Query 012803
Match_columns 456
No_of_seqs 437 out of 1344
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 16:32:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012803.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012803hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 8.9E-46 3E-50 359.6 34.2 416 34-455 7-481 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 2.3E-40 7.9E-45 318.0 15.9 383 34-435 23-432 (451)
3 3o7q_A L-fucose-proton symport 100.0 2.2E-38 7.5E-43 303.0 21.6 345 44-422 31-418 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 2.4E-34 8.3E-39 279.1 26.2 376 68-443 48-478 (491)
5 2gfp_A EMRD, multidrug resista 100.0 1.6E-35 5.5E-40 277.2 7.0 348 43-428 4-367 (375)
6 2xut_A Proton/peptide symporte 100.0 7.7E-30 2.6E-34 249.5 15.9 381 64-446 38-512 (524)
7 2cfq_A Lactose permease; trans 100.0 3.3E-31 1.1E-35 251.1 3.9 359 59-443 27-406 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 1.2E-13 4E-18 132.0 10.5 150 60-209 273-433 (451)
9 3o7q_A L-fucose-proton symport 99.3 4.9E-12 1.7E-16 120.2 10.1 142 65-209 286-432 (438)
10 2cfq_A Lactose permease; trans 99.3 1.6E-12 5.6E-17 122.6 5.2 142 72-213 257-404 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.2 1E-11 3.4E-16 120.0 7.7 165 269-433 14-193 (491)
12 2gfp_A EMRD, multidrug resista 99.2 3.9E-11 1.3E-15 111.5 9.0 152 290-441 18-179 (375)
13 2xut_A Proton/peptide symporte 99.2 1E-10 3.4E-15 113.9 11.9 165 268-432 12-194 (524)
14 4gc0_A D-xylose-proton symport 99.1 2.1E-10 7.2E-15 110.6 12.1 152 61-213 299-467 (491)
15 2g9p_A Antimicrobial peptide l 64.2 2.4 8.1E-05 20.0 0.8 14 93-106 2-15 (26)
16 3mkt_A Multi antimicrobial ext 52.7 1.4E+02 0.0047 27.3 17.2 21 153-173 150-170 (460)
17 4dve_A Biotin transporter BIOY 25.1 1.5E+02 0.0051 23.7 5.8 25 80-104 99-123 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=8.9e-46 Score=359.61 Aligned_cols=416 Identities=29% Similarity=0.535 Sum_probs=328.7
Q ss_pred hHHHHHHHHHHHhhhhhhccccceecccccccccccCC--------ChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchH
Q 012803 34 TSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGL--------SVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRG 105 (456)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~ 105 (456)
.+..+.++++.+++.+.+|+|.++++..+|.+.++++. +..+.|++.+++.+|..++++++|+++||+|||+
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~ 86 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD 86 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 45677777888899999999999999999988887743 3456889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH------------------HhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHH
Q 012803 106 TMGFSDIVCIIGWVIIV------------------FSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTV 167 (456)
Q Consensus 106 ~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 167 (456)
++.++.+++.+++++++ +++|+++++++|+++|++.|...+...++++|+.|+++|++..++
T Consensus 87 ~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~ 166 (491)
T 4gc0_A 87 SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh
Confidence 99999999999999999 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccc------------cchHHHHHhHHHHHHHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCC
Q 012803 168 HQLMICIGVSMTYLIGAFL------------NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGA 235 (456)
Q Consensus 168 ~~~~~~~G~~~~~~l~~~l------------~w~~~f~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 235 (456)
.+.+..+|.++++.++... +||+.+.+..+..++..+..+++||+|+|+..+++.+++.+..++....
T Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~ 246 (491)
T 4gc0_A 167 NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN 246 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence 9999999999988876443 5888888888888888888899999999999999999999888776543
Q ss_pred CCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCch---HHHHH
Q 012803 236 DADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGMIA 312 (456)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 312 (456)
+...++..+... ..+. ..+.......+ ..+..........+.+......+..|.+...+..+.... .....
T Consensus 247 ~~~~~~~~~~~~-~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (491)
T 4gc0_A 247 TLATQAVQEIKH-SLDH--GRKTGGRLLMF---GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTII 320 (491)
T ss_dssp HHHHHHHHHHHH-HHHH--HHHHTTHHHHS---CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred chhHHHHHHHHH-HHHh--hhhhhhHHHHh---cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHH
Confidence 211111111111 1111 11111111112 223344455555566666777888888888877766544 45566
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH-----------HHHHHHHHhcccccccceeeecccCC
Q 012803 313 MVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF-----------LFQVYTGSFSLGMGGIPWVIMSEVFP 381 (456)
Q Consensus 313 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (456)
.++..+++.++.+++.||+|||+.+..+...++++.+.+.... ...++...+..+.+++.+.+.+|++|
T Consensus 321 ~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fP 400 (491)
T 4gc0_A 321 VGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFP 400 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCC
Confidence 7788899999999999999999999988888877776655431 11233445556667888899999999
Q ss_pred ccchhhHhHHHHHHHHHHHHHHHHHHHHHHh-------hhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHhhcCC
Q 012803 382 INMKGSAGSLVTLVSWLGSWIISFTFNFLMK-------WSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASMNP 454 (456)
Q Consensus 382 ~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (456)
++.|+++.|+.+..+++++++++.+.+.+.+ .+....++++++++++..++.++++||+|+++.||+|+.+|+
T Consensus 401 t~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~ 480 (491)
T 4gc0_A 401 NAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEP 480 (491)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCC
Confidence 9999999999999999999999998887654 223345778888888888888899999999999999988775
Q ss_pred C
Q 012803 455 F 455 (456)
Q Consensus 455 ~ 455 (456)
+
T Consensus 481 ~ 481 (491)
T 4gc0_A 481 E 481 (491)
T ss_dssp -
T ss_pred C
Confidence 4
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=2.3e-40 Score=317.99 Aligned_cols=383 Identities=15% Similarity=0.122 Sum_probs=282.4
Q ss_pred hHHHHHHHHHHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHH
Q 012803 34 TSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIV 113 (456)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~ 113 (456)
.+..+......+++.+..+.+.....+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 344455566666677777777777888899999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH----hchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc---
Q 012803 114 CIIGWVIIVF----SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL--- 186 (456)
Q Consensus 114 ~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l--- 186 (456)
.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.+++|.+++.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999998774
Q ss_pred -c-chHHHHHhHHHHHHHH-HHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHH
Q 012803 187 -N-WRILALIGTIPCLVQL-IGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILE 263 (456)
Q Consensus 187 -~-w~~~f~~~~~~~l~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (456)
+ ||+.|++.+++.++.. +..+++||+|++...+++.+. ..+.+++ .++..++....++...++
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~---~~~~~~~~~~~~~~~~~~ 247 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------KNDYPDD---YNEKAEQELTAKQIFMQY 247 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------CCC----------------CCTHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-----------ccccccc---chhhhhcccccccchHHH
Confidence 7 9999999888877644 445678888754221111100 0000000 000001111112222466
Q ss_pred HhhhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHH-cCCCc---hHHHHHHHHHHHHHHHHHHHHHhhc--CCcchh
Q 012803 264 LFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFIS-AGFSG---SIGMIAMVVIQIPMTLLGVLLMDKS--GRRPLL 337 (456)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~ 337 (456)
.++++.++...+..++..+.... ...+.+.++++ .+.+. +.......++.+++.++.+++.||+ ++|+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 323 (451)
T 1pw4_A 248 VLPNKLLWYIAIANVFVYLLRYG----ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT 323 (451)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHH----HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH
Confidence 77778777777766666555443 34444444444 34443 3777788889999999999999999 998887
Q ss_pred hhhhHHHH-HHHHHHHHH--------HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHH-HHHHHHHHH
Q 012803 338 LVSAAGTC-LGCLLAALS--------FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWL-GSWIISFTF 407 (456)
Q Consensus 338 ~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~i~~~~~ 407 (456)
..+..+.. ++.+++... .....+.+.+..+..+....+..|..|++.|+++.|+.+...++ |..++|.+.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~ 403 (451)
T 1pw4_A 324 GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 403 (451)
T ss_dssp HHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77766655 444443321 11223334434444566678899999999999999999999999 999999999
Q ss_pred HHHHhh-hhhhHHHHHHHHHHHHHHHHHh
Q 012803 408 NFLMKW-SSTGTFFAFSAICSLTVLFVAK 435 (456)
Q Consensus 408 g~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 435 (456)
|.+.+. +....++..+++.++..++...
T Consensus 404 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 404 GYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999994 4444555555555555444443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=2.2e-38 Score=303.05 Aligned_cols=345 Identities=11% Similarity=0.063 Sum_probs=264.2
Q ss_pred HHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHH--
Q 012803 44 AVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII-- 121 (456)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~-- 121 (456)
+++..+..+.+.....+.+|.+.+++|++..+.|++.+.+.+++.++++++|+++||+|||++++.+.++.+++.+++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 110 (438)
T 3o7q_A 31 LCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWP 110 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHh
Confidence 334445555666677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc-----c--------
Q 012803 122 -VFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----N-------- 187 (456)
Q Consensus 122 -~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-----~-------- 187 (456)
+++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|..++|.+++.+ +
T Consensus 111 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~ 190 (438)
T 3o7q_A 111 AAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLD 190 (438)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHH
T ss_pred ccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 88899999999999999999999999999999999999999999999999999999999998776 2
Q ss_pred -----------------chHHHHHhHHHHHHHHHHhhc--cCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHH
Q 012803 188 -----------------WRILALIGTIPCLVQLIGLCF--IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIRE 248 (456)
Q Consensus 188 -----------------w~~~f~~~~~~~l~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (456)
||+.|++.+.+.++..+..++ .||+++. +++++
T Consensus 191 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~------------------------- 242 (438)
T 3o7q_A 191 KMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHSDA------------------------- 242 (438)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CCCCS-------------------------
T ss_pred cCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---ccccc-------------------------
Confidence 999998877766654444333 4554321 00000
Q ss_pred HHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHh-HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHH
Q 012803 249 YTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFY-ASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLL 327 (456)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 327 (456)
++++.+.+++++++++.++...+..++..........+.+.| ..+.++......+.......++.+++.++.+++
T Consensus 243 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 318 (438)
T 3o7q_A 243 ----KQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWL 318 (438)
T ss_dssp ----STTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011122345677888888877777666666554444444444 333222222223477777888999999999999
Q ss_pred HhhcCCcchhhhhhHHHHHHHHHHHHH-----HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHH
Q 012803 328 MDKSGRRPLLLVSAAGTCLGCLLAALS-----FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWI 402 (456)
Q Consensus 328 ~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i 402 (456)
+||++||+.+..+.++.+++.+++... .....+.+++.....+..+++..|.+|++ ++++.++.. ...+|+.+
T Consensus 319 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~ 396 (438)
T 3o7q_A 319 ISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGI 396 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHH
Confidence 999999999988888877776665542 12224444555555677888888999866 888888877 67799999
Q ss_pred HHHHHHHHHhh-h-hhhHHHHH
Q 012803 403 ISFTFNFLMKW-S-STGTFFAF 422 (456)
Q Consensus 403 ~~~~~g~l~~~-~-~~~~~~~~ 422 (456)
+|.+.|++.|. + ....+++.
T Consensus 397 ~~~~~g~l~~~~g~~~~~~~~~ 418 (438)
T 3o7q_A 397 VTPVMGFVSDAAGNIPTAELIP 418 (438)
T ss_dssp HHHHHHHHHHHHTSSGGGGHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHH
Confidence 99999999995 3 34444443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=2.4e-34 Score=279.09 Aligned_cols=376 Identities=15% Similarity=0.057 Sum_probs=252.5
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcc-cCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhccccc
Q 012803 68 DLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY-IGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSY 146 (456)
Q Consensus 68 ~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 146 (456)
|+|.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+...+
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 127 (491)
T 4aps_A 48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKP 127 (491)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccc
Confidence 399999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred ccceeeeeccCCCC--chhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhhcc-CCCh----hH
Q 012803 147 VVPVYIAEITPKNL--RGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFI-PESP----RW 215 (456)
Q Consensus 147 ~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~~~-~~~p----~~ 215 (456)
...+++.|++|+++ |+.+.++++.+.++|..++|.+++.+ |||+.|++.++..++..+..++. ++.. +.
T Consensus 128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (491)
T 4aps_A 128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLR 207 (491)
T ss_dssp HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSC
T ss_pred hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccC
Confidence 99999999999998 67788889999999999999998876 89999999877766655444322 2211 00
Q ss_pred HHhcCCcHHHHHHHHH---------------HhCCCCCchHHHHHHHHH--------HHHHhhcChhhHHHHhhhhhhhH
Q 012803 216 LAKTGKGIESEAALQR---------------LRGADADISEEAAEIREY--------TETLERLSEGGILELFQRKYAHS 272 (456)
Q Consensus 216 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 272 (456)
..++.+.++..+..++ ......+.++........ .....++++....+..+......
T Consensus 208 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (491)
T 4aps_A 208 PTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIP 287 (491)
T ss_dssp CSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHH
T ss_pred CCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 0011111222221111 001111111110000000 00000000000111111122333
Q ss_pred HHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhh-----hhhHHHHHH
Q 012803 273 LIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLL-----VSAAGTCLG 347 (456)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-----~~~~~~~~~ 347 (456)
......+.+.........++.|.....+......+.......++.+++.++.+++.||++||+... .+..+.+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~ 367 (491)
T 4aps_A 288 LFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLS 367 (491)
T ss_dssp HHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence 444444445554545555666665544444345667778888888999999999999999987655 566666666
Q ss_pred HHHHHHH---------------HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 348 CLLAALS---------------FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 348 ~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
++++... .....+.+.......+..+.++.|..|++.|+++.|+.+...++|..++|.+.+.+.+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 368 FLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp HTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5554432 1112333444444467778899999999999999999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 012803 413 WSSTGTFFAFSAICSLTVLFVAKLVPETKGR 443 (456)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (456)
.++...+...++++++..++.+...++.+++
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 448 KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777666665555443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=1.6e-35 Score=277.19 Aligned_cols=348 Identities=15% Similarity=0.066 Sum_probs=270.2
Q ss_pred HHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHH
Q 012803 43 VAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV 122 (456)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~ 122 (456)
+.++..+....+.+...+.+|.+.+++|.++++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 34445555566677778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHH
Q 012803 123 FSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIP 198 (456)
Q Consensus 123 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~ 198 (456)
++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+.++|..++|.+++.+ +||+.|++.++.
T Consensus 84 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 84 TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL 163 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999877 899999998888
Q ss_pred HHHHHH-HhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHH
Q 012803 199 CLVQLI-GLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGV 277 (456)
Q Consensus 199 ~l~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (456)
.++..+ ..+++||++++.. + +++.+.++++++++|.++...+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~---~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 208 (375)
T 2gfp_A 164 CAGVTFSMARWMPETRPVDA---P--------------------------------RTRLLTSYKTLFGNSGFNCYLLML 208 (375)
T ss_dssp HHHHHCCCCCSSCCCSTTTC---C--------------------------------CCCTTTCSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccCCCCc---c--------------------------------cccHHHHHHHHhcCcchHHHHHHH
Confidence 777655 4466787753210 0 011233455677888888877777
Q ss_pred HHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHH-HHHHHH--HHHH-
Q 012803 278 GLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAG-TCLGCL--LAAL- 353 (456)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~~--~~~~- 353 (456)
++............+.|..+..+.+....+.......++.+++.++.+++.||++++. ..+... ...+.. ....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~ 286 (375)
T 2gfp_A 209 IGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWF 286 (375)
T ss_dssp HHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhh
Confidence 7777766666677777777766655555567788888899999999999999988722 222222 111111 1111
Q ss_pred ---H----HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 012803 354 ---S----FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAIC 426 (456)
Q Consensus 354 ---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~ 426 (456)
. .....+.++......+...++..|..| ++|+++.|+.+...++|..++|.+.|.+.+.+++...+...++.
T Consensus 287 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~ 365 (375)
T 2gfp_A 287 GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMG 365 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 0 112233344444456778888999998 89999999999999999999999999998866555555544443
Q ss_pred HH
Q 012803 427 SL 428 (456)
Q Consensus 427 ~~ 428 (456)
++
T Consensus 366 ~~ 367 (375)
T 2gfp_A 366 LL 367 (375)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=7.7e-30 Score=249.47 Aligned_cols=381 Identities=12% Similarity=0.037 Sum_probs=219.7
Q ss_pred ccccccC------CChhhHHHHHHHHHHHHHHHHHHHhhhhccc-CchHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHH
Q 012803 64 GITNDLG------LSVAEYSLFGSILTIGAMIGAIMSGKIADYI-GRRGTMGFSDIVCIIGWVIIVFSK-AAWWLDLGRL 135 (456)
Q Consensus 64 ~i~~~~~------~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~ 135 (456)
.+.+++| ++..+.+++.+.+.++..++++++|+++||+ |||+++..+.++.+++.++.++++ +++.+++.|+
T Consensus 38 ~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (524)
T 2xut_A 38 FLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLF 117 (524)
T ss_dssp HHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4677888 9999999999999999999999999999999 999999999999999999999999 9999999999
Q ss_pred HHHhhhcccccccceeeeeccCCCCchhHHHH---HHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhhc
Q 012803 136 LVGYGMGLLSYVVPVYIAEITPKNLRGGFTTV---HQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCF 208 (456)
Q Consensus 136 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~~ 208 (456)
+.|++.+...+...+++.|++|+++|+++.+. .+.+.++|..++|.+++.+ +||+.|++.++..++..+..++
T Consensus 118 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 118 LIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999876666 8899999999999998876 8999999988887766555543
Q ss_pred c-CCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHH---------------------------HHHHhhcChhh
Q 012803 209 I-PESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREY---------------------------TETLERLSEGG 260 (456)
Q Consensus 209 ~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~ 260 (456)
. ++.++...++++..+..+......+......+........ ...++ ..+.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 276 (524)
T 2xut_A 198 GRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGF-VGAGA 276 (524)
T ss_dssp SSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHH-HHTGG
T ss_pred hcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcc-cccch
Confidence 3 2211000000000000000000000000000000000000 00000 00011
Q ss_pred HHHH-----------hhh-hhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCC----CchHHHHHHHHHHHHHHHHH
Q 012803 261 ILEL-----------FQR-KYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGF----SGSIGMIAMVVIQIPMTLLG 324 (456)
Q Consensus 261 ~~~~-----------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 324 (456)
+.++ .++ +.......................+.+. ......+. ..+.......++.+++..+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (524)
T 2xut_A 277 SLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWI-LQANDMVKPQWFEPAMMQALNPLLVMLLIPFN 355 (524)
T ss_dssp GTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHH-HHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGT
T ss_pred hhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhH-HhHHhcCCCeeecHHHHHHHHHHHHHHhHHHH
Confidence 1000 011 1111111111111111111111122222 22222222 23444444444555555555
Q ss_pred HHHH----hhcCCc----chhhhhhHHHHHHHHHHHH---------------HHHHHHHHHHhcccccccceeeecccCC
Q 012803 325 VLLM----DKSGRR----PLLLVSAAGTCLGCLLAAL---------------SFLFQVYTGSFSLGMGGIPWVIMSEVFP 381 (456)
Q Consensus 325 g~l~----d~~g~~----~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (456)
+++. ||.++| +.+..+.++.+++++++.. .....++.+++.....+..+++..|..|
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p 435 (524)
T 2xut_A 356 NFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAP 435 (524)
T ss_dssp TTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCC
T ss_pred HhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 5443 444332 3445566666665554432 1112233444444456777889999999
Q ss_pred ccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhh------------hhHHHHHHHHHHHHHHHHHhcccCCCCCCHH
Q 012803 382 INMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSS------------TGTFFAFSAICSLTVLFVAKLVPETKGRTLE 446 (456)
Q Consensus 382 ~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
++.||+++|+.+...++|+.++|.+.|.+.+... ...+++.++++++..++.++..++.++++.+
T Consensus 436 ~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (524)
T 2xut_A 436 KAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQDHY 512 (524)
T ss_dssp TTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 9999999999999999999999999999887311 1125555555555555555555554444333
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.96 E-value=3.3e-31 Score=251.07 Aligned_cols=359 Identities=11% Similarity=0.069 Sum_probs=224.2
Q ss_pred cccccc-cccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHH---HHHHhchh-hHHHHH
Q 012803 59 SPAQSG-ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWV---IIVFSKAA-WWLDLG 133 (456)
Q Consensus 59 ~~~~~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~---~~~~~~~~-~~l~~~ 133 (456)
.+.+|. +++++|+++.+.|++.+.+.+++.++++++|+++||+|||++++++..+++++.. ...+++.. ..++..
T Consensus 27 ~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (417)
T 2cfq_A 27 FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVG 106 (417)
T ss_dssp TTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556664 5677999999999999999999999999999999999999999998887765322 12222221 123455
Q ss_pred HHHHHhhhcccccccceeeeeccCC--CCchhHHHHHHHHHHHHHHHHHHHhccc---cchHHHHHhHHHHHHHHHHhhc
Q 012803 134 RLLVGYGMGLLSYVVPVYIAEITPK--NLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIGLCF 208 (456)
Q Consensus 134 r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~l~~~l---~w~~~f~~~~~~~l~~~~~~~~ 208 (456)
+++.|++.+...+.....+.++.++ ++|+...+....+.++|..++|.+++.+ +||+.|++.++..++..+..++
T Consensus 107 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~ 186 (417)
T 2cfq_A 107 SIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFF 186 (417)
T ss_dssp HHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Confidence 6666666555444444444455433 3456667777777788888888888776 7999999877776555555555
Q ss_pred cCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccc
Q 012803 209 IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGV 288 (456)
Q Consensus 209 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (456)
.+|+++. +.+.++.. +.+ .++....+.+++++++.++...+..+.....+....
T Consensus 187 ~~~~~~~---~~~~~~~~-------~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (417)
T 2cfq_A 187 AKTDAPS---SATVANAV-------GAN----------------HSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFD 240 (417)
T ss_dssp SCCCCSC---SSCSSSSS-------SSC----------------CCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccc---cccccccc-------ccc----------------cccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHH
Confidence 5443311 00000000 000 000111234556777777665554333333322223
Q ss_pred hhhHHhHHHHHHHc---CCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH--H-H---HHH
Q 012803 289 NGIAFYASSIFISA---GFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS--F-L---FQV 359 (456)
Q Consensus 289 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--~-~---~~~ 359 (456)
.+.+.|....++.. ....+.......++.+++.++.++++||+|||+.+..+..+.+++.+.+... . . ...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (417)
T 2cfq_A 241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKT 320 (417)
T ss_dssp HHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTT
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 34555554332211 1112355566667888899999999999999998887777776665544321 0 0 111
Q ss_pred HHHHhcccccccceeeecccCCccchhhHhHHH-HHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHhcc
Q 012803 360 YTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLV-TLVSWLGSWIISFTFNFLMKW-SSTGTFFAFSAICSLTVLFVAKLV 437 (456)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 437 (456)
+.+.......+..+.++.|.+|++.|+++.++. +...++|++++|.+.|++.+. +....+...+++.++..++.+...
T Consensus 321 l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 321 LHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 112222222334567889999999999999994 888889999999999999984 444455555655566555555555
Q ss_pred cCCCCC
Q 012803 438 PETKGR 443 (456)
Q Consensus 438 ~~~~~~ 443 (456)
+++++.
T Consensus 401 ~~~~~~ 406 (417)
T 2cfq_A 401 SGPGPL 406 (417)
T ss_dssp CCSCTT
T ss_pred cCCCch
Confidence 554443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.47 E-value=1.2e-13 Score=131.98 Aligned_cols=150 Identities=13% Similarity=0.171 Sum_probs=127.1
Q ss_pred ccccccccc-cCCChhhHHHHHHHHHHHHHHHHHHHhhhhccc--CchHHHHHHHHHHH-HHHHHHHHh--chhhHHHHH
Q 012803 60 PAQSGITND-LGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI--GRRGTMGFSDIVCI-IGWVIIVFS--KAAWWLDLG 133 (456)
Q Consensus 60 ~~~~~i~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~--G~r~~~~~~~~~~~-~~~~~~~~~--~~~~~l~~~ 133 (456)
...|.+.++ +|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+.+.+.+.
T Consensus 273 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (451)
T 1pw4_A 273 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMIC 352 (451)
T ss_dssp HHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHH
Confidence 344444444 899999999999999999999999999999999 99999988877776 666666665 367778888
Q ss_pred HHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHH-HHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhhc
Q 012803 134 RLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICI-GVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCF 208 (456)
Q Consensus 134 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~~ 208 (456)
.++.|++.+...+...+++.|.+|+++|+++.++.+....+ |..++|.+.+.+ ||+..|++.+++.+++.+..++
T Consensus 353 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 353 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 89999988888888889999999999999999999999999 999999988776 8999999988887776665554
Q ss_pred c
Q 012803 209 I 209 (456)
Q Consensus 209 ~ 209 (456)
+
T Consensus 433 ~ 433 (451)
T 1pw4_A 433 V 433 (451)
T ss_dssp H
T ss_pred H
Confidence 3
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.31 E-value=4.9e-12 Score=120.24 Aligned_cols=142 Identities=12% Similarity=0.012 Sum_probs=117.6
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhccc
Q 012803 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144 (456)
Q Consensus 65 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 144 (456)
+.+.+|.+..+.++..+.+.++..++.++.|+++||+|||+++..+.++..++.++..+.++.+.++.. ++.|++.+..
T Consensus 286 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~ 364 (438)
T 3o7q_A 286 VEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQ 364 (438)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTH
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHH
Confidence 345569999999999999999999999999999999999999999999999999988888887765544 8889999999
Q ss_pred ccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----c-chHHHHHhHHHHHHHHHHhhcc
Q 012803 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----N-WRILALIGTIPCLVQLIGLCFI 209 (456)
Q Consensus 145 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~-w~~~f~~~~~~~l~~~~~~~~~ 209 (456)
.+...++..|.+|++ ++.+.++.. ...+|..++|.+.+.+ | ++..|++.++..++..+..+..
T Consensus 365 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T 3o7q_A 365 YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARFR 432 (438)
T ss_dssp HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999989999866 888888777 5568899999888776 6 8888887665555444443433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.29 E-value=1.6e-12 Score=122.60 Aligned_cols=142 Identities=8% Similarity=0.035 Sum_probs=117.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhccccccccee
Q 012803 72 SVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVY 151 (456)
Q Consensus 72 ~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 151 (456)
+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888889999999999999999999999999998888887777778888888888888888777666677789
Q ss_pred eeeccCCCCchhHHHH-HHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHh-hccCCCh
Q 012803 152 IAEITPKNLRGGFTTV-HQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CFIPESP 213 (456)
Q Consensus 152 i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~-~~~~~~p 213 (456)
+.|.+|++.|+++.+. ++....+|..++|.+++.+ |++..|.+.+++.+++.+.. ++.||++
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999998 4778889999999988876 77888888888877766554 4456544
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.23 E-value=1e-11 Score=119.98 Aligned_cols=165 Identities=12% Similarity=0.053 Sum_probs=115.5
Q ss_pred hhhHHHHHHHHHHHHHhccchhhHHhHHHHH--HHcCCC---chHHHHHHHHHHHHHHHHHHHHHhh-cCCcchhhhhhH
Q 012803 269 YAHSLIVGVGLMVLQQFGGVNGIAFYASSIF--ISAGFS---GSIGMIAMVVIQIPMTLLGVLLMDK-SGRRPLLLVSAA 342 (456)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~ 342 (456)
..+......++..+..+.....++.|+.... ++.+.+ .++......++..++.++.|+++|| +|||+.+..+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~ 93 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGV 93 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 3444444444444444444455555555431 113433 3477888889999999999999999 899999999998
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHhcccccccceeeecccCCccc--hhhHhHHHHHHHHHHHHHHHHHHHHHHh-h
Q 012803 343 GTCLGCLLAALS------FLFQVYTGSFSLGMGGIPWVIMSEVFPINM--KGSAGSLVTLVSWLGSWIISFTFNFLMK-W 413 (456)
Q Consensus 343 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~i~~~~~g~l~~-~ 413 (456)
+.+++.+++... ....++.+.+.....+...+++.|.+|+++ |+.+.++.+....+|..++|.+.+.+.+ .
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 173 (491)
T 4aps_A 94 LIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA 173 (491)
T ss_dssp HHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888888776643 223344555555567788899999999888 7888898999999999999999999988 4
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 012803 414 SSTGTFFAFSAICSLTVLFV 433 (456)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~ 433 (456)
++...+++.+...++..++.
T Consensus 174 g~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 174 GYHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45555555544444444333
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.19 E-value=3.9e-11 Score=111.51 Aligned_cols=152 Identities=16% Similarity=0.134 Sum_probs=111.1
Q ss_pred hhHHhHHHHHHHcCCCch---HHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHHH------HHHH
Q 012803 290 GIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFL------FQVY 360 (456)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 360 (456)
......+.+.++.+.+.. .......++..++.++.|+++||+|||+.+..+..+.+++.+....... ..++
T Consensus 18 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 97 (375)
T 2gfp_A 18 IYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAM 97 (375)
T ss_dssp HHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 333445555555555543 6777888899999999999999999999999999888888877665422 1233
Q ss_pred HHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHhcccC
Q 012803 361 TGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW-SSTGTFFAFSAICSLTVLFVAKLVPE 439 (456)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (456)
.+.......+...+++.|..|+++|+++.++.+....+|..++|.+.+.+.+. ++...+++.+...++..++.....||
T Consensus 98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (375)
T 2gfp_A 98 QGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPE 177 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCC
T ss_pred HHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 34444445677788899999999999999999999999999999999999884 44445555555555544434455555
Q ss_pred CC
Q 012803 440 TK 441 (456)
Q Consensus 440 ~~ 441 (456)
++
T Consensus 178 ~~ 179 (375)
T 2gfp_A 178 TR 179 (375)
T ss_dssp CS
T ss_pred cC
Confidence 43
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.18 E-value=1e-10 Score=113.92 Aligned_cols=165 Identities=16% Similarity=0.154 Sum_probs=115.8
Q ss_pred hhhhHHHHHHHHHHHHHhccchhhHHhHHHHHH------HcCCCchHHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhhh
Q 012803 268 KYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFI------SAGFSGSIGMIAMVVIQIPMTLLGVLLMDKS-GRRPLLLVS 340 (456)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~ 340 (456)
+.++......++..+..+.....++.|+...++ .+....+.......++.+++.++.|+++||+ |||+.+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~ 91 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWL 91 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 444555555555555554445555555554444 3444456888888999999999999999999 999999998
Q ss_pred hHHHHHHHHHHHHHH-------HHHHHHHHhcccccccceeeecccCCccchhhHhHH---HHHHHHHHHHHHHHHHHHH
Q 012803 341 AAGTCLGCLLAALSF-------LFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSL---VTLVSWLGSWIISFTFNFL 410 (456)
Q Consensus 341 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~g~~i~~~~~g~l 410 (456)
.++.+++.+++.... ...++.+.+.....+...+++.|.+|+++|+++.+. .+...++|..++|.+.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l 171 (524)
T 2xut_A 92 SLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLL 171 (524)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777765532 122344444455567788999999999999876666 8899999999999999999
Q ss_pred Hh-hhhhhHHHHHHHHHHHHHHH
Q 012803 411 MK-WSSTGTFFAFSAICSLTVLF 432 (456)
Q Consensus 411 ~~-~~~~~~~~~~~~~~~~~~~~ 432 (456)
.+ .++...+++.+.+.++..++
T Consensus 172 ~~~~g~~~~f~~~~~~~~~~~~~ 194 (524)
T 2xut_A 172 LKNFGAAVAFGIPGVLMFVATVF 194 (524)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHH
T ss_pred hccccHHHHHHHHHHHHHHHHHH
Confidence 88 44444555555444444333
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.14 E-value=2.1e-10 Score=110.63 Aligned_cols=152 Identities=15% Similarity=0.091 Sum_probs=111.2
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhc-----hhhHHH-HHH
Q 012803 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK-----AAWWLD-LGR 134 (456)
Q Consensus 61 ~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-----~~~~l~-~~r 134 (456)
..|.+.++.+.+............+...++.++.+++.||+|||+.++.+....+++.+..+... +...+. ..-
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 378 (491)
T 4gc0_A 299 YAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLF 378 (491)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 34557778888888888888888899999999999999999999999999888888777665431 111122 222
Q ss_pred HHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----------cchHHHHHhHHHHHHHHH
Q 012803 135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----------NWRILALIGTIPCLVQLI 204 (456)
Q Consensus 135 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----------~w~~~f~~~~~~~l~~~~ 204 (456)
+..+++.+ ..+....+.+|.+|.+.|++++++......+|..+++.+...+ ++.+.|++.+.++++..+
T Consensus 379 ~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i 457 (491)
T 4gc0_A 379 YVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAAL 457 (491)
T ss_dssp HHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 22233322 3456678899999999999999999998888888776554322 456678888887777554
Q ss_pred -HhhccCCCh
Q 012803 205 -GLCFIPESP 213 (456)
Q Consensus 205 -~~~~~~~~p 213 (456)
.++++||+.
T Consensus 458 ~~~~~~PETk 467 (491)
T 4gc0_A 458 FMWKFVPETK 467 (491)
T ss_dssp HHHHHCCCCT
T ss_pred HHHheecCCC
Confidence 457899984
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=64.23 E-value=2.4 Score=19.99 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=11.5
Q ss_pred HHhhhhcccCchHH
Q 012803 93 MSGKIADYIGRRGT 106 (456)
Q Consensus 93 ~~G~l~dr~G~r~~ 106 (456)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999865
No 16
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=52.68 E-value=1.4e+02 Score=27.27 Aligned_cols=21 Identities=10% Similarity=-0.195 Sum_probs=9.5
Q ss_pred eeccCCCCchhHHHHHHHHHH
Q 012803 153 AEITPKNLRGGFTTVHQLMIC 173 (456)
Q Consensus 153 ~~~~~~~~r~~~~~~~~~~~~ 173 (456)
...+..++|.+..........
T Consensus 150 ~~~l~~~~~~~~~~~~~~~~~ 170 (460)
T 3mkt_A 150 RSFTDGMSLTKPAMVIGFIGL 170 (460)
T ss_dssp TTTTCTTSCCTTTHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHH
Confidence 444444555444444444333
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=25.11 E-value=1.5e+02 Score=23.72 Aligned_cols=25 Identities=8% Similarity=0.037 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCch
Q 012803 80 GSILTIGAMIGAIMSGKIADYIGRR 104 (456)
Q Consensus 80 ~s~~~~~~~~~~~~~G~l~dr~G~r 104 (456)
+..|.+|+.++..+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 4567788888888889998887644
Done!