.3E-08 1.5E-12 78.1 14.1 151 265-416 5-175 (203)
139 2vyi_A SGTA protein; chaperone 98.9 7E-08 2.4E-12 70.4 14.2 122 4-128 9-130 (131)
140 3gw4_A Uncharacterized protein 98.9 4.2E-08 1.4E-12 78.1 13.8 154 298-452 3-176 (203)
141 2lni_A Stress-induced-phosphop 98.9 4.9E-08 1.7E-12 71.6 13.1 114 322-437 16-132 (133)
142 2e2e_A Formate-dependent nitri 98.9 5.5E-08 1.9E-12 75.5 13.9 122 262-386 20-144 (177)
143 2vyi_A SGTA protein; chaperone 98.9 6.8E-08 2.3E-12 70.5 13.5 115 323-439 13-130 (131)
144 1na0_A Designed protein CTPR3; 98.9 1.1E-07 3.7E-12 68.7 14.5 110 323-434 10-122 (125)
145 4f3v_A ESX-1 secretion system 98.9 3.4E-07 1.2E-11 75.1 18.4 187 19-211 18-237 (282)
146 2xcb_A PCRH, regulatory protei 98.9 1.3E-08 4.5E-13 75.8 9.3 97 321-418 17-116 (142)
147 1p5q_A FKBP52, FK506-binding p 98.8 7.5E-08 2.6E-12 83.2 14.5 148 266-415 127-292 (336)
148 3dss_A Geranylgeranyl transfer 98.8 8.1E-06 2.8E-10 69.0 25.7 135 194-332 41-189 (331)
149 2vgx_A Chaperone SYCD; alterna 98.8 4.6E-08 1.6E-12 73.3 10.9 111 273-386 8-118 (148)
150 3upv_A Heat shock protein STI1 98.8 2.2E-07 7.4E-12 67.4 14.0 100 5-106 2-101 (126)
151 1p5q_A FKBP52, FK506-binding p 98.8 1.3E-07 4.6E-12 81.6 14.9 130 43-174 148-292 (336)
152 4gcn_A Protein STI-1; structur 98.8 2.2E-07 7.6E-12 67.4 13.8 103 324-429 10-122 (127)
153 3upv_A Heat shock protein STI1 98.8 6.7E-08 2.3E-12 70.2 11.0 96 322-418 4-102 (126)
154 2kck_A TPR repeat; tetratricop 98.8 1.5E-07 5.2E-12 66.5 12.2 103 3-107 2-107 (112)
155 3sz7_A HSC70 cochaperone (SGT) 98.8 1E-07 3.5E-12 73.0 11.7 98 321-419 10-110 (164)
156 2xcb_A PCRH, regulatory protei 98.8 1.1E-07 3.9E-12 70.6 11.6 101 4-106 15-115 (142)
157 1hxi_A PEX5, peroxisome target 98.7 6.9E-08 2.3E-12 69.4 9.8 90 326-416 21-113 (121)
158 2fbn_A 70 kDa peptidylprolyl i 98.7 1.5E-08 5E-13 80.5 6.5 85 358-443 89-176 (198)
159 1elw_A TPR1-domain of HOP; HOP 98.7 5.2E-07 1.8E-11 64.3 14.1 93 324-417 6-101 (118)
160 2fbn_A 70 kDa peptidylprolyl i 98.7 2.1E-08 7.3E-13 79.5 7.1 167 13-202 10-176 (198)
161 1elw_A TPR1-domain of HOP; HOP 98.7 1.1E-06 3.7E-11 62.6 15.2 100 6-107 3-102 (118)
162 2kck_A TPR repeat; tetratricop 98.7 2.1E-07 7.2E-12 65.7 10.9 97 358-455 7-109 (112)
163 3q49_B STIP1 homology and U bo 98.7 3.8E-07 1.3E-11 67.3 12.3 98 320-418 7-107 (137)
164 4gcn_A Protein STI-1; structur 98.7 4.2E-07 1.4E-11 65.9 12.2 99 7-106 8-112 (127)
165 4b4t_Q 26S proteasome regulato 98.7 1.9E-06 6.3E-11 77.7 19.0 193 224-416 11-244 (434)
166 3dss_A Geranylgeranyl transfer 98.7 6E-05 2.1E-09 63.7 26.7 197 93-295 90-317 (331)
167 3sz7_A HSC70 cochaperone (SGT) 98.6 9.4E-07 3.2E-11 67.5 14.0 102 4-107 8-109 (164)
168 1elr_A TPR2A-domain of HOP; HO 98.6 6.2E-07 2.1E-11 65.3 12.4 108 323-433 5-122 (131)
169 3q49_B STIP1 homology and U bo 98.6 9.8E-07 3.4E-11 65.0 13.4 102 3-106 5-106 (137)
170 2dba_A Smooth muscle cell asso 98.6 1.9E-06 6.5E-11 64.3 14.9 109 321-432 27-142 (148)
171 1elr_A TPR2A-domain of HOP; HO 98.6 4.8E-07 1.6E-11 65.9 11.2 112 6-120 3-120 (131)
172 2dba_A Smooth muscle cell asso 98.6 2.1E-06 7.3E-11 64.0 14.2 101 4-106 25-128 (148)
173 2hr2_A Hypothetical protein; a 98.6 4.3E-07 1.5E-11 67.1 9.6 29 323-351 12-40 (159)
174 1hxi_A PEX5, peroxisome target 98.6 5.8E-07 2E-11 64.5 10.0 94 360-454 20-116 (121)
175 4b4t_Q 26S proteasome regulato 98.6 4E-06 1.4E-10 75.5 17.7 198 189-386 11-245 (434)
176 3ro3_A PINS homolog, G-protein 98.5 1.1E-06 3.9E-11 66.7 12.1 61 289-349 11-76 (164)
177 2xev_A YBGF; tetratricopeptide 98.5 1.2E-06 4.1E-11 63.7 11.2 93 325-418 5-106 (129)
178 3ro3_A PINS homolog, G-protein 98.5 9.3E-07 3.2E-11 67.2 11.0 131 322-452 9-158 (164)
179 3rkv_A Putative peptidylprolyl 98.5 1.7E-06 5.8E-11 65.9 11.3 99 321-419 10-128 (162)
180 2xev_A YBGF; tetratricopeptide 98.5 4.9E-06 1.7E-10 60.4 13.2 94 291-386 6-105 (129)
181 1dce_A Protein (RAB geranylger 98.5 1.9E-05 6.5E-10 73.0 19.9 171 267-441 44-244 (567)
182 1ihg_A Cyclophilin 40; ppiase 98.5 1.8E-06 6.3E-11 75.4 12.4 137 287-444 223-362 (370)
183 1wao_1 Serine/threonine protei 98.4 5.1E-07 1.7E-11 81.9 8.8 116 296-413 15-135 (477)
184 1wao_1 Serine/threonine protei 98.4 2.8E-06 9.6E-11 77.1 13.6 120 224-346 13-134 (477)
185 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 2.4E-06 8.1E-11 77.2 13.1 149 266-416 248-414 (457)
186 3k9i_A BH0479 protein; putativ 98.4 4.5E-07 1.5E-11 64.7 6.4 83 335-417 3-90 (117)
187 2if4_A ATFKBP42; FKBP-like, al 98.4 5.9E-07 2E-11 77.6 8.2 148 286-453 178-329 (338)
188 3k9i_A BH0479 protein; putativ 98.4 9.5E-07 3.2E-11 63.0 7.7 86 369-455 2-93 (117)
189 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 3.7E-06 1.3E-10 76.0 13.1 129 44-174 270-413 (457)
190 3rkv_A Putative peptidylprolyl 98.4 1.8E-06 6.2E-11 65.7 9.3 103 286-389 10-129 (162)
191 1klx_A Cysteine rich protein B 98.3 1.3E-05 4.5E-10 58.8 12.9 110 301-418 9-127 (138)
192 2if4_A ATFKBP42; FKBP-like, al 98.3 3.7E-06 1.3E-10 72.6 10.4 147 252-418 179-329 (338)
193 1ihg_A Cyclophilin 40; ppiase 98.3 8.6E-06 3E-10 71.1 12.7 138 8-167 224-361 (370)
194 1dce_A Protein (RAB geranylger 98.3 7.4E-05 2.5E-09 69.1 18.9 170 233-406 45-244 (567)
195 1klx_A Cysteine rich protein B 98.3 2.1E-05 7.3E-10 57.7 12.4 108 337-452 10-126 (138)
196 2hr2_A Hypothetical protein; a 98.2 2.3E-05 7.8E-10 57.9 12.0 64 7-70 11-85 (159)
197 3n71_A Histone lysine methyltr 98.2 7.1E-06 2.4E-10 74.0 10.9 88 297-384 319-420 (490)
198 2l6j_A TPR repeat-containing p 98.2 1.2E-06 4.2E-11 61.6 3.6 89 357-446 4-101 (111)
199 3n71_A Histone lysine methyltr 98.1 2.1E-05 7.3E-10 70.9 11.9 119 333-451 320-463 (490)
200 2l6j_A TPR repeat-containing p 98.1 4E-06 1.4E-10 58.9 5.4 92 5-99 2-100 (111)
201 1na3_A Designed protein CTPR2; 98.1 4.4E-05 1.5E-09 51.1 10.3 81 6-88 8-88 (91)
202 2kat_A Uncharacterized protein 98.1 1.7E-05 5.8E-10 56.1 8.4 76 341-417 4-82 (115)
203 2kat_A Uncharacterized protein 98.0 2.1E-05 7.2E-10 55.6 8.1 78 375-453 3-83 (115)
204 1na3_A Designed protein CTPR2; 98.0 3.8E-05 1.3E-09 51.4 9.0 79 357-436 9-90 (91)
205 1zu2_A Mitochondrial import re 98.0 9.9E-06 3.4E-10 59.7 5.4 86 332-418 12-121 (158)
206 3ma5_A Tetratricopeptide repea 97.9 6E-05 2.1E-09 51.6 8.7 69 2-71 2-70 (100)
207 1zu2_A Mitochondrial import re 97.9 5.1E-05 1.7E-09 55.9 8.5 98 17-118 12-130 (158)
208 3ma5_A Tetratricopeptide repea 97.9 6E-05 2E-09 51.6 8.4 82 354-435 4-89 (100)
209 3ly7_A Transcriptional activat 97.7 0.001 3.4E-08 56.6 13.5 64 354-417 274-339 (372)
210 3ly7_A Transcriptional activat 97.7 0.0021 7E-08 54.8 15.2 143 38-186 190-347 (372)
211 2kc7_A BFR218_protein; tetratr 97.7 7.6E-05 2.6E-09 51.0 5.6 52 366-417 9-64 (99)
212 3bee_A Putative YFRE protein; 97.5 0.00075 2.6E-08 45.1 8.7 69 3-72 2-73 (93)
213 3qww_A SET and MYND domain-con 97.5 0.00032 1.1E-08 62.2 8.1 82 335-416 311-410 (433)
214 3bee_A Putative YFRE protein; 97.4 0.0011 3.7E-08 44.3 8.6 66 354-419 3-74 (93)
215 3qwp_A SET and MYND domain-con 97.4 0.0009 3.1E-08 59.4 10.0 86 331-416 296-399 (429)
216 2kc7_A BFR218_protein; tetratr 97.4 0.00073 2.5E-08 45.9 7.6 62 393-455 5-67 (99)
217 3lvg_A Clathrin heavy chain 1; 97.4 3.5E-06 1.2E-10 72.9 -5.1 245 6-272 53-324 (624)
218 3mkq_A Coatomer beta'-subunit; 97.3 0.038 1.3E-06 54.0 22.1 187 192-440 609-800 (814)
219 3qww_A SET and MYND domain-con 97.3 0.00064 2.2E-08 60.3 8.6 83 369-451 310-410 (433)
220 3qwp_A SET and MYND domain-con 97.3 0.0019 6.5E-08 57.3 10.9 88 364-451 294-399 (429)
221 1pc2_A Mitochondria fission pr 97.3 0.0012 4.1E-08 48.1 7.7 82 337-419 13-102 (152)
222 2v5f_A Prolyl 4-hydroxylase su 97.3 0.0018 6.1E-08 44.5 8.4 63 356-418 4-76 (104)
223 3u64_A Protein TP_0956; tetrat 97.2 0.045 1.5E-06 44.7 16.9 103 339-451 180-297 (301)
224 4h7y_A Dual specificity protei 97.1 0.0076 2.6E-07 43.3 10.5 106 2-109 8-126 (161)
225 2v5f_A Prolyl 4-hydroxylase su 96.9 0.011 3.7E-07 40.5 9.8 67 5-71 3-75 (104)
226 3mkq_A Coatomer beta'-subunit; 96.7 0.12 4E-06 50.5 18.8 154 15-207 607-761 (814)
227 1pc2_A Mitochondria fission pr 96.6 0.036 1.2E-06 40.4 10.4 79 271-351 17-100 (152)
228 3mkq_B Coatomer subunit alpha; 96.5 0.092 3.2E-06 39.3 12.8 26 77-102 34-59 (177)
229 4h7y_A Dual specificity protei 96.5 0.13 4.4E-06 37.1 12.9 111 216-329 12-135 (161)
230 3u64_A Protein TP_0956; tetrat 96.5 0.032 1.1E-06 45.6 10.8 88 22-109 178-272 (301)
231 1nzn_A CGI-135 protein, fissio 96.5 0.014 4.7E-07 40.9 7.5 90 329-419 8-105 (126)
232 4ady_A RPN2, 26S proteasome re 96.4 0.81 2.8E-05 44.5 34.1 21 14-34 237-257 (963)
233 1wy6_A Hypothetical protein ST 96.1 0.22 7.5E-06 35.1 15.1 146 290-453 8-155 (172)
234 3mkq_B Coatomer subunit alpha; 96.0 0.32 1.1E-05 36.4 16.8 100 157-277 15-114 (177)
235 1nzn_A CGI-135 protein, fissio 95.9 0.22 7.4E-06 34.9 11.2 85 300-386 14-103 (126)
236 3lvg_A Clathrin heavy chain 1; 95.8 9.6E-06 3.3E-10 70.3 -13.2 261 111-408 53-324 (624)
237 4ady_A RPN2, 26S proteasome re 95.4 2.2 7.5E-05 41.6 30.2 150 297-451 500-657 (963)
238 1wy6_A Hypothetical protein ST 95.3 0.46 1.6E-05 33.5 14.8 63 255-318 94-156 (172)
239 1qsa_A Protein (soluble lytic 95.2 2 6.9E-05 40.0 25.4 113 301-416 228-347 (618)
240 3ffl_A Anaphase-promoting comp 95.1 0.4 1.4E-05 35.3 10.5 42 356-397 121-164 (167)
241 1y8m_A FIS1; mitochondria, unk 94.8 0.28 9.6E-06 35.0 8.8 65 354-418 36-107 (144)
242 4gns_B Protein CSD3, chitin bi 94.6 0.37 1.3E-05 45.7 11.9 49 321-371 612-660 (754)
243 4b4t_P 26S proteasome regulato 94.6 2.4 8.2E-05 37.8 18.4 240 195-435 29-305 (445)
244 3o48_A Mitochondria fission 1 94.5 0.22 7.4E-06 35.1 7.5 65 354-418 37-108 (134)
245 2ff4_A Probable regulatory pro 94.2 0.58 2E-05 40.8 11.6 114 320-433 110-255 (388)
246 2ff4_A Probable regulatory pro 94.1 0.95 3.3E-05 39.5 12.9 68 46-114 175-247 (388)
247 3ffl_A Anaphase-promoting comp 94.0 0.56 1.9E-05 34.5 9.2 115 324-451 22-150 (167)
248 4gns_B Protein CSD3, chitin bi 93.8 0.8 2.7E-05 43.5 12.4 53 331-384 346-398 (754)
249 4fhn_B Nucleoporin NUP120; pro 93.2 5 0.00017 40.9 17.9 186 223-415 818-1048(1139)
250 4fhn_B Nucleoporin NUP120; pro 93.1 2.9 9.9E-05 42.6 16.0 132 112-245 899-1049(1139)
251 1v54_E Cytochrome C oxidase po 93.0 0.95 3.2E-05 29.9 7.9 60 269-329 27-86 (109)
252 1v54_E Cytochrome C oxidase po 92.5 1.2 4E-05 29.5 7.8 49 404-452 26-74 (109)
253 4b4t_P 26S proteasome regulato 91.7 6.8 0.00023 34.9 22.5 254 160-414 29-321 (445)
254 3txn_A 26S proteasome regulato 91.0 7.3 0.00025 33.8 22.2 167 182-349 19-208 (394)
255 3o48_A Mitochondria fission 1 90.6 3.3 0.00011 29.2 10.9 69 283-351 36-107 (134)
256 2y69_E Cytochrome C oxidase su 90.5 3.3 0.00011 29.2 8.8 61 269-330 70-130 (152)
257 2y69_E Cytochrome C oxidase su 88.4 5.1 0.00017 28.2 9.0 61 304-365 70-130 (152)
258 1zbp_A Hypothetical protein VP 88.1 1.9 6.6E-05 34.7 7.4 114 14-140 4-128 (273)
259 1qsa_A Protein (soluble lytic 88.0 17 0.00058 33.9 33.6 310 17-350 16-347 (618)
260 2wpv_A GET4, UPF0363 protein Y 86.5 13 0.00045 31.0 18.7 112 44-170 35-157 (312)
261 4b4t_R RPN7, 26S proteasome re 85.7 5.8 0.0002 35.1 10.1 98 288-385 132-236 (429)
262 2wpv_A GET4, UPF0363 protein Y 85.7 15 0.0005 30.7 21.6 45 356-400 133-177 (312)
263 1zbp_A Hypothetical protein VP 85.0 4.2 0.00014 32.8 7.8 52 228-280 8-59 (273)
264 3txn_A 26S proteasome regulato 84.9 19 0.00064 31.3 21.6 294 147-453 19-344 (394)
265 4b4t_R RPN7, 26S proteasome re 83.9 16 0.00053 32.4 12.0 61 254-314 133-195 (429)
266 4b4t_S RPN3, 26S proteasome re 83.3 26 0.00088 31.6 13.7 65 77-141 231-299 (523)
267 3lpz_A GET4 (YOR164C homolog); 81.9 22 0.00076 29.9 22.1 46 285-334 134-179 (336)
268 1y8m_A FIS1; mitochondria, unk 80.7 13 0.00045 26.6 12.5 67 285-351 37-106 (144)
269 3lpz_A GET4 (YOR164C homolog); 78.3 29 0.001 29.2 22.6 25 356-380 135-159 (336)
270 2uwj_G Type III export protein 76.2 14 0.00048 24.4 7.8 49 122-176 49-97 (115)
271 2p58_C Putative type III secre 75.2 15 0.00052 24.3 8.5 49 122-176 50-98 (116)
272 3esl_A Checkpoint serine/threo 75.1 26 0.00088 26.9 9.3 53 93-145 95-148 (202)
273 1wdy_A 2-5A-dependent ribonucl 70.9 23 0.0008 28.6 8.9 13 16-28 11-23 (285)
274 3kae_A CDC27, possible protein 69.6 32 0.0011 25.5 10.1 80 368-449 44-140 (242)
275 2uwj_G Type III export protein 66.3 25 0.00087 23.2 8.7 87 55-150 19-105 (115)
276 4gq2_M Nucleoporin NUP120; bet 65.8 77 0.0026 31.6 12.5 85 328-417 816-926 (950)
277 2p58_C Putative type III secre 65.0 27 0.00094 23.1 9.6 87 55-150 20-106 (116)
278 3esl_A Checkpoint serine/threo 64.8 45 0.0015 25.6 10.4 49 338-386 95-144 (202)
279 3ltm_A Alpha-REP4; protein eng 59.8 56 0.0019 25.0 19.3 184 25-231 19-202 (211)
280 3eiq_C Programmed cell death p 59.2 84 0.0029 26.8 13.0 24 10-33 57-80 (358)
281 3bu8_A Telomeric repeat-bindin 59.0 50 0.0017 25.5 7.4 23 84-106 121-143 (235)
282 2d2s_A Exocyst complex compone 58.4 67 0.0023 25.4 9.5 24 12-35 23-46 (235)
283 2d2s_A Exocyst complex compone 58.2 68 0.0023 25.4 9.3 29 355-383 89-117 (235)
284 4a1g_A Mitotic checkpoint seri 57.8 51 0.0018 23.9 9.3 54 94-147 82-136 (152)
285 2ion_A PDCD4, programmed cell 56.0 48 0.0016 24.1 6.9 65 9-74 11-77 (152)
286 1k1a_A B-cell lymphoma 3-encod 54.6 63 0.0021 25.2 8.4 20 53-72 17-36 (241)
287 2ijq_A Hypothetical protein; s 54.5 61 0.0021 23.8 7.6 49 402-450 46-102 (161)
288 3ltj_A Alpharep-4; protein eng 54.3 68 0.0023 24.2 19.9 170 40-229 26-195 (201)
289 3eiq_C Programmed cell death p 52.5 1.1E+02 0.0038 26.1 14.2 73 290-363 220-294 (358)
290 4ets_A Ferric uptake regulatio 51.1 48 0.0016 24.4 6.4 25 47-71 37-61 (162)
291 3ltm_A Alpha-REP4; protein eng 50.8 80 0.0027 24.0 20.2 17 111-127 32-48 (211)
292 2wvi_A Mitotic checkpoint seri 50.5 73 0.0025 23.5 9.0 52 95-146 78-130 (164)
293 3jxi_A Vanilloid receptor-rela 50.2 21 0.00073 28.5 4.9 19 54-72 14-32 (260)
294 3jxi_A Vanilloid receptor-rela 49.9 12 0.00039 30.1 3.2 57 14-70 9-74 (260)
295 2ion_A PDCD4, programmed cell 49.2 73 0.0025 23.1 7.2 24 291-314 13-36 (152)
296 1wdy_A 2-5A-dependent ribonucl 47.9 53 0.0018 26.4 7.1 13 369-381 228-240 (285)
297 2fe3_A Peroxide operon regulat 46.9 74 0.0025 22.7 6.8 33 404-436 37-69 (145)
298 4a1g_A Mitotic checkpoint seri 46.0 83 0.0028 22.8 9.7 47 306-352 84-131 (152)
299 4aez_C MAD3, mitotic spindle c 44.7 57 0.002 25.5 6.0 84 61-147 96-185 (223)
300 1wgl_A TOLL-interacting protei 44.6 31 0.0011 20.1 3.5 22 55-76 36-57 (59)
301 3bqo_A Telomeric repeat-bindin 43.7 34 0.0012 26.0 4.4 20 395-414 124-143 (211)
302 4ets_A Ferric uptake regulatio 43.1 85 0.0029 23.0 6.7 35 349-384 25-59 (162)
303 4b4t_S RPN3, 26S proteasome re 42.9 1.9E+02 0.0066 26.2 11.0 65 252-316 231-299 (523)
304 4aez_C MAD3, mitotic spindle c 42.4 82 0.0028 24.6 6.6 46 340-385 132-178 (223)
305 3hra_A Ankyrin repeat family p 42.1 58 0.002 24.4 6.1 16 16-31 11-26 (201)
306 2nsz_A Programmed cell death p 42.1 86 0.0029 21.9 8.6 24 291-314 11-34 (129)
307 1bpo_A Protein (clathrin); cla 41.6 1.9E+02 0.0065 25.7 11.0 137 300-449 342-482 (494)
308 1k1a_A B-cell lymphoma 3-encod 40.8 85 0.0029 24.3 7.1 85 14-102 13-101 (241)
309 4gq2_M Nucleoporin NUP120; bet 40.4 2.4E+02 0.0081 28.2 11.2 49 113-161 898-950 (950)
310 2o03_A Probable zinc uptake re 38.4 67 0.0023 22.4 5.3 45 394-438 16-60 (131)
311 2fe3_A Peroxide operon regulat 37.5 1.1E+02 0.0038 21.8 7.3 45 47-91 26-70 (145)
312 3eu9_A Huntingtin-interacting 37.0 66 0.0023 24.9 5.8 6 123-128 50-55 (240)
313 2qx5_A Nucleoporin NIC96; mRNA 36.9 2.8E+02 0.0094 26.2 21.7 16 399-414 549-564 (661)
314 3eu9_A Huntingtin-interacting 36.6 76 0.0026 24.5 6.1 16 16-31 15-30 (240)
315 2xig_A Ferric uptake regulatio 36.2 1.2E+02 0.0041 21.8 7.7 43 294-336 33-75 (150)
316 1mzb_A Ferric uptake regulatio 35.8 1.1E+02 0.0039 21.4 6.6 43 47-89 22-65 (136)
317 3kea_A K1L; tropism, ANK repea 35.7 75 0.0026 25.8 6.1 7 229-235 170-176 (285)
318 3mwm_A ZUR, putative metal upt 35.6 68 0.0023 22.8 5.0 45 394-438 19-63 (139)
319 2o03_A Probable zinc uptake re 35.2 42 0.0014 23.5 3.8 47 47-93 15-61 (131)
320 2xig_A Ferric uptake regulatio 35.1 1.2E+02 0.0043 21.7 7.9 44 47-90 31-74 (150)
321 3bu8_A Telomeric repeat-bindin 35.0 1.6E+02 0.0054 22.9 11.9 22 120-141 122-143 (235)
322 3eyy_A Putative iron uptake re 34.5 1.1E+02 0.0037 21.9 6.0 41 48-89 24-64 (145)
323 2w57_A Ferric uptake regulatio 34.3 1.3E+02 0.0044 21.6 7.0 45 47-91 21-66 (150)
324 3kea_A K1L; tropism, ANK repea 33.9 90 0.0031 25.3 6.3 144 49-208 35-184 (285)
325 1oyz_A Hypothetical protein YI 33.6 1.8E+02 0.0063 23.2 25.4 121 285-415 140-261 (280)
326 2wvi_A Mitotic checkpoint seri 33.4 1.4E+02 0.0049 21.9 9.1 55 129-183 77-132 (164)
327 2crb_A Nuclear receptor bindin 32.8 89 0.0031 20.2 4.4 28 7-34 15-42 (97)
328 2f6m_A Suppressor protein STP2 31.9 84 0.0029 18.8 4.9 47 8-55 3-49 (65)
329 3mwm_A ZUR, putative metal upt 31.2 99 0.0034 21.9 5.2 44 83-126 19-62 (139)
330 1mzb_A Ferric uptake regulatio 31.2 1.4E+02 0.0047 21.0 7.0 60 68-128 9-69 (136)
331 2w57_A Ferric uptake regulatio 30.9 1.5E+02 0.0051 21.3 6.9 62 67-129 7-69 (150)
332 1oyz_A Hypothetical protein YI 30.7 2.1E+02 0.0071 22.9 25.3 83 215-304 140-223 (280)
333 3ltj_A Alpharep-4; protein eng 30.6 1.7E+02 0.0058 21.9 21.3 171 76-266 27-197 (201)
334 2b7e_A PRE-mRNA processing pro 30.4 42 0.0014 19.6 2.5 29 24-52 3-31 (59)
335 3hra_A Ankyrin repeat family p 29.8 1.2E+02 0.0043 22.5 6.2 10 238-247 159-168 (201)
336 2br9_A 14-3-3E, 14-3-3 protein 29.5 1.9E+02 0.0063 22.9 6.8 32 396-427 13-44 (234)
337 2ijq_A Hypothetical protein; s 29.4 1.7E+02 0.0058 21.5 7.9 49 21-69 46-102 (161)
338 2fu4_A Ferric uptake regulatio 29.2 1E+02 0.0036 19.0 7.1 32 94-125 34-65 (83)
339 2ynq_A ESSB; membrane protein, 29.2 1.7E+02 0.0058 21.4 8.5 76 335-414 21-99 (161)
340 2rfa_A Transient receptor pote 29.0 1.9E+02 0.0066 22.1 7.5 50 14-67 7-59 (232)
341 3t8k_A Uncharacterized protein 29.0 1.8E+02 0.0061 21.7 8.9 91 17-111 13-108 (186)
342 2etb_A Transient receptor pote 28.0 1.1E+02 0.0038 24.0 5.8 18 89-106 11-28 (256)
343 1bpo_A Protein (clathrin); cla 27.5 3.3E+02 0.011 24.3 13.6 140 266-414 343-482 (494)
344 2cwy_A Hypothetical protein TT 27.2 1.3E+02 0.0044 19.6 4.7 46 369-416 13-67 (94)
345 3pvs_A Replication-associated 27.2 3.3E+02 0.011 24.1 13.8 56 194-249 267-327 (447)
346 3bqo_A Telomeric repeat-bindin 26.9 1.1E+02 0.0038 23.3 4.8 24 47-70 122-145 (211)
347 2qx5_A Nucleoporin NIC96; mRNA 26.2 4.2E+02 0.014 25.0 19.9 86 364-449 450-564 (661)
348 2nsz_A Programmed cell death p 26.1 1.7E+02 0.0057 20.4 9.1 25 325-349 10-34 (129)
349 2rg8_A Programmed cell death p 26.1 64 0.0022 23.8 3.5 25 10-34 13-37 (165)
350 3pvs_A Replication-associated 26.0 3.4E+02 0.012 24.0 13.8 56 124-179 267-327 (447)
351 2zu6_B Programmed cell death p 25.8 2.9E+02 0.0098 23.0 11.5 69 290-359 169-239 (307)
352 3aji_A 26S proteasome non-ATPa 25.7 2.2E+02 0.0076 21.7 8.2 19 14-32 10-28 (231)
353 3qil_A Clathrin heavy chain 1; 24.9 69 0.0024 22.1 3.1 51 80-133 35-85 (125)
354 3aji_A 26S proteasome non-ATPa 23.6 2.5E+02 0.0084 21.4 7.3 19 49-67 10-28 (231)
355 1ug3_A EIF4GI, eukaryotic prot 23.4 2.1E+02 0.0072 24.1 6.7 25 150-174 14-38 (339)
356 3uzd_A 14-3-3 protein gamma; s 23.2 2.9E+02 0.0098 22.1 7.0 57 394-450 10-67 (248)
357 2etb_A Transient receptor pote 22.5 1.5E+02 0.0052 23.3 5.6 27 14-40 6-32 (256)
358 2yru_A Steroid receptor RNA ac 22.4 1.6E+02 0.0054 20.2 4.6 42 64-105 48-89 (118)
359 1ug3_A EIF4GI, eukaryotic prot 22.1 3.6E+02 0.012 22.7 10.5 24 81-104 15-38 (339)
360 3iqu_A 14-3-3 protein sigma; s 21.9 3E+02 0.01 21.8 7.3 59 393-451 13-72 (236)
361 3ygs_P Procaspase 9; apoptosis 21.6 1.7E+02 0.0057 19.1 4.6 28 373-400 53-80 (97)
362 2zu6_B Programmed cell death p 21.6 3.5E+02 0.012 22.4 13.5 69 255-324 169-239 (307)
363 1o9d_A 14-3-3-like protein C; 21.3 2.9E+02 0.01 22.2 6.6 35 395-429 15-51 (260)
364 1zl8_A LIN-7; heterodimer, alp 20.5 1.2E+02 0.0042 16.8 4.9 19 21-39 7-25 (53)
365 2p22_A Suppressor protein STP2 20.4 2E+02 0.0068 21.4 5.1 44 44-88 113-156 (174)
366 1ixm_A SPO0B, protein (sporula 20.4 1.8E+02 0.0062 22.0 5.2 70 337-413 14-83 (192)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.2e-43 Score=330.61 Aligned_cols=440 Identities=13% Similarity=0.028 Sum_probs=387.9
Q ss_pred CCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHH
Q 012800 4 KLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSL 83 (456)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (456)
.+++..|+.++..|.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|..+|+.+... +++..+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 368889999999999999999999999999865 467788999999999999999999999988654 6789999999
Q ss_pred HHHHHcCCChhHHHHHHHHHHHC---------------CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 012800 84 IAGATRNSLLSCSLDLLDEMLEM---------------GIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTA 148 (456)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 148 (456)
+.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.++|+++...+ +.+..
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 235 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYE 235 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhH
Confidence 99999999999999999853322 223468899999999999999999999999998765 33444
Q ss_pred HHHHH--------------------------------------HHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 012800 149 TFNIM--------------------------------------LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIK 190 (456)
Q Consensus 149 ~~~~l--------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 190 (456)
.+..+ +..|.+.|++++|.++|+++.+. +++..+++.++.
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 313 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHH
Confidence 43333 44556788999999999998875 579999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHH
Q 012800 191 GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 270 (456)
Q Consensus 191 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (456)
.|.+.|++++|..+|+++...+.. +..++..++.++...|++++|..+++.+.+.. +.+..++..++..|.+.|++++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999876543 77889999999999999999999999999765 6778899999999999999999
Q ss_pred HHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012800 271 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 350 (456)
Q Consensus 271 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 350 (456)
|.++|+++.+... .+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|..+|+++.+
T Consensus 392 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999988643 378899999999999999999999999999864 34788999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC--------C--hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 012800 351 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--------D--SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 420 (456)
Q Consensus 351 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 420 (456)
.. +.+..+|..++..|.+.|++++|.++|+++... + ..+|..++.+|.+.|++++|.+.++++.+.+ +
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p 547 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T 547 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C
Confidence 74 667899999999999999999999999998653 2 5689999999999999999999999999886 3
Q ss_pred CCHHhHHHHHHHHHccCChHHHHHHHHHHHhcccCC
Q 012800 421 ILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 456 (456)
Q Consensus 421 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 456 (456)
.+..+|..++.+|.+.|++++|.++++++.+.++.+
T Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 548 NDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 488999999999999999999999999999877653
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.7e-39 Score=305.19 Aligned_cols=419 Identities=11% Similarity=0.009 Sum_probs=366.0
Q ss_pred CchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhC-------------
Q 012800 5 LSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREA------------- 71 (456)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------- 71 (456)
|+..++..++..|.+.|++++|+.+|+.+... +++..+++.++.+|.+.|++++|.++|+++...
T Consensus 115 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 192 (597)
T 2xpi_A 115 GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQ 192 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CC
T ss_pred CCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccccc
Confidence 57788999999999999999999999998653 578899999999999999999999999853221
Q ss_pred --CCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHH-------------------------------
Q 012800 72 --GISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSL------------------------------- 118 (456)
Q Consensus 72 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------------------------- 118 (456)
+.+++..+|+.++.+|.+.|++++|.++|+++.+.++. +...+..+
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 271 (597)
T 2xpi_A 193 DGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFL 271 (597)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHH
T ss_pred ccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHH
Confidence 22346889999999999999999999999999986533 33333333
Q ss_pred -------HHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 012800 119 -------MHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKG 191 (456)
Q Consensus 119 -------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 191 (456)
+..|.+.|++++|.++|+++... +++..+|+.++..+.+.|++++|+.+|+++.+.+ +.+..++..++.+
T Consensus 272 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 348 (597)
T 2xpi_A 272 RSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLAS 348 (597)
T ss_dssp HHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHH
Confidence 44556788999999999998865 6889999999999999999999999999998764 3477889999999
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHH
Q 012800 192 LCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 271 (456)
Q Consensus 192 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 271 (456)
+.+.|++++|..+++.+.... +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..++..++.++.+.|++++|
T Consensus 349 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 426 (597)
T 2xpi_A 349 LHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQA 426 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998653 3478899999999999999999999999999875 56788999999999999999999
Q ss_pred HHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012800 272 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 351 (456)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (456)
.++|+++.+.+. .+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|..+|+++.+.
T Consensus 427 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 427 ISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999998743 478899999999999999999999999999864 347889999999999999999999999999876
Q ss_pred ----CCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC
Q 012800 352 ----GFDSN--LEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 422 (456)
Q Consensus 352 ----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 422 (456)
+..|+ ..+|..++.+|.+.|++++|.+.|+++... +..+|..++.+|.+.|++++|.+.++++++..+. +
T Consensus 505 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~ 583 (597)
T 2xpi_A 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN-E 583 (597)
T ss_dssp HHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred hhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-C
Confidence 55777 789999999999999999999999998764 7889999999999999999999999999988644 6
Q ss_pred HHhHHHHHHHHH
Q 012800 423 KSAQKAVVDGLR 434 (456)
Q Consensus 423 ~~~~~~l~~~~~ 434 (456)
+..+..+..+|.
T Consensus 584 ~~~~~~l~~~~~ 595 (597)
T 2xpi_A 584 IMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHTTC
T ss_pred hHHHHHHHHHHh
Confidence 777777776654
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=4.1e-31 Score=236.21 Aligned_cols=380 Identities=12% Similarity=0.029 Sum_probs=235.0
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCC
Q 012800 13 CVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSL 92 (456)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 92 (456)
+...+.+.|++++|++.++.+.+..+. +...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 345677788888888888887776543 55667777777777888888888887777653 4466777777888888888
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 012800 93 LSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRG 172 (456)
Q Consensus 93 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 172 (456)
+++|.+.|+++.+..+ .+..+|..+..++.+.|++++|.+.|+++.+.+ +.+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 8888888887776532 245567777777777777777777777777654 44455566666677777777777777777
Q ss_pred HHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcCh
Q 012800 173 LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG 252 (456)
Q Consensus 173 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 252 (456)
+.+.. +.+..+|..+...+...|++++|...|+++...++. +...+..+...+...|++++|...+++..+.. +.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~-- 235 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PN-- 235 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TT--
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cC--
Confidence 66542 234556666666666666666666666665553221 33444444444444455555444444444432 22
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 012800 253 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 332 (456)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 332 (456)
+..++..+..+|...|++++|...++++.+.+. .+..++..+...+
T Consensus 236 ---------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 281 (388)
T 1w3b_A 236 ---------------------------------HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANAL 281 (388)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHH
T ss_pred ---------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHH
Confidence 344455555555555555555555555554321 1344555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHH
Q 012800 333 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASK 409 (456)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~ 409 (456)
.+.|++++|...++++.+.. +.+..++..++..+.+.|++++|.+.++++... +..++..++.++.+.|++++|.+
T Consensus 282 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 282 KEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 55556666666555555542 445555666666666666666666666655544 34556666666677777777777
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHccC
Q 012800 410 LLLSCLKSGVRILKSAQKAVVDGLRHSG 437 (456)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g 437 (456)
.++++++..+. +...+..++.++...|
T Consensus 361 ~~~~a~~~~p~-~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 361 HYKEAIRISPT-FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHTTCTT-CHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhCCC-CHHHHHhHHHHHHHcc
Confidence 77777655322 5566666666665554
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=5.2e-31 Score=235.50 Aligned_cols=362 Identities=12% Similarity=0.002 Sum_probs=280.2
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChH
Q 012800 85 AGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTD 164 (456)
Q Consensus 85 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (456)
..+.+.|++++|.+.++.+.+..+ .+...+..+...+...|++++|...++...... +.+..+|..+...+.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 345556666666666666655432 244455555666666666777766666666554 555666667777777777777
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 012800 165 NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK 244 (456)
Q Consensus 165 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 244 (456)
+|+..|+++.+.. +.+..+|..+..++...|++++|...|+++....+. +...+..+...+...|++++|...++++.
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 7777777666542 234556667777777777777777777776654322 44556666777777788888888888877
Q ss_pred HcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHh
Q 012800 245 RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 324 (456)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 324 (456)
+.. +.+..++..+...+...|++++|...|+++.+.++. +...+..+...+...|++++|...+++...... .+..+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~ 239 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHH
Confidence 764 556677888888888888999999999888886433 677888999999999999999999999987642 36788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHcc
Q 012800 325 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKA 401 (456)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~ 401 (456)
+..+...+...|++++|...++++.+.. +.+..++..++.++.+.|++++|.+.|+++... +..++..++..+...
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 9999999999999999999999999874 556889999999999999999999999998765 778899999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhcccC
Q 012800 402 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 455 (456)
Q Consensus 402 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 455 (456)
|++++|.+.++++++.. +.+..++..++.++.+.|++++|...++++.+..+.
T Consensus 319 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp TCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999998764 347889999999999999999999999999887654
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=8.7e-32 Score=243.74 Aligned_cols=206 Identities=15% Similarity=0.174 Sum_probs=175.3
Q ss_pred HHHHHHHHHHhcCCCCCHH-hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCC---------hh
Q 012800 25 KAEAIIIDGIRLGVLPDVV-TYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSL---------LS 94 (456)
Q Consensus 25 ~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~ 94 (456)
.+..+.+.+.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 4455666676666655544 5888899999999999999999999999999999999999999987654 67
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 012800 95 CSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQ 174 (456)
Q Consensus 95 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 174 (456)
.|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 012800 175 KHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRN 230 (456)
Q Consensus 175 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (456)
+.|+.||..+|+.|+.+|++.|++++|.+++++|.+.+..|+..||+.++..+...
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999998888753
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.9e-31 Score=241.58 Aligned_cols=189 Identities=17% Similarity=0.241 Sum_probs=182.0
Q ss_pred hHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCC---------hhHHHHHHHHHHhCCCCCCH
Q 012800 7 TRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVS---------FDAGYTILNRMREAGISPDV 77 (456)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~ 77 (456)
...++.+|++|++.|++++|+++|++|.+.|+.||..+||.+|.+|++.+. .+.|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346888999999999999999999999999999999999999999987664 67899999999999999999
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 012800 78 VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGL 157 (456)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 157 (456)
.+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc
Q 012800 158 CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA 195 (456)
Q Consensus 158 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 195 (456)
++.|+.++|.+++++|.+.|..|+..||+.++..|...
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999988764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7e-28 Score=223.74 Aligned_cols=404 Identities=10% Similarity=-0.034 Sum_probs=293.3
Q ss_pred chHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 012800 6 STRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIA 85 (456)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (456)
.+..+......+.+.|++++|+..|+++++.+ |+..++..+..++.+.|++++|.+.++.+.+.+ +.+..++..+..
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 45678888999999999999999999999976 588999999999999999999999999999875 446788999999
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC------------------------
Q 012800 86 GATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICG------------------------ 141 (456)
Q Consensus 86 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------ 141 (456)
++...|++++|.+.|+++...+.. +......++..+........+.+.+..+...
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 999999999999999999987643 4444444444444332222222222111100
Q ss_pred -----------CC---------CCChhHHHHHHHHHHh---cCChHHHHHHHHHHHh-----CCC--------CCcHHHH
Q 012800 142 -----------DL---------TPCTATFNIMLNGLCK---NRYTDNALRMFRGLQK-----HGF--------VPELVTY 185 (456)
Q Consensus 142 -----------~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~ 185 (456)
.. +.+...+......+.. .|++++|...++++.+ ... +.+...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 00 0113334444444443 7888888888888776 311 1234566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc
Q 012800 186 NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 265 (456)
Q Consensus 186 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (456)
..+...+...|++++|...++.+...... ...+..+..++...|++++|...++.+.+.. +.+...+..+..++...
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHh
Confidence 77777888888888888888887765433 6777777888888888888888888887765 55666777778888888
Q ss_pred CChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHH
Q 012800 266 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 345 (456)
Q Consensus 266 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 345 (456)
|++++|...++++...... +...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888888776433 56677777888888888888888888877653 225667777788888888888888888
Q ss_pred HHHHhCCC-CCC----HHHHHHHHHHHHh---CCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHH
Q 012800 346 EYMNKIGF-DSN----LEAYNCIVDRLGK---DGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSC 414 (456)
Q Consensus 346 ~~~~~~~~-~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 414 (456)
+.+.+... .++ ...+..++.++.. .|++++|.+.++++... +..++..++.++...|++++|.+.++++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 88765421 111 2367777788888 88888888888877654 5667777888888888888888888888
Q ss_pred HHcC
Q 012800 415 LKSG 418 (456)
Q Consensus 415 ~~~~ 418 (456)
++..
T Consensus 476 ~~~~ 479 (514)
T 2gw1_A 476 ADLA 479 (514)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 7764
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.96 E-value=1.4e-26 Score=216.19 Aligned_cols=427 Identities=11% Similarity=0.027 Sum_probs=229.7
Q ss_pred chHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 012800 6 STRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIA 85 (456)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (456)
.+..|..+...+.+.|++++|+..|+++++..+ .++.++..+..++.+.|++++|++.|+++.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 356778888999999999999999999998875 478899999999999999999999999998875 446788888999
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCChhHHHHHHHHHHh
Q 012800 86 GATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGD------LTPCTATFNIMLNGLCK 159 (456)
Q Consensus 86 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~ 159 (456)
++...|++++|.+.|+.+ ... |+. ....+..+...+...+|...++.+.... ..|+.. .+..+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~ 172 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT----SLASFFG 172 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH----HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH-hcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh----HHHHHHH
Confidence 999999999999999633 322 222 2223445555666678888888876531 122222 2222333
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHH-HHHHHHHHHH--------HcCCHHHHHHHHHHHhhCCCCCCH-------HHHHHH
Q 012800 160 NRYTDNALRMFRGLQKHGFVPELV-TYNILIKGLC--------KAGRLRTARWILKELGDSGHAPNA-------ITYTTI 223 (456)
Q Consensus 160 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l 223 (456)
..+.+.+...+...... .+... ....+...+. ..|++++|..+++.+....+. +. .++..+
T Consensus 173 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYT 249 (537)
T ss_dssp TSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHH
Confidence 33333333222221111 11111 1111111111 112455555555555443221 11 123334
Q ss_pred HHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCH
Q 012800 224 MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 303 (456)
Q Consensus 224 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 303 (456)
...+...|++++|...++.+.+.. |+...+..+...+...|++++|...++++.+... .+..++..+...+...|++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCH
Confidence 444455555555555555555542 2244455555555555555555555555554422 2444555555555555555
Q ss_pred HHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 012800 304 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 383 (456)
Q Consensus 304 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 383 (456)
++|...++++.+... .+...+..+...+...|++++|...++.+.+.. +.+...+..++..+...|++++|.+.|+++
T Consensus 327 ~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 327 KNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 555555555554321 133445555555555555555555555555442 333445555555555555555555555554
Q ss_pred ccC---------ChhhHHHHHHHHHcc----------CChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHH
Q 012800 384 EVK---------DSFTYSSMVHNLCKA----------KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 444 (456)
Q Consensus 384 ~~~---------~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 444 (456)
... ....+.....++... |++++|+..++++++..+ .+..++..++.++...|++++|..
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHH
Confidence 433 111122333444444 555555555555555432 244555555555555555555555
Q ss_pred HHHHHHhc
Q 012800 445 IQSKIRMA 452 (456)
Q Consensus 445 ~~~~~~~~ 452 (456)
.+++..+.
T Consensus 484 ~~~~al~~ 491 (537)
T 3fp2_A 484 LFEDSAIL 491 (537)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=2.5e-25 Score=202.98 Aligned_cols=387 Identities=10% Similarity=0.019 Sum_probs=214.2
Q ss_pred HHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHH
Q 012800 24 EKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEM 103 (456)
Q Consensus 24 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 103 (456)
..+...+.++....+ .+...+..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|.+.++++
T Consensus 9 ~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQSM-ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp --------------C-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccccH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344455555555543 366677888888888888888888888887653 346777788888888888888888888888
Q ss_pred HHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 012800 104 LEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCT---ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVP 180 (456)
Q Consensus 104 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 180 (456)
.+.+.. +..++..+..+|.+.|++++|.+.|+++.... +.+. ..+..+...+..
T Consensus 87 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~--------------------- 143 (450)
T 2y4t_A 87 IQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM--------------------- 143 (450)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH---------------------
T ss_pred HhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH---------------------
Confidence 776533 56777778888888888888888888887654 3334 555555433100
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHH
Q 012800 181 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 260 (456)
Q Consensus 181 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 260 (456)
..+..+...+...|++++|...++.+..... .+...+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 144 --~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 219 (450)
T 2y4t_A 144 --QRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKIST 219 (450)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 0111122334444555555555554444321 234444445555555555555555555554442 334444555555
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCccCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCcC-----HH
Q 012800 261 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL------------INLYCKEGKLEAAYLLLDEMEKQGFECD-----KY 323 (456)
Q Consensus 261 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~ 323 (456)
++...|++++|...++++....+. +...+..+ +..+...|++++|...++++.+.. |+ ..
T Consensus 220 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~ 296 (450)
T 2y4t_A 220 LYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVR 296 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHH
Confidence 555555555555555555443211 22222222 555666666666666666665532 22 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHH---
Q 012800 324 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHN--- 397 (456)
Q Consensus 324 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~--- 397 (456)
.+..++..+.+.|++++|...++.+.+.. +.+...+..++.+|...|++++|...++++... ++..+..+..+
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 45555666666666666666666665542 345566666666666666666666666665544 34444444422
Q ss_pred ---------HHccC-----ChhHHHHHHHH-HHHcCCC--CCH-------HhHHHHHHHHHccCChHHHH
Q 012800 398 ---------LCKAK-----RLPSASKLLLS-CLKSGVR--ILK-------SAQKAVVDGLRHSGCRREAK 443 (456)
Q Consensus 398 ---------~~~~~-----~~~~A~~~~~~-~~~~~~~--~~~-------~~~~~l~~~~~~~g~~~~A~ 443 (456)
|...| +.+++.+.+++ .++..+. |+. ..+..+..+|...|+.+.+.
T Consensus 376 ~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 376 LKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp HHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred hhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 33333 56777888886 4433221 222 25666777777777766544
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=5e-25 Score=200.93 Aligned_cols=306 Identities=9% Similarity=-0.020 Sum_probs=237.0
Q ss_pred CCCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHH
Q 012800 3 GKLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNS 82 (456)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (456)
.|.++..+..+...+.+.|++++|+.+|+.+.+..+ .+..++..+..++...|++++|...|+++.+.+ +.+..++..
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 99 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQ 99 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 567889999999999999999999999999998764 478899999999999999999999999999875 446788999
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCH---HhHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCCh
Q 012800 83 LIAGATRNSLLSCSLDLLDEMLEMGIPPDV---WSYNSL------------MHCLFQLGKPDEANRVFQDMICGDLTPCT 147 (456)
Q Consensus 83 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 147 (456)
+..++...|++++|.+.|+++.+.... +. ..+..+ ...+...|++++|...|+++.... +.+.
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 999999999999999999999986432 33 455555 444888999999999999988765 5677
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHH----
Q 012800 148 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI---- 223 (456)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---- 223 (456)
..+..+..++.+.|++++|+..|+++.+. .+.+..++..+..++...|++++|...|+++...... +...+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHH
Confidence 88889999999999999999999998775 2446788888999999999999999999988764322 33334333
Q ss_pred --------HHHHHhcCchhHHHHHHHHHHHcCCCcC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHH
Q 012800 224 --------MKCCFRNRKYKLGLEILSAMKRKGYTFD----GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN 291 (456)
Q Consensus 224 --------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 291 (456)
...+...|++++|...++.+.+.. +.+ ...+..+..++.+.|++++|...++.+.... +.+...+.
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~ 333 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 566667777777777777776653 222 2345566666677777777777777766542 22566666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 012800 292 TLINLYCKEGKLEAAYLLLDEMEKQ 316 (456)
Q Consensus 292 ~l~~~~~~~~~~~~a~~~~~~~~~~ 316 (456)
.+..+|...|++++|...++++.+.
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 7777777777777777777777664
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.5e-25 Score=208.04 Aligned_cols=374 Identities=10% Similarity=-0.023 Sum_probs=299.6
Q ss_pred CchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHH
Q 012800 5 LSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLI 84 (456)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 84 (456)
|++.+|..+..++.+.|++++|+..++++++.++ .+..++..+..++...|++++|...|+.+.+.+ +++......++
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 114 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPML 114 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHH
Confidence 5889999999999999999999999999999875 477899999999999999999999999999875 33444444444
Q ss_pred HHHHcCCChhHHHHHHHHH-----------------------------------HHCCC---------CCCHHhHHHHHH
Q 012800 85 AGATRNSLLSCSLDLLDEM-----------------------------------LEMGI---------PPDVWSYNSLMH 120 (456)
Q Consensus 85 ~~~~~~~~~~~a~~~~~~~-----------------------------------~~~~~---------~~~~~~~~~l~~ 120 (456)
..+........+.+.+..+ ..... +.+...+.....
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 4443322222222222111 11000 111444444555
Q ss_pred HHHh---cCChhHHHHHHHHHHh-----CCC--------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHH
Q 012800 121 CLFQ---LGKPDEANRVFQDMIC-----GDL--------TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVT 184 (456)
Q Consensus 121 ~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 184 (456)
.+.. .|++++|...|+++.. ... +.+..++..+...+...|++++|...++++.+.. |+...
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~ 272 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNS 272 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHH
Confidence 5554 8999999999999987 311 2235678888899999999999999999998874 33888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHH
Q 012800 185 YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 264 (456)
Q Consensus 185 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 264 (456)
+..+...+...|++++|...++.+...... +...+..+..++...|++++|...++.+.+.. +.+...+..+...+..
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 350 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYR 350 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHH
Confidence 889999999999999999999999876443 67788899999999999999999999999876 5567788889999999
Q ss_pred cCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-cC----HHhHHHHHHHHHh---cC
Q 012800 265 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-CD----KYTHTILIDGLCK---AG 336 (456)
Q Consensus 265 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~~ 336 (456)
.|++++|...++.+.+... .+...+..+...+...|++++|...++++.+.... ++ ...+..+...+.. .|
T Consensus 351 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred cCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 9999999999999988643 36778899999999999999999999998764221 11 3388899999999 99
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC
Q 012800 337 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 386 (456)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (456)
++++|...++.+.... +.+...+..++.++.+.|++++|.+.|+++...
T Consensus 430 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 430 NFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999998874 667888999999999999999999999998876
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=3.4e-23 Score=193.31 Aligned_cols=400 Identities=11% Similarity=0.061 Sum_probs=296.6
Q ss_pred CCCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHH
Q 012800 3 GKLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNS 82 (456)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (456)
.|.++.+|..+...+.+.|++++|++.++++++.++. +..++..+..++...|++++|...|+.+ .. .|+. ...
T Consensus 55 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~--~~~~--~~~ 128 (537)
T 3fp2_A 55 DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASANESLGNFTDAMFDLSVL-SL--NGDF--DGA 128 (537)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH-C------------
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHHH-hc--CCCC--ChH
Confidence 5778999999999999999999999999999998754 7889999999999999999999999743 32 2322 222
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCC------CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-HHHHHHH
Q 012800 83 LIAGATRNSLLSCSLDLLDEMLEMG------IPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTA-TFNIMLN 155 (456)
Q Consensus 83 l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~ 155 (456)
.+..+...+....+.+.++.+.... ..|+. ..+..+....+.+.+...+...... .+... ....+..
T Consensus 129 ~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~ 202 (537)
T 3fp2_A 129 SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQR 202 (537)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHH
Confidence 3444555566678999998886641 22333 3344455666666655544433322 22211 2222222
Q ss_pred HHHh--------cCChHHHHHHHHHHHhCCCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 012800 156 GLCK--------NRYTDNALRMFRGLQKHGFVPE-------LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITY 220 (456)
Q Consensus 156 ~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 220 (456)
.+.. .|++++|..+++++.+... .+ ..++..+...+...|++++|...++.+.... |+...+
T Consensus 203 ~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~ 279 (537)
T 3fp2_A 203 LYSATDEGYLVANDLLTKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSY 279 (537)
T ss_dssp HHTCSHHHHHHHHHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC-CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHH
Confidence 2221 2478899999999887632 22 2346667778888999999999999988753 457788
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhc
Q 012800 221 TTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 300 (456)
Q Consensus 221 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 300 (456)
..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|...++++.+..+. +...+..+...+...
T Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~ 357 (537)
T 3fp2_A 280 IFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQ 357 (537)
T ss_dssp HHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 888899999999999999999998876 567788888999999999999999999999886433 567888899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhC-----
Q 012800 301 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG-----FDSNLEAYNCIVDRLGKD----- 370 (456)
Q Consensus 301 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~----- 370 (456)
|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. .......+.....++...
T Consensus 358 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 436 (537)
T 3fp2_A 358 GKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDP 436 (537)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999998864 3366788888999999999999999999987642 111222344555677777
Q ss_pred -----CCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 012800 371 -----GKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 420 (456)
Q Consensus 371 -----g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 420 (456)
|++++|...|+++... +..++..++.++...|++++|.+.|+++++..+.
T Consensus 437 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 437 TQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp --CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred hhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 9999999999988765 6778899999999999999999999999887543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=8.3e-22 Score=173.93 Aligned_cols=332 Identities=9% Similarity=-0.025 Sum_probs=218.3
Q ss_pred chHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 012800 6 STRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIA 85 (456)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (456)
|+..+..+...+...|++++|+..|+.+++..+ .+..++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 567888899999999999999999999998765 377889999999999999999999999998764 336778888999
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCC--CCHHhHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 012800 86 GATRNSLLSCSLDLLDEMLEMGIP--PDVWSYNSL------------MHCLFQLGKPDEANRVFQDMICGDLTPCTATFN 151 (456)
Q Consensus 86 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 151 (456)
.+...|++++|.+.++++.+.... .+...+..+ ...+...|++++|.+.++++.... +.+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999999886420 134444444 355666666666666666666554 44555666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 012800 152 IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR 231 (456)
Q Consensus 152 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 231 (456)
.+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++........ +...+..+...
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~----- 231 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV----- 231 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-----
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHH-----
Confidence 6666666666666666666666654 2335556666666666666666666666665543221 22211111000
Q ss_pred chhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH----HHHHHHHHHHHhcCCHHHHH
Q 012800 232 KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI----VSYNTLINLYCKEGKLEAAY 307 (456)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~ 307 (456)
. .......+...+...|++++|...++++.+.... +. ..+..+..++...|++++|.
T Consensus 232 ------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 232 ------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp ------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 0 0001112245566677777777777777664322 22 22445666777777777777
Q ss_pred HHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012800 308 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 368 (456)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 368 (456)
..+++..+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..+..
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 7777776652 2256677777777777777777777777777653 444555555555443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=6.2e-22 Score=174.72 Aligned_cols=329 Identities=15% Similarity=0.076 Sum_probs=221.7
Q ss_pred CHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 012800 76 DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLN 155 (456)
Q Consensus 76 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 155 (456)
++..+..+...+...|++++|.+.|+++.+..+ .+..++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 345566667777777777777777777776543 256667777777777777777777777776654 445566777777
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCch
Q 012800 156 GLCKNRYTDNALRMFRGLQKHGFV--PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 233 (456)
Q Consensus 156 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 233 (456)
.+...|++++|...++++.+.... .+...+..+..... ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777777777777777777665210 12233322211100 01122235566777777
Q ss_pred hHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012800 234 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 313 (456)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 313 (456)
++|...++.+.+.. +.+...+..+..++...|++++|...++.+.... +.+...+..+...+...|++++|...++..
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88887777777664 5566677777777778888888888888777763 336677777778888888888888888877
Q ss_pred HHcCCCcCHHhHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCCHHHHH
Q 012800 314 EKQGFECDKYTHT------------ILIDGLCKAGNIKGARLHLEYMNKIGFDSNL----EAYNCIVDRLGKDGKIDHAI 377 (456)
Q Consensus 314 ~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~ 377 (456)
.+.... +...+. .+...+...|++++|...++.+.+.. +.+. ..+..+..++...|++++|.
T Consensus 215 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 765321 233222 23556788888889988888887763 3333 23445677888889999999
Q ss_pred HHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 012800 378 NVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 434 (456)
Q Consensus 378 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 434 (456)
+.++++... ++.++..++.++...|++++|.+.++++++..+. +...+..+..+..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence 888887664 6778888888888999999999999998876432 5566666655543
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.92 E-value=8.4e-20 Score=167.79 Aligned_cols=380 Identities=12% Similarity=0.013 Sum_probs=312.2
Q ss_pred HHHHHHHHHHHhcCCCCCHHhHHHHHHHHHc----cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc----CCChhH
Q 012800 24 EKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQ----FVSFDAGYTILNRMREAGISPDVVTYNSLIAGATR----NSLLSC 95 (456)
Q Consensus 24 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 95 (456)
..++..++...+.| ++..+..+...|.. .+++++|..+|++..+.| ++..+..+...|.. .++.++
T Consensus 24 ~~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 24 NVNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp -CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred hHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 33456666665543 67788888888887 899999999999998864 66788888888888 899999
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCChHHHH
Q 012800 96 SLDLLDEMLEMGIPPDVWSYNSLMHCLFQ----LGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCK----NRYTDNAL 167 (456)
Q Consensus 96 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 167 (456)
|.+.|++..+.| +...+..|...|.. .+++++|.+.|++..+.+ +...+..+...|.. .++.++|+
T Consensus 98 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 98 AVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999998865 66777888888888 789999999999998875 46677788888887 78999999
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCchhHHHHH
Q 012800 168 RMFRGLQKHGFVPELVTYNILIKGLCK----AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR----NRKYKLGLEI 239 (456)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 239 (456)
+.|++..+.| +...+..+...|.. .+++++|..+|++..+.+ +...+..+...|.. .+++++|..+
T Consensus 172 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 172 EWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999998874 67788888888888 899999999999988764 56677778888876 7899999999
Q ss_pred HHHHHHcCCCcChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhc-----CCHHHHHHHH
Q 012800 240 LSAMKRKGYTFDGFGYCTVIAAFVK----IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE-----GKLEAAYLLL 310 (456)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~ 310 (456)
+++..+.+ +...+..+...+.. .++.++|...|++..+.+ +...+..+...|... +++++|...+
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 99998765 34566667777777 899999999999998764 556777888888887 8999999999
Q ss_pred HHHHHcCCCcCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHh
Q 012800 311 DEMEKQGFECDKYTHTILIDGLCKAG---NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK----DGKIDHAINVFESM 383 (456)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~ 383 (456)
++..+.+ +...+..+...+...| ++++|..++++..+.+ +...+..+...|.. .+++++|.+.|+++
T Consensus 320 ~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 320 TKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9998864 4567777887777766 7899999999998864 67888899999988 89999999999998
Q ss_pred ccC-ChhhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCC-C-CHHhHHHHHHHH
Q 012800 384 EVK-DSFTYSSMVHNLCK----AKRLPSASKLLLSCLKSGVR-I-LKSAQKAVVDGL 433 (456)
Q Consensus 384 ~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~ 433 (456)
... ++..+..+...|.. .+++++|...|+++.+.++. | ++.....+...+
T Consensus 394 ~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 394 AEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred HhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence 877 88899999999988 89999999999999988643 2 344444444433
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.92 E-value=2.7e-19 Score=164.38 Aligned_cols=364 Identities=12% Similarity=0.033 Sum_probs=309.2
Q ss_pred HHHHHHHHHHhCCCCCCHhHHHHHHHHHHc----CCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCChhHH
Q 012800 60 AGYTILNRMREAGISPDVVTYNSLIAGATR----NSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQ----LGKPDEA 131 (456)
Q Consensus 60 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 131 (456)
.+.+.+....+. .++..+..+...|.. .+++++|.+.|++..+.| +...+..|...|.. .+++++|
T Consensus 25 ~~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 25 VNLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CCHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 345566665554 377788888888887 899999999999999874 67788889999998 8999999
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----cCCHHHHHH
Q 012800 132 NRVFQDMICGDLTPCTATFNIMLNGLCK----NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK----AGRLRTARW 203 (456)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~ 203 (456)
.+.|++..+.+ +...+..+...|.. .+++++|+..|++..+.| +...+..+...|.. .+++++|..
T Consensus 99 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 99 VIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99999998865 56677788888888 789999999999998875 56778888888887 789999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHH----cCChHHHHHHH
Q 012800 204 ILKELGDSGHAPNAITYTTIMKCCFR----NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK----IGRLKEATDYM 275 (456)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~ 275 (456)
.|++..+.+ +...+..+...|.. .+++++|..++++..+.+ +...+..+...|.. .+++++|..++
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999998864 67788888888887 899999999999999875 45667777777776 78999999999
Q ss_pred HHHHHCCCccCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhc-----CCHHHHHHHHH
Q 012800 276 EQMVTDGVQLDIVSYNTLINLYCK----EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA-----GNIKGARLHLE 346 (456)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~ 346 (456)
++..+.+ +...+..+...|.. .+++++|...|+...+.+ +...+..+...+... +++++|..+++
T Consensus 247 ~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 247 SQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 9998764 55677778888888 899999999999998764 556777888888877 89999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHhccC-ChhhHHHHHHHHHc----cCChhHHHHHHHHHHHcC
Q 012800 347 YMNKIGFDSNLEAYNCIVDRLGKDG---KIDHAINVFESMEVK-DSFTYSSMVHNLCK----AKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 347 ~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 418 (456)
+..+.+ +...+..+...|...| +.++|.+.|+++.+. ++..+..+...|.. .+++++|.+.|+++.+.+
T Consensus 321 ~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 321 KSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 999875 5567888888888767 789999999998877 88999999999998 899999999999999875
Q ss_pred CCCCHHhHHHHHHHHHc----cCChHHHHHHHHHHHhcc
Q 012800 419 VRILKSAQKAVVDGLRH----SGCRREAKKIQSKIRMAK 453 (456)
Q Consensus 419 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 453 (456)
++..+..++..|.. .++.++|..+|++....+
T Consensus 398 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 398 ---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 57788889999988 899999999999988765
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=5.8e-20 Score=170.61 Aligned_cols=420 Identities=12% Similarity=0.029 Sum_probs=253.7
Q ss_pred CCCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHH
Q 012800 3 GKLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNS 82 (456)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (456)
.|-+..+|..++. +.+.|++++|..+|+++++..| .+...|...+..+.+.|++++|..+|+++.+. .|+...|..
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P-~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~ 84 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFP-SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKC 84 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHH
Confidence 4668888999888 4778999999999999998754 47778999999999999999999999999876 367777776
Q ss_pred HHHHH-HcCCChhHHHH----HHHHHHHC-CCCC-CHHhHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCCC
Q 012800 83 LIAGA-TRNSLLSCSLD----LLDEMLEM-GIPP-DVWSYNSLMHCLFQ---------LGKPDEANRVFQDMICGDLTPC 146 (456)
Q Consensus 83 l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~ 146 (456)
.+... ...|+.+.|.+ +|+..... |..| +...|...+..... .|+++.|..+|++.++....+.
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence 66533 34677777665 66666543 4333 45667777766554 6788899999998887311111
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH------hhCC---CCCC-
Q 012800 147 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL------GDSG---HAPN- 216 (456)
Q Consensus 147 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~~~---~~~~- 216 (456)
...|..........+. ..+..++ . ...+++..|..++..+ .+.. ++|+
T Consensus 165 ~~~~~~~~~~e~~~~~-~~~~~~l-------------------~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~ 222 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINI-HLAKKMI-------------------E--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN 222 (530)
T ss_dssp HHHHHHHHHHHHHHCH-HHHHHHH-------------------H--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred HHHHHHHHHHHHhhch-hHHHHHH-------------------H--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 2333322221111110 0000000 0 0122334444433331 1110 1222
Q ss_pred -------HHHHHHHHHHHHhc----Cch----hHHHHHHHHHHHcCCCcChhhHHHHHHHHHH-------cCChH-----
Q 012800 217 -------AITYTTIMKCCFRN----RKY----KLGLEILSAMKRKGYTFDGFGYCTVIAAFVK-------IGRLK----- 269 (456)
Q Consensus 217 -------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~----- 269 (456)
...|...+...... ++. ..+..+|+++.... +.+...|...+..+.+ .|+++
T Consensus 223 ~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~ 301 (530)
T 2ooe_A 223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 301 (530)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhh
Confidence 13343333322211 122 35566677666653 4456666666665554 56765
Q ss_pred --HHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-H-HhHHHHHHHHHhcCCHHHHHHHH
Q 012800 270 --EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD-K-YTHTILIDGLCKAGNIKGARLHL 345 (456)
Q Consensus 270 --~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~ 345 (456)
+|..++++.++.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|
T Consensus 302 ~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 302 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 67777777765212335667777777777777777777777777764 332 2 36666666666777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCC-C
Q 012800 346 EYMNKIGFDSNLEAYNCIVDR-LGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV-R 420 (456)
Q Consensus 346 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~ 420 (456)
+++.+.. +.+...+...+.. +...|+.++|..+|+++.+. ++..|..++..+.+.|+.++|..+|++++..++ .
T Consensus 380 ~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 380 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 7776642 2223333322222 23567777777777766554 566777777777777777777777777776532 1
Q ss_pred C--CHHhHHHHHHHHHccCChHHHHHHHHHHHhc
Q 012800 421 I--LKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 452 (456)
Q Consensus 421 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 452 (456)
| ....|...+......|+.+.+.++.+++.+.
T Consensus 459 ~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 459 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp GGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 2336666666667777777777777776554
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=1.2e-19 Score=168.52 Aligned_cols=394 Identities=10% Similarity=-0.014 Sum_probs=274.7
Q ss_pred HHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCC
Q 012800 30 IIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIP 109 (456)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 109 (456)
+++.++..+. +...|..++.. .+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|.++|++++...
T Consensus 2 le~al~~~P~-~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEENPY-DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhCCC-CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 5566666543 78889988884 77899999999999998763 4567789999999999999999999999998864
Q ss_pred CCHHhHHHHHHH-HHhcCChhHHHH----HHHHHHhC-CCC-CChhHHHHHHHHHHh---------cCChHHHHHHHHHH
Q 012800 110 PDVWSYNSLMHC-LFQLGKPDEANR----VFQDMICG-DLT-PCTATFNIMLNGLCK---------NRYTDNALRMFRGL 173 (456)
Q Consensus 110 ~~~~~~~~l~~~-~~~~~~~~~a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 173 (456)
|+...|..++.. ....|+.+.|.+ +|+..... |.. ++...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 577777777653 345677777665 67666542 333 356677777766554 67888888888888
Q ss_pred HhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH------HHcC
Q 012800 174 QKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM------KRKG 247 (456)
Q Consensus 174 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~~~ 247 (456)
.+....+....|..........+. . +...++. ...+++..|..++... .+..
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~-~-------------------~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI-H-------------------LAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH-H-------------------HHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HhchhhhHHHHHHHHHHHHHhhch-h-------------------HHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 773111112222222111111110 0 1111111 1234566666666552 2221
Q ss_pred ---CCcC--------hhhHHHHHHHHHHc----CCh----HHHHHHHHHHHHCCCccCHHHHHHHHHHHHh-------cC
Q 012800 248 ---YTFD--------GFGYCTVIAAFVKI----GRL----KEATDYMEQMVTDGVQLDIVSYNTLINLYCK-------EG 301 (456)
Q Consensus 248 ---~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~ 301 (456)
++|+ ...|...+...... ++. .++..+|++++... +.+...|..++..+.+ .|
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhcc
Confidence 2333 13444444333221 232 47788999988863 3478888888888875 79
Q ss_pred CHH-------HHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCCH
Q 012800 302 KLE-------AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL-EAYNCIVDRLGKDGKI 373 (456)
Q Consensus 302 ~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~ 373 (456)
+++ +|..++++..+.-.+.+...+..++..+.+.|++++|..+|+++++.. +.+. ..|..++..+.+.|++
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~ 372 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGI 372 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCH
Confidence 987 899999999863123367888999999999999999999999999863 3233 5899999999999999
Q ss_pred HHHHHHHHHhccCC---hhhHHHHHHH-HHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 012800 374 DHAINVFESMEVKD---SFTYSSMVHN-LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 449 (456)
Q Consensus 374 ~~a~~~~~~~~~~~---~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 449 (456)
++|.++|+++.... ...+...+.. +...|++++|.++|+++++..+ .++..|..++..+.+.|+.++|+.+|++.
T Consensus 373 ~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 373 KSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 99999999998763 2333333222 3368999999999999998743 37889999999999999999999999999
Q ss_pred Hhcc
Q 012800 450 RMAK 453 (456)
Q Consensus 450 ~~~~ 453 (456)
...+
T Consensus 452 l~~~ 455 (530)
T 2ooe_A 452 LTSG 455 (530)
T ss_dssp HHSC
T ss_pred Hhcc
Confidence 8764
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.91 E-value=8e-21 Score=165.56 Aligned_cols=199 Identities=8% Similarity=-0.042 Sum_probs=93.7
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 012800 111 DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIK 190 (456)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 190 (456)
+...+..+...+...|++++|.++|+++.... +.+...+..++.++...|++++|..+++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 33344444555555555555555555554443 3333444444445555555555555555554431 223344444445
Q ss_pred HHHHcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChH
Q 012800 191 GLCKAG-RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 269 (456)
Q Consensus 191 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (456)
.+...| ++++|...++++...... +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 555555 555555555554443221 33344444445555555555555555544443 223333444444455555555
Q ss_pred HHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012800 270 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 314 (456)
Q Consensus 270 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 314 (456)
+|...++++.+... .+...+..+...+...|++++|...++++.
T Consensus 177 ~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 177 LAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 55555555544322 234444445555555555555555554444
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.91 E-value=6e-21 Score=166.34 Aligned_cols=291 Identities=11% Similarity=0.040 Sum_probs=176.0
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 012800 41 DVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMH 120 (456)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 120 (456)
+...+..+...+...|++++|.++|+.+.+.. +.+...+..++.++...|++++|..+++++.+.... +...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 44455556666666666666666666665543 223444555556666666666666666666654322 4555666666
Q ss_pred HHHhcC-ChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHH
Q 012800 121 CLFQLG-KPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 199 (456)
Q Consensus 121 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 199 (456)
.+...| ++++|.+.|+++.... +.+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 666666 6666666666666554 4445566666666666666666666666665542 223444555666666666666
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcC--------CCcChhhHHHHHHHHHHcCChHHH
Q 012800 200 TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG--------YTFDGFGYCTVIAAFVKIGRLKEA 271 (456)
Q Consensus 200 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a 271 (456)
+|...++++..... .+...+..+...+...|++++|...++++.+.. .+.....+..+..++...|++++|
T Consensus 177 ~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 66666666665432 245566666666666677777766666665431 122345666677777777777777
Q ss_pred HHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHH-HhcCCH
Q 012800 272 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL-CKAGNI 338 (456)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 338 (456)
...+++..+.... +...+..+...+...|++++|...++++.+.. +.+...+..+..++ ...|+.
T Consensus 256 ~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 7777777665332 55667777777777777777777777776643 22555666666655 344443
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.88 E-value=2.3e-20 Score=165.28 Aligned_cols=298 Identities=9% Similarity=-0.066 Sum_probs=128.9
Q ss_pred CChhHHHH-HHHHHHhCCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHH
Q 012800 126 GKPDEANR-VFQDMICGDL---TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 201 (456)
Q Consensus 126 ~~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 201 (456)
|++++|.+ .+++...... ..+...+..+...+...|++++|+..++++.+.. +.+...+..+..++...|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 45555555 5554333210 0123345555555566666666666666655542 23455555555566666666666
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012800 202 RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 281 (456)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 281 (456)
...++++..... .+..++..+..++...|++++|...++++.+.. +.+...+...... .. .
T Consensus 118 ~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~-------~--- 178 (368)
T 1fch_A 118 ISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG-------G--- 178 (368)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC-------------------------
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh-------h---
Confidence 666665554332 245555555556666666666666666655543 2121111110000 00 0
Q ss_pred CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 012800 282 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY 360 (456)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 360 (456)
.. ....+..+...+ ..|++++|...++++.+..... +..++..+...+...|++++|...++++.+.. +.+...+
T Consensus 179 -~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 254 (368)
T 1fch_A 179 -AG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLW 254 (368)
T ss_dssp ---------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred -hc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHH
Confidence 00 000001111111 3444444444444444321110 23344444444444444444444444444331 2334444
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC----------CHHhHH
Q 012800 361 NCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI----------LKSAQK 427 (456)
Q Consensus 361 ~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------~~~~~~ 427 (456)
..++.++...|++++|...|+++... +..++..++.++.+.|++++|.+.++++++..+.. ...+|.
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 334 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence 44444444444444444444444332 33444445555555555555555555554432110 144555
Q ss_pred HHHHHHHccCChHHHHHHHH
Q 012800 428 AVVDGLRHSGCRREAKKIQS 447 (456)
Q Consensus 428 ~l~~~~~~~g~~~~A~~~~~ 447 (456)
.++.++...|++++|..+++
T Consensus 335 ~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 335 TLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHhCChHhHHHhHH
Confidence 55555555555555555544
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.88 E-value=1.7e-20 Score=166.16 Aligned_cols=298 Identities=12% Similarity=-0.054 Sum_probs=144.7
Q ss_pred CCChhHHHH-HHHHHHHCCC---CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHH
Q 012800 90 NSLLSCSLD-LLDEMLEMGI---PPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDN 165 (456)
Q Consensus 90 ~~~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 165 (456)
.|++++|.+ .+++...... ..+...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 456666666 5554443221 1123456666677777777777777777777664 4556667777777777777777
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 012800 166 ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR 245 (456)
Q Consensus 166 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 245 (456)
|+..++++.+.. +.+..++..+...+...|++++|...++++...... +...+..+... .. ..
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~~- 179 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------GA- 179 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC------------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------hh-
Confidence 777777776653 335666777777777777777777777777664322 11111111000 00 00
Q ss_pred cCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCcc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHh
Q 012800 246 KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 324 (456)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 324 (456)
.+ ...+..+.. +...|++++|...++++.+..+.. +..++..+...|...|++++|...++++.+.. +.+..+
T Consensus 180 ---~~-~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 253 (368)
T 1fch_A 180 ---GL-GPSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLL 253 (368)
T ss_dssp ----------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred ---cc-cHHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHH
Confidence 00 000001111 113444444444444444432111 24444444444444555555555554444432 113344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---C-----------hhh
Q 012800 325 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---D-----------SFT 390 (456)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~-----------~~~ 390 (456)
+..+...+...|++++|...++++.+.. +.+...+..++.++.+.|++++|...|+++... + ..+
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 332 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHH
Confidence 4444444555555555555555544432 333444445555555555555555555444332 1 345
Q ss_pred HHHHHHHHHccCChhHHHHHHH
Q 012800 391 YSSMVHNLCKAKRLPSASKLLL 412 (456)
Q Consensus 391 ~~~l~~~~~~~~~~~~A~~~~~ 412 (456)
|..++.++...|++++|..+++
T Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 333 WSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHhCChHhHHHhHH
Confidence 5555555555555555555544
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.86 E-value=8.6e-20 Score=161.38 Aligned_cols=266 Identities=7% Similarity=-0.087 Sum_probs=156.1
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 012800 42 VVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHC 121 (456)
Q Consensus 42 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 121 (456)
...+..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|++.|+++.+... .+..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3445555666666666666666666665543 23455566666666666666666666666655432 245556666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCC----------hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CcHHHHHHHHH
Q 012800 122 LFQLGKPDEANRVFQDMICGDLTPC----------TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV-PELVTYNILIK 190 (456)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 190 (456)
|...|++++|...|+++.... +.+ ...+..+...+...|++++|+..++++.+.... ++..++..+..
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 666666666666666655432 111 112233456666666777777777666654211 14566666667
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHH
Q 012800 191 GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 270 (456)
Q Consensus 191 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (456)
.+...|++++|...++++..... .+..++..+..++...|++++|...++++.+.. +.+..++..+..++...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 77777777777777776665432 256666667777777777777777777776654 4456666677777777777777
Q ss_pred HHHHHHHHHHCCCc-----------cCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012800 271 ATDYMEQMVTDGVQ-----------LDIVSYNTLINLYCKEGKLEAAYLLLDE 312 (456)
Q Consensus 271 a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 312 (456)
|...++++.+.... .+...|..+..++...|+.+.+..+..+
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 77777776653111 1246677777778888888777766654
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=2.5e-18 Score=157.58 Aligned_cols=382 Identities=11% Similarity=-0.038 Sum_probs=230.1
Q ss_pred chHHHHHHHHHHHhhCcHHHHHHHHHHHHhc--------CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCC-----
Q 012800 6 STRLLNICVCTFCKANRLEKAEAIIIDGIRL--------GVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAG----- 72 (456)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 72 (456)
.+.+||.+...+...|++++|++.|+++++. .......+|+.+..+|...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3567888888888889998888888887653 111245578888888888888888888888775421
Q ss_pred -C-CCCHhHHHHHHHHHHc--CCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH---HHhcCChhHHHHHHHHHHhCCCCC
Q 012800 73 -I-SPDVVTYNSLIAGATR--NSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHC---LFQLGKPDEANRVFQDMICGDLTP 145 (456)
Q Consensus 73 -~-~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~ 145 (456)
. .....++..+..++.. .+++++|++.|++..+..+. ++..+..+..+ +...++.++|++.+++..+.+ +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 0 1123455554444443 45688888888888876432 44455444444 345677788888888877665 45
Q ss_pred ChhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 012800 146 CTATFNIMLNGLCK----NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT 221 (456)
Q Consensus 146 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 221 (456)
+..++..+...+.. .++.++|.+.+++..... +.+...+..+...|...|++++|...+.+..+..+. +..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence 55666665555444 456778888888877653 446677788888888888888888888887765332 455565
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcC
Q 012800 222 TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 301 (456)
Q Consensus 222 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 301 (456)
.+..+|...+....+ .. ... ........+..+.|...+++....++. +...+..+...|...|
T Consensus 286 ~lg~~y~~~~~~~~~---------~~-~~~------~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMN---------LR-ENG------MYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhh---------HH-HHH------HHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhc
Confidence 555554322111100 00 000 000111123456778888877765332 4556777888888888
Q ss_pred CHHHHHHHHHHHHHcCCCcCHH--hHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 012800 302 KLEAAYLLLDEMEKQGFECDKY--THTILID-GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 378 (456)
Q Consensus 302 ~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 378 (456)
++++|...|++..+....+... .+..+.. .....|++++|+..+++..+. .|+....... ...+.+
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHHHHH
Confidence 8888888888887754333221 2223322 234678888999998888875 3432222211 233444
Q ss_pred HHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 012800 379 VFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 419 (456)
Q Consensus 379 ~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 419 (456)
+++..... ++.+|..++.+|...|++++|++.|+++++.+.
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 45544333 778899999999999999999999999998753
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.86 E-value=4.2e-20 Score=163.41 Aligned_cols=232 Identities=9% Similarity=-0.067 Sum_probs=110.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 012800 147 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 226 (456)
Q Consensus 147 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 226 (456)
...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...|+++....+ .+..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3445566666666666666666666665542 33555666666666666666666666666555322 245555666666
Q ss_pred HHhcCchhHHHHHHHHHHHcCCCcChhhH----------HHHHHHHHHcCChHHHHHHHHHHHHCCCc-cCHHHHHHHHH
Q 012800 227 CFRNRKYKLGLEILSAMKRKGYTFDGFGY----------CTVIAAFVKIGRLKEATDYMEQMVTDGVQ-LDIVSYNTLIN 295 (456)
Q Consensus 227 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 295 (456)
+...|++++|...++++.+.. +.+...+ ..+...+...|++++|...++++....+. ++..++..+..
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 666666666666666665542 1111111 12233444444455555555444443211 03444444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 012800 296 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 375 (456)
Q Consensus 296 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 375 (456)
.|...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..++.+|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 4444444444444444444432 1133444444444444444444444444444431 2233444444444444444444
Q ss_pred HHHHHHHh
Q 012800 376 AINVFESM 383 (456)
Q Consensus 376 a~~~~~~~ 383 (456)
|...|+++
T Consensus 300 A~~~~~~a 307 (365)
T 4eqf_A 300 AVSNFLTA 307 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 26
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=7.6e-17 Score=155.68 Aligned_cols=380 Identities=10% Similarity=0.034 Sum_probs=280.4
Q ss_pred CchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCC---CCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHH
Q 012800 5 LSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVL---PDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYN 81 (456)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 81 (456)
.+|.--...+.+|...|.+.+|++++++++-. +. -+....+.++.+..+. +..+..+..++.... + ..
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~-~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~ 1053 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLD-NSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---AP 1053 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcC-CCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HH
Confidence 35555667778888999999999999988843 22 2345666677666666 445555555554422 1 33
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC
Q 012800 82 SLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNR 161 (456)
Q Consensus 82 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 161 (456)
.+...+...|.+++|..+|++... .....+.+ +...+++++|.++.++. .+..+|..+..++...|
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VL---ie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV-----NTSAVQVL---IEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHH---HHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCC
Confidence 366778889999999999988531 22222333 22778899999988865 24678889999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHH
Q 012800 162 YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 241 (456)
Q Consensus 162 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 241 (456)
++++|++.|.+. .+...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|++.++++....+
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f-- 1189 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF-- 1189 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH--
Confidence 999999999664 367788889999999999999999998877654 3333344588888888888754433
Q ss_pred HHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC
Q 012800 242 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 321 (456)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 321 (456)
.+ .++...+..+...|...|++++|..+|..+ ..|..++.+|.+.|++++|.+.+++. .+
T Consensus 1190 --I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n 1249 (1630)
T 1xi4_A 1190 --IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NS 1249 (1630)
T ss_pred --Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CC
Confidence 21 445566777889999999999999999875 36888999999999999999999877 25
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHH
Q 012800 322 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNL 398 (456)
Q Consensus 322 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~ 398 (456)
..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++..... ....|..+..+|
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLy 1324 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY 1324 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHH
Confidence 68888888899999998888876653 3446677788999999999999999999988766 444565566666
Q ss_pred Hc--cCChhHHHHHHHHHHHcCCCC------CHHhHHHHHHHHHccCChHHHHH
Q 012800 399 CK--AKRLPSASKLLLSCLKSGVRI------LKSAQKAVVDGLRHSGCRREAKK 444 (456)
Q Consensus 399 ~~--~~~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~ 444 (456)
.+ .++..++.++|..-. +++| +...|..++..|.+.|+++.|..
T Consensus 1325 aKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1325 SKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 54 455666666666443 3332 56678889999999999999884
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.85 E-value=1.1e-18 Score=150.93 Aligned_cols=282 Identities=13% Similarity=0.111 Sum_probs=98.6
Q ss_pred hhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHH
Q 012800 19 KANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLD 98 (456)
Q Consensus 19 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 98 (456)
+.|++++|.++++++ +++.+|..++.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|++
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 456667777777665 1224666777777777777777777643 2455566666677777777777777
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 012800 99 LLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF 178 (456)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 178 (456)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 66555542 2345556666777777777766666553 245556777777777777777777777655
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHH
Q 012800 179 VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 258 (456)
Q Consensus 179 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 258 (456)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +...+.....+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence 24666667777777777777777665 2566677777777777777776443332 12233334456
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCc------CHHhHHHHHHH
Q 012800 259 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK-QGFEC------DKYTHTILIDG 331 (456)
Q Consensus 259 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~l~~~ 331 (456)
+..|.+.|++++|..+++..+... +-....|+.+..+|++- ++++..+.++.... .+++| +...|..++..
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 666777777777777777666553 33556666665555543 33333333332221 11222 34456666666
Q ss_pred HHhcCCHHHHHH
Q 012800 332 LCKAGNIKGARL 343 (456)
Q Consensus 332 ~~~~~~~~~a~~ 343 (456)
|...++++.|..
T Consensus 292 y~~~~e~d~A~~ 303 (449)
T 1b89_A 292 YDKYEEYDNAII 303 (449)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHhhchHHHHHH
Confidence 666666666654
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.85 E-value=7.1e-19 Score=152.09 Aligned_cols=335 Identities=12% Similarity=0.096 Sum_probs=169.0
Q ss_pred CchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHH
Q 012800 5 LSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLI 84 (456)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 84 (456)
+++.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++++|+..++...+. .+++.+.+.++
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li 101 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 101 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHH
Confidence 34568999999999999999999999753 47778899999999999999999977777664 45677888899
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChH
Q 012800 85 AGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTD 164 (456)
Q Consensus 85 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (456)
.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..++.++.+.|+++
T Consensus 102 ~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq 165 (449)
T 1b89_A 102 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 165 (449)
T ss_dssp -------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHH
T ss_pred HHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHH
Confidence 99999999999888774 267779999999999999999999999876 47889999999999999
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 012800 165 NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK 244 (456)
Q Consensus 165 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 244 (456)
+|.+.++++ .++.+|..++.+|...|+++.|...... +...+.....++..|.+.|.+++|..+++...
T Consensus 166 ~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 166 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999999988 2778999999999999999999655443 22344445578888999999999999999988
Q ss_pred HcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCcc------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012800 245 RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQL------DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 317 (456)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 317 (456)
... +.....|.-+.-+|++- ++++..+.++...+. +++| +...|..++..|.+.++++.|... |.++
T Consensus 235 ~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h- 308 (449)
T 1b89_A 235 GLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH- 308 (449)
T ss_dssp TST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHS-
T ss_pred CCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhC-
Confidence 776 56666777776666654 444444444433332 3443 456688888889999999988763 4443
Q ss_pred CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhcc
Q 012800 318 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 385 (456)
Q Consensus 318 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 385 (456)
+|+..--..+.....+..+.+---+...-.+.. .| ..++.|+.++...=+...+.++|++...
T Consensus 309 -~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~--~p--~~l~~ll~~l~~~ld~~r~v~~~~~~~~ 371 (449)
T 1b89_A 309 -PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQ 371 (449)
T ss_dssp -TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTC
T ss_pred -ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc--CH--HHHHHHHHHHHhccCcHHHHHHHHHcCC
Confidence 233333333334445666665544444444433 33 4577888888888888888888876543
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=4.3e-18 Score=156.02 Aligned_cols=385 Identities=11% Similarity=-0.066 Sum_probs=235.3
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHhC--------CCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHC-----C
Q 012800 41 DVVTYNMLIDAYCQFVSFDAGYTILNRMREA--------GISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEM-----G 107 (456)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~ 107 (456)
....||.+..++...|++++|++.|++..+. ..+....+|..+..+|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3457888888888888888888888776542 11223567788888888888888888888776542 1
Q ss_pred --CCCCHHhHHHHHHHHHhc--CChhHHHHHHHHHHhCCCCCChhHHHHHHHH---HHhcCChHHHHHHHHHHHhCCCCC
Q 012800 108 --IPPDVWSYNSLMHCLFQL--GKPDEANRVFQDMICGDLTPCTATFNIMLNG---LCKNRYTDNALRMFRGLQKHGFVP 180 (456)
Q Consensus 108 --~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~ 180 (456)
......++..+..++... +++++|.+.|++..+.. |.+...+..+..+ +...++.++|++.+++..+.. +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 011244555555555443 46788888888877664 4445555554444 334566777888887776652 23
Q ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHH
Q 012800 181 ELVTYNILIKGLCK----AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 256 (456)
Q Consensus 181 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 256 (456)
+...+..+...+.. .+++++|...+++.....+ .+..++..+...+...|++++|...++++.+.. |.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 45555555444433 3556777777777666433 356667777777888888888888888777664 44555555
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC
Q 012800 257 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 336 (456)
Q Consensus 257 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 336 (456)
.+..+|...+... ... ............+.++.|...++...+... .+..++..+...+...|
T Consensus 286 ~lg~~y~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQV---------MNL-------RENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh---------hhH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhc
Confidence 5554443211100 000 000001111123346788999998887643 35677888999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCH--HHHHHHHH-HHHhCCCHHHHHHHHHHhccCChhhHHHHHHHHHccCChhHHHHHHHH
Q 012800 337 NIKGARLHLEYMNKIGFDSNL--EAYNCIVD-RLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLS 413 (456)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 413 (456)
++++|...|+++.+....+.. ..+..+.. .....|+.++|+..|+++...++..+.. .+....+.+++++
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~-------~~~~~~l~~~~~~ 421 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK-------EKMKDKLQKIAKM 421 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH-------HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH-------HHHHHHHHHHHHH
Confidence 999999999999886433322 12333333 3457899999999999988774443321 1223455667777
Q ss_pred HHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhccc
Q 012800 414 CLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 454 (456)
Q Consensus 414 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 454 (456)
.++.++ .++.++..++.++...|++++|.+.|++..+.+.
T Consensus 422 ~l~~~p-~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 422 RLSKNG-ADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHCC--CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 777654 4788999999999999999999999999887653
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.85 E-value=3.1e-19 Score=155.26 Aligned_cols=280 Identities=8% Similarity=-0.079 Sum_probs=159.7
Q ss_pred chHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 012800 6 STRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIA 85 (456)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (456)
+...+..+...+...|++++|+.+|+++.+..+. +...+..+..++...|++++|.+.++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 3445566677777778888888888877776543 66677777777777777777777777777653 335666777777
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHH-HH-HHHhcCCh
Q 012800 86 GATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIM-LN-GLCKNRYT 163 (456)
Q Consensus 86 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~ 163 (456)
.+...|++++|.+.++++.+.... +...+..+.... |+......+ .. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence 777777777777777777765322 222222220000 000000011 11 24444555
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 012800 164 DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 243 (456)
Q Consensus 164 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 243 (456)
++|...++++.+.. +.+...+..+...+...|++++|...++++..... .+..++..+..++...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555554432 22445555555555555555555555555544322 24455555566666666666666666665
Q ss_pred HHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCcc-----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012800 244 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL-----------DIVSYNTLINLYCKEGKLEAAYLLLDE 312 (456)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 312 (456)
.+.. +.+...+..+..++...|++++|...++++....... +...+..+..++...|++++|..++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5543 3445556666666666666666666666665542211 355666677777777777777766654
Q ss_pred H
Q 012800 313 M 313 (456)
Q Consensus 313 ~ 313 (456)
.
T Consensus 312 ~ 312 (327)
T 3cv0_A 312 N 312 (327)
T ss_dssp C
T ss_pred H
Confidence 3
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.85 E-value=1.2e-18 Score=151.49 Aligned_cols=260 Identities=9% Similarity=-0.053 Sum_probs=143.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC
Q 012800 118 LMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 197 (456)
Q Consensus 118 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 197 (456)
+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...+...|+
T Consensus 27 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 27 EGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCC
Confidence 3334444444444444444443332 2233344444444444444444444444443331 2233344444444444444
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHH-------------HH-HH-HHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHH
Q 012800 198 LRTARWILKELGDSGHAPNAITYT-------------TI-MK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 262 (456)
Q Consensus 198 ~~~a~~~~~~~~~~~~~~~~~~~~-------------~l-~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (456)
+++|...++++...... +...+. .+ .. .+...|++++|...++++.+.. +.+...+..+...+
T Consensus 105 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 182 (327)
T 3cv0_A 105 ANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLY 182 (327)
T ss_dssp HHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 44444444444432111 111111 11 11 2556677777777777777664 44566677777777
Q ss_pred HHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHH
Q 012800 263 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 342 (456)
Q Consensus 263 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 342 (456)
...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.
T Consensus 183 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 260 (327)
T 3cv0_A 183 NLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAA 260 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 777777777777777766532 256667777777777777777777777776653 225566777777777777777777
Q ss_pred HHHHHHHhCCCCC------------CHHHHHHHHHHHHhCCCHHHHHHHHHHhc
Q 012800 343 LHLEYMNKIGFDS------------NLEAYNCIVDRLGKDGKIDHAINVFESME 384 (456)
Q Consensus 343 ~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 384 (456)
..++++.+.. +. +...+..+..++.+.|++++|..++++..
T Consensus 261 ~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 261 KQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7777766542 22 35566666667777777777776666443
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=2.1e-18 Score=146.27 Aligned_cols=272 Identities=11% Similarity=-0.001 Sum_probs=214.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 012800 154 LNGLCKNRYTDNALRMFRGLQKHGFVPEL--VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR 231 (456)
Q Consensus 154 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 231 (456)
++-....|++..|+..++..... .|+. .....+.++|...|+++.|...++. ..+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 45566789999999999877554 3333 3556678999999999999986644 23457778888889999999
Q ss_pred chhHHHHHHHHHHHcCC-CcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012800 232 KYKLGLEILSAMKRKGY-TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 310 (456)
Q Consensus 232 ~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 310 (456)
+.++|.+.++++...+. |.+...+..+...+...|++++|.+.+++ +.+...+..++..+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999987753 44566677777899999999999999987 457888999999999999999999999
Q ss_pred HHHHHcCCCcCHHhHHH----HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC
Q 012800 311 DEMEKQGFECDKYTHTI----LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 386 (456)
Q Consensus 311 ~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (456)
+++.+.. |+.. ... ++..+...|++++|..+|+++.+. .+.+...++.++.++.+.|++++|.+.|+++...
T Consensus 154 ~~~~~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 154 KKMQDQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9998864 4432 222 233344558999999999999987 4778999999999999999999999999998765
Q ss_pred ---ChhhHHHHHHHHHccCChhH-HHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHH
Q 012800 387 ---DSFTYSSMVHNLCKAKRLPS-ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQ 446 (456)
Q Consensus 387 ---~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 446 (456)
++.++..++..+...|+.++ +.++++++++..+. ++.+. ....+.+.++++..-|
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~-~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS-HPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHH----HHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC-ChHHH----HHHHHHHHHHHHHHHc
Confidence 77889999999999999876 57899999877543 44333 3445555566655443
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=5.3e-18 Score=143.74 Aligned_cols=254 Identities=13% Similarity=0.120 Sum_probs=147.6
Q ss_pred HHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCCh
Q 012800 14 VCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLL 93 (456)
Q Consensus 14 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 93 (456)
|+.....|+++.|+..++......+.........+.++|...|+++.|+..++. . -+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 344566677777777776654433222223445566777777777777765543 1 245566666677777777777
Q ss_pred hHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 012800 94 SCSLDLLDEMLEMGIPP-DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRG 172 (456)
Q Consensus 94 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 172 (456)
++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777776654323 444555566667777777777777665 34556666666677777777777777777
Q ss_pred HHhCCCCCcHHHH---HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCC
Q 012800 173 LQKHGFVPELVTY---NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT 249 (456)
Q Consensus 173 ~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 249 (456)
+.+.. |+.... ..++..+...|++++|..+|+++.... +.+...++.+..++...|++++|...++++.+.. |
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 66542 232111 112222333456666666666655542 2355555556666666666666666666665554 4
Q ss_pred cChhhHHHHHHHHHHcCChHH-HHHHHHHHHHC
Q 012800 250 FDGFGYCTVIAAFVKIGRLKE-ATDYMEQMVTD 281 (456)
Q Consensus 250 ~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 281 (456)
.+..++..++..+...|+.++ +.++++++.+.
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 455555555555555665543 34555555543
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=7.9e-16 Score=148.76 Aligned_cols=354 Identities=13% Similarity=0.080 Sum_probs=264.2
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHhCCC--CCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 012800 41 DVVTYNMLIDAYCQFVSFDAGYTILNRMREAGI--SPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSL 118 (456)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 118 (456)
++.--...+.+|...|.+.+|+++++++.-.+- .-+...-+.++.+..+. +..+..++..++... + ...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHH
Confidence 444456777888889999999999998884321 12345556677776666 556666666665532 2 2346
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCH
Q 012800 119 MHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 198 (456)
Q Consensus 119 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 198 (456)
...+...|.+++|..+|++.. -.....+.++ ...+++++|.++.++.. ++.+|..+..++...|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCH
Confidence 778888999999999999863 1122223332 26788999999988662 567888999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 012800 199 RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM 278 (456)
Q Consensus 199 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 278 (456)
++|.+.|.+. -+...|..++.++.+.|++++|.+++....+.. +++.....++.+|.+.+++++...+.
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 9999999664 377888889999999999999999999888764 33333345888899998888644443
Q ss_pred HHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 012800 279 VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 358 (456)
Q Consensus 279 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 358 (456)
+ .++...+..+...|...|++++|..+|... ..|..++..+.+.|++++|.+.+++. .+..
T Consensus 1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~ 1251 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTR 1251 (1630)
T ss_pred -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHH
Confidence 2 245667778999999999999999999885 37889999999999999999999876 3568
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhccCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHH--Hcc
Q 012800 359 AYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL--RHS 436 (456)
Q Consensus 359 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~ 436 (456)
+|..+..+|...|++..|...... ...++..+..++..|.+.|.+++|+.+++..+..+ +-....|..+..++ .+-
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCH
Confidence 899999999999999999988775 44477788899999999999999999999988654 22445554444444 445
Q ss_pred CChHHHHHHHHH
Q 012800 437 GCRREAKKIQSK 448 (456)
Q Consensus 437 g~~~~A~~~~~~ 448 (456)
++.-++.++|.+
T Consensus 1330 eklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1330 QKMREHLELFWS 1341 (1630)
T ss_pred HHHHHHHHHHHH
Confidence 566666666553
No 35
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.81 E-value=1.1e-17 Score=151.15 Aligned_cols=346 Identities=12% Similarity=-0.022 Sum_probs=171.1
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCCh---hHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 012800 12 ICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSF---DAGYTILNRMREAGISPDVVTYNSLIAGAT 88 (456)
Q Consensus 12 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 88 (456)
.+...+.+.|++++|+++|+++.+.| ++..+..+..++...|+. ++|.++|++..+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 45677788888888888888887765 334455666667777777 7888888877753 4555566666444
Q ss_pred cCC-----ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhH---HHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Q 012800 89 RNS-----LLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDE---ANRVFQDMICGDLTPCTATFNIMLNGLCKN 160 (456)
Q Consensus 89 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 160 (456)
..+ +.++|.+.|++..+.|.. ..+..|...|...+..++ +.+.+......| +...+..+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 444 667888888888776532 256667777766654333 344444443333 244555666666666
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc----Cch
Q 012800 161 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG---RLRTARWILKELGDSGHAPNAITYTTIMKCCFRN----RKY 233 (456)
Q Consensus 161 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~ 233 (456)
+.++++......+.+.-...++..+..+...|...| +.++|...|++....|.. +...+..+...|... +++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCH
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCH
Confidence 655444433222222111112235666666666666 666666666666665433 444334445555433 456
Q ss_pred hHHHHHHHHHHHcCCCcChhhHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcC-----CHHH
Q 012800 234 KLGLEILSAMKRKGYTFDGFGYCTVIAA-F--VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG-----KLEA 305 (456)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~ 305 (456)
++|..+|+... . -++..+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++
T Consensus 234 ~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 66666666655 2 233344444443 2 34556666666666655543 3444455555554 33 5566
Q ss_pred HHHHHHHHHHcCCCcCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHH
Q 012800 306 AYLLLDEMEKQGFECDKYTHTILIDGLCK----AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK----DGKIDHAI 377 (456)
Q Consensus 306 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 377 (456)
|...|++.. . -+......+...|.. ..++++|..+|++..+.| +......|..+|.. ..+.++|.
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 666655554 2 133444444444433 225555555555555544 12233344444432 23455555
Q ss_pred HHHHHhccC
Q 012800 378 NVFESMEVK 386 (456)
Q Consensus 378 ~~~~~~~~~ 386 (456)
..|+.+...
T Consensus 379 ~~~~~A~~~ 387 (452)
T 3e4b_A 379 VFSQLAKAQ 387 (452)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHC
Confidence 555554443
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.78 E-value=2e-16 Score=143.05 Aligned_cols=375 Identities=12% Similarity=0.023 Sum_probs=259.9
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCCh---hHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 012800 47 MLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLL---SCSLDLLDEMLEMGIPPDVWSYNSLMHCLF 123 (456)
Q Consensus 47 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 123 (456)
.+...+.+.|++++|.++|++..+.| ++..+..+...|...|+. ++|.+.|++..+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 36677788999999999999998875 344455566667778888 8999999998864 5566777777566
Q ss_pred hcC-----ChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc
Q 012800 124 QLG-----KPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYT---DNALRMFRGLQKHGFVPELVTYNILIKGLCKA 195 (456)
Q Consensus 124 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 195 (456)
..+ ++++|...|++....| .+ ..+..+...|...+.. .++.+.+......| +......+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g-~~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANG-EG--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTT-CS--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCC-CH--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 655 7889999999999876 33 3666777777776554 44566666665554 345666777888887
Q ss_pred CCH----HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---chhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc---
Q 012800 196 GRL----RTARWILKELGDSGHAPNAITYTTIMKCCFRNR---KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI--- 265 (456)
Q Consensus 196 ~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 265 (456)
+.+ +.+..+++..... ++..+..+...|...| +.++|...|+...+.+ +++...+..+...|...
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGS
T ss_pred CCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCC
Confidence 754 4444445444432 3337788888898899 9999999999999988 66666656677777655
Q ss_pred -CChHHHHHHHHHHHHCCCccCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC-----
Q 012800 266 -GRLKEATDYMEQMVTDGVQLDIVSYNTLINL-Y--CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG----- 336 (456)
Q Consensus 266 -~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----- 336 (456)
+++++|...|++.. . -++..+..+... + ...+++++|...|++..+.| +...+..+...|. .|
T Consensus 230 ~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp SCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCC
Confidence 69999999999988 3 356667777776 4 46899999999999999876 6677777877776 45
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHhccC-ChhhHHHHHHHHHc----cCChhHH
Q 012800 337 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK----DGKIDHAINVFESMEVK-DSFTYSSMVHNLCK----AKRLPSA 407 (456)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A 407 (456)
++++|..+|++.. . .+......|...|.. ..++++|...|++..+. ++.....+...|.. ..++.+|
T Consensus 302 d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 302 DAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp CHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred CHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 9999999999987 4 367788888888876 44999999999998877 78888888888875 5689999
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhc
Q 012800 408 SKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 452 (456)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 452 (456)
...|+++.+.|.+ +.......+......++.++|.++.++..+.
T Consensus 378 ~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 378 YVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 9999999988743 3333333333334455677788887776554
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.4e-16 Score=133.32 Aligned_cols=223 Identities=13% Similarity=0.063 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCC--cC----hhhH
Q 012800 182 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT--FD----GFGY 255 (456)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 255 (456)
...+..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|...++++.+.... ++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4566777777788888888888888777665 56777777777788888888888888777765311 11 4566
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhc
Q 012800 256 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 335 (456)
Q Consensus 256 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 335 (456)
..+..++...|++++|...++++... .|+. ..+...|++++|...++.+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 67777777777777777777777764 3342 34555667777777777776642 22455666677777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHH
Q 012800 336 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLL 412 (456)
Q Consensus 336 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~ 412 (456)
|++++|...++++.+.. +.+...+..++.++...|++++|.+.++++... ++..|..++.++...|++++|.+.++
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77777777777776653 445667777777777777777777777766554 55667777777777777777777777
Q ss_pred HHHHc
Q 012800 413 SCLKS 417 (456)
Q Consensus 413 ~~~~~ 417 (456)
++++.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77655
No 38
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.77 E-value=6.7e-14 Score=130.67 Aligned_cols=426 Identities=10% Similarity=0.021 Sum_probs=254.4
Q ss_pred HHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCC---hhHHHHHHHH
Q 012800 26 AEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSL---LSCSLDLLDE 102 (456)
Q Consensus 26 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~ 102 (456)
.+..|++.+..++ -|...|..++..+.+.+.++.+..+|+.+... .+.....|...+..-.+.++ ++.+.++|++
T Consensus 51 ~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 51 VIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 3444555555554 36666666666666666666666666666654 34445556555665556666 6666666666
Q ss_pred HHHCC-CCCCHHhHHHHHHHHHhcCCh--------hHHHHHHHHHHh-CCC-CC-ChhHHHHHHHHHH---------hcC
Q 012800 103 MLEMG-IPPDVWSYNSLMHCLFQLGKP--------DEANRVFQDMIC-GDL-TP-CTATFNIMLNGLC---------KNR 161 (456)
Q Consensus 103 ~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~---------~~~ 161 (456)
.+... .+|++..|...+....+.++. +...++|+..+. .|. .+ +...|...+.... ..+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 66543 125555665555544444432 223355555443 233 22 2345555554432 123
Q ss_pred ChHHHHHHHHHHHhCCCCCcHHHHHH---HHHHH----------HHcCCHHHHHHHHHHHhh--CCC----C--------
Q 012800 162 YTDNALRMFRGLQKHGFVPELVTYNI---LIKGL----------CKAGRLRTARWILKELGD--SGH----A-------- 214 (456)
Q Consensus 162 ~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~----------~~~~~~~~a~~~~~~~~~--~~~----~-------- 214 (456)
+.+.+..+|+.........-..+|.. +.... -...+++.|...+..+.. .++ +
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence 34556666666654211111122211 11110 001123334444443221 011 0
Q ss_pred ---C--C------HHHHHHHHHHHHhcC-------chhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHH-HHH
Q 012800 215 ---P--N------AITYTTIMKCCFRNR-------KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT-DYM 275 (456)
Q Consensus 215 ---~--~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~ 275 (456)
| + ...|...+..-...+ ..+.+..+|++++... +.....|...+..+...|+.++|. .++
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1 0 123444443322222 1233556788777664 557777777788788888888886 999
Q ss_pred HHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CCcC------------HHhHHHHHHHHHh
Q 012800 276 EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG---------FECD------------KYTHTILIDGLCK 334 (456)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~l~~~~~~ 334 (456)
+..... .+.+...|...+...-..|++++|..+|+.+.... ..|+ ..+|...+....+
T Consensus 368 ~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR 446 (679)
T 4e6h_A 368 KLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR 446 (679)
T ss_dssp HHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH
Confidence 988875 44567777778888888999999999999887531 0131 2357777777778
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHH
Q 012800 335 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG-KIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKL 410 (456)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~ 410 (456)
.|+.+.|..+|..+.+.........|...+..-.+.| +.+.|.++|+...+. ++..|...+......|+.+.|..+
T Consensus 447 ~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~l 526 (679)
T 4e6h_A 447 IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSL 526 (679)
T ss_dssp HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHH
Confidence 8889999999999887511223445544444444544 489999999988776 667777888888888999999999
Q ss_pred HHHHHHcCCCC--CHHhHHHHHHHHHccCChHHHHHHHHHHHhcccC
Q 012800 411 LLSCLKSGVRI--LKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 455 (456)
Q Consensus 411 ~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 455 (456)
|++++.....+ ....|..++..-...|+.+.+.++.+++.+..+.
T Consensus 527 feral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 527 FESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99998764322 3457778888888899999999999999887654
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.77 E-value=9.1e-17 Score=130.20 Aligned_cols=199 Identities=13% Similarity=-0.004 Sum_probs=136.9
Q ss_pred CcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 012800 249 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 328 (456)
Q Consensus 249 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 328 (456)
|++...+..+...+...|++++|...+++.++..+. +...+..+..++.+.|++++|...+++..+..+ .+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence 445556666677777777777777777777766433 666777777777777777777777777776532 255667777
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC--ChhhHHHHH
Q 012800 329 IDGLCKA-----------GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--DSFTYSSMV 395 (456)
Q Consensus 329 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~ 395 (456)
...+... |++++|...++++.+.. |.+...+..+..++...|++++|+..|+++... ++..+..++
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 7777777 88888888888888763 556778888888888888888888888876654 677788888
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 012800 396 HNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 451 (456)
Q Consensus 396 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 451 (456)
.++...|++++|+..|+++++..+. +...+..++.++...|++++|+..+++...
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC----------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 8888889999999999988877543 677888888888899999999888887653
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.77 E-value=6.6e-17 Score=131.03 Aligned_cols=199 Identities=10% Similarity=-0.018 Sum_probs=128.3
Q ss_pred CCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHH
Q 012800 4 KLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSL 83 (456)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (456)
|+++..+..+...+.+.|++++|+..|+++++..+. +...+..+..++.+.|++++|+..|++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 677788888888888999999999999988887653 77788888888888899999998888888764 3356677777
Q ss_pred HHHHHcC-----------CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH
Q 012800 84 IAGATRN-----------SLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNI 152 (456)
Q Consensus 84 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 152 (456)
..++... |++++|++.+++..+..+. +...+..+..++...|++++|+..|++..+.+ .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7777777 6666666666666664322 45556666666666666666666666666554 45556666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012800 153 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 208 (456)
Q Consensus 153 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 208 (456)
+..++...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666666665542 234555555666666666666666655543
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.6e-16 Score=131.70 Aligned_cols=228 Identities=14% Similarity=0.078 Sum_probs=152.8
Q ss_pred CchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCC--CC----Hh
Q 012800 5 LSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGIS--PD----VV 78 (456)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~ 78 (456)
..+..|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|.+.++.+.+.... ++ ..
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 456778888888888888888888888888876 57778888888888888888888888887764211 11 46
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 012800 79 TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLC 158 (456)
Q Consensus 79 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 158 (456)
++..+...+...|++++|.+.+++..+.. |+. ..+...|++++|...++.+.... +.+...+..+...+.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHH
Confidence 67777777778888888888887777743 332 23555566777777777766654 344556666666666
Q ss_pred hcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHH
Q 012800 159 KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 238 (456)
Q Consensus 159 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 238 (456)
..|++++|...++++.+.. +.+...+..+..++...|++++|...++....... .+...+..+..++...|++++|..
T Consensus 151 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHH
Confidence 7777777777776666542 23455666666666666666666666666655322 245555555566666666666666
Q ss_pred HHHHHHHc
Q 012800 239 ILSAMKRK 246 (456)
Q Consensus 239 ~~~~~~~~ 246 (456)
.++.+.+.
T Consensus 229 ~~~~a~~~ 236 (258)
T 3uq3_A 229 TLDAARTK 236 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66555543
No 42
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.76 E-value=1.4e-13 Score=128.48 Aligned_cols=425 Identities=10% Similarity=0.011 Sum_probs=296.4
Q ss_pred CCCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCC---hhHHHHHHHHHHhCC-CCCCHh
Q 012800 3 GKLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVS---FDAGYTILNRMREAG-ISPDVV 78 (456)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~ 78 (456)
.|-|...|..+++.+.+.++++.+..+|++++..- +.+...|...+..-.+.++ ++.+.++|++..... .+|++.
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 46789999999999999999999999999999885 4577889999999888898 999999999998763 137888
Q ss_pred HHHHHHHHHHcCCCh--------hHHHHHHHHHHHC-CC-CCC-HHhHHHHHHHHHh---------cCChhHHHHHHHHH
Q 012800 79 TYNSLIAGATRNSLL--------SCSLDLLDEMLEM-GI-PPD-VWSYNSLMHCLFQ---------LGKPDEANRVFQDM 138 (456)
Q Consensus 79 ~~~~l~~~~~~~~~~--------~~a~~~~~~~~~~-~~-~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 138 (456)
.|...+....+.++. +...++|+..... |. .++ ...|...+..... .++++.+..+|+++
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 888888776665543 3344777776543 55 443 5677777765442 34577899999999
Q ss_pred HhCCCCCChhHHHHHHHHHHh-------------cCChHHHHHHHHHHHhC--CC----C-----------C-----c--
Q 012800 139 ICGDLTPCTATFNIMLNGLCK-------------NRYTDNALRMFRGLQKH--GF----V-----------P-----E-- 181 (456)
Q Consensus 139 ~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~--~~----~-----------~-----~-- 181 (456)
+......-..+|......-.. ..+++.|...+.++... ++ + | +
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 854222223344322221111 11233444455443211 11 1 1 0
Q ss_pred -HHHHHHHHHHHHHcC-------CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHH-HHHHHHHHcCCCcCh
Q 012800 182 -LVTYNILIKGLCKAG-------RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGL-EILSAMKRKGYTFDG 252 (456)
Q Consensus 182 -~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~ 252 (456)
...|...+..--..+ ..+.+..+|+++.... +-....|...+..+...|+.+.|. .++++..... |.+.
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~ 378 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSA 378 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCH
Confidence 133444443322222 1344567788877653 337888888888888899999996 9999998764 5566
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC---------cc------------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012800 253 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGV---------QL------------DIVSYNTLINLYCKEGKLEAAYLLLD 311 (456)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~ 311 (456)
..+...+......|+++.|..+|+.++.... .| ...+|...+....+.|+.+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6677788888899999999999999886410 12 23467777888888999999999999
Q ss_pred HHHHcCCCcCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccCC---
Q 012800 312 EMEKQGFECDKYTHTILIDGLCKA-GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD--- 387 (456)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--- 387 (456)
...+....+....|...+..-.+. ++.+.|..+|+..++. ++.+...+..++......|+.+.|..+|+++....
T Consensus 459 ~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 459 KCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp HHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 998751122344554444433444 4589999999999886 56677888888998889999999999999988763
Q ss_pred ---hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 012800 388 ---SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 433 (456)
Q Consensus 388 ---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 433 (456)
...|...+..-.+.|+.+.+.++.+++.+.-+. ......+..-|
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~--~~~~~~f~~ry 584 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE--VNKLEEFTNKY 584 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT--CCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CcHHHHHHHHh
Confidence 357888888888899999999999999988443 33333444433
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.75 E-value=7.9e-16 Score=129.87 Aligned_cols=244 Identities=11% Similarity=0.025 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChh----hHHHHH
Q 012800 184 TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF----GYCTVI 259 (456)
Q Consensus 184 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~ 259 (456)
.+......+...|++++|...++++.+..+. +...+..+..++...|++++|...++++.+. +++.. .+..+.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSK--VNATKAKSADFEYYG 81 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT--SCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--cCchhHHHHHHHHHH
Confidence 3445566777778888888888877765432 4456667777777788888888888777763 22322 366777
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHH
Q 012800 260 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 339 (456)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 339 (456)
.++...|++++|...+++..+..+. +..++..+...|...|++++|...+++..+.. +.+...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 7777778888888888777775333 55677777777777888888887777776652 224556666663344445777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHhccC-----C------hhhHHHHHHHHHccCChh
Q 012800 340 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK---IDHAINVFESMEVK-----D------SFTYSSMVHNLCKAKRLP 405 (456)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~-----~------~~~~~~l~~~~~~~~~~~ 405 (456)
+|...++++.+.. +.+...+..+..++...|+ +++|...++++... + ..+|..++..|...|+++
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 7877777777653 4446666667777776666 66677777665543 1 145666777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 012800 406 SASKLLLSCLKSGVRILKSAQKAVVDGLR 434 (456)
Q Consensus 406 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 434 (456)
+|.+.++++++..+. ++..+..+.....
T Consensus 239 ~A~~~~~~al~~~p~-~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 239 KADAAWKNILALDPT-NKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHC----
T ss_pred HHHHHHHHHHhcCcc-HHHHHHHhhhhhc
Confidence 777777777766432 5555555544443
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.75 E-value=7.4e-16 Score=134.92 Aligned_cols=252 Identities=11% Similarity=0.080 Sum_probs=186.8
Q ss_pred CCCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCC-hhHHHHHHHHHHhCCCCCCHhHHH
Q 012800 3 GKLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVS-FDAGYTILNRMREAGISPDVVTYN 81 (456)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~ 81 (456)
.|-++.+|..+...+...|++++|+..++++++..+. +..+|+.+..++...|+ +++|+..|+++.+.. +-+...|.
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~ 170 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWH 170 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHH
Confidence 3445677888888888889999999999998887754 77788888888888886 999999998888764 33677888
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHh-c
Q 012800 82 SLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCK-N 160 (456)
Q Consensus 82 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 160 (456)
.+..++...|++++|+..|+++++.... +...|..+..++...|++++|+..|++++..+ +.+...|+.+..++.. .
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence 8888888888899999988888887544 77888888888888888888988888888776 5677888888888888 5
Q ss_pred CChHHH-----HHHHHHHHhCCCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC--
Q 012800 161 RYTDNA-----LRMFRGLQKHGFVPELVTYNILIKGLCKAG--RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR-- 231 (456)
Q Consensus 161 ~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 231 (456)
|..++| +..+++..... +-+...|..+..++...| ++++|.+.+..+ .. .+.+...+..+..++...+
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcc
Confidence 555666 47777777652 335667777777777766 577777777776 32 2335666777777776653
Q ss_pred -------chhHHHHHHHHH-HHcCCCcChhhHHHHHHHH
Q 012800 232 -------KYKLGLEILSAM-KRKGYTFDGFGYCTVIAAF 262 (456)
Q Consensus 232 -------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 262 (456)
..++|..+++++ .+.+ +.....|..+...+
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 247777777777 5443 33444454444433
No 45
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=162.02 Aligned_cols=149 Identities=13% Similarity=0.137 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHh---cCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHH
Q 012800 8 RLLNICVCTFCKANRLEKAEAIIIDGIR---LGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLI 84 (456)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 84 (456)
.+||++|++|++.|++++|.++|++|.+ .|+.||+.+||.||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 5799999999999999999999988763 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCh-hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC------hhHHHHHHHHH
Q 012800 85 AGATRNSLL-SCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPC------TATFNIMLNGL 157 (456)
Q Consensus 85 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~ 157 (456)
.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+. .+++..+++ .-+..|+ ..+...|.+.|
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHHH
Confidence 999999985 78899999999999999999999888655543 344444444 2233332 33444455555
Q ss_pred HhcC
Q 012800 158 CKNR 161 (456)
Q Consensus 158 ~~~~ 161 (456)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 5544
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.75 E-value=8.4e-15 Score=123.56 Aligned_cols=223 Identities=9% Similarity=-0.016 Sum_probs=168.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHHHcCCCcChhhHH
Q 012800 181 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR----NRKYKLGLEILSAMKRKGYTFDGFGYC 256 (456)
Q Consensus 181 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 256 (456)
+..++..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5666777778888888888888888887772 345667777777777 888888888888887765 566777
Q ss_pred HHHHHHHH----cCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 012800 257 TVIAAFVK----IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK----EGKLEAAYLLLDEMEKQGFECDKYTHTIL 328 (456)
Q Consensus 257 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 328 (456)
.+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 888888888888887763 56677777778877 788888888888887754 45566677
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHhccC-ChhhHHHHHHHHH
Q 012800 329 IDGLCK----AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK----DGKIDHAINVFESMEVK-DSFTYSSMVHNLC 399 (456)
Q Consensus 329 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~ 399 (456)
...+.. .+++++|...+++..+.+ +...+..+..+|.. .+++++|.+.|+++... ++..+..+...|.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 777776 778888888888877754 45667777777777 78888888888877666 5667777777777
Q ss_pred c----cCChhHHHHHHHHHHHcC
Q 012800 400 K----AKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 400 ~----~~~~~~A~~~~~~~~~~~ 418 (456)
. .+++++|.+.++++.+.+
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHHHHcC
Confidence 7 778888888888887765
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.75 E-value=9.2e-16 Score=129.46 Aligned_cols=237 Identities=10% Similarity=-0.030 Sum_probs=149.9
Q ss_pred chHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC--HhHHHHH
Q 012800 6 STRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPD--VVTYNSL 83 (456)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 83 (456)
|+..+......+...|++++|+..|+++++..+. +...+..+..++...|++++|++.++.+.+.+..++ ..+|..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 3445666777788888888888888888877643 555777788888888888888888888877421111 2336777
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCh
Q 012800 84 IAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYT 163 (456)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (456)
...+...|++++|.+.+++..+.... +..++..+..+|...|++++|.+.|++..... +.+...+..+...+...+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHH
Confidence 77788888888888888887775433 55677777777777888888888777777653 44556666666333344577
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhCC-CCCC------HHHHHHHHHHHHhcCch
Q 012800 164 DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR---LRTARWILKELGDSG-HAPN------AITYTTIMKCCFRNRKY 233 (456)
Q Consensus 164 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~~ 233 (456)
++|...++++.+.. +.+...+..+..++...|+ +++|...++++.+.. ..|+ ..++..+...+...|++
T Consensus 159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 77777777776652 2245555556666666565 555555555544321 0111 13344455555555555
Q ss_pred hHHHHHHHHHHHc
Q 012800 234 KLGLEILSAMKRK 246 (456)
Q Consensus 234 ~~a~~~~~~~~~~ 246 (456)
++|...++++.+.
T Consensus 238 ~~A~~~~~~al~~ 250 (272)
T 3u4t_A 238 VKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 5555555555544
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.74 E-value=1.8e-14 Score=121.58 Aligned_cols=226 Identities=10% Similarity=-0.067 Sum_probs=179.0
Q ss_pred CCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHc----cCChhHHHHHHHHHHhCCCCCCHhH
Q 012800 4 KLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQ----FVSFDAGYTILNRMREAGISPDVVT 79 (456)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 79 (456)
|.++.++..+...+...|++++|+..|+++.+. .+..++..+...+.. .+++++|...|++..+.+ +...
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 557788888888899999999999999998873 355677888888888 889999999999888864 6777
Q ss_pred HHHHHHHHHc----CCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChhHHH
Q 012800 80 YNSLIAGATR----NSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQ----LGKPDEANRVFQDMICGDLTPCTATFN 151 (456)
Q Consensus 80 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 151 (456)
+..+...+.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 8888888888 889999999998888864 67778888888888 888888988888888765 456677
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 012800 152 IMLNGLCK----NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK----AGRLRTARWILKELGDSGHAPNAITYTTI 223 (456)
Q Consensus 152 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 223 (456)
.+...+.. .+++++|+..+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 77777777 788888888888887763 45667777778888 888888888888877753 25566667
Q ss_pred HHHHHh----cCchhHHHHHHHHHHHcC
Q 012800 224 MKCCFR----NRKYKLGLEILSAMKRKG 247 (456)
Q Consensus 224 ~~~~~~----~~~~~~a~~~~~~~~~~~ 247 (456)
..++.. .+++++|...+++..+.+
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 777777 778888888888777665
No 49
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=3.3e-18 Score=160.02 Aligned_cols=150 Identities=15% Similarity=0.179 Sum_probs=119.0
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHHHh---CCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 012800 42 VVTYNMLIDAYCQFVSFDAGYTILNRMRE---AGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSL 118 (456)
Q Consensus 42 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 118 (456)
..+|+++|.+|++.|+.++|.++|+.|.+ .|+.||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34799999999999999999999988764 478899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCh-hHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc------HHHHHHHHHH
Q 012800 119 MHCLFQLGKP-DEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE------LVTYNILIKG 191 (456)
Q Consensus 119 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~ 191 (456)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+. .+++..+++ ..++.|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 9999999985 78899999999999999999999888655443 344444444 2233333 3333445555
Q ss_pred HHHcC
Q 012800 192 LCKAG 196 (456)
Q Consensus 192 ~~~~~ 196 (456)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 55444
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.72 E-value=2.7e-15 Score=131.35 Aligned_cols=228 Identities=9% Similarity=0.006 Sum_probs=135.2
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCccCHHHHHHHHHHH
Q 012800 219 TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR-LKEATDYMEQMVTDGVQLDIVSYNTLINLY 297 (456)
Q Consensus 219 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (456)
.+..+..++...|++++|+..++++++.. +.+...|..+..++...|+ +++|+..+++++..++. +...|..+..++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 34445555556666666666666666554 4455556666666666664 66666666666665433 556666666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-CCCHHHH
Q 012800 298 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK-DGKIDHA 376 (456)
Q Consensus 298 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a 376 (456)
...|++++|+..++++.+.... +...|..+..++...|++++|+..++++++.. +.+...|..+..++.+ .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 6666666666666666655322 55566666666666666666666666666653 4455666666666666 4443555
Q ss_pred -----HHHHHHhccC---ChhhHHHHHHHHHccC--ChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccC--------C
Q 012800 377 -----INVFESMEVK---DSFTYSSMVHNLCKAK--RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG--------C 438 (456)
Q Consensus 377 -----~~~~~~~~~~---~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~ 438 (456)
++.++++... +...|..+..++...| ++++|++.++++ +.. +.+...+..++.+|.+.| +
T Consensus 255 ~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchHH
Confidence 3555555443 4556666666666655 466666666665 332 235566666666666653 2
Q ss_pred -hHHHHHHHHHH-Hhc
Q 012800 439 -RREAKKIQSKI-RMA 452 (456)
Q Consensus 439 -~~~A~~~~~~~-~~~ 452 (456)
.++|.++++++ .+.
T Consensus 333 ~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 333 ILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 36677777666 443
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.72 E-value=1.3e-14 Score=118.50 Aligned_cols=205 Identities=11% Similarity=0.019 Sum_probs=149.0
Q ss_pred CCCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHH
Q 012800 3 GKLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNS 82 (456)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (456)
+|.++..+..+...+...|++++|.+.++.+.+..+ .+...+..+..++...|++++|.+.++++.+.. +.+..++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 81 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNN 81 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHH
Confidence 455677888888888888888888888888887764 367778888888888888888888888887753 335667777
Q ss_pred HHHHHHcC-CChhHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Q 012800 83 LIAGATRN-SLLSCSLDLLDEMLEMGIPP-DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKN 160 (456)
Q Consensus 83 l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 160 (456)
+...+... |++++|.+.++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+...
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHc
Confidence 77888888 88888888888877732222 35667777777788888888888887777654 44566777777777777
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 012800 161 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 210 (456)
Q Consensus 161 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 210 (456)
|++++|...++++.+.....+...+..+...+...|+.+.+..+++.+..
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 77777777777776652213555666666666777777777777776654
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.72 E-value=1.5e-15 Score=128.39 Aligned_cols=241 Identities=9% Similarity=-0.121 Sum_probs=147.0
Q ss_pred CCHHHHHHHHHHHhhCCCC---CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHH
Q 012800 196 GRLRTARWILKELGDSGHA---PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 272 (456)
Q Consensus 196 ~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 272 (456)
|++++|...++++.+.... .+..++..+..++...|++++|...++++.+.. +.+...+..+..++...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 4555555555555543211 123445555566666666666666666666554 445556666666666677777777
Q ss_pred HHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 012800 273 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 352 (456)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 352 (456)
..++++.+..+. +...+..+...|...|++++|...++++.+.. |+.......+..+...|++++|...++......
T Consensus 98 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 777666664322 45666677777777777777777777776642 333333333334455677777777776666542
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccCC-------hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHh
Q 012800 353 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD-------SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA 425 (456)
Q Consensus 353 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 425 (456)
+++...+ .++..+...++.++|.+.+.++...+ ...+..++..+...|++++|...++++++.. |+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~-- 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN-- 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--
Confidence 3333333 35566667777777777777766651 4677778888888888888888888887653 321
Q ss_pred HHHHHHHHHccCChHHHHHHH
Q 012800 426 QKAVVDGLRHSGCRREAKKIQ 446 (456)
Q Consensus 426 ~~~l~~~~~~~g~~~~A~~~~ 446 (456)
+.....++...|++++|.+.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 223355667778888877765
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.71 E-value=6.8e-15 Score=122.57 Aligned_cols=202 Identities=12% Similarity=-0.016 Sum_probs=137.7
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 012800 42 VVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHC 121 (456)
Q Consensus 42 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 121 (456)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 4556666777777777777777777776653 33566667777777777777777777777766542 256666777777
Q ss_pred HHhcCChhHHHHHHHHHHhCCC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHH
Q 012800 122 LFQLGKPDEANRVFQDMICGDL-TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 200 (456)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 200 (456)
+...|++++|.+.++++...+. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777766222 2345566667777777777777777777776652 3356667777777777777777
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcC
Q 012800 201 ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 247 (456)
Q Consensus 201 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 247 (456)
|...++.+..... .+...+..+...+...|++++|...++.+.+..
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 7777777766433 355666667777777777777777777777663
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.71 E-value=8.3e-15 Score=122.06 Aligned_cols=198 Identities=10% Similarity=-0.037 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHH
Q 012800 217 AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 296 (456)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 296 (456)
...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 4455666666677777777777777766654 44556666666667777777777777776666532 255666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 012800 297 YCKEGKLEAAYLLLDEMEKQGFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 375 (456)
Q Consensus 297 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 375 (456)
|...|++++|...++++...+..| +...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777666522223 34455666666666777777777777666553 3445666666666666666666
Q ss_pred HHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 012800 376 AINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 417 (456)
Q Consensus 376 a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 417 (456)
|...++++... +...+..++..+...|++++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666665543 4455566666666666666666666666655
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.71 E-value=1.9e-15 Score=127.75 Aligned_cols=245 Identities=10% Similarity=-0.064 Sum_probs=122.1
Q ss_pred CChHHHHHHHHHHHhCCC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHH
Q 012800 161 RYTDNALRMFRGLQKHGF---VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGL 237 (456)
Q Consensus 161 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 237 (456)
|++++|+..++++.+... +.+...+..+...+...|++++|...|+++....+ .+..++..+..++...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHH
Confidence 344445555544444311 01233444444555555555555555555444322 13444555555555555555555
Q ss_pred HHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012800 238 EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 317 (456)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 317 (456)
..++++.+.. +.+...+..+..++...|++++|...++++.+.. |+.......+..+...|++++|...++......
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 5555555543 3344555555555556666666666665555532 222222222333344566666666665555432
Q ss_pred CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHhccCChhhHHHH
Q 012800 318 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD---SNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSM 394 (456)
Q Consensus 318 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 394 (456)
+++... ..++..+...++.++|...++.+...... .+...+..++.++.+.|++++|...|+++...++..+...
T Consensus 175 -~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 252 (275)
T 1xnf_A 175 -DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 252 (275)
T ss_dssp -CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred -CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH
Confidence 122222 23444455555566666666655443100 0135566666666677777777777776666655445555
Q ss_pred HHHHHccCChhHHHHHH
Q 012800 395 VHNLCKAKRLPSASKLL 411 (456)
Q Consensus 395 ~~~~~~~~~~~~A~~~~ 411 (456)
..++...|++++|++.+
T Consensus 253 ~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 253 RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhhHHHH
Confidence 55666666666666554
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.71 E-value=1.4e-15 Score=125.98 Aligned_cols=200 Identities=14% Similarity=0.070 Sum_probs=89.0
Q ss_pred chHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 012800 6 STRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIA 85 (456)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (456)
++..|..+...+...|++++|...|+++.+..+ .+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 344455555555555555555555555555432 244455555555555555555555555555442 223444555555
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHH
Q 012800 86 GATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDN 165 (456)
Q Consensus 86 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 165 (456)
.+...|++++|.+.++++.+... .+...+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 55555555555555555554432 234444555555555555555555555554433 3334444444555555555555
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 012800 166 ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 210 (456)
Q Consensus 166 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 210 (456)
|...++++.+.. +.+..++..+..++...|++++|...++++.+
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 555555544431 22334444444444444444444444444443
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.70 E-value=1.1e-14 Score=118.90 Aligned_cols=196 Identities=8% Similarity=-0.065 Sum_probs=87.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh
Q 012800 255 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 334 (456)
Q Consensus 255 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 334 (456)
+..+...+...|++++|...++.+.+... .+...+..+...+...|++++|...++++.+.. +.+..++..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 33344444444444444444444443321 133344444444444444444444444444332 1133344444444444
Q ss_pred c-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHH
Q 012800 335 A-GNIKGARLHLEYMNKIGFDS-NLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASK 409 (456)
Q Consensus 335 ~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~ 409 (456)
. |++++|...++.+.+.+..| +...+..++.++...|++++|.+.++++... +...+..++.++...|++++|.+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 4 44444444444444411111 1334444444444555555555555444332 33444445555555555555555
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhc
Q 012800 410 LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 452 (456)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 452 (456)
.++++++..+..+...+..+...+...|+.++|..+++.+.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 169 YFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 5555544432124444444444455555555555555554443
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.70 E-value=2.2e-15 Score=124.80 Aligned_cols=209 Identities=14% Similarity=0.100 Sum_probs=125.3
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 012800 216 NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 295 (456)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 295 (456)
....+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+... .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 33445555556666666666666666666543 44555666666666677777777777776666532 25566666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 012800 296 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 375 (456)
Q Consensus 296 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 375 (456)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777776653 2255666667777777777777777777766653 4456667777777777777777
Q ss_pred HHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHH
Q 012800 376 AINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 429 (456)
Q Consensus 376 a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 429 (456)
|.+.++++... +..++..++.++...|++++|.+.++++++..+. +...+..+
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~ 233 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHHHH
Confidence 77777766544 5566777777777788888888888877766433 44444433
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.68 E-value=4.6e-15 Score=132.98 Aligned_cols=298 Identities=12% Similarity=0.007 Sum_probs=148.9
Q ss_pred CHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCC
Q 012800 76 DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPD----VWSYNSLMHCLFQLGKPDEANRVFQDMICG----DL-TPC 146 (456)
Q Consensus 76 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~ 146 (456)
....+......+...|++++|...++++.+.+.. + ..++..+...+...|++++|...+++.... +. +..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3344445555566666666666666666554321 2 234555555566666666666666554321 10 111
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 012800 147 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 226 (456)
Q Consensus 147 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 226 (456)
..++..+...+...|++++|...+++..+.. |.. ........++..+...
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~----------------------------~~~~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDIS--REL----------------------------NDKVGEARALYNLGNV 136 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------------------------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--Hhc----------------------------ccccchHHHHHHHHHH
Confidence 2344444455555555555555555443320 000 0000012233344444
Q ss_pred HHhcCc--------------------hhHHHHHHHHHHHc----C-CCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012800 227 CFRNRK--------------------YKLGLEILSAMKRK----G-YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 281 (456)
Q Consensus 227 ~~~~~~--------------------~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 281 (456)
+...|+ +++|...+.+..+. + .+....++..+...+...|++++|...+++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 444444 45555444444322 1 0111234555556666666666666666665542
Q ss_pred C-----CccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----Cc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012800 282 G-----VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF----EC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKI 351 (456)
Q Consensus 282 ~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (456)
. ......++..+...|...|++++|...+++...... .+ ...++..+...+...|++++|...++.+...
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 1 011123556666667777777777777766553210 00 1345566666677777777777777666543
Q ss_pred CC-CCC----HHHHHHHHHHHHhCCCHHHHHHHHHHhccC---------ChhhHHHHHHHHHccCCh
Q 012800 352 GF-DSN----LEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRL 404 (456)
Q Consensus 352 ~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~ 404 (456)
.. .++ ..++..+..+|...|++++|.+.++++... ...++..+...+...|+.
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 10 011 345566666677777777777777665443 233455555566555554
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.68 E-value=3e-15 Score=134.47 Aligned_cols=269 Identities=13% Similarity=0.058 Sum_probs=136.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHhhC----C-CCCCHH
Q 012800 148 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPEL----VTYNILIKGLCKAGRLRTARWILKELGDS----G-HAPNAI 218 (456)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 218 (456)
..+..+...+...|++++|+..|+++.+.+.. +. ..+..+...+...|++++|...+++.... + ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34445556677777777777777777665221 22 35666677777777777777777765431 1 111234
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHcC-----CCcChhhHHHHHHHHHHcCC-----------------hHHHHHHHH
Q 012800 219 TYTTIMKCCFRNRKYKLGLEILSAMKRKG-----YTFDGFGYCTVIAAFVKIGR-----------------LKEATDYME 276 (456)
Q Consensus 219 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 276 (456)
.+..+...+...|++++|...++++.+.. .+....++..+...+...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 45556666666667777666666655431 11123344555555556666 555555555
Q ss_pred HHHHC----C-CccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-cC----HHhHHHHHHHHHhcCCHHHHHHHHH
Q 012800 277 QMVTD----G-VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-CD----KYTHTILIDGLCKAGNIKGARLHLE 346 (456)
Q Consensus 277 ~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 346 (456)
+..+. + .......+..+...|...|++++|...+++..+.... ++ ..++..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 54432 0 1112234445555555555555555555555432100 01 1144445555555555555555555
Q ss_pred HHHhCCC--C---CCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---------ChhhHHHHHHHHHccCChhHHHHHHH
Q 012800 347 YMNKIGF--D---SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRLPSASKLLL 412 (456)
Q Consensus 347 ~~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~ 412 (456)
++..... . ....++..+..++...|++++|.+.++++... ...++..++.+|...|++++|.+.++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 5443210 0 01234444444555555555555555544332 12234444445555555555555555
Q ss_pred HHHHc
Q 012800 413 SCLKS 417 (456)
Q Consensus 413 ~~~~~ 417 (456)
++++.
T Consensus 368 ~al~~ 372 (411)
T 4a1s_A 368 QHLQL 372 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.67 E-value=9.6e-15 Score=130.91 Aligned_cols=298 Identities=11% Similarity=0.003 Sum_probs=210.9
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCCC
Q 012800 144 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE----LVTYNILIKGLCKAGRLRTARWILKELGDS----GHAP 215 (456)
Q Consensus 144 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 215 (456)
......+......+...|++++|...|+++.+.+. .+ ...+..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 44556677788889999999999999999887632 23 356778888999999999999999886542 2111
Q ss_pred -CHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCC-c----ChhhHHHHHHHHHHcCC--------------------hH
Q 012800 216 -NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-F----DGFGYCTVIAAFVKIGR--------------------LK 269 (456)
Q Consensus 216 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~--------------------~~ 269 (456)
...++..+...+...|++++|...+++..+.... . ...++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2456777788888999999999999888754211 1 13467777788888888 88
Q ss_pred HHHHHHHHHHHC----C-CccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CcC----HHhHHHHHHHHHhcCCHH
Q 012800 270 EATDYMEQMVTD----G-VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF-ECD----KYTHTILIDGLCKAGNIK 339 (456)
Q Consensus 270 ~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~ 339 (456)
+|...+++.... + .+....++..+...|...|++++|...+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 888888876653 1 112244677788888888999999988888765311 112 236777788888889999
Q ss_pred HHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhCCCHHHHHHHHHHhccC---------ChhhHHHHHHHHHccCChh
Q 012800 340 GARLHLEYMNKIGF-DSN----LEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRLP 405 (456)
Q Consensus 340 ~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~ 405 (456)
+|...+++...... .++ ..++..+...+...|++++|.+.++++... ...++..++.+|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 99888888764310 011 456777888888888888888888877654 1456777888888888888
Q ss_pred HHHHHHHHHHHcCCCCC-----HHhHHHHHHHHHccCChHHH
Q 012800 406 SASKLLLSCLKSGVRIL-----KSAQKAVVDGLRHSGCRREA 442 (456)
Q Consensus 406 ~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A 442 (456)
+|.+.++++++...... ..++..++.++...|+...+
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 88888888886643322 22444555566655555443
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.66 E-value=9.9e-15 Score=131.11 Aligned_cols=274 Identities=14% Similarity=0.003 Sum_probs=204.1
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh----hHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCcH
Q 012800 112 VWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCT----ATFNIMLNGLCKNRYTDNALRMFRGLQKH----GF-VPEL 182 (456)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~ 182 (456)
...+..+...+...|++++|...|+++.+.+ +.+. ..+..+...+...|++++|+..+++..+. +. +...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 4445567778889999999999999988764 3333 46788888999999999999999887653 11 2235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhC----C-CCCCHHHHHHHHHHHHhcCc-----------------hhHHHHHH
Q 012800 183 VTYNILIKGLCKAGRLRTARWILKELGDS----G-HAPNAITYTTIMKCCFRNRK-----------------YKLGLEIL 240 (456)
Q Consensus 183 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 240 (456)
..+..+...+...|++++|...+.+.... + ......++..+...+...|+ +++|...+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 66778888999999999999999887652 1 11234467778888889999 89999888
Q ss_pred HHHHHc----CC-CcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCc-cC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 012800 241 SAMKRK----GY-TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ-LD----IVSYNTLINLYCKEGKLEAAYLLL 310 (456)
Q Consensus 241 ~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~ 310 (456)
++..+. +. +.....+..+...+...|++++|...+++..+.... ++ ...+..+...|...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 887643 11 122346777888899999999999999988764211 11 236778888999999999999999
Q ss_pred HHHHHcCCC-c----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 012800 311 DEMEKQGFE-C----DKYTHTILIDGLCKAGNIKGARLHLEYMNKI----GF-DSNLEAYNCIVDRLGKDGKIDHAINVF 380 (456)
Q Consensus 311 ~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~ 380 (456)
++....... . ...++..+...+...|++++|...+++.... +. ......+..+..+|...|++++|.+.+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 888753211 1 1456778888899999999999999987654 10 112457778888999999999999999
Q ss_pred HHhccC
Q 012800 381 ESMEVK 386 (456)
Q Consensus 381 ~~~~~~ 386 (456)
+++...
T Consensus 367 ~~al~~ 372 (411)
T 4a1s_A 367 EQHLQL 372 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988776
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.66 E-value=1.7e-14 Score=125.72 Aligned_cols=271 Identities=15% Similarity=0.053 Sum_probs=138.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCC-CCHHHH
Q 012800 150 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE----LVTYNILIKGLCKAGRLRTARWILKELGDS----GHA-PNAITY 220 (456)
Q Consensus 150 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 220 (456)
+......+...|++++|...++++.+... .+ ...+..+...+...|++++|...+++.... +.. ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 34445556666666666666666655421 12 244555566666666666666666554321 000 112333
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHcCCC-cChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh
Q 012800 221 TTIMKCCFRNRKYKLGLEILSAMKRKGYT-FDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 299 (456)
Q Consensus 221 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 299 (456)
..+...+...|++++|...+++..+.... .+ ......++..+...+..
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------------------~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELND-------------------------------KVGEARALYNLGNVYHA 135 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-------------------------------chHHHHHHHHHHHHHHH
Confidence 44444445555555555555444332100 00 00012234444444555
Q ss_pred cCC--------------------HHHHHHHHHHHHHc----CCC-cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 012800 300 EGK--------------------LEAAYLLLDEMEKQ----GFE-CDKYTHTILIDGLCKAGNIKGARLHLEYMNKI--- 351 (456)
Q Consensus 300 ~~~--------------------~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 351 (456)
.|+ +++|...+++.... +.. ....++..+...+...|++++|...++++.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 555 55555555443321 100 11234455555556666666666666655432
Q ss_pred -CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---------ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 012800 352 -GF-DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 420 (456)
Q Consensus 352 -~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 420 (456)
+. ......+..+...+...|++++|...++++... ...++..++..+...|++++|...++++++....
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 10 001224555556666666666666666655433 1345666667777777777777777776543111
Q ss_pred -----CCHHhHHHHHHHHHccCChHHHHHHHHHHHhc
Q 012800 421 -----ILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 452 (456)
Q Consensus 421 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 452 (456)
....++..++.++...|++++|...+++..+.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 11335666777777777777777777776654
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.66 E-value=2.8e-14 Score=112.53 Aligned_cols=164 Identities=15% Similarity=0.029 Sum_probs=93.5
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHH
Q 012800 251 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 330 (456)
Q Consensus 251 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 330 (456)
++.+|..+...+...|++++|...|++.++.++. +...+..+..+|...|++++|...+........ .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 3445555666666666666666666666555332 455556666666666666666666666555422 24445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHH
Q 012800 331 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSA 407 (456)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A 407 (456)
.+...++++.+...+.++.... +.+...+..+..++.+.|++++|++.|+++.+. ++.+|..++.+|.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 5556666666666666655542 444555555556666666666666666555443 445555556666666666666
Q ss_pred HHHHHHHHHc
Q 012800 408 SKLLLSCLKS 417 (456)
Q Consensus 408 ~~~~~~~~~~ 417 (456)
++.|+++++.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 6666665544
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.65 E-value=2.9e-13 Score=116.12 Aligned_cols=215 Identities=7% Similarity=-0.057 Sum_probs=104.8
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-------cCch-------hHHHHHHHHHHHcCCCcChhhHHHHHHHHHH
Q 012800 199 RTARWILKELGDSGHAPNAITYTTIMKCCFR-------NRKY-------KLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 264 (456)
Q Consensus 199 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 264 (456)
++|...|+++....+ .+...|..++..+.. .|++ ++|..+|++..+.-.+.+...+..++..+..
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 455555555554322 244455555544432 3443 5555555555552113334455555555555
Q ss_pred cCChHHHHHHHHHHHHCCCccCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHH-hcCCHHHHH
Q 012800 265 IGRLKEATDYMEQMVTDGVQLDIV-SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLC-KAGNIKGAR 342 (456)
Q Consensus 265 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~ 342 (456)
.|++++|..+|+++++..+. +.. .|..++..+.+.|++++|..+|++..+.+. ++...|...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555553211 222 455555555555555555555555554321 22333332222211 145555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC-------ChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 012800 343 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-------DSFTYSSMVHNLCKAKRLPSASKLLLSCL 415 (456)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 415 (456)
.+|+++++.. +.+...|..++..+.+.|++++|+.+|+++... ....|..++..+.+.|+.++|..++++++
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555432 334555555555555555555555555555441 22345555555555555555555555555
Q ss_pred Hc
Q 012800 416 KS 417 (456)
Q Consensus 416 ~~ 417 (456)
+.
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.65 E-value=1.7e-13 Score=121.74 Aligned_cols=229 Identities=10% Similarity=-0.045 Sum_probs=121.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCC------CcChhhHH
Q 012800 188 LIKGLCKAGRLRTARWILKELGDS----GHAP-NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY------TFDGFGYC 256 (456)
Q Consensus 188 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 256 (456)
....+...|++++|...+++.... +..+ ...++..+..++...|+++.|...+.+..+... +....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344455666666666666665442 1111 223455556666666666666666666554310 11123455
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC-----CccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CcCHHhHH
Q 012800 257 TVIAAFVKIGRLKEATDYMEQMVTDG-----VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ----GF-ECDKYTHT 326 (456)
Q Consensus 257 ~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 326 (456)
.+..+|...|++++|...+++..+.. ......++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 55666666666666666666655421 0111235556666666677777777666666541 11 22344566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHhccC--ChhhHHHHHHH
Q 012800 327 ILIDGLCKAGNIKGARLHLEYMNKI----GFDSNLEAYNCIVDRLGKDGK---IDHAINVFESMEVK--DSFTYSSMVHN 397 (456)
Q Consensus 327 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~--~~~~~~~l~~~ 397 (456)
.+...+...|++++|...+++..+. +-+.....+..+...+...|+ +++|..++++.... ....+..++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 6666666666666666666665432 111112223445555555565 55555555554322 23344555566
Q ss_pred HHccCChhHHHHHHHHHHH
Q 012800 398 LCKAKRLPSASKLLLSCLK 416 (456)
Q Consensus 398 ~~~~~~~~~A~~~~~~~~~ 416 (456)
|...|++++|.+.++++++
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6666666666666665543
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.64 E-value=3.4e-14 Score=123.74 Aligned_cols=275 Identities=11% Similarity=-0.023 Sum_probs=180.7
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CcH
Q 012800 112 VWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPC----TATFNIMLNGLCKNRYTDNALRMFRGLQKH----GFV-PEL 182 (456)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~ 182 (456)
...+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++..+. +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 3445566778899999999999999998864 333 367788899999999999999999987543 112 235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHhcCc--------------------hhHHH
Q 012800 183 VTYNILIKGLCKAGRLRTARWILKELGDSGH-APN----AITYTTIMKCCFRNRK--------------------YKLGL 237 (456)
Q Consensus 183 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~ 237 (456)
..+..+...+...|++++|...+.+...... .++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 6778888999999999999999998765211 112 2255566666666666 55555
Q ss_pred HHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012800 238 EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 317 (456)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 317 (456)
..+++.... ..... ........+..+...+...|++++|...+++..+..
T Consensus 164 ~~~~~a~~~----------------------------~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 213 (338)
T 3ro2_A 164 DLYEENLSL----------------------------VTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 213 (338)
T ss_dssp HHHHHHHHH----------------------------HHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----------------------------HHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 544443321 11000 011123345556666666677777766666654321
Q ss_pred C-----CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhCCCHHHHHHHHHHhccC-
Q 012800 318 F-----ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF-DSN----LEAYNCIVDRLGKDGKIDHAINVFESMEVK- 386 (456)
Q Consensus 318 ~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 386 (456)
. .....++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...++++...
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 214 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 0 00122566666677777777777777777654310 011 455666777778888888888888776543
Q ss_pred --------ChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 012800 387 --------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 417 (456)
Q Consensus 387 --------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 417 (456)
...++..++..+...|++++|.+.++++++.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1346777888888889999999998888765
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.64 E-value=1e-13 Score=109.25 Aligned_cols=167 Identities=12% Similarity=0.060 Sum_probs=141.2
Q ss_pred chHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 012800 6 STRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIA 85 (456)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (456)
++.+|..+...+.+.|++++|++.|+++++.++. +..++..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 5678889999999999999999999999988754 78888999999999999999999999888764 345667777888
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHH
Q 012800 86 GATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDN 165 (456)
Q Consensus 86 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 165 (456)
.+...++++.+.+.+.+....... +...+..+..++.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 888899999999999888876433 67788888888999999999999999888775 6677888888888999999999
Q ss_pred HHHHHHHHHhC
Q 012800 166 ALRMFRGLQKH 176 (456)
Q Consensus 166 a~~~~~~~~~~ 176 (456)
|+..|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999888875
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.63 E-value=6.1e-13 Score=114.10 Aligned_cols=238 Identities=8% Similarity=-0.034 Sum_probs=147.4
Q ss_pred CchHHHHHHHHHHHhh----CcH----HHHHHHHHHHHhcCCCCCHHhHHHHHHHHHc-------cCCh-------hHHH
Q 012800 5 LSTRLLNICVCTFCKA----NRL----EKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQ-------FVSF-------DAGY 62 (456)
Q Consensus 5 ~~~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~ 62 (456)
.+...|...+..-.+. ++. ++|+.+|+++++..+ .++..|..++..+.. .|++ ++|.
T Consensus 6 ~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~ 84 (308)
T 2ond_A 6 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHH
Confidence 3456777777665543 233 678888888887654 367777777777653 4665 7777
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012800 63 TILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVW-SYNSLMHCLFQLGKPDEANRVFQDMICG 141 (456)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 141 (456)
.+|++..+.-.+.+...|..++..+.+.|++++|.++|+++.+..+. +.. +|..++..+.+.|++++|..+|++..+.
T Consensus 85 ~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 85 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 77777776211234556777777777777777777777777764321 232 6777777777777777777777777765
Q ss_pred CCCCChhHHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC-CCC--CH
Q 012800 142 DLTPCTATFNIMLNGLC-KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG-HAP--NA 217 (456)
Q Consensus 142 ~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~ 217 (456)
+ +++...|........ ..|+.++|..+|++..+. .+.+...|..++..+.+.|++++|..+|++..... ..| ..
T Consensus 164 ~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~ 241 (308)
T 2ond_A 164 A-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 241 (308)
T ss_dssp T-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred C-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence 4 334444443332222 256777777777666554 22355566666666666666777776666666642 232 34
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHc
Q 012800 218 ITYTTIMKCCFRNRKYKLGLEILSAMKRK 246 (456)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 246 (456)
..|..++......|+.+.|..+++++.+.
T Consensus 242 ~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 242 EIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45555666666666666666666666654
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.62 E-value=1.6e-14 Score=131.42 Aligned_cols=189 Identities=13% Similarity=-0.033 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHHhcCch-hHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHH
Q 012800 216 NAITYTTIMKCCFRNRKY-KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 294 (456)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 294 (456)
+...+..+..++...|++ ++|...++++.+.. +.+...+..+..+|...|++++|...|++.++.. |+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHH
Confidence 444444455555555555 55555555555443 3334445555555555555555555555554432 3334444444
Q ss_pred HHHHhc---------CCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCC---
Q 012800 295 NLYCKE---------GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA--------GNIKGARLHLEYMNKIGFD--- 354 (456)
Q Consensus 295 ~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~--- 354 (456)
..|... |++++|...+++..+... .+...+..+..++... |++++|...|+++.+.. +
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcc
Confidence 455444 555555555555444321 1344444444444444 44555555555544431 2
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHH
Q 012800 355 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASK 409 (456)
Q Consensus 355 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~ 409 (456)
.+...+..+..+|...|++++|.+.|+++... +...+..+..++...|++++|++
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444444444444444444444444444332 33334444444444444444443
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.62 E-value=2.4e-13 Score=120.66 Aligned_cols=231 Identities=10% Similarity=-0.029 Sum_probs=145.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC----CCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC--C----CCCHHHHH
Q 012800 153 MLNGLCKNRYTDNALRMFRGLQKH----GFVP-ELVTYNILIKGLCKAGRLRTARWILKELGDSG--H----APNAITYT 221 (456)
Q Consensus 153 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 221 (456)
....+...|++++|+..+++..+. +-++ ...++..+...+...|++++|...+.+..... . .....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344555666666666666666543 1111 23456666666777777777777666654310 0 01134566
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHcCC-----CcChhhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCccCHHHHH
Q 012800 222 TIMKCCFRNRKYKLGLEILSAMKRKGY-----TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT-----DGVQLDIVSYN 291 (456)
Q Consensus 222 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 291 (456)
.+..+|...|++++|...+++..+... +....++..+..+|...|++++|...+++..+ ...+....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 666777777777777777777664411 11123566777888888888888888888776 33233466778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCcCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012800 292 TLINLYCKEGKLEAAYLLLDEMEKQ----GFECDKYTHTILIDGLCKAGN---IKGARLHLEYMNKIGFDSNLEAYNCIV 364 (456)
Q Consensus 292 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~ 364 (456)
.+...|...|++++|...+++..+. +.+.....+..+...+...|+ +++|..+++.... .+.....+..+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHHHHHHHH
Confidence 8888888888888888888877542 111122234566677777787 5666666665411 122345667788
Q ss_pred HHHHhCCCHHHHHHHHHHhcc
Q 012800 365 DRLGKDGKIDHAINVFESMEV 385 (456)
Q Consensus 365 ~~~~~~g~~~~a~~~~~~~~~ 385 (456)
..|...|++++|...++++..
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888888898888888887654
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.59 E-value=3.8e-14 Score=122.06 Aligned_cols=242 Identities=13% Similarity=0.056 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHc------C-
Q 012800 182 LVTYNILIKGLCKAGRLRTARWILKELGDS-------GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK------G- 247 (456)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~- 247 (456)
..++..+...+...|++++|..+++++... ........+..+...+...|++++|...++++.+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 445555666666666666666666655441 11122334444555555555555555555554432 1
Q ss_pred CCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHhHH
Q 012800 248 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC-DKYTHT 326 (456)
Q Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 326 (456)
.+.....+..+...+...|++++|...++++.+..... ..+..| ....+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-----------------------------~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV-----------------------------LGKDHPDVAKQLN 157 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH-----------------------------HCTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh-----------------------------cCCCChHHHHHHH
Confidence 11122334444444444455555555444444320000 001111 222344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC-------------
Q 012800 327 ILIDGLCKAGNIKGARLHLEYMNKI------GF-DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK------------- 386 (456)
Q Consensus 327 ~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------- 386 (456)
.+...+...|++++|..+++++.+. +. +.....+..+..++...|++++|.+.++++...
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 4444444555555555555444332 10 111233444445555555555555555544431
Q ss_pred -----ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhcc
Q 012800 387 -----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 453 (456)
Q Consensus 387 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 453 (456)
....+..+...+...+.+.+|...+++..... +.+..++..++.+|.+.|++++|.+++++..+..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 11122223334445566666666666665432 2345667777788888888888888887776543
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.57 E-value=4.6e-12 Score=112.14 Aligned_cols=226 Identities=12% Similarity=-0.007 Sum_probs=124.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCC-CC----CHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCC-----C-cChhhHHH
Q 012800 189 IKGLCKAGRLRTARWILKELGDSGH-AP----NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY-----T-FDGFGYCT 257 (456)
Q Consensus 189 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~~ 257 (456)
...+...|++++|...+++...... .+ ...++..+..++...|+++.|...+.+..+... . ....++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445566667777766666554211 01 123455566666666666666666666554310 0 11334555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC----C-CccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCcCHHhHHH
Q 012800 258 VIAAFVKIGRLKEATDYMEQMVTD----G-VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK-----QGFECDKYTHTI 327 (456)
Q Consensus 258 l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 327 (456)
+..++...|++++|...+++..+. + ......++..+..+|...|++++|...+++..+ .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 666666777777777766666542 1 111234556666677777777777777766654 22 222455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHhccC--ChhhHHHHHHHH
Q 012800 328 LIDGLCKAGNIKGARLHLEYMNKIG----FDSNLEAYNCIVDRLGKDGK---IDHAINVFESMEVK--DSFTYSSMVHNL 398 (456)
Q Consensus 328 l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~--~~~~~~~l~~~~ 398 (456)
+...+.+.|++++|...+++..+.. .+.....+..+...+...|+ +.+|+..+++.... ....+..++..|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 6667777777777777777765431 11112334444445555555 55555555553222 223444556666
Q ss_pred HccCChhHHHHHHHHHH
Q 012800 399 CKAKRLPSASKLLLSCL 415 (456)
Q Consensus 399 ~~~~~~~~A~~~~~~~~ 415 (456)
...|++++|.+.|++++
T Consensus 347 ~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66666666666666554
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.56 E-value=3.7e-13 Score=122.43 Aligned_cols=194 Identities=10% Similarity=-0.065 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 012800 147 TATFNIMLNGLCKNRYT-DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 225 (456)
Q Consensus 147 ~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 225 (456)
...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|...|++..+.. |+...+..+..
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~ 178 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSM 178 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHH
Confidence 33444444444444444 44444444443331 1123344444444444444444444444444322 23344444444
Q ss_pred HHHhc---------CchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc--------CChHHHHHHHHHHHHCCCc--cC
Q 012800 226 CCFRN---------RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI--------GRLKEATDYMEQMVTDGVQ--LD 286 (456)
Q Consensus 226 ~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~--~~ 286 (456)
++... |++++|...++++.+.. +.+...+..+..++... |++++|...|++..+..+. .+
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 257 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence 44444 44555555555544443 33344444444444444 4555555555555543220 24
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHH
Q 012800 287 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 345 (456)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 345 (456)
...+..+..+|...|++++|...|++..+... .+...+..+...+...|++++|...+
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555555555544321 13344444555555555555554443
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.55 E-value=3e-13 Score=116.34 Aligned_cols=242 Identities=14% Similarity=0.040 Sum_probs=173.7
Q ss_pred CCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhc-------CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhC-----
Q 012800 4 KLSTRLLNICVCTFCKANRLEKAEAIIIDGIRL-------GVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREA----- 71 (456)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 71 (456)
|.+..++..+...+...|++++|+.+++++.+. .......++..+...+...|++++|...+++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 456788999999999999999999999999874 23335668889999999999999999999988764
Q ss_pred -CC-CCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHC------CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-
Q 012800 72 -GI-SPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEM------GI-PPDVWSYNSLMHCLFQLGKPDEANRVFQDMICG- 141 (456)
Q Consensus 72 -~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 141 (456)
+. +....++..+...+...|++++|.+.+++..+. +. +.....+..+...+...|++++|.+.++++...
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 21 223567888999999999999999999998764 21 224566788899999999999999999998764
Q ss_pred -----C-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCcH-------HHHHHHHHHHHHcCCHHHH
Q 012800 142 -----D-LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH-------GFVPEL-------VTYNILIKGLCKAGRLRTA 201 (456)
Q Consensus 142 -----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-------~~~~~l~~~~~~~~~~~~a 201 (456)
+ .+....++..+..++...|++++|...++++.+. ...+.. ..+..+...+...+.+.++
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 1 1233567888899999999999999999998753 111111 1122222233334444555
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHc
Q 012800 202 RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 246 (456)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 246 (456)
...+....... +....++..+..+|...|++++|...+++..+.
T Consensus 264 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 264 GGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp C---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 55555554422 235667888999999999999999999988765
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.54 E-value=2.1e-11 Score=107.84 Aligned_cols=297 Identities=14% Similarity=0.032 Sum_probs=190.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC-CCCH----HHH
Q 012800 150 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPEL----VTYNILIKGLCKAGRLRTARWILKELGDSGH-APNA----ITY 220 (456)
Q Consensus 150 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~ 220 (456)
.......+...|++++|...+++........+. ..+..+...+...|++++|...+.+...... ..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344455667789999999999887775322222 2456666778888999999988887654211 1122 224
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHc----CCC--c-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC----ccCHHH
Q 012800 221 TTIMKCCFRNRKYKLGLEILSAMKRK----GYT--F-DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV----QLDIVS 289 (456)
Q Consensus 221 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~ 289 (456)
..+...+...|++++|...+++..+. +.+ | ....+..+...+...|++++|...+++...... ......
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 55667778888898888888887653 211 1 233455567778888888888888888776422 112456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC--HHhHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHH
Q 012800 290 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECD--KYTHT----ILIDGLCKAGNIKGARLHLEYMNKIGFDS---NLEAY 360 (456)
Q Consensus 290 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 360 (456)
+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...++........+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 67777888888888888888888765311111 11111 22334668888888888888876543111 12345
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhccC---------ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 012800 361 NCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 431 (456)
Q Consensus 361 ~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 431 (456)
..+...+...|++++|...++++... ....+..+..++...|++++|...+++.+....+ .....
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~------~g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR------TGFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------HCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc------ccHHH
Confidence 66777888888888888888876543 1135566677778888888888888888765211 11223
Q ss_pred HHHccCChHHHHHHHHHHHhccc
Q 012800 432 GLRHSGCRREAKKIQSKIRMAKI 454 (456)
Q Consensus 432 ~~~~~g~~~~A~~~~~~~~~~~~ 454 (456)
.+...| +....+++++....+
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHHcc--HHHHHHHHHHHhCCC
Confidence 344444 556666666655443
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.53 E-value=7.8e-12 Score=110.68 Aligned_cols=311 Identities=9% Similarity=-0.007 Sum_probs=135.4
Q ss_pred CchHHHHHHHHHH--HhhCcHHHHHHHHHHHHhcC--CC--CCHHhHHHHHHHH--HccCChhHHH---------HHHHH
Q 012800 5 LSTRLLNICVCTF--CKANRLEKAEAIIIDGIRLG--VL--PDVVTYNMLIDAY--CQFVSFDAGY---------TILNR 67 (456)
Q Consensus 5 ~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~--~~--~~~~~~~~l~~~~--~~~~~~~~a~---------~~~~~ 67 (456)
|+..+-+.+-++| ..++++++|..+++++.+.. .. ++...|..++..- .-.+.++.+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 4555666666676 77888888888888765532 11 1222333333321 1112222222 44444
Q ss_pred HHhCCCCCCH----hHHHHHHHHHHcCCChhHHHHHHHHHHHCC--CC---CCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 012800 68 MREAGISPDV----VTYNSLIAGATRNSLLSCSLDLLDEMLEMG--IP---PDVWSYNSLMHCLFQLGKPDEANRVFQDM 138 (456)
Q Consensus 68 ~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 138 (456)
+.....+.+. ..+......+...|++++|.+.+++..+.. .+ ....++..+...|...|+++.|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4321100010 011222333445566666666666555421 00 01234445555555556666555555554
Q ss_pred HhC----CC-C-CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 012800 139 ICG----DL-T-PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 212 (456)
Q Consensus 139 ~~~----~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 212 (456)
... +. . ....+++.+..+|...|++++|...+++..+.. ...+
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-------------------------------~~~~ 216 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA-------------------------------MDIQ 216 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHTT
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-------------------------------HHcC
Confidence 431 00 0 012344445555555555555555555443310 0000
Q ss_pred CC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHHH-----cCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC----
Q 012800 213 HA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKR-----KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG---- 282 (456)
Q Consensus 213 ~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 282 (456)
.. ....++..+..++...|++++|...+++..+ .. +....++..+..++.+.|++++|...+++..+..
T Consensus 217 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 295 (378)
T 3q15_A 217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS 295 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence 00 0112333444444444444444444444443 21 2223444445555555555555555555554421
Q ss_pred CccCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012800 283 VQLDIVSYNTLINLYCKEGK---LEAAYLLLDEMEKQGFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNK 350 (456)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 350 (456)
.+.....+..+...|...++ ..+|+..++.. +..| ....+..+...|...|++++|...++++.+
T Consensus 296 ~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 296 HKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11112233344444444455 44444444431 1111 223344555556666666666666655543
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.52 E-value=1.9e-12 Score=101.98 Aligned_cols=160 Identities=16% Similarity=0.040 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012800 290 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 369 (456)
Q Consensus 290 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 369 (456)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..++..+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3444444455555555555555444332 1234444445555555555555555555554432 3344445555555555
Q ss_pred CCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHH
Q 012800 370 DGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQ 446 (456)
Q Consensus 370 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 446 (456)
.|++++|.+.++++... +...+..++..+...|++++|.+.++++.+..+ .+...+..++.++...|++++|...+
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555544432 344455555555555666666666655555432 24555555556666666666666666
Q ss_pred HHHHhc
Q 012800 447 SKIRMA 452 (456)
Q Consensus 447 ~~~~~~ 452 (456)
+++.+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 555443
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.51 E-value=1.3e-12 Score=123.56 Aligned_cols=168 Identities=8% Similarity=-0.050 Sum_probs=152.2
Q ss_pred CCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHH
Q 012800 4 KLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSL 83 (456)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (456)
|-++.+|+.+...+.+.|++++|++.|+++++..+. +..+++.+..++.+.|++++|++.|++..+.. +-+...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 557889999999999999999999999999998754 78899999999999999999999999999874 3357899999
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCh
Q 012800 84 IAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYT 163 (456)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (456)
..++...|++++|++.|++..+.... +...+..+..+|...|++++|++.|++.++.. +.+...+..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 99999999999999999999987543 68899999999999999999999999999876 66788999999999999999
Q ss_pred HHHHHHHHHHHh
Q 012800 164 DNALRMFRGLQK 175 (456)
Q Consensus 164 ~~a~~~~~~~~~ 175 (456)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888765
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.51 E-value=1.3e-12 Score=123.56 Aligned_cols=162 Identities=13% Similarity=0.075 Sum_probs=88.8
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 012800 252 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 331 (456)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 331 (456)
...++.+..++.+.|++++|+..|++.++.... +...+..+..+|.+.|++++|+..|++..+.... +...+..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 445555555555666666666666555554322 4555555555555666666666666555554211 34455555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHH
Q 012800 332 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSAS 408 (456)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~ 408 (456)
+...|++++|+..|+++++.. +.+...+..+..+|.+.|++++|++.|+++.+. +...+..++.++...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 555566666665555555542 334555555555555555555555555555443 4445555555555555555555
Q ss_pred HHHHHHHH
Q 012800 409 KLLLSCLK 416 (456)
Q Consensus 409 ~~~~~~~~ 416 (456)
+.++++++
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.51 E-value=2.7e-11 Score=107.09 Aligned_cols=202 Identities=9% Similarity=-0.019 Sum_probs=117.7
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHH----hHHHHHHHHHccCChhHHHHHHHHHHhCCC-CCC----HhH
Q 012800 9 LLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVV----TYNMLIDAYCQFVSFDAGYTILNRMREAGI-SPD----VVT 79 (456)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~ 79 (456)
........+...|++++|...++++....+..+.. +++.+...+...|++++|.+.+++..+... .++ ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 33444556677888888888888887765433322 456666777788888888888877764310 011 123
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHC----CCC--C-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--C--Chh
Q 012800 80 YNSLIAGATRNSLLSCSLDLLDEMLEM----GIP--P-DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLT--P--CTA 148 (456)
Q Consensus 80 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~ 148 (456)
+..+...+...|++++|.+.+++.... +.+ | ....+..+...+...|++++|...+++....... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 455666777788888888777776543 111 2 2334555666777777777777777776543211 1 123
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-c-HHHHH----HHHHHHHHcCCHHHHHHHHHHHhh
Q 012800 149 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVP-E-LVTYN----ILIKGLCKAGRLRTARWILKELGD 210 (456)
Q Consensus 149 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~ 210 (456)
++..+...+...|++++|...+++.......+ . ..... ..+..+...|++++|...+.....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 243 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 243 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 45556666666777777777766654321111 1 11111 122335566666666666665544
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.49 E-value=7.6e-12 Score=102.21 Aligned_cols=208 Identities=11% Similarity=-0.077 Sum_probs=161.3
Q ss_pred CCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHH
Q 012800 4 KLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSL 83 (456)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (456)
+.|+..+......+...|++++|+..|+.+++..+.++...+..+..++...|++++|++.|++..+.. +.+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 567789999999999999999999999999998865688888889999999999999999999999874 3357788999
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCH-------HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--ChhHHHHHH
Q 012800 84 IAGATRNSLLSCSLDLLDEMLEMGIPPDV-------WSYNSLMHCLFQLGKPDEANRVFQDMICGDLTP--CTATFNIML 154 (456)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 154 (456)
..++...|++++|.+.+++..+..+. +. ..|..+...+...|++++|.+.|++..+.+ +. +...+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence 99999999999999999999986533 44 457888889999999999999999999774 44 467777787
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 012800 155 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 223 (456)
Q Consensus 155 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 223 (456)
.++...| ...++++...+ ..+...|.... ....+.+++|...+++..+..+. +..+...+
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l 220 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQ 220 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 7776544 34455555543 22344444333 33456689999999998875432 34444433
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.49 E-value=4.3e-12 Score=99.92 Aligned_cols=165 Identities=18% Similarity=0.053 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 012800 7 TRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAG 86 (456)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (456)
...+..+...+...|++++|...++++.+..+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 45566667777777777777777777766543 356667777777777777777777777776653 3345566666666
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHH
Q 012800 87 ATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNA 166 (456)
Q Consensus 87 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 166 (456)
+...|++++|.+.++++..... .+...+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 6677777777777776665532 255556666666666666666666666666543 34455566666666666666666
Q ss_pred HHHHHHHHh
Q 012800 167 LRMFRGLQK 175 (456)
Q Consensus 167 ~~~~~~~~~ 175 (456)
...++++.+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665544
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.48 E-value=1.7e-11 Score=100.14 Aligned_cols=206 Identities=13% Similarity=0.062 Sum_probs=152.8
Q ss_pred CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHH
Q 012800 215 PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 294 (456)
Q Consensus 215 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 294 (456)
.++..+......+...|++++|...|+...+...+++...+..+..++...|++++|...+++..+.++. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567788888889999999999999999998863377777777888999999999999999999987543 677888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 012800 295 NLYCKEGKLEAAYLLLDEMEKQGFECDK-------YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS--NLEAYNCIVD 365 (456)
Q Consensus 295 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 365 (456)
.+|...|++++|...+++..+.... +. ..+..+...+...|++++|...++++.+.. +. +...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 9999999999999999998876322 34 457778888889999999999999988763 33 4577777877
Q ss_pred HHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 012800 366 RLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 431 (456)
Q Consensus 366 ~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 431 (456)
+|...|+ ..++++... +...+... .....+.+++|+..++++++..+. +..+...+..
T Consensus 162 ~~~~~~~-----~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~ 222 (228)
T 4i17_A 162 LFYNNGA-----DVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHH-----HHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 7765554 333333332 33333322 233456689999999999887543 5555544443
No 85
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.41 E-value=7.7e-10 Score=100.53 Aligned_cols=204 Identities=10% Similarity=-0.088 Sum_probs=134.8
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 012800 199 RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM 278 (456)
Q Consensus 199 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 278 (456)
+.+..+|+++.... +.+...|...+..+...|+++.|..++++.... |.+...+. .|....+.++. ++.+
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l 265 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHH
Confidence 44666777776643 335777777777778888888888888888877 33332222 22222222221 2222
Q ss_pred HHC------------CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh-cCCHHHHHHHH
Q 012800 279 VTD------------GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK-AGNIKGARLHL 345 (456)
Q Consensus 279 ~~~------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~ 345 (456)
.+. ........|...+....+.++.+.|..+|+.. .. ...+...|...+..-.. .++.+.|..+|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence 211 00112345666677776788899999999999 32 22344455433332222 34699999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccCChhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 012800 346 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 416 (456)
Q Consensus 346 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 416 (456)
+...+. .+.+...+...++...+.|+.+.|..+|+++.. ....|...+..-...|+.+.+.++++++.+
T Consensus 344 e~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 344 SSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 998875 344566677788888889999999999999843 577788888777788999999998888874
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.41 E-value=7.5e-12 Score=105.89 Aligned_cols=224 Identities=11% Similarity=0.033 Sum_probs=160.4
Q ss_pred HhcCchhHHHHHHHHHHHc-------CCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHC------C-CccCHHHHHHH
Q 012800 228 FRNRKYKLGLEILSAMKRK-------GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD------G-VQLDIVSYNTL 293 (456)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 293 (456)
...|++++|...+++..+. ..+....++..+...+...|++++|...++++... + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888877777652 22334667888899999999999999999998864 1 23346678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc------CC-CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-CCCCHHH
Q 012800 294 INLYCKEGKLEAAYLLLDEMEKQ------GF-ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI------G-FDSNLEA 359 (456)
Q Consensus 294 ~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 359 (456)
...|...|++++|...+.+..+. .. +....++..+...+...|++++|...++++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 11 224567888899999999999999999998765 1 1223567
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhccC------------ChhhHHHHHHHHHccCChhHHH------HHHHHHHHcCCCC
Q 012800 360 YNCIVDRLGKDGKIDHAINVFESMEVK------------DSFTYSSMVHNLCKAKRLPSAS------KLLLSCLKSGVRI 421 (456)
Q Consensus 360 ~~~l~~~~~~~g~~~~a~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~------~~~~~~~~~~~~~ 421 (456)
+..+..++...|++++|.+.++++... ....|..+...+...+....+. ..++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999987653 2234444444444433333332 22222211 1122
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHhc
Q 012800 422 LKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 452 (456)
Q Consensus 422 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 452 (456)
...++..++.+|...|++++|..++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457788999999999999999999988764
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.38 E-value=1.8e-10 Score=95.66 Aligned_cols=241 Identities=9% Similarity=0.028 Sum_probs=153.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCch
Q 012800 154 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 233 (456)
Q Consensus 154 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 233 (456)
++-..-.|.+..++.-..++.. .........+.+++...|+++.. ....|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 3445567888888773332221 11223333455777777776531 12234443444444333 222
Q ss_pred hHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-ccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012800 234 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV-QLDIVSYNTLINLYCKEGKLEAAYLLLDE 312 (456)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 312 (456)
+...+++....+ +++...+..+..++...|++++|.+++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666777766654 45555666777888888888888888888766543 23667777888888888888888888888
Q ss_pred HHHcCCCc-----CHHhHHHHHHHH--HhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 012800 313 MEKQGFEC-----DKYTHTILIDGL--CKAG--NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 383 (456)
Q Consensus 313 ~~~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 383 (456)
|.+. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+......++.++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8775 44 355666666553 3334 788888888887664 444333334444788888888888888765
Q ss_pred cc------------C-ChhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 012800 384 EV------------K-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 384 ~~------------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 418 (456)
.. + ++.++..++......|+ +|.+++.++.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 43 2 66667666666666675 7788888887664
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.37 E-value=1.1e-11 Score=104.93 Aligned_cols=228 Identities=12% Similarity=0.013 Sum_probs=156.6
Q ss_pred HhhCcHHHHHHHHHHHHhc-------CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhC------CC-CCCHhHHHHH
Q 012800 18 CKANRLEKAEAIIIDGIRL-------GVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREA------GI-SPDVVTYNSL 83 (456)
Q Consensus 18 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 83 (456)
...|++++|+..++++++. +.+....++..+..++...|++++|...++++.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4456777777777766652 22234568889999999999999999999988754 21 2235678889
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCC-------CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC------C-CCCChhH
Q 012800 84 IAGATRNSLLSCSLDLLDEMLEMG-------IPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICG------D-LTPCTAT 149 (456)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 149 (456)
...+...|++++|.+.+++..... .+....++..+...+...|++++|...+++.... + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999987641 1234667888999999999999999999998764 1 1234567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCC-cHHHHHHHHHHHHHcCC------HHHHHHHHHHHhhCCCCC
Q 012800 150 FNIMLNGLCKNRYTDNALRMFRGLQKH-------GFVP-ELVTYNILIKGLCKAGR------LRTARWILKELGDSGHAP 215 (456)
Q Consensus 150 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~ 215 (456)
+..+...+...|++++|...+++..+. ...+ ....+..+...+...+. +..+...+..... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888899999999999999999988753 1111 22233333333333222 2333333322221 1122
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHHc
Q 012800 216 NAITYTTIMKCCFRNRKYKLGLEILSAMKRK 246 (456)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 246 (456)
...++..+..++...|++++|...+++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556788889999999999999999988754
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.36 E-value=2.6e-10 Score=96.78 Aligned_cols=163 Identities=11% Similarity=-0.038 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC----c-cCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCc-C----
Q 012800 253 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGV----Q-LDIVSYNTLINLYCKE-GKLEAAYLLLDEMEKQGFEC-D---- 321 (456)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~---- 321 (456)
.++..+..+|...|++++|...+++.+.... . ....++..+...|... |++++|+..+++..+..... +
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 3445555555555666666555555544210 0 0133566666677774 77777777777665431100 1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHHhccCChh------
Q 012800 322 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL------EAYNCIVDRLGKDGKIDHAINVFESMEVKDSF------ 389 (456)
Q Consensus 322 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------ 389 (456)
..++..+...+...|++++|...++++.+....... ..+..++.++...|++++|...|++....++.
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 245666677777777777777777777664321111 14556666777777777777777777654221
Q ss_pred --hHHHHHHHHH--ccCChhHHHHHHHHHH
Q 012800 390 --TYSSMVHNLC--KAKRLPSASKLLLSCL 415 (456)
Q Consensus 390 --~~~~l~~~~~--~~~~~~~A~~~~~~~~ 415 (456)
.+..++.++. ..+++++|++.|+++.
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 2333444443 3456667777666554
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.34 E-value=2.7e-10 Score=96.65 Aligned_cols=203 Identities=13% Similarity=-0.016 Sum_probs=123.8
Q ss_pred HHHhcCChHHHHHHHHHHHhC----CCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 012800 156 GLCKNRYTDNALRMFRGLQKH----GFVPE-LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRN 230 (456)
Q Consensus 156 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (456)
.|...|++++|...|++..+. |.++. ..+|+.+..+|...|++++|...+++.... +...
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~~~ 110 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI---------------FTHR 110 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------HHHc
Confidence 455566666666666655432 11111 334555555555555555555555544331 1111
Q ss_pred CchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCCcc-----CHHHHHHHHHHHHhcCCHH
Q 012800 231 RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI-GRLKEATDYMEQMVTDGVQL-----DIVSYNTLINLYCKEGKLE 304 (456)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~ 304 (456)
|++..+ ..++..+..+|... |++++|...+++.++..... ...++..+...+...|+++
T Consensus 111 g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 111 GQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp TCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 221111 23455667777775 88888888888777641110 1356778888899999999
Q ss_pred HHHHHHHHHHHcCCCcCH------HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHH--hC
Q 012800 305 AAYLLLDEMEKQGFECDK------YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN------LEAYNCIVDRLG--KD 370 (456)
Q Consensus 305 ~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~--~~ 370 (456)
+|...+++..+....... ..+..+..++...|++++|...+++..+. .|+ ...+..++..+. ..
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 999999988875433221 15677777888899999999999988764 232 123444555554 45
Q ss_pred CCHHHHHHHHHHhccCChhh
Q 012800 371 GKIDHAINVFESMEVKDSFT 390 (456)
Q Consensus 371 g~~~~a~~~~~~~~~~~~~~ 390 (456)
+++++|+..|+++...++..
T Consensus 254 ~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp TTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHhccCCccHHHH
Confidence 77899999998887776544
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.33 E-value=1.6e-09 Score=89.98 Aligned_cols=243 Identities=8% Similarity=-0.075 Sum_probs=145.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHH
Q 012800 120 HCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 199 (456)
Q Consensus 120 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 199 (456)
+-..-.|.+..++.-...+.. ......-..+.+++...|+++.. ..-.|....+..+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT---
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc---
Confidence 445567777777763332221 11223333445777777776542 112334334333333 33322
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCC-CcChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 012800 200 TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY-TFDGFGYCTVIAAFVKIGRLKEATDYMEQM 278 (456)
Q Consensus 200 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 278 (456)
+...|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+...+..+.+.|+.+.|.+.++.|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666777666544 34555556777777888888888888887766542 135566667777888888888888888888
Q ss_pred HHCCCcc-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012800 279 VTDGVQL-----DIVSYNTLINLY--CKEG--KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 349 (456)
Q Consensus 279 ~~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 349 (456)
.+. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 764 34 244555555553 2234 788888888887654 3443333334447778888888888887655
Q ss_pred hC-----C----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC
Q 012800 350 KI-----G----FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 386 (456)
Q Consensus 350 ~~-----~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (456)
+. . -+.++.++..++......|+ +|.++++++...
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 42 0 13456666566666666676 777777777665
No 92
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.32 E-value=5.5e-09 Score=94.96 Aligned_cols=376 Identities=9% Similarity=-0.043 Sum_probs=229.6
Q ss_pred hhC-cHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCC-hhHH
Q 012800 19 KAN-RLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSL-LSCS 96 (456)
Q Consensus 19 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a 96 (456)
+.| +++.|..+|+.++..- |. |+++.+..+|++.... .|+...|...+....+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 3777888888877643 22 8899999999999875 5788899888887777663 4566
Q ss_pred HHHHHHHHHC-CCC-CCHHhHHHHHHHHH----hcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 012800 97 LDLLDEMLEM-GIP-PDVWSYNSLMHCLF----QLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMF 170 (456)
Q Consensus 97 ~~~~~~~~~~-~~~-~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 170 (456)
..+|+..... |.. .+...|...+..+. ..++.+.+.++|++.+......-...|...... ........+..++
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~ 146 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHH
Confidence 7788877764 432 36677777776554 246688899999999874211111222222211 1111222232222
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-------chhHHHHHHHHH
Q 012800 171 RGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR-------KYKLGLEILSAM 243 (456)
Q Consensus 171 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~ 243 (456)
.+.. +.+..|..+++.+...-...+...|...+..-...+ ..+.+..+|+++
T Consensus 147 ~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 147 GDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp HHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 2211 122233333333221000013344544444322211 134567788888
Q ss_pred HHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------
Q 012800 244 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG------ 317 (456)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 317 (456)
.... +.++..|...+..+.+.|+.+.|..+++..... +.+...+. .|....+.++. ++.+.+.-
T Consensus 206 l~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~ 275 (493)
T 2uy1_A 206 LDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAE 275 (493)
T ss_dssp HHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC-----
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccc
Confidence 8764 566778888888888999999999999999987 33433332 22222121222 22222110
Q ss_pred ------CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHhccC---C
Q 012800 318 ------FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG-KIDHAINVFESMEVK---D 387 (456)
Q Consensus 318 ------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~---~ 387 (456)
.......|...+....+.++.+.|..+|+.+ ... ..+..+|...+..-...+ +.+.|.++|+..... +
T Consensus 276 ~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~ 353 (493)
T 2uy1_A 276 SAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS 353 (493)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC
T ss_pred hhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC
Confidence 0112245667777777788899999999999 322 235555554443333334 699999999988764 5
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 012800 388 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 451 (456)
Q Consensus 388 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 451 (456)
+..|...+....+.|+.+.|..+|+++. .....|...+.--...|+.+.+++++++...
T Consensus 354 ~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 354 TLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6667777887788999999999999972 2567788888877888999999998888765
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.31 E-value=2e-10 Score=95.89 Aligned_cols=104 Identities=9% Similarity=-0.039 Sum_probs=77.1
Q ss_pred CCCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCC---HHhHHHHHHHHHccCChhHHHHHHHHHHhCCC-C-CCH
Q 012800 3 GKLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPD---VVTYNMLIDAYCQFVSFDAGYTILNRMREAGI-S-PDV 77 (456)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~ 77 (456)
.+.++..+-.+...+.+.|++++|+..|+.+++..+. + ...+..+..++.+.|++++|+..|+...+... . ...
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 4556777777788888888888888888888876543 3 56777788888888888888888888877531 1 124
Q ss_pred hHHHHHHHHHHc--------CCChhHHHHHHHHHHHCC
Q 012800 78 VTYNSLIAGATR--------NSLLSCSLDLLDEMLEMG 107 (456)
Q Consensus 78 ~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~ 107 (456)
..+..+..++.. .|++++|++.|+++.+..
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 456666777777 888888888888887754
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.31 E-value=1.6e-10 Score=96.51 Aligned_cols=190 Identities=8% Similarity=-0.057 Sum_probs=116.3
Q ss_pred CcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-c-CHH
Q 012800 249 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD---IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-C-DKY 323 (456)
Q Consensus 249 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~ 323 (456)
+.+...+......+...|++++|...|+++++..+. + ...+..+..+|...|++++|...|+...+.... | ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 345566667777888888888888888888876332 3 567777888888888888888888888875321 1 244
Q ss_pred hHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccCChhhHHHHH
Q 012800 324 THTILIDGLCK--------AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMV 395 (456)
Q Consensus 324 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~ 395 (456)
.+..+..++.. .|++++|...|+++++.. +.+......+.. +..........+..++
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~~~~~~~~la 155 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAKLARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 56677777777 888888888888887752 222222211110 0000000111234555
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCC--CHHhHHHHHHHHHcc----------CChHHHHHHHHHHHhccc
Q 012800 396 HNLCKAKRLPSASKLLLSCLKSGVRI--LKSAQKAVVDGLRHS----------GCRREAKKIQSKIRMAKI 454 (456)
Q Consensus 396 ~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~ 454 (456)
..|...|++++|+..|+++++..+.. ....+..++.++... |++++|...++++.+..+
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 66666666666666666666553221 233455555555544 566666666666655443
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.28 E-value=3.2e-10 Score=83.75 Aligned_cols=126 Identities=15% Similarity=0.069 Sum_probs=62.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCC
Q 012800 327 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKR 403 (456)
Q Consensus 327 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 403 (456)
.+...+...|++++|..+++.+.+.. +.+...+..++..+...|++++|...++++... +...+..++..+...|+
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence 33334444444444444444443332 223334444444444444444444444443322 33344455555555566
Q ss_pred hhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhccc
Q 012800 404 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 454 (456)
Q Consensus 404 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 454 (456)
+++|.+.++++.+..+ .+...+..++.++...|++++|...++++.+..+
T Consensus 85 ~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 85 YDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 6666666665555432 2455555566666666666666666666555443
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.28 E-value=5.9e-10 Score=90.57 Aligned_cols=189 Identities=10% Similarity=-0.025 Sum_probs=125.1
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCcc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH--HhHHH
Q 012800 252 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL--DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK--YTHTI 327 (456)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 327 (456)
...+......+...|++++|...|+++++..+.. ....+..+..+|.+.|++++|...|+++.+..+.... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3445556677888899999999999988753321 2356777888899999999999999998875332111 24445
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccCChh
Q 012800 328 LIDGLCK------------------AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF 389 (456)
Q Consensus 328 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 389 (456)
+..++.. .|++++|...|+++++.. |.+.......... ..+......
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l--------------~~~~~~~~~ 148 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL--------------VFLKDRLAK 148 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH--------------HHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH--------------HHHHHHHHH
Confidence 5555543 456677777777766642 2222222111110 000000011
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHccCChHHHHHHHHHHHhcccC
Q 012800 390 TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL--KSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 455 (456)
Q Consensus 390 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 455 (456)
....++..|.+.|++++|+..|+++++..+... ...+..++.++.+.|++++|...++++....+.
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 224567788899999999999999998743311 256888999999999999999999999887654
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.27 E-value=1.2e-10 Score=110.84 Aligned_cols=171 Identities=9% Similarity=-0.084 Sum_probs=101.1
Q ss_pred HhhCcHHHHHHHHHHHH--------hcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 012800 18 CKANRLEKAEAIIIDGI--------RLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATR 89 (456)
Q Consensus 18 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 89 (456)
...|++++|++.++++. +..+ .+...+..+..++...|++++|++.|+++.+.+ +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 55666666666666666 3332 245556666666666666666666666666543 2345566666666666
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 012800 90 NSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRM 169 (456)
Q Consensus 90 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 169 (456)
.|++++|++.|++..+.... +...+..+..++.+.|++++ .+.|++..+.+ +.+...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666665422 45556666666666666666 66666666554 44555666666666666666666666
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHH
Q 012800 170 FRGLQKHGFVPELVTYNILIKGLCK 194 (456)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~l~~~~~~ 194 (456)
|++..+.+ +.+...+..+..++..
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC-
T ss_pred HHhhcccC-cccHHHHHHHHHHHHc
Confidence 66665542 1134444445555444
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.27 E-value=4.1e-10 Score=90.20 Aligned_cols=190 Identities=12% Similarity=-0.015 Sum_probs=96.8
Q ss_pred chHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 012800 6 STRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIA 85 (456)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (456)
++..+......+...|++++|+..|+.+++..+. +...|... ..... ..........+..
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~-----~~~~~--------------~~~~~~~~~~lg~ 62 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWT-----NVDKN--------------SEISSKLATELAL 62 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHH-----HSCTT--------------SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHh-----hhcch--------------hhhhHHHHHHHHH
Confidence 3444555666778889999999999988876532 33344330 00000 0001112233555
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCC--h
Q 012800 86 GATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRY--T 163 (456)
Q Consensus 86 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~ 163 (456)
++.+.|++++|+..|++..+..+. +...+..+..++...|++++|...|++.++.. |.+..++..+..++...|. .
T Consensus 63 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 63 AYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHH
Confidence 555666666666666665554322 45555566666666666666666666665554 4445555555555544332 2
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 012800 164 DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT 221 (456)
Q Consensus 164 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 221 (456)
+.+...++.... ..|....+.....++...|++++|...|++..+. .|+.....
T Consensus 141 ~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~ 194 (208)
T 3urz_A 141 KKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQK 194 (208)
T ss_dssp HHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHH
T ss_pred HHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 333444444322 1222223333444455556666666666666553 34444333
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.27 E-value=5.9e-10 Score=89.28 Aligned_cols=134 Identities=15% Similarity=0.055 Sum_probs=100.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 012800 292 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 371 (456)
Q Consensus 292 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 371 (456)
.+..+|...|++++|...+++..+..+ -+...+..+...+...|++++|...|+++++.. |.+...+..+..+|...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 388888999999999999999988643 367788889999999999999999999998874 667888888888876655
Q ss_pred C--HHHHHHHHHHhccCChh--hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHH
Q 012800 372 K--IDHAINVFESMEVKDSF--TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 429 (456)
Q Consensus 372 ~--~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 429 (456)
. ...+...+..+...++. .+.....++...|++++|+..|+++++. .|+......+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l 196 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 4 44566666666655433 3455667777889999999999999855 5665544433
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.25 E-value=4e-11 Score=90.44 Aligned_cols=143 Identities=10% Similarity=-0.016 Sum_probs=105.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 012800 293 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 372 (456)
Q Consensus 293 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 372 (456)
|...+...|++++|+..++...... +-+...+..+...|...|++++|+..|+++++.. +.+...|..+..+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 3445556677888888887776542 1134456677888888888888888888888764 5677888888888888888
Q ss_pred HHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHH-HHHHHHcCCCCCHHhHHHHHHHHHccCC
Q 012800 373 IDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKL-LLSCLKSGVRILKSAQKAVVDGLRHSGC 438 (456)
Q Consensus 373 ~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 438 (456)
+++|+..|+++.+. ++.+|..++.+|.+.|++++|.+. ++++++..+. ++.++......+...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 88888888887765 667888888888888888876665 5888877543 67777777777777775
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.24 E-value=7.9e-10 Score=81.63 Aligned_cols=131 Identities=13% Similarity=0.139 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 012800 8 RLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGA 87 (456)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 87 (456)
..|..+...+...|++++|..+++++.+.++ .+...+..+...+...|++++|...++++.+.+ +.+...+..+...+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 3567778888888888888888888887654 366677778888888888888888888877654 33566677777777
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012800 88 TRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICG 141 (456)
Q Consensus 88 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 141 (456)
...|++++|.+.++++..... .+...+..+...+...|++++|.+.++++...
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 888888888888887776542 25566667777777777777777777776643
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.23 E-value=1.2e-08 Score=85.68 Aligned_cols=214 Identities=7% Similarity=-0.097 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC--chhHHHHHHHHHHHcCCCcChhhHHHHHHHH----HHc---CCh
Q 012800 198 LRTARWILKELGDSGHAPNAITYTTIMKCCFRNR--KYKLGLEILSAMKRKGYTFDGFGYCTVIAAF----VKI---GRL 268 (456)
Q Consensus 198 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 268 (456)
.++|+..++.+...++. ....|+.--.++...+ ++++++.+++.+.... |.+..+++.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 35677777766664332 4445555555555556 6777777777776654 44445554443333 334 566
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCC------HHH
Q 012800 269 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE--AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN------IKG 340 (456)
Q Consensus 269 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~ 340 (456)
+++..+++.+.+.+++ +..+|+--...+.+.|.++ ++++.++.+.+.++. +...|+.-...+...+. +++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 6777777777665433 6666666666666666666 667777776665433 55556555555555554 666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHhccC------ChhhHHHHHHHHHccCChhHHHHHHHH
Q 012800 341 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH-AINVFESMEVK------DSFTYSSMVHNLCKAKRLPSASKLLLS 413 (456)
Q Consensus 341 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~ 413 (456)
+++.++.++... +.|...|+.+...+.+.|+..+ +..+..++... ++..+..++.++.+.|+.++|+++++.
T Consensus 205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 666666666553 5566666666666666666333 33444444321 455666666666666666667776666
Q ss_pred HHH
Q 012800 414 CLK 416 (456)
Q Consensus 414 ~~~ 416 (456)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.22 E-value=4e-10 Score=107.27 Aligned_cols=171 Identities=11% Similarity=-0.031 Sum_probs=142.7
Q ss_pred HhcCchhHHHHHHHHHH--------HcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh
Q 012800 228 FRNRKYKLGLEILSAMK--------RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 299 (456)
Q Consensus 228 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 299 (456)
...|++++|++.++++. +.. +.+...+..+..++...|++++|...++++++.+.. +...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 77899999999999998 443 556677888889999999999999999999986433 77889999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 012800 300 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 379 (456)
Q Consensus 300 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 379 (456)
.|++++|...|++..+.... +...+..+..++...|++++ ...|+++.+.. +.+...+..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999886432 67788899999999999999 99999998874 66788999999999999999999999
Q ss_pred HHHhccC---ChhhHHHHHHHHHccCC
Q 012800 380 FESMEVK---DSFTYSSMVHNLCKAKR 403 (456)
Q Consensus 380 ~~~~~~~---~~~~~~~l~~~~~~~~~ 403 (456)
|+++... +...+..++.++...++
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999876 45677777888766555
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.22 E-value=4.4e-09 Score=84.39 Aligned_cols=157 Identities=13% Similarity=0.039 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHH
Q 012800 286 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG----NIKGARLHLEYMNKIGFDSNLEAYN 361 (456)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 361 (456)
++..+..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|..+|++..+.+ +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 33444444444444455555555555444432 23334444444433 3 4455555555544432 334444
Q ss_pred HHHHHHHh----CCCHHHHHHHHHHhccC-C----hhhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCHHhHHH
Q 012800 362 CIVDRLGK----DGKIDHAINVFESMEVK-D----SFTYSSMVHNLCK----AKRLPSASKLLLSCLKSGVRILKSAQKA 428 (456)
Q Consensus 362 ~l~~~~~~----~g~~~~a~~~~~~~~~~-~----~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 428 (456)
.|...|.. .+++++|.+.|+++... + +.++..|...|.. .+++++|+..|++..+. ..++..+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 44444444 44555555555554444 2 3444455555544 44555555555555443 112333444
Q ss_pred HHHHHHcc-C-----ChHHHHHHHHHHHh
Q 012800 429 VVDGLRHS-G-----CRREAKKIQSKIRM 451 (456)
Q Consensus 429 l~~~~~~~-g-----~~~~A~~~~~~~~~ 451 (456)
++..|..- | +.++|..+|++..+
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 44444321 2 45555555554443
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.21 E-value=2.6e-10 Score=88.77 Aligned_cols=164 Identities=12% Similarity=-0.016 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHH-
Q 012800 8 RLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAG- 86 (456)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 86 (456)
..+..+...+.+.|++++|+..|+++++..+. +...+..+..++...|++++|+..++.+.+.. |+...+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHH
Confidence 45566777888899999999999988876643 67788888889999999999999998877653 344333322212
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCChHH
Q 012800 87 ATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTP-CTATFNIMLNGLCKNRYTDN 165 (456)
Q Consensus 87 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 165 (456)
+...+....+.+.+++..+..+. +...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 12223334567778887775432 57777888888888888888888888888765322 34577788888888888888
Q ss_pred HHHHHHHHHh
Q 012800 166 ALRMFRGLQK 175 (456)
Q Consensus 166 a~~~~~~~~~ 175 (456)
|...|++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888876543
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.21 E-value=6.4e-10 Score=93.98 Aligned_cols=165 Identities=9% Similarity=-0.038 Sum_probs=102.5
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHH-HHH
Q 012800 41 DVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYN-SLM 119 (456)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~ 119 (456)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.++++.... |+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 44455566666667777777777777766653 2345566666777777777777777777665543 3332222 222
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHHcCCH
Q 012800 120 HCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV-PELVTYNILIKGLCKAGRL 198 (456)
Q Consensus 120 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 198 (456)
..+...++.+.|.+.+++..... +.+...+..+...+...|++++|+..|+++.+.... .+...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 23555666666777777766654 555666777777777777777777777776665221 1245666677777777777
Q ss_pred HHHHHHHHHHh
Q 012800 199 RTARWILKELG 209 (456)
Q Consensus 199 ~~a~~~~~~~~ 209 (456)
++|...+++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77766666543
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.21 E-value=1.4e-10 Score=87.42 Aligned_cols=146 Identities=8% Similarity=-0.087 Sum_probs=95.5
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCC
Q 012800 13 CVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSL 92 (456)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 92 (456)
|...+...|++++|+..++......+ .+...+..+..+|.+.|++++|++.|++..+.. +-+..+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 34455667778888888777765432 234456667777778888888888888777664 3356777777777777888
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHH-HHHHHhCCCCCChhHHHHHHHHHHhcCC
Q 012800 93 LSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRV-FQDMICGDLTPCTATFNIMLNGLCKNRY 162 (456)
Q Consensus 93 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 162 (456)
+++|+..|++..+..+. +..++..+..+|.+.|+++++.+. +++..+.. |.++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 88888887777775433 566777777777777777665554 46666554 4455666665555555543
No 108
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.18 E-value=1.3e-07 Score=79.54 Aligned_cols=217 Identities=8% Similarity=-0.010 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH----Hhc---Cchh
Q 012800 164 DNALRMFRGLQKHGFVPELVTYNILIKGLCKAG--RLRTARWILKELGDSGHAPNAITYTTIMKCC----FRN---RKYK 234 (456)
Q Consensus 164 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~ 234 (456)
++|+.+++.++..+ +-+...|+.--.++...+ ++++++..++.+...++. +..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45666666655542 223444555555555555 566666666665554332 333333322222 223 4556
Q ss_pred HHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChH--HHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCC------HHHH
Q 012800 235 LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK--EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK------LEAA 306 (456)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a 306 (456)
+++.+++.+.+.. +.+..++..-.-++.+.|.++ ++.+.++++++.++. |...|+.-...+...++ ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 6666666666554 445555555555555555555 666666666655443 55555555555555444 5556
Q ss_pred HHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 012800 307 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIG--FDSNLEAYNCIVDRLGKDGKIDHAINVFESM 383 (456)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 383 (456)
++.++.+....+. |...|+.+...+.+.|+. +.+..+...+...+ -+.+...+..++..+.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 6666655554322 455555555555555543 22334444443321 1234455555666666666666666666665
Q ss_pred cc
Q 012800 384 EV 385 (456)
Q Consensus 384 ~~ 385 (456)
..
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.18 E-value=4.5e-09 Score=84.35 Aligned_cols=176 Identities=13% Similarity=0.004 Sum_probs=111.8
Q ss_pred HHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCC----ChhHHHHHH
Q 012800 25 KAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNS----LLSCSLDLL 100 (456)
Q Consensus 25 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 100 (456)
+|++.|+...+.| ++.++..+...+...+++++|+++|++..+.| ++..+..+...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4666777776653 56667777777777777777777777777654 55666666666666 5 677777777
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCC-CChhHHHHHHHHHHh----cCChHHHHHHHH
Q 012800 101 DEMLEMGIPPDVWSYNSLMHCLFQ----LGKPDEANRVFQDMICGDLT-PCTATFNIMLNGLCK----NRYTDNALRMFR 171 (456)
Q Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 171 (456)
++..+.| +...+..|...|.. .+++++|++.|++..+.+.. ..+..+..|...|.. .+++++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776654 55566666666665 66777777777777665411 124566666666666 566777777777
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHhhCC
Q 012800 172 GLQKHGFVPELVTYNILIKGLCKA-G-----RLRTARWILKELGDSG 212 (456)
Q Consensus 172 ~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 212 (456)
+..+. +.+...+..|..+|... | ++++|..+|+...+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 76665 12333455555555432 2 6666666666665544
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.18 E-value=4.4e-09 Score=85.38 Aligned_cols=187 Identities=5% Similarity=-0.097 Sum_probs=121.7
Q ss_pred chHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCC--HHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCH---hHH
Q 012800 6 STRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPD--VVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDV---VTY 80 (456)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 80 (456)
++..+..+...+.+.|++++|+..|+.+++..+... ...+..+..++.+.|++++|+..|+++.+.... +. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHH
Confidence 455667778889999999999999999998764322 357888899999999999999999999876422 22 234
Q ss_pred HHHHHHHHc------------------CCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 012800 81 NSLIAGATR------------------NSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGD 142 (456)
Q Consensus 81 ~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 142 (456)
..+..++.. .|++++|...|+++.+..+. +...+...... ..+...+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH----
Confidence 444444433 34556666666666554211 11111111000 0000000
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 012800 143 LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE---LVTYNILIKGLCKAGRLRTARWILKELGDSGH 213 (456)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 213 (456)
......+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++.+.|++++|...++.+...++
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 0111345677888999999999999888762 212 24677788889999999999999988877543
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.17 E-value=9.3e-10 Score=102.95 Aligned_cols=161 Identities=11% Similarity=0.014 Sum_probs=121.5
Q ss_pred cCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHH
Q 012800 265 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 344 (456)
Q Consensus 265 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 344 (456)
.|++++|...+++..+.... +...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999999876433 678899999999999999999999999988643 3678899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHcc---CChhHHHHHHHHHHHcC
Q 012800 345 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKA---KRLPSASKLLLSCLKSG 418 (456)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~ 418 (456)
++++.+.. +.+...+..+..++.+.|++++|.+.++++... +...+..++.++... |++++|.+.++++++.+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99998874 667889999999999999999999999988765 677888999999999 99999999999999886
Q ss_pred CCCCHHhHHHH
Q 012800 419 VRILKSAQKAV 429 (456)
Q Consensus 419 ~~~~~~~~~~l 429 (456)
+. +...+..+
T Consensus 159 p~-~~~~~~~l 168 (568)
T 2vsy_A 159 VG-AVEPFAFL 168 (568)
T ss_dssp CC-CSCHHHHT
T ss_pred Cc-ccChHHHh
Confidence 44 33344333
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.16 E-value=1.7e-09 Score=91.34 Aligned_cols=157 Identities=10% Similarity=-0.033 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHH-HHHHHH
Q 012800 254 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT-ILIDGL 332 (456)
Q Consensus 254 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~ 332 (456)
.+..+...+...|++++|...++++....+. +...+..+...+...|++++|...++++... .|+..... .....+
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHH
Confidence 3334444444555555555555555444222 3444444555555555555555555544433 12222111 111123
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC-----ChhhHHHHHHHHHccCChhHH
Q 012800 333 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLCKAKRLPSA 407 (456)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A 407 (456)
...++.+.|...+++..... +.+...+..+...+...|++++|...|.++... +...+..++..+...|+.++|
T Consensus 196 ~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred HhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 33444444444444444432 334444444444444444444444444444432 133344444444444444444
Q ss_pred HHHHHHH
Q 012800 408 SKLLLSC 414 (456)
Q Consensus 408 ~~~~~~~ 414 (456)
...+++.
T Consensus 275 ~~~~r~a 281 (287)
T 3qou_A 275 ASXYRRQ 281 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.14 E-value=1.2e-09 Score=84.87 Aligned_cols=57 Identities=11% Similarity=0.060 Sum_probs=27.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012800 258 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 315 (456)
Q Consensus 258 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 315 (456)
....+...|++++|...+++..+..+ .+...+..+...+...|++++|...++....
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 33444455555555555555444321 1344445555555555555555555555443
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.12 E-value=2e-09 Score=92.02 Aligned_cols=159 Identities=9% Similarity=-0.042 Sum_probs=73.0
Q ss_pred HHHHhcCchhHHHHHHHHHHHcCCC-----cChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCc-cCHHHHHHHH
Q 012800 225 KCCFRNRKYKLGLEILSAMKRKGYT-----FDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD----GVQ-LDIVSYNTLI 294 (456)
Q Consensus 225 ~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~ 294 (456)
..|...|++++|...+.+..+.... .-..++..+..+|...|++++|...+++.+.. +-. ....++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566666666666655433100 01234455555555556666666666555432 100 0123444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCc-----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHH
Q 012800 295 NLYCKEGKLEAAYLLLDEMEKQGFEC-----DKYTHTILIDGLCKAGNIKGARLHLEYMNKI----GFDSN-LEAYNCIV 364 (456)
Q Consensus 295 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~ 364 (456)
..|.. |++++|+..+++..+..... ...++..+...+...|++++|+..++++.+. +..+. ...+..++
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 55555 55555555555554321000 0234444555555555555555555554432 10000 11333334
Q ss_pred HHHHhCCCHHHHHHHHHHhc
Q 012800 365 DRLGKDGKIDHAINVFESME 384 (456)
Q Consensus 365 ~~~~~~g~~~~a~~~~~~~~ 384 (456)
.++...|++++|...|++..
T Consensus 203 ~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 44444455555555555544
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.12 E-value=3.3e-09 Score=99.21 Aligned_cols=153 Identities=11% Similarity=-0.014 Sum_probs=118.7
Q ss_pred cCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHH
Q 012800 230 NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL 309 (456)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 309 (456)
.|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+.... +...+..+..+|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999998775 556788889999999999999999999999987443 688899999999999999999999
Q ss_pred HHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHhccC
Q 012800 310 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD---GKIDHAINVFESMEVK 386 (456)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 386 (456)
+++..+... .+...+..+...+...|++++|...++++.+.. +.+...+..+..++... |+.++|.+.++++...
T Consensus 80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999988643 367889999999999999999999999998874 56688899999999999 9999999999988776
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.10 E-value=1.8e-09 Score=92.31 Aligned_cols=221 Identities=10% Similarity=-0.033 Sum_probs=157.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHH
Q 012800 195 AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR-NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATD 273 (456)
Q Consensus 195 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 273 (456)
.|++++|.+++++..+.... .+.. .++++.|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 46777888888776653111 0222 56777777776654 456778899999999
Q ss_pred HHHHHHHCCC-----ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---Cc--CHHhHHHHHHHHHhcCCHHHHHH
Q 012800 274 YMEQMVTDGV-----QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF---EC--DKYTHTILIDGLCKAGNIKGARL 343 (456)
Q Consensus 274 ~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~ 343 (456)
.+.+...... ..-..++..+...|...|++++|...+++..+... .+ ...++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 9988876411 11245788889999999999999999998765311 11 23577788888888 99999999
Q ss_pred HHHHHHhCCC---CC--CHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---C------hhhHHHHHHHHHccCChhHHHH
Q 012800 344 HLEYMNKIGF---DS--NLEAYNCIVDRLGKDGKIDHAINVFESMEVK---D------SFTYSSMVHNLCKAKRLPSASK 409 (456)
Q Consensus 344 ~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~------~~~~~~l~~~~~~~~~~~~A~~ 409 (456)
.+++..+... .+ ...++..+...+.+.|++++|++.|+++... + ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999875411 11 1467888899999999999999999988764 1 2356677788888999999999
Q ss_pred HHHHHHHcCCCC-CHH---hHHHHHHHHHccCChHHHHH
Q 012800 410 LLLSCLKSGVRI-LKS---AQKAVVDGLRHSGCRREAKK 444 (456)
Q Consensus 410 ~~~~~~~~~~~~-~~~---~~~~l~~~~~~~g~~~~A~~ 444 (456)
.|++.+ ..+.. +.. .+..++.++ ..|+.+.+..
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999998 53221 221 244455555 5778776666
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.08 E-value=4.8e-09 Score=76.15 Aligned_cols=104 Identities=9% Similarity=0.003 Sum_probs=73.8
Q ss_pred CCCCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHH
Q 012800 2 FGKLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYN 81 (456)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 81 (456)
++|-.+..+......|.+.|++++|++.|+++++..+. +...|..+..++.+.|++++|++.|++..+.+ +.+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHH
Confidence 44555666777777777777777777777777776643 66677777777777777777777777777653 33566677
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCC
Q 012800 82 SLIAGATRNSLLSCSLDLLDEMLEMG 107 (456)
Q Consensus 82 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 107 (456)
.+..++...|++++|++.|++..+..
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 77777777777777777777777654
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.03 E-value=1e-07 Score=80.87 Aligned_cols=159 Identities=14% Similarity=0.095 Sum_probs=105.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CcCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHH
Q 012800 293 LINLYCKEGKLEAAYLLLDEMEKQGF-ECDKY----THTILIDGLCKAGNIKGARLHLEYMNKIGFD-SN----LEAYNC 362 (456)
Q Consensus 293 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 362 (456)
.+..+...|++++|..++++..+... .|+.. .+..+...+...+++++|...++++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566777778888877777765321 12211 2223555556667778888888877763211 12 235777
Q ss_pred HHHHHHhCCCHHHHHHHHHHhccC----------ChhhHHHHHHHHHccCChhHHHHHHHHHHHcC----CCCC-HHhHH
Q 012800 363 IVDRLGKDGKIDHAINVFESMEVK----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG----VRIL-KSAQK 427 (456)
Q Consensus 363 l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~-~~~~~ 427 (456)
++.+|...|++++|...|+++... ...++..++.+|.+.|++++|++.++++++.. ..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 777788888888888888776631 23467778888888888888888888876542 1111 56777
Q ss_pred HHHHHHHccCC-hHHHHHHHHHHHh
Q 012800 428 AVVDGLRHSGC-RREAKKIQSKIRM 451 (456)
Q Consensus 428 ~l~~~~~~~g~-~~~A~~~~~~~~~ 451 (456)
.++.++.+.|+ +++|...+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88888888884 5888888877654
No 119
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.02 E-value=2.2e-09 Score=80.33 Aligned_cols=97 Identities=8% Similarity=-0.002 Sum_probs=79.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHH
Q 012800 321 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHN 397 (456)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~ 397 (456)
+...+..+...+...|++++|...|+++.... |.+...|..+..++...|++++|+..|+++... ++..|..++.+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 34567777788888888999999888888764 667888888888888888888888888887665 67788888888
Q ss_pred HHccCChhHHHHHHHHHHHcC
Q 012800 398 LCKAKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 398 ~~~~~~~~~A~~~~~~~~~~~ 418 (456)
|...|++++|++.|+++++..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 888888888888888888764
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.02 E-value=1.2e-08 Score=74.05 Aligned_cols=107 Identities=15% Similarity=0.040 Sum_probs=72.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHH
Q 012800 323 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLC 399 (456)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~ 399 (456)
..+......+.+.|++++|+..|+++++.. +.+...|..+..++.+.|++++|++.|+++... +...|..++.++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 345566666777777777777777766653 555667777777777777777777777766554 5566777777777
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 012800 400 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 431 (456)
Q Consensus 400 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 431 (456)
..|++++|++.|+++++..+. +...+..+..
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~-~~~a~~~l~~ 123 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPS-NEEAREGVRN 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcC-CHHHHHHHHH
Confidence 777777777777777766433 5555554443
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.02 E-value=3.2e-08 Score=79.57 Aligned_cols=126 Identities=10% Similarity=-0.140 Sum_probs=75.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh
Q 012800 255 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 334 (456)
Q Consensus 255 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 334 (456)
+..+...+...|++++|...+++.. .|+...+..+...|...|++++|...+++..+.. +.+...+..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3344555666677777776666553 3456666666666667777777777776666543 2245566666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHhCCCHHHHHHHHHHhccC
Q 012800 335 AGNIKGARLHLEYMNKIGFDSN----------------LEAYNCIVDRLGKDGKIDHAINVFESMEVK 386 (456)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (456)
.|++++|...++.+.+.. +.+ ...+..+..++...|++++|.+.|+++...
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 677777777766666542 211 245555555666666666666666655554
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.01 E-value=1.6e-07 Score=79.68 Aligned_cols=159 Identities=13% Similarity=0.033 Sum_probs=114.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC-ccCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-cC----HHhHHH
Q 012800 258 VIAAFVKIGRLKEATDYMEQMVTDGV-QLDI----VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-CD----KYTHTI 327 (456)
Q Consensus 258 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 327 (456)
.+..+...|++++|..++++...... .|+. ..+..+...+...|++++|...+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788888888888888876422 2221 12334666667778889999999888763222 22 236788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC-----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---------ChhhHH
Q 012800 328 LIDGLCKAGNIKGARLHLEYMNKI-----GFDS-NLEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYS 392 (456)
Q Consensus 328 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~ 392 (456)
+...|...|++++|...++++.+. +..+ ...++..++.+|.+.|++++|.+.++++... -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888999999999999887741 1111 1346778888899999999999998877654 156788
Q ss_pred HHHHHHHccCC-hhHHHHHHHHHHH
Q 012800 393 SMVHNLCKAKR-LPSASKLLLSCLK 416 (456)
Q Consensus 393 ~l~~~~~~~~~-~~~A~~~~~~~~~ 416 (456)
.++.++.+.|+ +++|.+.+++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88889999995 5899999888864
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.00 E-value=8.6e-08 Score=81.29 Aligned_cols=90 Identities=14% Similarity=0.152 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhccC----------ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC----C-CH
Q 012800 359 AYNCIVDRLGKDGKIDHAINVFESMEVK----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR----I-LK 423 (456)
Q Consensus 359 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~-~~ 423 (456)
++..++..|...|++++|...|+++... ...++..++.+|...|++++|++.++++++.... . -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 3444444444444444444444443311 0124444444455555555555555444332100 0 03
Q ss_pred HhHHHHHHHHHccCChHHH-HHHHHH
Q 012800 424 SAQKAVVDGLRHSGCRREA-KKIQSK 448 (456)
Q Consensus 424 ~~~~~l~~~~~~~g~~~~A-~~~~~~ 448 (456)
.++..++.++...|++++| ...+++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3444444455555555555 443443
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.99 E-value=1.7e-08 Score=81.12 Aligned_cols=127 Identities=11% Similarity=-0.057 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012800 287 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 366 (456)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 366 (456)
...+..+...+...|++++|...+++.. .|+...+..+...+...|++++|...++++.... +.+...+..+..+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 3445667888889999999999998774 5678899999999999999999999999998874 6678889999999
Q ss_pred HHhCCCHHHHHHHHHHhccC---Ch----------------hhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 012800 367 LGKDGKIDHAINVFESMEVK---DS----------------FTYSSMVHNLCKAKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 367 ~~~~g~~~~a~~~~~~~~~~---~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 418 (456)
+...|++++|.+.|+++... +. ..+..++.++...|++++|.+.++++++..
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999998774 22 788899999999999999999999998664
No 125
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.99 E-value=3.2e-07 Score=77.89 Aligned_cols=214 Identities=8% Similarity=-0.028 Sum_probs=112.5
Q ss_pred hhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhc-C-CHHHHHHH
Q 012800 233 YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG-RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE-G-KLEAAYLL 309 (456)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~ 309 (456)
.++|+++++.++..+ +.+..+++.--.++...| .++++..+++.++..+++ +..+|+.-...+... + ++++++.+
T Consensus 70 se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 70 SERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 345566666665554 444445554444555555 366666666666655433 555555555444444 4 55666666
Q ss_pred HHHHHHcCCCcCHHhHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-------HH
Q 012800 310 LDEMEKQGFECDKYTHTILIDGLCKAGNIK--------GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-------ID 374 (456)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~ 374 (456)
++.+.+.... +..+|..-...+.+.|.++ +++..++++++.. +-|...|+.....+.+.++ ++
T Consensus 148 ~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 148 IHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHH
Confidence 6666554322 4445544444443333333 5666666666553 4455666666555555554 45
Q ss_pred HHHHHHHHhccC---ChhhHHHHHHHHHccCCh--------------------hHHHHHHHHHHHcC-----CCCCHHhH
Q 012800 375 HAINVFESMEVK---DSFTYSSMVHNLCKAKRL--------------------PSASKLLLSCLKSG-----VRILKSAQ 426 (456)
Q Consensus 375 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~--------------------~~A~~~~~~~~~~~-----~~~~~~~~ 426 (456)
++++.++++... |...|+.+...+.+.|+. .+..+...++...+ ..+.+..+
T Consensus 226 eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 226 DELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 666666555443 555665555555554443 12222222222111 02456667
Q ss_pred HHHHHHHHccCChHHHHHHHHHHH
Q 012800 427 KAVVDGLRHSGCRREAKKIQSKIR 450 (456)
Q Consensus 427 ~~l~~~~~~~g~~~~A~~~~~~~~ 450 (456)
..++..|...|+.++|.++++.+.
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 777777777777777777777764
No 126
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.98 E-value=1.5e-08 Score=83.14 Aligned_cols=185 Identities=8% Similarity=-0.083 Sum_probs=96.8
Q ss_pred hcCchhHHHHHHHHHHHcCCCcChhhHHHH-------HHHHHHcCChHHHHHHHHHHHHCC-----CccC----------
Q 012800 229 RNRKYKLGLEILSAMKRKGYTFDGFGYCTV-------IAAFVKIGRLKEATDYMEQMVTDG-----VQLD---------- 286 (456)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~---------- 286 (456)
..++...|.+.|.++.+.. |-....|..+ ...+...++..++...+....... ...+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4567777777777777664 4444555544 344444444444444444443310 0001
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHH
Q 012800 287 -----IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN--LEA 359 (456)
Q Consensus 287 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 359 (456)
......+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 1223344555666666666666666665432 322244444445566666666666665443321 111 234
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhccCC------hhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 012800 360 YNCIVDRLGKDGKIDHAINVFESMEVKD------SFTYSSMVHNLCKAKRLPSASKLLLSCLKS 417 (456)
Q Consensus 360 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 417 (456)
+..+..++...|++++|++.|+++...+ +..+.....++.+.|+.++|...|+++...
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5555666666666666666666654321 124455555666666666666666666655
No 127
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.98 E-value=6.5e-07 Score=76.04 Aligned_cols=184 Identities=8% Similarity=-0.000 Sum_probs=124.7
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccC-ChhHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 012800 9 LLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFV-SFDAGYTILNRMREAGISPDVVTYNSLIAGA 87 (456)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 87 (456)
+++.+-....+.+..++|+++++.++..++. +..+|+.--.++...| .++++++.++.+.... +-+..+|+.-...+
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 3444444445555667888888888887754 6667787777777777 4888888888888764 33566676666666
Q ss_pred HcC-C-ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChh--------HHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 012800 88 TRN-S-LLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPD--------EANRVFQDMICGDLTPCTATFNIMLNGL 157 (456)
Q Consensus 88 ~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 157 (456)
... + ++++++++++.+.+.... |..+|+.-..++.+.|.++ ++++.++++++.+ +-+...|+.....+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 555 5 778888888888876544 6677766665655555555 7788888877765 56677777777776
Q ss_pred HhcCC-------hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC
Q 012800 158 CKNRY-------TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 197 (456)
Q Consensus 158 ~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 197 (456)
.+.+. ++++++.+++..... +-|...|+.+-..+.+.|+
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 66665 567777777766652 3366666665555555443
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.97 E-value=2.5e-08 Score=76.49 Aligned_cols=95 Identities=13% Similarity=0.006 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012800 288 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 367 (456)
Q Consensus 288 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 367 (456)
..+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 334445555555555555555555555432 1234445555555555555555555555555442 33344444444455
Q ss_pred HhCCCHHHHHHHHHHhc
Q 012800 368 GKDGKIDHAINVFESME 384 (456)
Q Consensus 368 ~~~g~~~~a~~~~~~~~ 384 (456)
...|++++|.+.|+++.
T Consensus 92 ~~~~~~~~A~~~~~~a~ 108 (166)
T 1a17_A 92 MALGKFRAALRDYETVV 108 (166)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHH
Confidence 55555555555554443
No 129
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.97 E-value=2.5e-09 Score=80.21 Aligned_cols=109 Identities=11% Similarity=-0.016 Sum_probs=90.0
Q ss_pred HHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC-
Q 012800 308 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 386 (456)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 386 (456)
..++++.... +.+...+..+...+...|++++|...|+.+.... +.+...|..+..++...|++++|++.|+++...
T Consensus 8 ~~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455555432 1245567778888999999999999999998874 667888999999999999999999999988765
Q ss_pred --ChhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 012800 387 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 387 --~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 418 (456)
++..+..++.+|...|++++|++.|+++++..
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 67888899999999999999999999998764
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.96 E-value=1e-06 Score=74.57 Aligned_cols=163 Identities=12% Similarity=0.032 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCccC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CcC--HH
Q 012800 254 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD-----IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF---ECD--KY 323 (456)
Q Consensus 254 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 323 (456)
.+...+..+...|++++|.+.+.+..+...... ...+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456677788888888888887776532211 12234455667778899999999988875321 111 44
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHhccC---------Ch
Q 012800 324 THTILIDGLCKAGNIKGARLHLEYMNKI--GFDSN----LEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DS 388 (456)
Q Consensus 324 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~ 388 (456)
+++.+...|...|++++|...++++.+. ..+.+ ..++..++.+|...|++++|.+.++++... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888899999999999999987632 11221 257788888999999999999999887654 15
Q ss_pred hhHHHHHHHHHccCChhHH-HHHHHHHHH
Q 012800 389 FTYSSMVHNLCKAKRLPSA-SKLLLSCLK 416 (456)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~A-~~~~~~~~~ 416 (456)
.+|..++.+|...|++++| ...+++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788889999999999999 777887764
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.95 E-value=2.8e-09 Score=89.72 Aligned_cols=192 Identities=9% Similarity=0.013 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 012800 216 NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 295 (456)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 295 (456)
+...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...+++.++.... +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 44556666777777778888888777777764 446667777777777777777777777777765332 5667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 012800 296 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 375 (456)
Q Consensus 296 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 375 (456)
+|...|++++|...+++..+.+.. +...+...+....+. ..+... ........+.+......+... ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 777777777777777776653211 111111111111111 111111 112222234444444433332 2566777
Q ss_pred HHHHHHHhccCCh---hhHHHHHHHHHcc-CChhHHHHHHHHHHH
Q 012800 376 AINVFESMEVKDS---FTYSSMVHNLCKA-KRLPSASKLLLSCLK 416 (456)
Q Consensus 376 a~~~~~~~~~~~~---~~~~~l~~~~~~~-~~~~~A~~~~~~~~~ 416 (456)
|.+.++.+.+.++ .....+...+.+. +.+++|.++|.++.+
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777766655522 2223333333333 556666677666654
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.94 E-value=4.8e-09 Score=88.23 Aligned_cols=196 Identities=9% Similarity=-0.015 Sum_probs=123.8
Q ss_pred CCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHH
Q 012800 4 KLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSL 83 (456)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (456)
|.++..+..+...+.+.|++++|+..|+.+++..+. +...|..+..++.+.|++++|...+++..+.. +.+...+..+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 78 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 78 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 456778888889999999999999999999887643 77788888999999999999999999888764 3467778888
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCh
Q 012800 84 IAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYT 163 (456)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (456)
..++...|++++|.+.|++..+.+.. +...+...+....+. .++.. +........+.+......+... ..|+.
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~ 151 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--IAAER 151 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHH
Confidence 88899999999999998887764311 111111111111111 11111 1112222324444443333222 25777
Q ss_pred HHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHHc-CCHHHHHHHHHHHhh
Q 012800 164 DNALRMFRGLQKHGFVPE-LVTYNILIKGLCKA-GRLRTARWILKELGD 210 (456)
Q Consensus 164 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 210 (456)
++|++.++...+. .|+ ......+...+.+. +.++++.++|..+..
T Consensus 152 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777777776654 333 33333333334443 556777777776654
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.93 E-value=1.4e-08 Score=75.93 Aligned_cols=99 Identities=13% Similarity=0.035 Sum_probs=69.6
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 012800 41 DVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMH 120 (456)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 120 (456)
+...+..+...+.+.|++++|...|+++.+.. +.+...|..+..++...|++++|++.|++..+..+. ++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 44466667777777777777777777777653 335666777777777777777777777777765433 5566777777
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 012800 121 CLFQLGKPDEANRVFQDMICG 141 (456)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~ 141 (456)
+|...|++++|...|++....
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777765
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.92 E-value=1.6e-08 Score=78.69 Aligned_cols=121 Identities=8% Similarity=0.060 Sum_probs=98.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhCCCH--
Q 012800 297 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR-LGKDGKI-- 373 (456)
Q Consensus 297 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 373 (456)
+...|++++|...++...+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 346788999999999988764 2367888999999999999999999999988764 5577888888888 7889998
Q ss_pred HHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 012800 374 DHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 419 (456)
Q Consensus 374 ~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 419 (456)
++|...++++... +...+..++.++...|++++|...++++++..+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 9999999988765 677888899999999999999999999997753
No 135
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.91 E-value=8.8e-08 Score=69.23 Aligned_cols=113 Identities=11% Similarity=0.103 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 012800 7 TRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAG 86 (456)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (456)
+..|..+...+...|++++|.+.++++.+..+ .+..++..+..++...|++++|...++++.+.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 56666777777777777777777777776543 355666667777777777777777777766553 3345566666666
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 012800 87 ATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCL 122 (456)
Q Consensus 87 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 122 (456)
+...|++++|.+.++++.+.... +...+..+...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 66777777777777666654322 344444444433
No 136
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.91 E-value=7.6e-08 Score=73.76 Aligned_cols=129 Identities=13% Similarity=0.036 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 012800 7 TRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAG 86 (456)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (456)
+..+..+...+...|++++|...|+.+++..+. +..++..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 445666666777777777777777777766532 56666667777777777777777777766653 2345566666666
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHHhHH--HHHHHHHhcCChhHHHHHHHHH
Q 012800 87 ATRNSLLSCSLDLLDEMLEMGIPPDVWSYN--SLMHCLFQLGKPDEANRVFQDM 138 (456)
Q Consensus 87 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~ 138 (456)
+...|++++|.+.+++..+.... +...+. ..+..+...|++++|.+.+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66777777777777766664322 333332 2233355556666666666554
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.89 E-value=5.7e-08 Score=71.26 Aligned_cols=118 Identities=9% Similarity=0.086 Sum_probs=67.3
Q ss_pred CCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHH
Q 012800 4 KLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSL 83 (456)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (456)
+.++..|..+...+...|++++|...|+++.+..+ .+...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 44556666666666666666666666666665543 255566666666666666666666666665542 2244555555
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 012800 84 IAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQ 124 (456)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 124 (456)
..++...|++++|.+.+++..+.... +...+..+..++..
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHH
Confidence 66666666666666666665554211 23334444444443
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.89 E-value=4.3e-08 Score=78.09 Aligned_cols=151 Identities=14% Similarity=0.041 Sum_probs=72.3
Q ss_pred cCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-cCHHhHHHHHHHHHhcCCHH
Q 012800 265 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ----GFE-CDKYTHTILIDGLCKAGNIK 339 (456)
Q Consensus 265 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~ 339 (456)
.|++++|.+.++.+... ......++..+...+...|++++|...+++.... +.. ....++..+...+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 45555555533333221 2223444555555555555555555555554431 111 12234445555555556666
Q ss_pred HHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHhccC-----C----hhhHHHHHHHHHccCCh
Q 012800 340 GARLHLEYMNKI----GFDS--NLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----D----SFTYSSMVHNLCKAKRL 404 (456)
Q Consensus 340 ~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~ 404 (456)
+|...+++..+. +-.+ ....+..+...+...|++++|...+++.... + ..++..+..++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 665555554432 1011 1233445555555566666666555554422 1 12345556666666666
Q ss_pred hHHHHHHHHHHH
Q 012800 405 PSASKLLLSCLK 416 (456)
Q Consensus 405 ~~A~~~~~~~~~ 416 (456)
++|.+.++++++
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666654
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.89 E-value=7e-08 Score=70.45 Aligned_cols=122 Identities=12% Similarity=0.052 Sum_probs=78.0
Q ss_pred CCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHH
Q 012800 4 KLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSL 83 (456)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (456)
+.++..+..+...+...|++++|...++++.+..+ .+...+..+..++...|++++|.+.++...+.. +.+...+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 86 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHH
Confidence 34556666777777777777777777777776543 256666677777777777777777777766553 2345566666
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCh
Q 012800 84 IAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 128 (456)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 128 (456)
...+...|++++|.+.+++..+.... +...+..+..++...|++
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 66666777777777777666665322 455555555555555543
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.88 E-value=4.2e-08 Score=78.12 Aligned_cols=154 Identities=13% Similarity=-0.041 Sum_probs=116.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhCCC
Q 012800 298 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI----GF-DSNLEAYNCIVDRLGKDGK 372 (456)
Q Consensus 298 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~ 372 (456)
...|++++|.+.++.+... ......++..+...+...|++++|...+++.... +. +.....+..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4679999999966555442 2235678888999999999999999999998762 11 2235677888889999999
Q ss_pred HHHHHHHHHHhccC------C----hhhHHHHHHHHHccCChhHHHHHHHHHHHcCC-CCC----HHhHHHHHHHHHccC
Q 012800 373 IDHAINVFESMEVK------D----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV-RIL----KSAQKAVVDGLRHSG 437 (456)
Q Consensus 373 ~~~a~~~~~~~~~~------~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g 437 (456)
+++|.+.+++.... + ...+..+...+...|++++|.+.+++.++... ..+ ..++..++.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999987654 2 23577888999999999999999999875411 112 234577889999999
Q ss_pred ChHHHHHHHHHHHhc
Q 012800 438 CRREAKKIQSKIRMA 452 (456)
Q Consensus 438 ~~~~A~~~~~~~~~~ 452 (456)
++++|...+++..+.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999887653
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.88 E-value=4.9e-08 Score=71.59 Aligned_cols=114 Identities=13% Similarity=-0.028 Sum_probs=67.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHH
Q 012800 322 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNL 398 (456)
Q Consensus 322 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~ 398 (456)
...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|.+.++++... +...+..++.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4455555556666666666666666665542 334556666666666666666666666655543 455666666666
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccC
Q 012800 399 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 437 (456)
Q Consensus 399 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 437 (456)
...|++++|.+.++++++..+. +...+..+..++...|
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 7777777777777776655322 3445555555555444
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.87 E-value=5.5e-08 Score=75.54 Aligned_cols=122 Identities=8% Similarity=0.044 Sum_probs=98.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHH-HHhcCCH--
Q 012800 262 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG-LCKAGNI-- 338 (456)
Q Consensus 262 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 338 (456)
+...|++++|...++....... .+...+..+...|...|++++|...+++..+... .+...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcch
Confidence 3467889999999998887643 3778889999999999999999999999887642 366778888888 7788998
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC
Q 012800 339 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 386 (456)
Q Consensus 339 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (456)
++|...++.+.+.. +.+...+..+..++...|++++|...|+++...
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999999998874 556788888999999999999999999988776
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.87 E-value=6.8e-08 Score=70.54 Aligned_cols=115 Identities=12% Similarity=-0.039 Sum_probs=65.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHH
Q 012800 323 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLC 399 (456)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~ 399 (456)
..+..+...+...|++++|...++++.... +.+...+..++.++...|++++|.+.++++... +...+..++.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 344444555555555555555555555432 334555555555555556666666555554433 4455566666666
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCCh
Q 012800 400 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 439 (456)
Q Consensus 400 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 439 (456)
..|++++|.+.++++++..+. +...+..++.++...|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 667777777777766665432 555666666666655543
No 144
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.87 E-value=1.1e-07 Score=68.73 Aligned_cols=110 Identities=15% Similarity=0.114 Sum_probs=58.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHH
Q 012800 323 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLC 399 (456)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~ 399 (456)
..+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++... +...+..++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 344444455555555555555555554432 334445555555555555555555555554432 4445556666666
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 012800 400 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 434 (456)
Q Consensus 400 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 434 (456)
..|++++|...++++.+..+. +...+..+..++.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 122 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQ 122 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 666666666666666655322 4445555554443
No 145
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.86 E-value=3.4e-07 Score=75.10 Aligned_cols=187 Identities=7% Similarity=-0.129 Sum_probs=125.3
Q ss_pred hhCcHHHHHHHHHHHHhcCCCCCHHhHHHH-------HHHHHccCChhHHHHHHHHHHhCCCCCC---------------
Q 012800 19 KANRLEKAEAIIIDGIRLGVLPDVVTYNML-------IDAYCQFVSFDAGYTILNRMREAGISPD--------------- 76 (456)
Q Consensus 19 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 76 (456)
..++...|++.|.++.+..+. ....|..+ ...+...++..+++..+..... +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 578999999999999988754 66677777 5666666666666665555443 2222
Q ss_pred -------HhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--h
Q 012800 77 -------VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPC--T 147 (456)
Q Consensus 77 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 147 (456)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1223345666777888888888888777644 333355556667888888888888887554432 121 2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 012800 148 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVP--ELVTYNILIKGLCKAGRLRTARWILKELGDS 211 (456)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 211 (456)
..+..+..++...|++++|+..|++.......| ..........++.+.|+.++|...|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 356667778888888888888888876443213 2335556666777888888888888887764
No 146
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.85 E-value=1.3e-08 Score=75.77 Aligned_cols=97 Identities=9% Similarity=-0.046 Sum_probs=83.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHH
Q 012800 321 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHN 397 (456)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~ 397 (456)
+...+..+...+...|++++|...|+.+.... +.+...|..+..++...|++++|+..|+++... ++..+..++.+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 44566677788899999999999999998874 667888999999999999999999999988765 67788899999
Q ss_pred HHccCChhHHHHHHHHHHHcC
Q 012800 398 LCKAKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 398 ~~~~~~~~~A~~~~~~~~~~~ 418 (456)
+...|++++|++.|+++++..
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999998764
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.83 E-value=7.5e-08 Score=83.21 Aligned_cols=148 Identities=13% Similarity=0.010 Sum_probs=85.7
Q ss_pred CChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC--------------HHhHHHHHHH
Q 012800 266 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD--------------KYTHTILIDG 331 (456)
Q Consensus 266 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~ 331 (456)
+++++|...++...... +.+...+..+...|.+.|++++|...|++..+...... ..++..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34444544444333221 11456677777788888888888888888776532211 3556666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHH-
Q 012800 332 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSA- 407 (456)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A- 407 (456)
+.+.|++++|+..++++++.. +.+...+..+..+|...|++++|+..|+++... +..++..+..++...|++++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666553 445555666666666666666666666655443 445555555555556655555
Q ss_pred HHHHHHHH
Q 012800 408 SKLLLSCL 415 (456)
Q Consensus 408 ~~~~~~~~ 415 (456)
...+++|.
T Consensus 285 ~~~~~~~~ 292 (336)
T 1p5q_A 285 KKLYANMF 292 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 148
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.81 E-value=8.1e-06 Score=69.04 Aligned_cols=135 Identities=8% Similarity=0.015 Sum_probs=62.3
Q ss_pred HcCCHH-HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCc----------hhHHHHHHHHHHHcCCCcChhhHHHHHHHH
Q 012800 194 KAGRLR-TARWILKELGDSGHAPNAITYTTIMKCCFRNRK----------YKLGLEILSAMKRKGYTFDGFGYCTVIAAF 262 (456)
Q Consensus 194 ~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (456)
+.|.++ +|+.++..+...++. +..+|+.--.++...+. +++++.+++.+.... |.+..+|+.-..++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344433 566666666654332 33333332222222221 344555555555443 44444444444444
Q ss_pred HHcC--ChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 012800 263 VKIG--RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK-LEAAYLLLDEMEKQGFECDKYTHTILIDGL 332 (456)
Q Consensus 263 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 332 (456)
...+ .++++..+++.+.+.++. +...|+--...+...|. ++++++.++.+.+..+. |...|+.....+
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll 189 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLL 189 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 4444 245555555555554333 45555544444445554 35555555555554322 444444443333
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.81 E-value=4.6e-08 Score=73.25 Aligned_cols=111 Identities=11% Similarity=-0.054 Sum_probs=88.9
Q ss_pred HHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 012800 273 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 352 (456)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 352 (456)
..++++.... +.+...+..+...+...|++++|...|+....... .+...+..+..++...|++++|...++++....
T Consensus 8 ~~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455665543 22566677788889999999999999999887643 377788888889999999999999999988864
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC
Q 012800 353 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 386 (456)
Q Consensus 353 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (456)
+.+...+..+..++...|++++|.+.|+++...
T Consensus 86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 556788888899999999999999999887664
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.80 E-value=2.2e-07 Score=67.44 Aligned_cols=100 Identities=14% Similarity=0.084 Sum_probs=81.9
Q ss_pred CchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHH
Q 012800 5 LSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLI 84 (456)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 84 (456)
.++..|..+...+.+.|++++|+..|+++++..+. +...|..+..++.+.|++++|+..+++..+.. +.+...|..+.
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45677888888889999999999999998887643 77788888888888999999999988888764 33577788888
Q ss_pred HHHHcCCChhHHHHHHHHHHHC
Q 012800 85 AGATRNSLLSCSLDLLDEMLEM 106 (456)
Q Consensus 85 ~~~~~~~~~~~a~~~~~~~~~~ 106 (456)
.++...|++++|.+.+++..+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHh
Confidence 8888888888888888887764
No 151
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.79 E-value=1.3e-07 Score=81.62 Aligned_cols=130 Identities=8% Similarity=-0.017 Sum_probs=73.9
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC--------------HhHHHHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 012800 43 VTYNMLIDAYCQFVSFDAGYTILNRMREAGISPD--------------VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGI 108 (456)
Q Consensus 43 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 108 (456)
..+..+...+.+.|++++|+..|++..+...... ...|..+..++.+.|++++|++.+++.++...
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444444555555555555555555444321110 35566666666666666666666666666542
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 012800 109 PPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNA-LRMFRGLQ 174 (456)
Q Consensus 109 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 174 (456)
. +...+..+..+|...|++++|...|++..+.. +.+...+..+..++...|+.+++ ..+++.|.
T Consensus 228 ~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 228 N-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 55666666666666666666666666666554 44555666666666666666666 33444443
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.79 E-value=2.2e-07 Score=67.39 Aligned_cols=103 Identities=17% Similarity=0.105 Sum_probs=67.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccCC----------hhhHHH
Q 012800 324 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD----------SFTYSS 393 (456)
Q Consensus 324 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----------~~~~~~ 393 (456)
.+..+...+.+.|++++|+..|+++++.. |.+...|..+..+|.+.|++++|++.++++...+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44556666666666666666666666653 4456666666666667777777766666655431 135666
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHH
Q 012800 394 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 429 (456)
Q Consensus 394 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 429 (456)
++.++...|++++|++.|++.++. .||+.+...+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 777888888899999988888765 4565554433
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.79 E-value=6.7e-08 Score=70.20 Aligned_cols=96 Identities=15% Similarity=-0.018 Sum_probs=80.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHH
Q 012800 322 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNL 398 (456)
Q Consensus 322 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~ 398 (456)
...+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|+..++++... ++..|..++.++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4567778888889999999999999988764 567888888899999999999999999887765 667888888899
Q ss_pred HccCChhHHHHHHHHHHHcC
Q 012800 399 CKAKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 399 ~~~~~~~~A~~~~~~~~~~~ 418 (456)
...|++++|++.|+++++..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999888764
No 154
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.77 E-value=1.5e-07 Score=66.45 Aligned_cols=103 Identities=6% Similarity=-0.103 Sum_probs=78.2
Q ss_pred CCCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCC--CHhHH
Q 012800 3 GKLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISP--DVVTY 80 (456)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~ 80 (456)
.|.++..+..+...+...|++++|...++++.+..+ .+...+..+..++...|++++|.+.+++..+.. +. +...+
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 79 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVW 79 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHH
Confidence 466777788888888888888888888888887764 366677778888888888888888888877753 23 46667
Q ss_pred HHHHHHHHcC-CChhHHHHHHHHHHHCC
Q 012800 81 NSLIAGATRN-SLLSCSLDLLDEMLEMG 107 (456)
Q Consensus 81 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~ 107 (456)
..+..++... |++++|.+.++......
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 7777777778 88888888887777654
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.76 E-value=1e-07 Score=72.96 Aligned_cols=98 Identities=10% Similarity=-0.075 Sum_probs=87.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHH
Q 012800 321 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHN 397 (456)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~ 397 (456)
+...+..+...+...|++++|+..|+++++.. +.+...+..+..+|.+.|++++|+..|+++... +...|..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45678888899999999999999999998874 567889999999999999999999999988766 67889999999
Q ss_pred HHccCChhHHHHHHHHHHHcCC
Q 012800 398 LCKAKRLPSASKLLLSCLKSGV 419 (456)
Q Consensus 398 ~~~~~~~~~A~~~~~~~~~~~~ 419 (456)
|...|++++|++.|+++++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHccCHHHHHHHHHHHHHhCC
Confidence 9999999999999999998743
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.76 E-value=1.1e-07 Score=70.60 Aligned_cols=101 Identities=8% Similarity=-0.119 Sum_probs=61.5
Q ss_pred CCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHH
Q 012800 4 KLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSL 83 (456)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (456)
|.++..+..+...+.+.|++++|+..|+.+++.++. +...|..+..++...|++++|+..|+...+.+ +.++..+..+
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 92 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHH
Confidence 344555555666666666666666666666665532 55566666666666666666666666666553 2344555556
Q ss_pred HHHHHcCCChhHHHHHHHHHHHC
Q 012800 84 IAGATRNSLLSCSLDLLDEMLEM 106 (456)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~ 106 (456)
..++...|++++|.+.|+...+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666665553
No 157
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.75 E-value=6.9e-08 Score=69.41 Aligned_cols=90 Identities=16% Similarity=0.045 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccC
Q 012800 326 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAK 402 (456)
Q Consensus 326 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~ 402 (456)
..+...+.+.|++++|...++++++.. +.+...+..+..++...|++++|+..|+++... +...+..++.++...|
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 334444555555555555555555442 334455555555555555555555555544433 3344445555555555
Q ss_pred ChhHHHHHHHHHHH
Q 012800 403 RLPSASKLLLSCLK 416 (456)
Q Consensus 403 ~~~~A~~~~~~~~~ 416 (456)
++++|+..++++++
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555543
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.74 E-value=1.5e-08 Score=80.50 Aligned_cols=85 Identities=8% Similarity=-0.091 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 012800 358 EAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 434 (456)
Q Consensus 358 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 434 (456)
..+..+..++...|++++|+..++++... +...+..++.++...|++++|++.|+++++..+. +...+..+..++.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHH
Confidence 44455555555555555555555555443 4445555566666666666666666666555322 4555555555555
Q ss_pred ccCChHHHH
Q 012800 435 HSGCRREAK 443 (456)
Q Consensus 435 ~~g~~~~A~ 443 (456)
..|+.+++.
T Consensus 168 ~~~~~~~~~ 176 (198)
T 2fbn_A 168 KLKEARKKD 176 (198)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 555555544
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.73 E-value=5.2e-07 Score=64.31 Aligned_cols=93 Identities=18% Similarity=0.019 Sum_probs=50.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHc
Q 012800 324 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCK 400 (456)
Q Consensus 324 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~ 400 (456)
.+..+...+...|++++|...++.+.... +.+...+..++.++...|++++|...++++... ++..+..++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444444555555555555555554432 334445555555555555555555555554433 34455556666666
Q ss_pred cCChhHHHHHHHHHHHc
Q 012800 401 AKRLPSASKLLLSCLKS 417 (456)
Q Consensus 401 ~~~~~~A~~~~~~~~~~ 417 (456)
.|++++|.+.++++.+.
T Consensus 85 ~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHc
Confidence 66666666666666654
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.72 E-value=2.1e-08 Score=79.54 Aligned_cols=167 Identities=8% Similarity=-0.080 Sum_probs=66.1
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCC
Q 012800 13 CVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSL 92 (456)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 92 (456)
.+......|+++++.+.|+...... ......+..+...+...|++++|+..|++..+.... +. .+... .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~-~~~~~--------~ 78 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TE-EWDDQ--------I 78 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CT-TCCCH--------H
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-cc-ccchh--------h
Confidence 3344444555555555554322211 112334555566666666666666666666653211 11 00000 0
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 012800 93 LSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRG 172 (456)
Q Consensus 93 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 172 (456)
.. ..... .....+..+..+|...|++++|+..++...... +.+...+..+..++...|++++|+..|++
T Consensus 79 ~~---~~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 79 LL---DKKKN-------IEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HH---HHHHH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HH---HHHHH-------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 00 00000 001344444445555555555555555544433 33444455555555555555555555555
Q ss_pred HHhCCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 012800 173 LQKHGFVPELVTYNILIKGLCKAGRLRTAR 202 (456)
Q Consensus 173 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 202 (456)
..+.. +.+...+..+..++...++.+++.
T Consensus 148 al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 148 AASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 44431 223344444444444444444333
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.71 E-value=1.1e-06 Score=62.59 Aligned_cols=100 Identities=13% Similarity=0.027 Sum_probs=70.6
Q ss_pred chHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 012800 6 STRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIA 85 (456)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (456)
++..+..+...+...|++++|...++.+.+..+ .+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 456677777777788888888888888777653 356677777777777777777777777776653 234566666677
Q ss_pred HHHcCCChhHHHHHHHHHHHCC
Q 012800 86 GATRNSLLSCSLDLLDEMLEMG 107 (456)
Q Consensus 86 ~~~~~~~~~~a~~~~~~~~~~~ 107 (456)
++...|++++|.+.+++..+.+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhhHHHHHHHHHHHHHcC
Confidence 7777777777777777766643
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.69 E-value=2.1e-07 Score=65.69 Aligned_cols=97 Identities=19% Similarity=0.105 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC--CHHhHHHHHHH
Q 012800 358 EAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI--LKSAQKAVVDG 432 (456)
Q Consensus 358 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~ 432 (456)
..+..++..+...|++++|...++++... +...+..++.++...|++++|++.++++++.. +. +...+..++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 34444555555555555555555554433 44555556666666666666666666666552 22 35556666666
Q ss_pred HHcc-CChHHHHHHHHHHHhcccC
Q 012800 433 LRHS-GCRREAKKIQSKIRMAKIS 455 (456)
Q Consensus 433 ~~~~-g~~~~A~~~~~~~~~~~~~ 455 (456)
+... |++++|.+.++++....++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccC
Confidence 6666 6666666666666655443
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.68 E-value=3.8e-07 Score=67.25 Aligned_cols=98 Identities=7% Similarity=-0.200 Sum_probs=85.6
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHH
Q 012800 320 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVH 396 (456)
Q Consensus 320 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~ 396 (456)
.+...+..+...+...|++++|...++.+.... +.+...+..+..++...|++++|...++++... ++..|..++.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 467788889999999999999999999988874 566888999999999999999999999988765 6778889999
Q ss_pred HHHccCChhHHHHHHHHHHHcC
Q 012800 397 NLCKAKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 397 ~~~~~~~~~~A~~~~~~~~~~~ 418 (456)
++...|++++|+..|+++++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHC
Confidence 9999999999999999998663
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.68 E-value=4.2e-07 Score=65.89 Aligned_cols=99 Identities=16% Similarity=0.101 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCC--CCC----HhHH
Q 012800 7 TRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGI--SPD----VVTY 80 (456)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 80 (456)
+..+..+...+.+.|++++|+..|+++++..+. +...|..+..+|.+.|++++|++.+++..+.+. .++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 345667777888888888888888888877643 677777788888888888888888877765421 111 1245
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHC
Q 012800 81 NSLIAGATRNSLLSCSLDLLDEMLEM 106 (456)
Q Consensus 81 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 106 (456)
..+..++...|++++|++.|++.+..
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55666666677777777777666653
No 165
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.67 E-value=1.9e-06 Score=77.66 Aligned_cols=193 Identities=7% Similarity=0.015 Sum_probs=105.1
Q ss_pred HHHHHhcCchhHHHHHHHHHHHcCCCcCh----------------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCc-cC
Q 012800 224 MKCCFRNRKYKLGLEILSAMKRKGYTFDG----------------FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ-LD 286 (456)
Q Consensus 224 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 286 (456)
...+...|++++|.+.+..+.+....... ..+..+...|...|++++|.+.+..+...... ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 44566778888888888887766422111 12455666677777777777777665542101 11
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC--
Q 012800 287 I----VSYNTLINLYCKEGKLEAAYLLLDEMEK----QGFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKI--GF-- 353 (456)
Q Consensus 287 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-- 353 (456)
. .+.+.+...+...|+++.|..+++.... .+..+ -..++..+...+...|++++|..+++.+... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1122223333345666777766666543 11111 2345556666666777777777776665432 11
Q ss_pred -CCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC------C----hhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 012800 354 -DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK------D----SFTYSSMVHNLCKAKRLPSASKLLLSCLK 416 (456)
Q Consensus 354 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 416 (456)
+....++..++..|...|++++|..+++++... + ...+..++..+...|++++|...|.++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 111345556666666666666666666655432 1 12344445555566666666666666553
No 166
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.67 E-value=6e-05 Score=63.75 Aligned_cols=197 Identities=9% Similarity=0.003 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCC-hHHHHHH
Q 012800 93 LSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK--PDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRY-TDNALRM 169 (456)
Q Consensus 93 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~ 169 (456)
+++++++++.+....++ +..+|+.-..++...|+ +++++.+++.+.+.+ +.+..+|+.-..++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 34455555555544332 44444444444444442 455555555555444 4444555544444444444 3555555
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-----
Q 012800 170 FRGLQKHGFVPELVTYNILIKGLCKA--------------GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRN----- 230 (456)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 230 (456)
++.+.+.. +-|...|+.....+... +.++++++.+.......+. |...|+-+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccc
Confidence 55555442 22444444443333332 2355555555555543322 444444332222222
Q ss_pred ------CchhHHHHHHHHHHHcCCCcChhhHHHHHHH---HHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 012800 231 ------RKYKLGLEILSAMKRKGYTFDGFGYCTVIAA---FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 295 (456)
Q Consensus 231 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 295 (456)
+.++++++.++++.+.. |.+...+..++.. ....+..+++...+.++.+.++. ...-|..+..
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~-pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~-r~~~y~d~~~ 317 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELE-PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLRS 317 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG-GHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhC-cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc-hhhHHHHHHH
Confidence 34667777777777664 2232222222211 11345667777788877765322 3333444433
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.64 E-value=9.4e-07 Score=67.48 Aligned_cols=102 Identities=7% Similarity=-0.046 Sum_probs=82.6
Q ss_pred CCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHH
Q 012800 4 KLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSL 83 (456)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (456)
+.++..+..+...+.+.|++++|+..|+++++..+. +...|..+..++.+.|++++|+..|++..+.. +.+...|..+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 446677888888888889999999999988887643 77788888888888888888888888888764 3357778888
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCC
Q 012800 84 IAGATRNSLLSCSLDLLDEMLEMG 107 (456)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~ 107 (456)
..++...|++++|.+.|++..+..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC
Confidence 888888888888888888887754
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.64 E-value=6.2e-07 Score=65.30 Aligned_cols=108 Identities=11% Similarity=0.085 Sum_probs=68.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---C-------hhhHH
Q 012800 323 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---D-------SFTYS 392 (456)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~-------~~~~~ 392 (456)
..+..+...+...|++++|...++.+.... +.+...+..++.++...|++++|...++++... + ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 344555555666666666666666665542 445555666666666666666666666665543 2 55677
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 012800 393 SMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 433 (456)
Q Consensus 393 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 433 (456)
.++.++...|++++|.+.++++++.. |++.....+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 77888888888888888888888763 4555555554443
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.63 E-value=9.8e-07 Score=64.97 Aligned_cols=102 Identities=14% Similarity=-0.006 Sum_probs=68.0
Q ss_pred CCCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHH
Q 012800 3 GKLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNS 82 (456)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (456)
.+.++..|..+...+...|++++|+..|+.+++..+. +...+..+..++...|++++|...++...+.. +.+...+..
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 82 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFF 82 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHH
Confidence 3456667777777777777777777777777766543 56667777777777777777777777766653 234556666
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHC
Q 012800 83 LIAGATRNSLLSCSLDLLDEMLEM 106 (456)
Q Consensus 83 l~~~~~~~~~~~~a~~~~~~~~~~ 106 (456)
+..++...|++++|.+.|++..+.
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 666666777777777666666553
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=1.9e-06 Score=64.30 Aligned_cols=109 Identities=19% Similarity=0.010 Sum_probs=64.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHH
Q 012800 321 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN----LEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSS 393 (456)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ 393 (456)
+...+..+...+...|++++|...+++..+. .|+ ...+..+..++...|++++|...++++... +...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3445555555566666666666666666554 233 455555666666666666666666655443 4556666
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 012800 394 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 432 (456)
Q Consensus 394 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 432 (456)
++.++...|++++|.+.++++++..+. +...+..+...
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHH
Confidence 667777777777777777777665422 44444444443
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.61 E-value=4.8e-07 Score=65.91 Aligned_cols=112 Identities=8% Similarity=0.001 Sum_probs=81.1
Q ss_pred chHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCC--CCC----HhH
Q 012800 6 STRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGI--SPD----VVT 79 (456)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~ 79 (456)
.+..+..+...+...|++++|...|+.+.+..+ .+...+..+..++...|++++|...++...+... .++ ..+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 456778888888888999999999998888764 3677788888888888888888888888776521 111 556
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 012800 80 YNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMH 120 (456)
Q Consensus 80 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 120 (456)
+..+..++...|++++|.+.++...+.. |+......+..
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 120 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 6677777777788888888777777643 34444444433
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=2.1e-06 Score=64.01 Aligned_cols=101 Identities=14% Similarity=0.027 Sum_probs=60.7
Q ss_pred CCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCC---HHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHH
Q 012800 4 KLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPD---VVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTY 80 (456)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 80 (456)
+.+...+..+...+...|++++|+..|+++.+..+. + ...+..+..++...|++++|+..++...+.. +.+...+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 345566666666666777777777777766654422 1 4455666666666666666666666665542 2244555
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHC
Q 012800 81 NSLIAGATRNSLLSCSLDLLDEMLEM 106 (456)
Q Consensus 81 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 106 (456)
..+..++...|++++|.+.+++....
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 55566666666666666666666554
No 173
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.57 E-value=4.3e-07 Score=67.10 Aligned_cols=29 Identities=17% Similarity=0.037 Sum_probs=19.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012800 323 YTHTILIDGLCKAGNIKGARLHLEYMNKI 351 (456)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (456)
..+......+...|++++|+..|++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l 40 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI 40 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 34555566667777777777777777665
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.56 E-value=5.8e-07 Score=64.49 Aligned_cols=94 Identities=11% Similarity=-0.093 Sum_probs=57.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcc
Q 012800 360 YNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 436 (456)
Q Consensus 360 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 436 (456)
+..+...+.+.|++++|+..|+++... +...|..++.++...|++++|+..++++++..+. +...+..++.++...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 344455566666666666666666544 5556666666666666666666666666665433 555666666666666
Q ss_pred CChHHHHHHHHHHHhccc
Q 012800 437 GCRREAKKIQSKIRMAKI 454 (456)
Q Consensus 437 g~~~~A~~~~~~~~~~~~ 454 (456)
|++++|+..+++..+.++
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 666666666666655544
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.55 E-value=4e-06 Score=75.49 Aligned_cols=198 Identities=10% Similarity=-0.039 Sum_probs=144.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCH----------------HHHHHHHHHHHhcCchhHHHHHHHHHHHcCCC-cC
Q 012800 189 IKGLCKAGRLRTARWILKELGDSGHAPNA----------------ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-FD 251 (456)
Q Consensus 189 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 251 (456)
...+.+.|++++|.+.|..+.+....... ..+..+...|...|++++|.+.+..+.+.... ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45678899999999999999875443211 23677889999999999999999988754211 11
Q ss_pred h----hhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCc-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC-
Q 012800 252 G----FGYCTVIAAFVKIGRLKEATDYMEQMVTD----GVQ-LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ--GFE- 319 (456)
Q Consensus 252 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~- 319 (456)
. .+.+.+...+...|+.+.+..+++..... +.. .-..++..+...|...|++++|..+++++... +..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12223333444568999999999887653 222 23567788999999999999999999988642 111
Q ss_pred -c-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHhccC
Q 012800 320 -C-DKYTHTILIDGLCKAGNIKGARLHLEYMNKI--GFDSN----LEAYNCIVDRLGKDGKIDHAINVFESMEVK 386 (456)
Q Consensus 320 -~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (456)
+ ...++..++..|...|++++|..++++.... .+..+ ...+..++..+...|++++|...|.++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 1 2457888899999999999999999987643 12212 345666677788899999999999887765
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.54 E-value=1.1e-06 Score=66.66 Aligned_cols=61 Identities=15% Similarity=0.048 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-cC----HHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012800 289 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-CD----KYTHTILIDGLCKAGNIKGARLHLEYMN 349 (456)
Q Consensus 289 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 349 (456)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555566666666666666555432100 01 1244455555556666666666655544
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.52 E-value=1.2e-06 Score=63.67 Aligned_cols=93 Identities=9% Similarity=-0.032 Sum_probs=76.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHhccC---C---hhhHHHHH
Q 012800 325 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL---EAYNCIVDRLGKDGKIDHAINVFESMEVK---D---SFTYSSMV 395 (456)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~---~~~~~~l~ 395 (456)
+..+...+...|++++|...++.+.+.. +.+. ..+..+..++...|++++|...|+++... + +..+..++
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 4556777889999999999999988763 3333 57788888999999999999999988765 3 56688889
Q ss_pred HHHHccCChhHHHHHHHHHHHcC
Q 012800 396 HNLCKAKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 396 ~~~~~~~~~~~A~~~~~~~~~~~ 418 (456)
.++...|++++|...|+++++..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999999998774
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.52 E-value=9.3e-07 Score=67.16 Aligned_cols=131 Identities=15% Similarity=0.015 Sum_probs=104.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhCCCHHHHHHHHHHhccC---------C
Q 012800 322 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGF-DSN----LEAYNCIVDRLGKDGKIDHAINVFESMEVK---------D 387 (456)
Q Consensus 322 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~ 387 (456)
..++..+...+...|++++|...+++..+... .++ ...+..+...+...|++++|.+.++++... .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 34677888889999999999999999875410 111 246788888999999999999999987654 1
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHcC----CC-CCHHhHHHHHHHHHccCChHHHHHHHHHHHhc
Q 012800 388 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSG----VR-ILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 452 (456)
Q Consensus 388 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 452 (456)
...+..++..+...|++++|.+.++++++.. .. ....++..++.++...|++++|...+++..+.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567888999999999999999999987541 11 12356778889999999999999999988764
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.48 E-value=1.7e-06 Score=65.87 Aligned_cols=99 Identities=12% Similarity=-0.051 Sum_probs=81.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 012800 321 DKYTHTILIDGLCKAGNIKGARLHLEYMNKI--------G---------FDSNLEAYNCIVDRLGKDGKIDHAINVFESM 383 (456)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 383 (456)
....+......+.+.|++++|...|...+.. . -+.+...+..+..+|.+.|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3556778888999999999999999998765 1 0223467888888999999999999999988
Q ss_pred ccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 012800 384 EVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 419 (456)
Q Consensus 384 ~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 419 (456)
... ++..|..++.+|...|++++|+..|+++++..+
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 765 677888899999999999999999999987743
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.47 E-value=4.9e-06 Score=60.37 Aligned_cols=94 Identities=12% Similarity=-0.027 Sum_probs=75.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 012800 291 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDK---YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN---LEAYNCIV 364 (456)
Q Consensus 291 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 364 (456)
..+...+...|++++|...++.+.+.... +. ..+..+..++...|++++|...++.+.+.. +.+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 44667788899999999999998875322 23 477788888899999999999999988763 334 67788888
Q ss_pred HHHHhCCCHHHHHHHHHHhccC
Q 012800 365 DRLGKDGKIDHAINVFESMEVK 386 (456)
Q Consensus 365 ~~~~~~g~~~~a~~~~~~~~~~ 386 (456)
.++...|++++|...|+++...
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999999888765
No 181
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.46 E-value=1.9e-05 Score=73.02 Aligned_cols=171 Identities=9% Similarity=-0.070 Sum_probs=128.6
Q ss_pred ChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC
Q 012800 267 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK----------LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 336 (456)
Q Consensus 267 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 336 (456)
..++|.+.+++++..++. +..+|+.-..++...|+ ++++++.++.+.+...+ +..+|..-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 345667777777776444 56666666666666666 78888888888876543 6777777777777888
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHhccC---ChhhHHHHHHHHHcc---------
Q 012800 337 --NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG-KIDHAINVFESMEVK---DSFTYSSMVHNLCKA--------- 401 (456)
Q Consensus 337 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~--------- 401 (456)
+++++...++++.+.. +-+...|+.-..++.+.| .++++++.++++.+. +..+|.....++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 6688888888888875 567788888777888888 788888888888776 667777777766653
Q ss_pred -----CChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHH
Q 012800 402 -----KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 441 (456)
Q Consensus 402 -----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 441 (456)
+.++++++.+++++...+. |...|......+.+.|..++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5578999999999988654 88899988888888776443
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.46 E-value=1.8e-06 Score=75.37 Aligned_cols=137 Identities=12% Similarity=-0.038 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012800 287 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 366 (456)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 366 (456)
...+..+...+.+.|++++|...|++..+. .+... ..... ...... .+.+...+..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~~~-~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGAKL-QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHGGG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHHHH-HHHHHHHHHHHHHH
Confidence 344556666667777777777777666542 00000 00000 011111 12235667777778
Q ss_pred HHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHH
Q 012800 367 LGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 443 (456)
Q Consensus 367 ~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 443 (456)
|.+.|++++|++.++++... +...|..++.+|...|++++|++.|+++++..+. +...+..+..++...++.+++.
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877765 5667778888888888888888888888877533 6677777777777777777665
Q ss_pred H
Q 012800 444 K 444 (456)
Q Consensus 444 ~ 444 (456)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.44 E-value=5.1e-07 Score=81.95 Aligned_cols=116 Identities=12% Similarity=-0.043 Sum_probs=58.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 012800 296 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 375 (456)
Q Consensus 296 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 375 (456)
.+.+.|++++|.+.+++..+... .+...+..+..++.+.|++++|...++++.+.. +.+...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 44455666666666666555421 235555555566666666666666666655542 3345555555555555555555
Q ss_pred HHHHHHHhccC---ChhhHHHHHHH--HHccCChhHHHHHHHH
Q 012800 376 AINVFESMEVK---DSFTYSSMVHN--LCKAKRLPSASKLLLS 413 (456)
Q Consensus 376 a~~~~~~~~~~---~~~~~~~l~~~--~~~~~~~~~A~~~~~~ 413 (456)
|.+.|+++.+. +...+..+..+ +.+.|++++|++.+++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 55555555443 33334444333 4455555555555543
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.44 E-value=2.8e-06 Score=77.08 Aligned_cols=120 Identities=15% Similarity=0.083 Sum_probs=76.3
Q ss_pred HHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCH
Q 012800 224 MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 303 (456)
Q Consensus 224 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 303 (456)
...+...|++++|...++++.+.. +.+...+..+..++.+.|++++|...+++..+.... +...+..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 344566777777777777777664 445667777777777777777777777777776432 566677777777777777
Q ss_pred HHHHHHHHHHHHcCCCcCHHhHHHHHHH--HHhcCCHHHHHHHHH
Q 012800 304 EAAYLLLDEMEKQGFECDKYTHTILIDG--LCKAGNIKGARLHLE 346 (456)
Q Consensus 304 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 346 (456)
++|...+++..+.... +...+..+..+ +.+.|++++|...++
T Consensus 91 ~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777777664321 33344444444 666677777777766
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.44 E-value=2.4e-06 Score=77.21 Aligned_cols=149 Identities=12% Similarity=-0.036 Sum_probs=105.0
Q ss_pred CChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC--------------HHhHHHHHHH
Q 012800 266 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD--------------KYTHTILIDG 331 (456)
Q Consensus 266 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~ 331 (456)
+++++|...++...... +-....+..+...+.+.|++++|...|++..+...... ...|..+..+
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34445555544333321 12456777888889999999999999999887532211 4677788888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHH
Q 012800 332 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSAS 408 (456)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~ 408 (456)
+.+.|++++|+..++++++.. +.+...+..+..+|...|++++|+..|+++... +..++..+..++.+.++.+++.
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888764 556778888888888888888888888887766 5567777888888888777765
Q ss_pred H-HHHHHHH
Q 012800 409 K-LLLSCLK 416 (456)
Q Consensus 409 ~-~~~~~~~ 416 (456)
+ .+++|..
T Consensus 406 ~~~~~~~f~ 414 (457)
T 1kt0_A 406 RRIYANMFK 414 (457)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 3 4555543
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.42 E-value=4.5e-07 Score=64.70 Aligned_cols=83 Identities=17% Similarity=0.035 Sum_probs=50.0
Q ss_pred cCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHH
Q 012800 335 AGNIKGARLHLEYMNKIG--FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASK 409 (456)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~ 409 (456)
.|++++|+..|+++++.+ -+.+...+..+..+|...|++++|++.|+++... ++..+..++.++...|++++|++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 456666666666666542 1233455666666666666666666666666544 55566666677777777777777
Q ss_pred HHHHHHHc
Q 012800 410 LLLSCLKS 417 (456)
Q Consensus 410 ~~~~~~~~ 417 (456)
.++++++.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777655
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.42 E-value=5.9e-07 Score=77.62 Aligned_cols=148 Identities=16% Similarity=0.022 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012800 286 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 365 (456)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 365 (456)
....+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...+..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 3556777778888889999999999988775 333321 111122222221110 124555566
Q ss_pred HHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHH-HHccCChHH
Q 012800 366 RLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG-LRHSGCRRE 441 (456)
Q Consensus 366 ~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 441 (456)
+|.+.|++++|+..++++... +...|..++.+|...|++++|+..|+++++..+. +...+..+..+ ....+..+.
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665543 4555666666666666666666666666544322 33444444443 223445555
Q ss_pred HHHHHHHHHhcc
Q 012800 442 AKKIQSKIRMAK 453 (456)
Q Consensus 442 A~~~~~~~~~~~ 453 (456)
+...|+++....
T Consensus 318 a~~~~~~~l~~~ 329 (338)
T 2if4_A 318 QKEMYKGIFKGK 329 (338)
T ss_dssp ------------
T ss_pred HHHHHHHhhCCC
Confidence 666666655443
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.40 E-value=9.5e-07 Score=63.00 Aligned_cols=86 Identities=13% Similarity=0.017 Sum_probs=71.6
Q ss_pred hCCCHHHHHHHHHHhccC------ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHH
Q 012800 369 KDGKIDHAINVFESMEVK------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 442 (456)
Q Consensus 369 ~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 442 (456)
..|++++|+..|+++... +...+..++.+|...|++++|++.++++++..+. +...+..++.++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 468899999999988765 3567889999999999999999999999988654 788899999999999999999
Q ss_pred HHHHHHHHhcccC
Q 012800 443 KKIQSKIRMAKIS 455 (456)
Q Consensus 443 ~~~~~~~~~~~~~ 455 (456)
...+++..+..+.
T Consensus 81 ~~~~~~al~~~p~ 93 (117)
T 3k9i_A 81 VELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCC
Confidence 9999998876543
No 189
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.39 E-value=3.7e-06 Score=75.95 Aligned_cols=129 Identities=7% Similarity=-0.030 Sum_probs=78.5
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCC--------------CHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCC
Q 012800 44 TYNMLIDAYCQFVSFDAGYTILNRMREAGISP--------------DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIP 109 (456)
Q Consensus 44 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 109 (456)
.+..+...+.+.|++++|+..|++..+..... ....|..+..++.+.|++++|+..+++.++....
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 44444445555555555555555444431110 1456677777777777777777777777775433
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHH-HHHHHH
Q 012800 110 PDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALR-MFRGLQ 174 (456)
Q Consensus 110 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~ 174 (456)
+...|..+..+|...|++++|...|+++.+.. +.+...+..+..++.+.++.+++.+ .+..|.
T Consensus 350 -~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 350 -NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777888888888887777664 4455667777777777777766553 344443
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.38 E-value=1.8e-06 Score=65.71 Aligned_cols=103 Identities=10% Similarity=-0.066 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CC---------CcCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 012800 286 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ--------GF---------ECDKYTHTILIDGLCKAGNIKGARLHLEYM 348 (456)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 348 (456)
....+......+.+.|++++|...|...... .. +.+...+..+..++.+.|++++|...++.+
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4567788889999999999999999998764 10 113457888899999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccCChh
Q 012800 349 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF 389 (456)
Q Consensus 349 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 389 (456)
++.. +.+...+..++.++...|++++|...|+++...++.
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 9874 667889999999999999999999999998876443
No 191
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.34 E-value=1.3e-05 Score=58.83 Aligned_cols=110 Identities=12% Similarity=-0.064 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHH
Q 012800 301 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK----DGKIDHA 376 (456)
Q Consensus 301 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 376 (456)
+++++|...|++..+.| .|+.. +...|...+.+++|..+|++..+.| +......|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35667777777777665 22322 5555656666677777777776654 55666666666666 6677777
Q ss_pred HHHHHHhccC-ChhhHHHHHHHHHc----cCChhHHHHHHHHHHHcC
Q 012800 377 INVFESMEVK-DSFTYSSMVHNLCK----AKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 377 ~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 418 (456)
.+.|+++.+. ++..+..+...|.. .+++++|.+.|+++.+.|
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777776655 66667777777766 667777777777776665
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.30 E-value=3.7e-06 Score=72.61 Aligned_cols=147 Identities=15% Similarity=0.029 Sum_probs=86.7
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 012800 252 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 331 (456)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 331 (456)
...+..+...+.+.|++++|...|++.+.. .|+... +...|+.+++...+ ....+..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHH
Confidence 445667777888999999999999998875 233221 22334444443222 12367888889
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHH-HccCChhHH
Q 012800 332 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNL-CKAKRLPSA 407 (456)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~-~~~~~~~~A 407 (456)
+.+.|++++|...++++++.. +.+...+..+..+|...|++++|...|+++... +...+..+.... ...+..+++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998864 567888999999999999999999999998776 455666665553 345677788
Q ss_pred HHHHHHHHHcC
Q 012800 408 SKLLLSCLKSG 418 (456)
Q Consensus 408 ~~~~~~~~~~~ 418 (456)
.+.|+++....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88999887553
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.29 E-value=8.6e-06 Score=71.12 Aligned_cols=138 Identities=14% Similarity=-0.077 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 012800 8 RLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGA 87 (456)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 87 (456)
..+..+...+.+.|++++|+..|+++++.-. ... .... .+...+. .+.+...|..+..++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~--~~~----------~~~~-------~~~~~~~-~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE--GSR----------AAAE-------DADGAKL-QPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HHH----------HHSC-------HHHHGGG-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh--cCc----------cccC-------hHHHHHH-HHHHHHHHHHHHHHH
Confidence 3456666777777777777777777765210 000 0000 0000001 012344555566666
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHH
Q 012800 88 TRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNAL 167 (456)
Q Consensus 88 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 167 (456)
.+.|++++|++.+++.++... .+...+..+..+|...|++++|.+.|++..+.. +.+...+..+..++...++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665432 245556666666666666666666666665543 334555555555555555555544
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.27 E-value=7.4e-05 Score=69.10 Aligned_cols=170 Identities=8% Similarity=-0.052 Sum_probs=128.2
Q ss_pred hhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcC-
Q 012800 233 YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR----------LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG- 301 (456)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 301 (456)
.++|++.++.+...+ +.+..+|+.--.++...|+ ++++.+.++.+...+++ +..+|..-..++.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 456777888887775 5556666665555666666 78888888888887554 7788887777788888
Q ss_pred -CHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC---------
Q 012800 302 -KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG-NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD--------- 370 (456)
Q Consensus 302 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 370 (456)
+++++++.++++.+.... +..+|+.-..++.+.| .++++.+.+.++++.. +.|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 668999999998887544 7778887777777888 7888888888888764 56777887777766653
Q ss_pred -----CCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhH
Q 012800 371 -----GKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPS 406 (456)
Q Consensus 371 -----g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 406 (456)
+.++++++.++++... +..+|..+...+.+.+++++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 4578888888887754 77889888888888777544
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.26 E-value=2.1e-05 Score=57.68 Aligned_cols=108 Identities=7% Similarity=-0.144 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC-ChhhHHHHHHHHHc----cCChhHHHHHH
Q 012800 337 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-DSFTYSSMVHNLCK----AKRLPSASKLL 411 (456)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~ 411 (456)
++++|..+|++..+.+ .++.. +...|...+.+++|.+.|++.... ++..+..+...|.. .+++++|++.|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 4556666666665554 22222 555555555566666666655554 55556666666655 55666666666
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHc----cCChHHHHHHHHHHHhc
Q 012800 412 LSCLKSGVRILKSAQKAVVDGLRH----SGCRREAKKIQSKIRMA 452 (456)
Q Consensus 412 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 452 (456)
+++.+.| ++..+..+...|.. .++.++|..++++.-+.
T Consensus 85 ~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 85 SKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 6665543 44555555555555 56666666666655443
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.25 E-value=2.3e-05 Score=57.92 Aligned_cols=64 Identities=16% Similarity=0.050 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCC------CH-----HhHHHHHHHHHccCChhHHHHHHHHHHh
Q 012800 7 TRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLP------DV-----VTYNMLIDAYCQFVSFDAGYTILNRMRE 70 (456)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 70 (456)
...+......+.+.|++++|+..|+++++..+.. +. ..|..+..++.+.|++++|+..+++..+
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455666777888888888888888888765441 11 1444455555555555555555554443
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.23 E-value=7.1e-06 Score=73.98 Aligned_cols=88 Identities=14% Similarity=-0.126 Sum_probs=41.4
Q ss_pred HHhcCCHHHHHHHHHHHHHc---CCCc----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCCCHHHHHH
Q 012800 297 YCKEGKLEAAYLLLDEMEKQ---GFEC----DKYTHTILIDGLCKAGNIKGARLHLEYMNKI-----G--FDSNLEAYNC 362 (456)
Q Consensus 297 ~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ 362 (456)
+...|++++|..++++..+. -+.| ...+++.|..+|...|++++|..++++++.. | .+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33455566665555554321 0111 1234555555555555555555555554321 1 0111334445
Q ss_pred HHHHHHhCCCHHHHHHHHHHhc
Q 012800 363 IVDRLGKDGKIDHAINVFESME 384 (456)
Q Consensus 363 l~~~~~~~g~~~~a~~~~~~~~ 384 (456)
|...|...|++++|..+++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555555555555443
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.15 E-value=1.2e-06 Score=61.61 Aligned_cols=89 Identities=15% Similarity=0.084 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC------HHhHH
Q 012800 357 LEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL------KSAQK 427 (456)
Q Consensus 357 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~ 427 (456)
...+..+...+...|++++|++.|+++... ++..|..++.++...|++++|++.++++++..+. + ...+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~ 82 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHH
Confidence 344445555555555555555555554433 4455555666666666666666666666544322 2 33444
Q ss_pred HHHHHHHccCChHHHHHHH
Q 012800 428 AVVDGLRHSGCRREAKKIQ 446 (456)
Q Consensus 428 ~l~~~~~~~g~~~~A~~~~ 446 (456)
.++.++...|+.++|...+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHhHhhhHhHH
Confidence 4555555555555444433
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.13 E-value=2.1e-05 Score=70.87 Aligned_cols=119 Identities=10% Similarity=-0.034 Sum_probs=59.1
Q ss_pred HhcCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHhccC-----------ChhhHHHH
Q 012800 333 CKAGNIKGARLHLEYMNKI---GFDS----NLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----------DSFTYSSM 394 (456)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~l 394 (456)
...|++++|+.++++.++. -+.+ ...+++.|+.+|...|++++|..+++++... ...+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3455566666555554422 0111 1344555555666666666666655554432 22345555
Q ss_pred HHHHHccCChhHHHHHHHHHHHc-----CCC-CC-HHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 012800 395 VHNLCKAKRLPSASKLLLSCLKS-----GVR-IL-KSAQKAVVDGLRHSGCRREAKKIQSKIRM 451 (456)
Q Consensus 395 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 451 (456)
+..|...|++++|+.+++++++. |.. |+ ..+...+..++...|.+++|...+.+++.
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665555421 221 11 12233444455555556666666655554
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.10 E-value=4e-06 Score=58.92 Aligned_cols=92 Identities=8% Similarity=-0.116 Sum_probs=63.8
Q ss_pred CchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-------H
Q 012800 5 LSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPD-------V 77 (456)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~ 77 (456)
+++..+..+...+...|++++|+..|+++++..+. +...+..+..++.+.|++++|++.+++..+.. |+ .
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~ 78 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRS 78 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHH
Confidence 45667778888888888888888888888877643 66777788888888888888888888887653 33 3
Q ss_pred hHHHHHHHHHHcCCChhHHHHH
Q 012800 78 VTYNSLIAGATRNSLLSCSLDL 99 (456)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~a~~~ 99 (456)
..+..+..++...|+.+.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhH
Confidence 3444445555555554444433
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.09 E-value=4.4e-05 Score=51.08 Aligned_cols=81 Identities=12% Similarity=0.104 Sum_probs=55.2
Q ss_pred chHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 012800 6 STRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIA 85 (456)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (456)
++..+..+...+...|++++|+..++++.+..+ .+...+..+..++.+.|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 456777777777888888888888888777653 356677777777777777777777777776653 224455555544
Q ss_pred HHH
Q 012800 86 GAT 88 (456)
Q Consensus 86 ~~~ 88 (456)
++.
T Consensus 86 ~~~ 88 (91)
T 1na3_A 86 AKQ 88 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.08 E-value=1.7e-05 Score=56.13 Aligned_cols=76 Identities=16% Similarity=0.055 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 012800 341 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 417 (456)
Q Consensus 341 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 417 (456)
+...++.+.+.. +.+...+..+...+...|++++|+..|+++... +...|..++.++...|++++|...|+++++.
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344444444432 334445555555555555555555555544433 3444555555555555555555555555443
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.04 E-value=2.1e-05 Score=55.64 Aligned_cols=78 Identities=15% Similarity=0.078 Sum_probs=67.3
Q ss_pred HHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 012800 375 HAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 451 (456)
Q Consensus 375 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 451 (456)
+|++.|+++... ++..+..++.++...|++++|+..++++++..+. +...+..++.++...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566777776654 7788999999999999999999999999988643 678899999999999999999999999876
Q ss_pred cc
Q 012800 452 AK 453 (456)
Q Consensus 452 ~~ 453 (456)
..
T Consensus 82 ~~ 83 (115)
T 2kat_A 82 AA 83 (115)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.03 E-value=3.8e-05 Score=51.45 Aligned_cols=79 Identities=14% Similarity=0.145 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 012800 357 LEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 433 (456)
Q Consensus 357 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 433 (456)
...+..+...+...|++++|...|+++... +...+..++.++...|++++|.+.++++++..+. +...+..++.++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 344555555666666666666666655443 4555666666777777777777777777665432 555555555555
Q ss_pred Hcc
Q 012800 434 RHS 436 (456)
Q Consensus 434 ~~~ 436 (456)
...
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.98 E-value=9.9e-06 Score=59.72 Aligned_cols=86 Identities=10% Similarity=0.014 Sum_probs=66.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH----------HHHHHHHHHhccC---ChhhHHHHHHHH
Q 012800 332 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI----------DHAINVFESMEVK---DSFTYSSMVHNL 398 (456)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~---~~~~~~~l~~~~ 398 (456)
..+.+.+++|...++...+.. +.+...|..+..++...+++ ++|+..|+++... +..+|..++.+|
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 345677889999999988875 66788888888888887765 4888888877665 566788888888
Q ss_pred HccC-----------ChhHHHHHHHHHHHcC
Q 012800 399 CKAK-----------RLPSASKLLLSCLKSG 418 (456)
Q Consensus 399 ~~~~-----------~~~~A~~~~~~~~~~~ 418 (456)
...| ++++|++.|+++++.+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 7764 7888888888888664
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.93 E-value=6e-05 Score=51.64 Aligned_cols=69 Identities=14% Similarity=-0.032 Sum_probs=54.8
Q ss_pred CCCCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 012800 2 FGKLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREA 71 (456)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 71 (456)
..|.++..+..+...+...|++++|+..|+++++.++. +...|..+..++...|++++|++.|++..+.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677888888888888889999999999988887754 6668888888888888888888888877653
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.93 E-value=5.1e-05 Score=55.95 Aligned_cols=98 Identities=10% Similarity=0.035 Sum_probs=71.7
Q ss_pred HHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChh----------HHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 012800 17 FCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFD----------AGYTILNRMREAGISPDVVTYNSLIAG 86 (456)
Q Consensus 17 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (456)
..+.+.+++|++.++..++..+. +...|..+..++...++++ +|+..|++..+.+ +.+..+|..+..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 45678899999999999998864 8888988888888887754 8888888887764 2356677777777
Q ss_pred HHcCC-----------ChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 012800 87 ATRNS-----------LLSCSLDLLDEMLEMGIPPDVWSYNSL 118 (456)
Q Consensus 87 ~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l 118 (456)
|...| ++++|++.|++.++. .|+...|...
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~a 130 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKS 130 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 77654 677777777777764 3554444333
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.92 E-value=6e-05 Score=51.64 Aligned_cols=82 Identities=11% Similarity=0.026 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCC-CCCHHhHHHH
Q 012800 354 DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV-RILKSAQKAV 429 (456)
Q Consensus 354 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l 429 (456)
+.+...+..+..++...|++++|++.|+++... ++..|..++.+|...|++++|++.++++++... .++......+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l 83 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSEL 83 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHH
Confidence 446778888888999999999999999988765 567888889999999999999999998876522 2344444444
Q ss_pred HHHHHc
Q 012800 430 VDGLRH 435 (456)
Q Consensus 430 ~~~~~~ 435 (456)
...+..
T Consensus 84 ~~~l~~ 89 (100)
T 3ma5_A 84 QDAKLK 89 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.68 E-value=0.001 Score=56.62 Aligned_cols=64 Identities=11% Similarity=-0.007 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC--ChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 012800 354 DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 417 (456)
Q Consensus 354 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 417 (456)
+.+...+..+...+...|++++|...++++... +...|..+...+.-.|++++|.+.++++...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 334444444444444445555555555555444 2223334444455555555555555555544
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.67 E-value=0.0021 Score=54.75 Aligned_cols=143 Identities=10% Similarity=0.005 Sum_probs=89.2
Q ss_pred CCCCHHhHHHHHHHHHc--c---CChhHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHc----CCCh-hHH---HHHHHHH
Q 012800 38 VLPDVVTYNMLIDAYCQ--F---VSFDAGYTILNRMREAGISPD-VVTYNSLIAGATR----NSLL-SCS---LDLLDEM 103 (456)
Q Consensus 38 ~~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~----~~~~-~~a---~~~~~~~ 103 (456)
++.+...|...+++... . .+..+|+.+|++..+.. |+ ...|..+.-++.. .+.. ... ...++..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 34567777776665432 2 23467888888887763 43 3344433333321 1111 111 1122211
Q ss_pred HH-CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH
Q 012800 104 LE-MGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPEL 182 (456)
Q Consensus 104 ~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 182 (456)
.. ...+.++.+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.+++.... .|..
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~ 343 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGA 343 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCc
Confidence 11 1224577778777777777899999999999988875 67777777888888899999999999888775 4566
Q ss_pred HHHH
Q 012800 183 VTYN 186 (456)
Q Consensus 183 ~~~~ 186 (456)
.+|.
T Consensus 344 ~t~~ 347 (372)
T 3ly7_A 344 NTLY 347 (372)
T ss_dssp HHHH
T ss_pred ChHH
Confidence 6654
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.67 E-value=7.6e-05 Score=50.96 Aligned_cols=52 Identities=19% Similarity=0.172 Sum_probs=26.3
Q ss_pred HHHhCCCHHHHHHHHHHhccC---Chh-hHHHHHHHHHccCChhHHHHHHHHHHHc
Q 012800 366 RLGKDGKIDHAINVFESMEVK---DSF-TYSSMVHNLCKAKRLPSASKLLLSCLKS 417 (456)
Q Consensus 366 ~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 417 (456)
.+.+.|++++|.+.|+++... +.. .+..++.++...|++++|++.|+++++.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344445555555555544333 333 4455555555555555555555555544
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.52 E-value=0.00075 Score=45.11 Aligned_cols=69 Identities=6% Similarity=0.126 Sum_probs=56.4
Q ss_pred CCCchHHHHHHHHHHHhhCc---HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 012800 3 GKLSTRLLNICVCTFCKANR---LEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAG 72 (456)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 72 (456)
.|.|+..+..+..++...++ .++|..+++++++.++. ++.....+...+.+.|++++|+..|+.+.+..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 46788888888888865555 68899999998888754 77788888888888999999999999888764
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.46 E-value=0.00032 Score=62.20 Aligned_cols=82 Identities=7% Similarity=-0.095 Sum_probs=50.7
Q ss_pred cCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHhccC-----------ChhhHHHHHH
Q 012800 335 AGNIKGARLHLEYMNKI---GFDS----NLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----------DSFTYSSMVH 396 (456)
Q Consensus 335 ~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~l~~ 396 (456)
.|++++|+.++++.++. -+.| ...+++.++.+|...|++++|..+++++... ...+++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666777666665432 1111 1345666667777777777777777665443 2345667777
Q ss_pred HHHccCChhHHHHHHHHHHH
Q 012800 397 NLCKAKRLPSASKLLLSCLK 416 (456)
Q Consensus 397 ~~~~~~~~~~A~~~~~~~~~ 416 (456)
.|...|++++|+.+++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77777777777777777653
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.44 E-value=0.0011 Score=44.32 Aligned_cols=66 Identities=14% Similarity=0.001 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHHHhCCC---HHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 012800 354 DSNLEAYNCIVDRLGKDGK---IDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 419 (456)
Q Consensus 354 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 419 (456)
+.+...+..+..++...++ .++|..+++++... ++..+..++..+.+.|++++|+..|+++++..+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5677888888887765554 68899999888766 667778888888999999999999999987743
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.38 E-value=0.0009 Score=59.41 Aligned_cols=86 Identities=12% Similarity=0.013 Sum_probs=55.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC---CCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHhccC-----------ChhhHH
Q 012800 331 GLCKAGNIKGARLHLEYMNKIG---FDSN----LEAYNCIVDRLGKDGKIDHAINVFESMEVK-----------DSFTYS 392 (456)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~ 392 (456)
.+...|++++|+.++++.++.. +.|+ ..+++.++.+|...|++++|+.+++++... ...+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3455667777777777665431 1121 445666677777777777777777765543 234567
Q ss_pred HHHHHHHccCChhHHHHHHHHHHH
Q 012800 393 SMVHNLCKAKRLPSASKLLLSCLK 416 (456)
Q Consensus 393 ~l~~~~~~~~~~~~A~~~~~~~~~ 416 (456)
.|+..|...|++++|+.+++++++
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 777788888888888887777753
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.38 E-value=0.00073 Score=45.89 Aligned_cols=62 Identities=15% Similarity=0.043 Sum_probs=54.0
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCHH-hHHHHHHHHHccCChHHHHHHHHHHHhcccC
Q 012800 393 SMVHNLCKAKRLPSASKLLLSCLKSGVRILKS-AQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 455 (456)
Q Consensus 393 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 455 (456)
..+..+...|++++|++.++++++..+. +.. .+..++.++...|++++|...|++..+.++.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4567788999999999999999988543 667 8899999999999999999999999887664
No 217
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.38 E-value=3.5e-06 Score=72.89 Aligned_cols=245 Identities=11% Similarity=0.034 Sum_probs=153.0
Q ss_pred chHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 012800 6 STRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIA 85 (456)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (456)
.+.+|+.|..+....|+..+|++-|-++ .|+..|..++.+..+.|.+++-+..+...++..- ++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 4567888888999888888888766432 3566788899999999999999988887766533 3344457888
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC--------------------CCC
Q 012800 86 GATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGD--------------------LTP 145 (456)
Q Consensus 86 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~ 145 (456)
+|++.++..+..+++. .||..-...+.+-|...|.++.|.-+|..+.... -..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8999988776554431 2566566677777778887777777665542110 123
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 012800 146 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 225 (456)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 225 (456)
++.+|-.+..+|...+.+.-|.-.--.+.-. |+ -...++..|-..|.+++.+.+++.-... -......|+-|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHH
Confidence 5678888888888888877766554333322 11 1223455667777777777777766532 1235566666666
Q ss_pred HHHhcCchhHHHHHHHHHHHc-CCCc------ChhhHHHHHHHHHHcCChHHHH
Q 012800 226 CCFRNRKYKLGLEILSAMKRK-GYTF------DGFGYCTVIAAFVKIGRLKEAT 272 (456)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~a~ 272 (456)
.|++- ++++..+.++....+ +++. ....|.-+.-.|..-.+++.|.
T Consensus 272 LYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 272 LYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 65543 445444444332221 2111 2334555566666666666544
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.35 E-value=0.038 Score=53.99 Aligned_cols=187 Identities=17% Similarity=0.135 Sum_probs=109.9
Q ss_pred HHHcCCHHHHHH-HHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHH
Q 012800 192 LCKAGRLRTARW-ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 270 (456)
Q Consensus 192 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (456)
....+++++|.+ ++..+ ++......++..+.+.|.++.|.++.+. . ..-.......|+++.
T Consensus 609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHH
Confidence 345677777765 44211 1122235566666777777777765421 1 111234456788888
Q ss_pred HHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012800 271 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 350 (456)
Q Consensus 271 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 350 (456)
|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+...++.+....
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 88875433 3677888888889999999999888887743 23444445556777766666655555
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH----HhH
Q 012800 351 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK----SAQ 426 (456)
Q Consensus 351 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~ 426 (456)
.| + +.....+|.+.|++++|++++. +.+++++|..+-++. + |.. ...
T Consensus 736 ~~---~---~~~A~~~~~~~g~~~~a~~~~~------------------~~~~~~~A~~lA~~~---~--~~~~~i~~~~ 786 (814)
T 3mkq_A 736 TG---K---FNLAFNAYWIAGDIQGAKDLLI------------------KSQRFSEAAFLGSTY---G--LGDNEVNDIV 786 (814)
T ss_dssp TT---C---HHHHHHHHHHHTCHHHHHHHHH------------------HTTCHHHHHHHHHHT---T--CCHHHHHHHH
T ss_pred cC---c---hHHHHHHHHHcCCHHHHHHHHH------------------HcCChHHHHHHHHHh---C--CChHHHHHHH
Confidence 43 1 2333345666777777777654 446666666655543 2 233 344
Q ss_pred HHHHHHHHccCChH
Q 012800 427 KAVVDGLRHSGCRR 440 (456)
Q Consensus 427 ~~l~~~~~~~g~~~ 440 (456)
......+...|+.+
T Consensus 787 ~~~~~~L~~~~~~~ 800 (814)
T 3mkq_A 787 TKWKENLILNGKNT 800 (814)
T ss_dssp HHHHHHHHTTTCHH
T ss_pred HHHHHHHHhccchh
Confidence 44444555566543
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.35 E-value=0.00064 Score=60.26 Aligned_cols=83 Identities=11% Similarity=-0.075 Sum_probs=67.2
Q ss_pred hCCCHHHHHHHHHHhccC-----------ChhhHHHHHHHHHccCChhHHHHHHHHHHHc-----CCC-C-CHHhHHHHH
Q 012800 369 KDGKIDHAINVFESMEVK-----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS-----GVR-I-LKSAQKAVV 430 (456)
Q Consensus 369 ~~g~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~l~ 430 (456)
..|++++|..++++.... ...+++.++.+|...|++++|+.+++++++. |.. | ...+++.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999999876553 2357889999999999999999999998643 321 2 235788899
Q ss_pred HHHHccCChHHHHHHHHHHHh
Q 012800 431 DGLRHSGCRREAKKIQSKIRM 451 (456)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~~~~ 451 (456)
..|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998865
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.29 E-value=0.0019 Score=57.34 Aligned_cols=88 Identities=10% Similarity=-0.066 Sum_probs=70.8
Q ss_pred HHHHHhCCCHHHHHHHHHHhccC-----------ChhhHHHHHHHHHccCChhHHHHHHHHHHHc-----CCC-C-CHHh
Q 012800 364 VDRLGKDGKIDHAINVFESMEVK-----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS-----GVR-I-LKSA 425 (456)
Q Consensus 364 ~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~-~-~~~~ 425 (456)
+..+.+.|++++|+.+++++... ...+++.++.+|...|++++|+.+++++++. |.. | ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566789999999999987654 2457888999999999999999999998643 221 1 2356
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHh
Q 012800 426 QKAVVDGLRHSGCRREAKKIQSKIRM 451 (456)
Q Consensus 426 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 451 (456)
+..++..|..+|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77899999999999999999998765
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.27 E-value=0.0012 Score=48.13 Aligned_cols=82 Identities=12% Similarity=0.015 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHhccCC-----hhhHHHHHHHHHccCChhHHH
Q 012800 337 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG---KIDHAINVFESMEVKD-----SFTYSSMVHNLCKAKRLPSAS 408 (456)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~ 408 (456)
....+.+-|......+ +++..+.-.+..++++.+ ++++++.+++.....+ ...+..+.-++.+.|++++|.
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 3456677777766665 578888888888888888 5668888888776654 356777888889999999999
Q ss_pred HHHHHHHHcCC
Q 012800 409 KLLLSCLKSGV 419 (456)
Q Consensus 409 ~~~~~~~~~~~ 419 (456)
+.++++++..+
T Consensus 92 ~y~~~lL~ieP 102 (152)
T 1pc2_A 92 KYVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHhcCC
Confidence 99999987743
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.26 E-value=0.0018 Score=44.47 Aligned_cols=63 Identities=11% Similarity=-0.058 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHhccC----------ChhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 012800 356 NLEAYNCIVDRLGKDGKIDHAINVFESMEVK----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 356 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 418 (456)
+..-...++..+.+.|++..|...|+.+... ....+..++.++.+.|++++|...++++++..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 4555667778888888888888888876543 34567778888888888888888888887664
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.21 E-value=0.045 Score=44.73 Aligned_cols=103 Identities=14% Similarity=0.130 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhC-----CCHHHHHHHHHHhccC----ChhhHHHHHHHHHc-cCChh
Q 012800 339 KGARLHLEYMNKIGFDSN---LEAYNCIVDRLGKD-----GKIDHAINVFESMEVK----DSFTYSSMVHNLCK-AKRLP 405 (456)
Q Consensus 339 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~-~~~~~ 405 (456)
..|...++++++. .|+ ...+..++..|... |+.++|.+.|+++... +..++......+++ .|+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 5667777777765 455 45777788888774 8888888888887765 35667777777777 48888
Q ss_pred HHHHHHHHHHHcCCC--CCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 012800 406 SASKLLLSCLKSGVR--ILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 451 (456)
Q Consensus 406 ~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 451 (456)
+|.+.+++++...+. |+....+. +..++|+.++.++..
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~--------~~q~eA~~LL~~~~d 297 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVI--------LSQKRARWLKAHVQD 297 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHH--------HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHH--------HHHHHHHHHHHHhHH
Confidence 888888888877655 54333332 233566666665543
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.15 E-value=0.0076 Score=43.26 Aligned_cols=106 Identities=12% Similarity=-0.049 Sum_probs=55.6
Q ss_pred CCCCchHHHHHHHHHHHhhCcH------HHHHHHHHHHHhcCCCCCHH-hHHHHHHHH------HccCChhHHHHHHHHH
Q 012800 2 FGKLSTRLLNICVCTFCKANRL------EKAEAIIIDGIRLGVLPDVV-TYNMLIDAY------CQFVSFDAGYTILNRM 68 (456)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~------~~~~~~~~a~~~~~~~ 68 (456)
..|.|+.+|-..+..+-+.|++ ++.+++|+++...- +|+.. .|..-+..+ ...++.++|.++|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~-Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL-PPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS-CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC-CccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4567777777777777777777 77777777777653 33321 111111111 1224555555555555
Q ss_pred HhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCC
Q 012800 69 REAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIP 109 (456)
Q Consensus 69 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 109 (456)
.+.+ +-=...|....+.=.++|++..|.+++...+..+..
T Consensus 87 ~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 87 RANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 4431 111444444444445555555555555555554433
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.93 E-value=0.011 Score=40.47 Aligned_cols=67 Identities=13% Similarity=0.023 Sum_probs=47.8
Q ss_pred CchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcC------CCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 012800 5 LSTRLLNICVCTFCKANRLEKAEAIIIDGIRLG------VLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREA 71 (456)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 71 (456)
.++..+-.+...+.+.|++..|...|+.+.+.. ..+....+..+..++.+.|+++.|+..++++.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 456667777888888888888888888877642 1234556777777777777777777777777665
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.70 E-value=0.12 Score=50.53 Aligned_cols=154 Identities=13% Similarity=0.099 Sum_probs=89.3
Q ss_pred HHHHhhCcHHHHHH-HHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCCh
Q 012800 15 CTFCKANRLEKAEA-IIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLL 93 (456)
Q Consensus 15 ~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 93 (456)
......+++++|.+ ++.. + ++......++..+.+.|..+.|.++.+. .. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCH
Confidence 34456778888766 4421 1 1122336677777778888877765521 11 112334567888
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 012800 94 SCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGL 173 (456)
Q Consensus 94 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 173 (456)
+.|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++.+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 8887775432 3667788888888888888888888877642 334444455566666655555554
Q ss_pred HhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012800 174 QKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 207 (456)
Q Consensus 174 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 207 (456)
...|. ++....+|.+.|++++|.+++..
T Consensus 734 ~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 734 ETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 44421 22233344555666666555443
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.55 E-value=0.036 Score=40.40 Aligned_cols=79 Identities=10% Similarity=0.046 Sum_probs=36.9
Q ss_pred HHHHHHHHHHCCCccCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCc--CHHhHHHHHHHHHhcCCHHHHHHHH
Q 012800 271 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEG---KLEAAYLLLDEMEKQGFEC--DKYTHTILIDGLCKAGNIKGARLHL 345 (456)
Q Consensus 271 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~ 345 (456)
+++.|......+. ++..+...+..++++.+ +.++++.+|+...+.. .| ....+-.+.-++.+.|++++|.+++
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3344444433332 34444444555555544 3345555555555432 12 2333444444555555555555555
Q ss_pred HHHHhC
Q 012800 346 EYMNKI 351 (456)
Q Consensus 346 ~~~~~~ 351 (456)
+.+++.
T Consensus 95 ~~lL~i 100 (152)
T 1pc2_A 95 RGLLQT 100 (152)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 555553
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.092 Score=39.33 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=10.9
Q ss_pred HhHHHHHHHHHHcCCChhHHHHHHHH
Q 012800 77 VVTYNSLIAGATRNSLLSCSLDLLDE 102 (456)
Q Consensus 77 ~~~~~~l~~~~~~~~~~~~a~~~~~~ 102 (456)
...|..|.......|+++-|.+.|..
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 33444444444444444444444433
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.54 E-value=0.13 Score=37.08 Aligned_cols=111 Identities=12% Similarity=0.080 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHhcCch------hHHHHHHHHHHHcCCCcChh-hHHHHHH------HHHHcCChHHHHHHHHHHHHCC
Q 012800 216 NAITYTTIMKCCFRNRKY------KLGLEILSAMKRKGYTFDGF-GYCTVIA------AFVKIGRLKEATDYMEQMVTDG 282 (456)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~ 282 (456)
|..+|-..+....+.|++ +...++|++....- ||+.. .+...+. .+...++.++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~-Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL-PPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS-CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC-CccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455555555555555555 56666666666542 44321 1111111 1123356666777776665542
Q ss_pred CccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHH
Q 012800 283 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 329 (456)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 329 (456)
-.. ...|....+--.++|+..+|.+++......+.. +...+...+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~ 135 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIAL 135 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHH
Confidence 222 555555555555667777777777666665544 333333333
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.50 E-value=0.032 Score=45.58 Aligned_cols=88 Identities=11% Similarity=0.013 Sum_probs=57.5
Q ss_pred cHHHHHHHHHHHHhcCCCC-CHHhHHHHHHHHHc-----cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcC-CChh
Q 012800 22 RLEKAEAIIIDGIRLGVLP-DVVTYNMLIDAYCQ-----FVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRN-SLLS 94 (456)
Q Consensus 22 ~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~ 94 (456)
....|...++++++.++.- +...|..+...|.+ -|+.++|.+.|++..+.+..-+..++......+++. |+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4567777777777765321 24467777777776 377777777777777764222366666667777664 7777
Q ss_pred HHHHHHHHHHHCCCC
Q 012800 95 CSLDLLDEMLEMGIP 109 (456)
Q Consensus 95 ~a~~~~~~~~~~~~~ 109 (456)
.+.+.+++.......
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 777777777775443
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.48 E-value=0.014 Score=40.89 Aligned_cols=90 Identities=12% Similarity=0.025 Sum_probs=64.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH---HHHHHHHhccCC-h----hhHHHHHHHHHc
Q 012800 329 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH---AINVFESMEVKD-S----FTYSSMVHNLCK 400 (456)
Q Consensus 329 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-~----~~~~~l~~~~~~ 400 (456)
+..-........+..-+......| .++..+--.+..++.+..+..+ ++.+++.....+ + .....+.-++.+
T Consensus 8 l~~~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 8 LNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 333344445566667777666655 4777777778888888887666 888888776653 2 345667788889
Q ss_pred cCChhHHHHHHHHHHHcCC
Q 012800 401 AKRLPSASKLLLSCLKSGV 419 (456)
Q Consensus 401 ~~~~~~A~~~~~~~~~~~~ 419 (456)
.|++++|.+.++.+++..+
T Consensus 87 lg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCT
T ss_pred hhhHHHHHHHHHHHHHhCC
Confidence 9999999999998887743
No 232
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.38 E-value=0.81 Score=44.47 Aligned_cols=21 Identities=10% Similarity=-0.168 Sum_probs=10.8
Q ss_pred HHHHHhhCcHHHHHHHHHHHH
Q 012800 14 VCTFCKANRLEKAEAIIIDGI 34 (456)
Q Consensus 14 ~~~~~~~g~~~~A~~~~~~~~ 34 (456)
++.+.+.++.+.+.++|..+.
T Consensus 237 ~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 237 NKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 334444455555555555554
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.07 E-value=0.22 Score=35.05 Aligned_cols=146 Identities=14% Similarity=0.108 Sum_probs=85.1
Q ss_pred HHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012800 290 YNTLINL--YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 367 (456)
Q Consensus 290 ~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 367 (456)
...|+.+ ..-.|..++..++..+.... .+..-++.++--....-+-+-..++++.+-+. .| .
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------i 71 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------L 71 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------G
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------c
Confidence 3444443 34467778888887777764 24555666665555555555555555554332 11 1
Q ss_pred HhCCCHHHHHHHHHHhccCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHH
Q 012800 368 GKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 447 (456)
Q Consensus 368 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 447 (456)
..+|++......+-.+.. +.......+..+..+|.-++-.+++...+. +.+|++..+..+..||.+.|+..+|.+++.
T Consensus 72 s~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 72 DKCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp GGCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 223333333333332222 334445556667777777777777777543 346677788888888888888888888777
Q ss_pred HHHhcc
Q 012800 448 KIRMAK 453 (456)
Q Consensus 448 ~~~~~~ 453 (456)
+.=+.+
T Consensus 150 ~AC~kG 155 (172)
T 1wy6_A 150 EACKKG 155 (172)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 765544
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.32 Score=36.45 Aligned_cols=100 Identities=12% Similarity=0.118 Sum_probs=49.4
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHH
Q 012800 157 LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 236 (456)
Q Consensus 157 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 236 (456)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34455666665555544 1445566666666666666666666555432 23333344445555444
Q ss_pred HHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHH
Q 012800 237 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQ 277 (456)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 277 (456)
.++-+.....+ -++....++.-.|+++++.+++.+
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44433333332 123333344455666666665543
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.92 E-value=0.22 Score=34.88 Aligned_cols=85 Identities=11% Similarity=-0.038 Sum_probs=51.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhCCCHH
Q 012800 300 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG---ARLHLEYMNKIGFDS--NLEAYNCIVDRLGKDGKID 374 (456)
Q Consensus 300 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 374 (456)
......+.+-+......|. ++..+-..+..++.+..+... ++.+++.+.+.+ .| .......|.-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 3344455555555544443 566666667777777666554 677777766653 22 3344555666777777777
Q ss_pred HHHHHHHHhccC
Q 012800 375 HAINVFESMEVK 386 (456)
Q Consensus 375 ~a~~~~~~~~~~ 386 (456)
+|.+.++.+.+.
T Consensus 92 ~A~~~~~~lL~~ 103 (126)
T 1nzn_A 92 KALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 777777766655
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.82 E-value=9.6e-06 Score=70.29 Aligned_cols=261 Identities=13% Similarity=0.131 Sum_probs=156.9
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 012800 111 DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIK 190 (456)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 190 (456)
.+.+|..|..+....+.+.+|++.|-+ ..|+..|..++....+.|.+++-+.++....+..- ++..=+.|+.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 344566777777777777777665422 23455677777777788888888877776665532 3333356777
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHH
Q 012800 191 GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 270 (456)
Q Consensus 191 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (456)
+|++.++..+..+++ ..|+..-...+.+-|...|.++.|.-+|..+.. |..+..++.+.|++..
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence 777777765543332 135555566677777777777777666554332 2233334455565555
Q ss_pred HHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012800 271 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 350 (456)
Q Consensus 271 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 350 (456)
|.+.-++ ..++.+|..+..+|...+++.-|...--.++- .......++..|...|.+++.+.+++....
T Consensus 189 AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 5443222 23566777777788877777666544433332 112234455566777777777777777664
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC-----------ChhhHHHHHHHHHccCChhHHH
Q 012800 351 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----------DSFTYSSMVHNLCKAKRLPSAS 408 (456)
Q Consensus 351 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~ 408 (456)
.. .....+|+.|.-.|++- ++++..+.++..-.. ....|..++-.|.+-.+++.|.
T Consensus 258 lE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 258 LE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp ST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 42 45667777777777664 344444444432221 4566777777777777777655
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.39 E-value=2.2 Score=41.58 Aligned_cols=150 Identities=13% Similarity=0.033 Sum_probs=72.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhCCC
Q 012800 297 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID--GLCKAGNIKGARLHLEYMNKIGFDSNLEAY--NCIVDRLGKDGK 372 (456)
Q Consensus 297 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~ 372 (456)
+.-.|+.+....++..+.+.. +..+...++. ++...|+.+.+..+.+.+.... .|....- ..+..+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 445566666666666655431 2233333333 3345677777777777766531 2222211 233445666777
Q ss_pred HHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCCh-HHHHHHHHH
Q 012800 373 IDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR-REAKKIQSK 448 (456)
Q Consensus 373 ~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 448 (456)
.....+++..+... +......+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|+. .+|...+.+
T Consensus 576 ~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 576 NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 76666677766544 22222222333344566665666665544332 22222222222233333332 556666666
Q ss_pred HHh
Q 012800 449 IRM 451 (456)
Q Consensus 449 ~~~ 451 (456)
+..
T Consensus 655 L~~ 657 (963)
T 4ady_A 655 LTK 657 (963)
T ss_dssp HHT
T ss_pred Hcc
Confidence 643
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.34 E-value=0.46 Score=33.48 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 012800 255 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 318 (456)
Q Consensus 255 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 318 (456)
+...+..+...|.-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 334444555555555555555554332 344555555555566666666666666665555554
No 239
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.19 E-value=2 Score=39.97 Aligned_cols=113 Identities=9% Similarity=-0.047 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHhHHH----HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 012800 301 GKLEAAYLLLDEMEKQGFECDKYTHTI----LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 376 (456)
Q Consensus 301 ~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 376 (456)
.+.+.|...+....+.. ..+...... ++......+...++...+...... ..+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 47899999998886543 223333222 222233344345666666665543 34444444555555678999999
Q ss_pred HHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 012800 377 INVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLK 416 (456)
Q Consensus 377 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 416 (456)
.+.|..+... ......-+.+++...|+.++|..+|+++..
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999988765 344455577788889999999999999863
No 240
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.06 E-value=0.4 Score=35.28 Aligned_cols=42 Identities=7% Similarity=0.049 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHhccC--ChhhHHHHHHH
Q 012800 356 NLEAYNCIVDRLGKDGKIDHAINVFESMEVK--DSFTYSSMVHN 397 (456)
Q Consensus 356 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~ 397 (456)
+.+.-..+..+|.+.|++++|+.+++.+..+ ++.+-..|++.
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakL 164 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANL 164 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHH
Confidence 3344455666777777777777777776544 55544444443
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.77 E-value=0.28 Score=35.00 Aligned_cols=65 Identities=6% Similarity=0.027 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHHhCCCHH---HHHHHHHHhccC----ChhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 012800 354 DSNLEAYNCIVDRLGKDGKID---HAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 354 ~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 418 (456)
.|+..+--.+..++.+..+.+ +++.+++..... .......+.-++.+.|++++|.+..+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 567777777778888877644 567777766544 33456667788889999999999998888764
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.62 E-value=0.37 Score=45.74 Aligned_cols=49 Identities=6% Similarity=-0.143 Sum_probs=32.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 012800 321 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 371 (456)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 371 (456)
+..-|..|.....+.+.+++|.+.|+..+.. .-+...+..|+..|.+.+
T Consensus 612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 612 SGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcC
Confidence 4445666766667777777777777776654 456667777777776655
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.56 E-value=2.4 Score=37.76 Aligned_cols=240 Identities=15% Similarity=0.047 Sum_probs=136.8
Q ss_pred cCCHHHHHHHHHHHhh-----CCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHH----HHc
Q 012800 195 AGRLRTARWILKELGD-----SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF----VKI 265 (456)
Q Consensus 195 ~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 265 (456)
.|+++.|.+.+..+.+ .+..........++..|...++++...+.+..+.+.... .......+++.+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC
Confidence 3678888887766553 233445677788899999999999988887776654312 222333333322 223
Q ss_pred CChHHHHH--HHHHHHH---CCCcc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCcC---HHhHHHHHHHH
Q 012800 266 GRLKEATD--YMEQMVT---DGVQL---DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ--GFECD---KYTHTILIDGL 332 (456)
Q Consensus 266 ~~~~~a~~--~~~~~~~---~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~ 332 (456)
...+.... +.+.+.. ..+.. .......|...|...|++.+|..++..+... +.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 33332111 1111111 01112 1233456788899999999999999998642 22211 23566677889
Q ss_pred HhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHhccC-----ChhhHH----HHHHH
Q 012800 333 CKAGNIKGARLHLEYMNKI----GFDSN--LEAYNCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYS----SMVHN 397 (456)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~----~l~~~ 397 (456)
...+++..|..++.++... ..+|+ ...+...+..+...+++.+|.+.|.++... ++..+. .++..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~ 267 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF 267 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 9999999999999887432 11222 234566667778889999988888766543 332222 22222
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 012800 398 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 435 (456)
Q Consensus 398 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 435 (456)
..-.+....-..++.+......-++...+..++.++..
T Consensus 268 ~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~ 305 (445)
T 4b4t_P 268 LVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTT 305 (445)
T ss_dssp HHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHh
Confidence 22333333333333333333222334455666666654
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.46 E-value=0.22 Score=35.07 Aligned_cols=65 Identities=6% Similarity=0.014 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHHhCCCH---HHHHHHHHHhccC----ChhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 012800 354 DSNLEAYNCIVDRLGKDGKI---DHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 354 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 418 (456)
.|+..+--.+..++.+..+. .+++.+++..... ....+..+.-++.+.|++++|.+..+.+++..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 56777777777788877764 3567777766544 34556677888889999999999998888663
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.18 E-value=0.58 Score=40.84 Aligned_cols=114 Identities=15% Similarity=0.080 Sum_probs=70.9
Q ss_pred cCHHhHHHHHHHH---HhcCCHHHHHHHHHHHHhC--CC-CCCH------------------HHHHHHHHHHHhCCCHHH
Q 012800 320 CDKYTHTILIDGL---CKAGNIKGARLHLEYMNKI--GF-DSNL------------------EAYNCIVDRLGKDGKIDH 375 (456)
Q Consensus 320 ~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~--~~-~~~~------------------~~~~~l~~~~~~~g~~~~ 375 (456)
.|...|..++... ...|+.+.+...++.+... |- -++. .....++..+...|++++
T Consensus 110 ~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~ 189 (388)
T 2ff4_A 110 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA 189 (388)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3555666666543 3458899999999998764 21 1110 012233445566777777
Q ss_pred HHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHH-----cCCCCCHHhHHHHHHHH
Q 012800 376 AINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLK-----SGVRILKSAQKAVVDGL 433 (456)
Q Consensus 376 a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~~~ 433 (456)
|...+..+... +...|..++.++.+.|+..+|++.|+++.+ .|+.|.+.+-...-..+
T Consensus 190 a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~il 255 (388)
T 2ff4_A 190 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERIL 255 (388)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 77777666544 556777777777777777777777777643 37777776665444333
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.12 E-value=0.95 Score=39.49 Aligned_cols=68 Identities=15% Similarity=0.015 Sum_probs=35.2
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHH-----CCCCCCHHh
Q 012800 46 NMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLE-----MGIPPDVWS 114 (456)
Q Consensus 46 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 114 (456)
..++..+...|+++++...+..+.... +-+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 344455555555555555555554432 33445555555555555555555555555433 255555544
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.02 E-value=0.56 Score=34.54 Aligned_cols=115 Identities=12% Similarity=0.057 Sum_probs=60.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHHhccC------Chh
Q 012800 324 THTILIDGLCKAGNIKGARLHLEYMNKIG-FDSN-------LEAYNCIVDRLGKDGKIDHAINVFESMEVK------DSF 389 (456)
Q Consensus 324 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~ 389 (456)
++..-++.+...|.++.|+-+...+.... ..|+ ..++..+.+++...|++..|...|+++... +..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44455666777788888877777754331 1222 235566677777778888887777765432 111
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 012800 390 TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 451 (456)
Q Consensus 390 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 451 (456)
....+. -...... .....++...-..+..+|.+.|++++|+..++.+..
T Consensus 102 ~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 102 VRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 100000 0000000 001122333444577788888888888888777643
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.84 E-value=0.8 Score=43.53 Aligned_cols=53 Identities=15% Similarity=0.081 Sum_probs=38.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhc
Q 012800 331 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 384 (456)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 384 (456)
-|...|+++-|+.+-++..... |.+..+|..|..+|...|+++.|+-.++.+.
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3556777777777777777652 5557777777778888888887777777664
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.23 E-value=5 Score=40.86 Aligned_cols=186 Identities=13% Similarity=0.118 Sum_probs=92.3
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----C----------------
Q 012800 223 IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD----G---------------- 282 (456)
Q Consensus 223 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~---------------- 282 (456)
++..+...+..+.+.++.... +.++...-.+..++...|++++|...|++.... .
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444455555555554433221 222333334455566666666666666543210 0
Q ss_pred --CccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 012800 283 --VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD----KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 356 (456)
Q Consensus 283 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 356 (456)
...-..-|..++..+.+.+.++.+.++-....+....-+ ...|..+...+...|++++|...+-.+..... -
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--K 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--C
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--H
Confidence 000123355666677777777777766665554321111 12456666777777777777777766655432 2
Q ss_pred HHHHHHHHHHHHhCCC------------HHHHHHHHHHhcc-C----ChhhHHHHHHHH-HccCChhHHHH-HHHHHH
Q 012800 357 LEAYNCIVDRLGKDGK------------IDHAINVFESMEV-K----DSFTYSSMVHNL-CKAKRLPSASK-LLLSCL 415 (456)
Q Consensus 357 ~~~~~~l~~~~~~~g~------------~~~a~~~~~~~~~-~----~~~~~~~l~~~~-~~~~~~~~A~~-~~~~~~ 415 (456)
...+..|+..++..|. .++..+++..-.. . +...|..++.++ ...|++.+|.. +|+++.
T Consensus 971 ~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 3445555555544443 3344444432111 1 222344444444 56677776554 455544
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.13 E-value=2.9 Score=42.55 Aligned_cols=132 Identities=15% Similarity=0.115 Sum_probs=76.5
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHH
Q 012800 112 VWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPC----TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNI 187 (456)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 187 (456)
..-|..++..+.+.+.++.+.+.-...++...+.+ ...|..+.+.+...|++++|...+-.+..... -......
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~ 976 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHH
Confidence 34567777888888888888877776655321111 12567778888888888888888877776533 3455666
Q ss_pred HHHHHHHcCCH------------HHHHHHHHHH-hhC-CCCCCHHHHHHHHHHHHhcCchhHHHH-HHHHHHH
Q 012800 188 LIKGLCKAGRL------------RTARWILKEL-GDS-GHAPNAITYTTIMKCCFRNRKYKLGLE-ILSAMKR 245 (456)
Q Consensus 188 l~~~~~~~~~~------------~~a~~~~~~~-~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~ 245 (456)
++...+..|.. ++..+++... .+. .+...+.-|..|=.-+..+|++..|-. +|+.+.+
T Consensus 977 LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 977 FVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 66666655543 4444444332 111 111122334444444456677765544 4555544
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.00 E-value=0.95 Score=29.90 Aligned_cols=60 Identities=12% Similarity=0.073 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHH
Q 012800 269 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 329 (456)
Q Consensus 269 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 329 (456)
-+..+-++.+...+..|++.+..+.+++|.+.+++..|.++++.++.+- .+...+|..++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 3455555555555566666666666666666666666666666655431 22233454444
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.48 E-value=1.2 Score=29.51 Aligned_cols=49 Identities=10% Similarity=-0.077 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhc
Q 012800 404 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 452 (456)
Q Consensus 404 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 452 (456)
.=+..+-+..+...++-|++.+..+.+.+|++.+++..|.++++-++.+
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3355555666666666677777777777777777777777777766543
No 253
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.75 E-value=6.8 Score=34.86 Aligned_cols=254 Identities=12% Similarity=0.085 Sum_probs=146.7
Q ss_pred cCChHHHHHHHHHHHhC-----CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH----hc
Q 012800 160 NRYTDNALRMFRGLQKH-----GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF----RN 230 (456)
Q Consensus 160 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 230 (456)
.|+++.|++.+-.+.+. ...........++..+...++++...+.+..+...... .......++..+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC
Confidence 36788888877666542 23445777888999999999999998888776653322 2333334443332 22
Q ss_pred CchhHH--HHHHHHHHHc--C-CCc---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCcc---CHHHHHHHHHHH
Q 012800 231 RKYKLG--LEILSAMKRK--G-YTF---DGFGYCTVIAAFVKIGRLKEATDYMEQMVTD--GVQL---DIVSYNTLINLY 297 (456)
Q Consensus 231 ~~~~~a--~~~~~~~~~~--~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~---~~~~~~~l~~~~ 297 (456)
...+.. ..+.+.+... | +-. .......+...+...|++.+|.+++..+... +... -...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 322221 1111111111 1 101 1123356788899999999999999998753 2221 134667778899
Q ss_pred HhcCCHHHHHHHHHHHHH----cCCCcC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHH----HHHHH
Q 012800 298 CKEGKLEAAYLLLDEMEK----QGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMNKI-GFDSNLEAYN----CIVDR 366 (456)
Q Consensus 298 ~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~ 366 (456)
...+++.+|..++..+.. ....|+ ...+...+..+...+++.+|-+.|.++... ....+...+. .++.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~ 267 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF 267 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 999999999999998742 222222 234566777788899999998888887543 1112222222 22222
Q ss_pred HHhCCCHHHHHHHHHHhcc----CChhhHHHHHHHHHcc--CChhHHHHHHHHH
Q 012800 367 LGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKA--KRLPSASKLLLSC 414 (456)
Q Consensus 367 ~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~ 414 (456)
..-.+....-..+...... .+...+..++.+|... .+++.+.+.|...
T Consensus 268 ~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 268 LVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred HHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence 2222222222222222211 1556777888887653 4556655555443
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.01 E-value=7.3 Score=33.82 Aligned_cols=167 Identities=10% Similarity=-0.028 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC-CCCC---CHHHHHHHHHHHHhcC-chhHHHHHHHHHHHcCCCcChhhH-
Q 012800 182 LVTYNILIKGLCKAGRLRTARWILKELGDS-GHAP---NAITYTTIMKCCFRNR-KYKLGLEILSAMKRKGYTFDGFGY- 255 (456)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~- 255 (456)
......|...|.+.|+.++..+++.....- +..+ .......++..+.... ..+.-.++..+..+.. .....+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 456677889999999999999988876531 1111 2334556677665543 2333333333333211 0111222
Q ss_pred -----HHHHHHHHHcCChHHHHHHHHHHHHC--CCc---cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCcCHH
Q 012800 256 -----CTVIAAFVKIGRLKEATDYMEQMVTD--GVQ---LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ--GFECDKY 323 (456)
Q Consensus 256 -----~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 323 (456)
..++..|...|++.+|.+++..+.+. ... .-..++..-++.|...+++.++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 25677788888888888888877764 111 12334555567788888888888888777542 1223333
Q ss_pred hHH----HHHHHHH-hcCCHHHHHHHHHHHH
Q 012800 324 THT----ILIDGLC-KAGNIKGARLHLEYMN 349 (456)
Q Consensus 324 ~~~----~l~~~~~-~~~~~~~a~~~~~~~~ 349 (456)
... .-...+. ..+++..|...|-+..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 222 1223345 6788888877777654
No 255
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.57 E-value=3.3 Score=29.16 Aligned_cols=69 Identities=14% Similarity=0.020 Sum_probs=36.4
Q ss_pred CccCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012800 283 VQLDIVSYNTLINLYCKEGKL---EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 351 (456)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (456)
..|++.+--.+..++.+..+. .+++.+++++.+.+..-....+-.+.-++.+.|+++.|.++.+.+++.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 344555544555555555433 345555655555432112334445555666666666666666666654
No 256
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.53 E-value=3.3 Score=29.15 Aligned_cols=61 Identities=11% Similarity=0.062 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHH
Q 012800 269 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 330 (456)
Q Consensus 269 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 330 (456)
-+..+-++.+...+..|++.+....+++|.+.+|+..|.++|+-++.+ ..+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 345555666666666777777777777777777777777777776654 2233445555543
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.38 E-value=5.1 Score=28.23 Aligned_cols=61 Identities=8% Similarity=0.033 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012800 304 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 365 (456)
Q Consensus 304 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 365 (456)
=+..+-++.+....+.|++......+++|.+.+|+..|.++++-++.+- .+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 3455666666666777777778888888888888888888877776552 333445555543
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.15 E-value=1.9 Score=34.72 Aligned_cols=114 Identities=11% Similarity=0.094 Sum_probs=71.0
Q ss_pred HHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC----HhHHHHHHHHHHc
Q 012800 14 VCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPD----VVTYNSLIAGATR 89 (456)
Q Consensus 14 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 89 (456)
+..+.+.|++++|++.....++..|. |...-..++..++-.|+++.|..-++...+.. |+ ...|..+|.+
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHH---
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHH---
Confidence 34567888999999999988888754 88888888888899999999988888777653 33 2344444443
Q ss_pred CCChhHHHHHHHHHHHCCCCC-----CHHhHHHHHHHH--HhcCChhHHHHHHHHHHh
Q 012800 90 NSLLSCSLDLLDEMLEMGIPP-----DVWSYNSLMHCL--FQLGKPDEANRVFQDMIC 140 (456)
Q Consensus 90 ~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~ 140 (456)
+..=.+...-+-.| ...-...++.+. ...|+.++|.++-..+.+
T Consensus 78 -------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 -------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp -------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 11111222221111 122233344443 345888888877777654
No 259
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=88.01 E-value=17 Score=33.88 Aligned_cols=310 Identities=9% Similarity=0.030 Sum_probs=161.3
Q ss_pred HHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCH-hHHHHHHHHHHcCCChhH
Q 012800 17 FCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDV-VTYNSLIAGATRNSLLSC 95 (456)
Q Consensus 17 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 95 (456)
..+.|++..+..+...+.. ++-..-..|..+...+ .....++. -..+.+..-.|-. ..-...+..+.+.+++..
T Consensus 16 a~~~~~~~~~~~l~~~l~~-~pL~~yl~y~~l~~~l-~~~~~~ev---~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~ 90 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKD-YPLYPYLEYRQITDDL-MNQPAVTV---TNFVRANPTLPPARTLQSRFVNELARREDWRG 90 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTT-STTHHHHHHHHHHHTG-GGCCHHHH---HHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHhhcC-CCcHHHHHHHHHHhCc-ccCCHHHH---HHHHHHCCCChhHHHHHHHHHHHHHhCCCHHH
Confidence 4556888877777665432 2211111333322222 11233433 3333333112222 223445566777888776
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHH--HHHHHHHH
Q 012800 96 SLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDN--ALRMFRGL 173 (456)
Q Consensus 96 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~ 173 (456)
....+.. .+.+...-.....+....|+..+|......+-..+ ...+.....++..+.+.|.... ...-++.+
T Consensus 91 ~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~a 164 (618)
T 1qsa_A 91 LLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLA 164 (618)
T ss_dssp HHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 6664432 23455555567777888899888888777776665 4455666777777776665433 33333333
Q ss_pred HhCCC-----------CCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHH---HHHHHHhcCchhHHHH
Q 012800 174 QKHGF-----------VPELV-TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT---IMKCCFRNRKYKLGLE 238 (456)
Q Consensus 174 ~~~~~-----------~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~ 238 (456)
...|- +++.. ....++..+.+... +..... . ..++...-.. .+.-. ...+.+.|..
T Consensus 165 l~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~---~~~~~~---~--~~~~~~~~~~~~~~~~rl-ar~d~~~A~~ 235 (618)
T 1qsa_A 165 MKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNT---VLTFAR---T--TGATDFTRQMAAVAFASV-ARQDAENARL 235 (618)
T ss_dssp HHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGG---HHHHHH---H--SCCCHHHHHHHHHHHHHH-HHHCHHHHHH
T ss_pred HHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHh---HHHHHh---c--cCCChhhHHHHHHHHHHH-HhcCHHHHHH
Confidence 33321 11111 11111111111111 111111 1 1222222111 12222 2347788999
Q ss_pred HHHHHHHcCCCcChhhHHHHHHH----HHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012800 239 ILSAMKRKGYTFDGFGYCTVIAA----FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 314 (456)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 314 (456)
.+....+.. ..+......+-.. ....+...++...+....... .+.....-.+....+.|+++.|...|..|.
T Consensus 236 ~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~ 312 (618)
T 1qsa_A 236 MIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLP 312 (618)
T ss_dssp HHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSC
T ss_pred HHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHcc
Confidence 888887553 3333333222222 223343556666776655542 333334444555567799999999998886
Q ss_pred HcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012800 315 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 350 (456)
Q Consensus 315 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 350 (456)
... .......-.+.+++...|+.++|..+|+.+..
T Consensus 313 ~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 313 MEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 532 12344556677788889999999999999875
No 260
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.53 E-value=13 Score=30.98 Aligned_cols=112 Identities=15% Similarity=0.125 Sum_probs=56.6
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHH----HHHHHHCCCCCCHHhHHHHH
Q 012800 44 TYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDL----LDEMLEMGIPPDVWSYNSLM 119 (456)
Q Consensus 44 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~ 119 (456)
.|.++..-|.+.+++++|++++..-. ..+.+.|+...|.++ ++-+.+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44455556666677777766654432 123445555554443 34444556666766666666
Q ss_pred HHHHhcCChh-HHHHHHHHHHh----CC--CCCChhHHHHHHHHHHhcCChHHHHHHH
Q 012800 120 HCLFQLGKPD-EANRVFQDMIC----GD--LTPCTATFNIMLNGLCKNRYTDNALRMF 170 (456)
Q Consensus 120 ~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 170 (456)
..+.....-+ .-.+++++++. .| ...++..+..+...|.+.+++.+|...|
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 6555533211 11222232221 11 1234455566666666666666665554
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.73 E-value=5.8 Score=35.10 Aligned_cols=98 Identities=11% Similarity=-0.033 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHH--H
Q 012800 288 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGF--ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI---GFDSNLEA--Y 360 (456)
Q Consensus 288 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 360 (456)
.+...+...|.+.|+++.|.+.+.++..... .--...+...++.+...+++..+...+.++... +-.|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3567788999999999999999999986422 223456778888899999999999999887543 22222211 1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhcc
Q 012800 361 NCIVDRLGKDGKIDHAINVFESMEV 385 (456)
Q Consensus 361 ~~l~~~~~~~g~~~~a~~~~~~~~~ 385 (456)
..-+..+...+++..|.+.|-++..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1112234567788888877766543
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.69 E-value=15 Score=30.72 Aligned_cols=45 Identities=13% Similarity=0.037 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHhccCChhhHHHHHHHHHc
Q 012800 356 NLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCK 400 (456)
Q Consensus 356 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 400 (456)
++.....+...|.+.|++.+|...|-.....++..+..++.-+..
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 566677777777777887777777653322244444444443333
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.02 E-value=4.2 Score=32.82 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=26.7
Q ss_pred HhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012800 228 FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT 280 (456)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 280 (456)
.+.|+++.++.....-++.. |.|...-..+++.+|-.|++++|.+-++...+
T Consensus 8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455555555555444443 44444455555555555555555555555444
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.85 E-value=19 Score=31.29 Aligned_cols=294 Identities=9% Similarity=0.007 Sum_probs=164.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCC---cHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhCCCCCCHHH--
Q 012800 147 TATFNIMLNGLCKNRYTDNALRMFRGLQKH-GFVP---ELVTYNILIKGLCKA-GRLRTARWILKELGDSGHAPNAIT-- 219 (456)
Q Consensus 147 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~-- 219 (456)
......+...|.+.|+.++..+++...... +..| .......++..+... +..+.-.++.....+.... ...+
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 456677889999999999999999876542 1112 233456677777664 3344444444443321110 1122
Q ss_pred ----HHHHHHHHHhcCchhHHHHHHHHHHHcCCCcC-----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCccCHH
Q 012800 220 ----YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD-----GFGYCTVIAAFVKIGRLKEATDYMEQMVTD--GVQLDIV 288 (456)
Q Consensus 220 ----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 288 (456)
-..++..|...|++.+|.+++..+.+.-...| ...+..-++.|...+++.++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 23678899999999999999998886521222 233555677788999999999999887653 2223443
Q ss_pred HHHHH----HHHHH-hcCCHHHHHHHHHHHHHcCCCcCH----HhHHHHHHHHHhcCCHHHHHHHHH-HH-HhCCCCCCH
Q 012800 289 SYNTL----INLYC-KEGKLEAAYLLLDEMEKQGFECDK----YTHTILIDGLCKAGNIKGARLHLE-YM-NKIGFDSNL 357 (456)
Q Consensus 289 ~~~~l----~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~-~~-~~~~~~~~~ 357 (456)
....+ ...+. ..+++..|...|-+..+.--.... .....++-+..-.++..+...++. .. ... ..|..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~-~~pei 256 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITY-SGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTT-CSHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhcccccccc-CCccH
Confidence 33222 33456 789999999888776431001111 111112222223344444433332 21 222 24555
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 012800 358 EAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 434 (456)
Q Consensus 358 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 434 (456)
..+..++.++ ..+++.+..++++..... |+.....+-..+.+ --...+.+.. .+-...++..+...+.
T Consensus 257 ~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~-----Ir~~~L~~i~---~pYsrIsl~~iA~~l~ 327 (394)
T 3txn_A 257 DAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDT-----MLEQNLCRII---EPYSRVQVAHVAESIQ 327 (394)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHH-----HHHHHHHHHH---TTCSEEEHHHHHHHHT
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH-----HHHHHHHHHh---HhhceeeHHHHHHHHC
Confidence 5566666654 667887777777765433 44322111111100 0011122222 1224567777776664
Q ss_pred ccCChHHHHHHHHHHHhcc
Q 012800 435 HSGCRREAKKIQSKIRMAK 453 (456)
Q Consensus 435 ~~g~~~~A~~~~~~~~~~~ 453 (456)
- ..+++...+.+|...+
T Consensus 328 l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 328 L--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp C--CHHHHHHHHHHHHHTT
T ss_pred c--CHHHHHHHHHHHHHCC
Confidence 3 6788999888887765
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.87 E-value=16 Score=32.37 Aligned_cols=61 Identities=11% Similarity=0.070 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC--CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012800 254 GYCTVIAAFVKIGRLKEATDYMEQMVTD--GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 314 (456)
Q Consensus 254 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 314 (456)
+...+...|.+.|+++.|.+.+.++... +...-...+..+++.+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3344555555555555555555555442 122223444555555555666666665555543
No 266
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.30 E-value=26 Score=31.63 Aligned_cols=65 Identities=12% Similarity=-0.007 Sum_probs=39.9
Q ss_pred HhHHHHHHHHHHcCCChhHHHHHHHHHHHCCC-CCCH--HhH-HHHHHHHHhcCChhHHHHHHHHHHhC
Q 012800 77 VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGI-PPDV--WSY-NSLMHCLFQLGKPDEANRVFQDMICG 141 (456)
Q Consensus 77 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 141 (456)
...+|.+++.|...+.++.|..+..+..--.. .++. ..| -.+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44577777888888888888888777642100 0111 112 23455666777888888777776654
No 267
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.93 E-value=22 Score=29.92 Aligned_cols=46 Identities=24% Similarity=0.094 Sum_probs=26.2
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh
Q 012800 285 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 334 (456)
Q Consensus 285 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 334 (456)
-++.....+...|.+.+++.+|...|- .|-.++...+..++.-+..
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYK 179 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHH
Confidence 456666677777777777777766652 1223333555444444433
No 268
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=80.74 E-value=13 Score=26.56 Aligned_cols=67 Identities=15% Similarity=0.029 Sum_probs=33.0
Q ss_pred cCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012800 285 LDIVSYNTLINLYCKEGKL---EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 351 (456)
Q Consensus 285 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (456)
|+..+--.+..++.+..+. .+++.+++.+...+..-.....-.+.-++.+.|+++.|.++.+.+++.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4444444445555554433 344555555554322212333444445556666666666666666554
No 269
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.35 E-value=29 Score=29.19 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHH
Q 012800 356 NLEAYNCIVDRLGKDGKIDHAINVF 380 (456)
Q Consensus 356 ~~~~~~~l~~~~~~~g~~~~a~~~~ 380 (456)
++.....+...|.+.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 3444444555555555555555544
No 270
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.20 E-value=14 Score=24.37 Aligned_cols=49 Identities=16% Similarity=0.054 Sum_probs=19.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 012800 122 LFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH 176 (456)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 176 (456)
+...|++++|..+.+.+. .||...|..+. -.+.|..+++...+..+...
T Consensus 49 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHHhC
Confidence 344444444444433322 34444443332 22344444444444444333
No 271
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=75.25 E-value=15 Score=24.27 Aligned_cols=49 Identities=10% Similarity=0.030 Sum_probs=20.6
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 012800 122 LFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH 176 (456)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 176 (456)
+...|++++|..+.+.+. .||...|..+. -.+.|..+++...+..+...
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHHHHHTTC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHHhC
Confidence 344445555444443332 34444443332 22344444444444444433
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=75.07 E-value=26 Score=26.86 Aligned_cols=53 Identities=17% Similarity=0.058 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 012800 93 LSCSLDLLDEMLEMGIPP-DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTP 145 (456)
Q Consensus 93 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 145 (456)
...+.++|..|...|+-. -...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555555555544321 23445555555555566666666655555554444
No 273
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=70.86 E-value=23 Score=28.58 Aligned_cols=13 Identities=0% Similarity=0.095 Sum_probs=5.8
Q ss_pred HHHhhCcHHHHHH
Q 012800 16 TFCKANRLEKAEA 28 (456)
Q Consensus 16 ~~~~~g~~~~A~~ 28 (456)
..++.|+.+....
T Consensus 11 ~A~~~g~~~~v~~ 23 (285)
T 1wdy_A 11 KAVQNEDVDLVQQ 23 (285)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHH
Confidence 3444555543333
No 274
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=69.60 E-value=32 Score=25.55 Aligned_cols=80 Identities=23% Similarity=0.102 Sum_probs=47.4
Q ss_pred HhCCCHHHHHHHHHHhccCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC----------------CCH-HhHHHHH
Q 012800 368 GKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR----------------ILK-SAQKAVV 430 (456)
Q Consensus 368 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~-~~~~~l~ 430 (456)
.-.|.+..++-++.....-...-|..+ +|.+..++..|...++..++-.+. .|. ..+..++
T Consensus 44 yyngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a 121 (242)
T 3kae_A 44 YLNGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLG 121 (242)
T ss_dssp HHTTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHH
T ss_pred hhcchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHH
Confidence 345666666555544433222333322 455666677777766666633222 122 3556677
Q ss_pred HHHHccCChHHHHHHHHHH
Q 012800 431 DGLRHSGCRREAKKIQSKI 449 (456)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~~ 449 (456)
..|...|+.++|.+.+..-
T Consensus 122 ~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 122 DLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHhhhHhhhh
Confidence 8899999999999988754
No 275
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=66.26 E-value=25 Score=23.20 Aligned_cols=87 Identities=16% Similarity=0.191 Sum_probs=50.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 012800 55 FVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRV 134 (456)
Q Consensus 55 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 134 (456)
....++|..+-+.+...+. ....--+-+..+...|++++|..+.+.+. -||...|..| +-.+.|..+++..-
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~r 90 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFAL--CEWHLGLGAALDRR 90 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHH--HHHHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHH
Confidence 3456777777777766532 22222222344567777777776665443 4666666554 33566777777777
Q ss_pred HHHHHhCCCCCChhHH
Q 012800 135 FQDMICGDLTPCTATF 150 (456)
Q Consensus 135 ~~~~~~~~~~~~~~~~ 150 (456)
+.++..+| .|....|
T Consensus 91 L~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 91 LAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTCS-SHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 76776666 4544444
No 276
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=65.84 E-value=77 Score=31.56 Aligned_cols=85 Identities=15% Similarity=0.063 Sum_probs=52.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---------------------
Q 012800 328 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--------------------- 386 (456)
Q Consensus 328 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------------- 386 (456)
++..|...|.++-+.++. .. .+.++..-..++.+|...|++++|...|+++...
T Consensus 816 l~~~L~~~~~~~~a~eL~----~~-~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----GW-LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----GG-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHHHHH----hh-cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Confidence 455566666665544322 22 2334444445666777788888888888765422
Q ss_pred -----ChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 012800 387 -----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 417 (456)
Q Consensus 387 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 417 (456)
...-|..++..+-+.+-++-++++.+.+++.
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1124667777777888888888888888765
No 277
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=64.96 E-value=27 Score=23.10 Aligned_cols=87 Identities=13% Similarity=0.144 Sum_probs=48.1
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 012800 55 FVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRV 134 (456)
Q Consensus 55 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 134 (456)
....++|..+-+.+...+. ....--+-+..+...|++++|..+.+.+. -||...|..|. -.+.|..+++..-
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~r 91 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESR 91 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHH
Confidence 3456677777666666532 22222222344556777777776665543 36666665543 3456666666666
Q ss_pred HHHHHhCCCCCChhHH
Q 012800 135 FQDMICGDLTPCTATF 150 (456)
Q Consensus 135 ~~~~~~~~~~~~~~~~ 150 (456)
+.++..+| .|....|
T Consensus 92 L~~la~sg-~p~~q~F 106 (116)
T 2p58_C 92 LNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHTTCC-CHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 66666655 4444444
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=64.80 E-value=45 Score=25.55 Aligned_cols=49 Identities=14% Similarity=0.086 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHhccC
Q 012800 338 IKGARLHLEYMNKIGFDSN-LEAYNCIVDRLGKDGKIDHAINVFESMEVK 386 (456)
Q Consensus 338 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (456)
......+|..|...|+-.. +..|......+...|++.+|.++|+..++.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4455555555555544322 344555555555556666666666555444
No 279
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=59.80 E-value=56 Score=24.95 Aligned_cols=184 Identities=10% Similarity=-0.013 Sum_probs=108.0
Q ss_pred HHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHH
Q 012800 25 KAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEML 104 (456)
Q Consensus 25 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 104 (456)
++...+....+ .++...-...+..+.+.|..+ +...+..+.. .++...-...+.++...+..+ +...+..+.
T Consensus 19 ~~~~~L~~~L~---~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l 90 (211)
T 3ltm_A 19 EKVEMYIKNLQ---DDSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKAL 90 (211)
T ss_dssp GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHT
T ss_pred hHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHH
Confidence 34444444443 356666667777777777644 3444444443 246666666677777777643 444444444
Q ss_pred HCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHH
Q 012800 105 EMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVT 184 (456)
Q Consensus 105 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 184 (456)
. .++..+-...+.++.+.|+.+. ...+..+.. .++..+-...+.++...+..+ +...+..+.+ .++...
T Consensus 91 ~---~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~v 159 (211)
T 3ltm_A 91 K---DEDGWVRQSAAVALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWV 159 (211)
T ss_dssp T---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHH
T ss_pred c---CCCHHHHHHHHHHHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHH
Confidence 3 2577777777888888887544 444444443 456666667777777777654 4455555543 346667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 012800 185 YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR 231 (456)
Q Consensus 185 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 231 (456)
-...+.++.+.+.. .+...+..+.+. ++..+-...+.++...+
T Consensus 160 r~~a~~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 160 RQSAADALGEIGGE-RVRAAMEKLAET---GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHHHHHHCSH-HHHHHHHHHHHH---CCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCch-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcC
Confidence 77777788887764 455555555542 45555555555555443
No 280
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=59.18 E-value=84 Score=26.81 Aligned_cols=24 Identities=8% Similarity=0.145 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHH
Q 012800 10 LNICVCTFCKANRLEKAEAIIIDG 33 (456)
Q Consensus 10 ~~~l~~~~~~~g~~~~A~~~~~~~ 33 (456)
...+|.-|...|+.++|...++++
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL 80 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDL 80 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHh
Confidence 345567777788888888877775
No 281
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=59.05 E-value=50 Score=25.50 Aligned_cols=23 Identities=9% Similarity=0.135 Sum_probs=13.5
Q ss_pred HHHHHcCCChhHHHHHHHHHHHC
Q 012800 84 IAGATRNSLLSCSLDLLDEMLEM 106 (456)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~ 106 (456)
+..|.+.|.+++|.+++++....
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHhcchHHHHHHHHHHhcC
Confidence 34455666666666666665553
No 282
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=58.44 E-value=67 Score=25.43 Aligned_cols=24 Identities=17% Similarity=-0.034 Sum_probs=16.2
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHh
Q 012800 12 ICVCTFCKANRLEKAEAIIIDGIR 35 (456)
Q Consensus 12 ~l~~~~~~~g~~~~A~~~~~~~~~ 35 (456)
.-++.+....++++|+.++++..+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345667777777777777776543
No 283
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=58.24 E-value=68 Score=25.41 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 012800 355 SNLEAYNCIVDRLGKDGKIDHAINVFESM 383 (456)
Q Consensus 355 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 383 (456)
++.......+..+.+.|+.++|.++|-+.
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 34445555556666667777776666544
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=57.79 E-value=51 Score=23.90 Aligned_cols=54 Identities=20% Similarity=0.148 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh
Q 012800 94 SCSLDLLDEMLEMGIPP-DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCT 147 (456)
Q Consensus 94 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 147 (456)
+.+.++|..|...|+-. -...|......+-..|++.+|.++|+.-++.+-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 44888999888876543 4566788888888999999999999998887766643
No 285
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=56.02 E-value=48 Score=24.08 Aligned_cols=65 Identities=8% Similarity=0.100 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCC--hhHHHHHHHHHHhCCCC
Q 012800 9 LLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVS--FDAGYTILNRMREAGIS 74 (456)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 74 (456)
....++.-|...|+.++|.+.++++..-. -....+...+..++-+.++ .+.+..++..+...|+-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34567888888999999999998874211 0112233444444544322 34566777777665543
No 286
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=54.63 E-value=63 Score=25.15 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=9.5
Q ss_pred HccCChhHHHHHHHHHHhCC
Q 012800 53 CQFVSFDAGYTILNRMREAG 72 (456)
Q Consensus 53 ~~~~~~~~a~~~~~~~~~~~ 72 (456)
++.|+.+....+++.+.+.|
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 34455555555554444433
No 287
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=54.47 E-value=61 Score=23.78 Aligned_cols=49 Identities=4% Similarity=-0.182 Sum_probs=21.5
Q ss_pred CChhHHHHHHHHHHHcCCCC--CHHhHHHHHH------HHHccCChHHHHHHHHHHH
Q 012800 402 KRLPSASKLLLSCLKSGVRI--LKSAQKAVVD------GLRHSGCRREAKKIQSKIR 450 (456)
Q Consensus 402 ~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~g~~~~A~~~~~~~~ 450 (456)
|++=+|-++++........+ ....|..++. ...+.|+...|.+++.+..
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55555555555554443232 2233333333 1233455555555555443
No 288
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=54.26 E-value=68 Score=24.21 Aligned_cols=170 Identities=11% Similarity=-0.010 Sum_probs=84.5
Q ss_pred CCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 012800 40 PDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLM 119 (456)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 119 (456)
++...-...+..+.+.+..+....+. .+.. .++...-...+.++...+..+ +...+..+... ++..+-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALKD---EDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHcC---CCHHHHHHHH
Confidence 34444444455555554433332233 2222 234444445555555555543 33333344432 4666666666
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHH
Q 012800 120 HCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 199 (456)
Q Consensus 120 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 199 (456)
.++.+.++.+.. ..+..+.. .++..+-...+.++.+.++.+ +...+..+... ++...-...+.++...|..+
T Consensus 98 ~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~~~ 169 (201)
T 3ltj_A 98 VALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALKD---EDGWVRQSAADALGEIGGER 169 (201)
T ss_dssp HHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCSHH
T ss_pred HHHHHhCcHHHH-HHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHhCchh
Confidence 777777765433 33333332 445555556666666666543 44444444432 45666666667777776643
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 012800 200 TARWILKELGDSGHAPNAITYTTIMKCCFR 229 (456)
Q Consensus 200 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (456)
+...+..+... ++...-...+.++.+
T Consensus 170 -~~~~L~~~l~d---~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 170 -VRAAMEKLAET---GTGFARKVAVNYLET 195 (201)
T ss_dssp -HHHHHHHHHHH---CCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 44444444432 355554444444444
No 289
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=52.50 E-value=1.1e+02 Score=26.12 Aligned_cols=73 Identities=18% Similarity=0.110 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012800 290 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN--IKGARLHLEYMNKIGFDSNLEAYNCI 363 (456)
Q Consensus 290 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 363 (456)
...++.-|...|+.++|...++++....+. ...+...+..++-+.++ .+....++..+...|+-+.......+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf 294 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGY 294 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 467788888899999999999888632111 22233444444444333 34567777777776655544444433
No 290
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=51.11 E-value=48 Score=24.36 Aligned_cols=25 Identities=8% Similarity=0.151 Sum_probs=11.7
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhC
Q 012800 47 MLIDAYCQFVSFDAGYTILNRMREA 71 (456)
Q Consensus 47 ~l~~~~~~~~~~~~a~~~~~~~~~~ 71 (456)
.++..+...+..-.|.++++.+.+.
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQA 61 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhh
Confidence 3444444444444455555555443
No 291
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=50.82 E-value=80 Score=24.03 Aligned_cols=17 Identities=12% Similarity=0.172 Sum_probs=6.9
Q ss_pred CHHhHHHHHHHHHhcCC
Q 012800 111 DVWSYNSLMHCLFQLGK 127 (456)
Q Consensus 111 ~~~~~~~l~~~~~~~~~ 127 (456)
+...-...+..+.+.|.
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33333334444444443
No 292
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=50.45 E-value=73 Score=23.47 Aligned_cols=52 Identities=21% Similarity=0.138 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 012800 95 CSLDLLDEMLEMGIPP-DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPC 146 (456)
Q Consensus 95 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 146 (456)
...++|..|...|+-. -...|......+-..|++.+|.++|..-++.+-.|.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 3556666666665432 344566666666677777777777777666655554
No 293
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=50.19 E-value=21 Score=28.53 Aligned_cols=19 Identities=16% Similarity=-0.134 Sum_probs=8.2
Q ss_pred ccCChhHHHHHHHHHHhCC
Q 012800 54 QFVSFDAGYTILNRMREAG 72 (456)
Q Consensus 54 ~~~~~~~a~~~~~~~~~~~ 72 (456)
+.|+.+....+++.+.+.|
T Consensus 14 ~~g~~~~v~~ll~~l~~~~ 32 (260)
T 3jxi_A 14 SRGSPDGLEGLLSFLLTHK 32 (260)
T ss_dssp HHTCGGGGTTHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcC
Confidence 3444444444444444333
No 294
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=49.88 E-value=12 Score=30.14 Aligned_cols=57 Identities=9% Similarity=-0.094 Sum_probs=36.4
Q ss_pred HHHHHhhCcHHHHHHHHHHHHhcCCCCCHHh-------HHHHHHHHH--ccCChhHHHHHHHHHHh
Q 012800 14 VCTFCKANRLEKAEAIIIDGIRLGVLPDVVT-------YNMLIDAYC--QFVSFDAGYTILNRMRE 70 (456)
Q Consensus 14 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~~~~ 70 (456)
+...++.|+.+....+++.+.+.+..++... .+.|..+.. +.|+.+-+..+++.-..
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~ 74 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEK 74 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhccc
Confidence 4456678999888888887777665555332 233444332 66888777777766543
No 295
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=49.22 E-value=73 Score=23.10 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=15.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 012800 291 NTLINLYCKEGKLEAAYLLLDEME 314 (456)
Q Consensus 291 ~~l~~~~~~~~~~~~a~~~~~~~~ 314 (456)
..++.-|...|+.++|...++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 445666666667777666666664
No 296
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=47.92 E-value=53 Score=26.39 Aligned_cols=13 Identities=8% Similarity=0.210 Sum_probs=5.6
Q ss_pred hCCCHHHHHHHHH
Q 012800 369 KDGKIDHAINVFE 381 (456)
Q Consensus 369 ~~g~~~~a~~~~~ 381 (456)
+.|+.+-+..+++
T Consensus 228 ~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 228 EKKHLGLVQRLLE 240 (285)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHh
Confidence 3444444444443
No 297
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=46.89 E-value=74 Score=22.72 Aligned_cols=33 Identities=12% Similarity=0.025 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcc
Q 012800 404 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 436 (456)
Q Consensus 404 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 436 (456)
.-.|.++++.+.+.++..+..|..-.+..+...
T Consensus 37 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 69 (145)
T 2fe3_A 37 HPTADDIYKALEGKFPNMSVATVYNNLRVFRES 69 (145)
T ss_dssp CCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHC
Confidence 334444444444433333333333333333333
No 298
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=46.02 E-value=83 Score=22.83 Aligned_cols=47 Identities=11% Similarity=0.010 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCCCc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 012800 306 AYLLLDEMEKQGFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 352 (456)
Q Consensus 306 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 352 (456)
+..+|..|...|+-. -...|......+...|++.+|..+++.-++.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 344444444433322 12233334444444444444444444444433
No 299
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=44.66 E-value=57 Score=25.48 Aligned_cols=84 Identities=15% Similarity=0.106 Sum_probs=57.4
Q ss_pred HHHHHHHHHhC-----CCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCChhHHHHH
Q 012800 61 GYTILNRMREA-----GISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPP-DVWSYNSLMHCLFQLGKPDEANRV 134 (456)
Q Consensus 61 a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 134 (456)
-..++++..+. ...-|+.-...-+. |+.. .+...++|..|...|+-. -...|......+-..|++.+|.++
T Consensus 96 L~~lLErc~~~F~~~~rYknD~RyLklWl~-Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~V 172 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKDDVRYLRIWMQ-YVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEV 172 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHH-HHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHH-HHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45666666543 12334443333332 3332 357889999999987543 466788889999999999999999
Q ss_pred HHHHHhCCCCCCh
Q 012800 135 FQDMICGDLTPCT 147 (456)
Q Consensus 135 ~~~~~~~~~~~~~ 147 (456)
|+.-++.+-.|-.
T Consensus 173 y~~Gi~~~A~P~~ 185 (223)
T 4aez_C 173 YQKGKRMKAKPFL 185 (223)
T ss_dssp HHHHHHHTCBSHH
T ss_pred HHHHHHcCCccHH
Confidence 9999887766643
No 300
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=44.57 E-value=31 Score=20.13 Aligned_cols=22 Identities=27% Similarity=0.172 Sum_probs=12.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCC
Q 012800 55 FVSFDAGYTILNRMREAGISPD 76 (456)
Q Consensus 55 ~~~~~~a~~~~~~~~~~~~~~~ 76 (456)
.|+.+.|+..+-.|...+..|+
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSCC
T ss_pred CCCHHHHHHHHHcCcCCCCCCC
Confidence 5666666666666655444443
No 301
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=43.75 E-value=34 Score=26.00 Aligned_cols=20 Identities=5% Similarity=0.051 Sum_probs=10.6
Q ss_pred HHHHHccCChhHHHHHHHHH
Q 012800 395 VHNLCKAKRLPSASKLLLSC 414 (456)
Q Consensus 395 ~~~~~~~~~~~~A~~~~~~~ 414 (456)
+..|.+.|.+++|.+++++.
T Consensus 124 V~VCiekg~Fk~A~eiLkr~ 143 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERI 143 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHH
Confidence 34455555555555555554
No 302
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=43.09 E-value=85 Score=23.00 Aligned_cols=35 Identities=6% Similarity=0.115 Sum_probs=17.1
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhc
Q 012800 349 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 384 (456)
Q Consensus 349 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 384 (456)
.+.|+..+.. -..++..+...+..-.|.++++.+.
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~ 59 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIK 59 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHH
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 3445555533 2233444445555555666665543
No 303
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.92 E-value=1.9e+02 Score=26.17 Aligned_cols=65 Identities=9% Similarity=0.136 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-ccCHH--H-HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012800 252 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV-QLDIV--S-YNTLINLYCKEGKLEAAYLLLDEMEKQ 316 (456)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~--~-~~~l~~~~~~~~~~~~a~~~~~~~~~~ 316 (456)
...++.+++.|...+.++.|..+..+..--.. .++.. . +-.+.+.+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45678888889999999999999888752100 11111 1 223456677788999998888887764
No 304
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=42.36 E-value=82 Score=24.62 Aligned_cols=46 Identities=9% Similarity=0.101 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHhcc
Q 012800 340 GARLHLEYMNKIGFDSN-LEAYNCIVDRLGKDGKIDHAINVFESMEV 385 (456)
Q Consensus 340 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 385 (456)
....+|..|...|+-.. ...|......+...|++.+|.++|+..+.
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445555544443222 33344444444455555555555554443
No 305
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=42.10 E-value=58 Score=24.45 Aligned_cols=16 Identities=13% Similarity=0.169 Sum_probs=9.4
Q ss_pred HHHhhCcHHHHHHHHH
Q 012800 16 TFCKANRLEKAEAIII 31 (456)
Q Consensus 16 ~~~~~g~~~~A~~~~~ 31 (456)
..+..|+.+....++.
T Consensus 11 ~A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 11 EAANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHHTTCHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHH
Confidence 3455677666666554
No 306
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=42.10 E-value=86 Score=21.90 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=15.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 012800 291 NTLINLYCKEGKLEAAYLLLDEME 314 (456)
Q Consensus 291 ~~l~~~~~~~~~~~~a~~~~~~~~ 314 (456)
..++.-|...|+.++|...++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 445566666666666666666654
No 307
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=41.61 E-value=1.9e+02 Score=25.74 Aligned_cols=137 Identities=12% Similarity=0.076 Sum_probs=67.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 012800 300 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 379 (456)
Q Consensus 300 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 379 (456)
..+.+-|.++.. +.|++--...|..-...+...|++++|.++-....+ |+--+..+.+.+-.+-..-|...--..+
T Consensus 342 l~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 355665554432 334443445566666667777777777776655443 3344556655544433344555555555
Q ss_pred HHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 012800 380 FESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS-GVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 449 (456)
Q Consensus 380 ~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 449 (456)
|..+.+. +..--..+++.-..+|+.+ ++++.++. .+..+.. +.-++ +..+..-|..+|.+.
T Consensus 418 F~~Ll~~g~Ln~~ESlEl~r~vL~q~r~~----llekWl~e~KL~~SEe-LGDlv----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 418 FGILLDQGQLNKYESLELCRPVLQQGRKQ----LLEKWLKEDKLECSEE-LGDLV----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHTTCHH----HHHHHHHHTCSCCCHH-HHHHH----HHHCSHHHHHHHHHH
T ss_pred HHHHhccCccchHHhhHHhHHHHhccHHH----HHHHHHhcCCccccHH-hHhhh----hhcCHHHHHHHHHHc
Confidence 5555443 2222223444444455543 33333333 2332222 22222 334667777777664
No 308
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=40.78 E-value=85 Score=24.35 Aligned_cols=85 Identities=14% Similarity=0.043 Sum_probs=43.1
Q ss_pred HHHHHhhCcHHHHHHHHHHHHhcCCCCCHHh--HHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhH--HHHHHHHHHc
Q 012800 14 VCTFCKANRLEKAEAIIIDGIRLGVLPDVVT--YNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVT--YNSLIAGATR 89 (456)
Q Consensus 14 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~ 89 (456)
+...++.|+.+-+..+++...+.+..++... -.+.+...+..|+.+- ++.+.+.|..++... -...+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 4456677999888888887666554443221 1123444455666543 344444554433211 1123334445
Q ss_pred CCChhHHHHHHHH
Q 012800 90 NSLLSCSLDLLDE 102 (456)
Q Consensus 90 ~~~~~~a~~~~~~ 102 (456)
.|+.+-...+++.
T Consensus 89 ~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 89 HRSPTCLRALLDS 101 (241)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHc
Confidence 6665544444443
No 309
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=40.39 E-value=2.4e+02 Score=28.17 Aligned_cols=49 Identities=18% Similarity=0.014 Sum_probs=35.1
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh----hHHHHHHHHHHhcC
Q 012800 113 WSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCT----ATFNIMLNGLCKNR 161 (456)
Q Consensus 113 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 161 (456)
.-|..++..+-+.+.++.+.++-+..++.--+.|. ..|..+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 36788999999999999999988888764322232 35667777766544
No 310
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=38.43 E-value=67 Score=22.44 Aligned_cols=45 Identities=18% Similarity=0.115 Sum_probs=29.7
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCC
Q 012800 394 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 438 (456)
Q Consensus 394 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 438 (456)
++..+...+..-.|.++++.+.+.++..+..|..-.+..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 445555556666777777777776666666666666666666664
No 311
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=37.48 E-value=1.1e+02 Score=21.81 Aligned_cols=45 Identities=7% Similarity=0.005 Sum_probs=19.8
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCC
Q 012800 47 MLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNS 91 (456)
Q Consensus 47 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 91 (456)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 26 ~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 26 AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 344444444444455555555554443334444333334444333
No 312
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=37.00 E-value=66 Score=24.89 Aligned_cols=6 Identities=0% Similarity=-0.368 Sum_probs=2.3
Q ss_pred HhcCCh
Q 012800 123 FQLGKP 128 (456)
Q Consensus 123 ~~~~~~ 128 (456)
+..|+.
T Consensus 50 ~~~~~~ 55 (240)
T 3eu9_A 50 AINNRI 55 (240)
T ss_dssp HHTTCH
T ss_pred HHhCCH
Confidence 333443
No 313
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=36.86 E-value=2.8e+02 Score=26.21 Aligned_cols=16 Identities=6% Similarity=-0.137 Sum_probs=12.7
Q ss_pred HccCChhHHHHHHHHH
Q 012800 399 CKAKRLPSASKLLLSC 414 (456)
Q Consensus 399 ~~~~~~~~A~~~~~~~ 414 (456)
.+.|+++.|++.+++.
T Consensus 549 ~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 549 YFNKQWQETLSQMELL 564 (661)
T ss_dssp HHTTCHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhC
Confidence 6788888888887776
No 314
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=36.56 E-value=76 Score=24.55 Aligned_cols=16 Identities=6% Similarity=0.106 Sum_probs=8.7
Q ss_pred HHHhhCcHHHHHHHHH
Q 012800 16 TFCKANRLEKAEAIII 31 (456)
Q Consensus 16 ~~~~~g~~~~A~~~~~ 31 (456)
..++.|+++....+++
T Consensus 15 ~A~~~g~~~~~~~Ll~ 30 (240)
T 3eu9_A 15 KATQYGIYERCRELVE 30 (240)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHH
Confidence 3456677655544444
No 315
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=36.20 E-value=1.2e+02 Score=21.82 Aligned_cols=43 Identities=7% Similarity=0.081 Sum_probs=18.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC
Q 012800 294 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 336 (456)
Q Consensus 294 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 336 (456)
+..+...+..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 33 L~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 33 VSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333333344445555555544433334444333333343333
No 316
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=35.85 E-value=1.1e+02 Score=21.43 Aligned_cols=43 Identities=9% Similarity=0.070 Sum_probs=18.2
Q ss_pred HHHHHHHccC-ChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 012800 47 MLIDAYCQFV-SFDAGYTILNRMREAGISPDVVTYNSLIAGATR 89 (456)
Q Consensus 47 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 89 (456)
.++..+...+ ..-.|.++++.+.+.+...+..|...-+..+..
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 65 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEA 65 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 3444444333 444555555555554433343333333333333
No 317
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=35.68 E-value=75 Score=25.84 Aligned_cols=7 Identities=14% Similarity=0.396 Sum_probs=2.7
Q ss_pred hcCchhH
Q 012800 229 RNRKYKL 235 (456)
Q Consensus 229 ~~~~~~~ 235 (456)
..|+.+-
T Consensus 170 ~~g~~~~ 176 (285)
T 3kea_A 170 KNGHVDM 176 (285)
T ss_dssp HTTCHHH
T ss_pred HcChHHH
Confidence 3344333
No 318
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=35.59 E-value=68 Score=22.75 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=26.4
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCC
Q 012800 394 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 438 (456)
Q Consensus 394 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 438 (456)
++..+...++.-.|.++++.+.+.++..+..|..-.+..+...|-
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 444445555556666777666666555566665555555555553
No 319
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=35.20 E-value=42 Score=23.53 Aligned_cols=47 Identities=11% Similarity=0.182 Sum_probs=28.0
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCCh
Q 012800 47 MLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLL 93 (456)
Q Consensus 47 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 93 (456)
.++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 44555555555666777777776665555555555556666665543
No 320
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=35.13 E-value=1.2e+02 Score=21.72 Aligned_cols=44 Identities=5% Similarity=0.059 Sum_probs=18.2
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcC
Q 012800 47 MLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRN 90 (456)
Q Consensus 47 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 90 (456)
.++..+...+..-.|.++++.+.+.+...+..|.-..+..+...
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 74 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKE 74 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 34444444444444555555554443333333333333333333
No 321
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=34.97 E-value=1.6e+02 Score=22.87 Aligned_cols=22 Identities=5% Similarity=0.126 Sum_probs=13.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 012800 120 HCLFQLGKPDEANRVFQDMICG 141 (456)
Q Consensus 120 ~~~~~~~~~~~a~~~~~~~~~~ 141 (456)
..|.+.|.+++|.+++++..+.
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHhcchHHHHHHHHHHhcC
Confidence 4466666666666666666543
No 322
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=34.50 E-value=1.1e+02 Score=21.87 Aligned_cols=41 Identities=12% Similarity=0.124 Sum_probs=17.2
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 012800 48 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATR 89 (456)
Q Consensus 48 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 89 (456)
++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+..
T Consensus 24 Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e 64 (145)
T 3eyy_A 24 VLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEE 64 (145)
T ss_dssp HHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHH
Confidence 333333333 44455555555544433343333333333333
No 323
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=34.28 E-value=1.3e+02 Score=21.64 Aligned_cols=45 Identities=7% Similarity=0.069 Sum_probs=20.6
Q ss_pred HHHHHHHccC-ChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCC
Q 012800 47 MLIDAYCQFV-SFDAGYTILNRMREAGISPDVVTYNSLIAGATRNS 91 (456)
Q Consensus 47 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 91 (456)
.++..+...+ ..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 21 ~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 21 KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3444444443 44455555555555443344444333344444444
No 324
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=33.86 E-value=90 Score=25.34 Aligned_cols=144 Identities=10% Similarity=-0.009 Sum_probs=67.9
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHh--HHHHHHHHHhcC
Q 012800 49 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWS--YNSLMHCLFQLG 126 (456)
Q Consensus 49 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~ 126 (456)
+...+..|+.+-+..+++ .|..++...-...+...+..|+.+-+ +.+.+.|..++... -.+.+...+..|
T Consensus 35 L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~g 106 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALYYAVDSG 106 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHHHHHHcC
Confidence 444455677765555544 34333322122344555666766544 34445555443211 112344556677
Q ss_pred ChhHHHHHHHHHHhCCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcCCHHHHH
Q 012800 127 KPDEANRVFQDMICGDLTPC---TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVP-ELVTYNILIKGLCKAGRLRTAR 202 (456)
Q Consensus 127 ~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~ 202 (456)
+.+-+.-+++. |..++ ..-+...+...+..|..+-+ +.+.+.|..+ +...-...+...+..|+.+-+.
T Consensus 107 ~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~ 178 (285)
T 3kea_A 107 NMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMI 178 (285)
T ss_dssp CHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHH
Confidence 76655555544 32222 12222344455566665544 3344444332 1102223344456778877766
Q ss_pred HHHHHH
Q 012800 203 WILKEL 208 (456)
Q Consensus 203 ~~~~~~ 208 (456)
.+++.-
T Consensus 179 ~Ll~~g 184 (285)
T 3kea_A 179 LLLDYM 184 (285)
T ss_dssp HHHHHH
T ss_pred HHHHcC
Confidence 666543
No 325
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=33.58 E-value=1.8e+02 Score=23.24 Aligned_cols=121 Identities=10% Similarity=-0.037 Sum_probs=50.8
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012800 285 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG-NIKGARLHLEYMNKIGFDSNLEAYNCI 363 (456)
Q Consensus 285 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l 363 (456)
++..+-...+.++...|+.+ +...+..+.. .++..+-...+.++...+ ....+...+..+.. .++..+-...
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A 212 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEA 212 (280)
T ss_dssp SCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHH
Confidence 34455555555555555432 3333333332 234444444444444443 12334444433332 3455555555
Q ss_pred HHHHHhCCCHHHHHHHHHHhccCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 012800 364 VDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCL 415 (456)
Q Consensus 364 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 415 (456)
+.++.+.|+......+...+...+ .-...+.++.+.|. .++...+.+++
T Consensus 213 ~~aL~~~~~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-~~~~~~L~~~l 261 (280)
T 1oyz_A 213 IIGLSYRKDKRVLSVLCDELKKNT--VYDDIIEAAGELGD-KTLLPVLDTML 261 (280)
T ss_dssp HHHHHHTTCGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-GGGHHHHHHHH
T ss_pred HHHHHHhCCHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-hhhhHHHHHHH
Confidence 566666664433333333222222 22233444455454 24444454444
No 326
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=33.36 E-value=1.4e+02 Score=21.92 Aligned_cols=55 Identities=7% Similarity=-0.039 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHH
Q 012800 129 DEANRVFQDMICGDLTP-CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELV 183 (456)
Q Consensus 129 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 183 (456)
+...++|..|...++-. -+..|......+-..|++.+|.++|..-.+.+..|...
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 34667888888776543 35567777788888899999999999988887777653
No 327
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=32.82 E-value=89 Score=20.24 Aligned_cols=28 Identities=11% Similarity=-0.034 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHhhCcHHHHHHHHHHHH
Q 012800 7 TRLLNICVCTFCKANRLEKAEAIIIDGI 34 (456)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 34 (456)
+..+....+.+.+.|+|++|++..+.+.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 3455667788888888888877666543
No 328
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=31.86 E-value=84 Score=18.79 Aligned_cols=47 Identities=11% Similarity=-0.037 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcc
Q 012800 8 RLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQF 55 (456)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 55 (456)
..++.+++.+.+..-.++++-.++++++.|. .+...|-.-++.+++.
T Consensus 3 pl~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 3 DGLNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 3566777777777788888888888888773 5777776666666543
No 329
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=31.19 E-value=99 Score=21.87 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=20.5
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 012800 83 LIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLG 126 (456)
Q Consensus 83 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 126 (456)
++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 33444444444455555555555444444444434444444444
No 330
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=31.18 E-value=1.4e+02 Score=20.99 Aligned_cols=60 Identities=12% Similarity=0.142 Sum_probs=36.1
Q ss_pred HHhCCCCCCHhHHHHHHHHHHcCC-ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCh
Q 012800 68 MREAGISPDVVTYNSLIAGATRNS-LLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 128 (456)
Q Consensus 68 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 128 (456)
+.+.|..++..- ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 455666555433 33455555555 6677888888887776666666655556666666543
No 331
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=30.94 E-value=1.5e+02 Score=21.31 Aligned_cols=62 Identities=8% Similarity=0.165 Sum_probs=38.1
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHcCC-ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChh
Q 012800 67 RMREAGISPDVVTYNSLIAGATRNS-LLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPD 129 (456)
Q Consensus 67 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 129 (456)
.+.+.|+.++..- ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+.
T Consensus 7 ~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 7 ALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 3556666655443 23445555555 56678888888877766666666655666666666543
No 332
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=30.70 E-value=2.1e+02 Score=22.93 Aligned_cols=83 Identities=8% Similarity=-0.117 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCccCHHHHHHH
Q 012800 215 PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG-RLKEATDYMEQMVTDGVQLDIVSYNTL 293 (456)
Q Consensus 215 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l 293 (456)
++..+-...+.++...++.+ +...+..+.. .++..+-...+.++...+ ....+...+..+... ++..+-...
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d---~~~~vR~~A 212 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQD---KNEEVRIEA 212 (280)
T ss_dssp SCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTC---SCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcC---CCHHHHHHH
Confidence 34444444444444444422 2222222222 233333344444444443 123333444333332 344444555
Q ss_pred HHHHHhcCCHH
Q 012800 294 INLYCKEGKLE 304 (456)
Q Consensus 294 ~~~~~~~~~~~ 304 (456)
+.++...|+..
T Consensus 213 ~~aL~~~~~~~ 223 (280)
T 1oyz_A 213 IIGLSYRKDKR 223 (280)
T ss_dssp HHHHHHTTCGG
T ss_pred HHHHHHhCCHh
Confidence 55566666543
No 333
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=30.58 E-value=1.7e+02 Score=21.88 Aligned_cols=171 Identities=9% Similarity=-0.051 Sum_probs=84.9
Q ss_pred CHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 012800 76 DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLN 155 (456)
Q Consensus 76 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 155 (456)
+...-...+..+...+..+ +...+-.+.. .++...-...+..+...|+.+.. ..+..+.. .++..+-...+.
T Consensus 27 ~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~ 98 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAAV 98 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChh-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHHH
Confidence 4444444444444444432 2233333332 24555555566666666654433 33333332 345556666666
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhH
Q 012800 156 GLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL 235 (456)
Q Consensus 156 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 235 (456)
++.+.++.+. ...+..+.. .++...-...+.++.+.++.+ +...+..+.. .++..+-...+.++...++. .
T Consensus 99 aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~-~ 169 (201)
T 3ltj_A 99 ALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE-R 169 (201)
T ss_dssp HHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-H
T ss_pred HHHHhCcHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-h
Confidence 7777666543 333333433 246556666666666666533 3344444443 24666666666666666653 3
Q ss_pred HHHHHHHHHHcCCCcChhhHHHHHHHHHHcC
Q 012800 236 GLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 266 (456)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (456)
+...+..+.+. ++..+-...+.++.+.+
T Consensus 170 ~~~~L~~~l~d---~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 170 VRAAMEKLAET---GTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHHH---CCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHHHHHH
Confidence 44455555433 34445555555555443
No 334
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=30.38 E-value=42 Score=19.60 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 012800 24 EKAEAIIIDGIRLGVLPDVVTYNMLIDAY 52 (456)
Q Consensus 24 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 52 (456)
++|...|.+|++..-.++.-+|...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34555555555443333444555555555
No 335
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=29.79 E-value=1.2e+02 Score=22.49 Aligned_cols=10 Identities=20% Similarity=0.554 Sum_probs=4.3
Q ss_pred HHHHHHHHcC
Q 012800 238 EILSAMKRKG 247 (456)
Q Consensus 238 ~~~~~~~~~~ 247 (456)
++.+.+.+.|
T Consensus 159 ~~v~~Ll~~g 168 (201)
T 3hra_A 159 DIVKLLMENG 168 (201)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHCC
Confidence 3444444444
No 336
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=29.54 E-value=1.9e+02 Score=22.90 Aligned_cols=32 Identities=9% Similarity=0.038 Sum_probs=14.5
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCHHhHH
Q 012800 396 HNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 427 (456)
Q Consensus 396 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 427 (456)
...-+.+++++..+.++++.+.+...+..-.+
T Consensus 13 klaeqaeRyddm~~~mk~v~~~~~eLt~EERn 44 (234)
T 2br9_A 13 KLAEQAERYDEMVESMKKVAGMDVELTVEERN 44 (234)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHhcccCCCCHHHHH
Confidence 33344455555555555554444344443333
No 337
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=29.38 E-value=1.7e+02 Score=21.48 Aligned_cols=49 Identities=8% Similarity=-0.029 Sum_probs=22.4
Q ss_pred CcHHHHHHHHHHHHhcCCCC--CHHhHHHHHH-H-----HHccCChhHHHHHHHHHH
Q 012800 21 NRLEKAEAIIIDGIRLGVLP--DVVTYNMLID-A-----YCQFVSFDAGYTILNRMR 69 (456)
Q Consensus 21 g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~ 69 (456)
|++=+|-++|+..-+....+ ....|..||+ + ..+.|+...|..++.+..
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55555555555555443333 2233444444 1 123455555555554443
No 338
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.23 E-value=1e+02 Score=19.02 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 012800 94 SCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQL 125 (456)
Q Consensus 94 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 125 (456)
-.+.++++.+.+.+...+..|....+..+...
T Consensus 34 ~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 34 VSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp BCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 34444444444443333333333333333333
No 339
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=29.16 E-value=1.7e+02 Score=21.40 Aligned_cols=76 Identities=9% Similarity=-0.016 Sum_probs=39.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHH-HHHH-HHHHhccC-ChhhHHHHHHHHHccCChhHHHHHH
Q 012800 335 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID-HAIN-VFESMEVK-DSFTYSSMVHNLCKAKRLPSASKLL 411 (456)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~-~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 411 (456)
..++..++..++...-..+ +...-..|+..|.....+. +-.+ ++..+.-. |+..+ +-+.+.-.|++++|+.+-
T Consensus 21 ~~dYs~VI~~L~~~~~~~L--p~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSde~yL--~YWIyiGRg~~~eAlDiA 96 (161)
T 2ynq_A 21 QNKYSDVITTLEDYAPEDM--PYVIQYELASSYVMTESLTEEQRQTVSNNITLKTDEQYM--LYWIYIGRSQSEEALELA 96 (161)
T ss_dssp TTCHHHHHHHHTTSCGGGS--CHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSCHHHH--HHHHHHHHTCHHHHHHHH
T ss_pred HhhHHHHHHHHhcCChhhC--ChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCCHHHH--HHHHHHcCCchHHHHHHH
Confidence 4567776666665433322 2233445566666655543 2222 22233222 43333 334566778888888877
Q ss_pred HHH
Q 012800 412 LSC 414 (456)
Q Consensus 412 ~~~ 414 (456)
+.+
T Consensus 97 ~~L 99 (161)
T 2ynq_A 97 RTI 99 (161)
T ss_dssp HHH
T ss_pred Hhc
Confidence 766
No 340
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=29.03 E-value=1.9e+02 Score=22.08 Aligned_cols=50 Identities=8% Similarity=0.115 Sum_probs=22.8
Q ss_pred HHHHHhhCcHHHHHHHHHHHHhcCCCCC---HHhHHHHHHHHHccCChhHHHHHHHH
Q 012800 14 VCTFCKANRLEKAEAIIIDGIRLGVLPD---VVTYNMLIDAYCQFVSFDAGYTILNR 67 (456)
Q Consensus 14 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~ 67 (456)
+...++.|+.+....+++. .|..++ ..-++ .+...+..|+.+-+..+++.
T Consensus 7 L~~A~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKF---EGCEVHQRGAMGET-ALHIAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTT---TCSCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCC-HHHHHHHcCCHHHHHHHHHc
Confidence 3345566776555555442 122222 11222 33334456666555555543
No 341
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=28.98 E-value=1.8e+02 Score=21.66 Aligned_cols=91 Identities=13% Similarity=0.026 Sum_probs=42.9
Q ss_pred HHhhCcHHHHHHHHHHHHhcCCCCCH-HhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhH---HHHHHHHHH-cCC
Q 012800 17 FCKANRLEKAEAIIIDGIRLGVLPDV-VTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVT---YNSLIAGAT-RNS 91 (456)
Q Consensus 17 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~-~~~ 91 (456)
.++.|+++....++.. ++.... ..-.+.+...+..|+.+.-.++.+.+.+.|..++... .+.|..++. ...
T Consensus 13 Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~ 88 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGN 88 (186)
T ss_dssp HHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTT
T ss_pred HHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCc
Confidence 4566777765555543 221111 1112344444555665555666666666665554321 222222221 122
Q ss_pred ChhHHHHHHHHHHHCCCCCC
Q 012800 92 LLSCSLDLLDEMLEMGIPPD 111 (456)
Q Consensus 92 ~~~~a~~~~~~~~~~~~~~~ 111 (456)
+.....++.+.+.+.|..++
T Consensus 89 ~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 89 DITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp CHHHHHHHHHHHHHTTCCSS
T ss_pred chhhHHHHHHHHHHCCCCCC
Confidence 33344556666666665544
No 342
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=28.00 E-value=1.1e+02 Score=24.05 Aligned_cols=18 Identities=11% Similarity=-0.071 Sum_probs=7.3
Q ss_pred cCCChhHHHHHHHHHHHC
Q 012800 89 RNSLLSCSLDLLDEMLEM 106 (456)
Q Consensus 89 ~~~~~~~a~~~~~~~~~~ 106 (456)
..|+.+....+++.+.+.
T Consensus 11 ~~g~~~~v~~ll~~l~~~ 28 (256)
T 2etb_A 11 SRGVPEELTGLLEYLRWN 28 (256)
T ss_dssp HHTCGGGGTTHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHc
Confidence 334444443444433333
No 343
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=27.49 E-value=3.3e+02 Score=24.28 Aligned_cols=140 Identities=11% Similarity=0.001 Sum_probs=72.1
Q ss_pred CChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHH
Q 012800 266 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 345 (456)
Q Consensus 266 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 345 (456)
.+.+-|.++. .+.|.+--...|..-...+...|++++|.++.-..... +--+..|.+.+-..=...|+..-...+|
T Consensus 343 ~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~g-iLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKG-ILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGG-SSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccc-cccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 4444444332 23344444445555566677777777777766554432 2335555555544434445556666777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 012800 346 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSC 414 (456)
Q Consensus 346 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 414 (456)
..+.+.| ..+..---.+++.-...|+.+-..+.+.+-.-.-.+-..-++ +..+..-|..+|.++
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e~KL~~SEeLGDlv----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLV----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCSCCCHHHHHHH----HHHCSHHHHHHHHHH
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhcCCccccHHhHhhh----hhcCHHHHHHHHHHc
Confidence 7766665 444444444555555666666666555543322111111111 333455555555555
No 344
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=27.17 E-value=1.3e+02 Score=19.62 Aligned_cols=46 Identities=13% Similarity=0.092 Sum_probs=21.8
Q ss_pred hCCCHHHHHHHHHHhccC----ChhhHHHHHHHH-----HccCChhHHHHHHHHHHH
Q 012800 369 KDGKIDHAINVFESMEVK----DSFTYSSMVHNL-----CKAKRLPSASKLLLSCLK 416 (456)
Q Consensus 369 ~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~-----~~~~~~~~A~~~~~~~~~ 416 (456)
..|++=+|-++++..=.. ....|..+|... .+.|+. |..++.+...
T Consensus 13 n~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 13 RAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 346666666666543222 223333333221 134555 6666666654
No 345
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=27.16 E-value=3.3e+02 Score=24.10 Aligned_cols=56 Identities=9% Similarity=0.122 Sum_probs=34.0
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCc-----hhHHHHHHHHHHHcCCC
Q 012800 194 KAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK-----YKLGLEILSAMKRKGYT 249 (456)
Q Consensus 194 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 249 (456)
+.++.+.|+.++.+|...|..|....-..+..+...-|. ...|...++.....|.|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~p 327 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPA 327 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCc
Confidence 456788888888888887776655555555555544443 33455555555666633
No 346
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=26.93 E-value=1.1e+02 Score=23.32 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=16.1
Q ss_pred HHHHHHHccCChhHHHHHHHHHHh
Q 012800 47 MLIDAYCQFVSFDAGYTILNRMRE 70 (456)
Q Consensus 47 ~l~~~~~~~~~~~~a~~~~~~~~~ 70 (456)
..+..|.+.|.+++|.++|++.-.
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHccchHHHHHHHHHHhc
Confidence 344567777788888877777544
No 347
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=26.17 E-value=4.2e+02 Score=25.01 Aligned_cols=86 Identities=15% Similarity=0.138 Sum_probs=45.7
Q ss_pred HHHHHhCCCHHHHHHHHHHhccCCh--hhHHHHH-HHHHcc----C----------Ch-hHHHHHHHHHHHc-----CC-
Q 012800 364 VDRLGKDGKIDHAINVFESMEVKDS--FTYSSMV-HNLCKA----K----------RL-PSASKLLLSCLKS-----GV- 419 (456)
Q Consensus 364 ~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~l~-~~~~~~----~----------~~-~~A~~~~~~~~~~-----~~- 419 (456)
..-+...|++++|+.+|.-+.+.+. ...+.++ .+.... + ++ .-|.++.+..... .+
T Consensus 450 A~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~ 529 (661)
T 2qx5_A 450 ARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIH 529 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSC
T ss_pred HHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhcc
Confidence 3456678899999988887766521 2223222 222221 1 11 1233333332111 11
Q ss_pred CCCHHhHHHHHH-----HHHccCChHHHHHHHHHH
Q 012800 420 RILKSAQKAVVD-----GLRHSGCRREAKKIQSKI 449 (456)
Q Consensus 420 ~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~ 449 (456)
..+..|+..|+. -+.+.|+++.|...++++
T Consensus 530 ~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 530 VKNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 113345555443 247899999999988876
No 348
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=26.13 E-value=1.7e+02 Score=20.39 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 012800 325 HTILIDGLCKAGNIKGARLHLEYMN 349 (456)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~ 349 (456)
...++.-|...|+.++|...++++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4556666777777777777777764
No 349
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=26.11 E-value=64 Score=23.82 Aligned_cols=25 Identities=8% Similarity=0.102 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHH
Q 012800 10 LNICVCTFCKANRLEKAEAIIIDGI 34 (456)
Q Consensus 10 ~~~l~~~~~~~g~~~~A~~~~~~~~ 34 (456)
...++.-|...|+.++|...++++.
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4567788889999999999999874
No 350
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=26.03 E-value=3.4e+02 Score=23.97 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=33.3
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCC-----hHHHHHHHHHHHhCCCC
Q 012800 124 QLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRY-----TDNALRMFRGLQKHGFV 179 (456)
Q Consensus 124 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 179 (456)
+.++.+.|+..+.+|.+.|..|....-..+..+.-.-|. ..-|...++.....|.+
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~p 327 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPA 327 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCc
Confidence 456778888888888887755544444444444444443 23455566666666654
No 351
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=25.85 E-value=2.9e+02 Score=22.96 Aligned_cols=69 Identities=20% Similarity=0.146 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHH
Q 012800 290 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN--IKGARLHLEYMNKIGFDSNLEA 359 (456)
Q Consensus 290 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 359 (456)
...++.-|...|+.++|...++++...... ...+...+..++-+.++ .+....++..+.+.|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 456677788888888888888887531111 12233333344433322 3455666666666554444333
No 352
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=25.71 E-value=2.2e+02 Score=21.67 Aligned_cols=19 Identities=16% Similarity=0.557 Sum_probs=12.5
Q ss_pred HHHHHhhCcHHHHHHHHHH
Q 012800 14 VCTFCKANRLEKAEAIIID 32 (456)
Q Consensus 14 ~~~~~~~g~~~~A~~~~~~ 32 (456)
+...++.|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4555667777777766654
No 353
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=24.94 E-value=69 Score=22.09 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 012800 80 YNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANR 133 (456)
Q Consensus 80 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 133 (456)
|.-.|......++.+-|.++++-..+.| +...|.+.+-.|...=+++-+++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 4445555666666666666666666654 55556566555555555555544
No 354
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=23.60 E-value=2.5e+02 Score=21.42 Aligned_cols=19 Identities=11% Similarity=-0.169 Sum_probs=11.8
Q ss_pred HHHHHccCChhHHHHHHHH
Q 012800 49 IDAYCQFVSFDAGYTILNR 67 (456)
Q Consensus 49 ~~~~~~~~~~~~a~~~~~~ 67 (456)
+...++.|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4445566777776666654
No 355
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.42 E-value=2.1e+02 Score=24.11 Aligned_cols=25 Identities=8% Similarity=0.088 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 012800 150 FNIMLNGLCKNRYTDNALRMFRGLQ 174 (456)
Q Consensus 150 ~~~l~~~~~~~~~~~~a~~~~~~~~ 174 (456)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567777888888888888877764
No 356
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=23.15 E-value=2.9e+02 Score=22.06 Aligned_cols=57 Identities=12% Similarity=0.157 Sum_probs=28.5
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc-cCChHHHHHHHHHHH
Q 012800 394 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH-SGCRREAKKIQSKIR 450 (456)
Q Consensus 394 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~ 450 (456)
++...-+.+++++..+..+++.+.+...+..-.+.+.-+|-. .|....+++++..+.
T Consensus 10 ~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissie 67 (248)
T 3uzd_A 10 KARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIE 67 (248)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 344445566666666666666655555555544444444421 333344444444443
No 357
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=22.53 E-value=1.5e+02 Score=23.25 Aligned_cols=27 Identities=4% Similarity=-0.154 Sum_probs=15.3
Q ss_pred HHHHHhhCcHHHHHHHHHHHHhcCCCC
Q 012800 14 VCTFCKANRLEKAEAIIIDGIRLGVLP 40 (456)
Q Consensus 14 ~~~~~~~g~~~~A~~~~~~~~~~~~~~ 40 (456)
+...++.|+.+....+++.+...|..+
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i 32 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYL 32 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 334456677666666666555555433
No 358
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.41 E-value=1.6e+02 Score=20.25 Aligned_cols=42 Identities=10% Similarity=0.074 Sum_probs=19.7
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012800 64 ILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLE 105 (456)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 105 (456)
+|+.+....+.|++..--.-+..+...++++.|.++.-.+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444433333333333344455566666666655554
No 359
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=22.06 E-value=3.6e+02 Score=22.72 Aligned_cols=24 Identities=8% Similarity=0.127 Sum_probs=14.1
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHH
Q 012800 81 NSLIAGATRNSLLSCSLDLLDEML 104 (456)
Q Consensus 81 ~~l~~~~~~~~~~~~a~~~~~~~~ 104 (456)
..++.-|...|+.++|...++++.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC
Confidence 445555666666666666665553
No 360
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=21.89 E-value=3e+02 Score=21.77 Aligned_cols=59 Identities=14% Similarity=0.194 Sum_probs=33.4
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc-cCChHHHHHHHHHHHh
Q 012800 393 SMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH-SGCRREAKKIQSKIRM 451 (456)
Q Consensus 393 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~ 451 (456)
.++...-+.+++++..+..+++.+.+...+..-.+.+..+|-. .|....+++++..+.+
T Consensus 13 ~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiissieq 72 (236)
T 3iqu_A 13 QKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQ 72 (236)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 3445555667777777777777666666665555555444422 3444555555555443
No 361
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=21.61 E-value=1.7e+02 Score=19.10 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHc
Q 012800 373 IDHAINVFESMEVKDSFTYSSMVHNLCK 400 (456)
Q Consensus 373 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 400 (456)
.+.|.++++.+....+.+|..++.++..
T Consensus 53 ~~~ar~Lld~L~~rG~~Af~~F~~aL~e 80 (97)
T 3ygs_P 53 RDQARQLIIDLETRGSQALPLFISCLED 80 (97)
T ss_dssp HHHHHHHHHHHTTSCTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 4444444444444444444444444433
No 362
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=21.57 E-value=3.5e+02 Score=22.44 Aligned_cols=69 Identities=13% Similarity=0.200 Sum_probs=43.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCcCHHh
Q 012800 255 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK--LEAAYLLLDEMEKQGFECDKYT 324 (456)
Q Consensus 255 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 324 (456)
...++.-|...|+.++|...++++..-... ...+...+..+.-+.++ .+....++..+.+.|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 456788888999999999999998632111 22333344444443333 4556788888887766544433
No 363
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=21.25 E-value=2.9e+02 Score=22.22 Aligned_cols=35 Identities=9% Similarity=0.026 Sum_probs=16.8
Q ss_pred HHHHHccCChhHHHHHHHHHHHcC--CCCCHHhHHHH
Q 012800 395 VHNLCKAKRLPSASKLLLSCLKSG--VRILKSAQKAV 429 (456)
Q Consensus 395 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l 429 (456)
+...-+.+++++..+.++++.+.+ ...+..-.+.+
T Consensus 15 AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLL 51 (260)
T 1o9d_A 15 AKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLL 51 (260)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHH
Confidence 334444555555555555555544 34444433333
No 364
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=20.55 E-value=1.2e+02 Score=16.84 Aligned_cols=19 Identities=5% Similarity=0.148 Sum_probs=11.5
Q ss_pred CcHHHHHHHHHHHHhcCCC
Q 012800 21 NRLEKAEAIIIDGIRLGVL 39 (456)
Q Consensus 21 g~~~~A~~~~~~~~~~~~~ 39 (456)
.+...|+++++.+.+.|--
T Consensus 7 RDv~RaiELle~lq~sgev 25 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEV 25 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSS
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 4556666666666665533
No 365
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=20.43 E-value=2e+02 Score=21.42 Aligned_cols=44 Identities=18% Similarity=0.115 Sum_probs=19.6
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 012800 44 TYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGAT 88 (456)
Q Consensus 44 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 88 (456)
.++.++..++...-.+.++-.+.+....| ..+..+|---.+.++
T Consensus 113 l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~La 156 (174)
T 2p22_A 113 GLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELA 156 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 33444444444444445555555444444 233444433333333
No 366
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=20.36 E-value=1.8e+02 Score=22.03 Aligned_cols=70 Identities=11% Similarity=0.027 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccCChhhHHHHHHHHHccCChhHHHHHHHH
Q 012800 337 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLS 413 (456)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 413 (456)
+......+.+.+... .-+....-.++.++...|++++|.++..++..... .... ..+.+++.-|.-++.+
T Consensus 14 ~l~~~~~~~~~LR~q--rHdf~NkLqvI~GLlql~~ydea~~yI~~~~~~~q----~~~~-~~~i~~P~la~lLl~K 83 (192)
T 1ixm_A 14 DTALTNELIHLLGHS--RHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVIDAK----HESK-LSNLKTPHLAFDFLTF 83 (192)
T ss_dssp CHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----HHHH-HHTTTCHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----HHHH-HHhCCCHHHHHHHHHH
Confidence 334445555554433 11223334556677888888888888877665411 1111 3445555554444444
Done!