Query 012804
Match_columns 456
No_of_seqs 747 out of 2085
Neff 12.2
Searched_HMMs 46136
Date Fri Mar 29 06:29:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.2E-66 4.8E-71 494.5 58.4 449 4-454 434-911 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 7E-66 1.5E-70 491.1 59.2 443 6-452 405-876 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 7.5E-64 1.6E-68 486.0 47.6 439 3-451 148-617 (857)
4 PLN03081 pentatricopeptide (PP 100.0 2.7E-63 5.9E-68 471.0 48.3 438 4-454 120-559 (697)
5 PLN03081 pentatricopeptide (PP 100.0 6.3E-62 1.4E-66 461.7 47.5 435 6-455 86-526 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 3.2E-61 7E-66 467.6 51.3 439 3-455 249-723 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-32 3.1E-37 274.0 57.3 434 4-450 462-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-31 3.2E-36 266.8 57.7 435 8-455 432-869 (899)
9 PRK11447 cellulose synthase su 100.0 1E-24 2.2E-29 218.0 52.3 426 14-451 276-739 (1157)
10 PRK11447 cellulose synthase su 100.0 9.4E-24 2E-28 211.1 58.1 343 2-351 57-524 (1157)
11 KOG4626 O-linked N-acetylgluco 100.0 1.4E-24 3.1E-29 186.0 35.9 386 42-441 116-508 (966)
12 KOG4626 O-linked N-acetylgluco 100.0 2.2E-24 4.7E-29 184.9 35.0 434 9-454 50-487 (966)
13 TIGR00990 3a0801s09 mitochondr 100.0 2.6E-22 5.5E-27 188.8 51.6 426 9-451 129-570 (615)
14 PRK09782 bacteriophage N4 rece 99.9 1E-20 2.2E-25 181.4 52.7 216 231-454 490-708 (987)
15 PRK11788 tetratricopeptide rep 99.9 8.8E-23 1.9E-27 182.8 34.6 297 123-424 46-354 (389)
16 PRK10049 pgaA outer membrane p 99.9 6.3E-21 1.4E-25 182.6 48.8 405 4-417 12-456 (765)
17 PRK15174 Vi polysaccharide exp 99.9 5.8E-21 1.3E-25 179.0 47.2 361 17-386 15-381 (656)
18 PRK10049 pgaA outer membrane p 99.9 1.4E-20 3E-25 180.3 50.4 417 27-455 2-459 (765)
19 PRK11788 tetratricopeptide rep 99.9 1.9E-22 4E-27 180.7 35.5 303 49-358 42-354 (389)
20 KOG2002 TPR-containing nuclear 99.9 2.6E-21 5.7E-26 174.4 41.7 445 3-455 266-748 (1018)
21 PRK15174 Vi polysaccharide exp 99.9 2.4E-21 5.1E-26 181.6 43.3 361 52-420 15-384 (656)
22 PRK14574 hmsH outer membrane p 99.9 8.5E-20 1.8E-24 171.6 53.0 442 7-456 34-517 (822)
23 TIGR00990 3a0801s09 mitochondr 99.9 1.5E-19 3.3E-24 170.2 47.7 400 5-418 158-572 (615)
24 PRK09782 bacteriophage N4 rece 99.9 5E-18 1.1E-22 163.1 51.0 431 6-452 180-740 (987)
25 KOG2002 TPR-containing nuclear 99.9 1E-18 2.3E-23 157.9 40.5 439 7-453 307-799 (1018)
26 PRK14574 hmsH outer membrane p 99.9 5.1E-17 1.1E-21 153.1 49.2 400 12-418 73-514 (822)
27 KOG2003 TPR repeat-containing 99.9 7.4E-19 1.6E-23 146.0 32.0 422 8-438 202-709 (840)
28 KOG4422 Uncharacterized conser 99.9 8E-17 1.7E-21 132.9 40.9 409 5-420 114-593 (625)
29 KOG0495 HAT repeat protein [RN 99.9 4.6E-16 1E-20 135.1 47.2 429 16-456 415-884 (913)
30 KOG1915 Cell cycle control pro 99.9 2.4E-15 5.3E-20 125.9 45.0 430 7-450 107-583 (677)
31 KOG1915 Cell cycle control pro 99.8 4.6E-15 1E-19 124.3 45.1 437 6-454 72-538 (677)
32 KOG4422 Uncharacterized conser 99.8 1.9E-15 4.2E-20 124.9 39.0 408 42-454 116-592 (625)
33 KOG0495 HAT repeat protein [RN 99.8 1.2E-14 2.7E-19 126.5 45.6 435 4-455 377-849 (913)
34 KOG2076 RNA polymerase III tra 99.8 1E-14 2.3E-19 131.6 46.8 441 7-452 139-695 (895)
35 KOG2003 TPR repeat-containing 99.8 6.9E-16 1.5E-20 128.6 32.5 402 47-455 206-692 (840)
36 KOG2076 RNA polymerase III tra 99.8 1.7E-14 3.8E-19 130.1 38.7 186 56-244 153-343 (895)
37 PRK10747 putative protoheme IX 99.8 3.6E-15 7.7E-20 132.2 33.5 280 160-451 97-389 (398)
38 KOG1155 Anaphase-promoting com 99.8 1.9E-13 4.1E-18 114.4 41.0 357 76-449 163-533 (559)
39 PF13429 TPR_15: Tetratricopep 99.8 4.3E-18 9.3E-23 144.3 13.6 259 187-451 13-276 (280)
40 KOG0547 Translocase of outer m 99.8 2.6E-14 5.7E-19 120.3 34.9 217 229-450 338-564 (606)
41 TIGR00540 hemY_coli hemY prote 99.8 5.7E-15 1.2E-19 131.7 33.2 287 159-450 96-397 (409)
42 PRK10747 putative protoheme IX 99.8 1.6E-14 3.5E-19 128.1 33.7 284 55-351 97-390 (398)
43 TIGR00540 hemY_coli hemY prote 99.7 3.1E-14 6.7E-19 127.0 34.0 289 89-384 96-397 (409)
44 PF13429 TPR_15: Tetratricopep 99.7 1.2E-17 2.5E-22 141.7 11.6 258 49-313 15-274 (280)
45 KOG1173 Anaphase-promoting com 99.7 1.2E-12 2.5E-17 112.6 39.3 441 4-455 13-521 (611)
46 KOG1155 Anaphase-promoting com 99.7 1.7E-12 3.8E-17 108.8 38.5 381 38-453 160-554 (559)
47 COG2956 Predicted N-acetylgluc 99.7 3.2E-13 6.8E-18 107.9 31.6 272 90-368 48-326 (389)
48 KOG1126 DNA-binding cell divis 99.7 6.1E-15 1.3E-19 128.8 23.4 282 162-453 334-621 (638)
49 COG3071 HemY Uncharacterized e 99.7 3.3E-13 7.2E-18 111.1 31.7 282 160-450 97-388 (400)
50 KOG0547 Translocase of outer m 99.7 1.2E-12 2.5E-17 110.5 35.3 393 10-417 118-566 (606)
51 COG2956 Predicted N-acetylgluc 99.7 2.2E-13 4.8E-18 108.8 29.4 300 44-351 38-347 (389)
52 COG3071 HemY Uncharacterized e 99.7 1.2E-12 2.6E-17 107.9 32.8 292 55-356 97-395 (400)
53 KOG1126 DNA-binding cell divis 99.7 2.8E-14 6.1E-19 124.8 24.5 283 58-351 335-620 (638)
54 KOG1156 N-terminal acetyltrans 99.6 1.3E-10 2.7E-15 102.0 40.7 437 2-453 3-469 (700)
55 KOG1156 N-terminal acetyltrans 99.6 1.4E-10 3.1E-15 101.7 40.9 430 8-451 42-510 (700)
56 KOG2047 mRNA splicing factor [ 99.6 5.8E-10 1.3E-14 97.8 43.8 432 7-451 102-614 (835)
57 KOG1173 Anaphase-promoting com 99.6 9.2E-12 2E-16 107.2 31.5 282 144-432 241-531 (611)
58 KOG3785 Uncharacterized conser 99.6 2.7E-11 5.9E-16 98.4 31.2 402 14-426 29-497 (557)
59 KOG2376 Signal recognition par 99.6 2.9E-10 6.2E-15 98.7 38.8 415 13-449 18-517 (652)
60 PRK12370 invasion protein regu 99.6 7E-12 1.5E-16 116.3 31.1 269 39-317 253-536 (553)
61 KOG1174 Anaphase-promoting com 99.6 2.2E-09 4.9E-14 89.3 40.6 184 229-417 312-500 (564)
62 TIGR02521 type_IV_pilW type IV 99.6 6.6E-12 1.4E-16 104.2 26.4 201 41-245 30-231 (234)
63 KOG4318 Bicoid mRNA stability 99.6 1.1E-11 2.5E-16 112.1 28.3 274 29-337 12-286 (1088)
64 KOG4162 Predicted calmodulin-b 99.6 4.2E-10 9E-15 100.8 37.2 436 9-452 285-783 (799)
65 KOG1129 TPR repeat-containing 99.6 1.2E-12 2.6E-17 104.8 19.3 225 186-415 227-456 (478)
66 KOG3785 Uncharacterized conser 99.6 1.6E-10 3.4E-15 94.1 31.5 185 49-246 29-214 (557)
67 KOG4318 Bicoid mRNA stability 99.6 4.6E-12 9.9E-17 114.6 24.9 275 63-372 11-286 (1088)
68 TIGR02521 type_IV_pilW type IV 99.6 9.3E-12 2E-16 103.3 25.6 198 252-452 31-232 (234)
69 PRK12370 invasion protein regu 99.5 9.9E-12 2.2E-16 115.4 27.9 264 181-453 255-536 (553)
70 KOG1129 TPR repeat-containing 99.5 1.5E-12 3.3E-17 104.3 19.0 233 216-454 222-460 (478)
71 KOG1174 Anaphase-promoting com 99.5 2.4E-09 5.2E-14 89.1 37.1 268 179-453 229-501 (564)
72 KOG2047 mRNA splicing factor [ 99.5 1.5E-08 3.3E-13 89.2 43.1 363 78-449 249-684 (835)
73 PF12569 NARP1: NMDA receptor- 99.5 7.2E-10 1.6E-14 99.6 35.4 260 48-316 10-291 (517)
74 PF12569 NARP1: NMDA receptor- 99.5 3.2E-10 6.9E-15 101.8 32.2 288 156-451 13-333 (517)
75 KOG1840 Kinesin light chain [C 99.5 3.6E-11 7.8E-16 106.5 24.3 236 217-452 199-479 (508)
76 KOG0548 Molecular co-chaperone 99.4 1.4E-09 3.1E-14 93.6 30.6 399 14-434 9-471 (539)
77 KOG1840 Kinesin light chain [C 99.4 3.3E-10 7.1E-15 100.5 27.1 236 148-383 200-476 (508)
78 COG3063 PilF Tfp pilus assembl 99.4 7E-10 1.5E-14 85.0 24.5 197 10-210 38-235 (250)
79 PRK11189 lipoprotein NlpI; Pro 99.4 3E-10 6.6E-15 96.6 24.8 225 193-427 37-274 (296)
80 PRK11189 lipoprotein NlpI; Pro 99.4 1.1E-09 2.5E-14 93.1 27.6 222 158-388 37-267 (296)
81 COG3063 PilF Tfp pilus assembl 99.4 2.3E-09 5E-14 82.2 24.6 197 115-315 38-235 (250)
82 cd05804 StaR_like StaR_like; a 99.4 2.7E-08 5.8E-13 88.2 35.2 205 3-210 2-214 (355)
83 cd05804 StaR_like StaR_like; a 99.3 4.8E-08 1E-12 86.6 34.6 92 222-314 119-213 (355)
84 PF13041 PPR_2: PPR repeat fam 99.3 4.9E-12 1.1E-16 75.1 6.3 40 45-84 6-45 (50)
85 PF13041 PPR_2: PPR repeat fam 99.3 7.1E-12 1.5E-16 74.4 6.4 50 5-54 1-50 (50)
86 KOG4340 Uncharacterized conser 99.3 3.3E-08 7.1E-13 79.0 28.0 315 10-347 13-335 (459)
87 PF04733 Coatomer_E: Coatomer 99.3 1.6E-10 3.5E-15 96.6 15.9 249 154-417 8-265 (290)
88 KOG4162 Predicted calmodulin-b 99.3 3.7E-08 8E-13 88.7 31.0 403 5-418 321-784 (799)
89 KOG4340 Uncharacterized conser 99.3 1.2E-07 2.6E-12 75.8 29.5 288 4-313 41-336 (459)
90 KOG0548 Molecular co-chaperone 99.3 8.6E-08 1.9E-12 82.9 30.7 388 49-455 9-458 (539)
91 KOG2376 Signal recognition par 99.3 8.3E-07 1.8E-11 77.9 39.1 393 44-455 14-490 (652)
92 KOG0624 dsRNA-activated protei 99.3 4.6E-07 9.9E-12 74.1 34.5 316 7-352 38-371 (504)
93 KOG3617 WD40 and TPR repeat-co 99.2 6.6E-07 1.4E-11 81.6 36.0 418 7-454 757-1361(1416)
94 PRK04841 transcriptional regul 99.2 2.8E-07 6E-12 92.5 38.1 333 86-418 383-761 (903)
95 KOG3617 WD40 and TPR repeat-co 99.2 1.6E-07 3.4E-12 85.5 30.6 343 16-385 737-1173(1416)
96 KOG0624 dsRNA-activated protei 99.2 7.1E-07 1.5E-11 73.0 31.1 311 77-418 38-371 (504)
97 PRK04841 transcriptional regul 99.2 5.8E-07 1.3E-11 90.2 38.3 332 121-452 383-760 (903)
98 KOG1127 TPR repeat-containing 99.2 6.7E-07 1.5E-11 83.2 33.1 433 6-448 491-992 (1238)
99 KOG1125 TPR repeat-containing 99.2 1.1E-08 2.4E-13 89.0 20.0 250 190-445 293-564 (579)
100 KOG0985 Vesicle coat protein c 99.1 4.1E-06 9E-11 78.3 36.6 391 3-442 948-1373(1666)
101 PF04733 Coatomer_E: Coatomer 99.1 8.4E-09 1.8E-13 86.4 18.2 251 120-386 9-265 (290)
102 KOG0985 Vesicle coat protein c 99.1 8.3E-06 1.8E-10 76.4 38.0 311 11-345 842-1217(1666)
103 KOG1128 Uncharacterized conser 99.1 7.8E-08 1.7E-12 86.2 23.6 220 178-417 394-616 (777)
104 PLN02789 farnesyltranstransfer 99.1 3.7E-07 8E-12 77.7 26.7 201 230-435 50-267 (320)
105 KOG1127 TPR repeat-containing 99.1 2.2E-06 4.7E-11 80.0 32.2 424 20-451 471-951 (1238)
106 KOG1914 mRNA cleavage and poly 99.1 6.4E-06 1.4E-10 71.8 40.9 410 2-417 15-501 (656)
107 KOG3616 Selective LIM binding 99.1 1.1E-06 2.5E-11 79.2 29.4 193 223-446 738-931 (1636)
108 KOG1125 TPR repeat-containing 99.0 1.6E-07 3.4E-12 82.1 21.9 88 121-210 294-381 (579)
109 KOG3616 Selective LIM binding 99.0 3.3E-06 7.1E-11 76.4 29.9 107 156-275 741-847 (1636)
110 KOG1128 Uncharacterized conser 99.0 1.3E-07 2.8E-12 84.8 21.0 220 214-453 395-617 (777)
111 PRK10370 formate-dependent nit 99.0 1.4E-07 3.1E-12 74.6 18.9 146 259-418 23-174 (198)
112 PLN02789 farnesyltranstransfer 99.0 2.7E-06 5.8E-11 72.5 27.6 204 90-299 50-267 (320)
113 COG5010 TadD Flp pilus assembl 99.0 2.9E-07 6.2E-12 72.6 19.7 156 256-414 70-228 (257)
114 KOG1070 rRNA processing protei 98.9 1.3E-06 2.8E-11 84.2 25.6 222 216-441 1457-1689(1710)
115 TIGR03302 OM_YfiO outer membra 98.9 3.1E-07 6.8E-12 76.0 19.4 190 249-453 30-233 (235)
116 KOG1070 rRNA processing protei 98.9 1.9E-06 4E-11 83.2 26.1 244 29-278 1446-1697(1710)
117 PRK14720 transcript cleavage f 98.9 3.5E-06 7.5E-11 80.3 27.5 242 3-298 27-268 (906)
118 TIGR03302 OM_YfiO outer membra 98.9 6E-07 1.3E-11 74.3 20.4 190 3-211 29-232 (235)
119 COG5010 TadD Flp pilus assembl 98.9 3.4E-07 7.3E-12 72.2 17.1 165 41-210 66-230 (257)
120 PRK15359 type III secretion sy 98.8 3.8E-07 8.2E-12 68.3 15.7 104 325-430 27-133 (144)
121 PRK14720 transcript cleavage f 98.8 5.5E-06 1.2E-10 78.9 26.7 235 111-399 30-268 (906)
122 KOG1914 mRNA cleavage and poly 98.8 5.9E-05 1.3E-09 66.1 41.5 411 34-451 13-500 (656)
123 PRK15179 Vi polysaccharide bio 98.8 1.8E-06 3.8E-11 81.3 22.9 132 283-417 82-217 (694)
124 KOG2053 Mitochondrial inherita 98.8 0.0001 2.3E-09 68.5 44.0 423 16-450 18-534 (932)
125 KOG3081 Vesicle coat complex C 98.8 8.7E-06 1.9E-10 64.5 22.7 248 154-417 15-271 (299)
126 KOG3081 Vesicle coat complex C 98.8 2.1E-05 4.6E-10 62.3 24.0 105 192-301 147-255 (299)
127 PRK15359 type III secretion sy 98.8 2.8E-07 6.2E-12 68.9 13.6 109 342-455 13-124 (144)
128 PRK10370 formate-dependent nit 98.8 3.3E-06 7.1E-11 66.9 20.0 119 55-176 52-173 (198)
129 PRK15179 Vi polysaccharide bio 98.8 7.7E-06 1.7E-10 77.1 24.6 160 247-415 81-243 (694)
130 COG4783 Putative Zn-dependent 98.7 0.00011 2.4E-09 63.7 28.3 147 261-426 315-462 (484)
131 PF12854 PPR_1: PPR repeat 98.7 2E-08 4.3E-13 53.3 3.7 31 73-103 3-33 (34)
132 KOG3060 Uncharacterized conser 98.7 2E-05 4.3E-10 62.0 20.2 201 229-433 24-235 (289)
133 PF12854 PPR_1: PPR repeat 98.7 4E-08 8.6E-13 52.1 3.9 32 107-138 2-33 (34)
134 KOG3060 Uncharacterized conser 98.7 8E-05 1.7E-09 58.8 23.2 187 161-351 26-220 (289)
135 TIGR02552 LcrH_SycD type III s 98.6 1.1E-06 2.4E-11 65.5 12.4 108 309-418 5-115 (135)
136 COG4783 Putative Zn-dependent 98.6 3.3E-05 7.1E-10 66.9 21.1 123 293-417 312-437 (484)
137 TIGR02552 LcrH_SycD type III s 98.6 4.3E-06 9.3E-11 62.4 13.9 110 29-141 5-114 (135)
138 PF09976 TPR_21: Tetratricopep 98.5 1.1E-05 2.4E-10 60.7 14.7 54 393-448 90-143 (145)
139 PF09976 TPR_21: Tetratricopep 98.5 1.7E-05 3.7E-10 59.7 15.6 115 300-414 24-144 (145)
140 KOG2041 WD40 repeat protein [G 98.5 0.00092 2E-08 60.8 29.1 215 22-277 678-903 (1189)
141 KOG2053 Mitochondrial inherita 98.4 0.0016 3.5E-08 61.0 44.0 424 10-445 44-563 (932)
142 PRK15363 pathogenicity island 98.4 8E-06 1.7E-10 60.1 11.7 92 325-417 38-132 (157)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 3.2E-05 6.8E-10 67.5 16.0 124 255-384 172-295 (395)
144 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 2.8E-05 6.1E-10 67.8 15.7 123 81-209 173-295 (395)
145 TIGR02795 tol_pal_ybgF tol-pal 98.3 2.3E-05 4.9E-10 56.9 11.7 95 323-418 3-106 (119)
146 COG4700 Uncharacterized protei 98.2 0.00056 1.2E-08 51.4 17.8 120 321-442 88-212 (251)
147 PRK10866 outer membrane biogen 98.2 0.0006 1.3E-08 56.1 19.8 178 258-451 38-240 (243)
148 PRK15363 pathogenicity island 98.2 0.00014 3E-09 53.7 13.7 99 286-386 34-132 (157)
149 cd00189 TPR Tetratricopeptide 98.2 2.5E-05 5.4E-10 54.1 9.9 90 363-453 6-98 (100)
150 PF13432 TPR_16: Tetratricopep 98.2 1.1E-05 2.3E-10 51.1 6.5 62 394-456 3-64 (65)
151 TIGR00756 PPR pentatricopeptid 98.2 4.3E-06 9.3E-11 45.1 4.1 33 9-41 2-34 (35)
152 PF13812 PPR_3: Pentatricopept 98.1 4.7E-06 1E-10 44.6 4.1 33 8-40 2-34 (34)
153 PF10037 MRP-S27: Mitochondria 98.1 9E-05 2E-09 65.0 13.9 118 216-333 65-184 (429)
154 PF05843 Suf: Suppressor of fo 98.1 5.9E-05 1.3E-09 63.6 12.6 128 288-417 2-136 (280)
155 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00013 2.9E-09 52.8 13.1 100 8-107 3-106 (119)
156 TIGR00756 PPR pentatricopeptid 98.1 4.6E-06 1E-10 45.0 3.9 31 80-110 3-33 (35)
157 PF13812 PPR_3: Pentatricopept 98.1 5.6E-06 1.2E-10 44.3 4.0 32 44-75 3-34 (34)
158 KOG0550 Molecular chaperone (D 98.1 0.0041 9E-08 53.1 22.2 53 86-139 58-110 (486)
159 PF08579 RPM2: Mitochondrial r 98.1 9.3E-05 2E-09 50.5 10.2 75 12-86 30-113 (120)
160 PLN03088 SGT1, suppressor of 98.1 6.2E-05 1.3E-09 66.0 12.2 101 327-429 7-110 (356)
161 PRK02603 photosystem I assembl 98.1 0.00036 7.7E-09 54.4 15.2 90 288-378 36-127 (172)
162 PLN03088 SGT1, suppressor of 98.1 0.00015 3.2E-09 63.6 14.3 93 292-386 7-99 (356)
163 PF14938 SNAP: Soluble NSF att 98.1 0.00053 1.2E-08 58.2 17.3 132 258-389 120-269 (282)
164 PF12895 Apc3: Anaphase-promot 98.1 1E-05 2.3E-10 54.2 5.6 81 20-102 2-83 (84)
165 PF10037 MRP-S27: Mitochondria 98.1 0.00012 2.7E-09 64.2 13.4 123 73-195 62-186 (429)
166 PRK10866 outer membrane biogen 98.0 0.0025 5.5E-08 52.4 20.0 184 41-244 31-239 (243)
167 PF13414 TPR_11: TPR repeat; P 98.0 2.2E-05 4.8E-10 50.3 6.5 67 387-454 2-69 (69)
168 PF05843 Suf: Suppressor of fo 98.0 0.00029 6.2E-09 59.5 14.7 131 253-386 2-136 (280)
169 PF12895 Apc3: Anaphase-promot 98.0 3.3E-05 7.2E-10 51.8 7.4 13 337-349 4-16 (84)
170 cd00189 TPR Tetratricopeptide 98.0 0.00017 3.6E-09 49.8 11.5 86 120-207 8-93 (100)
171 KOG0550 Molecular chaperone (D 98.0 0.0066 1.4E-07 51.9 23.0 59 10-69 52-110 (486)
172 PF14938 SNAP: Soluble NSF att 98.0 0.00032 7E-09 59.5 15.1 127 254-383 37-181 (282)
173 KOG2041 WD40 repeat protein [G 98.0 0.011 2.4E-07 54.2 28.2 206 3-243 688-904 (1189)
174 PF13525 YfiO: Outer membrane 98.0 0.0015 3.3E-08 52.3 18.0 172 258-444 11-199 (203)
175 PRK02603 photosystem I assembl 98.0 0.00042 9E-09 54.0 14.2 97 44-141 37-149 (172)
176 CHL00033 ycf3 photosystem I as 98.0 0.00051 1.1E-08 53.3 14.2 81 287-368 35-117 (168)
177 KOG0553 TPR repeat-containing 98.0 0.00014 3.1E-09 59.0 10.8 88 297-386 91-178 (304)
178 PF12688 TPR_5: Tetratrico pep 98.0 0.00084 1.8E-08 47.8 13.6 92 293-385 7-103 (120)
179 KOG1130 Predicted G-alpha GTPa 97.9 0.00017 3.7E-09 61.1 11.4 129 288-416 196-343 (639)
180 COG4700 Uncharacterized protei 97.9 0.0044 9.4E-08 46.8 19.3 134 248-383 85-219 (251)
181 PF08579 RPM2: Mitochondrial r 97.9 0.00023 4.9E-09 48.7 9.5 67 91-157 39-114 (120)
182 PRK10153 DNA-binding transcrip 97.9 0.001 2.2E-08 61.2 17.0 133 283-417 333-482 (517)
183 PF14559 TPR_19: Tetratricopep 97.9 6.6E-05 1.4E-09 47.9 6.8 64 17-83 1-64 (68)
184 PRK10153 DNA-binding transcrip 97.9 0.0011 2.5E-08 60.8 17.0 136 37-176 332-482 (517)
185 COG4235 Cytochrome c biogenesi 97.9 0.00078 1.7E-08 55.2 14.0 114 303-418 138-257 (287)
186 KOG1130 Predicted G-alpha GTPa 97.9 0.00025 5.4E-09 60.2 11.5 129 324-452 197-344 (639)
187 KOG0553 TPR repeat-containing 97.9 0.00019 4.2E-09 58.3 10.3 99 329-430 88-189 (304)
188 COG4235 Cytochrome c biogenesi 97.9 0.001 2.3E-08 54.5 14.5 116 268-386 138-256 (287)
189 CHL00033 ycf3 photosystem I as 97.9 0.00065 1.4E-08 52.7 13.0 114 23-137 15-138 (168)
190 PF13432 TPR_16: Tetratricopep 97.8 0.00013 2.8E-09 46.0 7.0 58 13-71 3-60 (65)
191 PF14559 TPR_19: Tetratricopep 97.8 3.7E-05 8E-10 49.1 4.4 49 369-417 3-54 (68)
192 PF13414 TPR_11: TPR repeat; P 97.8 0.00015 3.3E-09 46.4 7.3 65 6-71 2-67 (69)
193 PF01535 PPR: PPR repeat; Int 97.8 3.7E-05 8.1E-10 39.9 3.3 29 9-37 2-30 (31)
194 PF12688 TPR_5: Tetratrico pep 97.8 0.0031 6.8E-08 45.0 13.8 92 12-105 6-103 (120)
195 PF01535 PPR: PPR repeat; Int 97.8 4.3E-05 9.2E-10 39.7 3.4 26 80-105 3-28 (31)
196 PF13525 YfiO: Outer membrane 97.7 0.0065 1.4E-07 48.7 17.1 65 7-71 5-71 (203)
197 PRK10803 tol-pal system protei 97.7 0.00086 1.9E-08 55.6 12.0 93 324-417 145-246 (263)
198 KOG1538 Uncharacterized conser 97.6 0.024 5.2E-07 51.6 19.9 92 111-207 555-657 (1081)
199 PRK15331 chaperone protein Sic 97.6 0.0025 5.5E-08 47.5 11.5 85 331-416 46-133 (165)
200 COG3898 Uncharacterized membra 97.6 0.039 8.4E-07 47.1 30.3 278 160-452 97-392 (531)
201 PF13371 TPR_9: Tetratricopept 97.6 0.00036 7.8E-09 45.2 6.4 52 366-417 4-58 (73)
202 PF06239 ECSIT: Evolutionarily 97.5 0.002 4.4E-08 50.2 10.6 72 161-232 66-153 (228)
203 COG4105 ComL DNA uptake lipopr 97.5 0.034 7.4E-07 44.9 20.4 176 261-452 43-233 (254)
204 PRK10803 tol-pal system protei 97.5 0.0045 9.8E-08 51.4 13.4 96 10-105 146-245 (263)
205 KOG2796 Uncharacterized conser 97.5 0.0077 1.7E-07 48.2 13.4 154 15-176 157-315 (366)
206 PF06239 ECSIT: Evolutionarily 97.4 0.002 4.2E-08 50.2 9.8 99 27-127 34-153 (228)
207 PF13371 TPR_9: Tetratricopept 97.4 0.0013 2.9E-08 42.5 7.6 58 14-72 2-59 (73)
208 PF10300 DUF3808: Protein of u 97.4 0.022 4.8E-07 52.1 17.7 173 272-451 177-375 (468)
209 KOG1258 mRNA processing protei 97.3 0.12 2.7E-06 46.9 25.7 344 76-443 44-420 (577)
210 PF13424 TPR_12: Tetratricopep 97.3 0.0011 2.3E-08 43.6 6.4 60 391-450 8-73 (78)
211 KOG1538 Uncharacterized conser 97.3 0.061 1.3E-06 49.2 18.6 78 116-205 602-681 (1081)
212 PF07079 DUF1347: Protein of u 97.3 0.1 2.2E-06 45.7 39.6 422 17-451 16-523 (549)
213 PF13281 DUF4071: Domain of un 97.3 0.1 2.2E-06 45.4 19.6 94 222-315 146-254 (374)
214 PRK15331 chaperone protein Sic 97.3 0.036 7.9E-07 41.5 14.3 92 293-386 43-134 (165)
215 PF13424 TPR_12: Tetratricopep 97.2 0.00067 1.4E-08 44.6 4.8 59 357-415 5-73 (78)
216 PF03704 BTAD: Bacterial trans 97.2 0.0079 1.7E-07 45.4 11.3 31 321-351 2-35 (146)
217 KOG4555 TPR repeat-containing 97.2 0.0056 1.2E-07 43.2 9.1 86 366-452 52-144 (175)
218 KOG1941 Acetylcholine receptor 97.2 0.019 4.1E-07 48.4 13.8 56 393-448 211-271 (518)
219 PF13281 DUF4071: Domain of un 97.2 0.12 2.6E-06 45.0 19.8 169 41-211 140-334 (374)
220 PF03704 BTAD: Bacterial trans 97.2 0.0052 1.1E-07 46.4 10.0 70 44-114 64-138 (146)
221 KOG2114 Vacuolar assembly/sort 97.2 0.22 4.8E-06 47.2 23.9 178 10-208 337-516 (933)
222 KOG1258 mRNA processing protei 97.2 0.18 3.8E-06 46.0 35.0 181 253-437 298-489 (577)
223 KOG1585 Protein required for f 97.2 0.083 1.8E-06 42.1 15.8 19 396-414 198-216 (308)
224 KOG2610 Uncharacterized conser 97.1 0.034 7.3E-07 46.5 13.8 153 229-383 115-273 (491)
225 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.024 5.3E-07 49.9 13.7 68 3-71 71-141 (453)
226 PF04840 Vps16_C: Vps16, C-ter 97.1 0.17 3.7E-06 43.5 28.7 298 79-436 2-304 (319)
227 PF04840 Vps16_C: Vps16, C-ter 97.0 0.17 3.8E-06 43.5 29.1 110 252-381 177-286 (319)
228 PF13512 TPR_18: Tetratricopep 97.0 0.02 4.4E-07 41.7 10.9 53 333-386 21-76 (142)
229 KOG2796 Uncharacterized conser 97.0 0.14 3E-06 41.5 24.8 129 290-418 180-316 (366)
230 KOG2280 Vacuolar assembly/sort 97.0 0.32 7E-06 45.6 30.6 109 289-412 686-794 (829)
231 COG1729 Uncharacterized protei 97.0 0.023 5E-07 46.3 11.6 93 324-417 144-244 (262)
232 KOG0543 FKBP-type peptidyl-pro 96.9 0.0086 1.9E-07 51.3 9.5 126 326-452 212-355 (397)
233 KOG1941 Acetylcholine receptor 96.9 0.21 4.6E-06 42.5 18.4 129 257-385 127-274 (518)
234 COG3118 Thioredoxin domain-con 96.9 0.18 3.9E-06 41.7 16.9 140 297-438 144-287 (304)
235 PF13428 TPR_14: Tetratricopep 96.9 0.0031 6.7E-08 35.8 4.7 41 389-430 2-42 (44)
236 PF10300 DUF3808: Protein of u 96.8 0.16 3.4E-06 46.7 17.3 177 27-210 177-375 (468)
237 COG3118 Thioredoxin domain-con 96.8 0.24 5.2E-06 41.0 17.3 139 261-402 143-286 (304)
238 PF12921 ATP13: Mitochondrial 96.8 0.036 7.9E-07 40.0 10.4 50 318-367 48-98 (126)
239 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.35 7.7E-06 42.5 38.0 141 289-433 399-545 (660)
240 smart00299 CLH Clathrin heavy 96.7 0.15 3.2E-06 38.1 15.3 126 10-158 10-136 (140)
241 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.023 5E-07 50.1 10.7 64 321-386 74-141 (453)
242 COG3898 Uncharacterized membra 96.7 0.33 7.1E-06 41.8 30.3 247 125-385 133-391 (531)
243 KOG0543 FKBP-type peptidyl-pro 96.7 0.047 1E-06 47.1 12.2 126 291-417 212-355 (397)
244 PF13428 TPR_14: Tetratricopep 96.7 0.0057 1.2E-07 34.7 4.9 41 8-49 2-42 (44)
245 KOG1585 Protein required for f 96.6 0.26 5.6E-06 39.5 16.1 87 7-103 31-117 (308)
246 COG1729 Uncharacterized protei 96.6 0.05 1.1E-06 44.4 11.3 97 289-386 144-244 (262)
247 PRK11906 transcriptional regul 96.5 0.34 7.4E-06 43.1 16.5 145 268-415 274-434 (458)
248 PF12921 ATP13: Mitochondrial 96.4 0.1 2.2E-06 37.8 10.7 47 214-260 49-96 (126)
249 KOG2114 Vacuolar assembly/sort 96.3 1.1 2.3E-05 43.0 28.0 150 45-207 337-488 (933)
250 PF04053 Coatomer_WDAD: Coatom 96.3 0.18 4E-06 45.6 14.1 159 15-207 269-427 (443)
251 PF13512 TPR_18: Tetratricopep 96.3 0.26 5.5E-06 36.2 12.2 82 7-88 10-93 (142)
252 PF04053 Coatomer_WDAD: Coatom 96.2 0.23 5E-06 44.9 14.3 27 181-207 346-372 (443)
253 smart00299 CLH Clathrin heavy 96.2 0.33 7.2E-06 36.2 15.9 84 256-347 11-94 (140)
254 COG5107 RNA14 Pre-mRNA 3'-end 96.2 0.8 1.7E-05 40.4 21.0 84 3-89 38-121 (660)
255 PRK11906 transcriptional regul 96.1 0.22 4.7E-06 44.3 13.0 159 288-448 252-432 (458)
256 COG4649 Uncharacterized protei 96.1 0.42 9.1E-06 36.1 12.7 131 286-417 58-196 (221)
257 KOG4555 TPR repeat-containing 96.0 0.13 2.9E-06 36.5 9.0 55 296-351 52-106 (175)
258 KOG2610 Uncharacterized conser 95.8 1 2.2E-05 38.2 15.7 115 90-206 116-233 (491)
259 PF04184 ST7: ST7 protein; In 95.8 1.3 2.7E-05 39.9 16.0 59 326-384 263-322 (539)
260 PF07719 TPR_2: Tetratricopept 95.7 0.032 7E-07 29.3 4.3 30 426-455 4-33 (34)
261 PF07079 DUF1347: Protein of u 95.7 1.4 3E-05 39.1 36.8 405 10-429 49-531 (549)
262 PF09205 DUF1955: Domain of un 95.6 0.54 1.2E-05 33.7 14.1 61 257-318 91-151 (161)
263 COG2976 Uncharacterized protei 95.6 0.81 1.8E-05 35.5 13.4 145 272-418 39-189 (207)
264 PF08631 SPO22: Meiosis protei 95.5 1.3 2.8E-05 37.7 26.0 122 18-141 4-150 (278)
265 KOG3941 Intermediate in Toll s 95.5 0.13 2.7E-06 42.1 8.4 34 129-162 140-173 (406)
266 PF08631 SPO22: Meiosis protei 95.5 1.4 3E-05 37.5 25.1 61 220-281 87-150 (278)
267 COG4105 ComL DNA uptake lipopr 95.5 1.1 2.5E-05 36.5 20.6 72 87-158 44-117 (254)
268 PF13170 DUF4003: Protein of u 95.5 1.4 3.1E-05 37.6 17.1 132 58-191 78-226 (297)
269 COG0457 NrfG FOG: TPR repeat [ 95.4 1.2 2.6E-05 36.6 28.7 221 195-417 36-265 (291)
270 PF13431 TPR_17: Tetratricopep 95.4 0.026 5.6E-07 29.7 3.1 32 411-443 2-33 (34)
271 KOG3941 Intermediate in Toll s 95.4 0.23 5.1E-06 40.6 9.5 99 41-139 66-186 (406)
272 PF09205 DUF1955: Domain of un 95.3 0.7 1.5E-05 33.2 14.7 138 297-453 12-150 (161)
273 COG3629 DnrI DNA-binding trans 95.3 0.31 6.8E-06 40.6 10.5 80 41-121 152-236 (280)
274 KOG2280 Vacuolar assembly/sort 95.3 2.7 5.9E-05 39.9 36.1 111 323-448 685-795 (829)
275 PF09613 HrpB1_HrpK: Bacterial 95.3 0.9 1.9E-05 34.2 13.5 56 15-71 18-73 (160)
276 COG4649 Uncharacterized protei 95.2 0.96 2.1E-05 34.3 13.6 138 42-180 59-200 (221)
277 COG3629 DnrI DNA-binding trans 95.2 0.28 6.1E-06 40.8 9.8 75 358-432 154-236 (280)
278 PF10345 Cohesin_load: Cohesin 95.1 3.5 7.5E-05 39.8 40.0 188 263-451 372-605 (608)
279 KOG4234 TPR repeat-containing 95.0 0.24 5.1E-06 38.4 8.2 91 328-419 101-199 (271)
280 PF13176 TPR_7: Tetratricopept 95.0 0.057 1.2E-06 28.9 3.7 25 391-415 2-26 (36)
281 PF10602 RPN7: 26S proteasome 94.9 0.56 1.2E-05 36.5 10.5 97 44-140 38-141 (177)
282 PF13176 TPR_7: Tetratricopept 94.9 0.062 1.3E-06 28.7 3.8 25 425-449 1-25 (36)
283 PF00515 TPR_1: Tetratricopept 94.7 0.069 1.5E-06 28.0 3.6 29 389-417 2-30 (34)
284 KOG1920 IkappaB kinase complex 94.6 5.7 0.00012 40.1 22.5 20 426-445 1187-1206(1265)
285 KOG1550 Extracellular protein 94.4 4.7 0.0001 38.3 25.0 273 163-452 228-538 (552)
286 COG4785 NlpI Lipoprotein NlpI, 94.4 2 4.4E-05 34.0 17.3 29 389-417 238-266 (297)
287 COG0457 NrfG FOG: TPR repeat [ 94.4 2.4 5.2E-05 34.7 29.3 87 228-316 178-265 (291)
288 PF00515 TPR_1: Tetratricopept 94.4 0.15 3.3E-06 26.6 4.5 30 8-37 2-31 (34)
289 COG4785 NlpI Lipoprotein NlpI, 94.3 2.1 4.7E-05 33.9 16.6 182 264-454 77-268 (297)
290 COG2909 MalT ATP-dependent tra 94.3 5.7 0.00012 38.7 24.7 188 262-452 425-647 (894)
291 PF13431 TPR_17: Tetratricopep 94.3 0.058 1.2E-06 28.4 2.6 32 30-62 2-33 (34)
292 PF10602 RPN7: 26S proteasome 94.2 2 4.3E-05 33.5 12.0 98 78-175 37-141 (177)
293 PRK15180 Vi polysaccharide bio 94.2 0.47 1E-05 42.1 9.1 124 297-423 299-426 (831)
294 PF07719 TPR_2: Tetratricopept 94.2 0.14 3E-06 26.7 4.1 30 389-418 2-31 (34)
295 COG2976 Uncharacterized protei 94.0 2.3 5E-05 33.1 15.2 85 366-452 98-188 (207)
296 PF09613 HrpB1_HrpK: Bacterial 93.8 2.1 4.6E-05 32.2 13.4 52 298-351 21-73 (160)
297 PF04184 ST7: ST7 protein; In 93.8 5 0.00011 36.4 19.8 61 256-316 263-324 (539)
298 PF00637 Clathrin: Region in C 93.8 0.0019 4.1E-08 48.5 -5.2 53 14-66 14-66 (143)
299 PF07035 Mic1: Colon cancer-as 93.2 3 6.4E-05 31.9 14.9 30 274-303 16-45 (167)
300 PF13181 TPR_8: Tetratricopept 93.2 0.25 5.4E-06 25.8 4.0 26 391-416 4-29 (34)
301 KOG1920 IkappaB kinase complex 93.1 11 0.00024 38.2 25.5 105 295-413 947-1051(1265)
302 PF13170 DUF4003: Protein of u 92.9 5.5 0.00012 34.1 19.6 47 165-211 80-132 (297)
303 KOG4570 Uncharacterized conser 92.7 1.1 2.4E-05 37.5 8.6 102 213-316 60-164 (418)
304 PF07035 Mic1: Colon cancer-as 92.7 3.5 7.6E-05 31.5 15.3 134 98-245 15-148 (167)
305 cd00923 Cyt_c_Oxidase_Va Cytoc 92.7 0.6 1.3E-05 31.3 5.7 45 406-450 25-69 (103)
306 PF13174 TPR_6: Tetratricopept 92.7 0.21 4.5E-06 25.8 3.2 25 429-453 6-30 (33)
307 PF11207 DUF2989: Protein of u 92.5 1.4 3.1E-05 34.6 8.5 76 367-444 117-199 (203)
308 TIGR02561 HrpB1_HrpK type III 92.3 3.6 7.8E-05 30.5 12.2 52 298-351 21-73 (153)
309 cd00923 Cyt_c_Oxidase_Va Cytoc 92.3 1.6 3.4E-05 29.4 7.2 45 270-314 25-69 (103)
310 KOG1550 Extracellular protein 92.2 11 0.00024 35.9 25.3 275 128-417 228-538 (552)
311 KOG1586 Protein required for f 92.2 5.3 0.00011 32.2 15.2 17 228-244 25-41 (288)
312 PF06552 TOM20_plant: Plant sp 92.1 3.1 6.6E-05 32.0 9.6 28 404-433 96-123 (186)
313 PF02284 COX5A: Cytochrome c o 92.1 2.7 5.9E-05 28.7 9.3 42 308-349 31-72 (108)
314 TIGR02561 HrpB1_HrpK type III 92.1 3.8 8.3E-05 30.4 12.1 53 18-71 21-73 (153)
315 PRK11619 lytic murein transgly 92.0 13 0.00027 36.1 30.9 319 78-414 35-372 (644)
316 PF02259 FAT: FAT domain; Int 92.0 8.4 0.00018 34.1 22.8 66 285-350 144-212 (352)
317 PF13374 TPR_10: Tetratricopep 91.9 0.47 1E-05 26.1 4.3 28 8-35 3-30 (42)
318 PF02284 COX5A: Cytochrome c o 91.8 1.9 4.1E-05 29.4 7.3 60 270-330 28-87 (108)
319 PF04097 Nic96: Nup93/Nic96; 91.7 13 0.00029 35.9 25.4 87 190-281 266-356 (613)
320 KOG0276 Vesicle coat complex C 91.6 9.2 0.0002 35.6 13.5 152 17-208 596-747 (794)
321 KOG2471 TPR repeat-containing 91.4 6.4 0.00014 35.5 12.1 45 390-435 337-381 (696)
322 KOG4234 TPR repeat-containing 90.9 4.2 9.1E-05 31.9 9.3 92 49-142 102-198 (271)
323 COG1747 Uncharacterized N-term 90.9 13 0.00027 34.1 24.5 96 250-350 64-159 (711)
324 PF13374 TPR_10: Tetratricopep 90.8 0.61 1.3E-05 25.6 4.0 28 389-416 3-30 (42)
325 KOG1464 COP9 signalosome, subu 90.8 8.3 0.00018 31.8 17.5 173 142-314 21-218 (440)
326 PF02259 FAT: FAT domain; Int 90.7 11 0.00025 33.3 25.3 66 250-315 144-212 (352)
327 PF13181 TPR_8: Tetratricopept 90.1 0.86 1.9E-05 23.6 4.0 31 425-455 3-33 (34)
328 PF13174 TPR_6: Tetratricopept 89.8 1.1 2.4E-05 22.9 4.2 27 11-37 4-30 (33)
329 PF00637 Clathrin: Region in C 89.8 0.24 5.3E-06 37.1 2.2 54 258-311 13-66 (143)
330 PF07721 TPR_4: Tetratricopept 89.7 0.52 1.1E-05 22.8 2.6 14 431-444 9-22 (26)
331 PF11207 DUF2989: Protein of u 89.6 7.7 0.00017 30.6 10.0 79 87-167 117-198 (203)
332 COG4455 ImpE Protein of avirul 89.5 3.9 8.4E-05 32.5 8.2 76 10-86 4-81 (273)
333 PF07721 TPR_4: Tetratricopept 89.4 0.65 1.4E-05 22.5 2.8 23 9-31 3-25 (26)
334 KOG4648 Uncharacterized conser 89.3 1.4 3E-05 37.5 6.2 91 327-418 102-195 (536)
335 PRK09687 putative lyase; Provi 89.3 13 0.00028 31.7 28.2 136 286-433 141-277 (280)
336 KOG0276 Vesicle coat complex C 89.0 12 0.00025 35.0 11.9 99 193-312 648-746 (794)
337 KOG4570 Uncharacterized conser 88.9 12 0.00026 31.8 11.0 127 153-281 25-164 (418)
338 PF10345 Cohesin_load: Cohesin 88.6 25 0.00054 34.1 35.7 89 298-386 372-482 (608)
339 KOG4642 Chaperone-dependent E3 88.5 12 0.00026 30.4 10.7 81 299-383 22-104 (284)
340 KOG0890 Protein kinase of the 88.3 47 0.001 37.0 32.8 318 117-453 1388-1732(2382)
341 KOG2396 HAT (Half-A-TPR) repea 88.2 20 0.00044 32.7 39.2 89 326-416 464-558 (568)
342 KOG4507 Uncharacterized conser 87.6 2.3 5.1E-05 39.1 6.9 99 332-431 617-718 (886)
343 PRK09687 putative lyase; Provi 87.5 17 0.00037 31.0 27.2 235 39-298 34-278 (280)
344 PF09986 DUF2225: Uncharacteri 87.1 6.7 0.00014 31.7 8.7 24 428-451 170-193 (214)
345 TIGR03504 FimV_Cterm FimV C-te 87.0 1.7 3.8E-05 24.4 3.8 26 393-418 4-29 (44)
346 KOG4648 Uncharacterized conser 86.9 2.6 5.7E-05 35.9 6.4 91 293-386 103-194 (536)
347 TIGR03504 FimV_Cterm FimV C-te 86.8 1.8 3.8E-05 24.4 3.8 24 13-36 5-28 (44)
348 PF08424 NRDE-2: NRDE-2, neces 86.7 21 0.00045 31.2 17.2 99 249-349 16-129 (321)
349 smart00028 TPR Tetratricopepti 86.5 1.9 4E-05 21.3 3.9 29 8-36 2-30 (34)
350 KOG3364 Membrane protein invol 86.1 3.8 8.3E-05 29.7 6.0 65 354-418 29-101 (149)
351 smart00028 TPR Tetratricopepti 86.0 1.4 3E-05 21.9 3.2 27 390-416 3-29 (34)
352 COG4455 ImpE Protein of avirul 85.9 9.7 0.00021 30.4 8.5 56 224-280 8-63 (273)
353 PF09986 DUF2225: Uncharacteri 85.7 14 0.00031 29.9 9.9 29 390-418 167-195 (214)
354 PF13762 MNE1: Mitochondrial s 85.3 13 0.00029 27.6 8.7 83 43-125 40-128 (145)
355 KOG0890 Protein kinase of the 84.7 74 0.0016 35.7 26.6 150 82-241 1388-1542(2382)
356 PF06552 TOM20_plant: Plant sp 84.3 17 0.00037 28.1 10.9 40 304-351 97-136 (186)
357 PRK15180 Vi polysaccharide bio 84.2 33 0.00071 31.2 30.0 126 14-142 296-421 (831)
358 PF07163 Pex26: Pex26 protein; 84.1 20 0.00044 30.0 9.9 56 189-244 90-145 (309)
359 PF04097 Nic96: Nup93/Nic96; 83.8 44 0.00096 32.4 17.5 43 117-160 116-158 (613)
360 PF07163 Pex26: Pex26 protein; 83.7 25 0.00054 29.5 13.4 129 5-135 33-181 (309)
361 PF10579 Rapsyn_N: Rapsyn N-te 83.7 3.8 8.3E-05 26.4 4.6 45 19-63 18-64 (80)
362 PF07575 Nucleopor_Nup85: Nup8 83.5 44 0.00094 32.2 20.3 76 272-349 390-465 (566)
363 KOG4077 Cytochrome c oxidase, 83.2 12 0.00025 26.9 7.1 43 272-314 69-111 (149)
364 KOG4077 Cytochrome c oxidase, 83.2 5.2 0.00011 28.5 5.5 43 409-451 70-112 (149)
365 TIGR02508 type_III_yscG type I 83.1 12 0.00027 25.5 7.2 76 338-418 21-98 (115)
366 KOG2063 Vacuolar assembly/sort 83.1 55 0.0012 32.9 23.6 62 10-71 310-375 (877)
367 PRK11619 lytic murein transgly 82.9 49 0.0011 32.3 38.3 250 83-349 105-373 (644)
368 COG3947 Response regulator con 82.7 28 0.00061 29.4 15.3 175 268-451 149-341 (361)
369 PF14561 TPR_20: Tetratricopep 82.3 13 0.00027 25.1 7.7 52 41-92 21-73 (90)
370 KOG2066 Vacuolar assembly/sort 82.1 52 0.0011 32.1 29.7 103 13-124 362-467 (846)
371 PF14853 Fis1_TPR_C: Fis1 C-te 82.0 4 8.8E-05 24.1 4.1 37 391-429 4-40 (53)
372 KOG1464 COP9 signalosome, subu 82.0 28 0.00061 28.9 18.4 207 107-313 21-257 (440)
373 PF10579 Rapsyn_N: Rapsyn N-te 81.8 4.4 9.6E-05 26.2 4.4 46 400-445 18-65 (80)
374 PF08424 NRDE-2: NRDE-2, neces 81.2 37 0.0008 29.7 16.6 98 285-384 17-129 (321)
375 PRK12798 chemotaxis protein; R 81.0 41 0.00089 30.2 20.6 153 265-417 125-286 (421)
376 COG5159 RPN6 26S proteasome re 80.9 33 0.00071 28.9 13.1 34 393-426 130-167 (421)
377 COG3947 Response regulator con 80.7 34 0.00073 29.0 16.0 70 255-325 282-356 (361)
378 PF13929 mRNA_stabil: mRNA sta 80.5 34 0.00074 28.9 18.0 116 197-312 143-263 (292)
379 KOG2471 TPR repeat-containing 79.7 50 0.0011 30.3 14.7 40 19-58 29-68 (696)
380 PF13929 mRNA_stabil: mRNA sta 79.6 37 0.0008 28.7 16.0 60 110-169 200-260 (292)
381 PF14689 SPOB_a: Sensor_kinase 79.2 7.2 0.00016 24.0 4.7 26 390-415 25-50 (62)
382 PF09670 Cas_Cas02710: CRISPR- 79.1 48 0.001 29.8 12.1 56 260-316 139-198 (379)
383 KOG1586 Protein required for f 78.8 34 0.00074 27.9 17.5 169 165-357 3-189 (288)
384 KOG0545 Aryl-hydrocarbon recep 78.6 34 0.00074 28.1 9.2 98 322-419 178-295 (329)
385 KOG1308 Hsp70-interacting prot 76.8 3.3 7.2E-05 35.4 3.5 87 335-422 127-216 (377)
386 cd00280 TRFH Telomeric Repeat 76.3 26 0.00056 27.3 7.7 22 84-105 118-139 (200)
387 PF10366 Vps39_1: Vacuolar sor 75.9 22 0.00048 25.0 6.9 28 389-416 40-67 (108)
388 PF11846 DUF3366: Domain of un 75.7 17 0.00037 28.8 7.3 29 387-415 143-171 (193)
389 PF12862 Apc5: Anaphase-promot 75.1 20 0.00044 24.3 6.6 24 394-417 47-70 (94)
390 PF07575 Nucleopor_Nup85: Nup8 74.5 85 0.0018 30.3 19.6 76 237-314 390-465 (566)
391 KOG2066 Vacuolar assembly/sort 74.4 91 0.002 30.6 25.4 60 372-436 636-703 (846)
392 COG2909 MalT ATP-dependent tra 74.1 1E+02 0.0022 30.9 32.0 227 156-382 424-684 (894)
393 KOG0686 COP9 signalosome, subu 72.8 71 0.0015 28.6 15.2 63 113-175 151-215 (466)
394 PF14689 SPOB_a: Sensor_kinase 72.7 13 0.00028 22.9 4.6 48 403-452 5-52 (62)
395 COG0790 FOG: TPR repeat, SEL1 72.6 61 0.0013 27.8 21.9 85 229-319 53-145 (292)
396 KOG2063 Vacuolar assembly/sort 72.6 1.1E+02 0.0025 30.9 17.9 39 121-159 600-638 (877)
397 PF09670 Cas_Cas02710: CRISPR- 72.2 75 0.0016 28.6 11.5 57 14-71 138-198 (379)
398 KOG4507 Uncharacterized conser 72.0 29 0.00063 32.5 8.3 151 40-193 569-721 (886)
399 PRK10941 hypothetical protein; 70.2 67 0.0014 27.2 9.7 53 365-417 189-244 (269)
400 COG1747 Uncharacterized N-term 69.4 97 0.0021 28.8 30.9 63 111-176 65-127 (711)
401 PRK10941 hypothetical protein; 68.7 46 0.001 28.1 8.4 62 391-453 184-245 (269)
402 PF00244 14-3-3: 14-3-3 protei 67.8 70 0.0015 26.5 10.0 59 257-315 6-65 (236)
403 KOG4567 GTPase-activating prot 66.7 83 0.0018 27.0 9.2 72 97-173 263-344 (370)
404 COG5108 RPO41 Mitochondrial DN 66.1 52 0.0011 31.5 8.7 75 12-89 33-115 (1117)
405 PF11817 Foie-gras_1: Foie gra 65.9 39 0.00085 28.2 7.6 55 392-446 182-241 (247)
406 PHA02875 ankyrin repeat protei 65.9 1.1E+02 0.0023 28.0 12.1 12 340-351 298-309 (413)
407 KOG0551 Hsp90 co-chaperone CNS 65.5 43 0.00094 29.0 7.5 94 322-415 81-180 (390)
408 PF00244 14-3-3: 14-3-3 protei 65.2 79 0.0017 26.2 10.7 60 11-70 5-65 (236)
409 COG0735 Fur Fe2+/Zn2+ uptake r 63.9 60 0.0013 24.4 7.8 60 66-126 10-69 (145)
410 PF14853 Fis1_TPR_C: Fis1 C-te 63.5 29 0.00062 20.6 5.4 24 363-386 7-30 (53)
411 PF10255 Paf67: RNA polymerase 63.2 1.2E+02 0.0026 27.6 10.5 59 324-382 124-189 (404)
412 PF13762 MNE1: Mitochondrial s 62.7 63 0.0014 24.2 10.3 98 68-165 28-133 (145)
413 PF10255 Paf67: RNA polymerase 62.6 45 0.00098 30.1 7.6 95 321-415 74-191 (404)
414 PRK10564 maltose regulon perip 62.2 20 0.00043 30.5 5.0 38 290-327 260-297 (303)
415 COG0735 Fur Fe2+/Zn2+ uptake r 62.1 63 0.0014 24.3 7.3 25 294-318 27-51 (145)
416 PF11846 DUF3366: Domain of un 61.5 48 0.001 26.3 7.1 32 319-350 141-172 (193)
417 KOG2297 Predicted translation 61.1 1.1E+02 0.0023 26.3 21.3 18 254-271 323-340 (412)
418 PF11817 Foie-gras_1: Foie gra 61.0 54 0.0012 27.3 7.6 21 328-348 184-204 (247)
419 TIGR02508 type_III_yscG type I 59.9 55 0.0012 22.6 8.4 50 87-142 49-98 (115)
420 PF12862 Apc5: Anaphase-promot 59.7 52 0.0011 22.3 8.1 19 366-384 50-68 (94)
421 PF14561 TPR_20: Tetratricopep 59.6 52 0.0011 22.2 8.0 52 387-438 21-73 (90)
422 PF11848 DUF3368: Domain of un 59.4 32 0.0007 19.8 5.1 31 299-329 14-44 (48)
423 PHA02875 ankyrin repeat protei 58.9 1.4E+02 0.003 27.3 10.6 140 15-170 7-155 (413)
424 PF13934 ELYS: Nuclear pore co 58.8 1E+02 0.0022 25.3 13.2 140 303-448 26-165 (226)
425 smart00386 HAT HAT (Half-A-TPR 58.2 22 0.00048 17.5 4.2 29 21-50 1-29 (33)
426 PF10366 Vps39_1: Vacuolar sor 58.1 31 0.00068 24.2 4.8 27 44-70 41-67 (108)
427 PF11663 Toxin_YhaV: Toxin wit 57.7 15 0.00034 26.7 3.2 31 89-121 107-137 (140)
428 KOG4642 Chaperone-dependent E3 57.6 1.1E+02 0.0024 25.3 11.3 81 194-278 22-104 (284)
429 KOG1308 Hsp70-interacting prot 57.1 9.2 0.0002 32.9 2.4 93 55-149 127-219 (377)
430 KOG4279 Serine/threonine prote 57.0 2.1E+02 0.0045 28.3 15.1 20 398-417 376-395 (1226)
431 PF09454 Vps23_core: Vps23 cor 56.8 46 0.001 20.8 5.2 49 5-54 6-54 (65)
432 KOG1839 Uncharacterized protei 56.7 1.8E+02 0.0039 30.7 11.2 149 262-410 942-1121(1236)
433 PF12926 MOZART2: Mitotic-spin 56.1 58 0.0013 21.7 8.1 42 63-104 29-70 (88)
434 cd00280 TRFH Telomeric Repeat 56.0 98 0.0021 24.3 7.8 22 329-350 118-139 (200)
435 KOG4567 GTPase-activating prot 55.9 1.3E+02 0.0029 25.8 9.5 44 307-350 263-306 (370)
436 COG0790 FOG: TPR repeat, SEL1 55.2 1.4E+02 0.0029 25.7 23.7 151 193-352 52-221 (292)
437 cd08819 CARD_MDA5_2 Caspase ac 54.6 62 0.0014 21.6 6.7 13 126-138 50-62 (88)
438 COG4976 Predicted methyltransf 54.2 32 0.0007 27.9 4.7 54 366-419 4-60 (287)
439 KOG0376 Serine-threonine phosp 53.2 28 0.0006 31.7 4.7 50 366-415 47-99 (476)
440 PF04090 RNA_pol_I_TF: RNA pol 53.2 1.1E+02 0.0024 24.4 7.5 63 8-70 42-104 (199)
441 COG4259 Uncharacterized protei 53.0 53 0.0011 22.5 4.8 29 387-415 71-99 (121)
442 KOG0128 RNA-binding protein SA 52.5 2.5E+02 0.0055 28.0 35.4 97 6-105 112-218 (881)
443 PF11663 Toxin_YhaV: Toxin wit 52.3 14 0.0003 27.0 2.3 31 54-86 107-137 (140)
444 PRK10564 maltose regulon perip 51.8 44 0.00095 28.5 5.4 30 150-179 260-289 (303)
445 KOG0686 COP9 signalosome, subu 51.3 1.9E+02 0.0041 26.2 14.5 160 148-315 151-332 (466)
446 KOG2396 HAT (Half-A-TPR) repea 50.6 2.2E+02 0.0047 26.6 40.4 95 354-450 456-557 (568)
447 PRK13800 putative oxidoreducta 50.6 3.1E+02 0.0067 28.5 30.4 154 249-416 725-880 (897)
448 KOG2581 26S proteasome regulat 50.5 1.9E+02 0.0042 26.1 11.2 141 316-456 118-280 (493)
449 PF15297 CKAP2_C: Cytoskeleton 50.3 1.8E+02 0.0039 25.6 9.0 47 388-434 140-186 (353)
450 KOG0292 Vesicle coat complex C 49.8 2.7E+02 0.0059 28.2 10.6 28 286-313 671-698 (1202)
451 KOG0376 Serine-threonine phosp 49.8 82 0.0018 28.9 7.0 110 11-124 8-117 (476)
452 KOG1839 Uncharacterized protei 49.4 3.4E+02 0.0074 28.8 11.8 102 74-175 970-1085(1236)
453 PF04190 DUF410: Protein of un 48.1 1.7E+02 0.0037 24.7 17.8 28 356-383 89-116 (260)
454 PF09454 Vps23_core: Vps23 cor 48.0 47 0.001 20.7 3.9 44 321-365 7-50 (65)
455 COG5108 RPO41 Mitochondrial DN 47.6 1.8E+02 0.0038 28.3 8.9 75 47-124 33-115 (1117)
456 KOG4521 Nuclear pore complex, 47.4 3.7E+02 0.0079 28.4 15.0 120 325-445 986-1124(1480)
457 KOG0530 Protein farnesyltransf 47.0 1.8E+02 0.0038 24.6 19.2 47 305-352 131-177 (318)
458 PF08311 Mad3_BUB1_I: Mad3/BUB 47.0 1.1E+02 0.0024 22.3 9.1 43 406-448 81-124 (126)
459 cd08819 CARD_MDA5_2 Caspase ac 46.9 86 0.0019 21.0 7.1 35 334-373 48-82 (88)
460 KOG0545 Aryl-hydrocarbon recep 46.9 1.7E+02 0.0037 24.4 9.4 107 287-394 178-301 (329)
461 PRK09857 putative transposase; 46.2 2E+02 0.0042 24.9 9.5 66 80-146 209-274 (292)
462 PRK11639 zinc uptake transcrip 46.0 1.2E+02 0.0027 23.4 6.9 57 348-405 17-77 (169)
463 KOG0292 Vesicle coat complex C 45.6 3.4E+02 0.0075 27.5 11.0 72 228-314 654-725 (1202)
464 cd07153 Fur_like Ferric uptake 45.5 70 0.0015 22.7 5.2 41 397-437 9-49 (116)
465 KOG3364 Membrane protein invol 45.2 1.3E+02 0.0027 22.4 9.9 67 75-141 30-100 (149)
466 KOG4814 Uncharacterized conser 44.9 2.2E+02 0.0048 27.5 9.0 93 357-450 354-455 (872)
467 COG5159 RPN6 26S proteasome re 44.2 2E+02 0.0044 24.5 21.8 31 118-148 9-39 (421)
468 cd07153 Fur_like Ferric uptake 43.8 51 0.0011 23.4 4.3 45 49-93 7-51 (116)
469 PF04190 DUF410: Protein of un 43.8 2E+02 0.0043 24.3 18.6 25 146-170 89-113 (260)
470 PF04910 Tcf25: Transcriptiona 42.9 2.5E+02 0.0054 25.2 19.8 103 294-398 110-234 (360)
471 PRK12798 chemotaxis protein; R 42.8 2.6E+02 0.0057 25.4 22.7 156 160-316 125-286 (421)
472 PF07720 TPR_3: Tetratricopept 42.2 55 0.0012 17.4 4.2 20 391-410 4-23 (36)
473 PF02847 MA3: MA3 domain; Int 42.1 1.2E+02 0.0026 21.3 7.1 60 11-72 6-67 (113)
474 PF02184 HAT: HAT (Half-A-TPR) 41.8 51 0.0011 17.1 2.7 26 403-430 2-27 (32)
475 PHA02537 M terminase endonucle 41.4 1.7E+02 0.0038 24.1 7.2 25 294-318 90-114 (230)
476 PF09868 DUF2095: Uncharacteri 41.2 1.2E+02 0.0025 21.5 5.2 25 48-72 67-91 (128)
477 PF01475 FUR: Ferric uptake re 40.7 73 0.0016 22.8 4.7 46 393-438 12-57 (120)
478 PF02607 B12-binding_2: B12 bi 40.6 66 0.0014 20.8 4.1 39 399-437 12-50 (79)
479 PF09477 Type_III_YscG: Bacter 38.8 1.4E+02 0.003 21.0 10.2 17 159-175 81-97 (116)
480 PF08311 Mad3_BUB1_I: Mad3/BUB 38.7 1.5E+02 0.0033 21.5 9.5 43 340-382 81-124 (126)
481 COG5191 Uncharacterized conser 38.3 1.5E+02 0.0032 25.7 6.4 66 5-71 105-171 (435)
482 PF01475 FUR: Ferric uptake re 38.2 55 0.0012 23.4 3.7 48 46-93 11-58 (120)
483 PF10516 SHNi-TPR: SHNi-TPR; 38.0 69 0.0015 17.4 3.7 28 8-35 2-29 (38)
484 PRK13342 recombination factor 37.8 3.3E+02 0.0071 25.0 18.7 22 231-252 244-265 (413)
485 COG4976 Predicted methyltransf 36.0 86 0.0019 25.7 4.5 58 331-389 4-61 (287)
486 KOG2422 Uncharacterized conser 35.9 4E+02 0.0087 25.5 18.1 154 160-314 251-446 (665)
487 PHA02537 M terminase endonucle 35.5 2.5E+02 0.0055 23.1 11.2 17 402-418 192-208 (230)
488 KOG3677 RNA polymerase I-assoc 35.4 2.8E+02 0.0061 25.2 7.8 211 11-223 205-425 (525)
489 KOG2422 Uncharacterized conser 35.3 4.1E+02 0.0089 25.5 17.3 54 261-314 351-405 (665)
490 PF11768 DUF3312: Protein of u 35.2 3.1E+02 0.0067 26.0 8.4 57 361-417 412-473 (545)
491 PF10475 DUF2450: Protein of u 34.7 3E+02 0.0065 23.7 10.1 52 153-210 104-155 (291)
492 PRK09462 fur ferric uptake reg 34.7 2E+02 0.0043 21.6 8.0 35 92-126 32-66 (148)
493 PF07827 KNTase_C: KNTase C-te 34.0 1.6E+02 0.0036 21.8 5.3 56 391-449 62-117 (143)
494 PF11838 ERAP1_C: ERAP1-like C 33.5 3.2E+02 0.007 23.8 18.6 241 189-433 45-320 (324)
495 PF02847 MA3: MA3 domain; Int 33.3 1.4E+02 0.003 20.9 5.1 21 293-313 8-28 (113)
496 PRK13342 recombination factor 33.0 3.9E+02 0.0085 24.5 19.8 26 196-221 244-269 (413)
497 PF12796 Ank_2: Ankyrin repeat 32.8 1.4E+02 0.0031 19.5 5.4 11 18-28 5-15 (89)
498 PRK11639 zinc uptake transcrip 32.5 2.4E+02 0.0052 21.9 7.4 46 47-92 30-75 (169)
499 PF10475 DUF2450: Protein of u 32.4 3.3E+02 0.0071 23.5 12.7 117 258-386 104-226 (291)
500 KOG3824 Huntingtin interacting 31.1 1.6E+02 0.0034 25.4 5.5 51 367-417 126-179 (472)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-66 Score=494.46 Aligned_cols=449 Identities=18% Similarity=0.242 Sum_probs=341.1
Q ss_pred CCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHH
Q 012804 4 KLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSL 83 (456)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (456)
.||..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+
T Consensus 434 ~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 36777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh--CCCCCChhHHHHHHHHHHhcC
Q 012804 84 IAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMIC--GDLTPCTATFNIMLNGLCKNR 161 (456)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~ 161 (456)
|.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 777777777777777777777777777777777777777777777777777777765 466777777777777777777
Q ss_pred ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHH
Q 012804 162 YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 241 (456)
Q Consensus 162 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 241 (456)
++++|.++|+.|.+.|++|+..+|+.++.+|++.|++++|.++|+.|...|+.||..+|+.++.+|.+.|++++|.++++
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC
Q 012804 242 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 321 (456)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 321 (456)
.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.++.||..+|+.+|.+|++.|++++|.++|++|...|+.||
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CC-------------------CHHHHHH
Q 012804 322 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK----DG-------------------KIDHAIN 378 (456)
Q Consensus 322 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g-------------------~~~~a~~ 378 (456)
..+|+.++.+|++.|+++.|.+++.+|.+.|+.||..+|+.++..|.+ ++ ..+.|..
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence 777777777777777777777777777777777777777777655321 11 1355777
Q ss_pred HHHHhccC----ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhccc
Q 012804 379 VFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 454 (456)
Q Consensus 379 ~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 454 (456)
+|++|... +..+|+.++.++...+....+..+++.+...+..|+..+|+.++.++.+. .++|..++++|.+.++
T Consensus 834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGV 911 (1060)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCC
Confidence 77777665 66777777766667777777777777776666667777777777776322 3567777777777664
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7e-66 Score=491.06 Aligned_cols=443 Identities=17% Similarity=0.275 Sum_probs=336.1
Q ss_pred chHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 012804 6 STRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIA 85 (456)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (456)
+...++.++..|.+.|.+++|+.+|+.|. .|+..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.
T Consensus 405 ~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~ 480 (1060)
T PLN03218 405 DKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIS 480 (1060)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 33344444444444444444444444442 26777778888888888888888888888887777788888888888
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHH
Q 012804 86 GATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDN 165 (456)
Q Consensus 86 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 165 (456)
+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++
T Consensus 481 ~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~de 560 (1060)
T PLN03218 481 TCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDR 560 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 88888888888888888887777778888888888888888888888888888777777888888888888888888888
Q ss_pred HHHHHHHHHh--CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 012804 166 ALRMFRGLQK--HGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 243 (456)
Q Consensus 166 a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 243 (456)
|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.++.|+..+|+.++.+|++.|++++|.++|++|
T Consensus 561 A~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM 640 (1060)
T PLN03218 561 AFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM 640 (1060)
T ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 8888888765 46777888888888888888888888888888888777778888888888888888888888888888
Q ss_pred HHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHH
Q 012804 244 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 323 (456)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 323 (456)
.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.|+..
T Consensus 641 ~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvv 720 (1060)
T PLN03218 641 KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS 720 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 87777788888888888888888888888888888877777888888888888888888888888888887777778888
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC----ChhhHHHHHHHHH
Q 012804 324 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLC 399 (456)
Q Consensus 324 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~ 399 (456)
+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|.+.|++++|.++|.+|.+. +..+|+.++..|.
T Consensus 721 tyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 721 TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 888888888888888888888888877777888888888888888888888888888877665 6667777765433
Q ss_pred c-----------------------cCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhc
Q 012804 400 K-----------------------AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 452 (456)
Q Consensus 400 ~-----------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 452 (456)
+ .+..++|..+|++|++.|+.||..||..++.++...+..+.+..+++.+...
T Consensus 801 ~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~ 876 (1060)
T PLN03218 801 RRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS 876 (1060)
T ss_pred HHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC
Confidence 1 1123567777888888788888888887777777777777777777766543
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.5e-64 Score=485.99 Aligned_cols=439 Identities=17% Similarity=0.185 Sum_probs=298.1
Q ss_pred CCCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHH
Q 012804 3 GKLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNS 82 (456)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (456)
++||+.+|+.+|.+|.+.|++++|+++|++|...|+.||..+|+.++.+|...+++..+.+++..+.+.|+.||..+|+.
T Consensus 148 ~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ 227 (857)
T PLN03077 148 PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227 (857)
T ss_pred CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhH
Confidence 46889999999999999999999999999999888888888877666666655555555555555555555555555555
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCC
Q 012804 83 LIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRY 162 (456)
Q Consensus 83 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 162 (456)
++.+|++.|+++.|.++|++|.. ||..+|+.++.+|.+.|++++|.++|++|...|+.||..+|+.++.+|++.|+
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~ 303 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Confidence 55555555555555555555542 34555555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Q 012804 163 TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA 242 (456)
Q Consensus 163 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 242 (456)
.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|+.|.. ||..+|+.++.+|.+.|++++|.++|++
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555554432 3444455555555555555555555555
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH-------------------------------HHHH
Q 012804 243 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI-------------------------------VSYN 291 (456)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------------------------~~~~ 291 (456)
|.+.++.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+. .+|+
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~ 459 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWT 459 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHH
Confidence 544444455445444444444444444444444444444444444 4555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 012804 292 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 371 (456)
Q Consensus 292 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 371 (456)
.++.+|++.|+.++|..+|++|.. ++.||..||..++.+|++.|+.+.+.+++..+.+.|+.++..+++.++.+|.++|
T Consensus 460 ~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G 538 (857)
T PLN03077 460 SIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG 538 (857)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC
Confidence 555555555555555555555543 3667777777777777777777777777777777777777778888889999999
Q ss_pred CHHHHHHHHHHhccCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 012804 372 KIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 451 (456)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 451 (456)
++++|.++|+.+ ..|..+|+.++.+|.+.|+.++|.++|++|.+.|+.||..||..++.+|.+.|++++|.++|++|.+
T Consensus 539 ~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~ 617 (857)
T PLN03077 539 RMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE 617 (857)
T ss_pred CHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence 999999999999 7799999999999999999999999999999999999999999999999999999999999999983
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.7e-63 Score=471.01 Aligned_cols=438 Identities=16% Similarity=0.236 Sum_probs=394.5
Q ss_pred CCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHH
Q 012804 4 KLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSL 83 (456)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (456)
+||..+|+.++.+|.+.++++.|.+++..|.+.|..||..+|+.++.+|.+.|+++.|.++|++|. .||..+|+.+
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~l 195 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTI 195 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHH
Confidence 467778888888888888888888888888877777888888888888888888888888888775 3677788888
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCh
Q 012804 84 IAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYT 163 (456)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (456)
+.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++.+.|..+.+.+++..+.+.|+.||..+++.++.+|++.|++
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 275 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCH
Confidence 88888888888888888888887888888888888888888888888888888888888888888999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 012804 164 DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 243 (456)
Q Consensus 164 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 243 (456)
++|.++|+.|.+ +|..+|+.++.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|+++.|.+++..+
T Consensus 276 ~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m 351 (697)
T PLN03081 276 EDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL 351 (697)
T ss_pred HHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 999999999964 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHH
Q 012804 244 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 323 (456)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 323 (456)
.+.|++|+..+++.++.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..
T Consensus 352 ~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~ 427 (697)
T PLN03081 352 IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427 (697)
T ss_pred HHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH
Confidence 9999999999999999999999999999999999964 689999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC-ChhhHHHHHHHHHcc
Q 012804 324 THTILIDGLCKAGNIKGARLHLEYMNK-IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-DSFTYSSMVHNLCKA 401 (456)
Q Consensus 324 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~ 401 (456)
||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|.+.|++++|.++++++... +..+|+.++.+|...
T Consensus 428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~ 507 (697)
T PLN03081 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIH 507 (697)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999976 589999999999999999999999999999998654 889999999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhccc
Q 012804 402 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 454 (456)
Q Consensus 402 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 454 (456)
|+++.|..+++++.+.++. +..+|..++..|.+.|++++|.+++++|++.++
T Consensus 508 g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 508 KNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred CCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999855422 577999999999999999999999999999875
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.3e-62 Score=461.73 Aligned_cols=435 Identities=19% Similarity=0.240 Sum_probs=417.4
Q ss_pred chHHHHHHHHHHHhhCcHHHHHHHHHHHHhcC-CCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHH
Q 012804 6 STRLLNICVCTFCKANRLEKAEAIIIDGIRLG-VLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLI 84 (456)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 84 (456)
+...|+.+|..+.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 45589999999999999999999999998765 67899999999999999999999999999999999999999999999
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChH
Q 012804 85 AGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTD 164 (456)
Q Consensus 85 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (456)
..|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|..+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 999999999999999999975 7999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 012804 165 NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK 244 (456)
Q Consensus 165 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 244 (456)
.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|+.|.. +|..+|+.++.+|.+.|++++|.++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999964 689999999999999999999999999999
Q ss_pred HcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHh
Q 012804 245 RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 324 (456)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 324 (456)
+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|.+ ||..+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999964 68899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC-----ChhhHHHHHHHHH
Q 012804 325 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLC 399 (456)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~ 399 (456)
|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|.+++|.++|+.|.+. +..+|+.++.+|.
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999753 6779999999999
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhcccC
Q 012804 400 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 455 (456)
Q Consensus 400 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 455 (456)
+.|++++|.+++++| +..|+..+|..++.+|...|+++.|..+++++.+..+.
T Consensus 474 r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 474 REGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE 526 (697)
T ss_pred hcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence 999999999999887 68899999999999999999999999999998776553
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.2e-61 Score=467.63 Aligned_cols=439 Identities=20% Similarity=0.257 Sum_probs=354.2
Q ss_pred CCCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHH
Q 012804 3 GKLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNS 82 (456)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (456)
+.||+.+||.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|.+.|+.+.|.+++..|.+.|+.||..+|+.
T Consensus 249 ~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~ 328 (857)
T PLN03077 249 PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS 328 (857)
T ss_pred CCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHH
Confidence 46788889999999999999999999999998888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCC
Q 012804 83 LIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRY 162 (456)
Q Consensus 83 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 162 (456)
++.+|++.|++++|.++|++|.. ||..+|+.++.+|.+.|++++|.++|++|...|+.||..+|+.++.+|++.|+
T Consensus 329 Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~ 404 (857)
T PLN03077 329 LIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD 404 (857)
T ss_pred HHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccch
Confidence 88888888888888888888764 67788888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Q 012804 163 TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA 242 (456)
Q Consensus 163 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 242 (456)
++.|.++++.+.+.|+.|+..+++.|+.+|++.|++++|.++|+.|.+ +|..+|+.++.+|.+.|+.++|..+|++
T Consensus 405 ~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~ 480 (857)
T PLN03077 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQ 480 (857)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888888888888888888888888888888888887777654 3445555555555555555555555555
Q ss_pred HH----------------------------------HcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHH
Q 012804 243 MK----------------------------------RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 288 (456)
Q Consensus 243 ~~----------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 288 (456)
|. +.|+.++..+++.++.+|++.|++++|..+|+.+ .||..
T Consensus 481 m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~ 555 (857)
T PLN03077 481 MLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVV 555 (857)
T ss_pred HHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChh
Confidence 54 3444444444445555555566666666666554 46888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHH
Q 012804 289 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN-KIGFDSNLEAYNCIVDRL 367 (456)
Q Consensus 289 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~ 367 (456)
+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|. +.|+.|+..+|+.++.+|
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 8888888888899999999999999888888999999999999999999999999999988 668888989999999999
Q ss_pred HhCCCHHHHHHHHHHhc-cCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHH
Q 012804 368 GKDGKIDHAINVFESME-VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQ 446 (456)
Q Consensus 368 ~~~g~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 446 (456)
.+.|++++|.+++++|. +++..+|.+|+.+|...|+.+.+....+++.+..+ .+...|..+...|...|+|++|.++.
T Consensus 636 ~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p-~~~~~y~ll~n~ya~~g~~~~a~~vr 714 (857)
T PLN03077 636 GRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDP-NSVGYYILLCNLYADAGKWDEVARVR 714 (857)
T ss_pred HhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CCcchHHHHHHHHHHCCChHHHHHHH
Confidence 99999999999998885 44888899999988888888888888888876643 26677777888899999999999999
Q ss_pred HHHHhcccC
Q 012804 447 SKIRMAKIS 455 (456)
Q Consensus 447 ~~~~~~~~~ 455 (456)
+.|++.++.
T Consensus 715 ~~M~~~g~~ 723 (857)
T PLN03077 715 KTMRENGLT 723 (857)
T ss_pred HHHHHcCCC
Confidence 999887653
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.4e-32 Score=274.00 Aligned_cols=434 Identities=12% Similarity=0.038 Sum_probs=335.9
Q ss_pred CCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHH
Q 012804 4 KLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSL 83 (456)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (456)
|.++.++..+...+...|++++|.+.|+++.+..+ .+...+..+...+...|++++|.+.++.+.+.+ +.+..++..+
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 539 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILAL 539 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 45666777777777777777777777777776553 355566667777777777777777777776653 3456667777
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCh
Q 012804 84 IAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYT 163 (456)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (456)
...+.+.|+.++|...++++...+. .+...+..++..+...|++++|..+++.+.... +.+...|..+..++...|++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 7777777778888877777766543 355666677777888888888888888877654 55677788888888888888
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 012804 164 DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 243 (456)
Q Consensus 164 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 243 (456)
++|...++.+.+.. +.+...+..+...+...|++++|...++++..... .+..++..++..+...|++++|..+++.+
T Consensus 618 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 618 NKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888877653 34566777777888888888888888888776532 35677777788888888888888888888
Q ss_pred HHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHH
Q 012804 244 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 323 (456)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 323 (456)
.+.. +.+...+..+...+...|++++|...++.+...+ |+..++..++.++.+.|++++|...++.+.+.. +.+..
T Consensus 696 ~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~ 771 (899)
T TIGR02917 696 QKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAV 771 (899)
T ss_pred HhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 7765 5566777777888888888888888888888764 344667778888888888888888888887763 34677
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHc
Q 012804 324 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCK 400 (456)
Q Consensus 324 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~ 400 (456)
.+..+...|...|++++|..+|+++.+.. +++..++..++..+...|+ .+|+.+++++... ++..+..++.++..
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE 849 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 88888888888899999999999888764 6677888888888888888 7788888887665 67778888888999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 012804 401 AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 450 (456)
Q Consensus 401 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 450 (456)
.|++++|.+.++++++.++. ++.++..++.++.+.|+.++|.++++++.
T Consensus 850 ~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 850 KGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred cCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99999999999999988755 88888899999999999999999999875
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.5e-31 Score=266.78 Aligned_cols=435 Identities=12% Similarity=0.053 Sum_probs=320.7
Q ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 012804 8 RLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGA 87 (456)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 87 (456)
.....++..+.+.|++++|+.+++.+.+.. +.+..++..+..++...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 432 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 509 (899)
T TIGR02917 432 RADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARID 509 (899)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHH
Confidence 334445555556666666666666655543 2355566667777777777777777777766543 23455566666677
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHH
Q 012804 88 TRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNAL 167 (456)
Q Consensus 88 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 167 (456)
...|++++|.+.++++.+.++ .+..++..+...+.+.|+.++|...++++...+ +.+...+..++..+.+.|++++|.
T Consensus 510 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 587 (899)
T TIGR02917 510 IQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKAL 587 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHH
Confidence 777777777777777766543 256666777777777777777777777776654 455666677777777778888888
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcC
Q 012804 168 RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 247 (456)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 247 (456)
.+++.+.+. .+.+...|..+..++...|++++|...++.+..... .+...+..+..++...|++++|...++++.+..
T Consensus 588 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 588 AILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred HHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 887777665 344667777778888888888888888887766432 255667777777888888888888888877664
Q ss_pred CCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 012804 248 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 327 (456)
Q Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 327 (456)
+.+...+..+...+...|++++|..+++.+...+ +.+...+..+...+...|++++|...++.+...+ |+..++..
T Consensus 666 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~ 741 (899)
T TIGR02917 666 -PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIK 741 (899)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHH
Confidence 5556777777888888888888888888887764 3466777778888888888888888888887753 44467777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCCh
Q 012804 328 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRL 404 (456)
Q Consensus 328 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 404 (456)
++..+...|++++|...++.+.+.. +.+...+..++..|...|++++|.+.|+++... ++.++..++..+...|+
T Consensus 742 l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~- 819 (899)
T TIGR02917 742 LHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD- 819 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-
Confidence 8888888888888888888888763 667788888888888899999999999888765 66778888888888888
Q ss_pred hHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhcccC
Q 012804 405 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 455 (456)
Q Consensus 405 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 455 (456)
.+|+..++++.+..+. ++.++..++.++...|++++|..+++++.+.++.
T Consensus 820 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 820 PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 7799999988876433 6677788888899999999999999999887653
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1e-24 Score=217.96 Aligned_cols=426 Identities=11% Similarity=0.009 Sum_probs=335.1
Q ss_pred HHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCC-CHhHHH-----------
Q 012804 14 VCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISP-DVVTYN----------- 81 (456)
Q Consensus 14 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~----------- 81 (456)
...+...|++++|+..|+++++..+. +...+..+..++.+.|++++|+..|++..+..... ....+.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 45677889999999999999987653 78889999999999999999999999998764221 111121
Q ss_pred -HHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Q 012804 82 -SLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKN 160 (456)
Q Consensus 82 -~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 160 (456)
.....+.+.|++++|++.|+++.+... .+...+..+..++...|++++|++.|+++.+.. +.+...+..+...+. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-h
Confidence 224456789999999999999998753 366777888999999999999999999999775 455666777777764 4
Q ss_pred CChHHHHHHHHHHHhCCCC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCc
Q 012804 161 RYTDNALRMFRGLQKHGFV--------PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 232 (456)
Q Consensus 161 ~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 232 (456)
++.++|+.+++.+...... .....+..+...+...|++++|...|++..+..+. +...+..+...+...|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 6789999888765432100 01223555677888999999999999999886543 66777888999999999
Q ss_pred hhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH---------HHHHHHHHHHHhcCCH
Q 012804 233 YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI---------VSYNTLINLYCKEGKL 303 (456)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~ 303 (456)
+++|...++++.+.. +.+...+..+...+...++.++|...++.+......++. ..+..+...+...|+.
T Consensus 511 ~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 999999999998764 445555555556677889999999999876543222221 1233456778899999
Q ss_pred HHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 012804 304 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 383 (456)
Q Consensus 304 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 383 (456)
++|..+++. .+.+...+..+...+.+.|++++|+..++.+.+.. +.+...+..++..+...|++++|++.++.+
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999872 23466677888899999999999999999999874 667899999999999999999999999988
Q ss_pred ccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-----CHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 012804 384 EVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI-----LKSAQKAVVDGLRHSGCRREAKKIQSKIRM 451 (456)
Q Consensus 384 ~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 451 (456)
... +...+..+..++...|++++|.+++++++...... +...+..++..+...|++++|...|++...
T Consensus 664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 765 56677888999999999999999999998764322 224666778899999999999999998864
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=9.4e-24 Score=211.10 Aligned_cols=343 Identities=9% Similarity=0.010 Sum_probs=243.5
Q ss_pred CCCCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhH----------------HHHHHHHHccCChhHHHHHH
Q 012804 2 FGKLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTY----------------NMLIDAYCQFVSFDAGYTIL 65 (456)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~a~~~~ 65 (456)
+.|.|+..+..++..+.+.|+.++|.+.++++.+..+. +.... ......+...|++++|.+.|
T Consensus 57 ~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~ 135 (1157)
T PRK11447 57 IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASY 135 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHH
Confidence 46778899999999999999999999999999987643 33322 23344678889999999999
Q ss_pred HHHHhCCCCCCHh-HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-
Q 012804 66 NRMREAGISPDVV-TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDL- 143 (456)
Q Consensus 66 ~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 143 (456)
+.+.+.+ +|+.. ............|+.++|++.++++.+..+. +...+..+...+...|+.++|++.++++.....
T Consensus 136 ~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~ 213 (1157)
T PRK11447 136 DKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG 213 (1157)
T ss_pred HHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc
Confidence 9988753 33332 1111222233468899999999999887533 667777888888899999999999888754310
Q ss_pred ---------------C----------------CChhHH---------------------HHHHHHHHhcCChHHHHHHHH
Q 012804 144 ---------------T----------------PCTATF---------------------NIMLNGLCKNRYTDNALRMFR 171 (456)
Q Consensus 144 ---------------~----------------~~~~~~---------------------~~l~~~~~~~~~~~~a~~~~~ 171 (456)
. |+.... ......+...|++++|+..|+
T Consensus 214 ~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~ 293 (1157)
T PRK11447 214 RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQ 293 (1157)
T ss_pred hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHH
Confidence 0 000000 011344567789999999999
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-HHHH------------HHHHHHHHhcCchhHHHH
Q 012804 172 GLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN-AITY------------TTIMKCCFRNRKYKLGLE 238 (456)
Q Consensus 172 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------~~l~~~~~~~~~~~~a~~ 238 (456)
+..+.. +.+...+..+..++.+.|++++|...|++..+...... ...+ ......+...|++++|..
T Consensus 294 ~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~ 372 (1157)
T PRK11447 294 QAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAER 372 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 988763 34677888888999999999999999998877543221 1111 122345678889999999
Q ss_pred HHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHH--------------------------
Q 012804 239 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT-------------------------- 292 (456)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------------------- 292 (456)
.++++.+.. +.+...+..+..++...|++++|++.|+++++.... +...+..
T Consensus 373 ~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~ 450 (1157)
T PRK11447 373 LYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRR 450 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHH
Confidence 999988875 556667777888888899999999999888875322 2222222
Q ss_pred ----------------HHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012804 293 ----------------LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 351 (456)
Q Consensus 293 ----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (456)
+...+...|++++|...+++..+.... +...+..+...+...|++++|...++++.+.
T Consensus 451 ~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 451 SIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 233445678888888888888876422 5667777888888889999999888887764
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=1.4e-24 Score=185.96 Aligned_cols=386 Identities=15% Similarity=0.112 Sum_probs=301.5
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHh-HHHHHH
Q 012804 42 VVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWS-YNSLMH 120 (456)
Q Consensus 42 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~ 120 (456)
..+|..+.+++-..|+++.|+.+++.+.+.. +..+..|..+..++...|+.+.|.+.|.+.++.+ |+... ...+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhH
Confidence 3467778888888888999999988888763 2357788888888888899999988888888753 44333 334555
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHHcCCHH
Q 012804 121 CLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE-LVTYNILIKGLCKAGRLR 199 (456)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 199 (456)
.+...|+.++|...|.+.++.. +--...|+.|...+-..|+...|+..|++..+. .|+ ...|-.|...|...+.++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence 5666788888888888888764 344677888888888899999999999988875 343 567888888898999999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 012804 200 TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 279 (456)
Q Consensus 200 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 279 (456)
+|...|.+.....+ .....+..+...|...|+.+.|+..+++.++.. |--+..|+.+..++-..|++.+|.+.+.+.+
T Consensus 270 ~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 270 RAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 99998888776432 256677778888888999999999999998875 4456788999999999999999999999988
Q ss_pred HCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H
Q 012804 280 TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD-KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN-L 357 (456)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~ 357 (456)
..... .....+.|...|...|.+++|..+|....+- .|. ...++.|...|-..|++++|+..++++++. .|+ .
T Consensus 348 ~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fA 422 (966)
T KOG4626|consen 348 RLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFA 422 (966)
T ss_pred HhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHH
Confidence 87433 5677888999999999999999999888774 333 456888888899999999999999998874 555 6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhccCC---hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 012804 358 EAYNCIVDRLGKDGKIDHAINVFESMEVKD---SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 434 (456)
Q Consensus 358 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 434 (456)
..++.+...|...|+.+.|++.+.+++..+ .+.++.|...|...|+..+|+..++++++..+. -+..+..++.++.
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD-fpdA~cNllh~lq 501 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD-FPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC-CchhhhHHHHHHH
Confidence 788888899999999999999999888774 457788899999999999999999999866332 2345555555544
Q ss_pred ccCChHH
Q 012804 435 HSGCRRE 441 (456)
Q Consensus 435 ~~g~~~~ 441 (456)
-..+|.+
T Consensus 502 ~vcdw~D 508 (966)
T KOG4626|consen 502 IVCDWTD 508 (966)
T ss_pred HHhcccc
Confidence 3333333
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=2.2e-24 Score=184.91 Aligned_cols=434 Identities=13% Similarity=0.010 Sum_probs=353.1
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 012804 9 LLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGAT 88 (456)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 88 (456)
.-..|.....+.|++++|++--...-+.++. +....-.+-..+.+..+.+....--....+.. +.-..+|..+...+.
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 3456677788899999999977766555533 44444445566777777777665555444442 345778999999999
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhcCChHHHH
Q 012804 89 RNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCT-ATFNIMLNGLCKNRYTDNAL 167 (456)
Q Consensus 89 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~ 167 (456)
..|+++.|+.+++.+++...+ ....|..+..++...|+.+.|.+.|.+.++.+ |+. ...+.+...+-..|++.+|.
T Consensus 128 erg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhH
Confidence 999999999999999987544 78889999999999999999999999998764 433 33444556666789999999
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcC
Q 012804 168 RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 247 (456)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 247 (456)
..+.+..+.. +--...|+.|...+..+|+...|+..|++..+..+. -...|..|...|...+.++.|...+.+.....
T Consensus 205 ~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 205 ACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 9998887762 224567888999999999999999999998875332 35678889999999999999999999998775
Q ss_pred CCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 012804 248 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 327 (456)
Q Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 327 (456)
+-....+..+...|...|.++.|++.+++.++..+. =+..|+.+..++...|+..+|...+........ ......+.
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-~hadam~N 359 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCP-NHADAMNN 359 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-ccHHHHHH
Confidence 556777888888899999999999999999987433 467899999999999999999999999988643 35678899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCCh
Q 012804 328 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRL 404 (456)
Q Consensus 328 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 404 (456)
|...+...|.++.|..+|....+.. +--....+.|...|-..|++++|+..++++... -..+++.++..|...|+.
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH
Confidence 9999999999999999999998752 333677889999999999999999999998876 456788999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhccc
Q 012804 405 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 454 (456)
Q Consensus 405 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 454 (456)
+.|++.+.+++..++. -...+..++..|..+|+..+|+.-++...+.++
T Consensus 439 ~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 9999999999866432 457788899999999999999999998877654
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.95 E-value=2.6e-22 Score=188.83 Aligned_cols=426 Identities=14% Similarity=-0.001 Sum_probs=227.0
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 012804 9 LLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGAT 88 (456)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 88 (456)
.+......+.+.|++++|+..|+++++.. |+...|..+..+|.+.|++++|++.++...+.+ +.+...+..+..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 35567788899999999999999988754 567788888999999999999999999988864 335678888899999
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHH
Q 012804 89 RNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALR 168 (456)
Q Consensus 89 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 168 (456)
..|++++|+..+..+...+...+.. ...++..+.. ..+........... +++...+..+...+ ..........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchh
Confidence 9999999998887665543221221 1112221111 12222222222221 22222222221111 1111111111
Q ss_pred HHHHHHhCCCCCc-HHHHHHHHHH---HHHcCCHHHHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCchhHHHHHHHH
Q 012804 169 MFRGLQKHGFVPE-LVTYNILIKG---LCKAGRLRTARWILKELGDSG-HAP-NAITYTTIMKCCFRNRKYKLGLEILSA 242 (456)
Q Consensus 169 ~~~~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 242 (456)
-+....+. .+. ...+..+... ....+++++|...|+.....+ ..| ....+..+...+...|++++|...++.
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11111110 000 0000111000 012345566666666555432 111 233445555555556666666666666
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH
Q 012804 243 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 322 (456)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 322 (456)
..+.. +.....+..+..++...|++++|...++++++.+. .+...+..+...+...|++++|...|++..+... .+.
T Consensus 357 al~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~ 433 (615)
T TIGR00990 357 SIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFI 433 (615)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCH
Confidence 65543 33344555555556666666666666666655432 2455555566666666666666666666655421 234
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccCChh---h-------HH
Q 012804 323 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF---T-------YS 392 (456)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~-------~~ 392 (456)
..+..+...+.+.|++++|+..++...+. .+.+...+..+...+...|++++|++.|+++...++. . +.
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 44555555566666666666666665554 2344555566666666666666666666655443110 0 11
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 012804 393 SMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 451 (456)
Q Consensus 393 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 451 (456)
..+..+...|++++|.++++++++.++. +...+..++.++...|++++|.++|++..+
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 1111222346666666666666554322 334555566666666666666666665543
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1e-20 Score=181.39 Aligned_cols=216 Identities=11% Similarity=-0.026 Sum_probs=157.0
Q ss_pred CchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012804 231 RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 310 (456)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 310 (456)
+++++|...+.+..... |+......+...+...|++++|...++++... +|+...+..+..++.+.|++++|...+
T Consensus 490 ~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34444555555444442 33322223334445778888888888776554 333444556667777888888888888
Q ss_pred HHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---C
Q 012804 311 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---D 387 (456)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~ 387 (456)
+...+.. +.....+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|+..++++... +
T Consensus 566 ~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~ 642 (987)
T PRK09782 566 QQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNN 642 (987)
T ss_pred HHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 8887753 223333333444445668999999999988875 456888888889999999999999999988776 6
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhccc
Q 012804 388 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 454 (456)
Q Consensus 388 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 454 (456)
+..+..+..++...|++++|++.++++++..+. ++..+..++.++...|++++|+..+++..+..+
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 778888888999999999999999999887543 778888999999999999999999999877654
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=8.8e-23 Score=182.78 Aligned_cols=297 Identities=15% Similarity=0.137 Sum_probs=167.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHHcCCHH
Q 012804 123 FQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE---LVTYNILIKGLCKAGRLR 199 (456)
Q Consensus 123 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 199 (456)
...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|...|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34444444444444444432 22333444444444444444444444444443311111 123444445555555555
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcC----hhhHHHHHHHHHHcCChHHHHHHH
Q 012804 200 TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD----GFGYCTVIAAFVKIGRLKEATDYM 275 (456)
Q Consensus 200 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 275 (456)
+|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+...|++++|...+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5555555554431 12344445555555555555555555555544321111 112334555566677777777777
Q ss_pred HHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 012804 276 EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 355 (456)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 355 (456)
+++.+... .+...+..+...+.+.|++++|.+.++++...+......++..++.+|...|++++|...++.+.+. .|
T Consensus 204 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 204 KKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 77766432 2455666667777777777777777777766432222345666777777777777777777777665 34
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHhccC--ChhhHHHHHHHHHc---cCChhHHHHHHHHHHHcCCCCCHH
Q 012804 356 NLEAYNCIVDRLGKDGKIDHAINVFESMEVK--DSFTYSSMVHNLCK---AKRLPSASKLLLSCLKSGVRILKS 424 (456)
Q Consensus 356 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~ 424 (456)
+...+..++..+.+.|++++|.++++++... +...+..++..+.. .|+.++++.+++++++.+++|++.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 5555567777777777777777777776654 44455555555543 457888888888888776666665
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.93 E-value=6.3e-21 Score=182.61 Aligned_cols=405 Identities=11% Similarity=0.027 Sum_probs=230.9
Q ss_pred CCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHH
Q 012804 4 KLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSL 83 (456)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (456)
+.++....-.+......|+.++|+++|....... +.+...+..+..++...|++++|.++|++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3445555556666777788888888887776533 2345567777777778888888888888777652 3345566677
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCh
Q 012804 84 IAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYT 163 (456)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (456)
...+...|++++|...++++.+..+ .+.. +..+..++...|+.++|+..++++.... +.+...+..+...+...+..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCh
Confidence 7777778888888888887777532 2444 6677777777888888888888877764 44555566666777777777
Q ss_pred HHHHHHHHHHHhCCCCCcH------HHHHHHHHHHHH-----cCCH---HHHHHHHHHHhhC-CCCCCHH-HHHHH----
Q 012804 164 DNALRMFRGLQKHGFVPEL------VTYNILIKGLCK-----AGRL---RTARWILKELGDS-GHAPNAI-TYTTI---- 223 (456)
Q Consensus 164 ~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~~l---- 223 (456)
++|+..++.... .|+. .....++..... .+++ ++|+..++.+.+. ...|+.. .+...
T Consensus 167 e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 167 APALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 777777766553 1221 011112222211 1122 4555555555542 1222221 11111
Q ss_pred HHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCcc---CHHHHHHHHHHHHhc
Q 012804 224 MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL---DIVSYNTLINLYCKE 300 (456)
Q Consensus 224 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 300 (456)
+..+...+++++|+..|+.+.+.+.+........+..++...|++++|...|+.+....... .......+..++...
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 22334556666666666666655311011112223455666666666666666665432111 123344445555666
Q ss_pred CCHHHHHHHHHHHHHcCC-----------CcC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012804 301 GKLEAAYLLLDEMEKQGF-----------ECD---KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 366 (456)
Q Consensus 301 ~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 366 (456)
|++++|...++.+..... .|+ ...+..+...+...|++++|+..++++.... |.+...+..++..
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l 402 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASV 402 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 666666666666655321 111 1233344555556666666666666665542 4455566666666
Q ss_pred HHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 012804 367 LGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 417 (456)
Q Consensus 367 ~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 417 (456)
+...|++++|++.++++... +...+...+..+...|++++|+.+++++++.
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 66666666666666665554 3444555555566666666666666666654
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=5.8e-21 Score=178.96 Aligned_cols=361 Identities=12% Similarity=0.035 Sum_probs=258.2
Q ss_pred HHhhCcHHHHHHHHHHHHhcC--CCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChh
Q 012804 17 FCKANRLEKAEAIIIDGIRLG--VLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLS 94 (456)
Q Consensus 17 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 94 (456)
+.++.+++.---+|....+.. -..+..-...++..+.+.|++++|..+++...... +-+...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHH
Confidence 455666665555554433211 01122334556677778888888888888887764 234455556666777788888
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 012804 95 CSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQ 174 (456)
Q Consensus 95 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 174 (456)
.|.+.++++....+. +...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 888888888876433 56677778888888888888888888888764 5566777888888888888888888888776
Q ss_pred hCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhh
Q 012804 175 KHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG 254 (456)
Q Consensus 175 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 254 (456)
.... .+...+..+ ..+...|++++|...++.+......++......+..++...|++++|...++.+.+.. +.+...
T Consensus 172 ~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 6532 233333333 3467788888888888887765433444445555677788888888888888888775 556677
Q ss_pred HHHHHHHHHHcCChHH----HHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHH
Q 012804 255 YCTVIAAFVKIGRLKE----ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 330 (456)
Q Consensus 255 ~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 330 (456)
+..+...+...|++++ |...++++....+. +...+..+...+...|++++|...+++...... .+...+..+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 7778888888888875 78888888876433 677788888888888888888888888887632 24556777788
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC
Q 012804 331 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 386 (456)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (456)
.+...|++++|...++.+...+ +.+...+..+..++...|+.++|.+.|+++...
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8888888888888888887753 223334444566788888888888888887665
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.93 E-value=1.4e-20 Score=180.30 Aligned_cols=417 Identities=12% Similarity=0.006 Sum_probs=317.7
Q ss_pred HHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 012804 27 EAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEM 106 (456)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 106 (456)
+..++. .+.+ ..+.....-.+.+....|+.++|++++....... +.+...+..+...+...|++++|.+++++..+.
T Consensus 2 ~~~~~~-~~~~-~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 2 LSWLRQ-ALKS-ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL 78 (765)
T ss_pred chhhhh-hhcc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555 3333 3466666777888888999999999999998632 445667899999999999999999999999886
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHH
Q 012804 107 GIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYN 186 (456)
Q Consensus 107 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 186 (456)
. +.+...+..+..++...|++++|...++++.... +.+.. +..+..++...|+.++|+..++++.+.. +.+...+.
T Consensus 79 ~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~ 154 (765)
T PRK10049 79 E-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPT 154 (765)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 4 3356777888899999999999999999999875 55666 8888999999999999999999999873 33666667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH------HHHHHHHHHHH-----hcCch---hHHHHHHHHHHHc-CCCcC
Q 012804 187 ILIKGLCKAGRLRTARWILKELGDSGHAPNA------ITYTTIMKCCF-----RNRKY---KLGLEILSAMKRK-GYTFD 251 (456)
Q Consensus 187 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~ 251 (456)
.+..++...+..+.|+..++.+.. .|+. ......+.... ..+++ ++|+..++.+.+. ...|+
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 788888899999999999987664 1211 12222233222 12234 7788888888865 11222
Q ss_pred hh-hHH----HHHHHHHHcCChHHHHHHHHHHHHCCCc-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc---CH
Q 012804 252 GF-GYC----TVIAAFVKIGRLKEATDYMEQMVTDGVQ-LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC---DK 322 (456)
Q Consensus 252 ~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~ 322 (456)
.. .+. ..+..+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|...|+++....... ..
T Consensus 232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~ 310 (765)
T PRK10049 232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSD 310 (765)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCCh
Confidence 21 111 1133456779999999999999987532 332 22235778999999999999999987653221 13
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhCCCHHHHHHHHHHhccC--
Q 012804 323 YTHTILIDGLCKAGNIKGARLHLEYMNKIGF-----------DSN---LEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 386 (456)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 386 (456)
.....+..++...|++++|..+++.+..... .|+ ...+..+...+...|+.++|+++++++...
T Consensus 311 ~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P 390 (765)
T PRK10049 311 EELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP 390 (765)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4567777788999999999999999887521 123 235567788899999999999999998776
Q ss_pred -ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhcccC
Q 012804 387 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 455 (456)
Q Consensus 387 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 455 (456)
++..+..++..+...|++++|++.++++++..+ .+...+...+..+...|++++|...++++.+..+.
T Consensus 391 ~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P-d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 391 GNQGLRIDYASVLQARGWPRAAENELKKAEVLEP-RNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 778899999999999999999999999997753 25677778888999999999999999999887654
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=1.9e-22 Score=180.68 Aligned_cols=303 Identities=14% Similarity=0.091 Sum_probs=226.0
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhc
Q 012804 49 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPD---VWSYNSLMHCLFQL 125 (456)
Q Consensus 49 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 125 (456)
...+...|++++|...|.++.+.+ +.+..++..+...+...|++++|.++++.+......++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344566788888888888888764 33556777888888888888888888888877532211 24567778888888
Q ss_pred CChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcCCHHHH
Q 012804 126 GKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE----LVTYNILIKGLCKAGRLRTA 201 (456)
Q Consensus 126 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a 201 (456)
|++++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+...|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 88888888888887654 55677788888888888888888888888877643322 12345667778888888888
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012804 202 RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 281 (456)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 281 (456)
...++++.+... .+...+..+...+...|++++|.+.++++.+.+......++..++.+|...|++++|...++.+.+.
T Consensus 200 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888876532 2455677777888888888888888888887642223456777888888889999999988888876
Q ss_pred CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHH
Q 012804 282 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK---AGNIKGARLHLEYMNKIGFDSNLE 358 (456)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 358 (456)
. |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++.+.+.++.|++.
T Consensus 279 ~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 Y--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred C--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 3 45556678888888899999999999888775 5777778777766654 457888888888888766655554
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.6e-21 Score=174.36 Aligned_cols=445 Identities=14% Similarity=0.058 Sum_probs=340.0
Q ss_pred CCCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCC--CHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC--Hh
Q 012804 3 GKLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLP--DVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPD--VV 78 (456)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~ 78 (456)
.+.+|.+.+.|.+.|.-.|+++.+..+...+......- -...|..+.+++-..|++++|...|.+..+.. ++ +.
T Consensus 266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l 343 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVL 343 (1018)
T ss_pred cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccc
Confidence 46688899999999999999999999999888764221 23357888999999999999999998887753 33 34
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC----ChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 012804 79 TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLG----KPDEANRVFQDMICGDLTPCTATFNIML 154 (456)
Q Consensus 79 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 154 (456)
.+..+.+.+.+.|+++.+...|+...... +.+..+...|...|...+ ..+.|..++.+..... +.|...|-.+.
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~la 421 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELA 421 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHH
Confidence 45567888999999999999999988864 335666666777777664 4567777777766554 66778888777
Q ss_pred HHHHhcCChHHHHHHHHHHH----hCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC---CCCCCH------HHHH
Q 012804 155 NGLCKNRYTDNALRMFRGLQ----KHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS---GHAPNA------ITYT 221 (456)
Q Consensus 155 ~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~ 221 (456)
..+.....+.. +.+|.... ..+-.+.+...|.+...+...|++..|...|...... ...++. .+-.
T Consensus 422 ql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~Y 500 (1018)
T KOG2002|consen 422 QLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKY 500 (1018)
T ss_pred HHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHH
Confidence 77766554443 66665443 4455577888999999999999999999999887654 112222 2333
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcC
Q 012804 222 TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 301 (456)
Q Consensus 222 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 301 (456)
.+..+.-..++.+.|.+.|..+.+.. |--...|..++......++..+|...+......+ ..++..+..+...+....
T Consensus 501 Nlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 501 NLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKS 578 (1018)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhh
Confidence 45666677789999999999999874 3233344444444445578889999999988763 336777777888899888
Q ss_pred CHHHHHHHHHHHHHc-CCCcCHHhHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012804 302 KLEAAYLLLDEMEKQ-GFECDKYTHTILIDGLCK------------AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 368 (456)
Q Consensus 302 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 368 (456)
.+..|.+-|..+.+. ...+|..+...|...|.. .+..++|+++|.++++.. |.|...-+.++-+++
T Consensus 579 ~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA 657 (1018)
T KOG2002|consen 579 EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLA 657 (1018)
T ss_pred hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhh
Confidence 888888877776543 223577777777776542 245678999999998874 778888899999999
Q ss_pred hCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHccCChHHHHH
Q 012804 369 KDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS-GVRILKSAQKAVVDGLRHSGCRREAKK 444 (456)
Q Consensus 369 ~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 444 (456)
..|++.+|..+|.++.+. ...+|..++.+|...|++..|++.|+.+.+. ....++..+..|+.++.+.|.+.+|.+
T Consensus 658 ~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred hccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999999999999877 5689999999999999999999999999877 555678889999999999999999999
Q ss_pred HHHHHHhcccC
Q 012804 445 IQSKIRMAKIS 455 (456)
Q Consensus 445 ~~~~~~~~~~~ 455 (456)
.+.+.....++
T Consensus 738 ~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 738 ALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHhCCc
Confidence 99888776654
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=2.4e-21 Score=181.59 Aligned_cols=361 Identities=11% Similarity=0.034 Sum_probs=285.6
Q ss_pred HHccCChhHHHHHHHHHHhC--CCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChh
Q 012804 52 YCQFVSFDAGYTILNRMREA--GISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPD 129 (456)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 129 (456)
+.++.+|+..--.|....+. ....+......++..+.+.|++++|..+++........ +...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 44566776655555544332 11123334556677888999999999999999887554 4556666777888899999
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 012804 130 EANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 209 (456)
Q Consensus 130 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 209 (456)
+|.+.++++.... |.+...+..+...+...|++++|...+++.... .+.+...+..+...+...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l-~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA-FSGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 9999999999876 667788888999999999999999999999886 34467788889999999999999999999887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHH
Q 012804 210 DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 289 (456)
Q Consensus 210 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 289 (456)
..... +...+..+ ..+...|++++|...++.+.+....++......+..++...|++++|...++++...+.. +...
T Consensus 172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~ 248 (656)
T PRK15174 172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAAL 248 (656)
T ss_pred HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHH
Confidence 65443 33333333 347888999999999999887753344445555677888999999999999999987543 6788
Q ss_pred HHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012804 290 YNTLINLYCKEGKLEA----AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 365 (456)
Q Consensus 290 ~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 365 (456)
+..+...+...|++++ |...+++..+... .+...+..+...+...|++++|...++++.... +.+...+..+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 8889999999999986 7999999988643 367788899999999999999999999998874 556778888899
Q ss_pred HHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 012804 366 RLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 420 (456)
Q Consensus 366 ~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 420 (456)
++.+.|++++|...++++... +...+..++.++...|++++|.+.|+++++..+.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 999999999999999998866 2333444677889999999999999999877443
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.93 E-value=8.5e-20 Score=171.55 Aligned_cols=442 Identities=9% Similarity=-0.013 Sum_probs=325.2
Q ss_pred hHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 012804 7 TRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAG 86 (456)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (456)
+.+--.-+-...+.|+++.|+..|+++.+..+.-....+ .++..+...|+.++|+..+++.... ..........+...
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~l 111 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARA 111 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHH
Confidence 333333444678999999999999999987654222344 8888888899999999999998821 12223333444668
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHH
Q 012804 87 ATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNA 166 (456)
Q Consensus 87 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 166 (456)
+...|++++|+++|+++.+..+. ++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHH
Confidence 88999999999999999997654 5677778889999999999999999999876 45555554444455456677679
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH------HHHHHHH---H--hcCc---
Q 012804 167 LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITY------TTIMKCC---F--RNRK--- 232 (456)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~---~--~~~~--- 232 (456)
++.++++.+.. +.+...+..+..+..+.|-...|.++..+-... +.+....+ ...+..- . ....
T Consensus 189 L~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 189 LQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 99999999883 446778888889999999999998877653321 11111100 1111100 0 1112
Q ss_pred hhHHHHHHHHHHHc-C-CCcChh----hHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHH
Q 012804 233 YKLGLEILSAMKRK-G-YTFDGF----GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 306 (456)
Q Consensus 233 ~~~a~~~~~~~~~~-~-~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 306 (456)
.+.|+.-++.+... + .|+... ...-.+-++...+++.++++.++.+...+.+....+-..+..+|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 34455555555542 1 122212 22234567788999999999999999887665667888999999999999999
Q ss_pred HHHHHHHHHcC-----CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHH
Q 012804 307 YLLLDEMEKQG-----FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF-----------DSN---LEAYNCIVDRL 367 (456)
Q Consensus 307 ~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~ 367 (456)
..++..+.... ..++......|..++...+++++|..+++.+.+... .|| ......++..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 99999996642 122344457889999999999999999999987311 122 23345567778
Q ss_pred HhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHH
Q 012804 368 GKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 444 (456)
Q Consensus 368 ~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 444 (456)
...|+..+|++.++++... |......+...+...|.+.+|++.++.+....+. +..+....+.++...|++++|..
T Consensus 427 ~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHH
Confidence 8999999999999998766 8899999999999999999999999887766433 66777788899999999999999
Q ss_pred HHHHHHhcccCC
Q 012804 445 IQSKIRMAKISH 456 (456)
Q Consensus 445 ~~~~~~~~~~~~ 456 (456)
+..++.+..+.|
T Consensus 506 ~~~~l~~~~Pe~ 517 (822)
T PRK14574 506 LTDDVISRSPED 517 (822)
T ss_pred HHHHHHhhCCCc
Confidence 998888776653
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=1.5e-19 Score=170.18 Aligned_cols=400 Identities=12% Similarity=-0.013 Sum_probs=276.3
Q ss_pred CchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHH
Q 012804 5 LSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLI 84 (456)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 84 (456)
|++..|..+..+|.+.|++++|+..++.+++.++. +...+..+..++...|++++|+.-|..+...+...+. ....++
T Consensus 158 p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~ 235 (615)
T TIGR00990 158 PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNE-QSAQAV 235 (615)
T ss_pred CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccH-HHHHHH
Confidence 57788999999999999999999999999987643 6778999999999999999999988877654311122 112222
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhHHHHHHHH---HHhc
Q 012804 85 AGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPC-TATFNIMLNG---LCKN 160 (456)
Q Consensus 85 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~---~~~~ 160 (456)
..+.. ..+........+.. +++...+..+.. +...........-+....+. .+. ...+..+... ....
T Consensus 236 ~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~ 307 (615)
T TIGR00990 236 ERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKAD 307 (615)
T ss_pred HHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhccccc--ccccccchHHHHHHHHHhhhh
Confidence 22211 12223333333322 112222222222 22222222222222221111 111 1111111111 1234
Q ss_pred CChHHHHHHHHHHHhCC-C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHH
Q 012804 161 RYTDNALRMFRGLQKHG-F-VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 238 (456)
Q Consensus 161 ~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 238 (456)
+.+++|.+.|+...+.+ . +.....+..+...+...|++++|...+++.....+. ....|..+..++...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHH
Confidence 67889999999988764 2 224556777888888999999999999998875332 45677788888889999999999
Q ss_pred HHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 012804 239 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 318 (456)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 318 (456)
.++.+.+.. +.+...+..+...+...|++++|...|++.+...+. +...+..+..++.+.|++++|+..+++..+..
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~- 463 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF- 463 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 999988775 566788888888999999999999999999887433 66777888888999999999999999988753
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHHhccC---Chh
Q 012804 319 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL------EAYNCIVDRLGKDGKIDHAINVFESMEVK---DSF 389 (456)
Q Consensus 319 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~ 389 (456)
+.+...+..+...+...|++++|...|++........+. ..+...+..+...|++++|.++++++... +..
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~ 543 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI 543 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 335778888889999999999999999998875311111 11122222344568999999999987655 455
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 012804 390 TYSSMVHNLCKAKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 390 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 418 (456)
.+..++.++.+.|++++|++.|+++.+..
T Consensus 544 a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 544 AVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 67888999999999999999999987663
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=5e-18 Score=163.08 Aligned_cols=431 Identities=11% Similarity=0.040 Sum_probs=297.9
Q ss_pred chHHHHHH-HHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHc-cCChhHHHHHHHHHHhCCCCCCHhHHHHH
Q 012804 6 STRLLNIC-VCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQ-FVSFDAGYTILNRMREAGISPDVVTYNSL 83 (456)
Q Consensus 6 ~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (456)
++.+.... .+.|.+.|++++|+.++..+.+.++. +......+..+|.. .++ +.+..+++. ..+.++..+..+
T Consensus 180 ~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~al 253 (987)
T PRK09782 180 EGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITY 253 (987)
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHH
Confidence 44444444 88999999999999999999998754 55666677777777 366 777777553 233577888888
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCC-CCHHhHH------------------------------HHHHHHHhcCChh---
Q 012804 84 IAGATRNSLLSCSLDLLDEMLEMGIP-PDVWSYN------------------------------SLMHCLFQLGKPD--- 129 (456)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~------------------------------~l~~~~~~~~~~~--- 129 (456)
...+.+.|+.++|.++++++...... |...++. .++..+.+.++++
T Consensus 254 a~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (987)
T PRK09782 254 ATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQ 333 (987)
T ss_pred HHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999888886543211 1111110 1123333333333
Q ss_pred ------------------------------------------------------------HHHHHHHHHHhC--CCCCCh
Q 012804 130 ------------------------------------------------------------EANRVFQDMICG--DLTPCT 147 (456)
Q Consensus 130 ------------------------------------------------------------~a~~~~~~~~~~--~~~~~~ 147 (456)
+|.++|+..... +-.++.
T Consensus 334 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 413 (987)
T PRK09782 334 KLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQ 413 (987)
T ss_pred HHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCH
Confidence 333333333221 001112
Q ss_pred hHHHHHHHHHHhcCC---hHHHHHH----------------------HHHHHhC-C-CCC--cHHHHHHHHHHHHHcCCH
Q 012804 148 ATFNIMLNGLCKNRY---TDNALRM----------------------FRGLQKH-G-FVP--ELVTYNILIKGLCKAGRL 198 (456)
Q Consensus 148 ~~~~~l~~~~~~~~~---~~~a~~~----------------------~~~~~~~-~-~~~--~~~~~~~l~~~~~~~~~~ 198 (456)
.....++..|.+.+. ..++..+ ++..... + .++ +...|..+..++.. ++.
T Consensus 414 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~ 492 (987)
T PRK09782 414 TLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLP 492 (987)
T ss_pred HHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCc
Confidence 222344444444433 2222221 1111110 0 123 45566666666665 677
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 012804 199 RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM 278 (456)
Q Consensus 199 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 278 (456)
++|...+.+..... |+......+...+...|++++|...++++... +|+...+..+..++.+.|++++|...++..
T Consensus 493 ~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qA 568 (987)
T PRK09782 493 GVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQA 568 (987)
T ss_pred HHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 78888777766543 55444444555667899999999999998665 444555667778889999999999999999
Q ss_pred HHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 012804 279 VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 358 (456)
Q Consensus 279 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 358 (456)
.+.++. +...+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|...++++.... |.+..
T Consensus 569 L~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~ 644 (987)
T PRK09782 569 EQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSN 644 (987)
T ss_pred HhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 987432 3333444444555669999999999999986 4578889999999999999999999999999874 66788
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 012804 359 AYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 435 (456)
Q Consensus 359 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 435 (456)
.+..+..++...|++++|++.++++... ++..+..+..++...|++++|+..++++++..+. +..+....++...+
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~-~a~i~~~~g~~~~~ 723 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN-QALITPLTPEQNQQ 723 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CchhhhhhhHHHHH
Confidence 8999999999999999999999998766 7788999999999999999999999999977532 44566667777777
Q ss_pred cCChHHHHHHHHHHHhc
Q 012804 436 SGCRREAKKIQSKIRMA 452 (456)
Q Consensus 436 ~g~~~~A~~~~~~~~~~ 452 (456)
..+++.|.+-+++.-.-
T Consensus 724 ~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 724 RFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 88888888777665443
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1e-18 Score=157.90 Aligned_cols=439 Identities=13% Similarity=0.060 Sum_probs=331.5
Q ss_pred hHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 012804 7 TRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAG 86 (456)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (456)
+++|--+.++|-..|++++|...|.+..+......+..+.-+.+.+.+.|+.+.+...|+.+.+.. +.+..+...|...
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhH
Confidence 456778899999999999999999999887644335566778999999999999999999998873 4456677777777
Q ss_pred HHcCC----ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH----hCCCCCChhHHHHHHHHHH
Q 012804 87 ATRNS----LLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMI----CGDLTPCTATFNIMLNGLC 158 (456)
Q Consensus 87 ~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~ 158 (456)
|...+ ..+.|..++.+..+.. +.|...|..+...+....-+. ++.+|..+. ..+.++.+...|.+...+.
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHF 463 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH
Confidence 77665 4567777777777654 447788888777766554443 377666544 3454577889999999999
Q ss_pred hcCChHHHHHHHHHHHhC---CCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHH
Q 012804 159 KNRYTDNALRMFRGLQKH---GFV------PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA-ITYTTIMKCCF 228 (456)
Q Consensus 159 ~~~~~~~a~~~~~~~~~~---~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 228 (456)
..|++.+|...|...... ... ++..+-..+....-..++++.|.+.|..+.... |.. ..|..++....
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~ 541 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMAR 541 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHH
Confidence 999999999999988765 112 222234456667777889999999999998753 333 33444444445
Q ss_pred hcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCccCHHHHHHHHHHHHh--------
Q 012804 229 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCK-------- 299 (456)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~-------- 299 (456)
..+...+|...+..+...+ ..++..+..+...+.....+..|.+-|..+.+. ...+|+.+...|...|.+
T Consensus 542 ~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn 620 (1018)
T KOG2002|consen 542 DKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRN 620 (1018)
T ss_pred hccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccC
Confidence 5678899999999999876 667778888888999999999999877777664 223577777777775553
Q ss_pred ----cCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 012804 300 ----EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 375 (456)
Q Consensus 300 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 375 (456)
.+..++|+++|....+..+ -+...-+.+.-.++..|++..|..+|.++.+.. .....+|..+..+|..+|++..
T Consensus 621 ~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~ 698 (1018)
T KOG2002|consen 621 PEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRL 698 (1018)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHH
Confidence 3457889999998887643 377888888889999999999999999999874 4456789999999999999999
Q ss_pred HHHHHHHhccC-----ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHH------------------H
Q 012804 376 AINVFESMEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD------------------G 432 (456)
Q Consensus 376 a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~------------------~ 432 (456)
|+++|+..... ++.+...|.+++.+.|.+.+|.+.+..++...+.-....++..+- .
T Consensus 699 AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev 778 (1018)
T KOG2002|consen 699 AIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEV 778 (1018)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHH
Confidence 99999987766 788999999999999999999999999887654433333332221 1
Q ss_pred HHccCChHHHHHHHHHHHhcc
Q 012804 433 LRHSGCRREAKKIQSKIRMAK 453 (456)
Q Consensus 433 ~~~~g~~~~A~~~~~~~~~~~ 453 (456)
....+..+.|.++|..+...+
T Consensus 779 ~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 779 LEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 122334667777777776543
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.88 E-value=5.1e-17 Score=153.09 Aligned_cols=400 Identities=13% Similarity=0.064 Sum_probs=302.3
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCC
Q 012804 12 ICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNS 91 (456)
Q Consensus 12 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 91 (456)
.++..+...|+.++|+..++++.... ..+......+...+...|++++|+++|+++.+.. +.++..+..++..+...+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcC
Confidence 88888899999999999999998221 2233344444668888999999999999999875 335677778889999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 012804 92 LLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFR 171 (456)
Q Consensus 92 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 171 (456)
+.++|++.++++.... |+...+..++..+...++..+|++.++++.+.. |.+...+..+..++.+.|-...|.++..
T Consensus 151 q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 151 RGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred CHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 9999999999998864 555556555555555677767999999999886 6678888999999999999999998877
Q ss_pred HHHhCCCCCcHHHH------HHHHHHH-----HHcCC---HHHHHHHHHHHhh-CCCCCCH-HH----HHHHHHHHHhcC
Q 012804 172 GLQKHGFVPELVTY------NILIKGL-----CKAGR---LRTARWILKELGD-SGHAPNA-IT----YTTIMKCCFRNR 231 (456)
Q Consensus 172 ~~~~~~~~~~~~~~------~~l~~~~-----~~~~~---~~~a~~~~~~~~~-~~~~~~~-~~----~~~l~~~~~~~~ 231 (456)
+-... +.+....+ ..+++.- ....+ .+.|+.-++.+.. .+..|.. .. ..-.+-++...+
T Consensus 228 ~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~ 306 (822)
T PRK14574 228 ENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRH 306 (822)
T ss_pred hCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhh
Confidence 65433 22221111 1111100 01122 3445555555544 1222322 11 123355678889
Q ss_pred chhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-----CccCHHHHHHHHHHHHhcCCHHHH
Q 012804 232 KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG-----VQLDIVSYNTLINLYCKEGKLEAA 306 (456)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a 306 (456)
+..+++..++.+...+.+....+...+..+|...+++++|..++..+.... ..++......|.-+|...+++++|
T Consensus 307 r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A 386 (822)
T PRK14574 307 QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKA 386 (822)
T ss_pred hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHH
Confidence 999999999999988866667788899999999999999999999997753 123444457889999999999999
Q ss_pred HHHHHHHHHcCC-----------CcCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 012804 307 YLLLDEMEKQGF-----------ECDK---YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 372 (456)
Q Consensus 307 ~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 372 (456)
..+++.+.+... .|+. ..+..++..+...|+..+|++.++.+.... |-|......+...+...|.
T Consensus 387 ~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 387 YQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDL 465 (822)
T ss_pred HHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 999999987422 1221 234456777889999999999999998874 7889999999999999999
Q ss_pred HHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 012804 373 IDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 373 ~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 418 (456)
+.+|.+.++.+... +..+....+.++...|++++|..+.+.+.+..
T Consensus 466 p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 466 PRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 99999999876655 66777788899999999999999999998763
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=7.4e-19 Score=146.04 Aligned_cols=422 Identities=14% Similarity=0.101 Sum_probs=268.7
Q ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHH-HHHHHHHccCChhHHHHHHHHHHhCCCCCC------HhHH
Q 012804 8 RLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYN-MLIDAYCQFVSFDAGYTILNRMREAGISPD------VVTY 80 (456)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~ 80 (456)
.+...|.+.|..+..+.+|+..++-+++...-|+..... .+.+.+.+.+++.+|++.|+..... .|+ +...
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil 279 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKIL 279 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHH
Confidence 344455667777788888888888888777666665432 3556777888888888888776654 222 2334
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC------------Chh
Q 012804 81 NSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTP------------CTA 148 (456)
Q Consensus 81 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~ 148 (456)
+.+...+.+.|+++.|+..|+...+. .|+..+-..|+-++..-|+-++..+.|.+|+.....+ +..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 55555677888888888888887764 3677666667777777888888888888887543222 222
Q ss_pred HHHHHH-----HHHHhcC--ChHHHHHHHHHHHhCCCCCcHH-------------HH--------HHHHHHHHHcCCHHH
Q 012804 149 TFNIML-----NGLCKNR--YTDNALRMFRGLQKHGFVPELV-------------TY--------NILIKGLCKAGRLRT 200 (456)
Q Consensus 149 ~~~~l~-----~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~-------------~~--------~~l~~~~~~~~~~~~ 200 (456)
..+.-+ .-.-+.+ +.++++-.--++..--+.|+-. .+ -.-...+.++|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 222111 1111111 1112221111111111111100 00 011234667777777
Q ss_pred HHHHHHHHhhCCCCCCHHH------------------------------------HHHHHHHHHhcCchhHHHHHHHHHH
Q 012804 201 ARWILKELGDSGHAPNAIT------------------------------------YTTIMKCCFRNRKYKLGLEILSAMK 244 (456)
Q Consensus 201 a~~~~~~~~~~~~~~~~~~------------------------------------~~~l~~~~~~~~~~~~a~~~~~~~~ 244 (456)
|.++++-+.+......... ...-.......|++++|.+.+++.+
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 7777665544322111111 1111111223577888888888888
Q ss_pred HcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHh
Q 012804 245 RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 324 (456)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 324 (456)
..+..-....|+ +.-.+-..|+.++|.+.|-++... ...+..+...+...|-...++..|++++-+.... ++.|+..
T Consensus 518 ~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 518 NNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred cCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 665333333333 333456778888888888776654 3346677777888888888888888888777654 4557788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhc--cCChhhHHHHHHHHH-cc
Q 012804 325 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME--VKDSFTYSSMVHNLC-KA 401 (456)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~-~~ 401 (456)
+..|...|-+.|+..+|.+.+-.--+. ++.+.++...|...|....-+++++..|+++. +++..-|..++..|. +.
T Consensus 595 lskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhc
Confidence 888888888888888888877665554 57788888888888888888888888888754 447777877766554 58
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCC
Q 012804 402 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 438 (456)
Q Consensus 402 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 438 (456)
|++.+|.++++....+ ++.|...+..+++.+...|.
T Consensus 674 gnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 8899998888888765 55588888888888877775
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.87 E-value=8e-17 Score=132.94 Aligned_cols=409 Identities=15% Similarity=0.151 Sum_probs=292.9
Q ss_pred CchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccC--Chh-HHHHHHHHHHhCC---------
Q 012804 5 LSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFV--SFD-AGYTILNRMREAG--------- 72 (456)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~-~a~~~~~~~~~~~--------- 72 (456)
..+++=|.|+ -...+|.+.++.-+++.|...|+..+...-..+++..+-.+ +.- .-++.|-.|...|
T Consensus 114 ~~V~~E~nL~-kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~ 192 (625)
T KOG4422|consen 114 LQVETENNLL-KMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKS 192 (625)
T ss_pred hhhcchhHHH-HHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccc
Confidence 3444445554 45678999999999999999998877776666655433222 111 1123333333322
Q ss_pred ----------CCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 012804 73 ----------ISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGD 142 (456)
Q Consensus 73 ----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 142 (456)
.+-+..+|..+|.++|+-...+.|.+++++......+.+..+||.+|.+-.-..+ .+++.+|.+..
T Consensus 193 G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqk 268 (625)
T KOG4422|consen 193 GAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQK 268 (625)
T ss_pred ccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhh
Confidence 2345678999999999999999999999999888788899999999887554332 78899999999
Q ss_pred CCCChhHHHHHHHHHHhcCChHH----HHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHhh----CCC
Q 012804 143 LTPCTATFNIMLNGLCKNRYTDN----ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT-ARWILKELGD----SGH 213 (456)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~ 213 (456)
+.||..|+|.++.+..+.|+++. |.+++.+|.+.|+.|...+|..+|..+.+.++..+ +..++..+.+ ..+
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 99999999999999999998765 56788999999999999999999999998887644 4444444433 222
Q ss_pred C---C-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHcC----CCcC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012804 214 A---P-NAITYTTIMKCCFRNRKYKLGLEILSAMKRKG----YTFD---GFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 282 (456)
Q Consensus 214 ~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 282 (456)
+ | +...|...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+..+.+.....+.....++.|+-.-
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 2 2 44556778888889999999998877665432 2232 2345667777888889999999999999887
Q ss_pred CccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC-CH---H----------HHHHHH---
Q 012804 283 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG-NI---K----------GARLHL--- 345 (456)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~---~----------~a~~~~--- 345 (456)
.-|+..+...++++..-.|.++-..++|..++..|..........++..+++.+ .. + -|..++
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~ 508 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAY 508 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 788889999999999999999999999998887765444444444444444333 11 0 011111
Q ss_pred ----HHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC--------ChhhHHHHHHHHHccCChhHHHHHHHH
Q 012804 346 ----EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--------DSFTYSSMVHNLCKAKRLPSASKLLLS 413 (456)
Q Consensus 346 ----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~ 413 (456)
.++.+. ..+....+..+-.+.+.|+.++|.++|.-.... ...+...++..-.+.+.+..|+..++-
T Consensus 509 e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~ 586 (625)
T KOG4422|consen 509 ESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQL 586 (625)
T ss_pred HhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 122222 344566777788889999999999999877544 122233556666778888899999988
Q ss_pred HHHcCCC
Q 012804 414 CLKSGVR 420 (456)
Q Consensus 414 ~~~~~~~ 420 (456)
|...+.+
T Consensus 587 a~~~n~~ 593 (625)
T KOG4422|consen 587 ASAFNLP 593 (625)
T ss_pred HHHcCch
Confidence 8766544
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.87 E-value=4.6e-16 Score=135.14 Aligned_cols=429 Identities=12% Similarity=0.045 Sum_probs=249.2
Q ss_pred HHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHH----HhCCCCCCHhHHHHHHHHH----
Q 012804 16 TFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRM----REAGISPDVVTYNSLIAGA---- 87 (456)
Q Consensus 16 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~---- 87 (456)
+|.+..-|+.|..+++.+.+. ++.+...|..-...=-.+|+.+....++++- ...|+..+...|-.=...|
T Consensus 415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 344555566666666665553 3335555555555555555555555444332 2334444444444444444
Q ss_pred ---------------------------------HcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 012804 88 ---------------------------------TRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRV 134 (456)
Q Consensus 88 ---------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 134 (456)
.+.+.++-+..+|...++- .+.+...|......--..|..++...+
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 4444444444444444442 122333444444444444555555555
Q ss_pred HHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC
Q 012804 135 FQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA 214 (456)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 214 (456)
|+++...- +.....|......+-..|+...|..++....+.. +.+...|-..+.....+..++.|..+|.+... ..
T Consensus 573 lqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~--~s 648 (913)
T KOG0495|consen 573 LQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS--IS 648 (913)
T ss_pred HHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cC
Confidence 55555432 3333444444455555566666666666655542 22455555555555666666666666665554 23
Q ss_pred CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHH
Q 012804 215 PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 294 (456)
Q Consensus 215 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 294 (456)
|+...|..-+....-.+..++|.+++++.++.- +.-...|..+.+.+-+.++++.|...|..-.+. .+..+..|..+.
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLa 726 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLA 726 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHH
Confidence 445555444444445556666666666665542 333445555555666666666666655544443 333444555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHH
Q 012804 295 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 374 (456)
Q Consensus 295 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 374 (456)
..--+.|.+-+|..++++..-.++. +...|...++.-.+.|+.+.|..+..++++. .+.+...|..-|...-+.++-.
T Consensus 727 kleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkT 804 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKT 804 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccch
Confidence 5555566666666666666555432 5556666666666666666666666666554 3445556666665555555544
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhccc
Q 012804 375 HAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 454 (456)
Q Consensus 375 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 454 (456)
.....+.+... |+.+...+...+-....+++|.+.|.+.++.+.. +..+|..+...+.+.|.-++-..++.+.....+
T Consensus 805 ks~DALkkce~-dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 805 KSIDALKKCEH-DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HHHHHHHhccC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 44444433322 7788888888999999999999999999988644 778899999999999999999999999988877
Q ss_pred CC
Q 012804 455 SH 456 (456)
Q Consensus 455 ~~ 456 (456)
.|
T Consensus 883 ~h 884 (913)
T KOG0495|consen 883 TH 884 (913)
T ss_pred CC
Confidence 65
No 30
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=2.4e-15 Score=125.89 Aligned_cols=430 Identities=11% Similarity=0.005 Sum_probs=244.4
Q ss_pred hHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 012804 7 TRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAG 86 (456)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (456)
...|...+..=+++..+..|..+|++++..-|..| ..|...+.+=-..|+...|.++|+...+. .|+..+|.+.+..
T Consensus 107 itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~f 183 (677)
T KOG1915|consen 107 ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKF 183 (677)
T ss_pred chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHH
Confidence 33444444444444555555555555444322211 12333333333345555555555555443 4555555555555
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-C-CCCChhHHHHHHHHHHhcCChH
Q 012804 87 ATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICG-D-LTPCTATFNIMLNGLCKNRYTD 164 (456)
Q Consensus 87 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~ 164 (456)
=.+.+.++.|..+++...- +.|++.+|.-....=.+.|....+..+|+..++. | -..+...+.++...-.++..++
T Consensus 184 ElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~E 261 (677)
T KOG1915|consen 184 ELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYE 261 (677)
T ss_pred HHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555544 2355555555555555555555555555554432 1 0111222333333333444555
Q ss_pred HHHHHHHHHHhCCCCCc--HHHHHHHHHHHHHcCCHHHHHHH--------HHHHhhCCCCCCHHHHHHHHHHHHhcCchh
Q 012804 165 NALRMFRGLQKHGFVPE--LVTYNILIKGLCKAGRLRTARWI--------LKELGDSGHAPNAITYTTIMKCCFRNRKYK 234 (456)
Q Consensus 165 ~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 234 (456)
.|.-+|+-.+++ ++.+ ...|......--+-|+.....+. ++.+...+ +.|..+|-..+..-...|+.+
T Consensus 262 Rar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~ 339 (677)
T KOG1915|consen 262 RARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKD 339 (677)
T ss_pred HHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHH
Confidence 555555555544 2222 22233332222233333222221 22223322 336677777777777778888
Q ss_pred HHHHHHHHHHHcCCCcChh--hHHHH--------HHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHH----Hhc
Q 012804 235 LGLEILSAMKRKGYTFDGF--GYCTV--------IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY----CKE 300 (456)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~--~~~~l--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 300 (456)
...++|+++...- ||-.. .+... +-.-....+.+.+.++++..++. ++....||..+--.| .++
T Consensus 340 ~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq 417 (677)
T KOG1915|consen 340 RIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQ 417 (677)
T ss_pred HHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHH
Confidence 8888888887653 43211 11111 11123456788888888888774 444555555444333 356
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 012804 301 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 380 (456)
Q Consensus 301 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 380 (456)
.+...|.+++...+. .-|...+|...|..-.+.++++.+..++++.++.+ |.+..+|......-...|+.+.|..+|
T Consensus 418 ~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 418 LNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIF 494 (677)
T ss_pred cccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 778888888877764 46777888888888888888888888888888875 667788888888888888888888888
Q ss_pred HHhccC-----ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH-----ccC-----------Ch
Q 012804 381 ESMEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR-----HSG-----------CR 439 (456)
Q Consensus 381 ~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g-----------~~ 439 (456)
+-+... ....|.+.|..-...|.++.|..+++++++.. +....|.+++.--. +.| ..
T Consensus 495 elAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~ 572 (677)
T KOG1915|consen 495 ELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAKFEASASEGQEDEDLAELEITDENI 572 (677)
T ss_pred HHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHHHhccccccccccchhhhhcchhHH
Confidence 877665 44567777777778888888888888888663 23345555543322 333 45
Q ss_pred HHHHHHHHHHH
Q 012804 440 REAKKIQSKIR 450 (456)
Q Consensus 440 ~~A~~~~~~~~ 450 (456)
..|+++|++..
T Consensus 573 ~~AR~iferAn 583 (677)
T KOG1915|consen 573 KRARKIFERAN 583 (677)
T ss_pred HHHHHHHHHHH
Confidence 56777777654
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=4.6e-15 Score=124.28 Aligned_cols=437 Identities=10% Similarity=0.053 Sum_probs=332.3
Q ss_pred chHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCH-hHHHHHH
Q 012804 6 STRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDV-VTYNSLI 84 (456)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~ 84 (456)
+...|-...+.=..++++..|.++|++++..+. .+...|-..+.+=.++.....|..+++..... -|-+ ..|--.+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHH
Confidence 455666666677778999999999999998774 58888999999999999999999999999875 3433 3444445
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChH
Q 012804 85 AGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTD 164 (456)
Q Consensus 85 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (456)
..=-..|++..|.++|+.-.+ .+|+...|.+.+..=.+.+.++.|..++++..-. .|++.+|--..+.-.+.|...
T Consensus 149 ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHH
Confidence 555568999999999999887 5799999999999999999999999999998865 689999999999999999999
Q ss_pred HHHHHHHHHHhC-CC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCchhHHHHH--
Q 012804 165 NALRMFRGLQKH-GF-VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP-NAITYTTIMKCCFRNRKYKLGLEI-- 239 (456)
Q Consensus 165 ~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~-- 239 (456)
.+..+|+...+. |- .-+...+.+...--.+++.++.|.-+|+-.+..-+.. ....|..+...--+-|+.......
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 999999988764 11 0122334444444456778899999998877642221 133444444444445554333322
Q ss_pred ------HHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH--HHHHHHHH--------HHHhcCCH
Q 012804 240 ------LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI--VSYNTLIN--------LYCKEGKL 303 (456)
Q Consensus 240 ------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~--------~~~~~~~~ 303 (456)
++.....+ +.|-.++-..+......|+.+...++++..+.. ++|-. ..|...|- .-....+.
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34444444 677788888888888899999999999999986 44422 12222221 12346899
Q ss_pred HHHHHHHHHHHHcCCCcCHHhHHHH----HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 012804 304 EAAYLLLDEMEKQGFECDKYTHTIL----IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 379 (456)
Q Consensus 304 ~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 379 (456)
+.+.++++...+. ++....||..+ ...-.++.+...|.+++..++ |..|...+|...|..-.+.+.++...++
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999884 33345555543 344467889999999999887 4588999999999999999999999999
Q ss_pred HHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhccc
Q 012804 380 FESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG-VRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 454 (456)
Q Consensus 380 ~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 454 (456)
+++...- +..+|...+..-...|+.+.|..+|+-++... +......|...++--...|.++.|+.+++++.+.+.
T Consensus 460 YEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 460 YEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 9998887 55677777777788999999999999998762 333456777888888889999999999999987654
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=1.9e-15 Score=124.90 Aligned_cols=408 Identities=15% Similarity=0.167 Sum_probs=297.1
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCC--ChhHH-HHHHHHHHH-------------
Q 012804 42 VVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNS--LLSCS-LDLLDEMLE------------- 105 (456)
Q Consensus 42 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a-~~~~~~~~~------------- 105 (456)
+.+-|.++... ..|..+++.-+|+.|.+.|++.+...-..|++..+-.+ ++.-+ ++.|-.|..
T Consensus 116 V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 44556666654 57889999999999999998877766655554433211 11100 111111111
Q ss_pred ------CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 012804 106 ------MGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV 179 (456)
Q Consensus 106 ------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 179 (456)
.-.+.+..++..+|.+.++--..+.|.+++++-.....+.+..+||.++.+-.-..+ .+++.+|....+.
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcC
Confidence 112346788999999999999999999999998887778999999999876543322 7888999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHH----HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhH-HHHHHHHHHHc----CC--
Q 012804 180 PELVTYNILIKGLCKAGRLRTA----RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL-GLEILSAMKRK----GY-- 248 (456)
Q Consensus 180 ~~~~~~~~l~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~-- 248 (456)
||..|+|+++.+..+.|+++.| .+++.+|.+.|+.|...+|..+|..+.+.+++.+ +..++.++... .+
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 9999999999999999988764 5677788999999999999999999998888744 45555555432 22
Q ss_pred --CcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC----CccC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 012804 249 --TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG----VQLD---IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 319 (456)
Q Consensus 249 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 319 (456)
+.+...|...+..|.+..+.+-|..+..-+.... +.|+ ..-|..+....++....+.-...|+.|.-.-+-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 2345567777888889999999988877665431 2222 234566777788888899999999999887778
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-CH--------H-----HHHHHHHH---
Q 012804 320 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG-KI--------D-----HAINVFES--- 382 (456)
Q Consensus 320 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~-----~a~~~~~~--- 382 (456)
|+..+...++++....+.++-.-++|..++..|..-+...-..+...+++.. +. . -|..+++.
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~ 510 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYES 510 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999998876655555555555555544 11 1 11122221
Q ss_pred ----hccC--ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCC----CCCHHhHHHHHHHHHccCChHHHHHHHHHHHhc
Q 012804 383 ----MEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV----RILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 452 (456)
Q Consensus 383 ----~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 452 (456)
+.+. .+...+.++-.+.+.|+.++|.+++.-..+.+- .|....+..+.++-...++...|...++-+...
T Consensus 511 ~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 511 QPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred hHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 1111 667788888899999999999999998865532 234445557777888889999999988888665
Q ss_pred cc
Q 012804 453 KI 454 (456)
Q Consensus 453 ~~ 454 (456)
+.
T Consensus 591 n~ 592 (625)
T KOG4422|consen 591 NL 592 (625)
T ss_pred Cc
Confidence 54
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.83 E-value=1.2e-14 Score=126.46 Aligned_cols=435 Identities=13% Similarity=0.051 Sum_probs=291.4
Q ss_pred CCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHH
Q 012804 4 KLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSL 83 (456)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (456)
|.++..|-..+ ...+.++|..++.++++.- +.+...| .++.+...++.|..+++...+. ++.+...|.+.
T Consensus 377 P~sv~LWKaAV----elE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWita 446 (913)
T KOG0495|consen 377 PRSVRLWKAAV----ELEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITA 446 (913)
T ss_pred CchHHHHHHHH----hccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHH
Confidence 44555665544 4567778999999999864 3355444 4556667789999999999876 56678888887
Q ss_pred HHHHHcCCChhHHHHHHHHH----HHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--ChhHHHHHHHHH
Q 012804 84 IAGATRNSLLSCSLDLLDEM----LEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTP--CTATFNIMLNGL 157 (456)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~ 157 (456)
...=-.+|+.+...+++++- ...|+..+...|..=...|-..|..-.+..+....+..|+.. -..+|..-...|
T Consensus 447 a~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~ 526 (913)
T KOG0495|consen 447 AKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSC 526 (913)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHH
Confidence 77777899999888887764 345777788778777777777788777777777777666432 235677777777
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHH
Q 012804 158 CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGL 237 (456)
Q Consensus 158 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 237 (456)
.+.+.++-|..+|....+- ++.+...|......--..|..++...+|+++...-+ .....|......+-..|+...|.
T Consensus 527 ~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 527 EKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred HhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHH
Confidence 7777777777777777665 444555666665555666777777777777666422 24455555556666667777777
Q ss_pred HHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012804 238 EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 317 (456)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 317 (456)
.++..+.+.. +-+...+-..+.......+++.|..+|.+.... .|+..+|..-+....-.++.++|.+++++..+.
T Consensus 605 ~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 605 VILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 7777777664 445566666666666777777777777776653 456666666666666667777777777766654
Q ss_pred CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHH
Q 012804 318 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSM 394 (456)
Q Consensus 318 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l 394 (456)
++.-...|..+.+.+-+.++.+.|...|..-.+. .+..+..|..|...-.+.|.+-.|..++++..-+ +...|...
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~ 759 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLES 759 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHH
Confidence 2222445666666666667777776666655443 2334555666666666666666677776665544 55566666
Q ss_pred HHHHHccCChhHHHHHHHHHHHcC-----------------------------CCCCHHhHHHHHHHHHccCChHHHHHH
Q 012804 395 VHNLCKAKRLPSASKLLLSCLKSG-----------------------------VRILKSAQKAVVDGLRHSGCRREAKKI 445 (456)
Q Consensus 395 ~~~~~~~~~~~~A~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~ 445 (456)
++.-.+.|+.+.|..+.-++++.- ..-|+..+..+...+....+++.|+.+
T Consensus 760 Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~W 839 (913)
T KOG0495|consen 760 IRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREW 839 (913)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665555543321 123455666677778888889999999
Q ss_pred HHHHHhcccC
Q 012804 446 QSKIRMAKIS 455 (456)
Q Consensus 446 ~~~~~~~~~~ 455 (456)
|++.....+.
T Consensus 840 f~Ravk~d~d 849 (913)
T KOG0495|consen 840 FERAVKKDPD 849 (913)
T ss_pred HHHHHccCCc
Confidence 9998776543
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.83 E-value=1e-14 Score=131.56 Aligned_cols=441 Identities=14% Similarity=0.084 Sum_probs=282.4
Q ss_pred hHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 012804 7 TRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAG 86 (456)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (456)
....-...+.+...|++++|.+++.+.++..+. +...|..|..+|-+.|+.+++...+-.+...+ +.|...|..+...
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladl 216 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 334444455566679999999999999998754 88899999999999999999998887766654 4467888889999
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH----HHHHHHHhcCC
Q 012804 87 ATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFN----IMLNGLCKNRY 162 (456)
Q Consensus 87 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~ 162 (456)
..+.|.+..|.-.|.+.++..++ +...+---+..|-+.|+...|.+.|.++.....+.|..-+. .++..+...++
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999987533 55555667788999999999999999998775333332222 23455666777
Q ss_pred hHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC---------------------------CC
Q 012804 163 TDNALRMFRGLQKH-GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG---------------------------HA 214 (456)
Q Consensus 163 ~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~ 214 (456)
-+.|.+.++..... +-..+...++.++..+.+...++.+........... ..
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS 375 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence 78888888887662 223455677788888888888888887776665411 11
Q ss_pred CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcC--CCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHH
Q 012804 215 PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG--YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 292 (456)
Q Consensus 215 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 292 (456)
++..+ -.++-++......+....+...+.... +..+...|..+..++...|++.+|..++..+......-+...|..
T Consensus 376 ~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 376 YDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred ccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 11111 112223333344444444444444444 223345566666677777777777777777766544445566677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHH
Q 012804 293 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN--------KIGFDSNLEAYNCIV 364 (456)
Q Consensus 293 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~ 364 (456)
+..+|...|.++.|.+.++...... +-+...-..|...+.+.|+.++|.+.+..+. ..+..|+........
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 7777777777777777777666542 1234445555566666777777776666643 112334433333344
Q ss_pred HHHHhCCCHHHHHHHHHHhcc----------------------------------------C------------------
Q 012804 365 DRLGKDGKIDHAINVFESMEV----------------------------------------K------------------ 386 (456)
Q Consensus 365 ~~~~~~g~~~~a~~~~~~~~~----------------------------------------~------------------ 386 (456)
..+...|+.++-+.+-..+.. +
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~ 613 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFR 613 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhh
Confidence 444444443332111110000 0
Q ss_pred -------Ch----hhHHHHHHHHHccCChhHHHHHHHHHHHcC-CCCCHH----hHHHHHHHHHccCChHHHHHHHHHHH
Q 012804 387 -------DS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSG-VRILKS----AQKAVVDGLRHSGCRREAKKIQSKIR 450 (456)
Q Consensus 387 -------~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~ 450 (456)
+. ..+..++.++.+.+++++|+.+...+.+.. +.-+.. .-...+.+....+++..|...+..+.
T Consensus 614 ~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i 693 (895)
T KOG2076|consen 614 AVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVI 693 (895)
T ss_pred hhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11 123456677788889999998888887652 111222 22345567778889999988888776
Q ss_pred hc
Q 012804 451 MA 452 (456)
Q Consensus 451 ~~ 452 (456)
..
T Consensus 694 ~~ 695 (895)
T KOG2076|consen 694 TQ 695 (895)
T ss_pred HH
Confidence 54
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=6.9e-16 Score=128.62 Aligned_cols=402 Identities=12% Similarity=0.043 Sum_probs=276.4
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHH-HHHHHHHHcCCChhHHHHHHHHHHHCCCCCC----HHhHHHHHHH
Q 012804 47 MLIDAYCQFVSFDAGYTILNRMREAGISPDVVTY-NSLIAGATRNSLLSCSLDLLDEMLEMGIPPD----VWSYNSLMHC 121 (456)
Q Consensus 47 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~ 121 (456)
.+..-|.-+....+|+..|+-+.+...-|+.... ..+...+.+...+.+|+++++-.+..-+..+ ....+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 3444555566677888888888776655665433 2345667888999999999988877533223 2344555556
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC------------CcHHHHHHHH
Q 012804 122 LFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV------------PELVTYNILI 189 (456)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~~l~ 189 (456)
+.+.|.++.|+..|+...+. .|+-.+-..|+-++...|+-++..+.|.+|...... |+....+..+
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 88999999999999998876 577666666777777889999999999999765222 3333333322
Q ss_pred H-----HHHHcC--CHHHHHHHHHHHhhCCCCCCHHH-------------H--------HHHHHHHHhcCchhHHHHHHH
Q 012804 190 K-----GLCKAG--RLRTARWILKELGDSGHAPNAIT-------------Y--------TTIMKCCFRNRKYKLGLEILS 241 (456)
Q Consensus 190 ~-----~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~-------------~--------~~l~~~~~~~~~~~~a~~~~~ 241 (456)
. -.-+.+ +.++++-.-..+...-+.|+... + ..-..-+.+.|+++.|.+++.
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 1 111111 12222222222222112222100 0 011345789999999999998
Q ss_pred HHHHcCCCcChhhHHHH-----H-------------------------------HHHHHcCChHHHHHHHHHHHHCCCcc
Q 012804 242 AMKRKGYTFDGFGYCTV-----I-------------------------------AAFVKIGRLKEATDYMEQMVTDGVQL 285 (456)
Q Consensus 242 ~~~~~~~~~~~~~~~~l-----~-------------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~ 285 (456)
-+.+.+...-...-+.+ + ......|++++|...+++.+..+..-
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc 523 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC 523 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH
Confidence 88765422111111111 0 00112478899999999888764332
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012804 286 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 365 (456)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 365 (456)
....|+ +.-.+-..|+.++|++.|-.+... +..+..++..+...|....+..+|++++.+.... ++.|+.+++.|..
T Consensus 524 ~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~d 600 (840)
T KOG2003|consen 524 TEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLAD 600 (840)
T ss_pred HHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHH
Confidence 223333 344567889999999999887654 2347788889999999999999999999998776 6788999999999
Q ss_pred HHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHH-HHHccCChHH
Q 012804 366 RLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD-GLRHSGCRRE 441 (456)
Q Consensus 366 ~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~ 441 (456)
.|-+.|+-..|.+..-..-.- +..+..-|...|....-+++|+.+|+++. -++|+.+-|..++. ++++.|+++.
T Consensus 601 lydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred HhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHH
Confidence 999999999998876544333 77888888888999999999999999985 46899999997765 5577999999
Q ss_pred HHHHHHHHHhcccC
Q 012804 442 AKKIQSKIRMAKIS 455 (456)
Q Consensus 442 A~~~~~~~~~~~~~ 455 (456)
|..+++.+.+.-+.
T Consensus 679 a~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 679 AFDLYKDIHRKFPE 692 (840)
T ss_pred HHHHHHHHHHhCcc
Confidence 99999999886553
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.79 E-value=1.7e-14 Score=130.13 Aligned_cols=186 Identities=11% Similarity=0.035 Sum_probs=82.6
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 012804 56 VSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVF 135 (456)
Q Consensus 56 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 135 (456)
|++++|.+++.++.+.. +.+...|..|...|-..|+.+++...+-..-...+ .|...|..+.....+.|.+++|.-+|
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHHHHHHH
Confidence 55555555555555442 23444455555555555555555544433332222 13344555555555555555555555
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHhhC
Q 012804 136 QDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTY----NILIKGLCKAGRLRTARWILKELGDS 211 (456)
Q Consensus 136 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~ 211 (456)
.+.++.. +++....-.-...|-+.|+...|...|.++.....+.+..-+ ...+..+...++.+.|.+.++.....
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 5555444 333333333444455555555555555555444211111111 11233334444444454444443331
Q ss_pred -CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 012804 212 -GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK 244 (456)
Q Consensus 212 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 244 (456)
+-..+...++.++..+.+...++.+........
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~ 343 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDR 343 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHh
Confidence 111233344444455555555555554444443
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.78 E-value=3.6e-15 Score=132.22 Aligned_cols=280 Identities=12% Similarity=0.024 Sum_probs=185.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH--HHHHHHHHhcCchhHH
Q 012804 160 NRYTDNALRMFRGLQKHGFVPELVTYNI-LIKGLCKAGRLRTARWILKELGDSGHAPNAITY--TTIMKCCFRNRKYKLG 236 (456)
Q Consensus 160 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a 236 (456)
.|+++.|.+.+....+.. +++..+.. ...+....|+++.|...+.++.+. .|+.... ......+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 577777776666654431 12222222 234446777777777777777653 2333222 2335566777777777
Q ss_pred HHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH-------HHHHHHHHHHHhcCCHHHHHHH
Q 012804 237 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI-------VSYNTLINLYCKEGKLEAAYLL 309 (456)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~ 309 (456)
...++.+.+.. |-++.....+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77777777665 556667777777777777777777777777776443222 1222333333344455666666
Q ss_pred HHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---
Q 012804 310 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 386 (456)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 386 (456)
++.+.+. .+.+......+...+...|+.++|...+++..+. +|+..... +.+....++.+++.+..++..+.
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH--HHhhccCCChHHHHHHHHHHHhhCCC
Confidence 6666443 2346677778888888888888888888888774 55553322 22334558888888888877665
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 012804 387 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 451 (456)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 451 (456)
|+..+..++..+.+.+++++|.+.|+++.+. .|+..++..+..++.+.|+.++|..++++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6677788888888888888888888888855 57888888888888888888888888887643
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.9e-13 Score=114.42 Aligned_cols=357 Identities=11% Similarity=0.046 Sum_probs=249.2
Q ss_pred CHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHH--HHH
Q 012804 76 DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATF--NIM 153 (456)
Q Consensus 76 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l 153 (456)
|...+-.....+.+.|..+.|++.|...... .|-.-..|..|... ..+.+.+ ..+.. +.+.+..-+ -.+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~l---it~~e~~----~~l~~-~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSEL---ITDIEIL----SILVV-GLPSDMHWMKKFFL 233 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHh---hchHHHH----HHHHh-cCcccchHHHHHHH
Confidence 4433334444455667777777777666543 12222233332222 2222222 22221 112221111 123
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHhcC
Q 012804 154 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA--PNAITYTTIMKCCFRNR 231 (456)
Q Consensus 154 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 231 (456)
..++....+.+++..-.+...+.|++.+...-+....+.....++++|+.+|+.+.+..+- -|..+|+.++-. +..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhh
Confidence 4566666788888888888888888777766666777778888999999999999886321 255667666533 222
Q ss_pred chhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012804 232 KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 311 (456)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 311 (456)
+- +..-+.......+ +.-+.|...+..-|+-.++.++|...|+..++.++. ....|+.+..-|....+...|.+.++
T Consensus 312 ~s-kLs~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KS-KLSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hH-HHHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 21 1111222222222 444567778888899999999999999999998655 67789999999999999999999999
Q ss_pred HHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---Ch
Q 012804 312 EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DS 388 (456)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~ 388 (456)
..++.++ .|-..|-.|.++|.-.+.+.-|+-+|+++.... |.|...|..|+.+|.+.++.++|++.|.++... +.
T Consensus 389 rAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~ 466 (559)
T KOG1155|consen 389 RAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG 466 (559)
T ss_pred HHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence 9998753 388899999999999999999999999999874 778999999999999999999999999998876 45
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHc----CCCCCHH---hHHHHHHHHHccCChHHHHHHHHHH
Q 012804 389 FTYSSMVHNLCKAKRLPSASKLLLSCLKS----GVRILKS---AQKAVVDGLRHSGCRREAKKIQSKI 449 (456)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~ 449 (456)
..+..++..|-+.++.++|...|++.++. |.. ++. +...|..-+.+.+++++|..+..+.
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~-~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEI-DDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 78999999999999999999999998763 322 332 2233555567777877776654443
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.77 E-value=4.3e-18 Score=144.34 Aligned_cols=259 Identities=17% Similarity=0.131 Sum_probs=110.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc
Q 012804 187 ILIKGLCKAGRLRTARWILKELGDSG-HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 265 (456)
Q Consensus 187 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (456)
.+...+.+.|++++|+++++...... .+.+...|..+...+...++++.|...++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 44677788888888888886544433 23345555556667777888999999999888775 3456667777766 688
Q ss_pred CChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCcCHHhHHHHHHHHHhcCCHHHHHHH
Q 012804 266 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDKYTHTILIDGLCKAGNIKGARLH 344 (456)
Q Consensus 266 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 344 (456)
+++++|.+++....+. .+++..+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|...
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8999999888776654 3466777788888999999999999999987532 345677788888889999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 012804 345 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 421 (456)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 421 (456)
++++++.. |.|......++..+...|+.+++.+++...... ++..|..++.++...|++++|+..+++..+..+ .
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p-~ 246 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP-D 246 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccc-c
Confidence 99998873 556888889999999999999877777665544 788889999999999999999999999988753 3
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 012804 422 LKSAQKAVVDGLRHSGCRREAKKIQSKIRM 451 (456)
Q Consensus 422 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 451 (456)
|+.+...++.++...|+.++|..+..++-+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 889999999999999999999998877643
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2.6e-14 Score=120.26 Aligned_cols=217 Identities=14% Similarity=0.055 Sum_probs=119.5
Q ss_pred hcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHH
Q 012804 229 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL 308 (456)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 308 (456)
-.|+.-.+..-|+..+..... +...|-.+..+|....+.++....|++..+.++. ++.+|..-.+.+.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHH
Confidence 345556666666666655422 2222444555566666666666666666665433 45555555555555666666666
Q ss_pred HHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC--
Q 012804 309 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 386 (456)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 386 (456)
=|++.+..... +...|..+.-+..+.+.+++++..|++.+++ +|.-+++|+.....+...++++.|.+.|+.++..
T Consensus 416 DF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 416 DFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 66666654221 3444555555555666666666666666554 4555566666666666666666666666655544
Q ss_pred -------ChhhHHHHHH-HHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 012804 387 -------DSFTYSSMVH-NLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 450 (456)
Q Consensus 387 -------~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 450 (456)
++..+..-.- .+.-.+++..|+.++.++++.+++ ....+..++..-.+.|+.++|+++|++..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1111111000 111235666666666666655443 44555666666666666666666666543
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.77 E-value=5.7e-15 Score=131.70 Aligned_cols=287 Identities=10% Similarity=0.013 Sum_probs=162.7
Q ss_pred hcCChHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHH
Q 012804 159 KNRYTDNALRMFRGLQKHGFVPE-LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGL 237 (456)
Q Consensus 159 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 237 (456)
..|+++.|.+.+.+..+. .|+ ...+-....+....|+++.|...+.+..+....+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 356666666666555544 222 22223334555566666666666666554322222222233355556666666666
Q ss_pred HHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHH-HHHH---HHHhcCCHHHHHHHHHHH
Q 012804 238 EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN-TLIN---LYCKEGKLEAAYLLLDEM 313 (456)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~~~~~~a~~~~~~~ 313 (456)
..++.+.+.. |-++.....+...+...|++++|.+.+..+.+.+.. +...+. .-.. .....+..++..+.+..+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666666664 445556666666666666666666666666665433 222221 1111 112222222223344333
Q ss_pred HHcCC---CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhCCCHHHHHHHHHHhccC--
Q 012804 314 EKQGF---ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD--RLGKDGKIDHAINVFESMEVK-- 386 (456)
Q Consensus 314 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~-- 386 (456)
..... +.+...+..++..+...|+.++|...+++..+.. +++......++. .....++.+.+.+.+++..+.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 33211 1256666677777777777777777777777652 222211001111 223346667777777666554
Q ss_pred -Ch--hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 012804 387 -DS--FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 450 (456)
Q Consensus 387 -~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 450 (456)
++ ....++++.+.+.|++++|.+.|++.......|++.++..++..+.+.|+.++|.+++++..
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55 56667888888888888888888854333446777777788888888888888888888753
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.76 E-value=1.6e-14 Score=128.10 Aligned_cols=284 Identities=11% Similarity=0.047 Sum_probs=218.5
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhH-HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhH--HHHHHHHHhcCChhHH
Q 012804 55 FVSFDAGYTILNRMREAGISPDVVT-YNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSY--NSLMHCLFQLGKPDEA 131 (456)
Q Consensus 55 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a 131 (456)
.|+++.|.+.+....+.. +++.. |........+.|+++.+.+.+.++.+.. |+.... ......+...|++++|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHH
Confidence 699999998888766542 23333 3333555588999999999999998753 444322 2446788899999999
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH-------HHHHHHHHHHHHcCCHHHHHHH
Q 012804 132 NRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPEL-------VTYNILIKGLCKAGRLRTARWI 204 (456)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~ 204 (456)
.+.++++.+.. |.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998876 667788888899999999999999999999887654322 2344445555555666777777
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCc
Q 012804 205 LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 284 (456)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 284 (456)
++.+... .+.++.....+...+...|+.++|...+++..+. ++++... ++.+....++.+++.+..+...+..+.
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 7766543 2347788888999999999999999999998874 5555322 233344568999999999999887543
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012804 285 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 351 (456)
Q Consensus 285 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (456)
|+..+..+...+.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|..++++....
T Consensus 327 -~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 327 -TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7788889999999999999999999999885 688888899999999999999999999987643
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.75 E-value=3.1e-14 Score=127.04 Aligned_cols=289 Identities=10% Similarity=-0.007 Sum_probs=169.0
Q ss_pred cCCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh--hHHHHHHHHHHhcCChHH
Q 012804 89 RNSLLSCSLDLLDEMLEMGIPPD-VWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCT--ATFNIMLNGLCKNRYTDN 165 (456)
Q Consensus 89 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ 165 (456)
..|+++.|.+.+.+..+.. |+ ...+......+...|+++.|.+.+.+..+.. |+. .........+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 4677777777776665543 33 2233344555666677777777777765442 332 223334566666777777
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHH-HHHHHH---HhcCchhHHHHHHH
Q 012804 166 ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT-TIMKCC---FRNRKYKLGLEILS 241 (456)
Q Consensus 166 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~ 241 (456)
|...++.+.+.. |-+...+..+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+.+...+.
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 777777777663 335566666777777777777777777777766543 222221 111111 22222222333444
Q ss_pred HHHHcCC---CcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012804 242 AMKRKGY---TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS-YNTLINLYCKEGKLEAAYLLLDEMEKQG 317 (456)
Q Consensus 242 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 317 (456)
.+.+... +.+...+..+...+...|+.++|.+.+++..+..+...... ...........++.+.+.+.++...+..
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 4443321 23666667777777777888888877777777533221111 1111112233466777777777766542
Q ss_pred CCcCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhc
Q 012804 318 FECDK--YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 384 (456)
Q Consensus 318 ~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 384 (456)
+-+. .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++..
T Consensus 330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1233 45567777778888888888888853333346777777778888888888888888887654
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.75 E-value=1.2e-17 Score=141.68 Aligned_cols=258 Identities=14% Similarity=0.096 Sum_probs=63.1
Q ss_pred HHHHHccCChhHHHHHHHHHHhCC-CCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 012804 49 IDAYCQFVSFDAGYTILNRMREAG-ISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK 127 (456)
Q Consensus 49 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 127 (456)
...+.+.|++++|+++++...... .+.++..|..+.......++++.|.+.++++...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444444444444444443322221 1112222333333334444444454444444443322 23333333333 34444
Q ss_pred hhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 012804 128 PDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG-FVPELVTYNILIKGLCKAGRLRTARWILK 206 (456)
Q Consensus 128 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 206 (456)
+++|.++++...+. .++...+..++..+...++++++.++++.+.... .+++...|..+...+.+.|+.++|...++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45554444443322 2233334444444444555555555544443321 12334444444455555555555555555
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccC
Q 012804 207 ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 286 (456)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 286 (456)
+..+..+. +......++..+...|+.+++.+++....+.. +.++..+..+..++...|+.++|..++++..+.+ +.|
T Consensus 171 ~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 54443221 34444445555555555555555555444443 3344444455555555555555555555555432 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012804 287 IVSYNTLINLYCKEGKLEAAYLLLDEM 313 (456)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 313 (456)
+.....+..++...|+.++|..+..++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 555555555555555555555554443
No 45
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.2e-12 Score=112.56 Aligned_cols=441 Identities=12% Similarity=0.031 Sum_probs=312.1
Q ss_pred CCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHH
Q 012804 4 KLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSL 83 (456)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (456)
..+..-+..+++-+..+.++..|.-+-++....+ .++..-.-+.+++.-.|++..|..++..-.-. ..|..+....
T Consensus 13 ~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~ 88 (611)
T KOG1173|consen 13 ELSLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLA 88 (611)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHH
Confidence 3466778888888889999999999999887665 45555566788888888899888887665432 4578888888
Q ss_pred HHHHHcCCChhHHHHHHHHH----HHC---------CCCCCHHh----HHHHH-------HHHHhcCChhHHHHHHHHHH
Q 012804 84 IAGATRNSLLSCSLDLLDEM----LEM---------GIPPDVWS----YNSLM-------HCLFQLGKPDEANRVFQDMI 139 (456)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~----~~~---------~~~~~~~~----~~~l~-------~~~~~~~~~~~a~~~~~~~~ 139 (456)
..++.+..+++.|..++..- ..- -+.+|..- -+.-. ..|....+.++|...|.+..
T Consensus 89 ~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al 168 (611)
T KOG1173|consen 89 AKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEAL 168 (611)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHH
Confidence 88899999999999988722 110 01111111 01111 23444456677777777666
Q ss_pred hCCCCCChhHHHHHHHHHH-----------------hcC-ChHHHHHHHHHHHh----------------CCCCCcHHHH
Q 012804 140 CGDLTPCTATFNIMLNGLC-----------------KNR-YTDNALRMFRGLQK----------------HGFVPELVTY 185 (456)
Q Consensus 140 ~~~~~~~~~~~~~l~~~~~-----------------~~~-~~~~a~~~~~~~~~----------------~~~~~~~~~~ 185 (456)
..++ ..-..+..++.... -.+ +.+.-..+|+-... .+..-+....
T Consensus 169 ~~D~-~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll 247 (611)
T KOG1173|consen 169 LADA-KCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLL 247 (611)
T ss_pred hcch-hhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHH
Confidence 4331 11111211211111 001 11111122221100 0122244445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc
Q 012804 186 NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 265 (456)
Q Consensus 186 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (456)
.....-+...+++.+..++.+.+.+..+ +....+..-|.++...|+..+-..+-.++.+.. |..+.+|-.+..-|...
T Consensus 248 ~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 248 AEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHh
Confidence 5556667788899999999998877533 355555555668888888888877777777764 77788899999999999
Q ss_pred CChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHH
Q 012804 266 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 345 (456)
Q Consensus 266 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 345 (456)
|...+|++.|.+....+.. =...|......|+-.|..++|+..+...-+.- +-...-+..+..-|.+.++.+.|.++|
T Consensus 326 ~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred cCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 9999999999998876433 34568889999999999999999998887641 112223344555688899999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC----------ChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 012804 346 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----------DSFTYSSMVHNLCKAKRLPSASKLLLSCL 415 (456)
Q Consensus 346 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 415 (456)
.++.... |.|+.+.+.+.-.....+.+.+|..+|+..... -..+++.|+.+|.+.+.+++|+..+++.+
T Consensus 404 ~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 404 KQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred HHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 9998763 777888888888888899999999999987643 23458889999999999999999999999
Q ss_pred HcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhcccC
Q 012804 416 KSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 455 (456)
Q Consensus 416 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 455 (456)
...++ +..++.+++-.|...|+++.|...|.+....++.
T Consensus 483 ~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 483 LLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred HcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 88654 9999999999999999999999999998776654
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.7e-12 Score=108.81 Aligned_cols=381 Identities=13% Similarity=0.025 Sum_probs=269.4
Q ss_pred CCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHh--H
Q 012804 38 VLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWS--Y 115 (456)
Q Consensus 38 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~ 115 (456)
...|...+-.....+.+.|....|+..|...... .+-.-.+|..|.... .-++....+... .+.|... -
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li-------t~~e~~~~l~~~-l~~~~h~M~~ 230 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI-------TDIEILSILVVG-LPSDMHWMKK 230 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh-------chHHHHHHHHhc-CcccchHHHH
Confidence 3445555555666677778888888888777653 122333343333322 222333333322 2212111 1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCcHHHHHHHHHHHH
Q 012804 116 NSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF--VPELVTYNILIKGLC 193 (456)
Q Consensus 116 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~ 193 (456)
-.+..++......+++.+-.+.+.+.|.+.+...-+....+.....++++|+.+|+++.+... -.|..+|..++..
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv-- 308 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV-- 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--
Confidence 124456666778889998889998888777666666666777788999999999999998721 1256777776643
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHH
Q 012804 194 KAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATD 273 (456)
Q Consensus 194 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 273 (456)
+..+-. +..+.+-...-.+-.+.|...+.+-|+-.++.++|...|++.++.+ +.....|..+.+-|....+...|..
T Consensus 309 ~~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 309 KNDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred HhhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHH
Confidence 333222 1122211111122355677778888999999999999999999987 6677788889999999999999999
Q ss_pred HHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 012804 274 YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 353 (456)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 353 (456)
.++..++.++. |-..|-.+.++|.-.+.+.-|+-.|++..... +.|...|..|...|.+.++.++|++.|......|
T Consensus 386 sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 386 SYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 99999998554 88999999999999999999999999998863 3488899999999999999999999999999876
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC-------ChhhH---HHHHHHHHccCChhHHHHHHHHHHHcCCCCCH
Q 012804 354 DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-------DSFTY---SSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 423 (456)
Q Consensus 354 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 423 (456)
..+...+..|...|.+.++.++|...|.+..+. ++.+. .-|..-+.+.+++++|.........-
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~------ 536 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG------ 536 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC------
Confidence 556788999999999999999999999876652 33222 22455556677777777665554322
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHhcc
Q 012804 424 SAQKAVVDGLRHSGCRREAKKIQSKIRMAK 453 (456)
Q Consensus 424 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 453 (456)
.-..++|..+++++++..
T Consensus 537 ------------~~e~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 537 ------------ETECEEAKALLREIRKIQ 554 (559)
T ss_pred ------------CchHHHHHHHHHHHHHhc
Confidence 123467777777776643
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=3.2e-13 Score=107.93 Aligned_cols=272 Identities=14% Similarity=0.083 Sum_probs=174.9
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-C--hhHHHHHHHHHHhcCChHHH
Q 012804 90 NSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTP-C--TATFNIMLNGLCKNRYTDNA 166 (456)
Q Consensus 90 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~--~~~~~~l~~~~~~~~~~~~a 166 (456)
+++.++|+++|-+|.+.+.. +..+-.+|.+.|.+.|..+.|+++-+.+.++.--+ + ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 45667777777777764322 44445567777777777777777777776532111 0 12334455667777777777
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHhcCchhHHHHHHHH
Q 012804 167 LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI----TYTTIMKCCFRNRKYKLGLEILSA 242 (456)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~ 242 (456)
+.+|..+.+.+.- -......|+..|-...+|++|++.-+++.+.+..+... .|--+...+....+++.|..++.+
T Consensus 127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 7777777765322 34556677777777788888887777776654443321 233455555566777888888888
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH
Q 012804 243 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 322 (456)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 322 (456)
..+.+ +.....--.+.+.....|+++.|.+.++.+.+.++..-+.+...|..+|.+.|+.++....+..+.+... ..
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~ 282 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GA 282 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--Cc
Confidence 77765 4444455556677778888888888888888876666667777788888888888888888888777533 33
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012804 323 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 368 (456)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 368 (456)
..-..+...-....-.+.|..++.+-+.. .|+...+..++..-.
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l 326 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHL 326 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhh
Confidence 33333433333444455666655555544 677777777777543
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=6.1e-15 Score=128.83 Aligned_cols=282 Identities=13% Similarity=0.000 Sum_probs=207.5
Q ss_pred ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCchhHHHH-
Q 012804 162 YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH--APNAITYTTIMKCCFRNRKYKLGLE- 238 (456)
Q Consensus 162 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~- 238 (456)
+..+|...|.++.++ ..-.......+..+|...+++++|.++|+.+.+... .-+...|.+.+..+-+ +-++.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 457788888886555 333456667788888888888888888888876422 1255666666544322 22232
Q ss_pred HHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 012804 239 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 318 (456)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 318 (456)
+-+.+.+.. +..+.+|..+..+|.-+++.+.|++.|++.+..+.. ...+|+.+..-+....++|.|...|+.......
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 333444444 667888999999999899999999999888876332 567788888888888888889888888876422
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHH
Q 012804 319 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMV 395 (456)
Q Consensus 319 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~ 395 (456)
. +-..|..+...|.+.++++.|+-.|+++.+.+ |.+......+...+.+.|+.++|+++++++... ++..-...+
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 2 34456667778888899999999999888765 556677777888888889999999999887665 666666777
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhcc
Q 012804 396 HNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 453 (456)
Q Consensus 396 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 453 (456)
..+...+++++|+..++++.+.- +.+...+..++..|.+.|+.+.|..-|.-+.+..
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 88888889999999999887663 3356777788888999999988888776665543
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.71 E-value=3.3e-13 Score=111.09 Aligned_cols=282 Identities=16% Similarity=0.141 Sum_probs=172.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHH
Q 012804 160 NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI 239 (456)
Q Consensus 160 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 239 (456)
.|++.+|++.+.+-.+.+-. ....|..-+.+-...|+.+.+-.++.++.+....++....-.........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 46666666666666555433 23334444555566667777777666666543344555555555666667777777777
Q ss_pred HHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 012804 240 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI-------VSYNTLINLYCKEGKLEAAYLLLDE 312 (456)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 312 (456)
+.++.+.+ +-++.......++|.+.|++.....++..+.+.+.-.+. .+|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77666665 555666666677777777777777777777766544333 2344444444444444444455555
Q ss_pred HHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---Chh
Q 012804 313 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSF 389 (456)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~ 389 (456)
.... .+.++..-..++.-+.++|+.++|.++..+..+.+..|+ ...+ -.+.+-++...-++..+..... ++.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 5433 233455566666667777777777777777776655554 1111 2334555555555555544433 667
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 012804 390 TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 450 (456)
Q Consensus 390 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 450 (456)
.+.+|+..|.+.+.+.+|.+.|+.+++. +|+..++..++.++.+.|+..+|....++..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 7777777777777777777777766643 6677777777777777777777777766554
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.2e-12 Score=110.55 Aligned_cols=393 Identities=11% Similarity=0.036 Sum_probs=258.5
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCC-HHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-HhHHHHHHHHH
Q 012804 10 LNICVCTFCKANRLEKAEAIIIDGIRLGVLPD-VVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPD-VVTYNSLIAGA 87 (456)
Q Consensus 10 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 87 (456)
+-...+-|.++|++++|++.+..++... |+ +.-|.....+|...|+|++..+--.+..+. .|+ +..+..-.+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 3445677889999999999999998764 56 667888888899999999998888777765 344 34555555666
Q ss_pred HcCCChhHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-CC--CCCChhHHHHHHHHHHh----
Q 012804 88 TRNSLLSCSLDLLDEMLEM-GIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMIC-GD--LTPCTATFNIMLNGLCK---- 159 (456)
Q Consensus 88 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~---- 159 (456)
-..|++.+|+.=..-..-. |+. |..+--.+=+.+-+ .|..-.++-.+ .+ +-|+.....+....+..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~ 267 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP 267 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc
Confidence 6677776665322221111 111 11111111111111 11111111111 11 12333222222222210
Q ss_pred ---------------------cC---ChHHHHHHHHHHHhC---CCCCc---------HHHHHHHHHHHHHcCCHHHHHH
Q 012804 160 ---------------------NR---YTDNALRMFRGLQKH---GFVPE---------LVTYNILIKGLCKAGRLRTARW 203 (456)
Q Consensus 160 ---------------------~~---~~~~a~~~~~~~~~~---~~~~~---------~~~~~~l~~~~~~~~~~~~a~~ 203 (456)
.+ .+..|...+.+-... ....+ ..+...-...+.-.|+.-.|..
T Consensus 268 ~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~ 347 (606)
T KOG0547|consen 268 LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQE 347 (606)
T ss_pred cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhh
Confidence 01 122222222221110 00001 1111112222345678888888
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 012804 204 ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 283 (456)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 283 (456)
-|+........++. .|-.+..+|....+.++....|....+.+ +.++.+|..-.+...-.+++++|..-|++.++.++
T Consensus 348 d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p 425 (606)
T KOG0547|consen 348 DFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP 425 (606)
T ss_pred hHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 89888876544332 27777788999999999999999999887 77888888888888889999999999999998754
Q ss_pred ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHH
Q 012804 284 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD-----SNLE 358 (456)
Q Consensus 284 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~ 358 (456)
. +...|..+..+..+.+.++++...|++.++. ++..+..|+.....+...++++.|.+.|+..++.... .++.
T Consensus 426 e-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~ 503 (606)
T KOG0547|consen 426 E-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAA 503 (606)
T ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccch
Confidence 4 6777878888888999999999999999987 4557889999999999999999999999998876211 1222
Q ss_pred H--HHHHHHHHHhCCCHHHHHHHHHHhccCCh---hhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 012804 359 A--YNCIVDRLGKDGKIDHAINVFESMEVKDS---FTYSSMVHNLCKAKRLPSASKLLLSCLKS 417 (456)
Q Consensus 359 ~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 417 (456)
. -..++..- =.+++..|..+++++.+.|+ ..+..|...-.+.|+.++|+++|++....
T Consensus 504 plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 504 PLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2 22222222 23899999999999998855 56888999999999999999999998644
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=2.2e-13 Score=108.77 Aligned_cols=300 Identities=13% Similarity=0.092 Sum_probs=218.9
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCC--CHHhHHHHHH
Q 012804 44 TYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMG-IPP--DVWSYNSLMH 120 (456)
Q Consensus 44 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~ 120 (456)
.|..-++.+. ..+.++|.++|-+|.+.. +.+..+--+|.+.|.+.|..+.|+.+.+.+.++- .+- .......|..
T Consensus 38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 38 DYVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 3444455443 467889999999988753 2244455678888889999999999998888751 111 1233456777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcC
Q 012804 121 CLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE----LVTYNILIKGLCKAG 196 (456)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~ 196 (456)
-|...|-++.|+++|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+-.+. ...|.-+...+....
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 7889999999999999988765 44566778888999999999999999988887754443 345677788888888
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHH
Q 012804 197 RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYME 276 (456)
Q Consensus 197 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 276 (456)
+++.|..++.+..+.+.+ ....--.+.......|+++.|.+.++.+.+.+...-+.+...+..+|...|+.++....+.
T Consensus 195 ~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 195 DVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred hHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 899999999988876443 3344445667888899999999999999988766677788889999999999999999998
Q ss_pred HHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHhC
Q 012804 277 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK---AGNIKGARLHLEYMNKI 351 (456)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 351 (456)
.+.+... ....-..+..........+.|...+.+-... .|+...+..++..... .|...+....++.|...
T Consensus 274 ~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 274 RAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 8887633 3344455555555556666777666665554 5888888888886543 34456667777777643
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.69 E-value=1.2e-12 Score=107.89 Aligned_cols=292 Identities=14% Similarity=0.065 Sum_probs=232.5
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 012804 55 FVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRV 134 (456)
Q Consensus 55 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 134 (456)
.|+|..|.++..+..+.+-. ....|..-.++.-+.|+.+.+-.++.+..+.-..++.....+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 79999999999988777533 45567777788889999999999999988864455677777788889999999999999
Q ss_pred HHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 012804 135 FQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPEL-------VTYNILIKGLCKAGRLRTARWILKE 207 (456)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 207 (456)
++++...+ +-.+.......++|.+.|++.....++.++.+.|.-.+. .+|..++.-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99988876 666788888999999999999999999999988765443 4677777777766666666667766
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH
Q 012804 208 LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 287 (456)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 287 (456)
.... ...++..-..++.-+.+.|+.++|.++..+..+.+..+. ...++ .+.+.++.+.-.+..++-.+.. +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 5543 344677777888889999999999999999998865555 22222 3556778888788777777663 3366
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 012804 288 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 356 (456)
Q Consensus 288 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 356 (456)
..+..|...|.+.+.|.+|...|+...+. .|+..+|..+..++.+.|+.++|.+..++....-.+|+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 88999999999999999999999977775 68999999999999999999999999998765433443
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=2.8e-14 Score=124.77 Aligned_cols=283 Identities=11% Similarity=0.075 Sum_probs=145.8
Q ss_pred hhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHhcCChhHHHHHH
Q 012804 58 FDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGI--PPDVWSYNSLMHCLFQLGKPDEANRVF 135 (456)
Q Consensus 58 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 135 (456)
..+|+..|..+... +.-+......+..+|...+++++|.++|+.+.+... --+...|.+.+.-+-+ .-+---+-
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~La 410 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSYLA 410 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHHHH
Confidence 34555555553332 122223334455555556666666666655554320 1134444444432221 11111122
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC
Q 012804 136 QDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVP-ELVTYNILIKGLCKAGRLRTARWILKELGDSGHA 214 (456)
Q Consensus 136 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 214 (456)
+.+++.. +..+.+|-.+.++|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+........
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 2233322 444556666666666666666666666665554 22 4455555555555556666666666555442211
Q ss_pred CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHH
Q 012804 215 PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 294 (456)
Q Consensus 215 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 294 (456)
....|..+...|.+.++++.|+-.|+.+.+.+ |.+......+...+-+.|+.++|+.+++++...+.. |+..--..+
T Consensus 488 -hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~ 564 (638)
T KOG1126|consen 488 -HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRA 564 (638)
T ss_pred -hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHH
Confidence 33334445555666666666666666666554 444445555555566666666666666666655433 333333444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012804 295 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 351 (456)
Q Consensus 295 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (456)
..+...+++++|+..++++++. ++-+...|..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 5555566666666666666654 1223445555566666666666666666666554
No 54
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.64 E-value=1.3e-10 Score=101.96 Aligned_cols=437 Identities=11% Similarity=0.035 Sum_probs=267.5
Q ss_pred CCCCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHH
Q 012804 2 FGKLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYN 81 (456)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 81 (456)
++|.....|..++.. ...+++...+++.+.+++..+. ...+.....-.+...|+-++|........+.++ .+.++|.
T Consensus 3 l~~KE~~lF~~~lk~-yE~kQYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwH 79 (700)
T KOG1156|consen 3 LSPKENALFRRALKC-YETKQYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWH 79 (700)
T ss_pred CChHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHhCCc-cchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHH
Confidence 345556666666654 4678999999999999885443 556666666667778999999998888777543 4678898
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC
Q 012804 82 SLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNR 161 (456)
Q Consensus 82 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 161 (456)
.+.-.+....++++|++.|......+.. |...+..+.-.-++.++++.....-..+.+.. +.....|..+..++.-.|
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g 157 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLG 157 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHH
Confidence 8888888899999999999999987644 77788888777888888888888877777654 445667888888888999
Q ss_pred ChHHHHHHHHHHHhCC-CCCcHHHHHHHH------HHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH-HHHHHHHHhcCch
Q 012804 162 YTDNALRMFRGLQKHG-FVPELVTYNILI------KGLCKAGRLRTARWILKELGDSGHAPNAITY-TTIMKCCFRNRKY 233 (456)
Q Consensus 162 ~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~ 233 (456)
+...|..+++...+.. ..|+...+.... ......|..++|.+.+..-... ..|...+ ..-...+.+.+++
T Consensus 158 ~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 158 EYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhH
Confidence 9999999999887764 245665554432 3345678888888877665432 1233332 3345667888999
Q ss_pred hHHHHHHHHHHHcCCCcChhhHH-HHHHHHHHcCChHHHH-HHHHHHHHCCCccCHHHHHHH-HHHHHhcCCHHHHHHHH
Q 012804 234 KLGLEILSAMKRKGYTFDGFGYC-TVIAAFVKIGRLKEAT-DYMEQMVTDGVQLDIVSYNTL-INLYCKEGKLEAAYLLL 310 (456)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~ 310 (456)
++|..++..++.. .||...|. .+..++.+..+..++. .+|....+. + |.......+ +.......-.+..-.++
T Consensus 236 EeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y-~r~e~p~Rlplsvl~~eel~~~vdkyL 311 (700)
T KOG1156|consen 236 EEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-Y-PRHECPRRLPLSVLNGEELKEIVDKYL 311 (700)
T ss_pred HhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-C-cccccchhccHHHhCcchhHHHHHHHH
Confidence 9999999999987 44544444 4444443333333343 555555443 1 111111111 11111111223333445
Q ss_pred HHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh----CC----------CCCCHHHH--HHHHHHHHhCCCHH
Q 012804 311 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK----IG----------FDSNLEAY--NCIVDRLGKDGKID 374 (456)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~~--~~l~~~~~~~g~~~ 374 (456)
..+.+.|+++- +..+...|-.....+-..++...+.. .| -+|....| ..++..+-+.|+++
T Consensus 312 ~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~ 388 (700)
T KOG1156|consen 312 RPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYE 388 (700)
T ss_pred HHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHH
Confidence 55555555432 22222222211111111111111110 00 13443333 33455566777777
Q ss_pred HHHHHHHHhccCCh---hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 012804 375 HAINVFESMEVKDS---FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 451 (456)
Q Consensus 375 ~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 451 (456)
.|...++.+....| ..|..-++.+.+.|++++|...++++.+.+ .||..+-..-+.-..+++..++|.++..+..+
T Consensus 389 ~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 389 VALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTR 467 (700)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhh
Confidence 77777777766633 334444566677777777777777776554 23444444555555666777777777666655
Q ss_pred cc
Q 012804 452 AK 453 (456)
Q Consensus 452 ~~ 453 (456)
.+
T Consensus 468 ~~ 469 (700)
T KOG1156|consen 468 EG 469 (700)
T ss_pred cc
Confidence 44
No 55
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.64 E-value=1.4e-10 Score=101.66 Aligned_cols=430 Identities=14% Similarity=0.101 Sum_probs=285.7
Q ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 012804 8 RLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGA 87 (456)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 87 (456)
++.....-.+...|+-++|.......++.++. +.+.|..+.-.+....++++|+..|......+ +.|...+..+.-.-
T Consensus 42 eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ 119 (700)
T KOG1156|consen 42 ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQ 119 (700)
T ss_pred hhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 34444444566779999999999999987764 88899999999999999999999999999875 44677787777777
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChhHHHHH------HHHHHhc
Q 012804 88 TRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGD-LTPCTATFNIM------LNGLCKN 160 (456)
Q Consensus 88 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l------~~~~~~~ 160 (456)
++.++++........+.+..+ .....|..+..++.-.|+...|..+++...+.. ..|+...+... .....+.
T Consensus 120 ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~ 198 (700)
T KOG1156|consen 120 IQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEA 198 (700)
T ss_pred HHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 788888888888777777532 255678888888899999999999999988764 24555555433 2345678
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH-HHHhcCchhHHH-H
Q 012804 161 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGL-E 238 (456)
Q Consensus 161 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~-~ 238 (456)
|..++|++.+...... +......-..-...+.+.+++++|..++..+... .||...|...+. ++.+-.+.-++. .
T Consensus 199 g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ 275 (700)
T KOG1156|consen 199 GSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKA 275 (700)
T ss_pred ccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 8889998888766554 2222233344567788999999999999999885 456666555444 443233333333 5
Q ss_pred HHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---
Q 012804 239 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK--- 315 (456)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 315 (456)
+|....+.- +........-+.......-.+....++....+.|+++ ++..+...|-.-...+-..++.-.+..
T Consensus 276 ly~~ls~~y-~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~ 351 (700)
T KOG1156|consen 276 LYAILSEKY-PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLS 351 (700)
T ss_pred HHHHHhhcC-cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcc
Confidence 555554431 1111111111111111222334455667777777654 333444333322222211111111111
Q ss_pred -cC----------CCcCHH--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHH
Q 012804 316 -QG----------FECDKY--THTILIDGLCKAGNIKGARLHLEYMNKIGFDSN-LEAYNCIVDRLGKDGKIDHAINVFE 381 (456)
Q Consensus 316 -~~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 381 (456)
.| -+|... ++-.+++.+-+.|+++.|..+++.++.+ .|+ .+.|..-.+.+...|++++|..+++
T Consensus 352 ~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ 429 (700)
T KOG1156|consen 352 GTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLD 429 (700)
T ss_pred cccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 11 134433 4456778889999999999999999876 555 5666666788999999999999999
Q ss_pred HhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHH--------hHHH--HHHHHHccCChHHHHHHHHH
Q 012804 382 SMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKS--------AQKA--VVDGLRHSGCRREAKKIQSK 448 (456)
Q Consensus 382 ~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------~~~~--l~~~~~~~g~~~~A~~~~~~ 448 (456)
++.+. |...-..-+.-..+..+.++|.++.-...+.|. +.. .|-. =+.+|.++|++-+|.+-|..
T Consensus 430 ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 430 EAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred HHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 98887 333333567777889999999999988887764 211 1221 23578899999889888777
Q ss_pred HHh
Q 012804 449 IRM 451 (456)
Q Consensus 449 ~~~ 451 (456)
+.+
T Consensus 508 i~k 510 (700)
T KOG1156|consen 508 IEK 510 (700)
T ss_pred HHH
Confidence 654
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.63 E-value=5.8e-10 Score=97.83 Aligned_cols=432 Identities=9% Similarity=0.040 Sum_probs=289.9
Q ss_pred hHHHHHHHHHHHhhCcHHHHHHHHHHHHhcC-CCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 012804 7 TRLLNICVCTFCKANRLEKAEAIIIDGIRLG-VLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIA 85 (456)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (456)
+.+|...++.+.++|++..-...|++++..- +......|...+......+-.+.+..++++..+. ++..-+-.+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 5678888899999999999999999988753 2334558889999999999999999999999875 4445777888
Q ss_pred HHHcCCChhHHHHHHHHHHHCC------CCCCHHhHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCC--hhHHHHHH
Q 012804 86 GATRNSLLSCSLDLLDEMLEMG------IPPDVWSYNSLMHCLFQLGKPD---EANRVFQDMICGDLTPC--TATFNIML 154 (456)
Q Consensus 86 ~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~--~~~~~~l~ 154 (456)
.++..+++++|.+.+....... .+.+...|..+....++.-+.- ....++..+... -+| ...|.+|.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA 255 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence 9999999999999998876531 2335566776666666654432 233344444332 233 35789999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHhhCC
Q 012804 155 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG----------------------RLRTARWILKELGDSG 212 (456)
Q Consensus 155 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~a~~~~~~~~~~~ 212 (456)
.-|.+.|.+++|.++|++....- ....-|+.+.+.|..-. +++-....|+.+.+..
T Consensus 256 dYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 99999999999999999987652 24444555555543321 1222223333333221
Q ss_pred C-----------CCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCc------ChhhHHHHHHHHHHcCChHHHHHHH
Q 012804 213 H-----------APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF------DGFGYCTVIAAFVKIGRLKEATDYM 275 (456)
Q Consensus 213 ~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~ 275 (456)
. +.+...|..-.. ...|+..+-...+.++.+.- .| -...|..+...|-..|+++.|..+|
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 1 112223322222 23466677777777777552 22 2345777888899999999999999
Q ss_pred HHHHHCCCccC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------Cc-------CHHhHHHHHHHHHhc
Q 012804 276 EQMVTDGVQLD---IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF----------EC-------DKYTHTILIDGLCKA 335 (456)
Q Consensus 276 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~-------~~~~~~~l~~~~~~~ 335 (456)
++..+...+.- ..+|..-...-.++.+++.|+++++......- .| +...|..++..-...
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 99987644321 24455555555678889999999887753211 11 233566666666778
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC-----ChhhHHHHHHHHHc---cCChhHH
Q 012804 336 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLCK---AKRLPSA 407 (456)
Q Consensus 336 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~---~~~~~~A 407 (456)
|-++....+++++++..+. ++.+.......+....-++++.+++++-+.. -...|+..+.-+.+ ....+.|
T Consensus 491 gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 8999999999999988644 4444445555666777899999999987776 33566666655543 4468899
Q ss_pred HHHHHHHHHcCCCCCHH--hHHHHHHHHHccCChHHHHHHHHHHHh
Q 012804 408 SKLLLSCLKSGVRILKS--AQKAVVDGLRHSGCRREAKKIQSKIRM 451 (456)
Q Consensus 408 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 451 (456)
..+|+++++ |.+|... +|......-.+.|.-..|..++++...
T Consensus 570 RdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 570 RDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999998 4555432 233333344557888888888888644
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=9.2e-12 Score=107.20 Aligned_cols=282 Identities=12% Similarity=-0.015 Sum_probs=188.9
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 012804 144 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 223 (456)
Q Consensus 144 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 223 (456)
..+......-..-+...+++.+..++.+.+.+. .++....+..-|.++...|+..+-..+=.++.+.- +-.+.+|-.+
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 334444555556666777888888888877766 45566666666667777777766666666666543 3366777777
Q ss_pred HHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCH
Q 012804 224 MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 303 (456)
Q Consensus 224 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 303 (456)
.-.|...|+.++|.+.|.+....+ +.-...|-.+...|.-.|..++|+..+....+. ++-....+.-+..-|.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccH
Confidence 777777788888888888777654 333456667777777778888888777766654 111222233455567777888
Q ss_pred HHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--C----CCCCHHHHHHHHHHHHhCCCHHHHH
Q 012804 304 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI--G----FDSNLEAYNCIVDRLGKDGKIDHAI 377 (456)
Q Consensus 304 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~----~~~~~~~~~~l~~~~~~~g~~~~a~ 377 (456)
+.|.+.|.+..... +.|+..++.+.-.....+.+.+|..+|+..+.. . .+.-..+++.|+.+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 88888887777652 336666777666666677788888888776522 0 0112345677777888888888888
Q ss_pred HHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 012804 378 NVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 432 (456)
Q Consensus 378 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 432 (456)
..+++.... +..++.+++-.|...|+++.|++.|.+.+ .+.|+..+...++..
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHH
Confidence 888876654 77778888888888888888888888877 446666555555443
No 58
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=2.7e-11 Score=98.37 Aligned_cols=402 Identities=11% Similarity=0.081 Sum_probs=210.6
Q ss_pred HHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCCh
Q 012804 14 VCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLL 93 (456)
Q Consensus 14 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 93 (456)
++-+....++..|+.+++-....+-.-...+-.-+..++...|++++|...+..+.+.. .++...+..|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 44555566666666666654433322111222223344456666666666666655432 33444444444444444555
Q ss_pred hHHHHHHHHHHHCC-------------------------CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 012804 94 SCSLDLLDEMLEMG-------------------------IPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTA 148 (456)
Q Consensus 94 ~~a~~~~~~~~~~~-------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 148 (456)
.+|..+-.+..+.. +.....--.+|.......-.+.+|++++.+.... .|.-.
T Consensus 108 ~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~ 185 (557)
T KOG3785|consen 108 IEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYI 185 (557)
T ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chhhh
Confidence 55544433322100 0001111223334434444567788888877754 33444
Q ss_pred HHHH-HHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHh--------------hCCC
Q 012804 149 TFNI-MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG--------------DSGH 213 (456)
Q Consensus 149 ~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------~~~~ 213 (456)
..|. +.-+|.+..-++-+.++++-..+. ++.+....|.......+.=.-..|.+-.+.+. +.+.
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNL 264 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNL 264 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCe
Confidence 4443 335666777777777777776665 34344444444333322111111111111111 1000
Q ss_pred ------------CC-----CHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcC-------ChH
Q 012804 214 ------------AP-----NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG-------RLK 269 (456)
Q Consensus 214 ------------~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~ 269 (456)
-| -+..-..++-.|.+.++..+|..+.+++. |.++.-|-.-.-.+...| ...
T Consensus 265 VvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlK 340 (557)
T KOG3785|consen 265 VVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLK 340 (557)
T ss_pred EEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 01 11222334445667788888777766554 333333322222223333 234
Q ss_pred HHHHHHHHHHHCCCccCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 012804 270 EATDYMEQMVTDGVQLDIV-SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 348 (456)
Q Consensus 270 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 348 (456)
-|...|+..-.++..-|.. --..+...+.-..++++++..++.+...- ..|......+.++.+..|++.+|+++|-++
T Consensus 341 iAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 341 IAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhh
Confidence 4555555544443222211 12344555556667888888888887652 334444446778888889999999998887
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC-Ch-hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhH
Q 012804 349 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-DS-FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 426 (456)
Q Consensus 349 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 426 (456)
....+..+..-...|..+|.++++++.|+.++-++..+ +. .....+...|.+.+++=-|.+.|+.+... .|++..|
T Consensus 420 s~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 420 SGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred cChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 66554544444566777889999999999888877665 33 33444556777777777777777766544 3444433
No 59
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=2.9e-10 Score=98.73 Aligned_cols=415 Identities=13% Similarity=0.014 Sum_probs=234.9
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCC
Q 012804 13 CVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSL 92 (456)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 92 (456)
=++.+...|++++|++....++..++ -+...+..-+-++++.++|++|+.+.+.-... ..+...+---.-+.-+.+.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~p-dd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVP-DDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCC-CcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHccc
Confidence 35677888999999999999998763 46667888888899999999999665543211 1111111111223347899
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh--HHHHHHHHHHhcCChHHHHHHH
Q 012804 93 LSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTA--TFNIMLNGLCKNRYTDNALRMF 170 (456)
Q Consensus 93 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~ 170 (456)
.++|+..++-..+ .+..+...-...+.+.|++++|.++|+.+.+.+. ++.. .-..++.+-. .-.+. +.
T Consensus 95 ~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd~d~~~r~nl~a~~a----~l~~~-~~ 164 (652)
T KOG2376|consen 95 LDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DDQDEERRANLLAVAA----ALQVQ-LL 164 (652)
T ss_pred HHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHH----hhhHH-HH
Confidence 9999999882222 2344666677889999999999999999987652 2211 1111111100 00010 11
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC-------CCCCCHH-------HHHHHHHHHHhcCchhHH
Q 012804 171 RGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS-------GHAPNAI-------TYTTIMKCCFRNRKYKLG 236 (456)
Q Consensus 171 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~-------~~~~l~~~~~~~~~~~~a 236 (456)
+..... ...+-..+......+...|++.+|+++++..... +-.-+.. .-..+...+...|+..+|
T Consensus 165 q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 111111 0001111222233455667777777776665211 0000000 111233344556777777
Q ss_pred HHHHHHHHHcCCCcChhhHH----HHHHH---------------------------------------------HHHcCC
Q 012804 237 LEILSAMKRKGYTFDGFGYC----TVIAA---------------------------------------------FVKIGR 267 (456)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~----~l~~~---------------------------------------------~~~~~~ 267 (456)
..++...++.. ++|..... .++.. ..-.+.
T Consensus 244 ~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk 322 (652)
T KOG2376|consen 244 SSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNK 322 (652)
T ss_pred HHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77776666654 33321111 11100 000111
Q ss_pred hHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHH
Q 012804 268 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCK--EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 345 (456)
Q Consensus 268 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 345 (456)
.+.+.++..... +..|. ..+..++....+ ...+..+.+++...-+....-+..+....++.....|+++.|..++
T Consensus 323 ~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 323 MDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred HHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 122222211111 11222 233333333222 2246677777777766533323456666777788999999999999
Q ss_pred H--------HHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC----------ChhhHHHHHHHHHccCChhHH
Q 012804 346 E--------YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----------DSFTYSSMVHNLCKAKRLPSA 407 (456)
Q Consensus 346 ~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A 407 (456)
. .+.+.+..| .+...+...+.+.++.+.|..++.++... -...+..++..-.+.|+-++|
T Consensus 400 ~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 9 555544444 45666777888888877787777776654 112333344444578999999
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 012804 408 SKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 449 (456)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 449 (456)
..+++++++.. ++|..+...++.+|++. +.+.|..+-+++
T Consensus 478 ~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 478 SSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 99999999875 45888888899888765 456666554443
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.59 E-value=7e-12 Score=116.35 Aligned_cols=269 Identities=9% Similarity=-0.017 Sum_probs=186.4
Q ss_pred CCCHHhHHHHHHHHHc-----cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHH---------cCCChhHHHHHHHHHH
Q 012804 39 LPDVVTYNMLIDAYCQ-----FVSFDAGYTILNRMREAGISPDVVTYNSLIAGAT---------RNSLLSCSLDLLDEML 104 (456)
Q Consensus 39 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 104 (456)
..+...|...+..... .+++++|.+.|++..+.. +.+...|..+..++. ..+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4466666555555322 234678999999988763 223455655554443 2345789999999998
Q ss_pred HCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHH
Q 012804 105 EMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVT 184 (456)
Q Consensus 105 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 184 (456)
+.++. +...+..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|+..+++..+.... +...
T Consensus 332 ~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 87643 67788888888899999999999999998876 666778888889999999999999999999887322 3333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHH
Q 012804 185 YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 264 (456)
Q Consensus 185 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 264 (456)
+..++..+...|++++|...++++.....+-++..+..+..++...|+.++|...+.++.... +.+......+...+..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhc
Confidence 344455566788999999999888765433345566777888889999999999998876552 3334445555566666
Q ss_pred cCChHHHHHHHHHHHHCC-CccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012804 265 IGRLKEATDYMEQMVTDG-VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 317 (456)
Q Consensus 265 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 317 (456)
.| +.+...++.+.+.. ..+.. ...+...|.-.|+.+.+..+ +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNN--PGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcC--chHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66 47777777766541 11111 12244556667887777666 7777653
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.2e-09 Score=89.29 Aligned_cols=184 Identities=14% Similarity=0.093 Sum_probs=77.0
Q ss_pred hcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHH
Q 012804 229 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL 308 (456)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 308 (456)
...++..|+.+.++.++.+ +-+...+-.-...+...+++++|.-.|+...... +-+..+|..|+.+|...|.+.+|.-
T Consensus 312 ~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHH
Confidence 3344444444444444333 2233333333344444445555444444444331 1244445555555555555554444
Q ss_pred HHHHHHHcCCCcCHHhHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHhcc
Q 012804 309 LLDEMEKQGFECDKYTHTILI-DGLC-KAGNIKGARLHLEYMNKIGFDSN-LEAYNCIVDRLGKDGKIDHAINVFESMEV 385 (456)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 385 (456)
+-+...+. +..+..++..+. ..|. ...--++|.++++..++. .|+ ......+...+...|...+++.++++...
T Consensus 390 ~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 390 LANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred HHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 44443332 122333333331 1111 111124444444444432 222 23334444444445555555555544433
Q ss_pred C--ChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 012804 386 K--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 417 (456)
Q Consensus 386 ~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 417 (456)
. |....+.|+..+...+.+++|++.|..++..
T Consensus 467 ~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 467 IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3 4444444444444455555555555544433
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.57 E-value=6.6e-12 Score=104.24 Aligned_cols=201 Identities=14% Similarity=0.032 Sum_probs=135.0
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 012804 41 DVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMH 120 (456)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 120 (456)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 34566667777777777777777777776553 334556666777777777777777777777765432 4556666777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHH
Q 012804 121 CLFQLGKPDEANRVFQDMICGDL-TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 199 (456)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 199 (456)
.+...|++++|.+.+++...... +.....+..+..++...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 77777777777777777765421 2234455666677777777777777777776652 234556667777777778888
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 012804 200 TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR 245 (456)
Q Consensus 200 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 245 (456)
+|...+++.... .+.+...+..+...+...|+.+.|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 887777777665 233555556666777777777777777666654
No 63
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.56 E-value=1.1e-11 Score=112.07 Aligned_cols=274 Identities=14% Similarity=0.121 Sum_probs=169.5
Q ss_pred HHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 012804 29 IIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGI 108 (456)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 108 (456)
++-.+...|+.|+..+|..+|.-|+..|+.+.|- +|..|.-...+.+...++.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4555666788888888888888888888888887 7877777666677777888887777777776665
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCcHHHHHH
Q 012804 109 PPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQK-HGFVPELVTYNI 187 (456)
Q Consensus 109 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ 187 (456)
.|.+.+|..|...|...||... .+..++ ....+...+...|.-.....++..+.- .+.-||.. .
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n 144 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---N 144 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---H
Confidence 4677788888888888888655 222221 112223334444444444444433221 12223322 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCC
Q 012804 188 LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 267 (456)
Q Consensus 188 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 267 (456)
.+......|-++.+++++..+....... +... +++-+.....+ ..++........-.+++.++..++.+-...|+
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~-p~~v--fLrqnv~~ntp--vekLl~~cksl~e~~~s~~l~a~l~~alaag~ 219 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNA-PFQV--FLRQNVVDNTP--VEKLLNMCKSLVEAPTSETLHAVLKRALAAGD 219 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccc-hHHH--HHHHhccCCch--HHHHHHHHHHhhcCCChHHHHHHHHHHHhcCc
Confidence 3334455566666666665543321111 1111 23333322222 22222222222115777888888888888888
Q ss_pred hHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCC
Q 012804 268 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 337 (456)
Q Consensus 268 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 337 (456)
.+.|..++..|.+.|++.+..-|..++-+ .++...+..++..|.+.|+.|+..|+...+..+...|.
T Consensus 220 ~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 220 VDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 88888888888888888777777777655 67777777788888888888888888777776666443
No 64
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.56 E-value=4.2e-10 Score=100.80 Aligned_cols=436 Identities=14% Similarity=0.034 Sum_probs=245.1
Q ss_pred HHHHHH-HHHHhhCcHHHHHHHHHHHHh----cCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHH
Q 012804 9 LLNICV-CTFCKANRLEKAEAIIIDGIR----LGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSL 83 (456)
Q Consensus 9 ~~~~l~-~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (456)
.+..+| ..+....+.+++.-..-.+.+ .....+...|..+.-+....|++..+.+.|++....-+ .....|..+
T Consensus 285 ~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~ 363 (799)
T KOG4162|consen 285 ILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQL 363 (799)
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHH
Confidence 333444 344555566666544333332 23445667777777777778888888877777664322 244556777
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCC-CHHhHHHHHHHHH-hcCChhHHHHHHHHHHhC--CC--CCChhHHHHHHHHH
Q 012804 84 IAGATRNSLLSCSLDLLDEMLEMGIPP-DVWSYNSLMHCLF-QLGKPDEANRVFQDMICG--DL--TPCTATFNIMLNGL 157 (456)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~ 157 (456)
...+...|.-..|+.+++.-......| +...+...-..|. +.+..++++++-.++++. +. ......+..+.-+|
T Consensus 364 als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y 443 (799)
T KOG4162|consen 364 ALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAY 443 (799)
T ss_pred HHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Confidence 777777777777777777665543223 3333333333333 335666666666655541 10 11223343333333
Q ss_pred Hhc-----------CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 012804 158 CKN-----------RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 226 (456)
Q Consensus 158 ~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 226 (456)
... ....++++.+++..+.+.. |+.....+.--|+..++.+.|.+...+..+.+..-+...|..+.-.
T Consensus 444 ~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALv 522 (799)
T KOG4162|consen 444 GFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALV 522 (799)
T ss_pred HhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 321 1235677777777665322 3333333444466677788888887777776556677777777777
Q ss_pred HHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC------------------------
Q 012804 227 CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG------------------------ 282 (456)
Q Consensus 227 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------ 282 (456)
+...+++..|+.+.+.....- +.|......-+..-...++.+++......++..-
T Consensus 523 lSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~l 601 (799)
T KOG4162|consen 523 LSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHL 601 (799)
T ss_pred HhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhccccc
Confidence 777778888887777766541 1111111111222223455555554444433210
Q ss_pred ----CccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--C------HHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012804 283 ----VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC--D------KYTHTILIDGLCKAGNIKGARLHLEYMNK 350 (456)
Q Consensus 283 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 350 (456)
..-.+.++..+.......+. .+..-.. +......| + ...|......+.+.++.++|...+.++..
T Consensus 602 a~~q~~~a~s~sr~ls~l~a~~~~--~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~ 678 (799)
T KOG4162|consen 602 ALSQPTDAISTSRYLSSLVASQLK--SAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK 678 (799)
T ss_pred CcccccccchhhHHHHHHHHhhhh--hcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Confidence 00001111111111000000 0000000 11111111 1 12344455566777777888777777766
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHH--HHHHHHHcCCCCCHHh
Q 012804 351 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASK--LLLSCLKSGVRILKSA 425 (456)
Q Consensus 351 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~--~~~~~~~~~~~~~~~~ 425 (456)
. .+.....|...+..+...|...+|.+.|..+... ++.+..+++..+.+.|+..-|.. ++..+++.++. +...
T Consensus 679 ~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~ea 756 (799)
T KOG4162|consen 679 I-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEA 756 (799)
T ss_pred c-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHH
Confidence 5 2555667777777777888888888888776655 55667777888888887777776 88888877644 7888
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhc
Q 012804 426 QKAVVDGLRHSGCRREAKKIQSKIRMA 452 (456)
Q Consensus 426 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 452 (456)
|..++..+.+.|+.+.|...|.-..+.
T Consensus 757 W~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 757 WYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 888888888888888888877766554
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=1.2e-12 Score=104.84 Aligned_cols=225 Identities=11% Similarity=0.007 Sum_probs=110.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc
Q 012804 186 NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 265 (456)
Q Consensus 186 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (456)
+.+.++|.+.|.+.+|.+.++..... .|-+.||..|-+.|.+..+++.|+.++.+-.+.- |.+.....-+.+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 34455555555555555555544442 2334444445555555555555555555554442 33333334444445555
Q ss_pred CChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHH
Q 012804 266 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 345 (456)
Q Consensus 266 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 345 (456)
++.++|.++++...+.. +.++.....+...|.-.++++-|+..++++...|+. +...|..+.-+|.-.++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 55555555555555442 124444444444555555555555555555555543 4455555555555555555555555
Q ss_pred HHHHhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 012804 346 EYMNKIGFDSN--LEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCL 415 (456)
Q Consensus 346 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 415 (456)
+++...--.|+ ..+|..+.......|++..|.+.|+-.... +...++.|...-.+.|+.++|..++..+.
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 55443322222 344444544445555555555555544433 33445555544455555555555555444
No 66
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=1.6e-10 Score=94.09 Aligned_cols=185 Identities=14% Similarity=0.113 Sum_probs=115.5
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCh
Q 012804 49 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 128 (456)
Q Consensus 49 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 128 (456)
+.-+....++..|+.+++.-...+-+....+-.-+..++...|++++|...+..+.... .++...+..|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 44455678999999999887654433233344446677889999999999999888753 45666777788888888999
Q ss_pred hHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012804 129 DEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 208 (456)
Q Consensus 129 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 208 (456)
.+|..+-.... .++-.-..|.....+.++-++...+-+.+.+. ...--+|.......-.+++|++++.+.
T Consensus 108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99988866543 22333344445555666666666555555432 122233444444445677777777777
Q ss_pred hhCCCCCCHHHHHHHH-HHHHhcCchhHHHHHHHHHHHc
Q 012804 209 GDSGHAPNAITYTTIM-KCCFRNRKYKLGLEILSAMKRK 246 (456)
Q Consensus 209 ~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~ 246 (456)
...+ |.....+..+ -+|.+..=++.+.+++....+.
T Consensus 178 L~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 178 LQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 6532 3444444333 3444555556666666666554
No 67
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.55 E-value=4.6e-12 Score=114.57 Aligned_cols=275 Identities=16% Similarity=0.154 Sum_probs=193.8
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 012804 63 TILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGD 142 (456)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 142 (456)
.++..+...|+.|+..||..+|.-||..|+.+.|- +|.-|.-...+.+...++.++......++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35666778889999999999999999999999888 8888888888888888999988888888877665
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCCCCCHHHHH
Q 012804 143 LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD-SGHAPNAITYT 221 (456)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~ 221 (456)
.|.+.+|..+..+|...||... |+...+ ....+...+...|.......++..+.- .+..||..+.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~- 145 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA- 145 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH-
Confidence 6778899999999999998876 322222 122234445555655555555544322 2233444433
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcC
Q 012804 222 TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 301 (456)
Q Consensus 222 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 301 (456)
+......|-++.+++++..+.... ...+... +++-+.. ...-.+++........-.|++.+|..++.+-...|
T Consensus 146 --illlv~eglwaqllkll~~~Pvsa-~~~p~~v--fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 146 --ILLLVLEGLWAQLLKLLAKVPVSA-WNAPFQV--FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAG 218 (1088)
T ss_pred --HHHHHHHHHHHHHHHHHhhCCccc-ccchHHH--HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcC
Confidence 233344566666666665544321 1111111 2333322 22333444444433322589999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 012804 302 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 372 (456)
Q Consensus 302 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 372 (456)
+.+.|..++.+|.+.|++.+.+-|..|+-+ .++...++.+++.|...|+.|+.+++...+..+...|.
T Consensus 219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999999999999999999999988888755 88889999999999999999999999888777766444
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.55 E-value=9.3e-12 Score=103.34 Aligned_cols=198 Identities=13% Similarity=0.043 Sum_probs=147.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 012804 252 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 331 (456)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 331 (456)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 4455566677777788888888887777653 22566677777778888888888888887776532 245566777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHH
Q 012804 332 LCKAGNIKGARLHLEYMNKIGF-DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSA 407 (456)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A 407 (456)
+...|++++|...++.+..... +.....+..+..++...|++++|.+.+++.... +...+..++..+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 7888888888888888776421 223456667777888888888888888877665 456777888888899999999
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhc
Q 012804 408 SKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 452 (456)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 452 (456)
...++++.+. .+.+...+..++..+...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999998876 3446677777888888899999999988877654
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.55 E-value=9.9e-12 Score=115.35 Aligned_cols=264 Identities=11% Similarity=-0.013 Sum_probs=186.6
Q ss_pred cHHHHHHHHHHHHH-----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH---------hcCchhHHHHHHHHHHHc
Q 012804 181 ELVTYNILIKGLCK-----AGRLRTARWILKELGDSGHAPNAITYTTIMKCCF---------RNRKYKLGLEILSAMKRK 246 (456)
Q Consensus 181 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~ 246 (456)
+...|...+.+... .+.+++|...|++..+..+. +...+..+..++. ..+++++|...++++.+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 44555555444211 23467899999998875433 4455555555443 234578999999999988
Q ss_pred CCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHH
Q 012804 247 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 326 (456)
Q Consensus 247 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 326 (456)
+ +.+...+..+...+...|++++|...+++.++.++. +...+..+...+...|++++|...+++..+.+.. +...+.
T Consensus 334 d-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 334 D-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 6 667788888888889999999999999999987543 6777888899999999999999999999886433 223333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCC
Q 012804 327 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKR 403 (456)
Q Consensus 327 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 403 (456)
.++..+...|++++|...++++.....+.+...+..+..++...|+.++|...+.++... +....+.+...|...|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS- 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH-
Confidence 444456678999999999999876532334566777888899999999999999987765 3344555666667777
Q ss_pred hhHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhcc
Q 012804 404 LPSASKLLLSCLKS-GVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 453 (456)
Q Consensus 404 ~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 453 (456)
++|...++++.+. .-.+....+ ....+.-.|+.+.+..+ +++.+.+
T Consensus 490 -~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 -ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred -HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4788877777654 222332333 34445556777777666 7666543
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=1.5e-12 Score=104.30 Aligned_cols=233 Identities=12% Similarity=0.005 Sum_probs=187.3
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 012804 216 NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 295 (456)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 295 (456)
|..--..+.++|.+.|-+.+|.+.++..++. .|.+.+|..+-..|.+..+++.|..++.+-++. .+.++.....+.+
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 3333456778889999999999988888876 566778888888999999999999999888876 4446666667778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 012804 296 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 375 (456)
Q Consensus 296 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 375 (456)
.+-..++.++|.++++...+.. ..+.+....+...|.-.++++-|..++++++..| ..+.+.|..+.-+|.-.+.+|-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhh
Confidence 8888899999999999888763 3366677777778888889999999999999888 4567888888888888999999
Q ss_pred HHHHHHHhccC------ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 012804 376 AINVFESMEVK------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 449 (456)
Q Consensus 376 a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 449 (456)
++.-|+++... -..+|..+.......|++.-|.+.|+-++..+.. +...++.+.-.-.+.|+.++|+.+++..
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 98888877654 4567888888888899999999999888877544 6788888888888899999999988877
Q ss_pred Hhccc
Q 012804 450 RMAKI 454 (456)
Q Consensus 450 ~~~~~ 454 (456)
....+
T Consensus 456 ~s~~P 460 (478)
T KOG1129|consen 456 KSVMP 460 (478)
T ss_pred hhhCc
Confidence 65443
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=2.4e-09 Score=89.09 Aligned_cols=268 Identities=10% Similarity=-0.043 Sum_probs=114.7
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHH
Q 012804 179 VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 258 (456)
Q Consensus 179 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 258 (456)
+.|......+...+...|+.++|...|++....++. +........-.+.+.|+.+....+...+.... .-+...|-.-
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 334444444555555555555555555544332110 11111112222334444444444444444321 1111112222
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCH
Q 012804 259 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 338 (456)
Q Consensus 259 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 338 (456)
+.......++..|..+-++.++.+.. +...+..-...+...|++++|.-.|+...... +-+..+|..|+..|...|.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 22233344555555555555443222 33333333344445555555555555544431 12444555555555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hCCCHHHHHHHHHHhccCC---hhhHHHHHHHHHccCChhHHHHHHHH
Q 012804 339 KGARLHLEYMNKIGFDSNLEAYNCIV-DRLG-KDGKIDHAINVFESMEVKD---SFTYSSMVHNLCKAKRLPSASKLLLS 413 (456)
Q Consensus 339 ~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~ 413 (456)
.+|...-+...+. ++.+..+...+. ..+. ...--++|.+++++....+ ......+...+...|....++.++++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 5555544444332 233444443332 2221 1222344555555444432 22333444445555555555555555
Q ss_pred HHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhcc
Q 012804 414 CLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 453 (456)
Q Consensus 414 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 453 (456)
.+.. .||....+.+++.+...+.+++|...|....+.+
T Consensus 464 ~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 464 HLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 5432 3455555555555555555555555555544443
No 72
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.52 E-value=1.5e-08 Score=89.25 Aligned_cols=363 Identities=11% Similarity=0.075 Sum_probs=198.4
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC----------------------hhHHHHHH
Q 012804 78 VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK----------------------PDEANRVF 135 (456)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------~~~a~~~~ 135 (456)
..|++|...|.+.|.+++|.++|++....- .++.-|..+.+.|+.... ++-...-|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 346777777788888888888877776632 233344445554443211 12222233
Q ss_pred HHHHhCC-----------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc------HHHHHHHHHHHHHcCCH
Q 012804 136 QDMICGD-----------LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE------LVTYNILIKGLCKAGRL 198 (456)
Q Consensus 136 ~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~ 198 (456)
+.+.... -+.++..|..- .-...|+..+....+.+..+. +.|. ...|..+.+.|-..|++
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 3333221 01122222222 222345566666667666554 2222 24567778888888888
Q ss_pred HHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCC-----------c------ChhhHHHH
Q 012804 199 RTARWILKELGDSGHAPN---AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-----------F------DGFGYCTV 258 (456)
Q Consensus 199 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~------~~~~~~~l 258 (456)
+.|..+|++..+...+.- ..+|..-...-.+..+++.|+++.++.....-. + +...|...
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 888888888776543321 233444445555677788888877776532111 1 22334445
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HhHHHHHHHHHh---
Q 012804 259 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK-YTHTILIDGLCK--- 334 (456)
Q Consensus 259 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~--- 334 (456)
+...-..|-++....+++.+++..+. ++.........+-.+.-++++.+++++-+..-..|+. ..|+..+..+.+
T Consensus 484 ~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 55555667888888888888876554 3433333333444566677888888776654334443 345555544432
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhCCCHHHHHHHHHHhccC-----ChhhHHHHHHHHHccCChhHH
Q 012804 335 AGNIKGARLHLEYMNKIGFDSNLEAYNCIV--DRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLCKAKRLPSA 407 (456)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A 407 (456)
....+.|..+|++.++ +.+|...-+..|+ ..-.+-|-...|+++++++... ....|+..|.--...=-+...
T Consensus 563 g~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~T 641 (835)
T KOG2047|consen 563 GTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRT 641 (835)
T ss_pred CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCccc
Confidence 2357889999999888 5555432222222 2223457788888888887655 233455444433332233444
Q ss_pred HHHHHHHHHcCCCCCHHhH---HHHHHHHHccCChHHHHHHHHHH
Q 012804 408 SKLLLSCLKSGVRILKSAQ---KAVVDGLRHSGCRREAKKIQSKI 449 (456)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~ 449 (456)
..+|+++++. -|+...- ......-.+.|..+.|+.++.--
T Consensus 642 R~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~ 684 (835)
T KOG2047|consen 642 REIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHG 684 (835)
T ss_pred HHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 5566666554 2233221 12334445566666666665443
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.51 E-value=7.2e-10 Score=99.59 Aligned_cols=260 Identities=12% Similarity=0.070 Sum_probs=127.5
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc--
Q 012804 48 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQL-- 125 (456)
Q Consensus 48 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 125 (456)
....+...|++++|++.++.-... +.............+.+.|+.++|..++..++++++. |..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcc
Confidence 345556778888888777665443 2333445566677777778888888888888777632 343444444444222
Q ss_pred ---CChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHH
Q 012804 126 ---GKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYT-DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 201 (456)
Q Consensus 126 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 201 (456)
.+.+...++|+++...- |.......+.-.+.....+ ..+..++..+...|+| .+|+.+-..|.......-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 24566666777665543 3222222222222221222 2344555556666654 2344444444444444434
Q ss_pred HHHHHHHhhC----C----------CCCCH--HHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc
Q 012804 202 RWILKELGDS----G----------HAPNA--ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 265 (456)
Q Consensus 202 ~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (456)
..++...... + -+|+. .++..+...|...|++++|+++++..++.. |..+..|..-...+-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence 4444333221 0 01222 122333444445555555555555555442 22244444444555555
Q ss_pred CChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012804 266 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 316 (456)
Q Consensus 266 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 316 (456)
|++.+|.+.++.....+.. |...-+..+..+.+.|+.++|.+++....+.
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred CCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 5555555555555544332 4444444444455555555555555554443
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.50 E-value=3.2e-10 Score=101.81 Aligned_cols=288 Identities=18% Similarity=0.134 Sum_probs=148.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-----c
Q 012804 156 GLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR-----N 230 (456)
Q Consensus 156 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~ 230 (456)
.+...|++++|++.++.-... +.............+.+.|+.++|..++..+...++. +..-|..+..+... .
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccccc
Confidence 344455555555555443333 2223333444455555555555555555555554321 22222333333211 1
Q ss_pred CchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHH
Q 012804 231 RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL-KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL 309 (456)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 309 (456)
.+.+....+++.+...- |.......+.-.+.....+ ..+..++..+...|+++ +|+.+-..|.......-...+
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 13344455555554432 2211111111111111112 12334445555555432 344444444433333333333
Q ss_pred HHHHHHc----C----------CCcCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH
Q 012804 310 LDEMEKQ----G----------FECDK--YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 373 (456)
Q Consensus 310 ~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 373 (456)
+...... + -.|+. .++..+.+.|...|++++|..+++..+... |..++.|..-+..+-+.|++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCH
Confidence 3333211 0 12232 234555666777788888888888777762 33367777777777788888
Q ss_pred HHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHH------hH--HHHHHHHHccCChHHH
Q 012804 374 DHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKS------AQ--KAVVDGLRHSGCRREA 442 (456)
Q Consensus 374 ~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~~~~A 442 (456)
.+|.+.++.+... |...-+..+..+.+.|+.++|.+.+......+..|... .| ...+.+|.+.|++..|
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 8888877777666 55556666777777888888888777776554322211 11 2345678888888888
Q ss_pred HHHHHHHHh
Q 012804 443 KKIQSKIRM 451 (456)
Q Consensus 443 ~~~~~~~~~ 451 (456)
++.|..+.+
T Consensus 325 Lk~~~~v~k 333 (517)
T PF12569_consen 325 LKRFHAVLK 333 (517)
T ss_pred HHHHHHHHH
Confidence 877766654
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.48 E-value=3.6e-11 Score=106.45 Aligned_cols=236 Identities=16% Similarity=0.123 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHc-----C-CCcC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHC-----CC-
Q 012804 217 AITYTTIMKCCFRNRKYKLGLEILSAMKRK-----G-YTFD-GFGYCTVIAAFVKIGRLKEATDYMEQMVTD-----GV- 283 (456)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~- 283 (456)
..+...+...|...|+++.|..+++...+. | ..|. ....+.+...|...+++.+|..+|+++... |.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 344455666777777777777777666543 1 0122 223334667788888888888888888763 11
Q ss_pred -ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CcCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhC---C
Q 012804 284 -QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ-----GF-ECDK-YTHTILIDGLCKAGNIKGARLHLEYMNKI---G 352 (456)
Q Consensus 284 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 352 (456)
+--..+++.|..+|.+.|++++|...+++..+. +. .|.. ..++.+...|...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 112356677778889999998888887776431 11 1222 24566777788889999999888876543 1
Q ss_pred CCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHhccC-----------ChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 012804 353 FDS----NLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 417 (456)
Q Consensus 353 ~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 417 (456)
+.+ -..++..+...|...|++++|.++++++... ....++.+...|.+.+++.+|.++|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 112 2467888999999999999999999988765 2345778888999999999999888876432
Q ss_pred ----CC--CCCHHhHHHHHHHHHccCChHHHHHHHHHHHhc
Q 012804 418 ----GV--RILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 452 (456)
Q Consensus 418 ----~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 452 (456)
|+ +....+|..|+.+|...|++++|.++.+.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 32 122357888999999999999999998888754
No 76
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.4e-09 Score=93.59 Aligned_cols=399 Identities=16% Similarity=0.072 Sum_probs=241.6
Q ss_pred HHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHcCCC
Q 012804 14 VCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPD-VVTYNSLIAGATRNSL 92 (456)
Q Consensus 14 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 92 (456)
-++.+..|+++.|+..|.+.+...+. |...|..-..+|...|++++|++=-.+-.+. .|+ +..|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 35677899999999999999998865 8889999999999999999998776666654 455 5678999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHH------HHHHhC---CCCCChhHHHHHHHHHHhc---
Q 012804 93 LSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVF------QDMICG---DLTPCTATFNIMLNGLCKN--- 160 (456)
Q Consensus 93 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~------~~~~~~---~~~~~~~~~~~l~~~~~~~--- 160 (456)
+++|+..|.+-++.... +...+..+..++... . .+.+.| ..+... ........|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~ 161 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPS-NKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTS 161 (539)
T ss_pred HHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHh
Confidence 99999999998886433 566666676666111 0 001111 111000 0000111222222211110
Q ss_pred -------CChHHHHHHHHHHH-----hC-------CCCC----------------------cHHHHHHHHHHHHHcCCHH
Q 012804 161 -------RYTDNALRMFRGLQ-----KH-------GFVP----------------------ELVTYNILIKGLCKAGRLR 199 (456)
Q Consensus 161 -------~~~~~a~~~~~~~~-----~~-------~~~~----------------------~~~~~~~l~~~~~~~~~~~ 199 (456)
.....+...+.... .. +..| -..-...+.++..+..++.
T Consensus 162 l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 00111111110000 00 0011 0112344566666677777
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHH-------HHHHHHHcCChHHHH
Q 012804 200 TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT-------VIAAFVKIGRLKEAT 272 (456)
Q Consensus 200 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~ 272 (456)
.+.+.+....... -+..-++....+|...|.+..+........+.| .....-++. +..++.+.++.+.++
T Consensus 242 ~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-re~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 242 TAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG-RELRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-HHHHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 7777777766643 244445566667777777777766666655554 212222222 333555566777777
Q ss_pred HHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 012804 273 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 352 (456)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 352 (456)
..|++.+.....|+. ..+....+++........-.+... ..-...-...+.+.|++..|+..+.++++..
T Consensus 319 ~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred HHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 777776654333322 123334444444444443322221 1122222556778899999999999988875
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccCCh---hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHH
Q 012804 353 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS---FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 429 (456)
Q Consensus 353 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 429 (456)
|.|...|..-.-+|.+.|.+..|++-.+..++.++ ..|..-+.++....++++|.+.|++.++.++. +......+
T Consensus 389 -P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~-~~e~~~~~ 466 (539)
T KOG0548|consen 389 -PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS-NAEAIDGY 466 (539)
T ss_pred -CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hHHHHHHH
Confidence 77788898888999999999999888887777643 45555566777788899999999999877532 44455555
Q ss_pred HHHHH
Q 012804 430 VDGLR 434 (456)
Q Consensus 430 ~~~~~ 434 (456)
..+..
T Consensus 467 ~rc~~ 471 (539)
T KOG0548|consen 467 RRCVE 471 (539)
T ss_pred HHHHH
Confidence 55544
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.44 E-value=3.3e-10 Score=100.50 Aligned_cols=236 Identities=15% Similarity=0.095 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhC-----C-CCCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHhhC-----C--C
Q 012804 148 ATFNIMLNGLCKNRYTDNALRMFRGLQKH-----G-FVPELVT-YNILIKGLCKAGRLRTARWILKELGDS-----G--H 213 (456)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~ 213 (456)
.+...+...|...|+++.|+.+++...+. | ..|...+ .+.+...|...+++++|..+|+.+... | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33344555555555555555555544332 1 1122222 233556667777777777777665431 1 1
Q ss_pred CCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcC------CCcC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHC---CC
Q 012804 214 APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG------YTFD-GFGYCTVIAAFVKIGRLKEATDYMEQMVTD---GV 283 (456)
Q Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 283 (456)
+.-..++..|..+|.+.|++++|...++++.+.- ..+. ...++.+...+...+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1123445566667777777777776666554321 0111 123444555566666777777666655432 01
Q ss_pred cc----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC--Cc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 012804 284 QL----DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ----GF--EC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKI- 351 (456)
Q Consensus 284 ~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 351 (456)
.+ -..+++.+...|...|++++|.++++.+... +. .+ ....++.+...|.+.+.+++|.++|.+....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 11 2345666677777777777777777665432 11 11 1334566666666666666666666654321
Q ss_pred ---C--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 012804 352 ---G--FDSNLEAYNCIVDRLGKDGKIDHAINVFESM 383 (456)
Q Consensus 352 ---~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 383 (456)
| .+....+|..|+..|...|+++.|.++.+.+
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1 1122345555555666666666665555543
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.43 E-value=7e-10 Score=85.00 Aligned_cols=197 Identities=10% Similarity=-0.006 Sum_probs=108.1
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 012804 10 LNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATR 89 (456)
Q Consensus 10 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 89 (456)
...|.-.|.+.|++..|..-++++++.++. +..+|..+...|.+.|..+.|.+.|++..+.. +.+....|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 334445566666666666666666665532 44556666666666666666666666665542 2234455555555666
Q ss_pred CCChhHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHH
Q 012804 90 NSLLSCSLDLLDEMLEMG-IPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALR 168 (456)
Q Consensus 90 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 168 (456)
.|++++|...|++....- ...-..+|..+.-+..+.|+++.|...|++.+... +....+...+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 666666666666655431 11123455555555666666666666666655544 3334445555555556666666666
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 012804 169 MFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 210 (456)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 210 (456)
.++.....+. ++..+.-..|+.-...|+.+.+.++=.++..
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6655555533 4555555555555555555555554444433
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.41 E-value=3e-10 Score=96.58 Aligned_cols=225 Identities=13% Similarity=-0.050 Sum_probs=157.2
Q ss_pred HHcCCHHHHHHHHHHHhhCCC-CC--CHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChH
Q 012804 193 CKAGRLRTARWILKELGDSGH-AP--NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 269 (456)
Q Consensus 193 ~~~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (456)
...+..+.++.-+.++..... .| ....|..+...+...|+.+.|...|++..+.. +.+...+..+...+...|+++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHH
Confidence 344667778888888775322 22 23457777788889999999999999999886 667888999999999999999
Q ss_pred HHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012804 270 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 349 (456)
Q Consensus 270 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 349 (456)
+|...|+..++..+. +...+..+..++...|++++|.+.++...+.. |+..........+...++.++|...+....
T Consensus 116 ~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 116 AAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 999999999886443 56778888888899999999999999988763 333211222222345678999999997755
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhc---cC-------ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 012804 350 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---VK-------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 419 (456)
Q Consensus 350 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 419 (456)
... +|+...+ .+ .....|+...+ +.+..+. .. ...+|..++..+.+.|++++|+..|+++++.++
T Consensus 193 ~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 193 EKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred hhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 432 3332222 22 23335555433 2333332 21 346788999999999999999999999987753
Q ss_pred CCCHHhHH
Q 012804 420 RILKSAQK 427 (456)
Q Consensus 420 ~~~~~~~~ 427 (456)
. |..-+.
T Consensus 268 ~-~~~e~~ 274 (296)
T PRK11189 268 Y-NFVEHR 274 (296)
T ss_pred c-hHHHHH
Confidence 3 444333
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.40 E-value=1.1e-09 Score=93.11 Aligned_cols=222 Identities=13% Similarity=-0.002 Sum_probs=149.6
Q ss_pred HhcCChHHHHHHHHHHHhCC-CCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchh
Q 012804 158 CKNRYTDNALRMFRGLQKHG-FVPE--LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK 234 (456)
Q Consensus 158 ~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 234 (456)
...+..+.++.-+.++.... ..|+ ...|..+...+...|++++|...|.+..+..+. +...|..+...+...|+++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHH
Confidence 34466677888887777542 1222 355777777888889999999999888876543 6788888888889999999
Q ss_pred HHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012804 235 LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 314 (456)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 314 (456)
.|...++...+.. +.+...+..+..++...|++++|...++...+.++. +. ........+...+++++|...+.+..
T Consensus 116 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 116 AAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999999988775 555667777888888889999999999888876432 22 11222223345678889998887655
Q ss_pred HcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC-----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccCCh
Q 012804 315 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI-GF-----DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS 388 (456)
Q Consensus 315 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 388 (456)
... .|+... ..+ .....|+...+ ..+..+.+. .. +.....|..++..+.+.|++++|+..|+++...++
T Consensus 193 ~~~-~~~~~~-~~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 193 EKL-DKEQWG-WNI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred hhC-CccccH-HHH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 432 222221 222 23345555444 344444421 00 12245788888888999999999999998877654
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.38 E-value=2.3e-09 Score=82.22 Aligned_cols=197 Identities=15% Similarity=0.056 Sum_probs=117.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Q 012804 115 YNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK 194 (456)
Q Consensus 115 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 194 (456)
...|.-.|...|+...|..-+++.++.+ +.+..+|..+...|.+.|+.+.|.+.|++..+.. +.+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3345556666666666666666666655 4555666666666666666666666666666552 2345556666666666
Q ss_pred cCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHH
Q 012804 195 AGRLRTARWILKELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATD 273 (456)
Q Consensus 195 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 273 (456)
.|++++|...|++...... ..-..+|..+.-+..+.|+++.|...+++.++.. +-.+.....+.......|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 6666666666666554321 1123455555556666666666666666666654 3344455555666666666666666
Q ss_pred HHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012804 274 YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 315 (456)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 315 (456)
+++.....+. ++..+....|+.-...|+.+.+.+.=..+..
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666655543 5666666666666666666666555555544
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.37 E-value=2.7e-08 Score=88.22 Aligned_cols=205 Identities=8% Similarity=-0.069 Sum_probs=127.4
Q ss_pred CCCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCC-CCH-HhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHH
Q 012804 3 GKLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVL-PDV-VTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTY 80 (456)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 80 (456)
+|-.+-.|..+...+...|+.+.+...+....+.... ++. .........+...|++++|.+.+++..+.. +.+...+
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLAL 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHH
Confidence 3455666777777777788888877777776654332 122 122223344567788888888888887653 2333333
Q ss_pred HH---HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 012804 81 NS---LIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGL 157 (456)
Q Consensus 81 ~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 157 (456)
.. ........+....+.+.++.... ..+........+...+...|++++|.+.+++..... +.+...+..+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~ 158 (355)
T cd05804 81 KLHLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL 158 (355)
T ss_pred HHhHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 32 11111224445555555544111 112223344456667788888888888888888765 55566777778888
Q ss_pred HhcCChHHHHHHHHHHHhCCC-CCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 012804 158 CKNRYTDNALRMFRGLQKHGF-VPEL--VTYNILIKGLCKAGRLRTARWILKELGD 210 (456)
Q Consensus 158 ~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 210 (456)
...|++++|...+++...... .|+. ..|..+...+...|++++|..++++...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 888888888888888776422 1222 2344677778888888888888887654
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.33 E-value=4.8e-08 Score=86.60 Aligned_cols=92 Identities=18% Similarity=0.143 Sum_probs=50.7
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCc-cCH--HHHHHHHHHHH
Q 012804 222 TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ-LDI--VSYNTLINLYC 298 (456)
Q Consensus 222 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~ 298 (456)
.+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++....... ++. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 34445555666666666666666554 334445555555666666666666666665554211 111 22334555666
Q ss_pred hcCCHHHHHHHHHHHH
Q 012804 299 KEGKLEAAYLLLDEME 314 (456)
Q Consensus 299 ~~~~~~~a~~~~~~~~ 314 (456)
..|++++|..++++..
T Consensus 198 ~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 198 ERGDYEAALAIYDTHI 213 (355)
T ss_pred HCCCHHHHHHHHHHHh
Confidence 6666666666666654
No 84
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=4.9e-12 Score=75.07 Aligned_cols=40 Identities=43% Similarity=0.836 Sum_probs=14.2
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHH
Q 012804 45 YNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLI 84 (456)
Q Consensus 45 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 84 (456)
||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li 45 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILI 45 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 85
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=7.1e-12 Score=74.40 Aligned_cols=50 Identities=30% Similarity=0.583 Sum_probs=48.5
Q ss_pred CchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHc
Q 012804 5 LSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQ 54 (456)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 54 (456)
||+.+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999874
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=3.3e-08 Score=78.98 Aligned_cols=315 Identities=12% Similarity=0.084 Sum_probs=179.6
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHH-HHHHHH
Q 012804 10 LNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNS-LIAGAT 88 (456)
Q Consensus 10 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 88 (456)
+.+.+..+.+..++++|++++..-.+..++ +....+.+..+|....++..|-+.++++... .|...-|.. -...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 556666777888888888888887776643 6777788888888888888888888888765 455555543 245556
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHH
Q 012804 89 RNSLLSCSLDLLDEMLEMGIPPDVW--SYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNA 166 (456)
Q Consensus 89 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 166 (456)
+.+.+..|+.+...|.+. ++.. +...-.......+++..+..++++....+ +..+.+.......+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 777888888888777653 2221 11111222345677888888877776433 344444555556678888888
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHH----HHHHHHHHHhcCchhHHHHHHHH
Q 012804 167 LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT----YTTIMKCCFRNRKYKLGLEILSA 242 (456)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~ 242 (456)
.+-|....+-+--.....|+..+ ++.+.|+++.|+++..++.+.|+...+.. ....+.+ ...|+. ..+...
T Consensus 164 vqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~lh~S 238 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LVLHQS 238 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---HHHHHH
Confidence 88888877654333445666544 44566788888888888877776522110 0000000 000000 000000
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC
Q 012804 243 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 321 (456)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 321 (456)
.-...++.-...+.+.++++.|.+.+-+|... ....|+.|...+.-. -..+++.+..+-+.-+...++ -.
T Consensus 239 -------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP 309 (459)
T KOG4340|consen 239 -------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FP 309 (459)
T ss_pred -------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CC
Confidence 00112233333455667777777666666432 122344444433221 123344444444444444433 34
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHH
Q 012804 322 KYTHTILIDGLCKAGNIKGARLHLEY 347 (456)
Q Consensus 322 ~~~~~~l~~~~~~~~~~~~a~~~~~~ 347 (456)
..||..++-.|++..-++.|..++.+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 56677777677777666666666554
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.30 E-value=1.6e-10 Score=96.61 Aligned_cols=249 Identities=13% Similarity=0.073 Sum_probs=153.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCch
Q 012804 154 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 233 (456)
Q Consensus 154 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 233 (456)
++-+.-.|++..++.-.+ ........+......+.+++...|+++.+. ..+.... .|.......+...+....+-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 344556788888886665 322222223444556678888888877544 3333332 56666665555555443444
Q ss_pred hHHHHHHHHHHHcCCCc-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012804 234 KLGLEILSAMKRKGYTF-DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 312 (456)
Q Consensus 234 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 312 (456)
+.+..-++......... +..........+...|++++|.+++... .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45544444433332222 2222333334555678888888877643 3566777788888889999999999988
Q ss_pred HHHcCCCcCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC--
Q 012804 313 MEKQGFECDKYTHTILIDGLCK----AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 386 (456)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 386 (456)
|.+. . +..+...+..++.. .+.+.+|..+|+++.+. ++++..+.+.+..+....|++++|.+++.++...
T Consensus 157 ~~~~--~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 157 MQQI--D-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HHCC--S-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHhc--C-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 8764 2 33455555555432 23578899999987765 5678888888888888888888888888887766
Q ss_pred -ChhhHHHHHHHHHccCCh-hHHHHHHHHHHHc
Q 012804 387 -DSFTYSSMVHNLCKAKRL-PSASKLLLSCLKS 417 (456)
Q Consensus 387 -~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~ 417 (456)
++.+...++.+....|+. +.+.+.+.++...
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 667777777777777777 5566777777655
No 88
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.29 E-value=3.7e-08 Score=88.73 Aligned_cols=403 Identities=11% Similarity=0.008 Sum_probs=276.7
Q ss_pred CchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCC-CHhHHHHH
Q 012804 5 LSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISP-DVVTYNSL 83 (456)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 83 (456)
.|+.+|..+.-++...|+++.+-+.|++....-. -....|..+...+...|.-..|..+++.-......| ++..+-..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 5788999999999999999999999999987544 366789999999999999999999998876553234 34444433
Q ss_pred HHHHH-cCCChhHHHHHHHHHHHC--C--CCCCHHhHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCCCCCh
Q 012804 84 IAGAT-RNSLLSCSLDLLDEMLEM--G--IPPDVWSYNSLMHCLFQL-----------GKPDEANRVFQDMICGDLTPCT 147 (456)
Q Consensus 84 ~~~~~-~~~~~~~a~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~ 147 (456)
-..|. +.+.+++++++-.++... + -......|..+.-+|... ....++++.+++..+.+ +.|+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCc
Confidence 44444 557788888877777662 1 112334455555444432 23578899999998876 4455
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 012804 148 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 227 (456)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 227 (456)
.+...+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+.....-.. |......-+..-
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDGKIHIE 557 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchhhhhhh
Confidence 5555555667888999999999999999866678899999999999999999999999876553111 111111112222
Q ss_pred HhcCchhHHHHHHHHHHHc---------------------CC------C-cChhhHHHHHHHHHHcC---ChHHHHHHHH
Q 012804 228 FRNRKYKLGLEILSAMKRK---------------------GY------T-FDGFGYCTVIAAFVKIG---RLKEATDYME 276 (456)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~---------------------~~------~-~~~~~~~~l~~~~~~~~---~~~~a~~~~~ 276 (456)
..-++.+++......+... +. + ....++..+.......+ ..+..
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~----- 632 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK----- 632 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc-----
Confidence 2344444444433332211 00 0 01111221111111000 00100
Q ss_pred HHHHCCCc--cC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 012804 277 QMVTDGVQ--LD------IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 348 (456)
Q Consensus 277 ~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 348 (456)
+...... |+ ...|......+.+.+..++|...+.+..... +.....|......+...|..++|...|...
T Consensus 633 -Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 633 -LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred -cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 1111111 12 2345566677888999999998888887753 446778888888889999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCCHHHHHH--HHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 012804 349 NKIGFDSNLEAYNCIVDRLGKDGKIDHAIN--VFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 349 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 418 (456)
...+ |.+.....++..++.+.|+..-|.. ++..+.+. ++..|..++..+.+.|+.++|.+.|+.+.+..
T Consensus 711 l~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 711 LALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 8864 5567889999999999998777777 88888766 88999999999999999999999999998764
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=1.2e-07 Score=75.80 Aligned_cols=288 Identities=15% Similarity=0.132 Sum_probs=176.0
Q ss_pred CCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHH-HHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHH
Q 012804 4 KLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYN-MLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNS 82 (456)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (456)
|.+....+.|.-.|....++..|...++++-... |...-|. .-...+.+.+.+..|+.+...|... |+...-..
T Consensus 41 p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~l 115 (459)
T KOG4340|consen 41 PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVL 115 (459)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHH
Confidence 3366777888888999999999999999987764 3443333 2345566788999999999888753 33222222
Q ss_pred HHHH--HHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Q 012804 83 LIAG--ATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKN 160 (456)
Q Consensus 83 l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 160 (456)
-+.+ .-..+++..+..+.++....| +..+.+...-...+.|+++.|.+-|+...+.+--.....|+..+ +..+.
T Consensus 116 qLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~ 191 (459)
T KOG4340|consen 116 QLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSS 191 (459)
T ss_pred HHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhh
Confidence 2222 335788888888888876533 56666667777789999999999999988754233355666554 55678
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHH----HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHH
Q 012804 161 RYTDNALRMFRGLQKHGFVPELVT----YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 236 (456)
Q Consensus 161 ~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 236 (456)
++++.|++...++.++|++..+.. -+..+.+ ...|+.. . |..+ .-...++.-...+.+.++++.|
T Consensus 192 ~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt~---~----lh~S---al~eAfNLKaAIeyq~~n~eAA 260 (459)
T KOG4340|consen 192 RQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNTL---V----LHQS---ALVEAFNLKAAIEYQLRNYEAA 260 (459)
T ss_pred hhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccchH---H----HHHH---HHHHHhhhhhhhhhhcccHHHH
Confidence 999999999999999987522210 0000000 0000000 0 0000 0012233333445667777777
Q ss_pred HHHHHHHHHc-CCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012804 237 LEILSAMKRK-GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 313 (456)
Q Consensus 237 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 313 (456)
.+.+-.|... ....|+.+...+.-.- ..+++....+-+.-++..++ ....||..++-.||+..-++-|-.++.+-
T Consensus 261 ~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 261 QEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 7776666532 2234555554433221 23445555555555555544 34567777777788777777777776543
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=8.6e-08 Score=82.93 Aligned_cols=388 Identities=17% Similarity=0.120 Sum_probs=234.1
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCC
Q 012804 49 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPD-VWSYNSLMHCLFQLGK 127 (456)
Q Consensus 49 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 127 (456)
.++....|+++.|+..|....... ++|...|..-..+|...|++++|.+=-.+-++. .|+ ...|.-...++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 456678899999999999998875 458888999999999999999998877666664 344 4568888888889999
Q ss_pred hhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHH---HHHHHHHHhC---CCCCcHHHHHHHHHHHHHc------
Q 012804 128 PDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNA---LRMFRGLQKH---GFVPELVTYNILIKGLCKA------ 195 (456)
Q Consensus 128 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a---~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~------ 195 (456)
+++|+..|.+-++.. +.+...++.+..++.......+. -.++..+... ........|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999999988775 66677778887777211000000 0111111100 0000112233333222111
Q ss_pred ----CCHHHHHHHHHHH-----hhC-------CCCC------------C----------HHHHHHHHHHHHhcCchhHHH
Q 012804 196 ----GRLRTARWILKEL-----GDS-------GHAP------------N----------AITYTTIMKCCFRNRKYKLGL 237 (456)
Q Consensus 196 ----~~~~~a~~~~~~~-----~~~-------~~~~------------~----------~~~~~~l~~~~~~~~~~~~a~ 237 (456)
.++..+...+... ... +..| + ..-...+..+..+..+++.+.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 0111111111100 000 0011 0 011233455555666667777
Q ss_pred HHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHH-------HHHHHHhcCCHHHHHHHH
Q 012804 238 EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT-------LINLYCKEGKLEAAYLLL 310 (456)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~ 310 (456)
+-+....+.. -+..-++....+|...|.+..+...-.+..+.|.. ...-|+. +..+|.+.++++.|+..|
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 7776666654 34444555556666666666666666555554332 1222222 233444556666666666
Q ss_pred HHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHhccC---
Q 012804 311 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN-LEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 386 (456)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 386 (456)
.+.......|+. ..+....+++........-. .|. ..-...-...+.+.|++..|++.+.+++..
T Consensus 322 ~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~ 390 (539)
T KOG0548|consen 322 QKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE 390 (539)
T ss_pred HHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc
Confidence 665443222211 12223334444444433322 222 222233366788999999999999998877
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhcccC
Q 012804 387 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 455 (456)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 455 (456)
|...|.....+|.+.|.+..|++-.+..++.++ +....|..-+.++....+++.|...|.+-.+.+++
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 788999999999999999999999999987742 24556666677888888999999999888776543
No 91
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=8.3e-07 Score=77.88 Aligned_cols=393 Identities=15% Similarity=0.077 Sum_probs=232.5
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 012804 44 TYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLF 123 (456)
Q Consensus 44 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 123 (456)
..-+=++.+...|++++|.+...++...+ +.+...+..=+-+.++.+++++|+++.+.-... ..+...+--=..+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence 33445667788999999999999999875 556677777778889999999999665543211 111111122345667
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHHcCCHHHHH
Q 012804 124 QLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE-LVTYNILIKGLCKAGRLRTAR 202 (456)
Q Consensus 124 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 202 (456)
+.+..++|+..++-.. +.+..+...-...+.+.+++++|+++|+.+.+.+.+.. ...-..++.+- -...+.
T Consensus 91 rlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQVQ 162 (652)
T ss_pred HcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhHH
Confidence 8899999999988322 33344666667889999999999999999988754311 11111121111 111111
Q ss_pred HHHHHHhhCCCCCCHHHHHH---HHHHHHhcCchhHHHHHHHHHHHcCC------CcC-h-------hhHHHHHHHHHHc
Q 012804 203 WILKELGDSGHAPNAITYTT---IMKCCFRNRKYKLGLEILSAMKRKGY------TFD-G-------FGYCTVIAAFVKI 265 (456)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~-~-------~~~~~l~~~~~~~ 265 (456)
+ +......| ..+|.. ..-.+...|++.+|+++++...+.+. ..+ . ..-..+.-.+-..
T Consensus 163 -~---~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 163 -L---LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred -H---HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 1 22222222 233333 34456788999999999998833210 001 0 1122344456678
Q ss_pred CChHHHHHHHHHHHHCCCccCHHHH----HHHHHHHHhcC----------------CHHHHHHHH---------------
Q 012804 266 GRLKEATDYMEQMVTDGVQLDIVSY----NTLINLYCKEG----------------KLEAAYLLL--------------- 310 (456)
Q Consensus 266 ~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~----------------~~~~a~~~~--------------- 310 (456)
|+.++|..++..+++.+.. |.... |.++..-.... ..+.+...|
T Consensus 238 Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred cchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887432 32111 11111000000 000000000
Q ss_pred ----------HHHHH-c-CCCcCHHhHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHH
Q 012804 311 ----------DEMEK-Q-GFECDKYTHTILIDGLC--KAGNIKGARLHLEYMNKIGFDSN-LEAYNCIVDRLGKDGKIDH 375 (456)
Q Consensus 311 ----------~~~~~-~-~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 375 (456)
++... . +..| ...+..++..+. +...+..+..++....+.. +.+ ..+.-..+......|+++.
T Consensus 317 ~l~tnk~~q~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~-p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 317 ALFTNKMDQVRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGH-PEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred HHHhhhHHHHHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHH
Confidence 00011 1 1111 233444444332 2224567777777766542 333 4555666677889999999
Q ss_pred HHHHHH--------HhccC--ChhhHHHHHHHHHccCChhHHHHHHHHHHHc--CCCCCH----HhHHHHHHHHHccCCh
Q 012804 376 AINVFE--------SMEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS--GVRILK----SAQKAVVDGLRHSGCR 439 (456)
Q Consensus 376 a~~~~~--------~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~----~~~~~l~~~~~~~g~~ 439 (456)
|.+++. .+.+. .+.+...++..+.+.++.+.|..++.+++.. .-.+.. .++...+..-.+.|+-
T Consensus 395 A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 999998 33322 6777888888888988888888888877543 111222 3344444555667999
Q ss_pred HHHHHHHHHHHhcccC
Q 012804 440 REAKKIQSKIRMAKIS 455 (456)
Q Consensus 440 ~~A~~~~~~~~~~~~~ 455 (456)
++|...++++.+-+++
T Consensus 475 ~ea~s~leel~k~n~~ 490 (652)
T KOG2376|consen 475 EEASSLLEELVKFNPN 490 (652)
T ss_pred HHHHHHHHHHHHhCCc
Confidence 9999999999886543
No 92
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.25 E-value=4.6e-07 Score=74.09 Aligned_cols=316 Identities=12% Similarity=-0.001 Sum_probs=157.1
Q ss_pred hHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHH-HHHHH
Q 012804 7 TRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTY-NSLIA 85 (456)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~ 85 (456)
+.-...+...+..+|++.+|+.-|..+++.++. +-.++..-...|...|+...|+.=+....+. +||-..- -.-..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 333344445555555555555555555543321 2223333334445555555555555555543 3442211 11123
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHH
Q 012804 86 GATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDN 165 (456)
Q Consensus 86 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 165 (456)
.+.++|.++.|..-|+..++.... ..+ ...++.+.-..++- ......+..+...|+...
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s--~~~---~~eaqskl~~~~e~----------------~~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPS--NGL---VLEAQSKLALIQEH----------------WVLVQQLKSASGSGDCQN 173 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCC--cch---hHHHHHHHHhHHHH----------------HHHHHHHHHHhcCCchhh
Confidence 344555555555555555544311 100 00000000000000 011122334445566666
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 012804 166 ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR 245 (456)
Q Consensus 166 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 245 (456)
|+..+..+.+. .+-+...+..-..+|...|.+..|+.-++...+.... +..++..+-..+...|+.+.++...++.++
T Consensus 174 ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 174 AIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 66666666665 2335555555566666666666666655555443222 444444455556666666666666666665
Q ss_pred cCCCcChhh----HHHH---------HHHHHHcCChHHHHHHHHHHHHCCCccC---HHHHHHHHHHHHhcCCHHHHHHH
Q 012804 246 KGYTFDGFG----YCTV---------IAAFVKIGRLKEATDYMEQMVTDGVQLD---IVSYNTLINLYCKEGKLEAAYLL 309 (456)
Q Consensus 246 ~~~~~~~~~----~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~ 309 (456)
.+ ||... |..+ +......++|-++....+...+..+... ...+..+..++...|++.+|++.
T Consensus 252 ld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 252 LD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred cC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 42 22211 1100 1122344566666666666665533211 22344555566667777777777
Q ss_pred HHHHHHcCCCc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 012804 310 LDEMEKQGFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 352 (456)
Q Consensus 310 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 352 (456)
..+..+. .| |..++..-..+|.-...++.|+.-|+.+.+.+
T Consensus 330 C~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 330 CKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 7777664 33 36677777777777777777777777777653
No 93
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=6.6e-07 Score=81.61 Aligned_cols=418 Identities=10% Similarity=0.042 Sum_probs=210.5
Q ss_pred hHHHHHHHHHHHhhCcHHHHHHHHHHHHhc--------CC-CCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCH
Q 012804 7 TRLLNICVCTFCKANRLEKAEAIIIDGIRL--------GV-LPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDV 77 (456)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 77 (456)
-.+|..+...|.+.++.+-|.-.+-.|... .. .++ ..-..+.......|-.++|..+|.+-++
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR------- 828 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR------- 828 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-------
Confidence 356777777777776666665554444311 00 111 1112233333456667777777766654
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH----------hCC-----
Q 012804 78 VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMI----------CGD----- 142 (456)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------~~~----- 142 (456)
|..|=..|...|.|++|.++-+.=-+ +. -..||.....-+-..+|.+.|++.|++.. ...
T Consensus 829 --~DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e 903 (1416)
T KOG3617|consen 829 --YDLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE 903 (1416)
T ss_pred --HHHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence 34455566677888888776654222 21 23456666666677778888887776432 111
Q ss_pred ----CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC----------C----------CCCcHHHHHHHHHHHHHcCCH
Q 012804 143 ----LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH----------G----------FVPELVTYNILIKGLCKAGRL 198 (456)
Q Consensus 143 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~----------~~~~~~~~~~l~~~~~~~~~~ 198 (456)
-..|...|......+-..|+.+.|+.+|....+. | -..|......+.+.|-..|++
T Consensus 904 ~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v 983 (1416)
T KOG3617|consen 904 QYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDV 983 (1416)
T ss_pred HHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHH
Confidence 0123344455555555677777777777665432 0 012333444455556666666
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-------------c--CchhHHHHHHHHHHHcCCCcChhhHHHHHHHHH
Q 012804 199 RTARWILKELGDSGHAPNAITYTTIMKCCFR-------------N--RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 263 (456)
Q Consensus 199 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 263 (456)
.+|...|.+... +...|+.|-. . .+.-.|..+|++.- . -+......|-
T Consensus 984 ~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYH 1046 (1416)
T KOG3617|consen 984 VKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG---G-----YAHKAVMLYH 1046 (1416)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHH
Confidence 666655554432 1111111111 1 11111222222111 0 0112233455
Q ss_pred HcCChHHHHHHHH--------HHHHC--CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------cC------
Q 012804 264 KIGRLKEATDYME--------QMVTD--GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK----------QG------ 317 (456)
Q Consensus 264 ~~~~~~~a~~~~~--------~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~------ 317 (456)
+.|.+.+|.++-= +++.. ....|+...+....-++...++++|..++-..++ +|
T Consensus 1047 kAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee 1126 (1416)
T KOG3617|consen 1047 KAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEE 1126 (1416)
T ss_pred hhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 5565555554321 11111 2334566666666666666667766665533211 11
Q ss_pred ----------CCcCH----HhHHHHHHHHHhcCCHHHHHHHHHHH----------HhCC---------------------
Q 012804 318 ----------FECDK----YTHTILIDGLCKAGNIKGARLHLEYM----------NKIG--------------------- 352 (456)
Q Consensus 318 ----------~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~----------~~~~--------------------- 352 (456)
-.|+. ..+..+...|.++|.+..|-+-|.++ ++.|
T Consensus 1127 ~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiYImA 1206 (1416)
T KOG3617|consen 1127 FAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIYIMA 1206 (1416)
T ss_pred HHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeeccccceeeeeh
Confidence 11222 34566677788888877665544332 2222
Q ss_pred --------CCCCHHHHHHHHHHHHhC----------------------------CCHHHHHHHHHHhccC--ChhhHHHH
Q 012804 353 --------FDSNLEAYNCIVDRLGKD----------------------------GKIDHAINVFESMEVK--DSFTYSSM 394 (456)
Q Consensus 353 --------~~~~~~~~~~l~~~~~~~----------------------------g~~~~a~~~~~~~~~~--~~~~~~~l 394 (456)
+..++.+...++..|.+. |-.++|.+.+.++..+ ....++.|
T Consensus 1207 ANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kCl~ka~~k~~~~t~l~~L 1286 (1416)
T KOG3617|consen 1207 ANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQIEIEELQTYDKAMGALEEAAKCLLKAEQKNMSTTGLDAL 1286 (1416)
T ss_pred hhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 223333333333222221 3344444555554443 11222222
Q ss_pred HH------HHH-----ccCChhHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHccCChHHHHHHHHHHHhccc
Q 012804 395 VH------NLC-----KAKRLPSASKLLLSCLKSGVRIL----KSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 454 (456)
Q Consensus 395 ~~------~~~-----~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 454 (456)
-. +.. -..+..+.++-.+.+++...-|| ...+..++..+....++..|.+.+++++..-+
T Consensus 1287 q~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p 1361 (1416)
T KOG3617|consen 1287 QEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVP 1361 (1416)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCC
Confidence 11 111 12355566666666666543333 45778889999999999999999999987654
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.24 E-value=2.8e-07 Score=92.51 Aligned_cols=333 Identities=13% Similarity=0.008 Sum_probs=206.3
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC------CCC--hhHHHHHHHHH
Q 012804 86 GATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDL------TPC--TATFNIMLNGL 157 (456)
Q Consensus 86 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~ 157 (456)
.....|++..+..+++.+.......+..........+...|+++++...+......-- .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777666666542211111222333445556778999999988887654210 111 12222333556
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC----CC-CCCHHHHHHHHHHHH
Q 012804 158 CKNRYTDNALRMFRGLQKHGFVPE----LVTYNILIKGLCKAGRLRTARWILKELGDS----GH-APNAITYTTIMKCCF 228 (456)
Q Consensus 158 ~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~ 228 (456)
...|++++|...++.....-...+ ....+.+...+...|++++|...+.+.... +. .....+...+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 678999999999988766311112 123455666778899999999988877542 11 111234455667788
Q ss_pred hcCchhHHHHHHHHHHHc----CCCc---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCccCHHHHHHHHHHH
Q 012804 229 RNRKYKLGLEILSAMKRK----GYTF---DGFGYCTVIAAFVKIGRLKEATDYMEQMVTD----GVQLDIVSYNTLINLY 297 (456)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~ 297 (456)
..|+++.|...+++.... +... ....+..+...+...|++++|...+.+.... +.......+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999988877643 2111 1223344555677789999999988877653 1111233445566778
Q ss_pred HhcCCHHHHHHHHHHHHHcC--CCcCHH--hH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHH
Q 012804 298 CKEGKLEAAYLLLDEMEKQG--FECDKY--TH--TILIDGLCKAGNIKGARLHLEYMNKIGFDSN---LEAYNCIVDRLG 368 (456)
Q Consensus 298 ~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 368 (456)
...|+++.|...+....... ...... .. ...+..+...|+.+.|..++........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999888875421 111110 10 1112334557888999888777554211111 111345667788
Q ss_pred hCCCHHHHHHHHHHhccC---------ChhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 012804 369 KDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 369 ~~g~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 418 (456)
..|+.++|...++++... ...+...+..++.+.|+.++|...+.++++..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999887653 22356667788889999999999999998764
No 95
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=1.6e-07 Score=85.47 Aligned_cols=343 Identities=14% Similarity=0.062 Sum_probs=192.7
Q ss_pred HHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhC-C--------CCCCHhHHHHHHHH
Q 012804 16 TFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREA-G--------ISPDVVTYNSLIAG 86 (456)
Q Consensus 16 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~~~~~~~~~~l~~~ 86 (456)
.|...|+.+.|.+-.+-+. +...|..+..+|.+..+.+-|.-.+-.|... | -.|+ .+=......
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 4667899999998877652 5578999999999998888876665555421 1 1122 111222333
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHH
Q 012804 87 ATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNA 166 (456)
Q Consensus 87 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 166 (456)
....|.+++|..+|++-++ |..|=..|...|.+++|.++-+.=-...+ ..||......+-..++.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHH
Confidence 5578899999999988776 34455678889999999998765332222 34566666666777888888
Q ss_pred HHHHHHHHhCC-------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC----------C-----
Q 012804 167 LRMFRGLQKHG-------------------FVPELVTYNILIKGLCKAGRLRTARWILKELGDS----------G----- 212 (456)
Q Consensus 167 ~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~----- 212 (456)
++.|++...+. -..+...|......+-..|+.+.|+.+|...... |
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kA 957 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKA 957 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHH
Confidence 88877542210 1123444555555556677888877777665431 0
Q ss_pred -----CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcC--CC--cChhhHHHHHHHHHHcC--ChHHHHHHHHHHHHC
Q 012804 213 -----HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG--YT--FDGFGYCTVIAAFVKIG--RLKEATDYMEQMVTD 281 (456)
Q Consensus 213 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~--~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~ 281 (456)
-.-|......+.+.|...|++.+|..+|.++.... +. .....-..+...+...| +.-.|-++|++.--
T Consensus 958 a~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~- 1036 (1416)
T KOG3617|consen 958 ARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG- 1036 (1416)
T ss_pred HHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch-
Confidence 01233334445555666666666666655543210 00 00000001111111111 22222233332210
Q ss_pred CCccCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHH--cCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012804 282 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDE--------MEK--QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 351 (456)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (456)
-+...+..|-+.|.+.+|+++.-+ ++. .....|+...+.-..-+....++++|..++-...+.
T Consensus 1037 -------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~ 1109 (1416)
T KOG3617|consen 1037 -------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF 1109 (1416)
T ss_pred -------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 122334456677777777665322 122 222345666666666666666777766555433211
Q ss_pred ----------CC----------------CCC----HHHHHHHHHHHHhCCCHHHHHHHHHHhcc
Q 012804 352 ----------GF----------------DSN----LEAYNCIVDRLGKDGKIDHAINVFESMEV 385 (456)
Q Consensus 352 ----------~~----------------~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 385 (456)
++ .|+ ..++..+...|.++|.+..|-+-|.++-.
T Consensus 1110 ~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1110 SGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD 1173 (1416)
T ss_pred HHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh
Confidence 11 122 23566777888899998888887766543
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.20 E-value=7.1e-07 Score=73.02 Aligned_cols=311 Identities=13% Similarity=0.053 Sum_probs=171.6
Q ss_pred HhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHH---HHHHHhcCChhHHHHHHHHHHhCCCCCChhH-HHH
Q 012804 77 VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSL---MHCLFQLGKPDEANRVFQDMICGDLTPCTAT-FNI 152 (456)
Q Consensus 77 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ 152 (456)
+.-..-+...+...|++..|+.-|...++- |+..|.++ ...|...|+-.-|+.=+.+.++. +||-.. -..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ 111 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence 333444556666677777777777766653 33333333 34566677777777777766654 444221 111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCc
Q 012804 153 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 232 (456)
Q Consensus 153 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 232 (456)
-...+.+.|.+++|..=|+.+.++. |+..+- ..++.+.-..++- ......+..+...|+
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~----------------~~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEH----------------WVLVQQLKSASGSGD 170 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHH----------------HHHHHHHHHHhcCCc
Confidence 2245566777777777777766652 221110 0111110000000 011122334455667
Q ss_pred hhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012804 233 YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 312 (456)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 312 (456)
...++.....+++.. +.+...+..-..+|...|++..|+.-+....+..-. +...+-.+-..+...|+.+.++...++
T Consensus 171 ~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred hhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 777777777777664 556666666677777777777777666665554322 445555566666677777777776666
Q ss_pred HHHcCCCcCHHh----HHH---HHH------HHHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhCCCHHHH
Q 012804 313 MEKQGFECDKYT----HTI---LID------GLCKAGNIKGARLHLEYMNKIGFD---SNLEAYNCIVDRLGKDGKIDHA 376 (456)
Q Consensus 313 ~~~~~~~~~~~~----~~~---l~~------~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a 376 (456)
..+. .||... |.. +.. .....++|.++....+...+.... .....+..+-.++...|++.+|
T Consensus 249 CLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 249 CLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred HHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHH
Confidence 6654 343321 111 111 123445566666666665554211 1123344455566677777777
Q ss_pred HHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 012804 377 INVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 377 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 418 (456)
++...++... |..++---..+|.-...++.|+.-|+++.+.+
T Consensus 327 iqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 327 IQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 7777776665 45566666677777777777777777776553
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.20 E-value=5.8e-07 Score=90.22 Aligned_cols=332 Identities=8% Similarity=-0.013 Sum_probs=213.0
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC------CCc--HHHHHHHHHHH
Q 012804 121 CLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF------VPE--LVTYNILIKGL 192 (456)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~ 192 (456)
.....|+++.+...++.+.......+..........+...|+++++..++......-- .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777766552211112222334445566778999999999987754310 111 11222334556
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCchhHHHHHHHHHHHcCC---Cc--ChhhHHHHHHHHH
Q 012804 193 CKAGRLRTARWILKELGDSGHAPNA----ITYTTIMKCCFRNRKYKLGLEILSAMKRKGY---TF--DGFGYCTVIAAFV 263 (456)
Q Consensus 193 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~ 263 (456)
...|++++|...++.........+. .....+...+...|+++.|...+.+...... .+ .......+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 7899999999999987653222122 2345556667889999999999988875311 11 1234455666788
Q ss_pred HcCChHHHHHHHHHHHHC----CCc--c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCc--CHHhHHHHHHHH
Q 012804 264 KIGRLKEATDYMEQMVTD----GVQ--L-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ--GFEC--DKYTHTILIDGL 332 (456)
Q Consensus 264 ~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~~ 332 (456)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998877653 211 1 2233445566777889999999999887542 1112 233445566678
Q ss_pred HhcCCHHHHHHHHHHHHhCC--CCCCHH--HH--HHHHHHHHhCCCHHHHHHHHHHhccC---Ch----hhHHHHHHHHH
Q 012804 333 CKAGNIKGARLHLEYMNKIG--FDSNLE--AY--NCIVDRLGKDGKIDHAINVFESMEVK---DS----FTYSSMVHNLC 399 (456)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~g~~~~a~~~~~~~~~~---~~----~~~~~l~~~~~ 399 (456)
...|++++|...++.+.... ...... .. ...+..+...|+.+.|.+.+...... .. ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999998875431 111111 10 11224455689999999998776544 11 11456777888
Q ss_pred ccCChhHHHHHHHHHHHc----CCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHhc
Q 012804 400 KAKRLPSASKLLLSCLKS----GVRIL-KSAQKAVVDGLRHSGCRREAKKIQSKIRMA 452 (456)
Q Consensus 400 ~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 452 (456)
..|++++|...++++... |..++ ..++..++.++.+.|+.++|...+.+..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999998754 22222 245667788999999999999999887654
No 98
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.17 E-value=6.7e-07 Score=83.20 Aligned_cols=433 Identities=11% Similarity=0.011 Sum_probs=227.9
Q ss_pred chHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCC-CCHhHHHHHH
Q 012804 6 STRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGIS-PDVVTYNSLI 84 (456)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 84 (456)
=...|..|...|+...+...|.+.|+.+.+.+.. +..........|++..+++.|..+.-...+.... .-...|....
T Consensus 491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRG 569 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcc
Confidence 3456777788888777888888888888877643 6777788888888888888888773333222100 0011222334
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChH
Q 012804 85 AGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTD 164 (456)
Q Consensus 85 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (456)
-.|...++...++.-|+...+..+. |...|..++.+|.++|++..|.++|.+..... |.+...--...-.-+..|.+.
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHH
Confidence 4566777888888888887776544 77788888888888888888888888876553 222222222233455678888
Q ss_pred HHHHHHHHHHhC------CCCCcHHHHHHHHHHHHHcCCHHHHHHHHH-------HHhhCCCCCCHHHHHHHHHHHH---
Q 012804 165 NALRMFRGLQKH------GFVPELVTYNILIKGLCKAGRLRTARWILK-------ELGDSGHAPNAITYTTIMKCCF--- 228 (456)
Q Consensus 165 ~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-------~~~~~~~~~~~~~~~~l~~~~~--- 228 (456)
+++..+..+... +...-..++-.+...+.-.|-...+.+.++ -........+...|..+-.+|.
T Consensus 648 eald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~ 727 (1238)
T KOG1127|consen 648 EALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFS 727 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHH
Confidence 888877776543 111111222222222222222222222222 2111111112222222211111
Q ss_pred --------------------hcCch---h---HHHHHHHHHHHcCCCcChhhHHHHHHHHHH----c----CChHHHHHH
Q 012804 229 --------------------RNRKY---K---LGLEILSAMKRKGYTFDGFGYCTVIAAFVK----I----GRLKEATDY 274 (456)
Q Consensus 229 --------------------~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~----~~~~~a~~~ 274 (456)
..+.. + .+.+.+-.-.. ...+...|..++..|.+ . .+...|...
T Consensus 728 q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c 805 (1238)
T KOG1127|consen 728 QEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRC 805 (1238)
T ss_pred HhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHH
Confidence 11111 1 00011100000 11122233333333332 1 123456666
Q ss_pred HHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 012804 275 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 354 (456)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 354 (456)
+.+.++..- .+...|+.|.-. ...|++.-|...|-.-.... +....+|..+...+....+++.|...|....... |
T Consensus 806 ~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P 881 (1238)
T KOG1127|consen 806 CKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-P 881 (1238)
T ss_pred HHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-c
Confidence 666665422 255666665544 55566666666665555432 2355677777777778888888888888877653 4
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC--------ChhhHHHHHHHHHccCChhHHHHHHHH----------HHH
Q 012804 355 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--------DSFTYSSMVHNLCKAKRLPSASKLLLS----------CLK 416 (456)
Q Consensus 355 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~----------~~~ 416 (456)
.+...|..........|+.-++..+|..-... ....|..........|+.++-+...++ ...
T Consensus 882 ~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~ 961 (1238)
T KOG1127|consen 882 LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL 961 (1238)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh
Confidence 45555555555555667777777776642111 222333333333445554443332222 222
Q ss_pred cCCCCCHHhHHHHHHHHHccCChHHHHHHHHH
Q 012804 417 SGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 448 (456)
Q Consensus 417 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 448 (456)
. .+.+...|...+....+.+.+.+|.....+
T Consensus 962 ~-~p~~~fAy~~~gstlEhL~ey~~a~ela~R 992 (1238)
T KOG1127|consen 962 G-HPQLCFAYAANGSTLEHLEEYRAALELATR 992 (1238)
T ss_pred c-CcchhHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 2 222445566666666666666666555544
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=1.1e-08 Score=89.02 Aligned_cols=250 Identities=11% Similarity=0.027 Sum_probs=189.6
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChH
Q 012804 190 KGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 269 (456)
Q Consensus 190 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (456)
.-+.+.|++.+|.-.|+...+..+. +...|..|.......++-..|+..+.+..+.+ +-+......|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 3457888899999999988876554 77888888888888899999999999999886 667788888888899999889
Q ss_pred HHHHHHHHHHHCCCccCHHHHHHHH---------HHHHhcCCHHHHHHHHHHHH-HcCCCcCHHhHHHHHHHHHhcCCHH
Q 012804 270 EATDYMEQMVTDGVQLDIVSYNTLI---------NLYCKEGKLEAAYLLLDEME-KQGFECDKYTHTILIDGLCKAGNIK 339 (456)
Q Consensus 270 ~a~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~ 339 (456)
.|.+.++.-+...++- .|.... ..+..........++|-++. ..+..+|+.+...|.-.|--.|+++
T Consensus 371 ~Al~~L~~Wi~~~p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHhCccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999998887653210 000000 01111122334445555544 4444578888888888899999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 012804 340 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLK 416 (456)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 416 (456)
+|...|+.++... |.|...|+.|...+....+.++|+..|+++.+. -+.++..|+-.|...|.+++|.+.|-.++.
T Consensus 448 raiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 448 RAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999999874 667889999999999999999999999999877 566788899999999999999999888764
Q ss_pred cC---------CCCCHHhHHHHHHHHHccCChHHHHHH
Q 012804 417 SG---------VRILKSAQKAVVDGLRHSGCRREAKKI 445 (456)
Q Consensus 417 ~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~ 445 (456)
.. ..++..+|..|-.++...++.|.+..+
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 31 122346788887788888887755544
No 100
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=4.1e-06 Score=78.31 Aligned_cols=391 Identities=10% Similarity=0.031 Sum_probs=210.7
Q ss_pred CCCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCC--CCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCC--CCCCHh
Q 012804 3 GKLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGV--LPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAG--ISPDVV 78 (456)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~ 78 (456)
.+.|+..|+.++.-= +- -=.++.+..+..+. ..|+...+..+.++...+-..+-+++++++.-.+ +..+..
T Consensus 948 ~R~D~~LW~~VL~e~---n~--~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~n 1022 (1666)
T KOG0985|consen 948 ERSDPDLWAKVLNEE---NP--YRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRN 1022 (1666)
T ss_pred hccChHHHHHHHhcc---Ch--HHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchh
Confidence 456677777766211 11 11234444444332 1245555666777777777777777777765321 111222
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC----------------
Q 012804 79 TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGD---------------- 142 (456)
Q Consensus 79 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------- 142 (456)
.-+.|+-...+. +..+..++.+++-..+. |+ +...+...+-+++|..+|+..-..+
T Consensus 1023 LQnLLiLtAika-d~trVm~YI~rLdnyDa-~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA 1094 (1666)
T KOG0985|consen 1023 LQNLLILTAIKA-DRTRVMEYINRLDNYDA-PD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRA 1094 (1666)
T ss_pred hhhhHHHHHhhc-ChHHHHHHHHHhccCCc-hh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHH
Confidence 233444333333 22334444444433211 11 1222333333444444443321000
Q ss_pred -----CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH
Q 012804 143 -----LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA 217 (456)
Q Consensus 143 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 217 (456)
-...+..|..+..+-.+.|...+|++-|-+. .|+..|..++....+.|.|++-.+++...++....|..
T Consensus 1095 ~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i 1168 (1666)
T KOG0985|consen 1095 YEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI 1168 (1666)
T ss_pred HHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc
Confidence 0112356666666666666666666555322 14556666677777777777776666665554444333
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHH
Q 012804 218 ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 297 (456)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (456)
. +.++-+|++.++..+..+++. .|+......+..-|...+.++.|.-++.. ..-|..|...+
T Consensus 1169 d--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TL 1230 (1666)
T KOG0985|consen 1169 D--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTL 1230 (1666)
T ss_pred h--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHH
Confidence 3 345566666666555444321 45555566666666666666666655543 33466677777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 012804 298 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 377 (456)
Q Consensus 298 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 377 (456)
...|++..|...-+.. .+..||..+-.+|...+.+.-| +|-...+.....-...++..|...|-+++.+
T Consensus 1231 V~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElI 1299 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELI 1299 (1666)
T ss_pred HHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHH
Confidence 7777777776554333 2566787777777766655433 3333344556677788889999999999999
Q ss_pred HHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHc-CCC------CCHHhHHHHHHHHHccCChHHH
Q 012804 378 NVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS-GVR------ILKSAQKAVVDGLRHSGCRREA 442 (456)
Q Consensus 378 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~g~~~~A 442 (456)
.+++..... ....++.++-.|.+- ++++-.+.++-.... +++ .....|..++..|.+-..++.|
T Consensus 1300 sl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1300 SLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 999877655 444566666555543 455555555444322 221 0223455555555555555544
No 101
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.13 E-value=8.4e-09 Score=86.44 Aligned_cols=251 Identities=16% Similarity=0.101 Sum_probs=145.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHH
Q 012804 120 HCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 199 (456)
Q Consensus 120 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 199 (456)
+-+.-.|.+..++.-.+ ........+......+.+++...|+.+.++ .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44555677777776555 332221233444556667788888766543 3333332 455555555544444334555
Q ss_pred HHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 012804 200 TARWILKELGDSGHAP-NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM 278 (456)
Q Consensus 200 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 278 (456)
.+..-++........+ +..........+...|+++.|++++... .+.......+.++.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555444333332 2222233334556678888887766532 34555666777888888888888888888
Q ss_pred HHCCCccCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 012804 279 VTDGVQLDIVSYNTLINLYCK----EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 354 (456)
Q Consensus 279 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 354 (456)
.+. ..| .+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|..++.+....+ +
T Consensus 158 ~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred Hhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 764 223 333334444433 23578888888887654 45677777888888888888888888888877654 4
Q ss_pred CCHHHHHHHHHHHHhCCCH-HHHHHHHHHhccC
Q 012804 355 SNLEAYNCIVDRLGKDGKI-DHAINVFESMEVK 386 (456)
Q Consensus 355 ~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 386 (456)
.++.++..++.+....|+. +.+.+.+.++...
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 5567777777777777777 5566677766654
No 102
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=8.3e-06 Score=76.40 Aligned_cols=311 Identities=15% Similarity=0.127 Sum_probs=162.2
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHH-H---HHHH------HHHhC---------
Q 012804 11 NICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAG-Y---TILN------RMREA--------- 71 (456)
Q Consensus 11 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~---~~~~------~~~~~--------- 71 (456)
..|+.-.-++++..--+.+++..+..|.. ++.++|++...|...++-.+- + ..|+ -..++
T Consensus 842 deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaY 920 (1666)
T KOG0985|consen 842 DELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAY 920 (1666)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEee
Confidence 34555666778888888888888888865 888999999888776543321 1 0111 11111
Q ss_pred --C--------CCCCHhHHHHHHHHHHcCCChhHH-----------HHHHHHHHHCCCC--CCHHhHHHHHHHHHhcCCh
Q 012804 72 --G--------ISPDVVTYNSLIAGATRNSLLSCS-----------LDLLDEMLEMGIP--PDVWSYNSLMHCLFQLGKP 128 (456)
Q Consensus 72 --~--------~~~~~~~~~~l~~~~~~~~~~~~a-----------~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 128 (456)
| +......|....+.+.+..+.+-- .+++++..+.+++ .|+.....-+.++...+-+
T Consensus 921 erGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp 1000 (1666)
T KOG0985|consen 921 ERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLP 1000 (1666)
T ss_pred cccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCc
Confidence 1 001122344444555555443322 2445555554432 3555566677888888889
Q ss_pred hHHHHHHHHHHhCCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 012804 129 DEANRVFQDMICGDLT--PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 206 (456)
Q Consensus 129 ~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 206 (456)
.+-+++++++.-.+.. .+...-|.++-...+ -+..+..++.+++..-.. |+ +.......+-+++|..+|+
T Consensus 1001 ~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~------ia~iai~~~LyEEAF~ifk 1072 (1666)
T KOG0985|consen 1001 NELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD------IAEIAIENQLYEEAFAIFK 1072 (1666)
T ss_pred HHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh------HHHHHhhhhHHHHHHHHHH
Confidence 9999999887643211 112222333333332 344555555555544321 12 1222333444455555544
Q ss_pred HHhhCC---------------------CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc
Q 012804 207 ELGDSG---------------------HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 265 (456)
Q Consensus 207 ~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (456)
.....+ .-..+..|+.+..+-.+.+...+|++.|-+ ..|+..|..+++...+.
T Consensus 1073 kf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~ 1146 (1666)
T KOG0985|consen 1073 KFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRT 1146 (1666)
T ss_pred HhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhc
Confidence 321100 011344566666666666666655554432 23455666666666666
Q ss_pred CChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHH
Q 012804 266 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 345 (456)
Q Consensus 266 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 345 (456)
|.+++-.+++....+....|... +.|+-+|++.++..+..+++ ..|+......+..-|...+.++.|.-++
T Consensus 1147 ~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1147 GKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred CcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 66666666666665554444333 44666666666655544333 1244444444555555555555444443
No 103
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.11 E-value=7.8e-08 Score=86.24 Aligned_cols=220 Identities=14% Similarity=0.042 Sum_probs=176.2
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHH
Q 012804 178 FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 257 (456)
Q Consensus 178 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 257 (456)
++|-...-..+...+.+.|-...|..+++++. .|..++.+|...|+..+|..+..+..++ +|++..|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 34444455667788889999999999998754 3667888999999999999999888884 889999988
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCC
Q 012804 258 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 337 (456)
Q Consensus 258 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 337 (456)
+........-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|..+..+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 888777777778888887765432 22222333345789999999999887753 2366788888888889999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHH
Q 012804 338 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSC 414 (456)
Q Consensus 338 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 414 (456)
++.|.+.|....... +.+...|+.+..+|.+.|+..+|...+.++.+. +...|...+....+.|.+++|++.+.++
T Consensus 535 ~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred hHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 999999999988763 666899999999999999999999999998876 5667777888889999999999999998
Q ss_pred HHc
Q 012804 415 LKS 417 (456)
Q Consensus 415 ~~~ 417 (456)
.+.
T Consensus 614 l~~ 616 (777)
T KOG1128|consen 614 LDL 616 (777)
T ss_pred HHh
Confidence 754
No 104
>PLN02789 farnesyltranstransferase
Probab=99.10 E-value=3.7e-07 Score=77.70 Aligned_cols=201 Identities=12% Similarity=0.032 Sum_probs=88.6
Q ss_pred cCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCH--HHH
Q 012804 230 NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG-RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL--EAA 306 (456)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a 306 (456)
.+..++|+.+..++++.. +.+..++..-..++...| ++++++..++++...+.. +..+|+.....+.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHH
Confidence 334444555555544443 333333333333333444 345555555555544332 333444333333333332 344
Q ss_pred HHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC---CCH----HHHHHH
Q 012804 307 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD---GKI----DHAINV 379 (456)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~a~~~ 379 (456)
+.+++.+.+.+.. +..+|.....++...|++++++..+.++++.+ +.|...|+.....+.+. |.. +++.+.
T Consensus 128 l~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 5555555444322 44455555555555555555555555555543 33344444444433332 111 234444
Q ss_pred HHHhccC---ChhhHHHHHHHHHcc----CChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 012804 380 FESMEVK---DSFTYSSMVHNLCKA----KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 435 (456)
Q Consensus 380 ~~~~~~~---~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 435 (456)
..+++.. +...|+.+...+... ++..+|.+.+.+..+.++. ++..+..+++.|..
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 4333332 445555555555442 2334455555555443322 44455555555543
No 105
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.08 E-value=2.2e-06 Score=79.99 Aligned_cols=424 Identities=12% Similarity=-0.009 Sum_probs=248.7
Q ss_pred hCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHH
Q 012804 20 ANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDL 99 (456)
Q Consensus 20 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 99 (456)
+.+...|+..|-+..+.++. -...|..|...|+...+...|...|+...+.+ ..+..........|++..+++.|..+
T Consensus 471 rK~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence 34578888888888877643 34578999999998889999999999998764 33566788889999999999999998
Q ss_pred HHHHHHCCC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 012804 100 LDEMLEMGI-PPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF 178 (456)
Q Consensus 100 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 178 (456)
.-..-+... ..-...|....-.|...++...++.-|+...... |.|...|..+..+|...|++..|+++|.+....
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 433333211 0111223334455778899999999999998877 788999999999999999999999999998775
Q ss_pred CCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHhcCch-------hHHHHHHHHHH
Q 012804 179 VPEL-VTYNILIKGLCKAGRLRTARWILKELGDS------GHAPNAITYTTIMKCCFRNRKY-------KLGLEILSAMK 244 (456)
Q Consensus 179 ~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~-------~~a~~~~~~~~ 244 (456)
.|+. ..-......-+..|.+.++...+...... +..--..++..+...+...|-. +.+++.|.-..
T Consensus 626 rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 626 RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3332 22222334457789999999888776431 1111122222222222222222 22333333222
Q ss_pred HcCCCcChhhHHHHHHHHHHcCChH------HHHHHH-HHHHHCC--------------------CccCHHHHHHHHHHH
Q 012804 245 RKGYTFDGFGYCTVIAAFVKIGRLK------EATDYM-EQMVTDG--------------------VQLDIVSYNTLINLY 297 (456)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~-~~~~~~~--------------------~~~~~~~~~~l~~~~ 297 (456)
......+...|..+..+|.-.-..+ ....++ .+....+ ...++.+|..++..|
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINY 785 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHH
Confidence 2221122222222221111000000 000000 0011111 111233344444433
Q ss_pred Hh----cC----CHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012804 298 CK----EG----KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 369 (456)
Q Consensus 298 ~~----~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 369 (456)
.+ .| +...|...++..++.. ..+..+|+.|.-. ...|++.-+...|-+..... +....+|..+...+..
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEe
Confidence 33 11 2234556666555532 1244455555443 55567766666666655442 5556677777777788
Q ss_pred CCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHH----HcCCCCCHHhHHHHHHHHHccCChHHH
Q 012804 370 DGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCL----KSGVRILKSAQKAVVDGLRHSGCRREA 442 (456)
Q Consensus 370 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A 442 (456)
..+++.|...|...... +...|..........|+.-++..+|.--- ..|-.|+..-|..........|+.++-
T Consensus 863 n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~ 942 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEES 942 (1238)
T ss_pred cccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHH
Confidence 88888888888877766 44555555555556777777777776521 224455556666666666677776665
Q ss_pred HHHHHHHHh
Q 012804 443 KKIQSKIRM 451 (456)
Q Consensus 443 ~~~~~~~~~ 451 (456)
....+++..
T Consensus 943 I~t~~ki~s 951 (1238)
T KOG1127|consen 943 INTARKISS 951 (1238)
T ss_pred HHHhhhhhh
Confidence 555555433
No 106
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.08 E-value=6.4e-06 Score=71.77 Aligned_cols=410 Identities=12% Similarity=0.069 Sum_probs=225.5
Q ss_pred CCCCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHH
Q 012804 2 FGKLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYN 81 (456)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 81 (456)
..|-|..+|+.||+-+..+ .++++.+.+++++..- +-+...|..-+..-...++++....+|.+.... ..+...|.
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~ 90 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWK 90 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHH
Confidence 3678999999999988777 9999999999998653 336678999999999999999999999988765 34677777
Q ss_pred HHHHHHHcC-CChh----HHHHHHHHHH-HCCCCCC-HHhHHHHHHH---------HHhcCChhHHHHHHHHHHhCCCCC
Q 012804 82 SLIAGATRN-SLLS----CSLDLLDEML-EMGIPPD-VWSYNSLMHC---------LFQLGKPDEANRVFQDMICGDLTP 145 (456)
Q Consensus 82 ~l~~~~~~~-~~~~----~a~~~~~~~~-~~~~~~~-~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~~ 145 (456)
..+..-.+. ++.. ...+.|+-.. +.|..+- -..|+..+.. +....+++...++|+++....+..
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 777654432 2222 2233444333 3343322 2234443332 344456777888888887643222
Q ss_pred ChhHHHH------HHHHH-------HhcCChHHHHHHHHHHHhC--CCC-------Cc--------HHHHHHHHHHHHHc
Q 012804 146 CTATFNI------MLNGL-------CKNRYTDNALRMFRGLQKH--GFV-------PE--------LVTYNILIKGLCKA 195 (456)
Q Consensus 146 ~~~~~~~------l~~~~-------~~~~~~~~a~~~~~~~~~~--~~~-------~~--------~~~~~~l~~~~~~~ 195 (456)
-...|+- =++.. -+...+..|.++++++... |+. |. ...|-.+|.--..+
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 1222221 11111 1233456677777666432 221 11 01122222211111
Q ss_pred CC--------HHHHHHHHHHHh-hCCCCCCHHHHH-H----HHHHHHhcCc-------hhHHHHHHHHHHHcCCCcChhh
Q 012804 196 GR--------LRTARWILKELG-DSGHAPNAITYT-T----IMKCCFRNRK-------YKLGLEILSAMKRKGYTFDGFG 254 (456)
Q Consensus 196 ~~--------~~~a~~~~~~~~-~~~~~~~~~~~~-~----l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~ 254 (456)
+- -....-.+++.. -.+..|+..... . .-+.+...|+ .+++..++++....-...+...
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 011111222211 122222211100 0 0111222232 3444455554443322222222
Q ss_pred HHHHHHHHHHc---CChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHhHHHHHH
Q 012804 255 YCTVIAAFVKI---GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC-DKYTHTILID 330 (456)
Q Consensus 255 ~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 330 (456)
|..+...--.. ...+.....+++++..-..--..+|..+++.-.+......|..+|.++.+.+..+ +..+..+++.
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 22222111111 1244455555555544222223456666777777777788888888887766555 5556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC------ChhhHHHHHHHHHccCCh
Q 012804 331 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK------DSFTYSSMVHNLCKAKRL 404 (456)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~ 404 (456)
.++ .++.+-|.++|+.-++. +..++.-....++.+...|+-..+..+|+++... ....|..++.--..-|+.
T Consensus 411 y~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 411 YYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 554 46777888888875544 3444555566677777788888888888877665 346777887777778888
Q ss_pred hHHHHHHHHHHHc
Q 012804 405 PSASKLLLSCLKS 417 (456)
Q Consensus 405 ~~A~~~~~~~~~~ 417 (456)
..+.++-+++...
T Consensus 489 ~si~~lekR~~~a 501 (656)
T KOG1914|consen 489 NSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHHHh
Confidence 8777777766543
No 107
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.07 E-value=1.1e-06 Score=79.20 Aligned_cols=193 Identities=19% Similarity=0.232 Sum_probs=113.9
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCC
Q 012804 223 IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 302 (456)
Q Consensus 223 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 302 (456)
.+.+......+.+|+.+++.+.... .-..-|..+...|...|+++.|+++|.+. ..++..|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence 3455556677777777777776553 22334566677777788888887777543 234556777788888
Q ss_pred HHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 012804 303 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 382 (456)
Q Consensus 303 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 382 (456)
|..|.++-.+.. |.+.....|..-..-+-..|++.+|.+++-.+ | .|+ ..+.+|-+.|..++.+++..+
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 888777765553 22334445555555566677777776665332 2 233 234566777777777776665
Q ss_pred hccC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHH
Q 012804 383 MEVK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQ 446 (456)
Q Consensus 383 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 446 (456)
.... -..+...+..-|-..|+...|...|-++- -|.+.+..|..++.|++|.++.
T Consensus 876 ~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 876 HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 5443 33455555666666666666666554442 1233444455555555555443
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=1.6e-07 Score=82.08 Aligned_cols=88 Identities=17% Similarity=0.142 Sum_probs=57.5
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHH
Q 012804 121 CLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 200 (456)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 200 (456)
.+.+.|++.+|.-.|+..++.+ |-+...|..|.......++-..|+..+++..+.. +-+....-.|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 3556677777777777766665 5566677777777777777777777777776652 2355566666666667776666
Q ss_pred HHHHHHHHhh
Q 012804 201 ARWILKELGD 210 (456)
Q Consensus 201 a~~~~~~~~~ 210 (456)
|+..++....
T Consensus 372 Al~~L~~Wi~ 381 (579)
T KOG1125|consen 372 ALKMLDKWIR 381 (579)
T ss_pred HHHHHHHHHH
Confidence 7766666544
No 109
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.02 E-value=3.3e-06 Score=76.39 Aligned_cols=107 Identities=10% Similarity=0.106 Sum_probs=46.6
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhH
Q 012804 156 GLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL 235 (456)
Q Consensus 156 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 235 (456)
+......|.+|+.+++.+..... -...|..+...|...|+++.|.++|.+. ..++-.|.+|.+.|+++.
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 33344455555555555544321 2223444445555555555555555322 112334445555555555
Q ss_pred HHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHH
Q 012804 236 GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYM 275 (456)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 275 (456)
|.++-.+.... ......|-.-..-+-..|++.+|++++
T Consensus 810 a~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 810 AFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 55544433311 222223333333344444444444443
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.01 E-value=1.3e-07 Score=84.83 Aligned_cols=220 Identities=15% Similarity=0.076 Sum_probs=177.8
Q ss_pred CCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHH
Q 012804 214 APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 293 (456)
Q Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 293 (456)
+|-...-..+...+...|-...|..+++++. .+..++.+|...|+..+|..+..+..+ -+|++..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 3444445566777888888999999888765 455678899999999999999988887 36788888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH
Q 012804 294 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 373 (456)
Q Consensus 294 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 373 (456)
.......--+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.. +.-..+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 88777777788888888765432 12222222345789999999999988764 55678999999999999999
Q ss_pred HHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 012804 374 DHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 450 (456)
Q Consensus 374 ~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 450 (456)
+.|.+.|...... +...|+++..+|.+.++..+|...++++.+-+ ..+...|........+.|.+++|.+.+.++.
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 9999999988766 77899999999999999999999999999887 4477788888888899999999999999987
Q ss_pred hcc
Q 012804 451 MAK 453 (456)
Q Consensus 451 ~~~ 453 (456)
..+
T Consensus 615 ~~~ 617 (777)
T KOG1128|consen 615 DLR 617 (777)
T ss_pred Hhh
Confidence 654
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.00 E-value=1.4e-07 Score=74.63 Aligned_cols=146 Identities=10% Similarity=0.099 Sum_probs=109.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCH
Q 012804 259 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 338 (456)
Q Consensus 259 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 338 (456)
+..|...|++..+....+.+.. |. ..+...++.+++...++...+.+ +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 4457788888876544432211 11 01223667778888888777764 34778888888899999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhCCC--HHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHH
Q 012804 339 KGARLHLEYMNKIGFDSNLEAYNCIVDRL-GKDGK--IDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLL 412 (456)
Q Consensus 339 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~ 412 (456)
++|...++++.+.. +.+...+..+..++ ...|+ .++|.++++++... ++.++..++..+.+.|++++|+..|+
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999988874 56778888888764 67676 48999999988776 67788888888999999999999999
Q ss_pred HHHHcC
Q 012804 413 SCLKSG 418 (456)
Q Consensus 413 ~~~~~~ 418 (456)
++++..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 998774
No 112
>PLN02789 farnesyltranstransferase
Probab=98.99 E-value=2.7e-06 Score=72.51 Aligned_cols=204 Identities=11% Similarity=0.045 Sum_probs=93.0
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCh--HHH
Q 012804 90 NSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLG-KPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYT--DNA 166 (456)
Q Consensus 90 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a 166 (456)
.++.++|+.+..++++..+. +..+|+....++...| ++++++..++++...+ +.+..+|+.....+.+.|.. +++
T Consensus 50 ~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHH
Confidence 34444555555555443221 2233333333334444 3455555555555443 33344444443333333331 344
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---Cc----hhHHHHH
Q 012804 167 LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRN---RK----YKLGLEI 239 (456)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~----~~~a~~~ 239 (456)
+.+++++.+.. +-+..+|+....++...|+++++++.+.++.+.++. +...|+.....+.+. +. .+.....
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 55555554442 224455555555555555555555555555554333 333333333222222 11 2344555
Q ss_pred HHHHHHcCCCcChhhHHHHHHHHHHc----CChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh
Q 012804 240 LSAMKRKGYTFDGFGYCTVIAAFVKI----GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 299 (456)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 299 (456)
...++... |-+...|+.+...+... +...+|...+.+....++. +......|+..|+.
T Consensus 206 ~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 206 TIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 54555443 44555555555555442 2334466666655544322 45555666666654
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.98 E-value=2.9e-07 Score=72.59 Aligned_cols=156 Identities=12% Similarity=0.065 Sum_probs=104.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhc
Q 012804 256 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 335 (456)
Q Consensus 256 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 335 (456)
..+-..+...|+-+....+........ +.+.......+....+.|++..|...+.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 445556666676666666666654432 2355555666777777777777777777776643 45677777777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHH
Q 012804 336 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLL 412 (456)
Q Consensus 336 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~ 412 (456)
|+++.|..-|.+..+.. +-+...++.+...+.-.|+.+.|..++...... +..+-..+..+....|++++|.++..
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777777777777652 445566677777777777777777777766544 66666677777777777777777655
Q ss_pred HH
Q 012804 413 SC 414 (456)
Q Consensus 413 ~~ 414 (456)
+-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 44
No 114
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.93 E-value=1.3e-06 Score=84.19 Aligned_cols=222 Identities=15% Similarity=0.092 Sum_probs=174.0
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHHc-CCCcC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHH
Q 012804 216 NAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYTFD---GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN 291 (456)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 291 (456)
+...|-..|......++.++|.++.++++.. ++... ...|.++++.-..-|.-+...++|+++.+.. -....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 5667888888888999999999999998865 22222 2356666666667788888999999998752 2356788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHh
Q 012804 292 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS--NLEAYNCIVDRLGK 369 (456)
Q Consensus 292 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 369 (456)
.|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.++++. .+. ........+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS-LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cchhhhHHHHHHHHHHHhh
Confidence 8999999999999999999999875 3346778999999999999999999999998875 222 45666777778889
Q ss_pred CCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH--HhHHHHHHHHHccCChHH
Q 012804 370 DGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK--SAQKAVVDGLRHSGCRRE 441 (456)
Q Consensus 370 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~ 441 (456)
.|+.+.++.+|+..... ....|+.+++.-.+.|+.+.+..+|++++..++.|.. ..|...+..--..|+-..
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 99999999999987665 5678999999999999999999999999998877654 345555555555666433
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.92 E-value=3.1e-07 Score=75.97 Aligned_cols=190 Identities=11% Similarity=-0.031 Sum_probs=131.4
Q ss_pred CcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCc-c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH--Hh
Q 012804 249 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ-L-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK--YT 324 (456)
Q Consensus 249 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 324 (456)
......+......+...|+++.|...++++....+. | ....+..+..++...|++++|...++.+.+....... .+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 344556677778888999999999999998876332 1 1246677888999999999999999999875322111 24
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccCChhhHHHHHH
Q 012804 325 HTILIDGLCKA--------GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVH 396 (456)
Q Consensus 325 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~ 396 (456)
+..+..++... |++++|...++.+.+.. +.+...+..+..... .... .......+..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~~----------~~~~~~~~a~ 174 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRNR----------LAGKELYVAR 174 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHHH----------HHHHHHHHHH
Confidence 55555556554 67888999999988762 333333322221111 0000 0111235667
Q ss_pred HHHccCChhHHHHHHHHHHHcCC--CCCHHhHHHHHHHHHccCChHHHHHHHHHHHhcc
Q 012804 397 NLCKAKRLPSASKLLLSCLKSGV--RILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 453 (456)
Q Consensus 397 ~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 453 (456)
.+.+.|++.+|+..++++++..+ +.....+..++.++.+.|++++|..+++.+....
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 78999999999999999987733 1235788899999999999999999999887654
No 116
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.92 E-value=1.9e-06 Score=83.18 Aligned_cols=244 Identities=8% Similarity=0.021 Sum_probs=165.5
Q ss_pred HHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhC-CCC---CCHhHHHHHHHHHHcCCChhHHHHHHHHHH
Q 012804 29 IIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREA-GIS---PDVVTYNSLIAGATRNSLLSCSLDLLDEML 104 (456)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 104 (456)
=|++.+...|. +...|-..|......++.++|+++++++... ++. --...|.++++.-...|.-+...++|+++.
T Consensus 1446 DferlvrssPN-SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1446 DFERLVRSSPN-SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHHhcCCC-cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 35555555432 5557777777778888888888888877653 111 112356666666666777777788888887
Q ss_pred HCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--cH
Q 012804 105 EMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVP--EL 182 (456)
Q Consensus 105 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~ 182 (456)
+.. -.-..|..|...|.+.+.+++|.++++.|.+.- ......|...+..+.+.++-++|..++.+..+. ++- -.
T Consensus 1525 qyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lPk~eHv 1600 (1710)
T KOG1070|consen 1525 QYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS-LPKQEHV 1600 (1710)
T ss_pred Hhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cchhhhH
Confidence 752 123456778888888888888888888887652 245677888888888888888888888877765 221 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcC--hhhHHHHHH
Q 012804 183 VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD--GFGYCTVIA 260 (456)
Q Consensus 183 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 260 (456)
......+..-.+.|+.+.+..+|+......++ ....|+..++.-.+.++.+.+..+|+++...++++. ...|...+.
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 33444455566788888888888887765433 667788888888888888888888888888776654 345666666
Q ss_pred HHHHcCChHHHHHHHHHH
Q 012804 261 AFVKIGRLKEATDYMEQM 278 (456)
Q Consensus 261 ~~~~~~~~~~a~~~~~~~ 278 (456)
.--..|+-+.++.+=.++
T Consensus 1680 yEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1680 YEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred HHHhcCchhhHHHHHHHH
Confidence 655666655544443333
No 117
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.91 E-value=3.5e-06 Score=80.26 Aligned_cols=242 Identities=10% Similarity=0.089 Sum_probs=145.6
Q ss_pred CCCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHH
Q 012804 3 GKLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNS 82 (456)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (456)
+|.+...+..|+..+...|++++|.++.+...+..+. ....|-.+...+.+.++.+.+..+ .
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 5677888888898888899999999998877776433 333444444466666665555444 2
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCC
Q 012804 83 LIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRY 162 (456)
Q Consensus 83 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 162 (456)
++.......++.-...+...|...+ -+...+..+..+|-+.|+.+++..+++++++.+ +.++.+.|.+...|... +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 3333334444433444444444432 344577788888888888899999998888887 77788888888888888 8
Q ss_pred hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Q 012804 163 TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA 242 (456)
Q Consensus 163 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 242 (456)
+++|.+++.+.... +...+++..+..++..+....+. +...+..+.+.....-
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~----------- 217 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHR----------- 217 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhh-----------
Confidence 88888888777654 55556677777777666654322 2222222221111110
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHH
Q 012804 243 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 298 (456)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 298 (456)
+...-..++..+-..|-..++++++..+++.+++.... |......++.+|.
T Consensus 218 ----~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 ----EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ----ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 11111223333444555555666666666666655332 4444445555444
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.90 E-value=6e-07 Score=74.31 Aligned_cols=190 Identities=9% Similarity=-0.056 Sum_probs=110.5
Q ss_pred CCCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCC--CHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCH--h
Q 012804 3 GKLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLP--DVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDV--V 78 (456)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 78 (456)
.+..+..+-.+...+...|++++|...|+++....+.. ...++..+..++...|++++|...++.+.+....... .
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 34455666666777777777777777777776654321 1135566667777777777777777777654311111 1
Q ss_pred HHHHHHHHHHcC--------CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHH
Q 012804 79 TYNSLIAGATRN--------SLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATF 150 (456)
Q Consensus 79 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 150 (456)
++..+..++... |+.+.|.+.++.+....+. +...+..+..... .. ... ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~------~~~--------~~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LR------NRL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HH------HHH--------HHHH
Confidence 333333444333 5566677777776664322 2212211111100 00 000 0011
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 012804 151 NIMLNGLCKNRYTDNALRMFRGLQKHGF--VPELVTYNILIKGLCKAGRLRTARWILKELGDS 211 (456)
Q Consensus 151 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 211 (456)
..+...+.+.|++++|+..++...+... +.....+..+..++...|++++|...++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2455678888999999988888876521 223567778888888999999998888877654
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.89 E-value=3.4e-07 Score=72.20 Aligned_cols=165 Identities=18% Similarity=0.091 Sum_probs=132.4
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 012804 41 DVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMH 120 (456)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 120 (456)
|... ...-..+...|+-+....+....... .+-|.......+....+.|++..|+..+.+..... ++|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 4444 55667777788888888887775543 23455566668888999999999999999988754 558899999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHH
Q 012804 121 CLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 200 (456)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 200 (456)
+|.+.|+++.|..-|.+..+.. +-+....+.+...+.-.|+.+.|..++......+ ..+...-..+.......|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHH
Confidence 9999999999999999988765 4566788889989999999999999999888763 3367777888888899999999
Q ss_pred HHHHHHHHhh
Q 012804 201 ARWILKELGD 210 (456)
Q Consensus 201 a~~~~~~~~~ 210 (456)
|.++...-..
T Consensus 221 A~~i~~~e~~ 230 (257)
T COG5010 221 AEDIAVQELL 230 (257)
T ss_pred HHhhcccccc
Confidence 9988776544
No 120
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.85 E-value=3.8e-07 Score=68.28 Aligned_cols=104 Identities=10% Similarity=-0.079 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHcc
Q 012804 325 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKA 401 (456)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~ 401 (456)
+..+...+...|++++|...|+.+.... +.+...+..+..++...|++++|...|+++... ++..+..++.++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 3344555566666666666666666553 445666666666666666666666666666554 555666666666777
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHhHHHHH
Q 012804 402 KRLPSASKLLLSCLKSGVRILKSAQKAVV 430 (456)
Q Consensus 402 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 430 (456)
|++++|+..|+++++..+. ++..+....
T Consensus 106 g~~~eAi~~~~~Al~~~p~-~~~~~~~~~ 133 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYA-DASWSEIRQ 133 (144)
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHH
Confidence 7777777777777655322 444443333
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.85 E-value=5.5e-06 Score=78.93 Aligned_cols=235 Identities=8% Similarity=0.035 Sum_probs=127.5
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 012804 111 DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIK 190 (456)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 190 (456)
+...+..|+..+...+++++|.++.+...+.. +-....|..+...+...++.+++.-+ .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 44556666666666777777777766555442 22233333333344444443333333 2222
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHH
Q 012804 191 GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 270 (456)
Q Consensus 191 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (456)
......++..+..+...+... .-+...+..+..+|.+.|+.+++..+++++.+.+ +-++.+.+.+...|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 223333333333333333332 1233455666666667777777777777777665 55666666666666666 6666
Q ss_pred HHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012804 271 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 350 (456)
Q Consensus 271 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 350 (456)
|..++.+.+.. +...+++..+.++|..+....+. +...|..+. +.+..
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~----------------~ki~~ 215 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIE----------------RKVLG 215 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHH----------------HHHHh
Confidence 66666655432 44555666666666666654221 222222222 22222
Q ss_pred C-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHH
Q 012804 351 I-GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLC 399 (456)
Q Consensus 351 ~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~ 399 (456)
. +..--..++..+...|...++++++..+++.+... |..+...++..|.
T Consensus 216 ~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 216 HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 1 22223455666667777788888888888877766 4555566666665
No 122
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.84 E-value=5.9e-05 Score=66.06 Aligned_cols=411 Identities=12% Similarity=0.059 Sum_probs=244.5
Q ss_pred HhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHH
Q 012804 34 IRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVW 113 (456)
Q Consensus 34 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 113 (456)
++.++ -|+.+|+.|++-+... .++++.+.++++... .+-.+..|..-|..-...++++..+++|.+.+..- .+..
T Consensus 13 ie~nP-~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlD 87 (656)
T KOG1914|consen 13 IEENP-YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLD 87 (656)
T ss_pred HhcCC-ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHh
Confidence 34443 4899999999988766 999999999999875 34567889999999999999999999999987753 3555
Q ss_pred hHHHHHHHHHh-cCChh----HHHHHHHHHHh-CCCCC-ChhHHHHHHHH---------HHhcCChHHHHHHHHHHHhCC
Q 012804 114 SYNSLMHCLFQ-LGKPD----EANRVFQDMIC-GDLTP-CTATFNIMLNG---------LCKNRYTDNALRMFRGLQKHG 177 (456)
Q Consensus 114 ~~~~l~~~~~~-~~~~~----~a~~~~~~~~~-~~~~~-~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~ 177 (456)
.|...+.--.+ .|+.. ...+.|+-... .|+.+ +...|+..+.. +..+.+.+...+++.++...-
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 66666653322 23322 23333443332 23322 23345544433 333446667778888877542
Q ss_pred CCC------cHHHHHHHHHHH-------HHcCCHHHHHHHHHHHhh--CCCC------CCHHH---------HHHHHHHH
Q 012804 178 FVP------ELVTYNILIKGL-------CKAGRLRTARWILKELGD--SGHA------PNAIT---------YTTIMKCC 227 (456)
Q Consensus 178 ~~~------~~~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~--~~~~------~~~~~---------~~~l~~~~ 227 (456)
+.. |-..|..-|+.. -+...+..|.++++++.. .|.. |...| |..+|.-
T Consensus 168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w- 246 (656)
T KOG1914|consen 168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW- 246 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-
Confidence 211 111222212111 123346667777776643 2221 11111 2222221
Q ss_pred HhcCchh---------HHHHHHHHHHH-cCCCcChhhH-----HHHHHHHHHcCCh-------HHHHHHHHHHHHCCCcc
Q 012804 228 FRNRKYK---------LGLEILSAMKR-KGYTFDGFGY-----CTVIAAFVKIGRL-------KEATDYMEQMVTDGVQL 285 (456)
Q Consensus 228 ~~~~~~~---------~a~~~~~~~~~-~~~~~~~~~~-----~~l~~~~~~~~~~-------~~a~~~~~~~~~~~~~~ 285 (456)
.+.+... ...-.+++... .+..|+.... ....+.+...|+. +++..+++.....-..-
T Consensus 247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~ 326 (656)
T KOG1914|consen 247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE 326 (656)
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 1111110 11112222221 1222221110 0111223333443 44555555554432222
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHH
Q 012804 286 DIVSYNTLINLYCKEG---KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS-NLEAYN 361 (456)
Q Consensus 286 ~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 361 (456)
+..+|..+..---..- ..+.....++++......--.-+|..++..-.+..-++.|..+|.++.+.+..+ +..+..
T Consensus 327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence 3333333322111111 356666777777653222233468888888888888999999999999887666 566666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHcc
Q 012804 362 CIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL--KSAQKAVVDGLRHS 436 (456)
Q Consensus 362 ~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 436 (456)
+++.-+ -.++..-|.++|+.-... ++..-...+.-+...++-..|..+|++.+..++.|+ ..+|..++.--..-
T Consensus 407 A~mEy~-cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~v 485 (656)
T KOG1914|consen 407 ALMEYY-CSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNV 485 (656)
T ss_pred HHHHHH-hcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhc
Confidence 666644 578899999999987766 556666788888999999999999999998865555 47899999999999
Q ss_pred CChHHHHHHHHHHHh
Q 012804 437 GCRREAKKIQSKIRM 451 (456)
Q Consensus 437 g~~~~A~~~~~~~~~ 451 (456)
|+...++++-++.-.
T Consensus 486 GdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 486 GDLNSILKLEKRRFT 500 (656)
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999988777643
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.83 E-value=1.8e-06 Score=81.29 Aligned_cols=132 Identities=12% Similarity=0.106 Sum_probs=108.5
Q ss_pred CccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 012804 283 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 361 (456)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 361 (456)
.+.+...+..|.....+.|.+++|..+++...+. .| +......++..+.+.+++++|....++..... +.+.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHH
Confidence 3446788888888888899999999999888876 34 45567777888888899999999999888864 66677788
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 012804 362 CIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 417 (456)
Q Consensus 362 ~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 417 (456)
.+..++.+.|++++|..+|+++... +..++..+..++...|+.++|...|+++++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888999999999999988855 5678888888888899999999999988876
No 124
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.83 E-value=0.0001 Score=68.48 Aligned_cols=423 Identities=13% Similarity=0.046 Sum_probs=235.8
Q ss_pred HHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHH--HHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCCh
Q 012804 16 TFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDA--YCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLL 93 (456)
Q Consensus 16 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 93 (456)
.....+++.+|++....+.+..+ +. .|..++.+ +.+.|+.++|..+++.....+.. |..|...+-.+|...++.
T Consensus 18 d~ld~~qfkkal~~~~kllkk~P--n~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHP--NA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCC--Cc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 34567899999999999988753 33 23444444 46789999999888887766433 788899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC-C---------h
Q 012804 94 SCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNR-Y---------T 163 (456)
Q Consensus 94 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~ 163 (456)
+++..+|+...... |+......+..+|.+.+++.+-.+.--++-+. .+.....|=.++....... . .
T Consensus 94 d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 94 DEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 99999999998854 66777778888899888876544444333332 1333333333333333211 1 1
Q ss_pred HHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH-HhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHH
Q 012804 164 DNALRMFRGLQKHG-FVPELVTYNILIKGLCKAGRLRTARWILKE-LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 241 (456)
Q Consensus 164 ~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 241 (456)
.-|.+..+.+.+.+ .--+..-...-...+...|++++|.+++.. ..+.-...+...-+.-+..+...+++.+..++-.
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 23556666666553 111111122223345567889999998843 3333233344444556677778888888888888
Q ss_pred HHHHcCCCcChhhHHHHHHH----------------HHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHH
Q 012804 242 AMKRKGYTFDGFGYCTVIAA----------------FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 305 (456)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~----------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 305 (456)
++...+ +.| |...+.. +...+..+...+..++....+.+-..-..-.+..-+..-|+.++
T Consensus 251 ~Ll~k~-~Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee 326 (932)
T KOG2053|consen 251 RLLEKG-NDD---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEE 326 (932)
T ss_pred HHHHhC-Ccc---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHH
Confidence 888775 323 2221111 12223344444444444433222111111122222234466666
Q ss_pred HHHHHHHHHHc----------------------------CCCcCHH----h---HHHHHHHHHhcCC-----HHHHHHHH
Q 012804 306 AYLLLDEMEKQ----------------------------GFECDKY----T---HTILIDGLCKAGN-----IKGARLHL 345 (456)
Q Consensus 306 a~~~~~~~~~~----------------------------~~~~~~~----~---~~~l~~~~~~~~~-----~~~a~~~~ 345 (456)
+...|-+-... +..++.. . +...+..-.-.|. .+....++
T Consensus 327 ~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~ 406 (932)
T KOG2053|consen 327 MLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYV 406 (932)
T ss_pred HHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHH
Confidence 54443221100 0011111 0 1111111122232 12333333
Q ss_pred HHHH---hCC------CCCCH---------HHHHHHHHHHHhCCCHH---HHHHHHHHhccC---ChhhHHHHHHHHHcc
Q 012804 346 EYMN---KIG------FDSNL---------EAYNCIVDRLGKDGKID---HAINVFESMEVK---DSFTYSSMVHNLCKA 401 (456)
Q Consensus 346 ~~~~---~~~------~~~~~---------~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~---~~~~~~~l~~~~~~~ 401 (456)
++.. ..| .-|+. .+.+.+++.+.+.++.. +|+-+++..... |..+-..+++.|.-.
T Consensus 407 ~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~l 486 (932)
T KOG2053|consen 407 RKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYL 486 (932)
T ss_pred HHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHh
Confidence 3321 112 12221 13356667777777755 455566655544 444455677888888
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 012804 402 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 450 (456)
Q Consensus 402 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 450 (456)
|-+..|.++|+.+--+.++.|..-+. +...+...|++..+...++...
T Consensus 487 Ga~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~l 534 (932)
T KOG2053|consen 487 GAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHL 534 (932)
T ss_pred cCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHH
Confidence 88888888888885555665544443 4455666788888887776543
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=8.7e-06 Score=64.46 Aligned_cols=248 Identities=11% Similarity=0.022 Sum_probs=162.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCch
Q 012804 154 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 233 (456)
Q Consensus 154 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 233 (456)
++-+.-.|.+..++..-....... .+...-..+.++|...|.+.....-. ... -.|.......+.......++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI---~~~-~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEI---KEG-KATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccccc---ccc-cCChHHHHHHHHHHhhCcchh
Confidence 344555677877777666554432 23344444567777777765543322 222 234444555444444444444
Q ss_pred hHHH-HHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012804 234 KLGL-EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 312 (456)
Q Consensus 234 ~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 312 (456)
+... ++.+.+.......+......-...|+..|++++|.+...... +......=+..+.+..+++-|...++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333 344444444333343444444566888899999998887632 344444446667788889999999999
Q ss_pred HHHcCCCcCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC--
Q 012804 313 MEKQGFECDKYTHTILIDGLCK----AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 386 (456)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 386 (456)
|.+. .+..|.+.|..++.+ .+.+..|.-+|+++.++ .+|+..+.+....++...|++++|..+++++..+
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 9874 366788888877754 35678899999999875 5889999999999999999999999999988877
Q ss_pred -ChhhHHHHHHHHHccCChhHH-HHHHHHHHHc
Q 012804 387 -DSFTYSSMVHNLCKAKRLPSA-SKLLLSCLKS 417 (456)
Q Consensus 387 -~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~ 417 (456)
++.+...++.+-...|...++ .+.+.+....
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 777777777766677766554 4555555544
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=2.1e-05 Score=62.35 Aligned_cols=105 Identities=20% Similarity=0.234 Sum_probs=47.2
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCC
Q 012804 192 LCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR----NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 267 (456)
Q Consensus 192 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 267 (456)
+.+..+++-|...+++|.+. -+..+.+.|..++.+ .++...|.-+|+++-++- +|++.+.+....++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcC
Confidence 34444444455555544442 133334434333322 233445555555554432 4455555555555555555
Q ss_pred hHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcC
Q 012804 268 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 301 (456)
Q Consensus 268 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 301 (456)
+++|..+++..+..... ++.+...++.+-...|
T Consensus 223 ~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAK-DPETLANLIVLALHLG 255 (299)
T ss_pred HHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhC
Confidence 55555555555544332 3444433333333333
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.80 E-value=2.8e-07 Score=68.94 Aligned_cols=109 Identities=10% Similarity=-0.033 Sum_probs=92.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 012804 342 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 418 (456)
..++++.++. .|+ .+..+...+...|++++|...|+.+... +...|..++.++...|++++|+..|+++++.+
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4456666654 344 3556788899999999999999998776 77889999999999999999999999999876
Q ss_pred CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhcccC
Q 012804 419 VRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 455 (456)
Q Consensus 419 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 455 (456)
+ .++..+..++.++...|+.++|...|++..+..+.
T Consensus 89 p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 89 A-SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred C-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4 38899999999999999999999999999887654
No 128
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.79 E-value=3.3e-06 Score=66.95 Aligned_cols=119 Identities=10% Similarity=0.085 Sum_probs=69.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH-HHhcCC--hhHH
Q 012804 55 FVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHC-LFQLGK--PDEA 131 (456)
Q Consensus 55 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~~a 131 (456)
.++.+++...++...+.+ +.|...|..+...|...|++++|...+++..+.... +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 444455555555555443 345556666666666666666666666666665432 45555555554 345454 3666
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 012804 132 NRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH 176 (456)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 176 (456)
.+++++..+.+ +.+..++..+...+.+.|++++|+..++++.+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666554 445556666666666666666666666666554
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.76 E-value=7.7e-06 Score=77.09 Aligned_cols=160 Identities=11% Similarity=0.021 Sum_probs=129.8
Q ss_pred CCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHH
Q 012804 247 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 326 (456)
Q Consensus 247 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 326 (456)
.++.+...+..+.....+.|..++|..+++.+.+..+. +......++..+.+.+++++|+..+++....... +.....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHH
Confidence 34677889999999999999999999999999997433 6677788899999999999999999999987433 667788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCC
Q 012804 327 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKR 403 (456)
Q Consensus 327 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 403 (456)
.+..++...|++++|..+|+++... .+.+..++..+..++...|+.++|...|+++... ....|+.++ ++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~ 231 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VD 231 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HH
Confidence 8889999999999999999999984 3566889999999999999999999999998776 223333322 33
Q ss_pred hhHHHHHHHHHH
Q 012804 404 LPSASKLLLSCL 415 (456)
Q Consensus 404 ~~~A~~~~~~~~ 415 (456)
...-..+++++-
T Consensus 232 ~~~~~~~~~~~~ 243 (694)
T PRK15179 232 LNADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHHcC
Confidence 444455666653
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=0.00011 Score=63.69 Aligned_cols=147 Identities=13% Similarity=0.060 Sum_probs=110.7
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHhHHHHHHHHHhcCCHH
Q 012804 261 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD-KYTHTILIDGLCKAGNIK 339 (456)
Q Consensus 261 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 339 (456)
.+...|+++.|+..++.++... +-|+..+......+...++.++|.+.++.+... .|+ ......+..++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 3456788888888888888763 346666777778888888888888888888876 344 455666778888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 012804 340 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 419 (456)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 419 (456)
+|+.+++..... .+.|+..|..|..+|...|+..++.... ...+...|++++|...+..+.+..
T Consensus 392 eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~--------------AE~~~~~G~~~~A~~~l~~A~~~~- 455 (484)
T COG4783 392 EAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLAR--------------AEGYALAGRLEQAIIFLMRASQQV- 455 (484)
T ss_pred HHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHH--------------HHHHHhCCCHHHHHHHHHHHHHhc-
Confidence 888888888776 3777888888888888888887776643 445677888888888888887662
Q ss_pred CCCHHhH
Q 012804 420 RILKSAQ 426 (456)
Q Consensus 420 ~~~~~~~ 426 (456)
+++..+|
T Consensus 456 ~~~~~~~ 462 (484)
T COG4783 456 KLGFPDW 462 (484)
T ss_pred cCCcHHH
Confidence 3344444
No 131
>PF12854 PPR_1: PPR repeat
Probab=98.72 E-value=2e-08 Score=53.28 Aligned_cols=31 Identities=45% Similarity=0.749 Sum_probs=13.7
Q ss_pred CCCCHhHHHHHHHHHHcCCChhHHHHHHHHH
Q 012804 73 ISPDVVTYNSLIAGATRNSLLSCSLDLLDEM 103 (456)
Q Consensus 73 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 103 (456)
+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=2e-05 Score=62.02 Aligned_cols=201 Identities=15% Similarity=0.080 Sum_probs=146.9
Q ss_pred hcCchhHHHHHHHHHHHc---C-CCcChh-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCH
Q 012804 229 RNRKYKLGLEILSAMKRK---G-YTFDGF-GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 303 (456)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 303 (456)
...+.++..+++..+... + ..++.. .+..++-+....|+.+.|...++.+... ++.+..+-..-...+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 456788888888888743 3 334433 4556666777889999999999998876 344555444444455668999
Q ss_pred HHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 012804 304 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 383 (456)
Q Consensus 304 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 383 (456)
++|.++++.+.+.+ +.|..++..-+...-..|+.-+|++-+....+. +..|.+.|..+...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999999875 346667776666667778888888888888776 6889999999999999999999999999987
Q ss_pred ccC---ChhhHHHHHHHHHccC---ChhHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 012804 384 EVK---DSFTYSSMVHNLCKAK---RLPSASKLLLSCLKSGVRILKSAQKAVVDGL 433 (456)
Q Consensus 384 ~~~---~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 433 (456)
.-. ++..+..+...+.-.| +..-|.++|.+.++..++ +...+..+.-++
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~-~~ral~GI~lc~ 235 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK-NLRALFGIYLCG 235 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH-hHHHHHHHHHHH
Confidence 655 5666667776665444 566788999999877432 444444443333
No 133
>PF12854 PPR_1: PPR repeat
Probab=98.67 E-value=4e-08 Score=52.12 Aligned_cols=32 Identities=41% Similarity=0.722 Sum_probs=18.7
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 012804 107 GIPPDVWSYNSLMHCLFQLGKPDEANRVFQDM 138 (456)
Q Consensus 107 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 138 (456)
|++||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555556666666666666666665555554
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=8e-05 Score=58.76 Aligned_cols=187 Identities=18% Similarity=0.173 Sum_probs=82.8
Q ss_pred CChHHHHHHHHHHHhC---C-CCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhH
Q 012804 161 RYTDNALRMFRGLQKH---G-FVPELV-TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL 235 (456)
Q Consensus 161 ~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 235 (456)
.+.++.++++..+... | ..++.. .|..++-+....|+.+.|...++++...- +-+...-..-...+...|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 3455555555554332 2 222322 23334444455555555555555544432 1122222211222333455555
Q ss_pred HHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012804 236 GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 315 (456)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 315 (456)
|+++++.+.+.+ |.|..++..-+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 555555555544 334444444444444445444555555444443 333555555555555555555555555555544
Q ss_pred cCCCcCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 012804 316 QGFECDKYTHTILIDGLCKAG---NIKGARLHLEYMNKI 351 (456)
Q Consensus 316 ~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~ 351 (456)
.. +.++..+..+...+...| +.+.+.+++.+.++.
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 31 113333334433332222 334445555554443
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.63 E-value=1.1e-06 Score=65.50 Aligned_cols=108 Identities=15% Similarity=0.045 Sum_probs=84.4
Q ss_pred HHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC--
Q 012804 309 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 386 (456)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 386 (456)
.++........ +......+...+...|++++|...++.+...+ +.+...+..+..++.+.|++++|...++++...
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45555554222 44556677777888899999999999888764 567788888888898999999999998887655
Q ss_pred -ChhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 012804 387 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 387 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 418 (456)
++..+..+...+...|++++|...+++.++..
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 56777888888889999999999999888764
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=3.3e-05 Score=66.85 Aligned_cols=123 Identities=15% Similarity=0.060 Sum_probs=99.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 012804 293 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 372 (456)
Q Consensus 293 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 372 (456)
....+...|++++|+..++.+...- +-|+.........+.+.++.++|.+.++.+.... +........+..++.+.|+
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCC
Confidence 3445567899999999999988762 2355555666788999999999999999999863 3336777888899999999
Q ss_pred HHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 012804 373 IDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 417 (456)
Q Consensus 373 ~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 417 (456)
+.+|+.+++..... ++..|..|..+|...|+..+|.....+....
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 99999999987765 8899999999999999998888776665433
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.56 E-value=4.3e-06 Score=62.35 Aligned_cols=110 Identities=16% Similarity=0.165 Sum_probs=64.7
Q ss_pred HHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 012804 29 IIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGI 108 (456)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 108 (456)
.++.+++..+. +......+...+...|++++|.+.|+.+...+ +.+...+..+..++...|++++|...++...+.+
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 34444444332 33445555566666666666666666665543 3355556666666666666666666666665543
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012804 109 PPDVWSYNSLMHCLFQLGKPDEANRVFQDMICG 141 (456)
Q Consensus 109 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 141 (456)
+.+...+..+..++...|++++|.+.|+...+.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 224555555666666666666666666666654
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.50 E-value=1.1e-05 Score=60.71 Aligned_cols=54 Identities=17% Similarity=0.033 Sum_probs=28.9
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHH
Q 012804 393 SMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 448 (456)
Q Consensus 393 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 448 (456)
.+...+...|++++|+..++.... ....+..+...+.++.+.|++++|+..|++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 445555556666666666544321 122334455555666666666666666554
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.49 E-value=1.7e-05 Score=59.71 Aligned_cols=115 Identities=13% Similarity=0.068 Sum_probs=54.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCc--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCCHHH
Q 012804 300 EGKLEAAYLLLDEMEKQGFEC--DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN--LEAYNCIVDRLGKDGKIDH 375 (456)
Q Consensus 300 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 375 (456)
.++...+...++.+....... .......+...+...|++++|...|+.+......|+ ......+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555555555432111 011222333445555555555555555555431111 1122334445555555555
Q ss_pred HHHHHHHhccC--ChhhHHHHHHHHHccCChhHHHHHHHHH
Q 012804 376 AINVFESMEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSC 414 (456)
Q Consensus 376 a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 414 (456)
|+..++..... .+..+...+.++...|++++|...|+++
T Consensus 104 Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 55555543332 3344445555556666666666655543
No 140
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.49 E-value=0.00092 Score=60.79 Aligned_cols=215 Identities=10% Similarity=0.018 Sum_probs=122.2
Q ss_pred cHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHH----------HHHHHcCC
Q 012804 22 RLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSL----------IAGATRNS 91 (456)
Q Consensus 22 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~~ 91 (456)
..++|.++.+ -.|.+..|..+.......-.++.|...|-+.... +.+.....| ...-.--|
T Consensus 678 gledA~qfiE------dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g 748 (1189)
T KOG2041|consen 678 GLEDAIQFIE------DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYG 748 (1189)
T ss_pred chHHHHHHHh------cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhc
Confidence 3455555444 2578888998888887777888887777665432 111111111 11122257
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 012804 92 LLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICG-DLTPCTATFNIMLNGLCKNRYTDNALRMF 170 (456)
Q Consensus 92 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 170 (456)
++++|++++-++-+++ ..+..+.+.|++-...++++.--.. +-..-...|+.+...+.....|++|.+.|
T Consensus 749 ~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 749 EFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred chhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887765542 3456677788887777766542111 00112356777777777777788887777
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCc
Q 012804 171 RGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF 250 (456)
Q Consensus 171 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 250 (456)
...... ...+.++.+..++++-..+...+. .+....-.+.+++.+.|.-++|.+.+-+.. .|
T Consensus 820 ~~~~~~---------e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p 881 (1189)
T KOG2041|consen 820 SYCGDT---------ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP 881 (1189)
T ss_pred Hhccch---------HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc
Confidence 654321 223455555555555544444332 244455556667777777666665543322 11
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHH
Q 012804 251 DGFGYCTVIAAFVKIGRLKEATDYMEQ 277 (456)
Q Consensus 251 ~~~~~~~l~~~~~~~~~~~~a~~~~~~ 277 (456)
...+..|...++|.+|.++-+.
T Consensus 882 -----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 882 -----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHh
Confidence 1234556666666666665543
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.43 E-value=0.0016 Score=61.04 Aligned_cols=424 Identities=15% Similarity=0.111 Sum_probs=241.2
Q ss_pred HHHHHHH--HHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 012804 10 LNICVCT--FCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGA 87 (456)
Q Consensus 10 ~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 87 (456)
|..++.+ +.+.|+.++|..+++.....+.. |..+...+-.+|...++.++|..+|++..+. -|+......+..+|
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmay 120 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAY 120 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHH
Confidence 3444444 46889999999999887765544 8889999999999999999999999999876 47777777888889
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHHhCC-CCCChhHHHHHHHH
Q 012804 88 TRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK----------PDEANRVFQDMICGD-LTPCTATFNIMLNG 156 (456)
Q Consensus 88 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~ 156 (456)
.+.+.+.+-.+.--++-+. .+-++..+-.+++.+...-. ..-|.+.++.+.+.+ --.+..-.......
T Consensus 121 vR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~i 199 (932)
T KOG2053|consen 121 VREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLI 199 (932)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHH
Confidence 9888876655544444442 33355556666666554321 234556666666543 11222223333455
Q ss_pred HHhcCChHHHHHHHH-HHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHH----HHHHHH----
Q 012804 157 LCKNRYTDNALRMFR-GLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT----TIMKCC---- 227 (456)
Q Consensus 157 ~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~---- 227 (456)
+...|.+++|.+++. ...+.-.+.+...-+.-+..+...+++.+..++-.++...+.. |..+|. .++..-
T Consensus 200 L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-dy~~~~~sv~klLe~~~~~~ 278 (932)
T KOG2053|consen 200 LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-DYKIYTDSVFKLLELLNKEP 278 (932)
T ss_pred HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-chHHHHHHHHHHHHhccccc
Confidence 667889999999984 4444433344555556677888889999998888888876544 211111 111110
Q ss_pred -----HhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHH---HcCChHHHHHHH------------------------
Q 012804 228 -----FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV---KIGRLKEATDYM------------------------ 275 (456)
Q Consensus 228 -----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~------------------------ 275 (456)
...+..+...+...+..... ....|-+-+.+.. ..|+.+++.-.|
T Consensus 279 a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~ 355 (932)
T KOG2053|consen 279 AEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNID 355 (932)
T ss_pred chhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHH
Confidence 11112222222222222221 1111222222222 234555443322
Q ss_pred ------HHHHHCCCccCHH----H---HHHHHHHHHhcCC-----HHHHHHHHHHHH---HcC------CCcCHH-----
Q 012804 276 ------EQMVTDGVQLDIV----S---YNTLINLYCKEGK-----LEAAYLLLDEME---KQG------FECDKY----- 323 (456)
Q Consensus 276 ------~~~~~~~~~~~~~----~---~~~l~~~~~~~~~-----~~~a~~~~~~~~---~~~------~~~~~~----- 323 (456)
...... .++.. . +...+..-...|. -+.-..++.++. ++| .-|+..
T Consensus 356 q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~ 433 (932)
T KOG2053|consen 356 QLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDE 433 (932)
T ss_pred HHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHH
Confidence 222111 01111 0 1111111112231 223333333332 222 223322
Q ss_pred ----hHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC--ChhhHHH-
Q 012804 324 ----THTILIDGLCKAGNIK---GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--DSFTYSS- 393 (456)
Q Consensus 324 ----~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~- 393 (456)
+.+.++..|.+.++.. +|+-+++...... +-|..+--.++..|.-.|-+..|.++|..+.-+ ...+...
T Consensus 434 ~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~ 512 (932)
T KOG2053|consen 434 LLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL 512 (932)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH
Confidence 2345667787887754 5666666665553 556677778889999999999999999987666 2223333
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHH
Q 012804 394 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 445 (456)
Q Consensus 394 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 445 (456)
+...+...|++..+...+....+.=-..-..+-..+..|| +.|.+++..++
T Consensus 513 ~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~ySkI~em 563 (932)
T KOG2053|consen 513 IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAYSKIPEM 563 (932)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCchhhhHHH
Confidence 3345566889999999998887551111223444444455 66777665554
No 142
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.42 E-value=8e-06 Score=60.11 Aligned_cols=92 Identities=9% Similarity=-0.007 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHcc
Q 012804 325 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKA 401 (456)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~ 401 (456)
.-.+...+...|++++|.++|+.+.... +.+..-|..|..++-..|++++|+..|..+... ++..+..+..++...
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 3344444556677777777776666553 445556666666666667777777766665443 666666666666677
Q ss_pred CChhHHHHHHHHHHHc
Q 012804 402 KRLPSASKLLLSCLKS 417 (456)
Q Consensus 402 ~~~~~A~~~~~~~~~~ 417 (456)
|+.+.|.+.|+.++..
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 7777777666666554
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.37 E-value=3.2e-05 Score=67.48 Aligned_cols=124 Identities=16% Similarity=0.117 Sum_probs=82.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh
Q 012804 255 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 334 (456)
Q Consensus 255 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 334 (456)
...++..+...++++.|..+++++.+.. |+ ....+++.+...++..+|.+++.+..... +-+...+..-...+..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3445555566677777777777777653 33 33446666666777777777777776542 2255555555666777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhc
Q 012804 335 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 384 (456)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 384 (456)
.++++.|..+.+++.... |.+..+|..|..+|...|+++.|+-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777777752 4556677777777777777777777777654
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.37 E-value=2.8e-05 Score=67.78 Aligned_cols=123 Identities=15% Similarity=0.179 Sum_probs=85.2
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Q 012804 81 NSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKN 160 (456)
Q Consensus 81 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 160 (456)
..++..+...++++.|.++++++.+.. |+ ....++..+...++..+|.+++++..... +.+..........+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 445566666777888888888877754 33 33446677777777777888777777554 44566666666777777
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 012804 161 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 209 (456)
Q Consensus 161 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 209 (456)
++++.|+.+.+++.+. .|.+..+|..|..+|...|+++.|+..+..+.
T Consensus 248 ~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7888888888777776 23345577777788888888888877776554
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.28 E-value=2.3e-05 Score=56.94 Aligned_cols=95 Identities=16% Similarity=-0.007 Sum_probs=67.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHhccC------ChhhHHH
Q 012804 323 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN---LEAYNCIVDRLGKDGKIDHAINVFESMEVK------DSFTYSS 393 (456)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~ 393 (456)
.++..++..+...|++++|...+..+.... +.+ ...+..+..++.+.|++++|.+.|+.+... .+.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 355666777778888888888888877642 211 345566777788888888888888877653 2345677
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcC
Q 012804 394 MVHNLCKAKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 394 l~~~~~~~~~~~~A~~~~~~~~~~~ 418 (456)
++.++.+.|++++|.+.++++++..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 7777778888888888888887764
No 146
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.25 E-value=0.00056 Score=51.39 Aligned_cols=120 Identities=13% Similarity=0.015 Sum_probs=51.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC-----ChhhHHHHH
Q 012804 321 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMV 395 (456)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~ 395 (456)
+...-..|..+....|++.+|...|++...--+..|....-.+.++....+++..|...++...+. ++.....+.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 333333444444444444444444444443323334444444444444444444444444443332 333334444
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHH
Q 012804 396 HNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 442 (456)
Q Consensus 396 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 442 (456)
+++...|++.+|...|+.+... -|++........-+.++|+.++|
T Consensus 168 R~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHH
Confidence 4444455555555555544432 23333333333344444444443
No 147
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.23 E-value=0.0006 Score=56.05 Aligned_cols=178 Identities=14% Similarity=0.071 Sum_probs=110.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCccCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh
Q 012804 258 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS---YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 334 (456)
Q Consensus 258 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 334 (456)
....+...|++++|...|+.+....+.+ ... .-.++.+|.+.+++++|...+++..+..+.-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 4445566788888888888888763332 222 234567778888888888888888775332222223333333221
Q ss_pred --c---------------CC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccCChhhHHHH
Q 012804 335 --A---------------GN---IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSM 394 (456)
Q Consensus 335 --~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 394 (456)
. .| ...|...|+.+++. -|+ ..-..+|...+..+...-...-..+
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~la~~e~~i 181 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDRLAKYELSV 181 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 12344555555443 222 2234445544444444322222357
Q ss_pred HHHHHccCChhHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 012804 395 VHNLCKAKRLPSASKLLLSCLKS--GVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 451 (456)
Q Consensus 395 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 451 (456)
+..|.+.|.+..|+.-++.+++. +-+.....+..+..+|...|..++|..+...+..
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 77889999999999999999987 3334556777888999999999999998877654
No 148
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.19 E-value=0.00014 Score=53.75 Aligned_cols=99 Identities=8% Similarity=-0.133 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012804 286 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 365 (456)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 365 (456)
+....-.+...+...|++++|..+|+-+....+. +..-|..|..++-..|++++|+..|..+...+ +.++..+-.+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 3444445555666777888888777777765322 55556667777777777888888877777765 456677777777
Q ss_pred HHHhCCCHHHHHHHHHHhccC
Q 012804 366 RLGKDGKIDHAINVFESMEVK 386 (456)
Q Consensus 366 ~~~~~g~~~~a~~~~~~~~~~ 386 (456)
++...|+.+.|.+.|+.++..
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777788888777777765543
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.19 E-value=2.5e-05 Score=54.09 Aligned_cols=90 Identities=16% Similarity=0.036 Sum_probs=48.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCCh
Q 012804 363 IVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 439 (456)
Q Consensus 363 l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 439 (456)
++..+...|++++|...++++... +...+..++..+...|++++|.+.+++..+..+. +...+..++.++...|++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHHhH
Confidence 344444455555555555544433 2234445555555566666666666666554322 334555566666666666
Q ss_pred HHHHHHHHHHHhcc
Q 012804 440 REAKKIQSKIRMAK 453 (456)
Q Consensus 440 ~~A~~~~~~~~~~~ 453 (456)
++|...+.+..+..
T Consensus 85 ~~a~~~~~~~~~~~ 98 (100)
T cd00189 85 EEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHHHccC
Confidence 66666666655443
No 150
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.15 E-value=1.1e-05 Score=51.09 Aligned_cols=62 Identities=15% Similarity=0.005 Sum_probs=47.7
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhcccCC
Q 012804 394 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 456 (456)
Q Consensus 394 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 456 (456)
++..+.+.|++++|++.|+++++..+. +...+..++.++...|++++|..+|+++.+..+.|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 556778888888888888888877533 67788888888888888888888888887776654
No 151
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.15 E-value=4.3e-06 Score=45.14 Aligned_cols=33 Identities=30% Similarity=0.513 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCC
Q 012804 9 LLNICVCTFCKANRLEKAEAIIIDGIRLGVLPD 41 (456)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 41 (456)
+|+.+|.+|++.|++++|.++|++|.+.|..||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
No 152
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.15 E-value=4.7e-06 Score=44.60 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCC
Q 012804 8 RLLNICVCTFCKANRLEKAEAIIIDGIRLGVLP 40 (456)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 40 (456)
.+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 345555555555555555555555555555443
No 153
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.14 E-value=9e-05 Score=65.02 Aligned_cols=118 Identities=13% Similarity=0.137 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHHc--CCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHH
Q 012804 216 NAITYTTIMKCCFRNRKYKLGLEILSAMKRK--GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 293 (456)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 293 (456)
+......++..+....+.+.+..++.++... ....-+.+..++++.|...|..+.+..++..=...|+.||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444444555555555555555555554433 11122333345555555555555555555555555555555555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHH
Q 012804 294 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLC 333 (456)
Q Consensus 294 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 333 (456)
+..+.+.|++..|.++...|..++...+..|+...+.+|.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 5555555555555555555554443334444444343333
No 154
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.14 E-value=5.9e-05 Score=63.62 Aligned_cols=128 Identities=18% Similarity=0.103 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012804 288 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK-AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 366 (456)
Q Consensus 288 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 366 (456)
.+|..+++...+.+..+.|..+|.+..+.+ ..+..+|...+..-.. .++.+.|..+|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467788888888888999999999998543 2355566665555333 56777799999998876 57788889999999
Q ss_pred HHhCCCHHHHHHHHHHhccC------ChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 012804 367 LGKDGKIDHAINVFESMEVK------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 417 (456)
Q Consensus 367 ~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 417 (456)
+.+.|+.+.|+.+|++.... ....|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998876 2357888888888899999999999888876
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.14 E-value=0.00013 Score=52.83 Aligned_cols=100 Identities=8% Similarity=-0.131 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCC--CHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCC--CCHhHHHHH
Q 012804 8 RLLNICVCTFCKANRLEKAEAIIIDGIRLGVLP--DVVTYNMLIDAYCQFVSFDAGYTILNRMREAGIS--PDVVTYNSL 83 (456)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 83 (456)
.++..+...+.+.|++++|.+.|+.+.+..+.. ....+..+..++.+.|+++.|...|+.+...... .....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 345556666677777777777777776554321 1234555666667777777777777766654211 113445555
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCC
Q 012804 84 IAGATRNSLLSCSLDLLDEMLEMG 107 (456)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~ 107 (456)
..++...|+.++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 666666667777777776666653
No 156
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.13 E-value=4.6e-06 Score=45.01 Aligned_cols=31 Identities=45% Similarity=0.764 Sum_probs=12.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCC
Q 012804 80 YNSLIAGATRNSLLSCSLDLLDEMLEMGIPP 110 (456)
Q Consensus 80 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 110 (456)
|+.++.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 3333333333333333333333333333333
No 157
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.11 E-value=5.6e-06 Score=44.28 Aligned_cols=32 Identities=34% Similarity=0.601 Sum_probs=17.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCC
Q 012804 44 TYNMLIDAYCQFVSFDAGYTILNRMREAGISP 75 (456)
Q Consensus 44 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 75 (456)
+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 158
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=0.0041 Score=53.11 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=30.4
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 012804 86 GATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMI 139 (456)
Q Consensus 86 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 139 (456)
.+.+..++..|+..+...++..+. +..-|..-...+...|+++++.--.+.-.
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~ 110 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSV 110 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhhe
Confidence 344555666677777776666533 44555555555666666666655444433
No 159
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.09 E-value=9.3e-05 Score=50.49 Aligned_cols=75 Identities=16% Similarity=0.246 Sum_probs=37.1
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHhcCC-CCCHHhHHHHHHHHHccC--------ChhHHHHHHHHHHhCCCCCCHhHHHH
Q 012804 12 ICVCTFCKANRLEKAEAIIIDGIRLGV-LPDVVTYNMLIDAYCQFV--------SFDAGYTILNRMREAGISPDVVTYNS 82 (456)
Q Consensus 12 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (456)
..|..+...+++...-.+|+.+++.|+ .|++.+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 334445555666666666666666555 556666666555554322 11223344444444444444444444
Q ss_pred HHHH
Q 012804 83 LIAG 86 (456)
Q Consensus 83 l~~~ 86 (456)
++..
T Consensus 110 vl~~ 113 (120)
T PF08579_consen 110 VLGS 113 (120)
T ss_pred HHHH
Confidence 4443
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.09 E-value=6.2e-05 Score=65.95 Aligned_cols=101 Identities=12% Similarity=-0.089 Sum_probs=84.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCC
Q 012804 327 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKR 403 (456)
Q Consensus 327 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 403 (456)
.-...+...|++++|+..++++++.. +.+...+..+..+|.+.|++++|+..++++... +...|..++.+|...|+
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 34556778899999999999999874 667888999999999999999999999998776 66789999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHhHHHH
Q 012804 404 LPSASKLLLSCLKSGVRILKSAQKAV 429 (456)
Q Consensus 404 ~~~A~~~~~~~~~~~~~~~~~~~~~l 429 (456)
+++|+..|+++++.++. +......+
T Consensus 86 ~~eA~~~~~~al~l~P~-~~~~~~~l 110 (356)
T PLN03088 86 YQTAKAALEKGASLAPG-DSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 99999999999977533 44443333
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.09 E-value=0.00036 Score=54.36 Aligned_cols=90 Identities=14% Similarity=-0.018 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012804 288 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 365 (456)
Q Consensus 288 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 365 (456)
..+..+...+...|++++|...+++..+....+. ...+..+...+.+.|++++|...++++.+.. +.+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3455566666667777777777776665432221 3456666667777777777777777766642 334555566666
Q ss_pred HHHhCCCHHHHHH
Q 012804 366 RLGKDGKIDHAIN 378 (456)
Q Consensus 366 ~~~~~g~~~~a~~ 378 (456)
++...|+...+..
T Consensus 115 ~~~~~g~~~~a~~ 127 (172)
T PRK02603 115 IYHKRGEKAEEAG 127 (172)
T ss_pred HHHHcCChHhHhh
Confidence 6666666544443
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.08 E-value=0.00015 Score=63.62 Aligned_cols=93 Identities=13% Similarity=-0.084 Sum_probs=81.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 012804 292 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 371 (456)
Q Consensus 292 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 371 (456)
.-...+...|++++|+..|+++.+... .+...+..+..++...|++++|+..+++++... +.+...|..+..+|...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 345667789999999999999998743 367788889999999999999999999999874 567888999999999999
Q ss_pred CHHHHHHHHHHhccC
Q 012804 372 KIDHAINVFESMEVK 386 (456)
Q Consensus 372 ~~~~a~~~~~~~~~~ 386 (456)
++++|+..|+++...
T Consensus 85 ~~~eA~~~~~~al~l 99 (356)
T PLN03088 85 EYQTAKAALEKGASL 99 (356)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998876
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.08 E-value=0.00053 Score=58.20 Aligned_cols=132 Identities=17% Similarity=0.239 Sum_probs=61.9
Q ss_pred HHHHHHHc-CChHHHHHHHHHHHHC----CC-ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----cCHH-hH
Q 012804 258 VIAAFVKI-GRLKEATDYMEQMVTD----GV-QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-----CDKY-TH 325 (456)
Q Consensus 258 l~~~~~~~-~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~-~~ 325 (456)
+...|... |+++.|.+.|++..+. +. ..-...+..+...+.+.|++++|.++|++....... .+.. .+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 33444444 5666666666655542 10 111234455566666777777777777766543211 1111 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHh--CCCHHHHHHHHHHhccCChh
Q 012804 326 TILIDGLCKAGNIKGARLHLEYMNKI--GFDSN--LEAYNCIVDRLGK--DGKIDHAINVFESMEVKDSF 389 (456)
Q Consensus 326 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~ 389 (456)
...+-.+...||+..|...++..... ++..+ ......|+.++-. ...+++++.-|+.+...|..
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence 23333455566777777777766543 22222 3344555555532 23355555555555554433
No 164
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.07 E-value=1e-05 Score=54.22 Aligned_cols=81 Identities=12% Similarity=0.090 Sum_probs=48.2
Q ss_pred hCcHHHHHHHHHHHHhcCCC-CCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHH
Q 012804 20 ANRLEKAEAIIIDGIRLGVL-PDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLD 98 (456)
Q Consensus 20 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 98 (456)
+|+++.|+.+++++.+..+. ++...+..+..++.+.|++++|+++++. .+.+. .+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 56777777777777766542 2344455567777777777777777766 22211 122333445666777777777777
Q ss_pred HHHH
Q 012804 99 LLDE 102 (456)
Q Consensus 99 ~~~~ 102 (456)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
No 165
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.07 E-value=0.00012 Score=64.21 Aligned_cols=123 Identities=12% Similarity=0.098 Sum_probs=87.5
Q ss_pred CCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHC--CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHH
Q 012804 73 ISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEM--GIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATF 150 (456)
Q Consensus 73 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 150 (456)
.+.+......++..+....+++.+..++-+.... ....-..|..++++.|.+.|..+.++.++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3455666677777777777777777777777664 22223445567888888888888888888887777888888888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc
Q 012804 151 NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA 195 (456)
Q Consensus 151 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 195 (456)
+.++..+.+.|++..|.++...|...+...+..++...+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888877776665555666666555555444
No 166
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.04 E-value=0.0025 Score=52.42 Aligned_cols=184 Identities=13% Similarity=0.048 Sum_probs=107.3
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhH---HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 012804 41 DVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVT---YNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNS 117 (456)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 117 (456)
+...+-.....+...|++++|.+.|+.+...... +... .-.+..++.+.+++++|...+++..+..+......+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 4444444555566789999999999999876322 2222 23566778889999999999999988754333333444
Q ss_pred HHHHHHh--cC---------------C---hhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 012804 118 LMHCLFQ--LG---------------K---PDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG 177 (456)
Q Consensus 118 l~~~~~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 177 (456)
.+.+.+. .+ | ..+|...|+.+++. -|+. .-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH-
Confidence 4443321 11 1 13455556666554 2322 2234444433333322
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 012804 178 FVPELVTYNILIKGLCKAGRLRTARWILKELGDS--GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK 244 (456)
Q Consensus 178 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 244 (456)
-...--.+.+.|.+.|.+..|..-++.+.+. +.+........+..+|...|..++|..+...+.
T Consensus 174 ---la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ---LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ---HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0111113456677778887777777777653 223345556667777888888888777666554
No 167
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.04 E-value=2.2e-05 Score=50.32 Aligned_cols=67 Identities=9% Similarity=-0.071 Sum_probs=53.4
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccC-ChHHHHHHHHHHHhccc
Q 012804 387 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG-CRREAKKIQSKIRMAKI 454 (456)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~ 454 (456)
++..|..++..+...|++++|+..|+++++.++. ++..+..++.++...| ++++|++.+++..+.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3567778888888888888888888888887543 6778888888888888 68888888888876553
No 168
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.03 E-value=0.00029 Score=59.54 Aligned_cols=131 Identities=14% Similarity=0.113 Sum_probs=99.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 012804 253 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK-EGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 331 (456)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 331 (456)
.+|..++...-+.+..+.|+.+|.+..+.+ ..+..+|......-.. .++.+.|..+|+...+. +..+...+...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467778888888889999999999998653 2345566655555334 67777799999999876 45577888888999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHhccC
Q 012804 332 LCKAGNIKGARLHLEYMNKIGFDSNL---EAYNCIVDRLGKDGKIDHAINVFESMEVK 386 (456)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (456)
+...++.+.|..+|++.... ++++. ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998875 33332 58888888888999999999999888775
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.03 E-value=3.3e-05 Score=51.76 Aligned_cols=13 Identities=23% Similarity=0.046 Sum_probs=4.8
Q ss_pred CHHHHHHHHHHHH
Q 012804 337 NIKGARLHLEYMN 349 (456)
Q Consensus 337 ~~~~a~~~~~~~~ 349 (456)
+++.|+.+++++.
T Consensus 4 ~y~~Ai~~~~k~~ 16 (84)
T PF12895_consen 4 NYENAIKYYEKLL 16 (84)
T ss_dssp -HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 3334444444433
No 170
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.03 E-value=0.00017 Score=49.79 Aligned_cols=86 Identities=16% Similarity=0.151 Sum_probs=33.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHH
Q 012804 120 HCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 199 (456)
Q Consensus 120 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 199 (456)
..+...|++++|...++.+.+.. +.+...+..+...+...+++++|.+.++...... +.+...+..+...+...|+++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHH
Confidence 33334444444444444443332 2222333333444444444444444444443331 112233333344444444444
Q ss_pred HHHHHHHH
Q 012804 200 TARWILKE 207 (456)
Q Consensus 200 ~a~~~~~~ 207 (456)
.|...+..
T Consensus 86 ~a~~~~~~ 93 (100)
T cd00189 86 EALEAYEK 93 (100)
T ss_pred HHHHHHHH
Confidence 44444433
No 171
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=0.0066 Score=51.93 Aligned_cols=59 Identities=10% Similarity=-0.045 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHH
Q 012804 10 LNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMR 69 (456)
Q Consensus 10 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 69 (456)
.......+.+..++..|+..+..+++..+. ++.-|..-...+...|++++|.--.+.-.
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~ 110 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSV 110 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhhe
Confidence 334455677777888888888888877654 45556656666666677776655544443
No 172
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.03 E-value=0.00032 Score=59.52 Aligned_cols=127 Identities=17% Similarity=0.169 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC----CC-ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCcC--H
Q 012804 254 GYCTVIAAFVKIGRLKEATDYMEQMVTD----GV-QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK----QGFECD--K 322 (456)
Q Consensus 254 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~ 322 (456)
.|......|-..+++++|.+.|.+.... +- ..-...|.....+|.+. ++++|...+++..+ .| .|+ .
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA 114 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHH
Confidence 3444555555566666666666554332 11 11112233333333322 55555555555432 11 111 2
Q ss_pred HhHHHHHHHHHhc-CCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 012804 323 YTHTILIDGLCKA-GNIKGARLHLEYMNKI----GFDSN--LEAYNCIVDRLGKDGKIDHAINVFESM 383 (456)
Q Consensus 323 ~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 383 (456)
.++..+...|... |+++.|.+.|+++.+. + .+. ...+..++..+.+.|++++|.++|+++
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~ 181 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEV 181 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 2344444444444 5555555555554332 1 110 223334444455555555555555544
No 173
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.02 E-value=0.011 Score=54.21 Aligned_cols=206 Identities=9% Similarity=0.014 Sum_probs=128.0
Q ss_pred CCCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHH----------HHHHHccCChhHHHHHHHHHHhCC
Q 012804 3 GKLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNML----------IDAYCQFVSFDAGYTILNRMREAG 72 (456)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~~~~~~a~~~~~~~~~~~ 72 (456)
+.|.+..|..+.+.....-.++-|...|-+.... +.+.....+ ...-.-.|++++|.++|-.+.+++
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 5688999999999999888999999888765432 222111111 112223589999999998877653
Q ss_pred CCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 012804 73 ISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEM-GIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFN 151 (456)
Q Consensus 73 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 151 (456)
..+..+.+.|+|-...++++.--.. +-+.-...++.+...+.....|++|.+.|..-.. -.
T Consensus 765 ---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e 826 (1189)
T KOG2041|consen 765 ---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TE 826 (1189)
T ss_pred ---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hH
Confidence 3466677788887777766432110 0111245677888888888888888888765321 12
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 012804 152 IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR 231 (456)
Q Consensus 152 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 231 (456)
..+.++.+..++++-+.+-+.+. .+....-.+..++.+.|.-++|.+.+-+... |. ..+..|...+
T Consensus 827 ~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv~Ln 892 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRSL----PK-----AAVHTCVELN 892 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhccC----cH-----HHHHHHHHHH
Confidence 34566666666666555544443 3445566677778888888887776644322 11 2344566666
Q ss_pred chhHHHHHHHHH
Q 012804 232 KYKLGLEILSAM 243 (456)
Q Consensus 232 ~~~~a~~~~~~~ 243 (456)
++.+|.++.++.
T Consensus 893 QW~~avelaq~~ 904 (1189)
T KOG2041|consen 893 QWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHhc
Confidence 777666665443
No 174
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.02 E-value=0.0015 Score=52.33 Aligned_cols=172 Identities=13% Similarity=0.091 Sum_probs=97.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC--ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhc
Q 012804 258 VIAAFVKIGRLKEATDYMEQMVTDGV--QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 335 (456)
Q Consensus 258 l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 335 (456)
....+...|++.+|...|+.+....+ +-.......++.++.+.|+++.|...+++..+.-+.-...-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 34455677788888888887776521 1223445566777788888888888888877642211111122222222111
Q ss_pred -------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccCChhhHHHHHHHHHccC
Q 012804 336 -------------GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAK 402 (456)
Q Consensus 336 -------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 402 (456)
+...+|... +..++.-|=...-..+|...+..+...-...-..++..|.+.|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRG 155 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 111233333 3344444444555566666665555442233345778899999
Q ss_pred ChhHHHHHHHHHHHcCC--CCCHHhHHHHHHHHHccCChHHHHH
Q 012804 403 RLPSASKLLLSCLKSGV--RILKSAQKAVVDGLRHSGCRREAKK 444 (456)
Q Consensus 403 ~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 444 (456)
.+..|..-++.+++.=+ +.....+..++.++.+.|..+.|..
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 99999999999988722 1123466778889999998885543
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.00 E-value=0.00042 Score=53.98 Aligned_cols=97 Identities=11% Similarity=0.021 Sum_probs=48.1
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC--HhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 012804 44 TYNMLIDAYCQFVSFDAGYTILNRMREAGISPD--VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHC 121 (456)
Q Consensus 44 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 121 (456)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++....... +...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 344444555555555555555555544321111 234444555555555555555555555543211 33344444444
Q ss_pred HHhcCC--------------hhHHHHHHHHHHhC
Q 012804 122 LFQLGK--------------PDEANRVFQDMICG 141 (456)
Q Consensus 122 ~~~~~~--------------~~~a~~~~~~~~~~ 141 (456)
+...|+ +++|.+++++....
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 444444 46677777777654
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.98 E-value=0.00051 Score=53.29 Aligned_cols=81 Identities=12% Similarity=-0.134 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012804 287 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC--DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV 364 (456)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 364 (456)
...+..++..+...|++++|...+++.......+ ...++..+...+...|++++|...++.+.... +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445555666666777777777777765542222 12356666666777777777777777766542 33344444444
Q ss_pred HHHH
Q 012804 365 DRLG 368 (456)
Q Consensus 365 ~~~~ 368 (456)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
No 177
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.96 E-value=0.00014 Score=59.00 Aligned_cols=88 Identities=16% Similarity=0.021 Sum_probs=52.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 012804 297 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 376 (456)
Q Consensus 297 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 376 (456)
..+.+++.+|+..|.+.++... -|..-|..-..+|.+.|.++.|++-.+..+..+ +--...|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 4455666666666666666532 255555566666666666666666666665542 22245666666666666666666
Q ss_pred HHHHHHhccC
Q 012804 377 INVFESMEVK 386 (456)
Q Consensus 377 ~~~~~~~~~~ 386 (456)
++.|+++...
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 6666666555
No 178
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.96 E-value=0.00084 Score=47.84 Aligned_cols=92 Identities=17% Similarity=0.015 Sum_probs=46.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHH
Q 012804 293 LINLYCKEGKLEAAYLLLDEMEKQGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS---NLEAYNCIVDRL 367 (456)
Q Consensus 293 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~ 367 (456)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++...... +. +......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 34445556666666666666665554332 2344455555666666666666666655431 11 122222233345
Q ss_pred HhCCCHHHHHHHHHHhcc
Q 012804 368 GKDGKIDHAINVFESMEV 385 (456)
Q Consensus 368 ~~~g~~~~a~~~~~~~~~ 385 (456)
...|+.++|++.+-....
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 555666666655544433
No 179
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.95 E-value=0.00017 Score=61.13 Aligned_cols=129 Identities=15% Similarity=0.083 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCC-cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh----CC-CCCCH
Q 012804 288 VSYNTLINLYCKEGKLEAAYLLLDEM----EKQGFE-CDKYTHTILIDGLCKAGNIKGARLHLEYMNK----IG-FDSNL 357 (456)
Q Consensus 288 ~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~ 357 (456)
..|..|...|.-.|+++.|+..-+.- .+.|-. .....+..+..++.-.|+++.|.+.++.... .| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 34555556666677777776554432 122211 1233566677777777777777777776432 22 12234
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhccC---------ChhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 012804 358 EAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRLPSASKLLLSCLK 416 (456)
Q Consensus 358 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 416 (456)
.+..+|...|.-..+++.|+.++.+-... ...++..|..+|...|..++|+.+.+..++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 55666777777777777777777654332 445677777777777777777776665543
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.94 E-value=0.0044 Score=46.81 Aligned_cols=134 Identities=16% Similarity=0.113 Sum_probs=106.3
Q ss_pred CCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CcCHHhHH
Q 012804 248 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF-ECDKYTHT 326 (456)
Q Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 326 (456)
..|+......+..+....|+..+|...|++....-+.-|......+.++....+++..|...++.+.+.+. .-++.+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 36677777778889999999999999999998876667888888899999999999999999999887531 11344566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 012804 327 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 383 (456)
Q Consensus 327 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 383 (456)
.+.+.+...|.+..|+..|+..... -|+...-......+.+.|+.+++..-+..+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 7778889999999999999998875 677777667777888899887776554443
No 181
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.92 E-value=0.00023 Score=48.69 Aligned_cols=67 Identities=27% Similarity=0.395 Sum_probs=28.6
Q ss_pred CChhHHHHHHHHHHHCCC-CCCHHhHHHHHHHHHhcC--------ChhHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 012804 91 SLLSCSLDLLDEMLEMGI-PPDVWSYNSLMHCLFQLG--------KPDEANRVFQDMICGDLTPCTATFNIMLNGL 157 (456)
Q Consensus 91 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 157 (456)
+++.....+|+.+++.|+ .|+..+|+.++....+.. +.-+.+.+|++|+..+++|+..+|+.++..+
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 444444444444444444 444444444444433321 1223334444444444444444444444433
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.92 E-value=0.001 Score=61.18 Aligned_cols=133 Identities=14% Similarity=0.060 Sum_probs=67.8
Q ss_pred CccCHHHHHHHHHHHHhc--C---CHHHHHHHHHHHHHcCCCcC-HHhHHHHHHHHHhcC--------CHHHHHHHHHHH
Q 012804 283 VQLDIVSYNTLINLYCKE--G---KLEAAYLLLDEMEKQGFECD-KYTHTILIDGLCKAG--------NIKGARLHLEYM 348 (456)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~--~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~--------~~~~a~~~~~~~ 348 (456)
.+.+...|...+++.... + +...|..+|++..+. .|+ ...+..+..++.... +...+.+..++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 345666666666654332 2 255666777776664 233 334444333332211 112223333332
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC--ChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 012804 349 NKI-GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 417 (456)
Q Consensus 349 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 417 (456)
... ..+.+...+..+.......|++++|...++++... +...|..++..+...|+.++|.+.++++...
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 221 12333455555555555566666666666666555 4445555666666666666666666666644
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.90 E-value=6.6e-05 Score=47.93 Aligned_cols=64 Identities=17% Similarity=0.285 Sum_probs=47.7
Q ss_pred HHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHH
Q 012804 17 FCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSL 83 (456)
Q Consensus 17 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (456)
+.+.|++++|+++|+.+....+. +...+..+..++.+.|++++|.++++.+... .|+...|..+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 35678888888888888887654 7777778888888888888888888888876 3554444433
No 184
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.90 E-value=0.0011 Score=60.80 Aligned_cols=136 Identities=13% Similarity=0.090 Sum_probs=87.0
Q ss_pred CCCCCHHhHHHHHHHHHccC-----ChhHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHcC--------CChhHHHHHHHH
Q 012804 37 GVLPDVVTYNMLIDAYCQFV-----SFDAGYTILNRMREAGISPD-VVTYNSLIAGATRN--------SLLSCSLDLLDE 102 (456)
Q Consensus 37 ~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~ 102 (456)
..+.+...|...+++..... +...|+.+|++..+.. |+ ...|..+..++... .++..+.+..+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34567777777777654322 3567778888877763 44 33444333322211 123344444444
Q ss_pred HHHC-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 012804 103 MLEM-GIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH 176 (456)
Q Consensus 103 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 176 (456)
.... ..+.+...|..+.......|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3332 123355667767666677788999999998888775 57788888888888899999999888888765
No 185
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.00078 Score=55.19 Aligned_cols=114 Identities=14% Similarity=0.041 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC---CHHHHHHH
Q 012804 303 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG---KIDHAINV 379 (456)
Q Consensus 303 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~ 379 (456)
.+....-++.-...+ +-|...|..|...|...|+.+.|...|+...+.. +++...+..+..++.... ...++..+
T Consensus 138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 444444444444443 3378899999999999999999999999988874 677888888887665443 35678899
Q ss_pred HHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 012804 380 FESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 380 ~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 418 (456)
|+++... ++.+...|...+...|++.+|...|+.|++..
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 9988877 67778888888999999999999999998774
No 186
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.89 E-value=0.00025 Score=60.17 Aligned_cols=129 Identities=12% Similarity=-0.044 Sum_probs=94.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---------Chh
Q 012804 324 THTILIDGLCKAGNIKGARLHLEYMN----KIGFD-SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSF 389 (456)
Q Consensus 324 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~ 389 (456)
.|..|...|.-.|+++.|+...+.-+ +.|-. .....+..+..++.-.|+++.|.+.|+..... ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45666666667789999988776533 22311 12346777888999999999999999865433 445
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHc----C-CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhc
Q 012804 390 TYSSMVHNLCKAKRLPSASKLLLSCLKS----G-VRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 452 (456)
Q Consensus 390 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 452 (456)
+...|...|.-..++++|+.++.+-+.. + .--....+.+++.++...|..++|..+.+...+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6678889998889999999988775432 1 1124457778999999999999999998877654
No 187
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.00019 Score=58.31 Aligned_cols=99 Identities=16% Similarity=0.062 Sum_probs=82.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccCC---hhhHHHHHHHHHccCChh
Q 012804 329 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD---SFTYSSMVHNLCKAKRLP 405 (456)
Q Consensus 329 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 405 (456)
..-+.+.+++++|+..|.+++... +.|...|..-..+|.+.|.++.|++-.+..+..| ..+|..|..+|...|++.
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 344677899999999999999974 5667777778889999999999999999988874 467889999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHH
Q 012804 406 SASKLLLSCLKSGVRILKSAQKAVV 430 (456)
Q Consensus 406 ~A~~~~~~~~~~~~~~~~~~~~~l~ 430 (456)
+|++.|+++++. .|+..+|..-+
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHHH
Confidence 999999999955 56666665443
No 188
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.001 Score=54.49 Aligned_cols=116 Identities=14% Similarity=0.096 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC---CHHHHHHH
Q 012804 268 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG---NIKGARLH 344 (456)
Q Consensus 268 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~ 344 (456)
.+....-++.-+..++. |...|..|...|...|+.+.|..-|....+.. .++...+..+..++.... ...++..+
T Consensus 138 ~~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 44444444444444433 77788888888888888888888888877652 335666666666654332 34677788
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC
Q 012804 345 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 386 (456)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (456)
|+++...+ +.|......|...+...|++.+|...|+.|...
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 88877764 556777777777888888888888888877766
No 189
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.86 E-value=0.00065 Score=52.72 Aligned_cols=114 Identities=12% Similarity=0.005 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHhc-CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCC--CHhHHHHHHHHHHcCCChhHHHHH
Q 012804 23 LEKAEAIIIDGIRL-GVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISP--DVVTYNSLIAGATRNSLLSCSLDL 99 (456)
Q Consensus 23 ~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~ 99 (456)
+..+...+..+.+. +.......|..+...+...|++++|...|+........+ ...++..+...+...|++++|.+.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444555555322 222234566777777777888888888888876553222 234677777888888888888888
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHH-------hcCChhHHHHHHHH
Q 012804 100 LDEMLEMGIPPDVWSYNSLMHCLF-------QLGKPDEANRVFQD 137 (456)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~~~ 137 (456)
++....... ....++..+...+. ..|+++.|...+++
T Consensus 95 ~~~Al~~~~-~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 95 YFQALERNP-FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhCc-CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 888776532 23444555555555 67777655544443
No 190
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.82 E-value=0.00013 Score=46.01 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=46.1
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 012804 13 CVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREA 71 (456)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 71 (456)
+...+.+.|++++|+..|+.+++..+. +...+..+..++...|++++|...|+.+.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456778888888888888888887643 7778888888888888888888888888765
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.81 E-value=3.7e-05 Score=49.13 Aligned_cols=49 Identities=24% Similarity=0.272 Sum_probs=25.6
Q ss_pred hCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 012804 369 KDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 417 (456)
Q Consensus 369 ~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 417 (456)
..|++++|++.|+++... +...+..++.+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445555555555555433 4445555555555555555555555555543
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.81 E-value=0.00015 Score=46.36 Aligned_cols=65 Identities=12% Similarity=0.092 Sum_probs=53.8
Q ss_pred chHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccC-ChhHHHHHHHHHHhC
Q 012804 6 STRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFV-SFDAGYTILNRMREA 71 (456)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~ 71 (456)
++.+|..+...+...|++++|+..|+++++.++. +...|..+..++...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4678888888888999999999999998888754 6778888888888888 688888888887764
No 193
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.77 E-value=3.7e-05 Score=39.95 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHhcC
Q 012804 9 LLNICVCTFCKANRLEKAEAIIIDGIRLG 37 (456)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 37 (456)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45566666666666666666666655544
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.76 E-value=0.0031 Score=44.96 Aligned_cols=92 Identities=16% Similarity=0.075 Sum_probs=55.9
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHhcCCCCC--HHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC----HhHHHHHHH
Q 012804 12 ICVCTFCKANRLEKAEAIIIDGIRLGVLPD--VVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPD----VVTYNSLIA 85 (456)
Q Consensus 12 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~ 85 (456)
.+..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++...... |+ ......+.-
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHH
Confidence 345566677777777777777777665433 2245556667777777777777777776542 22 112222334
Q ss_pred HHHcCCChhHHHHHHHHHHH
Q 012804 86 GATRNSLLSCSLDLLDEMLE 105 (456)
Q Consensus 86 ~~~~~~~~~~a~~~~~~~~~ 105 (456)
++...|+.++|++.+-....
T Consensus 84 ~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 55566777777776655444
No 195
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.76 E-value=4.3e-05 Score=39.73 Aligned_cols=26 Identities=42% Similarity=0.653 Sum_probs=10.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHH
Q 012804 80 YNSLIAGATRNSLLSCSLDLLDEMLE 105 (456)
Q Consensus 80 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 105 (456)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 33334444444444444444443333
No 196
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.74 E-value=0.0065 Score=48.71 Aligned_cols=65 Identities=14% Similarity=0.019 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCC--CHHhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 012804 7 TRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLP--DVVTYNMLIDAYCQFVSFDAGYTILNRMREA 71 (456)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 71 (456)
+..+-.....+...|++.+|.+.|+.+....+.. ...+.-.++.++.+.|+++.|...++...+.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344444566777888888888888887764331 2235556677777888888888888887765
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.71 E-value=0.00086 Score=55.58 Aligned_cols=93 Identities=13% Similarity=-0.001 Sum_probs=62.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHhccC------ChhhHHHH
Q 012804 324 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSN---LEAYNCIVDRLGKDGKIDHAINVFESMEVK------DSFTYSSM 394 (456)
Q Consensus 324 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l 394 (456)
.|...+....+.|++++|...|+.+++.- |.+ ...+..++.+|...|++++|...|+.+... .+..+..+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34444444455677888888888777652 222 346666777777778888887777777643 34555666
Q ss_pred HHHHHccCChhHHHHHHHHHHHc
Q 012804 395 VHNLCKAKRLPSASKLLLSCLKS 417 (456)
Q Consensus 395 ~~~~~~~~~~~~A~~~~~~~~~~ 417 (456)
+..+...|++++|.+.|+++++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 66777777777777777777765
No 198
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.61 E-value=0.024 Score=51.62 Aligned_cols=92 Identities=14% Similarity=0.104 Sum_probs=44.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHH---------HHHhCCCCCChhHHHHHHHHHHhcCCh--HHHHHHHHHHHhCCCC
Q 012804 111 DVWSYNSLMHCLFQLGKPDEANRVFQ---------DMICGDLTPCTATFNIMLNGLCKNRYT--DNALRMFRGLQKHGFV 179 (456)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~~a~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~ 179 (456)
.+..+.+=+..|...|.+++|.++-- .+... ..+.-.++..-.+|.+..+. -+.+.-++++.+.|-.
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred ccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 34445555667777888777765411 11000 01112233333444443332 2333344555666665
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012804 180 PELVTYNILIKGLCKAGRLRTARWILKE 207 (456)
Q Consensus 180 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 207 (456)
|+... +...++-.|.+.+|-++|.+
T Consensus 633 P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 66543 23445566677777666654
No 199
>PRK15331 chaperone protein SicA; Provisional
Probab=97.59 E-value=0.0025 Score=47.48 Aligned_cols=85 Identities=7% Similarity=-0.020 Sum_probs=62.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHH
Q 012804 331 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSA 407 (456)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A 407 (456)
-+...|++++|..+|+-+...+ +.+..-|..|..++-..+++++|+..|..+... |+......+.++...|+.+.|
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 3456788888888888877654 445666777777777788888888887754433 677777777888888888888
Q ss_pred HHHHHHHHH
Q 012804 408 SKLLLSCLK 416 (456)
Q Consensus 408 ~~~~~~~~~ 416 (456)
...|+.+++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888887775
No 200
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.58 E-value=0.039 Score=47.15 Aligned_cols=278 Identities=13% Similarity=0.051 Sum_probs=168.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHHHHHHHH--HHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH----HHHHHHHHhcCch
Q 012804 160 NRYTDNALRMFRGLQKHGFVPELVTYNILI--KGLCKAGRLRTARWILKELGDSGHAPNAITY----TTIMKCCFRNRKY 233 (456)
Q Consensus 160 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~ 233 (456)
.|+-..|.++-.+..+. +..|....-.++ .+-.-.|+++.|.+-|+.|.. |+.+- ..|.-...+.|+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccH
Confidence 45556666555444322 122222222233 233456788888888888775 33332 2233333567777
Q ss_pred hHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CccCHHH--HHHHHHHHH---hcCCHHHHH
Q 012804 234 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG-VQLDIVS--YNTLINLYC---KEGKLEAAY 307 (456)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~---~~~~~~~a~ 307 (456)
+.|..+-++..... +.-.......+...+..|+++.|+++++.-.... +.++..- -..|+.+-. -.-+...|.
T Consensus 171 eaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 88887777776653 4445667777888888888888888887665532 2222211 112222211 123456666
Q ss_pred HHHHHHHHcCCCcCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH----HHHHHH
Q 012804 308 LLLDEMEKQGFECDKY-THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA----INVFES 382 (456)
Q Consensus 308 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a----~~~~~~ 382 (456)
..-.+..+. .|+.. .-.....++.+.|+..++-.+++.+-+. .|.+.++..+ .+.+.|+.... .+-+..
T Consensus 250 ~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY--~~ar~gdta~dRlkRa~~L~s 323 (531)
T COG3898 250 DDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALLY--VRARSGDTALDRLKRAKKLES 323 (531)
T ss_pred HHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHH--HHhcCCCcHHHHHHHHHHHHh
Confidence 665555543 44433 2233456788889999999999988876 4555554433 34455653221 123344
Q ss_pred hccCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcc-CChHHHHHHHHHHHhc
Q 012804 383 MEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS-GCRREAKKIQSKIRMA 452 (456)
Q Consensus 383 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 452 (456)
|...+..+...+..+-...|++..|..--+.... ..|....|..+.+.-... |+..+++.++.+..+.
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 5555778888888888889999888877776663 467888888888876555 9999999888776654
No 201
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.57 E-value=0.00036 Score=45.25 Aligned_cols=52 Identities=17% Similarity=0.087 Sum_probs=28.8
Q ss_pred HHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 012804 366 RLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 417 (456)
Q Consensus 366 ~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 417 (456)
.|.+.+++++|.++++.+... ++..|...+.++.+.|++++|.+.+++.++.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 445555555555555555444 4444555555555555555555555555544
No 202
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.51 E-value=0.002 Score=50.18 Aligned_cols=72 Identities=15% Similarity=0.230 Sum_probs=38.0
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 012804 161 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK----------------AGRLRTARWILKELGDSGHAPNAITYTTIM 224 (456)
Q Consensus 161 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 224 (456)
|..+=....++.|.+.|+.-|..+|+.|++.+=+ ..+.+-|++++++|...|+.||..++..++
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3344444444455555555555555555444432 112344566666666666666666666666
Q ss_pred HHHHhcCc
Q 012804 225 KCCFRNRK 232 (456)
Q Consensus 225 ~~~~~~~~ 232 (456)
+.+.+.+.
T Consensus 146 ~iFG~~s~ 153 (228)
T PF06239_consen 146 NIFGRKSH 153 (228)
T ss_pred HHhccccH
Confidence 66655443
No 203
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.51 E-value=0.034 Score=44.87 Aligned_cols=176 Identities=14% Similarity=0.073 Sum_probs=96.0
Q ss_pred HHHHcCChHHHHHHHHHHHHCCC--ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhc---
Q 012804 261 AFVKIGRLKEATDYMEQMVTDGV--QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA--- 335 (456)
Q Consensus 261 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 335 (456)
.-.+.|++++|.+.|+.+....+ +-...+...++.++.+.++++.|...+++...........-|...+.++..-
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i 122 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccC
Confidence 34567888888888888886522 2245566677778888888999988888887753322233344444444321
Q ss_pred ----CCHHH---HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccCChhhHHHHHHHHHccCChhHHH
Q 012804 336 ----GNIKG---ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSAS 408 (456)
Q Consensus 336 ----~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 408 (456)
.|... |..-|+.++.. +|.+.. ..+|......+...-...=..+++.|.+.|.+-.|.
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~r-yPnS~Y--------------a~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQR-YPNSRY--------------APDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHH-CCCCcc--------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 23333 33333333332 222111 111111111111110111124556677777777777
Q ss_pred HHHHHHHHcCCCCCH---HhHHHHHHHHHccCChHHHHHHHHHHHhc
Q 012804 409 KLLLSCLKSGVRILK---SAQKAVVDGLRHSGCRREAKKIQSKIRMA 452 (456)
Q Consensus 409 ~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 452 (456)
.-++++++. .+-.. ..+..+..+|.+.|..++|.+.-+-+...
T Consensus 188 nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 188 NRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 777777766 22222 34445566777777777777765555443
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.50 E-value=0.0045 Score=51.40 Aligned_cols=96 Identities=5% Similarity=-0.116 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCC--HHhHHHHHHHHHccCChhHHHHHHHHHHhCCC--CCCHhHHHHHHH
Q 012804 10 LNICVCTFCKANRLEKAEAIIIDGIRLGVLPD--VVTYNMLIDAYCQFVSFDAGYTILNRMREAGI--SPDVVTYNSLIA 85 (456)
Q Consensus 10 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~ 85 (456)
|...+..+.+.|++++|...|+.+++..+... ..++..+..+|...|++++|...|+.+.+.-. +.....+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333444555555555555554432211 12344444444455555555555554443210 011222223333
Q ss_pred HHHcCCChhHHHHHHHHHHH
Q 012804 86 GATRNSLLSCSLDLLDEMLE 105 (456)
Q Consensus 86 ~~~~~~~~~~a~~~~~~~~~ 105 (456)
++...|+.++|.++|+.+.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 44444444445444444444
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.0077 Score=48.25 Aligned_cols=154 Identities=8% Similarity=-0.018 Sum_probs=114.4
Q ss_pred HHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChh
Q 012804 15 CTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLS 94 (456)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 94 (456)
+.+-.....+.-+++|++=. ..+.+.++..+.-.|.+.-...++.++.+...+.++.....|.+.-.+.|+.+
T Consensus 157 ~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k 229 (366)
T KOG2796|consen 157 ANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIK 229 (366)
T ss_pred HHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHH
Confidence 33333344466777776532 24567788888888899999999999998876778888889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHhHH-----HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 012804 95 CSLDLLDEMLEMGIPPDVWSYN-----SLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRM 169 (456)
Q Consensus 95 ~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 169 (456)
.|...|++..+..-..+..+.+ .....|.-.+++..|...+.+.+..+ +.++...|.-.-+..-.|+..+|++.
T Consensus 230 ~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~ 308 (366)
T KOG2796|consen 230 TAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQ 308 (366)
T ss_pred HHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHH
Confidence 9999999776543333333333 33445667788999999998888776 55666666666666667999999999
Q ss_pred HHHHHhC
Q 012804 170 FRGLQKH 176 (456)
Q Consensus 170 ~~~~~~~ 176 (456)
++.+.+.
T Consensus 309 ~e~~~~~ 315 (366)
T KOG2796|consen 309 LEAMVQQ 315 (366)
T ss_pred HHHHhcc
Confidence 9999886
No 206
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.45 E-value=0.002 Score=50.25 Aligned_cols=99 Identities=22% Similarity=0.328 Sum_probs=74.9
Q ss_pred HHHHHHHHhcCCCCCHHhHHHHHHHHHc-----cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcC-----------
Q 012804 27 EAIIIDGIRLGVLPDVVTYNMLIDAYCQ-----FVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRN----------- 90 (456)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------- 90 (456)
...|+..... ..+-.+|..++..+.+ .|..+-....+..|.+.|+.-|..+|+.|+..+=+.
T Consensus 34 ~~~f~~~~~~--~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 34 EELFERAPGQ--AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred HHHHHHHhhc--cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 3455554322 3466777777777754 466777778888888888888889999888876542
Q ss_pred -----CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 012804 91 -----SLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK 127 (456)
Q Consensus 91 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 127 (456)
.+-+-|++++++|...|+-||..++..++..+.+.+.
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346789999999999999999999999999887765
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.41 E-value=0.0013 Score=42.51 Aligned_cols=58 Identities=14% Similarity=0.125 Sum_probs=47.1
Q ss_pred HHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 012804 14 VCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAG 72 (456)
Q Consensus 14 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 72 (456)
-..|.+++++++|+++++.+++.++. ++..+.....++.+.|++++|.+.|+...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 35678888888888888888887754 77778888888888888888888888888763
No 208
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.40 E-value=0.022 Score=52.10 Aligned_cols=173 Identities=17% Similarity=0.105 Sum_probs=103.2
Q ss_pred HHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCcCHH-----hHHHHHHHHH----hcCCHHHH
Q 012804 272 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDKY-----THTILIDGLC----KAGNIKGA 341 (456)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~-----~~~~l~~~~~----~~~~~~~a 341 (456)
..+|.-+++. +|| .+..++....-.||-+.+++.+.+..+.+ +.-... .|...+..+. ...+.+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3344444443 333 23445555556677777777776665421 211111 1222222222 24456778
Q ss_pred HHHHHHHHhCCCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHhccC-------ChhhHHHHHHHHHccCChhHHHHHHHH
Q 012804 342 RLHLEYMNKIGFDSNLEAY-NCIVDRLGKDGKIDHAINVFESMEVK-------DSFTYSSMVHNLCKAKRLPSASKLLLS 413 (456)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~ 413 (456)
.++++.+.+. -|+...| -.-.+.+...|++++|++.|+++... ....+..++..+.-.++|++|.+.|.+
T Consensus 253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 8888888775 3444333 33445667788888888888865542 334556677778888889999998888
Q ss_pred HHHcCCCCCHHhHHHHH-HHHHccCCh-------HHHHHHHHHHHh
Q 012804 414 CLKSGVRILKSAQKAVV-DGLRHSGCR-------REAKKIQSKIRM 451 (456)
Q Consensus 414 ~~~~~~~~~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~~~~ 451 (456)
+.+..-. +..+|..+. .++...|+. ++|..++.++..
T Consensus 331 L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 331 LLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 8876433 444444333 355667777 778888877754
No 209
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.32 E-value=0.12 Score=46.94 Aligned_cols=344 Identities=11% Similarity=0.020 Sum_probs=176.6
Q ss_pred CHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 012804 76 DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLN 155 (456)
Q Consensus 76 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 155 (456)
+-..++.++.---.....+.+..+++.++.. .|.-..-|......=.+.|..+.+.++|++-+. +++.+...|...+.
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHH
Confidence 3445555555444444556666667666643 222233445555556677888888899888774 44666677766665
Q ss_pred HHH-hcCChHHHHHHHHHHHhC-CCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH---h
Q 012804 156 GLC-KNRYTDNALRMFRGLQKH-GFV-PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF---R 229 (456)
Q Consensus 156 ~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~ 229 (456)
.+. ..|+.+...+.|+...+. |.. -+...|...|..-..++++.....+++++++.. ...++..-.-|. +
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLN 197 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHh
Confidence 444 456777777788777654 211 244567777777777888888888888887631 222222222211 1
Q ss_pred c------CchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCc-cC-HHHHHHHH-------
Q 012804 230 N------RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ-LD-IVSYNTLI------- 294 (456)
Q Consensus 230 ~------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~------- 294 (456)
. ...+++.++-...... ......+.. +..+=..+...+.+ +. ....+.+-
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~--~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~ 262 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAER-------------SKITHSQEP--LEELEIGVKDSTDPSKSLTEEKTILKRIVSIHE 262 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhh-------------hhcccccCh--hHHHHHHHhhccCccchhhHHHHHHHHHHHHHH
Confidence 1 1122222211111110 000000111 11111111111000 00 00111111
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC---C----CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012804 295 NLYCKEGKLEAAYLLLDEMEKQG---F----ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 367 (456)
Q Consensus 295 ~~~~~~~~~~~a~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 367 (456)
.++.......+....++.-.... + .++..+|...+.--...|+.+...-++++..-- ...=...|-..+...
T Consensus 263 ~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m 341 (577)
T KOG1258|consen 263 KVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWM 341 (577)
T ss_pred HHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHH
Confidence 11222223333333444433321 1 123456777777778888888888888876532 112235566666666
Q ss_pred HhCCCHHHHHHHHHHhccC----ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHH-hHHHHHHHHHccCChHHH
Q 012804 368 GKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKS-AQKAVVDGLRHSGCRREA 442 (456)
Q Consensus 368 ~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A 442 (456)
...|+.+-|..++....+- .+.+...-....-..|+++.|..++++.... . |+.. .-..-+....+.|+.+.+
T Consensus 342 ~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~ 419 (577)
T KOG1258|consen 342 ESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDA 419 (577)
T ss_pred HHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhh
Confidence 6668888888777765543 2222222222334577888888888888765 3 4332 222333455677777777
Q ss_pred H
Q 012804 443 K 443 (456)
Q Consensus 443 ~ 443 (456)
.
T Consensus 420 ~ 420 (577)
T KOG1258|consen 420 N 420 (577)
T ss_pred h
Confidence 7
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.32 E-value=0.0011 Score=43.63 Aligned_cols=60 Identities=15% Similarity=0.063 Sum_probs=28.4
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHc----CCC-CC-HHhHHHHHHHHHccCChHHHHHHHHHHH
Q 012804 391 YSSMVHNLCKAKRLPSASKLLLSCLKS----GVR-IL-KSAQKAVVDGLRHSGCRREAKKIQSKIR 450 (456)
Q Consensus 391 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 450 (456)
++.+...|...|++++|++.++++++. |.. |+ ..++..++.++...|++++|.+++++..
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444555555555555555544422 111 11 2345555555566666666665555543
No 211
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.31 E-value=0.061 Score=49.16 Aligned_cols=78 Identities=10% Similarity=0.059 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCChh--HHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 012804 116 NSLMHCLFQLGKPD--EANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLC 193 (456)
Q Consensus 116 ~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 193 (456)
+..-.+|.+..+.. +..--++++.+.|-.|+... +...++-.|.+.+|-++|.+--.. +-.+..|.
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~e---------nRAlEmyT 669 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHE---------NRALEMYT 669 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCch---------hhHHHHHH
Confidence 33344555544432 33344566777776676543 445677789999999988654222 22345555
Q ss_pred HcCCHHHHHHHH
Q 012804 194 KAGRLRTARWIL 205 (456)
Q Consensus 194 ~~~~~~~a~~~~ 205 (456)
....++.|.+++
T Consensus 670 DlRMFD~aQE~~ 681 (1081)
T KOG1538|consen 670 DLRMFDYAQEFL 681 (1081)
T ss_pred HHHHHHHHHHHh
Confidence 555666665554
No 212
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.30 E-value=0.1 Score=45.68 Aligned_cols=422 Identities=14% Similarity=0.097 Sum_probs=225.3
Q ss_pred HHhhCcHHHHHHHHHHHHhcCCCCCH------HhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHH--H
Q 012804 17 FCKANRLEKAEAIIIDGIRLGVLPDV------VTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGA--T 88 (456)
Q Consensus 17 ~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~ 88 (456)
+.+++++.+|.++|.+..+.. ..++ ...+.++++|.. .+.+.....+....+. .| ...|-.+..+. -
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 457899999999999988653 2232 234567777764 4566666666555554 23 23344444433 3
Q ss_pred cCCChhHHHHHHHHHHHC--CCCC------------CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCChhHH
Q 012804 89 RNSLLSCSLDLLDEMLEM--GIPP------------DVWSYNSLMHCLFQLGKPDEANRVFQDMICGD----LTPCTATF 150 (456)
Q Consensus 89 ~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~ 150 (456)
+.+.+.+|.+.+..-... +.+| |-..-+..+.++...|++.++..+++++...= ..-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 678899999888776654 2221 12222456778899999999999999887543 23677888
Q ss_pred HHHHHHHHhc--------CCh-------HHHHHHHHHHHhC------CCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHH
Q 012804 151 NIMLNGLCKN--------RYT-------DNALRMFRGLQKH------GFVPELVTYNILIKGLCKAG--RLRTARWILKE 207 (456)
Q Consensus 151 ~~l~~~~~~~--------~~~-------~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~ 207 (456)
+.++-.+++. ... +.+.-+.+++... .+.|.......++....-.. +..--.++++.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 8755444432 111 2222222222221 12333333333333322111 12222333333
Q ss_pred HhhCCCCCCHHH-HHHHHHHHHhcCchhHHHHHHHHHHHcCCC----cChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012804 208 LGDSGHAPNAIT-YTTIMKCCFRNRKYKLGLEILSAMKRKGYT----FDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 282 (456)
Q Consensus 208 ~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 282 (456)
..+.-+.|+... ...+...+.+ +.+++..+.+.+....+. .-..++..++....+.++...|...+.-+...+
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 334444454332 2233333333 555555555554433211 123467777788888888888888887776542
Q ss_pred CccCHHHHH-------HHHHHHHh----cCCHHHHHHHHHHHHHcCCCcCHHhHHHHH---HHHHhcCC-HHHHHHHHHH
Q 012804 283 VQLDIVSYN-------TLINLYCK----EGKLEAAYLLLDEMEKQGFECDKYTHTILI---DGLCKAGN-IKGARLHLEY 347 (456)
Q Consensus 283 ~~~~~~~~~-------~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~-~~~a~~~~~~ 347 (456)
|+...-. .+....+. .-+...-+.+|......++. .......++ .-+-+.|. -++|..+++.
T Consensus 329 --p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 329 --PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred --CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 2222111 11112221 11223334556666554332 122222222 23445555 6888999998
Q ss_pred HHhCCCCCCHHHHHHHHH----HHHhC---CCHHHHHHHHHHhccC--------ChhhHHHHHHH--HHccCChhHHHHH
Q 012804 348 MNKIGFDSNLEAYNCIVD----RLGKD---GKIDHAINVFESMEVK--------DSFTYSSMVHN--LCKAKRLPSASKL 410 (456)
Q Consensus 348 ~~~~~~~~~~~~~~~l~~----~~~~~---g~~~~a~~~~~~~~~~--------~~~~~~~l~~~--~~~~~~~~~A~~~ 410 (456)
+.+.. +-|...-+.+.. .|..+ ..+.+-..+-+-+... +...-+.+..+ +...|++.++.-.
T Consensus 406 il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 406 ILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 88752 334433333222 22221 2222222222211111 33444555443 4568888887654
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 012804 411 LLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 451 (456)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 451 (456)
-.-.. .+.|++.++..++-++....++++|+.+++++..
T Consensus 485 s~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 485 SSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 43333 3678999999999999999999999999987754
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.29 E-value=0.1 Score=45.38 Aligned_cols=94 Identities=10% Similarity=0.028 Sum_probs=44.4
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHcC---CCcChhhHHHHHHHHHH---cCChHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 012804 222 TIMKCCFRNRKYKLGLEILSAMKRKG---YTFDGFGYCTVIAAFVK---IGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 295 (456)
Q Consensus 222 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 295 (456)
.++-+|....+++...++++.+.... +......-.....++.+ .|+.++|..++..++.....+++.++..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 33444555555555555555555431 11112222223334444 5566666666666444444455555555555
Q ss_pred HHHhc---------CCHHHHHHHHHHHHH
Q 012804 296 LYCKE---------GKLEAAYLLLDEMEK 315 (456)
Q Consensus 296 ~~~~~---------~~~~~a~~~~~~~~~ 315 (456)
.|... ...++|...|.+.-+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 44321 124556655555443
No 214
>PRK15331 chaperone protein SicA; Provisional
Probab=97.28 E-value=0.036 Score=41.51 Aligned_cols=92 Identities=11% Similarity=-0.049 Sum_probs=64.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 012804 293 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 372 (456)
Q Consensus 293 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 372 (456)
...-+...|++++|..+|.-+.-.++. +..-+..|..++-..+++++|...|......+ ..|+..+-....++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 334455788888888888877765433 55556677777777788888888888766554 3344445566778888888
Q ss_pred HHHHHHHHHHhccC
Q 012804 373 IDHAINVFESMEVK 386 (456)
Q Consensus 373 ~~~a~~~~~~~~~~ 386 (456)
.+.|+..|..+...
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888877664
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.25 E-value=0.00067 Score=44.65 Aligned_cols=59 Identities=17% Similarity=0.189 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhccC----------ChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 012804 357 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----------DSFTYSSMVHNLCKAKRLPSASKLLLSCL 415 (456)
Q Consensus 357 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 415 (456)
..++..+...|...|++++|++.|+++... ...++..++.++...|++++|++.++++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467888999999999999999999987644 24578889999999999999999999885
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.25 E-value=0.0079 Score=45.36 Aligned_cols=31 Identities=23% Similarity=0.176 Sum_probs=19.8
Q ss_pred CHHhHHHHHH---HHHhcCCHHHHHHHHHHHHhC
Q 012804 321 DKYTHTILID---GLCKAGNIKGARLHLEYMNKI 351 (456)
Q Consensus 321 ~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~ 351 (456)
|...|..++. .....++.+.+...++++...
T Consensus 2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~l 35 (146)
T PF03704_consen 2 DVDRFEALVREARAAARAGDPEEAIELLEEALAL 35 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3445555533 345678888899888888764
No 217
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.23 E-value=0.0056 Score=43.16 Aligned_cols=86 Identities=17% Similarity=0.084 Sum_probs=43.6
Q ss_pred HHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHc-CCCCCHHh---HHHHHHHHHccCC
Q 012804 366 RLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS-GVRILKSA---QKAVVDGLRHSGC 438 (456)
Q Consensus 366 ~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~---~~~l~~~~~~~g~ 438 (456)
+....|+.+.|++.|.+.... .+..|+.-..++.-+|+.++|++-+.++++. |.+ .... |..=+..|+..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 344555555555555554433 4555555555555556666666555555554 222 2221 2222234555566
Q ss_pred hHHHHHHHHHHHhc
Q 012804 439 RREAKKIQSKIRMA 452 (456)
Q Consensus 439 ~~~A~~~~~~~~~~ 452 (456)
.+.|+.-|+..-+.
T Consensus 131 dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 131 DDAARADFEAAAQL 144 (175)
T ss_pred hHHHHHhHHHHHHh
Confidence 66665555554443
No 218
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.23 E-value=0.019 Score=48.39 Aligned_cols=56 Identities=21% Similarity=0.102 Sum_probs=25.5
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHccCChHHHHHHHHH
Q 012804 393 SMVHNLCKAKRLPSASKLLLSCLKS----GVRI-LKSAQKAVVDGLRHSGCRREAKKIQSK 448 (456)
Q Consensus 393 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 448 (456)
.+..++...|+.-.|.+..++..+. |-++ ....+..+++.|+..|+.+.|+.-|+.
T Consensus 211 hmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 211 HMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 3444445555555555554444322 2111 122333455555555555555554443
No 219
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.22 E-value=0.12 Score=44.95 Aligned_cols=169 Identities=14% Similarity=0.017 Sum_probs=90.5
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHhCC---CCCCHhHHHHHHHHHHc---CCChhHHHHHHHHHHHCCCCCCHHh
Q 012804 41 DVVTYNMLIDAYCQFVSFDAGYTILNRMREAG---ISPDVVTYNSLIAGATR---NSLLSCSLDLLDEMLEMGIPPDVWS 114 (456)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~ 114 (456)
+..+...++-+|....+++..+++.+.+.... +.-....-....-++.+ .|+.++|++++..+......+++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 33344455566777777777777777776541 11112222223334445 6777777777777555555567777
Q ss_pred HHHHHHHHHhc---------CChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCC-h---HHHHHHH---H-HHHhCC
Q 012804 115 YNSLMHCLFQL---------GKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRY-T---DNALRMF---R-GLQKHG 177 (456)
Q Consensus 115 ~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~---~~a~~~~---~-~~~~~~ 177 (456)
|..+.+.|-.. ...++|...|.+.-... |+..+--.++..+.-.|. . .+..++- . .+.+.|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 77666655321 23567777776655442 333222122222222221 1 1222222 1 111222
Q ss_pred ---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 012804 178 ---FVPELVTYNILIKGLCKAGRLRTARWILKELGDS 211 (456)
Q Consensus 178 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 211 (456)
-..+-..+.+++.+..-.|+.++|.+..++|...
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2234555667778888888888888888888765
No 220
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.22 E-value=0.0052 Score=46.37 Aligned_cols=70 Identities=16% Similarity=0.232 Sum_probs=33.9
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHH-----CCCCCCHHh
Q 012804 44 TYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLE-----MGIPPDVWS 114 (456)
Q Consensus 44 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 114 (456)
+...++..+...|+++.|..+.+.+.... +-+...|..+|.++...|+...|.+.|+.+.. .|++|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34445555555566666666665555543 33455555566666666666666655555432 255555544
No 221
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.22 Score=47.20 Aligned_cols=178 Identities=15% Similarity=0.095 Sum_probs=111.9
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCH--HhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 012804 10 LNICVCTFCKANRLEKAEAIIIDGIRLGVLPDV--VTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGA 87 (456)
Q Consensus 10 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 87 (456)
...-++.+.+..-++-|+.+...- +..++. .........+.+.|++++|...|-+-... +.|. .++.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHh
Confidence 445677788888999998877653 222221 13344445567889999998887665432 2222 245556
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHH
Q 012804 88 TRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNAL 167 (456)
Q Consensus 88 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 167 (456)
....+...-..+++.+.+.|+. +...-..|+.+|.+.++.++-.+..+.-. .|.. ..-....+..+.+.+-.+.|.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 6777777788888899988876 55666788999999999888777765544 2211 112344556666667777776
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012804 168 RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 208 (456)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 208 (456)
.+-.+... .......+ +-..+++++|++.+..+
T Consensus 484 ~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 66554433 22222222 34556777777776654
No 222
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.18 E-value=0.18 Score=45.98 Aligned_cols=181 Identities=11% Similarity=0.043 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 012804 253 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 332 (456)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 332 (456)
.+|..-+.--...|+.+.+.-+++...-- ...=...|-..+......|+.+-|..++....+-..+-.+.+-..-..-+
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 44555555566677777777777666531 11112233344444444577777776666655432221221111111223
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHH---HHHHHhccC--ChhhHHHHHHH-----HHcc
Q 012804 333 CKAGNIKGARLHLEYMNKIGFDSN-LEAYNCIVDRLGKDGKIDHAI---NVFESMEVK--DSFTYSSMVHN-----LCKA 401 (456)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~---~~~~~~~~~--~~~~~~~l~~~-----~~~~ 401 (456)
-..|++..|..+++.+... . |+ ...-..-+....+.|+.+.+. +++...... +......+.-- +.-.
T Consensus 377 e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 4456777777777777665 2 33 233333344555666666666 333333322 22222222211 1225
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccC
Q 012804 402 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 437 (456)
Q Consensus 402 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 437 (456)
++.+.|..++.++.+. .+++...|..++..+..++
T Consensus 455 ~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 455 EDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 6677777777777655 3445556666665544443
No 223
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.083 Score=42.15 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=8.8
Q ss_pred HHHHccCChhHHHHHHHHH
Q 012804 396 HNLCKAKRLPSASKLLLSC 414 (456)
Q Consensus 396 ~~~~~~~~~~~A~~~~~~~ 414 (456)
-.+....++..|.+.++..
T Consensus 198 lv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 198 LVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred HHHhhHHHHHHHHHHhcch
Confidence 3344444455555555443
No 224
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.034 Score=46.45 Aligned_cols=153 Identities=9% Similarity=-0.041 Sum_probs=77.2
Q ss_pred hcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-C--CccCHHHHHHHHHHHHhcCCHHH
Q 012804 229 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-G--VQLDIVSYNTLINLYCKEGKLEA 305 (456)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~~~~~~ 305 (456)
.+|++.+|-..++++++.- |.|...+...=.+|.-.|+.+.-...++++... + .+-....-..+..++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 3455555555666665542 555555555556666666666666666666543 1 11112222233344455666666
Q ss_pred HHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 012804 306 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI---GFDSNLEAYNCIVDRLGKDGKIDHAINVFES 382 (456)
Q Consensus 306 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 382 (456)
|.+.-++..+.+ +.|...-......+...|++.++.++..+-... +.-.-...|....-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 666666665543 224444445555555666666666655443221 0000112233333344555666666666654
Q ss_pred h
Q 012804 383 M 383 (456)
Q Consensus 383 ~ 383 (456)
-
T Consensus 273 e 273 (491)
T KOG2610|consen 273 E 273 (491)
T ss_pred H
Confidence 3
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.09 E-value=0.024 Score=49.89 Aligned_cols=68 Identities=9% Similarity=-0.116 Sum_probs=55.3
Q ss_pred CCCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCH---HhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 012804 3 GKLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDV---VTYNMLIDAYCQFVSFDAGYTILNRMREA 71 (456)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 71 (456)
.|.++..|+.+..+|...|++++|+..|+++++.++. +. .+|..+..+|...|+.++|++.+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667888888888999999999999999988887643 22 35888888888899999999888888874
No 226
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.05 E-value=0.17 Score=43.53 Aligned_cols=298 Identities=13% Similarity=0.099 Sum_probs=156.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 012804 79 TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLC 158 (456)
Q Consensus 79 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 158 (456)
.|..+.......|+..-|..+++ .+|+..- =+..+.+.|+.+.| +.+..+.| .||. +|..++..--
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~------~Ep~~~~---qVplLL~m~e~e~A---L~kAi~Sg-D~DL-i~~vLl~L~~ 67 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLE------LEPRASK---QVPLLLKMGEDELA---LNKAIESG-DTDL-IYLVLLHLKR 67 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHH------cCCChHH---HHHHHhcCCchHHH---HHHHHHcC-CccH-HHHHHHHHHH
Confidence 35566667777888877777653 2345432 24456667776666 44555555 4443 3444444322
Q ss_pred hcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHH
Q 012804 159 KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 238 (456)
Q Consensus 159 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 238 (456)
+. ... +.+. +... .|.. ..+...|++..+.+.-..+|.+-.+ ........+-.++.. .+.+.-..
T Consensus 68 ~l-~~s---~f~~-il~~--~p~a---~~l~~~~~r~~~~~~L~~~y~q~d~----~~~~a~~~l~~~~~~-~~~~~~~~ 132 (319)
T PF04840_consen 68 KL-SLS---QFFK-ILNQ--NPVA---SNLYKKYCREQDRELLKDFYYQEDR----FQELANLHLQEALSQ-KDVEEKIS 132 (319)
T ss_pred hC-CHH---HHHH-HHHh--Ccch---HHHHHHHHHhccHHHHHHHHHhcch----HHHHHHHHHHHHHhC-CChHHHHH
Confidence 22 211 2332 2222 1221 2344556676666665555543211 011122222223222 44444444
Q ss_pred HHHHHHHcC-CCcChhhHHHHHHHHHHcCChHHHHHHHHHH---HHC-CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012804 239 ILSAMKRKG-YTFDGFGYCTVIAAFVKIGRLKEATDYMEQM---VTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 313 (456)
Q Consensus 239 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 313 (456)
.+..+.+.- -..+......+ .++..++++.- .+. +......+.+..+.-+...|+...|.++-.+.
T Consensus 133 ~L~~a~~~y~~~k~~~f~~~~---------~e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~F 203 (319)
T PF04840_consen 133 FLKQAQKLYSKSKNDAFEAKL---------IEEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEF 203 (319)
T ss_pred HHHHHHHHHHhcchhHHHHHH---------HHHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 444433221 01111111111 11222222211 111 11112234455566677788877777775555
Q ss_pred HHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccCChhhHHH
Q 012804 314 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSS 393 (456)
Q Consensus 314 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 393 (456)
. .|+...|..-+.+++..++|++...+... . -++..|..++.+|.+.|+..+|..+..++.. ..
T Consensus 204 k----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~~~~eA~~yI~k~~~------~~ 267 (319)
T PF04840_consen 204 K----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYGNKKEASKYIPKIPD------EE 267 (319)
T ss_pred C----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCCCHHHHHHHHHhCCh------HH
Confidence 2 36778888888888888888877765432 1 1235677788888888888888888877322 45
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcc
Q 012804 394 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 436 (456)
Q Consensus 394 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 436 (456)
-+..|.+.|++.+|.+..-+.. |...+..+...+-..
T Consensus 268 rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~~~ 304 (319)
T PF04840_consen 268 RVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCPGN 304 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCCCC
Confidence 6677888888888877654442 555555555444333
No 227
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.05 E-value=0.17 Score=43.51 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=81.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 012804 252 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 331 (456)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 331 (456)
..+.+.-+.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-..+... .-++.-|..++.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHH
Confidence 3455555667778888888887766653 36888899999999999999887766432 1245678889999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 012804 332 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 381 (456)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 381 (456)
|.+.|+..+|..+..+ +++ ..-+..|.++|++.+|.+.--
T Consensus 247 ~~~~~~~~eA~~yI~k-----~~~-----~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPK-----IPD-----EERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHCCCHHHHHHHHHh-----CCh-----HHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999888776 122 344677889999998877643
No 228
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.04 E-value=0.02 Score=41.74 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=23.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHhccC
Q 012804 333 CKAGNIKGARLHLEYMNKIGFDS---NLEAYNCIVDRLGKDGKIDHAINVFESMEVK 386 (456)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (456)
.+.|++++|.+.|+.+... ++. ....--.++.+|.+.|++++|...+++.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3445555555555555443 111 1233333444444555555555444444443
No 229
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.14 Score=41.46 Aligned_cols=129 Identities=13% Similarity=0.017 Sum_probs=79.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHH
Q 012804 290 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI-----GFDSNLEAYNCIV 364 (456)
Q Consensus 290 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~ 364 (456)
.+.++..+.-.|.+.-....+.+.++...+.++.....+++.-.+.||.+.|...|+...+. ++..+..+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34555555556666666777777776655556666677777777777777777777755433 2222333333333
Q ss_pred HHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 012804 365 DRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 365 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 418 (456)
..|.-++++.+|...+.++... ++...+.-+-++.-.|+..+|++.++.+++..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4455666777777777666554 44555555555556677777777777777553
No 230
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.32 Score=45.57 Aligned_cols=109 Identities=15% Similarity=0.079 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012804 289 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 368 (456)
Q Consensus 289 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 368 (456)
+.+.-+.-+...|+..+|.++-.+.+ -||...|..-+.++...+++++-+++-+... ++.-|.-+...|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34445555666777777777665553 4677777777777777777776665544322 1234555667777
Q ss_pred hCCCHHHHHHHHHHhccCChhhHHHHHHHHHccCChhHHHHHHH
Q 012804 369 KDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLL 412 (456)
Q Consensus 369 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 412 (456)
+.|+.++|.+++.+..... ..+.+|.+.|++.+|.++--
T Consensus 756 ~~~n~~EA~KYiprv~~l~-----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGLQ-----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hcccHHHHhhhhhccCChH-----HHHHHHHHhccHHHHHHHHH
Confidence 7888888877776655431 45667777777777766543
No 231
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.96 E-value=0.023 Score=46.26 Aligned_cols=93 Identities=16% Similarity=0.117 Sum_probs=61.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC------ChhhHHHHH
Q 012804 324 THTILIDGLCKAGNIKGARLHLEYMNKIG--FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK------DSFTYSSMV 395 (456)
Q Consensus 324 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~ 395 (456)
.|+..+.. ...|++..|...|...++.. -.-....+..|..++...|++++|..+|..+.+. -++.+..++
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555543 45667777777777777651 0112344556777777777777777777776654 456677777
Q ss_pred HHHHccCChhHHHHHHHHHHHc
Q 012804 396 HNLCKAKRLPSASKLLLSCLKS 417 (456)
Q Consensus 396 ~~~~~~~~~~~A~~~~~~~~~~ 417 (456)
....+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777777777777777777765
No 232
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0086 Score=51.32 Aligned_cols=126 Identities=16% Similarity=0.037 Sum_probs=91.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCC---------CHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---Ch
Q 012804 326 TILIDGLCKAGNIKGARLHLEYMNKI-----GFDS---------NLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DS 388 (456)
Q Consensus 326 ~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~ 388 (456)
..-...+.+.|++..|..-|+++... +.++ -...+..+..++.+.+++..|++..+.+... |.
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~ 291 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV 291 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence 34456788999999999999997643 1111 1234566777889999999999999988766 77
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCCh-HHHHHHHHHHHhc
Q 012804 389 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR-REAKKIQSKIRMA 452 (456)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 452 (456)
.....-..++...|+++.|+..|+++++..+. |..+-..+..+-.+.... +...++|..|-..
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 78888899999999999999999999977433 555555555554444443 3447777777543
No 233
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.92 E-value=0.21 Score=42.47 Aligned_cols=129 Identities=16% Similarity=0.159 Sum_probs=71.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC-----CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCcCH-----
Q 012804 257 TVIAAFVKIGRLKEATDYMEQMVTD-----GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK----QGFECDK----- 322 (456)
Q Consensus 257 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~----- 322 (456)
.+..++...+.++++.+.|+...+. +......++..|...|.+..|+++|.-+.....+ .++..-.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 3555666666777777777766543 1122334566677777777777777665554432 1211101
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHhcc
Q 012804 323 YTHTILIDGLCKAGNIKGARLHLEYMNK----IGFDS-NLEAYNCIVDRLGKDGKIDHAINVFESMEV 385 (456)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 385 (456)
.....+..++...|..-.|.+.-++..+ .|-.+ .......+.+.|...|+.+.|..-|+++..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 1222334455666666666666665433 23221 133445566677777877777777765543
No 234
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.18 Score=41.70 Aligned_cols=140 Identities=16% Similarity=0.177 Sum_probs=61.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 012804 297 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 376 (456)
Q Consensus 297 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 376 (456)
....|++.+|..+|+........ +...-..++.+|...|+.+.|..++..+....-.........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34455555555555555443221 23344445555555555555555555543221011111111122233333333322
Q ss_pred HHHHHHhccC--ChhhHHHHHHHHHccCChhHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHccCC
Q 012804 377 INVFESMEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS--GVRILKSAQKAVVDGLRHSGC 438 (456)
Q Consensus 377 ~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 438 (456)
..+-.+.... |...-..+...+...|+.++|.+.+-.+++. |.. |...-..++..+..-|.
T Consensus 223 ~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 223 QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCC
Confidence 2222222222 4444455555666666666666655555444 222 44444455555555553
No 235
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.90 E-value=0.0031 Score=35.78 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHH
Q 012804 389 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV 430 (456)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 430 (456)
.+|..+..+|.+.|++++|+++|+++++..+. |+..+..++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhh
Confidence 46778888888999999999999998887543 666665554
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.81 E-value=0.16 Score=46.66 Aligned_cols=177 Identities=16% Similarity=0.092 Sum_probs=112.2
Q ss_pred HHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCC-CCCC-----HhHHHHHHHHHHc----CCChhHH
Q 012804 27 EAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAG-ISPD-----VVTYNSLIAGATR----NSLLSCS 96 (456)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~----~~~~~~a 96 (456)
.-+|.-++.. ++|. ...++....=.|+-+.+++.+....+.+ +... .-.|...+..++. ....+.+
T Consensus 177 ~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3455555543 2333 4567777777888888888888776542 2111 1234555544443 4567888
Q ss_pred HHHHHHHHHCCCCCCHHhHH-HHHHHHHhcCChhHHHHHHHHHHhCC--C-CCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 012804 97 LDLLDEMLEMGIPPDVWSYN-SLMHCLFQLGKPDEANRVFQDMICGD--L-TPCTATFNIMLNGLCKNRYTDNALRMFRG 172 (456)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 172 (456)
.++++.+.++- |+...|. .-.+.+...|++++|++.|++..... . +.....+-.+...+.-.++|++|...|..
T Consensus 253 ~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 253 EELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 89999888863 4544443 34466777899999999999765421 1 12234455566778888999999999999
Q ss_pred HHhCCCCCcHHHHHHHH-HHHHHcCCH-------HHHHHHHHHHhh
Q 012804 173 LQKHGFVPELVTYNILI-KGLCKAGRL-------RTARWILKELGD 210 (456)
Q Consensus 173 ~~~~~~~~~~~~~~~l~-~~~~~~~~~-------~~a~~~~~~~~~ 210 (456)
+.+.+-- +...|.-+. .++...++. ++|..+|.+...
T Consensus 331 L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 331 LLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 8886322 444444433 344556666 888888887654
No 237
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.24 Score=41.04 Aligned_cols=139 Identities=14% Similarity=0.112 Sum_probs=79.3
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHH
Q 012804 261 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG 340 (456)
Q Consensus 261 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 340 (456)
.....|++.+|...|......... +......++.+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345667777777777777765333 3455566777777778877777777776543111111222222334444444444
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC-----ChhhHHHHHHHHHccC
Q 012804 341 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLCKAK 402 (456)
Q Consensus 341 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~ 402 (456)
...+-+..-.. +.|...-..+...+...|+.++|.+.+-.+... +...-..++..+.--|
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 44444444332 446677777777788888888887776655544 3334444444444333
No 238
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.77 E-value=0.036 Score=40.04 Aligned_cols=50 Identities=8% Similarity=0.102 Sum_probs=33.3
Q ss_pred CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 012804 318 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI-GFDSNLEAYNCIVDRL 367 (456)
Q Consensus 318 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 367 (456)
..|+..++.+++.+|+..+++..|.++.+...+. +++.+..+|..|+.-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4566777777777777777777777777775543 5566666776666643
No 239
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.75 E-value=0.35 Score=42.48 Aligned_cols=141 Identities=16% Similarity=0.071 Sum_probs=98.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012804 289 SYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 367 (456)
Q Consensus 289 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 367 (456)
+|...+..-.+....+.|..+|-++.+.+ +.++...+++++..++ .|+...|..+|+.-... ++.+..-....+..+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHHH
Confidence 44555666666777888888888888877 4566777777777554 57788888888875544 344444445566677
Q ss_pred HhCCCHHHHHHHHHHhccC-----ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 012804 368 GKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 433 (456)
Q Consensus 368 ~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 433 (456)
.+-|+-..|..+|+..... -...|..++.--..-|+...+..+-+++.+. -|...+.....+-|
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 7888888888888866555 2567888888888888888888888888755 34554544444444
No 240
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.74 E-value=0.15 Score=38.07 Aligned_cols=126 Identities=15% Similarity=0.183 Sum_probs=69.4
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 012804 10 LNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATR 89 (456)
Q Consensus 10 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 89 (456)
...++..+...+.+.....+++.+...+. .+...++.++..|++.+ ..+..+.+.. . .+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence 44566777777777777777777777653 46667777777777553 2333333331 1 223334446666666
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 012804 90 NSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQL-GKPDEANRVFQDMICGDLTPCTATFNIMLNGLC 158 (456)
Q Consensus 90 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 158 (456)
.+.++++.-++.++.. +...+..+... ++++.|.+.+.+ ..+...|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 6666666666655432 12223333333 566666665554 123445555555443
No 241
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.73 E-value=0.023 Score=50.07 Aligned_cols=64 Identities=16% Similarity=0.041 Sum_probs=49.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHhCCCHHHHHHHHHHhccC
Q 012804 321 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN-L---EAYNCIVDRLGKDGKIDHAINVFESMEVK 386 (456)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (456)
+...++.+..+|...|++++|+..|++.++. .|+ . ..|..+..+|...|+.++|+..++++.+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567788888888888888888888888775 344 3 34788888888888888888888887775
No 242
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.73 E-value=0.33 Score=41.85 Aligned_cols=247 Identities=12% Similarity=0.071 Sum_probs=104.0
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhH--HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 012804 125 LGKPDEANRVFQDMICGDLTPCTAT--FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 202 (456)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 202 (456)
.|+++.|.+-|+.|... |.... ...|.-...+.|+.+.|..+-+..-.. -+.-...+...+...+..|+|+.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~-Ap~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEK-APQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHhcCChHHHH
Confidence 45566666666655531 21111 111222223455555555555554443 1222344455555555666666666
Q ss_pred HHHHHHhhCC-CCCCHHH--HHHHHHHH---HhcCchhHHHHHHHHHHHcCCCcCh-hhHHHHHHHHHHcCChHHHHHHH
Q 012804 203 WILKELGDSG-HAPNAIT--YTTIMKCC---FRNRKYKLGLEILSAMKRKGYTFDG-FGYCTVIAAFVKIGRLKEATDYM 275 (456)
Q Consensus 203 ~~~~~~~~~~-~~~~~~~--~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~ 275 (456)
++++.-.... +.++..- -..|+.+- .-..+...|...-.+..+. .|+- ..-.....++.+.|+..++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHH
Confidence 6555443321 1122111 11111111 1122334444443333333 2221 11222334555666666666666
Q ss_pred HHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 012804 276 EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ-GFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 353 (456)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 353 (456)
+.+=+..+ .+.++. +..+.+.|+ .+..-+++.... ..+| +......+.++-...|++..|..--+...+.
T Consensus 287 E~aWK~eP--HP~ia~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~-- 358 (531)
T COG3898 287 ETAWKAEP--HPDIAL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE-- 358 (531)
T ss_pred HHHHhcCC--ChHHHH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--
Confidence 66555422 222221 112223333 233333332210 1122 3344445555555566665555555554442
Q ss_pred CCCHHHHHHHHHHHH-hCCCHHHHHHHHHHhcc
Q 012804 354 DSNLEAYNCIVDRLG-KDGKIDHAINVFESMEV 385 (456)
Q Consensus 354 ~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 385 (456)
.|....|..+.+.-. ..|+-.++...+.+...
T Consensus 359 ~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 359 APRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred CchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 455555555554432 33666666666555443
No 243
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.047 Score=47.06 Aligned_cols=126 Identities=17% Similarity=0.096 Sum_probs=97.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCcC---------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 012804 291 NTLINLYCKEGKLEAAYLLLDEMEKQ-----GFECD---------KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 356 (456)
Q Consensus 291 ~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 356 (456)
..-...|.+.|++..|...|++.... +..+. ..++..+..++.+.+++..|+......+..+ ++|
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N 290 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNN 290 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCc
Confidence 44567899999999999999997652 12211 2357778888999999999999999999986 788
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChh-HHHHHHHHHHHc
Q 012804 357 LEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLP-SASKLLLSCLKS 417 (456)
Q Consensus 357 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~ 417 (456)
...+..=..++...|+++.|+..|+++.+. |..+-..++..-.+..++. ...++|..|...
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 888888899999999999999999999887 5455555655555544443 446788888754
No 244
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.72 E-value=0.0057 Score=34.67 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 012804 8 RLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLI 49 (456)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 49 (456)
.++..+...|.+.|++++|.++|+++++..+. |...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhh
Confidence 46777888888888888888888888887653 555555443
No 245
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.26 Score=39.50 Aligned_cols=87 Identities=11% Similarity=0.127 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 012804 7 TRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAG 86 (456)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (456)
...|.....+|...+++++|...+.++.+. ...+...|.. . ..++.|.-+.+++.+. +--+..|+.....
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-A------KayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-A------KAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-H------HHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 456777778888888898888888877642 2223322221 1 2234444555555443 1123345555556
Q ss_pred HHcCCChhHHHHHHHHH
Q 012804 87 ATRNSLLSCSLDLLDEM 103 (456)
Q Consensus 87 ~~~~~~~~~a~~~~~~~ 103 (456)
|...|..+.|-..+++.
T Consensus 101 Y~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHhCCcchHHHHHHHH
Confidence 66666666655555543
No 246
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.64 E-value=0.05 Score=44.39 Aligned_cols=97 Identities=18% Similarity=0.139 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC-CCCHHHHHHHH
Q 012804 289 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFE--CDKYTHTILIDGLCKAGNIKGARLHLEYMNKI-GF-DSNLEAYNCIV 364 (456)
Q Consensus 289 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~ 364 (456)
.|+.-+. +.+.|++..|...|...++.... -....+.+|..++...|++++|..+|..+.+. +- +.-++.+-.|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 5665554 45677899999999988875321 13456778888999999999999999888764 11 22257778888
Q ss_pred HHHHhCCCHHHHHHHHHHhccC
Q 012804 365 DRLGKDGKIDHAINVFESMEVK 386 (456)
Q Consensus 365 ~~~~~~g~~~~a~~~~~~~~~~ 386 (456)
.+..+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8888999999999999988876
No 247
>PRK11906 transcriptional regulator; Provisional
Probab=96.54 E-value=0.34 Score=43.11 Aligned_cols=145 Identities=14% Similarity=0.017 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHC-CCccC-HHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC
Q 012804 268 LKEATDYMEQMVTD-GVQLD-IVSYNTLINLYCKE---------GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 336 (456)
Q Consensus 268 ~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 336 (456)
.+.|..+|.+..+. ...|+ ...|..+..++... .+..+|.++.+...+.+. .|......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhc
Confidence 45566666666622 12222 34444444433321 123445555555555542 25666666666556666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccCChh-----hHHHHHHHHHccCChhHHHHHH
Q 012804 337 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF-----TYSSMVHNLCKAKRLPSASKLL 411 (456)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~A~~~~ 411 (456)
+++.|...|++....+ |.....|........-+|+.++|.+.+++....+|. .....+..|+. ...++|++++
T Consensus 353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 430 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLY 430 (458)
T ss_pred chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHHH
Confidence 6777777777766653 334555555555666667777777777765555322 12222223333 3456666665
Q ss_pred HHHH
Q 012804 412 LSCL 415 (456)
Q Consensus 412 ~~~~ 415 (456)
.+-.
T Consensus 431 ~~~~ 434 (458)
T PRK11906 431 YKET 434 (458)
T ss_pred hhcc
Confidence 5443
No 248
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.42 E-value=0.1 Score=37.80 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHc-CCCcChhhHHHHHH
Q 012804 214 APNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYTFDGFGYCTVIA 260 (456)
Q Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 260 (456)
.|+..+..+++.+|+..+++..|.++.+...+. +++.+..+|..+++
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344444444444444444444444444444433 33333344444443
No 249
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=1.1 Score=42.99 Aligned_cols=150 Identities=9% Similarity=0.080 Sum_probs=84.3
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCCCH--hHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 012804 45 YNMLIDAYCQFVSFDAGYTILNRMREAGISPDV--VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCL 122 (456)
Q Consensus 45 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 122 (456)
...-+..+.+..-++-|+.+-+. .+..++. .........+.+.|++++|...|-+-+.. ++|. .++.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHh
Confidence 34556666677777777666543 2212221 11222334445677788777776555432 2222 245556
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 012804 123 FQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 202 (456)
Q Consensus 123 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 202 (456)
....++.+--.+++.+.+.| -.+...-..|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++|.
T Consensus 408 Ldaq~IknLt~YLe~L~~~g-la~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKG-LANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcc-cccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 66666667777777777777 3445555677778888887777766665554 2211 112334555566666666665
Q ss_pred HHHHH
Q 012804 203 WILKE 207 (456)
Q Consensus 203 ~~~~~ 207 (456)
.+-..
T Consensus 484 ~LA~k 488 (933)
T KOG2114|consen 484 LLATK 488 (933)
T ss_pred HHHHH
Confidence 55443
No 250
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.32 E-value=0.18 Score=45.58 Aligned_cols=159 Identities=13% Similarity=0.041 Sum_probs=93.2
Q ss_pred HHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChh
Q 012804 15 CTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLS 94 (456)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 94 (456)
....-+|+++++.++.+.-.-. +..+....+.++..+.+.|..+.|+++-..-. .-.....+.|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 4455677888877766521111 11124457778888888888888876653321 1244556778887
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 012804 95 CSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQ 174 (456)
Q Consensus 95 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 174 (456)
.|.++.+++ .+...|..|.....+.|+++-|++.|.+.. -|..|+-.|.-.|+.+...++.+...
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHH
Confidence 777765432 366678888888888888888888887753 34566667777788777777777766
Q ss_pred hCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012804 175 KHGFVPELVTYNILIKGLCKAGRLRTARWILKE 207 (456)
Q Consensus 175 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 207 (456)
..|- ++....++.-.|+.++..+++..
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 6532 44445555666777777766654
No 251
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.32 E-value=0.26 Score=36.19 Aligned_cols=82 Identities=12% Similarity=-0.008 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCC--CHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHH
Q 012804 7 TRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLP--DVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLI 84 (456)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 84 (456)
+..+-.-.....+.|++++|.+.|+.+..+-+.. ...+.-.++.++.+.+++++|...+++..+....-....|...+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3333344556667788888888888777654321 23355567777777888888888887777764322223344444
Q ss_pred HHHH
Q 012804 85 AGAT 88 (456)
Q Consensus 85 ~~~~ 88 (456)
.+++
T Consensus 90 ~gL~ 93 (142)
T PF13512_consen 90 RGLS 93 (142)
T ss_pred HHHH
Confidence 4443
No 252
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.23 E-value=0.23 Score=44.93 Aligned_cols=27 Identities=11% Similarity=0.120 Sum_probs=12.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012804 181 ELVTYNILIKGLCKAGRLRTARWILKE 207 (456)
Q Consensus 181 ~~~~~~~l~~~~~~~~~~~~a~~~~~~ 207 (456)
+...|..|.....+.|+++-|.+.|.+
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 334444455555555555555444443
No 253
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.22 E-value=0.33 Score=36.18 Aligned_cols=84 Identities=21% Similarity=0.151 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhc
Q 012804 256 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 335 (456)
Q Consensus 256 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 335 (456)
..++..+...+.......+++.+...+. .+....+.++..|++.+ ..+....+.. ..+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3455555555666666666666665543 45556666666666543 2233333321 11223334455555555
Q ss_pred CCHHHHHHHHHH
Q 012804 336 GNIKGARLHLEY 347 (456)
Q Consensus 336 ~~~~~a~~~~~~ 347 (456)
+-++++..++.+
T Consensus 83 ~l~~~~~~l~~k 94 (140)
T smart00299 83 KLYEEAVELYKK 94 (140)
T ss_pred CcHHHHHHHHHh
Confidence 555555555544
No 254
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.21 E-value=0.8 Score=40.44 Aligned_cols=84 Identities=4% Similarity=-0.077 Sum_probs=61.1
Q ss_pred CCCchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHH
Q 012804 3 GKLSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNS 82 (456)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (456)
.|.|..+|-.||+-+..+|.+++..++++++..-- +--..+|..-+..-...+++.....+|.+..... .+...|..
T Consensus 38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~l 114 (660)
T COG5107 38 NPTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWML 114 (660)
T ss_pred CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHH
Confidence 57788999999999999999999999999986432 2233467776766666678888888888877653 34556666
Q ss_pred HHHHHHc
Q 012804 83 LIAGATR 89 (456)
Q Consensus 83 l~~~~~~ 89 (456)
.+....+
T Consensus 115 Yl~YIRr 121 (660)
T COG5107 115 YLEYIRR 121 (660)
T ss_pred HHHHHHh
Confidence 5554444
No 255
>PRK11906 transcriptional regulator; Provisional
Probab=96.12 E-value=0.22 Score=44.28 Aligned_cols=159 Identities=13% Similarity=0.064 Sum_probs=107.6
Q ss_pred HHH--HHHHHHHHhc--C---CHHHHHHHHHHHHH-cCCCcC-HHhHHHHHHHHHhc---------CCHHHHHHHHHHHH
Q 012804 288 VSY--NTLINLYCKE--G---KLEAAYLLLDEMEK-QGFECD-KYTHTILIDGLCKA---------GNIKGARLHLEYMN 349 (456)
Q Consensus 288 ~~~--~~l~~~~~~~--~---~~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~ 349 (456)
..| ...+++.... + ..+.|..+|.+... ....|+ ...|..+..++... .+..+|.++.++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 4455554432 2 35678888998882 223443 44555555544321 23456778888888
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC-CCHHh
Q 012804 350 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR-ILKSA 425 (456)
Q Consensus 350 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 425 (456)
+.+ +.|+.....+..+..-.|+++.|...|+++... ...+|......+.-.|+.++|.+.++++++..+. .....
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 876 778888888888888889999999999998876 5567777888888999999999999998866432 12334
Q ss_pred HHHHHHHHHccCChHHHHHHHHH
Q 012804 426 QKAVVDGLRHSGCRREAKKIQSK 448 (456)
Q Consensus 426 ~~~l~~~~~~~g~~~~A~~~~~~ 448 (456)
....++.|+..+ .++|.+++-+
T Consensus 411 ~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 411 IKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHcCCc-hhhhHHHHhh
Confidence 444445666554 5667666544
No 256
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.09 E-value=0.42 Score=36.11 Aligned_cols=131 Identities=12% Similarity=0.116 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHH
Q 012804 286 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY-THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE-AYNCI 363 (456)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 363 (456)
+...|...++ +.+.+..++|+.-|..+.+.|...-+. ............|+...|...|.++-.....|-.. -...|
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 4455555444 356778888999999988876542211 12223344567788888999998887653233221 11111
Q ss_pred --HHHHHhCCCHHHHHHHHHHhccC----ChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 012804 364 --VDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 417 (456)
Q Consensus 364 --~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 417 (456)
...+...|.+++...-.+.+... ....-..|.-+-.+.|++.+|.+.|+....-
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 22456778888877777665544 2233455666667888888888888887654
No 257
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.98 E-value=0.13 Score=36.52 Aligned_cols=55 Identities=15% Similarity=0.050 Sum_probs=34.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012804 296 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 351 (456)
Q Consensus 296 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (456)
+....|+.+.|++.|.+....- +-....|+.-.+++.-.|+.++|..-+.+..+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 4556666777776666666542 225556666666666666666666666666554
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.79 E-value=1 Score=38.15 Aligned_cols=115 Identities=14% Similarity=0.066 Sum_probs=48.2
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCChhHHHHHHHHHHhcCChHHH
Q 012804 90 NSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICG---DLTPCTATFNIMLNGLCKNRYTDNA 166 (456)
Q Consensus 90 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 166 (456)
.|+..+|-..++++.+. .|.|...+...=.+|.-.|+...-...++++... ++|-.......+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 44444444444444443 2234444444444444455555444444444432 1111112222223333444555555
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 012804 167 LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 206 (456)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 206 (456)
++.-++..+.+ +.|...-.+....+-..|++.++.++..
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 55555444432 1233333344444444455555444443
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.77 E-value=1.3 Score=39.94 Aligned_cols=59 Identities=14% Similarity=0.018 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhc
Q 012804 326 TILIDGLCKAGNIKGARLHLEYMNKIG-FDSNLEAYNCIVDRLGKDGKIDHAINVFESME 384 (456)
Q Consensus 326 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 384 (456)
..+..++.+.|+.++|++.++++.+.. ...+..+...|+.++...+.+.++..++.+..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 344455556666666666666665431 11123344555666666666666666665543
No 260
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.72 E-value=0.032 Score=29.27 Aligned_cols=30 Identities=13% Similarity=-0.093 Sum_probs=14.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcccC
Q 012804 426 QKAVVDGLRHSGCRREAKKIQSKIRMAKIS 455 (456)
Q Consensus 426 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 455 (456)
+..++.++...|++++|++.+++..+..+.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 344444555555555555555555444443
No 261
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.71 E-value=1.4 Score=39.08 Aligned_cols=405 Identities=11% Similarity=0.047 Sum_probs=214.8
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHH--HHccCChhHHHHHHHHHHhC--CCCCC---------
Q 012804 10 LNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDA--YCQFVSFDAGYTILNRMREA--GISPD--------- 76 (456)
Q Consensus 10 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~--~~~~~--------- 76 (456)
-+.++++|... +.+.-...+....+..+ + ..|-.+..+ +.+.+.+++|.+.+...... +..|.
T Consensus 49 ~grilnAffl~-nld~Me~~l~~l~~~~~--~-s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l 124 (549)
T PF07079_consen 49 GGRILNAFFLN-NLDLMEKQLMELRQQFG--K-SAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQL 124 (549)
T ss_pred hhHHHHHHHHh-hHHHHHHHHHHHHHhcC--C-chHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHH
Confidence 34566776643 44444444444444322 2 223333333 34678899999888877654 32221
Q ss_pred ---HhHHHHHHHHHHcCCChhHHHHHHHHHHHC----CCCCCHHhHHHHHHHHHhcC--------C-------hhHHHHH
Q 012804 77 ---VVTYNSLIAGATRNSLLSCSLDLLDEMLEM----GIPPDVWSYNSLMHCLFQLG--------K-------PDEANRV 134 (456)
Q Consensus 77 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~--------~-------~~~a~~~ 134 (456)
-..=+..+.++...|++.++..+++++... ...-+..+|+.++-.+.+.= . ++.+.-.
T Consensus 125 ~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY 204 (549)
T PF07079_consen 125 FSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFY 204 (549)
T ss_pred hhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHH
Confidence 111245677888999999999998888764 33467888887665554421 1 1122222
Q ss_pred HHHHHhC------CCCCChhHHHHHHHHHHhc--CChHHHHHHHHHHHhCCCCCcHH-HHHHHHHHHHHcCCHHHHHHHH
Q 012804 135 FQDMICG------DLTPCTATFNIMLNGLCKN--RYTDNALRMFRGLQKHGFVPELV-TYNILIKGLCKAGRLRTARWIL 205 (456)
Q Consensus 135 ~~~~~~~------~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~ 205 (456)
..++... .+.|....+..++....-. .+..--.++++.....-+.|+-. ....+...+.. +.+++..+-
T Consensus 205 ~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~c 282 (549)
T PF07079_consen 205 LKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFC 282 (549)
T ss_pred HHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHH
Confidence 2222211 1223223333333222211 11222233333333333334422 22333333333 455555554
Q ss_pred HHHhhCCCC----CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHH-------HHHHHHH----HcCChHH
Q 012804 206 KELGDSGHA----PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC-------TVIAAFV----KIGRLKE 270 (456)
Q Consensus 206 ~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~----~~~~~~~ 270 (456)
+.+....+. .-..++..++....+.++...|.+.+.-+.-.+ |+...-. .+-...+ ...+...
T Consensus 283 e~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~ 360 (549)
T PF07079_consen 283 EAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRD 360 (549)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHH
Confidence 444332211 123567778888888999999988888777553 2221111 1111111 1112333
Q ss_pred HHHHHHHHHHCCCccCHHHHHHH---HHHHHhcCC-HHHHHHHHHHHHHcCCCcCHHh----HHHHHHHHH---hcCCHH
Q 012804 271 ATDYMEQMVTDGVQLDIVSYNTL---INLYCKEGK-LEAAYLLLDEMEKQGFECDKYT----HTILIDGLC---KAGNIK 339 (456)
Q Consensus 271 a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~---~~~~~~ 339 (456)
-..+|+.+...++. ......-+ ..-+-+.|. -++|+.+++.+.+-. .-|..+ +..+=.+|. ....+.
T Consensus 361 yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~ 438 (549)
T PF07079_consen 361 YLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIP 438 (549)
T ss_pred HHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 44555555554332 11112222 333455665 788999999887642 113333 222333343 234456
Q ss_pred HHHHHHHHHHhCCCCCC----HHHHHHHHHH--HHhCCCHHHHHHH--HHHhccCChhhHHHHHHHHHccCChhHHHHHH
Q 012804 340 GARLHLEYMNKIGFDSN----LEAYNCIVDR--LGKDGKIDHAINV--FESMEVKDSFTYSSMVHNLCKAKRLPSASKLL 411 (456)
Q Consensus 340 ~a~~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~g~~~~a~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 411 (456)
+-..+-.-+.+.|++|- .+.-+.|.++ +...|++.++.-. |-....+++.+|..++-++....++++|...+
T Consensus 439 rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l 518 (549)
T PF07079_consen 439 RLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYL 518 (549)
T ss_pred HHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 66666666677787663 4455555553 4568999887643 33344458889999999999999999999998
Q ss_pred HHHHHcCCCCCHHhHHHH
Q 012804 412 LSCLKSGVRILKSAQKAV 429 (456)
Q Consensus 412 ~~~~~~~~~~~~~~~~~l 429 (456)
... +|+..++++-
T Consensus 519 ~~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 519 QKL-----PPNERMRDSK 531 (549)
T ss_pred HhC-----CCchhhHHHH
Confidence 865 5666666643
No 262
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.61 E-value=0.54 Score=33.70 Aligned_cols=61 Identities=20% Similarity=0.279 Sum_probs=29.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 012804 257 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 318 (456)
Q Consensus 257 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 318 (456)
..+..+...|.-++-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444455555555555555555432 234555555555566666666666666655555543
No 263
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.57 E-value=0.81 Score=35.48 Aligned_cols=145 Identities=14% Similarity=0.029 Sum_probs=78.1
Q ss_pred HHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 012804 272 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH--TILIDGLCKAGNIKGARLHLEYMN 349 (456)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~ 349 (456)
.++++.-.......-...|..++.... .+.+ +.......+...+......++ ..+...+...+++++|..-++...
T Consensus 39 W~ywq~~q~~q~~~AS~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l 116 (207)
T COG2976 39 WRYWQSHQVEQAQEASAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL 116 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 444444333222233445555555543 3333 444455555543212111122 223455677788888888777766
Q ss_pred hCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHhccC--ChhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 012804 350 KIGFDSN--LEAYNCIVDRLGKDGKIDHAINVFESMEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 350 ~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 418 (456)
......+ ...--.|.......|.+|+|...++..... .......-++++...|+.++|...|++.++.+
T Consensus 117 ~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 117 AQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 5311111 111223444566777777777777777666 33334455677777777777877777777664
No 264
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.55 E-value=1.3 Score=37.66 Aligned_cols=122 Identities=16% Similarity=0.085 Sum_probs=66.3
Q ss_pred HhhCcHHHHHHHHHHHHhcCCCCCHH--------hHHHHHHHHHccC-ChhHHHHHHHHHHhC--------CCCCCH---
Q 012804 18 CKANRLEKAEAIIIDGIRLGVLPDVV--------TYNMLIDAYCQFV-SFDAGYTILNRMREA--------GISPDV--- 77 (456)
Q Consensus 18 ~~~g~~~~A~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~--- 77 (456)
.++|+++.|..++.++.......++. .|+.-...+ ..+ +++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46899999999999887643122222 233333333 344 777777766665432 112222
Q ss_pred --hHHHHHHHHHHcCCChh---HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012804 78 --VTYNSLIAGATRNSLLS---CSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICG 141 (456)
Q Consensus 78 --~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 141 (456)
.++..++.++...+..+ +|.++++.+.... +-.+.++..-+..+.+.++.+.+.+.+.+|+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 33455566666655543 3444444443332 223444444555555566677777777777654
No 265
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.49 E-value=0.13 Score=42.11 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCC
Q 012804 129 DEANRVFQDMICGDLTPCTATFNIMLNGLCKNRY 162 (456)
Q Consensus 129 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 162 (456)
+-+++++++|...|+.||..+-..+++++.+.+-
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 3456666777766767776666666666666554
No 266
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.47 E-value=1.4 Score=37.49 Aligned_cols=61 Identities=11% Similarity=0.157 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCchh---HHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012804 220 YTTIMKCCFRNRKYK---LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 281 (456)
Q Consensus 220 ~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 281 (456)
+..++.++...+..+ +|..+++.+... .+-.+..+..-+..+.+.++.+.+.+.+..|+..
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 444555555555443 333444444332 1223344444455555566667777777666665
No 267
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.47 E-value=1.1 Score=36.47 Aligned_cols=72 Identities=15% Similarity=0.099 Sum_probs=38.2
Q ss_pred HHcCCChhHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 012804 87 ATRNSLLSCSLDLLDEMLEMGI--PPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLC 158 (456)
Q Consensus 87 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 158 (456)
-.+.|++++|.+.|+.+..+.+ +-...+...++.++.+.++++.|+..+++............|...+.+++
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 3456666666666666665421 12234444555566666666666666666665432222334444444444
No 268
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.45 E-value=1.4 Score=37.55 Aligned_cols=132 Identities=13% Similarity=0.236 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc--CC----ChhHHHHHHHHHHHCCC---CCCHHhHHHHHHHHHhcCC-
Q 012804 58 FDAGYTILNRMREAGISPDVVTYNSLIAGATR--NS----LLSCSLDLLDEMLEMGI---PPDVWSYNSLMHCLFQLGK- 127 (456)
Q Consensus 58 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 127 (456)
++..+.+++.+.+.|+..+..+|-+....... .. ...++.++++.|++..+ .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44567788888888888777666553333322 22 35678888888888642 2344455555433 3333
Q ss_pred ---hhHHHHHHHHHHhCCCCCChh--HHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 012804 128 ---PDEANRVFQDMICGDLTPCTA--TFNIMLNGLCKNRY--TDNALRMFRGLQKHGFVPELVTYNILIKG 191 (456)
Q Consensus 128 ---~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 191 (456)
.+.++.+|+.+...|...+.. ....++........ ..++.++++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 356777888888766554332 22222322222222 34778888888888888777766655433
No 269
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.44 E-value=1.2 Score=36.55 Aligned_cols=221 Identities=17% Similarity=0.036 Sum_probs=131.2
Q ss_pred cCCHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHc-CCCcChhhHHHHHHHHHHcCChHHHH
Q 012804 195 AGRLRTARWILKELGDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYTFDGFGYCTVIAAFVKIGRLKEAT 272 (456)
Q Consensus 195 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 272 (456)
.+....+...+......... ............+...+++..+...+...... ........+......+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555555555555443222 12455566666777777777777777776652 22444555556666666777777777
Q ss_pred HHHHHHHHCCCccCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCC--CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012804 273 DYMEQMVTDGVQLDIVSYNTLIN-LYCKEGKLEAAYLLLDEMEKQGF--ECDKYTHTILIDGLCKAGNIKGARLHLEYMN 349 (456)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 349 (456)
..+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 7777777653332 122222223 67777888888887777754221 1123333333444556677777777777777
Q ss_pred hCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHhccCCh---hhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 012804 350 KIGFDS-NLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS---FTYSSMVHNLCKAKRLPSASKLLLSCLKS 417 (456)
Q Consensus 350 ~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 417 (456)
... +. ....+..+...+...++++.|...+.......+ ..+..+...+...+..+++...+.+....
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 652 33 356666666777777777777777777666532 34444444555556677777777776655
No 270
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.41 E-value=0.026 Score=29.73 Aligned_cols=32 Identities=13% Similarity=0.024 Sum_probs=24.2
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHccCChHHHH
Q 012804 411 LLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 443 (456)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 443 (456)
|+++++..+. ++..|..++.+|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 4566666544 7788888888888888888875
No 271
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.37 E-value=0.23 Score=40.64 Aligned_cols=99 Identities=20% Similarity=0.315 Sum_probs=65.4
Q ss_pred CHHhHHHHHHHHHc-----cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcC----------------CChhHHHHH
Q 012804 41 DVVTYNMLIDAYCQ-----FVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRN----------------SLLSCSLDL 99 (456)
Q Consensus 41 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~~ 99 (456)
|-.+|-..+..+.. .+..+-....+..|.+.|+..|..+|+.|+..+-+. .+-+-++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 44444444444432 234555555666777777777777777777665432 233568999
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCCh-hHHHHHHHHHH
Q 012804 100 LDEMLEMGIPPDVWSYNSLMHCLFQLGKP-DEANRVFQDMI 139 (456)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~ 139 (456)
+++|...|+.||..+-..|+.++.+.+-. .+..++.-.|.
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 99999999999999999999999887754 34444444444
No 272
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.33 E-value=0.7 Score=33.18 Aligned_cols=138 Identities=14% Similarity=0.132 Sum_probs=71.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHH
Q 012804 297 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN-LEAYNCIVDRLGKDGKIDH 375 (456)
Q Consensus 297 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 375 (456)
..-.|..++..+++.+.... .+..-++.++--....-+-+-..+.++.+-+. +..+ ......++.+|...|.
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki-FDis~C~NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI-FDISKCGNLKRVIECYAKRNK--- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG-S-GGG-S-THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh-cCchhhcchHHHHHHHHHhcc---
Confidence 34467788888888777764 24555666654444444444444454444322 1110 1122333334433333
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhcc
Q 012804 376 AINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 453 (456)
Q Consensus 376 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 453 (456)
+.......+..+..+|+-+.-.+++..+.+. -++++..+..++.||.+.|+..++-.++.+.=+.+
T Consensus 85 -----------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 85 -----------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp -------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred -----------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 2333344556667777777777777776553 35677788888888888888888888777765544
No 273
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.32 E-value=0.31 Score=40.56 Aligned_cols=80 Identities=19% Similarity=0.123 Sum_probs=61.6
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHH-----CCCCCCHHhH
Q 012804 41 DVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLE-----MGIPPDVWSY 115 (456)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 115 (456)
-..++..++..+...|+++.+.+.++.+.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 34567788888888888888888888888764 45777888888888888888888888887765 4777877777
Q ss_pred HHHHHH
Q 012804 116 NSLMHC 121 (456)
Q Consensus 116 ~~l~~~ 121 (456)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 666655
No 274
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.31 E-value=2.7 Score=39.86 Aligned_cols=111 Identities=15% Similarity=0.093 Sum_probs=85.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccCChhhHHHHHHHHHccC
Q 012804 323 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAK 402 (456)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 402 (456)
-+.+.-+.-+...|+..+|.++-.+.. -||-..|..-+.+++..+++++-.++-++... |..|.-.+.+|.+.|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks--PIGy~PFVe~c~~~~ 758 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS--PIGYLPFVEACLKQG 758 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC--CCCchhHHHHHHhcc
Confidence 345556666778899899988876653 57778888888999999999987777665544 788888999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHH
Q 012804 403 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 448 (456)
Q Consensus 403 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 448 (456)
+.++|.+++-+.. |.+ ..+.+|.+.|++.+|....-+
T Consensus 759 n~~EA~KYiprv~--~l~-------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 759 NKDEAKKYIPRVG--GLQ-------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cHHHHhhhhhccC--ChH-------HHHHHHHHhccHHHHHHHHHH
Confidence 9999999987763 111 467788889999888776443
No 275
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.28 E-value=0.9 Score=34.16 Aligned_cols=56 Identities=13% Similarity=-0.111 Sum_probs=31.2
Q ss_pred HHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 012804 15 CTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREA 71 (456)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 71 (456)
..-.+.++.+++..+++.+.-..|. ....-..-...+...|+|.+|+.+|+.+...
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3345566777777777766554332 2222222334445667777777777776554
No 276
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.24 E-value=0.96 Score=34.28 Aligned_cols=138 Identities=10% Similarity=0.033 Sum_probs=76.9
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHh-HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHH-hHH--H
Q 012804 42 VVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVV-TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVW-SYN--S 117 (456)
Q Consensus 42 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~--~ 117 (456)
...|..-+.. .+.+..++|+.-|..+.+.|...-+. ............|+...|+..|+++-.....|-.. -.. .
T Consensus 59 gd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 3344444443 34566777777777777665432211 12223344556777777777777776543333222 111 1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 012804 118 LMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVP 180 (456)
Q Consensus 118 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 180 (456)
-...+...|.++......+.+...+-+.-...-..|.-+..+.|++.+|.+.|..+......|
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 122345667777777777766655433344445566666677777777777777766543333
No 277
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.18 E-value=0.28 Score=40.84 Aligned_cols=75 Identities=16% Similarity=0.124 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHH-----cCCCCCHHhHHHH
Q 012804 358 EAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLK-----SGVRILKSAQKAV 429 (456)
Q Consensus 358 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~l 429 (456)
.++..++..+...|+.+.+.+.+++.... +...|..++.+|.+.|+...|+..|+++.+ .|+.|.+.+...+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34555666666667777777776666655 556677777777777777777777666643 3677777666655
Q ss_pred HHH
Q 012804 430 VDG 432 (456)
Q Consensus 430 ~~~ 432 (456)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 555
No 278
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.08 E-value=3.5 Score=39.82 Aligned_cols=188 Identities=15% Similarity=0.061 Sum_probs=94.0
Q ss_pred HHcCChHHHHHHHHHHHHCCC-ccC-------HHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHcCCCcCHHhHH
Q 012804 263 VKIGRLKEATDYMEQMVTDGV-QLD-------IVSYNTLINLYCKEGKLEAAYLLLD--------EMEKQGFECDKYTHT 326 (456)
Q Consensus 263 ~~~~~~~~a~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~ 326 (456)
+-.+++..|...++.+.+..- .|+ +.++....-.+...|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 356888889988888876411 111 2222222233445799999999997 333444443444333
Q ss_pred HH--HHHHHhc--CCHHH--HHHHHHHHHhC-CCCC--CHHHHHHHH-HHHHhC--CCHHHHHHHHHHhcc--------C
Q 012804 327 IL--IDGLCKA--GNIKG--ARLHLEYMNKI-GFDS--NLEAYNCIV-DRLGKD--GKIDHAINVFESMEV--------K 386 (456)
Q Consensus 327 ~l--~~~~~~~--~~~~~--a~~~~~~~~~~-~~~~--~~~~~~~l~-~~~~~~--g~~~~a~~~~~~~~~--------~ 386 (456)
.+ +..+... ...++ +..+++.+... .-.| +..++..++ .++... -...++...+.+..+ .
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 32 1112222 22233 66677665442 1122 233334333 222211 112233333332211 1
Q ss_pred --ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC---CHHhHHH-----HHHHHHccCChHHHHHHHHHHHh
Q 012804 387 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI---LKSAQKA-----VVDGLRHSGCRREAKKIQSKIRM 451 (456)
Q Consensus 387 --~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~ 451 (456)
-..+++.+...+. .|+..+..+..........+. ....|.. +...+...|+.++|.....+..+
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 1222333333344 788887666666554332222 3445533 33457889999999999888765
No 279
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.03 E-value=0.24 Score=38.37 Aligned_cols=91 Identities=16% Similarity=0.013 Sum_probs=66.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHhCCCHHHHHHHHHHhccCChhhHHH---HHHHHH
Q 012804 328 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLE-----AYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSS---MVHNLC 399 (456)
Q Consensus 328 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---l~~~~~ 399 (456)
-..-+...|++++|..-|..++.. .++... .|..-..++.+.+.++.|+.-..++++.++..-.+ -+.+|-
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 344567889999999999999886 233322 23333446788899999999888888875543333 355777
Q ss_pred ccCChhHHHHHHHHHHHcCC
Q 012804 400 KAKRLPSASKLLLSCLKSGV 419 (456)
Q Consensus 400 ~~~~~~~A~~~~~~~~~~~~ 419 (456)
+...+++|++-|++.++..+
T Consensus 180 k~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDP 199 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCc
Confidence 88899999999999987743
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.01 E-value=0.057 Score=28.87 Aligned_cols=25 Identities=8% Similarity=0.004 Sum_probs=15.2
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHH
Q 012804 391 YSSMVHNLCKAKRLPSASKLLLSCL 415 (456)
Q Consensus 391 ~~~l~~~~~~~~~~~~A~~~~~~~~ 415 (456)
|..|+..|.+.|++++|++++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666644
No 281
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.95 E-value=0.56 Score=36.50 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=63.9
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC--HhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHH---H
Q 012804 44 TYNMLIDAYCQFVSFDAGYTILNRMREAGISPD--VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNS---L 118 (456)
Q Consensus 44 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l 118 (456)
.+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+...+.+....--.+....... .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 677888888888888888888888877643333 44567778888888888888887777655311111111111 1
Q ss_pred H--HHHHhcCChhHHHHHHHHHHh
Q 012804 119 M--HCLFQLGKPDEANRVFQDMIC 140 (456)
Q Consensus 119 ~--~~~~~~~~~~~a~~~~~~~~~ 140 (456)
. -.+...+++..|-+.|-+...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCc
Confidence 1 124456788888888876654
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.93 E-value=0.062 Score=28.73 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=17.3
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHH
Q 012804 425 AQKAVVDGLRHSGCRREAKKIQSKI 449 (456)
Q Consensus 425 ~~~~l~~~~~~~g~~~~A~~~~~~~ 449 (456)
++..++.+|.+.|++++|.+++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3566777777777777777777773
No 283
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.72 E-value=0.069 Score=28.00 Aligned_cols=29 Identities=10% Similarity=0.060 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 012804 389 FTYSSMVHNLCKAKRLPSASKLLLSCLKS 417 (456)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 417 (456)
.+|..++.++...|++++|+..|+++++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 34556666666666666666666666654
No 284
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.61 E-value=5.7 Score=40.07 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=12.6
Q ss_pred HHHHHHHHHccCChHHHHHH
Q 012804 426 QKAVVDGLRHSGCRREAKKI 445 (456)
Q Consensus 426 ~~~l~~~~~~~g~~~~A~~~ 445 (456)
...++.++...|..+.|.++
T Consensus 1187 ~~~Ll~~l~~~g~~eqa~~L 1206 (1265)
T KOG1920|consen 1187 LKRLLEVLVTFGMDEQARAL 1206 (1265)
T ss_pred HHHHHHHHHHcCCcHHHHHH
Confidence 44566666677776666654
No 285
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.43 E-value=4.7 Score=38.31 Aligned_cols=273 Identities=14% Similarity=0.088 Sum_probs=160.8
Q ss_pred hHHHHHHHHHHHhCCCCCcHHHHHHHHHH-----HHHcCCHHHHHHHHHHHhh-------CCCCCCHHHHHHHHHHHHhc
Q 012804 163 TDNALRMFRGLQKHGFVPELVTYNILIKG-----LCKAGRLRTARWILKELGD-------SGHAPNAITYTTIMKCCFRN 230 (456)
Q Consensus 163 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 230 (456)
...+.++++...+.|. ......+..+ +....+.+.|+.+|+.+.. .+ .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 4678888888887753 2222222222 3356689999999988765 33 333455566666664
Q ss_pred C-----chhHHHHHHHHHHHcCCCcChhhHHHHHHHHHH-cCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh----c
Q 012804 231 R-----KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK-IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK----E 300 (456)
Q Consensus 231 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 300 (456)
. +.+.|..++......+ .|+....-..+..... ..+...|.++|......|.. ..+-.+..+|.. .
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 3 5677999999888887 4554443322222222 24577899999999887643 223333333322 3
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---Hh----CCCH
Q 012804 301 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL---GK----DGKI 373 (456)
Q Consensus 301 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~ 373 (456)
.+...|..++++..+.| .|...--...+..+.. +.++.+.-.+..+...|.......-..+.... .. ..+.
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~ 455 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTL 455 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccch
Confidence 47888999999998887 3332322333333444 77777777777776665332222111111111 11 2246
Q ss_pred HHHHHHHHHhccC-ChhhHHHHHHHHHcc----CChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc----cCChHHHHH
Q 012804 374 DHAINVFESMEVK-DSFTYSSMVHNLCKA----KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH----SGCRREAKK 444 (456)
Q Consensus 374 ~~a~~~~~~~~~~-~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 444 (456)
..+...+.+.... +......+...|... .+++.|...+......+ ....-.++..+.. .. +..|.+
T Consensus 456 ~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a~~ 530 (552)
T KOG1550|consen 456 ERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLAKR 530 (552)
T ss_pred hHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHHHH
Confidence 6677777766655 677777777666543 35788888888887664 3333334444432 23 678888
Q ss_pred HHHHHHhc
Q 012804 445 IQSKIRMA 452 (456)
Q Consensus 445 ~~~~~~~~ 452 (456)
++.+..+.
T Consensus 531 ~~~~~~~~ 538 (552)
T KOG1550|consen 531 YYDQASEE 538 (552)
T ss_pred HHHHHHhc
Confidence 88777654
No 286
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.41 E-value=2 Score=34.02 Aligned_cols=29 Identities=17% Similarity=0.094 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 012804 389 FTYSSMVHNLCKAKRLPSASKLLLSCLKS 417 (456)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 417 (456)
.+|..++..+...|+.++|..+|+-++..
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 45555666666666666666666665544
No 287
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.37 E-value=2.4 Score=34.70 Aligned_cols=87 Identities=20% Similarity=0.233 Sum_probs=40.3
Q ss_pred HhcCchhHHHHHHHHHHHcCCCc-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHH
Q 012804 228 FRNRKYKLGLEILSAMKRKGYTF-DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 306 (456)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 306 (456)
...++.+.+...+....... +. ....+..+...+...++++.+...+......... ....+..+...+...+..+.+
T Consensus 178 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 255 (291)
T COG0457 178 EALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEA 255 (291)
T ss_pred HHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHH
Confidence 34444444444444444432 11 2334444444555555555555555555543211 122333333333355556666
Q ss_pred HHHHHHHHHc
Q 012804 307 YLLLDEMEKQ 316 (456)
Q Consensus 307 ~~~~~~~~~~ 316 (456)
...+......
T Consensus 256 ~~~~~~~~~~ 265 (291)
T COG0457 256 LEALEKALEL 265 (291)
T ss_pred HHHHHHHHHh
Confidence 6666665553
No 288
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.36 E-value=0.15 Score=26.63 Aligned_cols=30 Identities=10% Similarity=0.028 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHhcC
Q 012804 8 RLLNICVCTFCKANRLEKAEAIIIDGIRLG 37 (456)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 37 (456)
.+|..+...+...|++++|+..|+++++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 467777777778888888888887777654
No 289
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.30 E-value=2.1 Score=33.87 Aligned_cols=182 Identities=13% Similarity=0.021 Sum_probs=105.8
Q ss_pred HcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHH
Q 012804 264 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 343 (456)
Q Consensus 264 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 343 (456)
..|-+.-|+--|.+.+...+. -+.+||.+.--+...|+++.|.+.|+...+.+..-+-...+.-+ ++.-.|+++-|.+
T Consensus 77 SlGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~ 154 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQD 154 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHH
Confidence 345555555555555554322 46778888888889999999999999988764332222222222 3345688888877
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHH--HhCCCHHHHHHHH-HHhccCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 012804 344 HLEYMNKIGFDSNLEAYNCIVDRL--GKDGKIDHAINVF-ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 420 (456)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 420 (456)
-+...-..+ +.|+ |..+ ..| ...-++.+|..-+ ++....+..-|...+..|.- |+..+ ..+++++..- -.
T Consensus 155 d~~~fYQ~D-~~DP--fR~L-WLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a~-a~ 227 (297)
T COG4785 155 DLLAFYQDD-PNDP--FRSL-WLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKISE-ETLMERLKAD-AT 227 (297)
T ss_pred HHHHHHhcC-CCCh--HHHH-HHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhccH-HHHHHHHHhh-cc
Confidence 776655543 2222 2222 122 2344566665544 45555565666554443332 22211 2333443322 11
Q ss_pred CC-------HHhHHHHHHHHHccCChHHHHHHHHHHHhccc
Q 012804 421 IL-------KSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 454 (456)
Q Consensus 421 ~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 454 (456)
.+ ..|+-.++.-+...|+.++|..+|+-....++
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 11 34677788889999999999999988766554
No 290
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.28 E-value=5.7 Score=38.73 Aligned_cols=188 Identities=12% Similarity=0.061 Sum_probs=103.2
Q ss_pred HHHcCChHHHHHHHHHHHHCCCccCH-------HHHHHHH-HHHHhcCCHHHHHHHHHHHHHc----CCCcCHHhHHHHH
Q 012804 262 FVKIGRLKEATDYMEQMVTDGVQLDI-------VSYNTLI-NLYCKEGKLEAAYLLLDEMEKQ----GFECDKYTHTILI 329 (456)
Q Consensus 262 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 329 (456)
.....++++|..++.++...-..|+. ..++.+- ......|++++|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567888999888887765222221 1233221 2234578889998888877653 1233455666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHH--HHHhCCC--HHHHHHHHHHhccC-----C-----hhhHH
Q 012804 330 DGLCKAGNIKGARLHLEYMNKIGFDSN---LEAYNCIVD--RLGKDGK--IDHAINVFESMEVK-----D-----SFTYS 392 (456)
Q Consensus 330 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~--~~~~~g~--~~~a~~~~~~~~~~-----~-----~~~~~ 392 (456)
.+..-.|++++|..+.+...+..-.-+ ...|..+.. .+...|. ..+....|...... . ..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777788999999888887655421222 233333322 4556673 23333333333222 1 12344
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHc----CCCCCHHhHH--HHHHHHHccCChHHHHHHHHHHHhc
Q 012804 393 SMVHNLCKAKRLPSASKLLLSCLKS----GVRILKSAQK--AVVDGLRHSGCRREAKKIQSKIRMA 452 (456)
Q Consensus 393 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~ 452 (456)
.+..++.+ ++.+..-.....+. ...|-..... .++.+....|+.++|...+.++...
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 44455544 33333333333222 2222222222 5667888899999999888887653
No 291
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.28 E-value=0.058 Score=28.40 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=17.7
Q ss_pred HHHHHhcCCCCCHHhHHHHHHHHHccCChhHHH
Q 012804 30 IIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGY 62 (456)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 62 (456)
|+++++..|. +..+|+.+..++...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 3444444432 5556666666666666666554
No 292
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.22 E-value=2 Score=33.53 Aligned_cols=98 Identities=9% Similarity=-0.032 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhHHHH--
Q 012804 78 VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPD--VWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTP-CTATFNI-- 152 (456)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~-- 152 (456)
..+..+...|.+.|+.+.|.+.|.++.+....+. ...+..+++.....+++..+...+.+....--.+ |...-+-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4677889999999999999999999988754433 4456788899999999999998888766432111 1222111
Q ss_pred H--HHHHHhcCChHHHHHHHHHHHh
Q 012804 153 M--LNGLCKNRYTDNALRMFRGLQK 175 (456)
Q Consensus 153 l--~~~~~~~~~~~~a~~~~~~~~~ 175 (456)
. .-.+...+++..|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 1 1223457889888888766543
No 293
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.17 E-value=0.47 Score=42.08 Aligned_cols=124 Identities=14% Similarity=0.091 Sum_probs=74.7
Q ss_pred HHhcCCHHHHHH-HHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 012804 297 YCKEGKLEAAYL-LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 375 (456)
Q Consensus 297 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 375 (456)
-...|+.-.|-+ ++..+....-.|+...+...+ +...|+++.+...+...... +.....+...++....+.|++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 344566655544 444444443344444444333 45678888887777665543 33445667777777778888888
Q ss_pred HHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH
Q 012804 376 AINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 423 (456)
Q Consensus 376 a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 423 (456)
|...-.-+... +++.........-..|-++++.-.+++....+.+.+.
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence 88877776655 4444444333444567777888888877766544333
No 294
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.15 E-value=0.14 Score=26.70 Aligned_cols=30 Identities=7% Similarity=0.012 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 012804 389 FTYSSMVHNLCKAKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 418 (456)
..|..++..+...|++++|++.++++++..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 456777888888888888888888887653
No 295
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.00 E-value=2.3 Score=33.12 Aligned_cols=85 Identities=14% Similarity=0.051 Sum_probs=42.6
Q ss_pred HHHhCCCHHHHHHHHHHhccC------ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCCh
Q 012804 366 RLGKDGKIDHAINVFESMEVK------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 439 (456)
Q Consensus 366 ~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 439 (456)
.+..+|++++|...++..... ...+-..|.+.....|.+++|+..++...+.+. .+.....-++++...|+.
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k 175 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCch
Confidence 455566666666666544432 112223344555556666666666554432221 222233344556666666
Q ss_pred HHHHHHHHHHHhc
Q 012804 440 REAKKIQSKIRMA 452 (456)
Q Consensus 440 ~~A~~~~~~~~~~ 452 (456)
++|+.-|++..+.
T Consensus 176 ~~Ar~ay~kAl~~ 188 (207)
T COG2976 176 QEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHHc
Confidence 6666666555544
No 296
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.84 E-value=2.1 Score=32.22 Aligned_cols=52 Identities=15% Similarity=-0.037 Sum_probs=27.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcCHHhHH-HHHHHHHhcCCHHHHHHHHHHHHhC
Q 012804 298 CKEGKLEAAYLLLDEMEKQGFECDKYTHT-ILIDGLCKAGNIKGARLHLEYMNKI 351 (456)
Q Consensus 298 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (456)
.+.++.+.+..++..+.-. .|...... .-...+...|++.+|..+|+.+...
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3456666666666666553 23222211 1223345666666666666665544
No 297
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.83 E-value=5 Score=36.39 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCc-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012804 256 CTVIAAFVKIGRLKEATDYMEQMVTDGVQ-LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 316 (456)
Q Consensus 256 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 316 (456)
..+..++-+.|+.++|.+.++++.+.... -...+...|+.++...+.+.++..++.+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 34555666778888888888877765322 13345566777778888888888777776543
No 298
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.81 E-value=0.0019 Score=48.55 Aligned_cols=53 Identities=11% Similarity=0.191 Sum_probs=24.8
Q ss_pred HHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHH
Q 012804 14 VCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILN 66 (456)
Q Consensus 14 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 66 (456)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444445555555555555544433344455555555555544444444443
No 299
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.21 E-value=3 Score=31.91 Aligned_cols=30 Identities=20% Similarity=0.511 Sum_probs=14.4
Q ss_pred HHHHHHHCCCccCHHHHHHHHHHHHhcCCH
Q 012804 274 YMEQMVTDGVQLDIVSYNTLINLYCKEGKL 303 (456)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 303 (456)
+++.+...+++|+...+..++..+.+.|++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 333334444555555555555555555543
No 300
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.20 E-value=0.25 Score=25.75 Aligned_cols=26 Identities=12% Similarity=0.082 Sum_probs=12.8
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHH
Q 012804 391 YSSMVHNLCKAKRLPSASKLLLSCLK 416 (456)
Q Consensus 391 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 416 (456)
|..+...|...|++++|.+.|++.++
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444445555555555555555443
No 301
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.05 E-value=11 Score=38.15 Aligned_cols=105 Identities=18% Similarity=0.119 Sum_probs=56.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHH
Q 012804 295 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 374 (456)
Q Consensus 295 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 374 (456)
..+...+.+++|.-.|+..-+ ....+.+|..+|+|.+|..+..++..-. .--..+-..|+.-+...++.-
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcccch
Confidence 333445666666655554422 1234556677777777777766654310 001122256666777777777
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHccCChhHHHHHHHH
Q 012804 375 HAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLS 413 (456)
Q Consensus 375 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 413 (456)
+|-++..+....... .+..|++...+++|+++...
T Consensus 1017 eAa~il~e~~sd~~~----av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1017 EAAKILLEYLSDPEE----AVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred hHHHHHHHHhcCHHH----HHHHHhhHhHHHHHHHHHHh
Confidence 777777766654222 22334444555555554443
No 302
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.90 E-value=5.5 Score=34.13 Aligned_cols=47 Identities=21% Similarity=0.279 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHH--cC----CHHHHHHHHHHHhhC
Q 012804 165 NALRMFRGLQKHGFVPELVTYNILIKGLCK--AG----RLRTARWILKELGDS 211 (456)
Q Consensus 165 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~ 211 (456)
+.+.+++.+.+.|+.-+..+|-+....... .. ....+..+|+.|.+.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 344555666666665554444332222221 11 234455666666554
No 303
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.75 E-value=1.1 Score=37.51 Aligned_cols=102 Identities=13% Similarity=0.123 Sum_probs=63.6
Q ss_pred CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcC---CCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHH
Q 012804 213 HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG---YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 289 (456)
Q Consensus 213 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 289 (456)
......+...++..-....+++.+...+-.+.... ..++ .+...+++.+. .-++++++.++..=+..|+.||..+
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-ccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence 33444555555555555666777777666665431 1111 12223333333 3456677777777777788888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012804 290 YNTLINLYCKEGKLEAAYLLLDEMEKQ 316 (456)
Q Consensus 290 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 316 (456)
++.++..+.+.+++.+|..+...|...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888888888777777654
No 304
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.75 E-value=3.5 Score=31.52 Aligned_cols=134 Identities=13% Similarity=0.167 Sum_probs=62.8
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 012804 98 DLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG 177 (456)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 177 (456)
++++.+.+.+++|+...+..++..+.+.|.+....++ ...++-+|.......+-.+.. ....+.++--.|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 4455555566666666677777777776665544433 333334444444333322222 222222222222221
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 012804 178 FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR 245 (456)
Q Consensus 178 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 245 (456)
-...+..++..+...|++-+|.++.+..... +......++++..+.+|...-..+++-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0012344556666677777776666554221 111223345555555555444444444443
No 305
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.72 E-value=0.6 Score=31.31 Aligned_cols=45 Identities=13% Similarity=0.003 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 012804 406 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 450 (456)
Q Consensus 406 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 450 (456)
++.+-+..+...++-|++.+..+.+.||++.+++.-|.++++-++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455556666666667777777777777777777777777777655
No 306
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.70 E-value=0.21 Score=25.76 Aligned_cols=25 Identities=12% Similarity=-0.016 Sum_probs=11.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcc
Q 012804 429 VVDGLRHSGCRREAKKIQSKIRMAK 453 (456)
Q Consensus 429 l~~~~~~~g~~~~A~~~~~~~~~~~ 453 (456)
++.++.+.|++++|.+.|+++...-
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHC
Confidence 3444444444444444444444443
No 307
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.48 E-value=1.4 Score=34.55 Aligned_cols=76 Identities=13% Similarity=0.077 Sum_probs=54.8
Q ss_pred HHhCCCHHHHHHHHHHhccC----ChhhHHHHHHHHHccCChhHHHHHHHHHHHc---CCCCCHHhHHHHHHHHHccCCh
Q 012804 367 LGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS---GVRILKSAQKAVVDGLRHSGCR 439 (456)
Q Consensus 367 ~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~ 439 (456)
+.+.|+ +.|.+.|-.+... ++.....++..|. ..+.++++.++.++++. +-.+|+..+.+|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 455555 4566666665554 5555555555444 67889999999988876 3367899999999999999999
Q ss_pred HHHHH
Q 012804 440 REAKK 444 (456)
Q Consensus 440 ~~A~~ 444 (456)
+.|.-
T Consensus 195 e~AYi 199 (203)
T PF11207_consen 195 EQAYI 199 (203)
T ss_pred hhhhh
Confidence 88853
No 308
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.28 E-value=3.6 Score=30.52 Aligned_cols=52 Identities=15% Similarity=-0.043 Sum_probs=31.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC-cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012804 298 CKEGKLEAAYLLLDEMEKQGFE-CDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 351 (456)
Q Consensus 298 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (456)
...++++++..+++.|.-..+. +...++.. ..+...|++.+|..+|+.+.+.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhcc
Confidence 3467777777777777653211 12223333 3356677777777777777665
No 309
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.25 E-value=1.6 Score=29.40 Aligned_cols=45 Identities=7% Similarity=0.079 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012804 270 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 314 (456)
Q Consensus 270 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 314 (456)
++.+-++.+...+..|++.+..+.+++|.+.+++..|.++++..+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444443
No 310
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.22 E-value=11 Score=35.93 Aligned_cols=275 Identities=12% Similarity=0.052 Sum_probs=155.9
Q ss_pred hhHHHHHHHHHHhCCCCCChhHHHHHH--HH-HHhcCChHHHHHHHHHHHh-------CCCCCcHHHHHHHHHHHHHcC-
Q 012804 128 PDEANRVFQDMICGDLTPCTATFNIML--NG-LCKNRYTDNALRMFRGLQK-------HGFVPELVTYNILIKGLCKAG- 196 (456)
Q Consensus 128 ~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~- 196 (456)
...+.+.++...+.| ..........+ .+ +....+.+.|+.+|+...+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g-~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG-HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhc-chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 467888888887766 22222222222 22 4456789999999998876 44 2234555666666633
Q ss_pred ----CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHH----HcCC
Q 012804 197 ----RLRTARWILKELGDSGHAPNAITYTTIMKCCFR-NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV----KIGR 267 (456)
Q Consensus 197 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~ 267 (456)
+.+.|..++...-..|.+ +.......+..... ..+...|.++|....+.|..+ .+-.+..+|. ...+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~---A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL---AIYRLALCYELGLGVERN 379 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH---HHHHHHHHHHhCCCcCCC
Confidence 677899999888776643 44333322222222 246789999999999888332 2222322222 2247
Q ss_pred hHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHH-HHH---Hh----cCCHH
Q 012804 268 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI-DGL---CK----AGNIK 339 (456)
Q Consensus 268 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~----~~~~~ 339 (456)
.+.|..++.+..+.|. |....-...+..+.. ++++.+.-.+..+.+.+.+. ..+-...+ ... .. ..+.+
T Consensus 380 ~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~-~q~~a~~l~~~~~~~~~~~~~~~~~~ 456 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV-AQSNAAYLLDQSEEDLFSRGVISTLE 456 (552)
T ss_pred HHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH-HhhHHHHHHHhccccccccccccchh
Confidence 8889999999988873 232222223333444 77777777777777665442 22222111 111 11 12445
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHhccCChhhHHHHHHHHHc----cCChhHHHHHH
Q 012804 340 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKD----GKIDHAINVFESMEVKDSFTYSSMVHNLCK----AKRLPSASKLL 411 (456)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~ 411 (456)
.+...+.+....| +......+.+.|... .+++.|...+.............+...+-. .. +..|.+++
T Consensus 457 ~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~~~~~~nlg~~~e~g~g~~~-~~~a~~~~ 532 (552)
T KOG1550|consen 457 RAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQGAQALFNLGYMHEHGEGIKV-LHLAKRYY 532 (552)
T ss_pred HHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhhhHHHhhhhhHHhcCcCcch-hHHHHHHH
Confidence 6666666666554 555666666655443 347777777776655543333333333321 22 56777777
Q ss_pred HHHHHc
Q 012804 412 LSCLKS 417 (456)
Q Consensus 412 ~~~~~~ 417 (456)
++..+.
T Consensus 533 ~~~~~~ 538 (552)
T KOG1550|consen 533 DQASEE 538 (552)
T ss_pred HHHHhc
Confidence 777654
No 311
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.19 E-value=5.3 Score=32.23 Aligned_cols=17 Identities=18% Similarity=0.171 Sum_probs=9.8
Q ss_pred HhcCchhHHHHHHHHHH
Q 012804 228 FRNRKYKLGLEILSAMK 244 (456)
Q Consensus 228 ~~~~~~~~a~~~~~~~~ 244 (456)
.-.+++++|.+++.+..
T Consensus 25 gg~~k~eeAadl~~~Aa 41 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERAA 41 (288)
T ss_pred CCCcchHHHHHHHHHHH
Confidence 34456666666665543
No 312
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.14 E-value=3.1 Score=32.03 Aligned_cols=28 Identities=4% Similarity=0.044 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 012804 404 LPSASKLLLSCLKSGVRILKSAQKAVVDGL 433 (456)
Q Consensus 404 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 433 (456)
+++|.+.|+++.+. .|+...|+.-+...
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 34455555555543 55666666555444
No 313
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.07 E-value=2.7 Score=28.66 Aligned_cols=42 Identities=10% Similarity=-0.056 Sum_probs=17.7
Q ss_pred HHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012804 308 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 349 (456)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 349 (456)
+-++.+....+.|++......+++|.+.+++..|.++++-++
T Consensus 31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444
No 314
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.06 E-value=3.8 Score=30.37 Aligned_cols=53 Identities=11% Similarity=-0.131 Sum_probs=30.2
Q ss_pred HhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 012804 18 CKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREA 71 (456)
Q Consensus 18 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 71 (456)
...++++++..+++.+.-..|+ ....-..-...+...|+|++|+.+|+.+.+.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 4467777777777766554332 1222222233445667777777777777655
No 315
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.97 E-value=13 Score=36.13 Aligned_cols=319 Identities=10% Similarity=0.006 Sum_probs=144.2
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh--cCChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 012804 78 VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQ--LGKPDEANRVFQDMICGDLTPCTATFNIMLN 155 (456)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 155 (456)
..|..... ..+.|++..+.++...+... + ...|......... ...+++....+++-. +.+.....-...+.
T Consensus 35 ~~f~~A~~-a~~~g~~~~~~~~~~~l~d~--p--L~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~ 107 (644)
T PRK11619 35 QRYQQIKQ-AWDNRQMDVVEQLMPTLKDY--P--LYPYLEYRQLTQDLMNQPAVQVTNFIRANP--TLPPARSLQSRFVN 107 (644)
T ss_pred HHHHHHHH-HHHCCCHHHHHHHHHhccCC--C--cHhHHHHHHHHhccccCCHHHHHHHHHHCC--CCchHHHHHHHHHH
Confidence 33444333 45677888887777766432 1 1222222222222 223454444444322 21223333344455
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhH
Q 012804 156 GLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL 235 (456)
Q Consensus 156 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 235 (456)
.+.+.+++...+..+. . .+.+...-.....+....|+.++|......+=..|.. .+.....++..+.+.|....
T Consensus 108 ~La~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~ 181 (644)
T PRK11619 108 ELARREDWRGLLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDP 181 (644)
T ss_pred HHHHccCHHHHHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCH
Confidence 6667777777776331 1 2345555566777788888887777666665444433 45566666766665555443
Q ss_pred HHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHC---------CCccCHHHHHHHHHHHH--hcCCHH
Q 012804 236 GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD---------GVQLDIVSYNTLINLYC--KEGKLE 304 (456)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~l~~~~~--~~~~~~ 304 (456)
.. ++.++...-...+......+...+. .+.....+.+..+... .+.++...-..++.++. ...+.+
T Consensus 182 ~d-~w~R~~~al~~~~~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~ 258 (644)
T PRK11619 182 LA-YLERIRLAMKAGNTGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAE 258 (644)
T ss_pred HH-HHHHHHHHHHCCCHHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHH
Confidence 22 2222221111112222222222220 1111111111111110 11122211111111111 234556
Q ss_pred HHHHHHHHHHHcC-CCcCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 012804 305 AAYLLLDEMEKQG-FECDK--YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 381 (456)
Q Consensus 305 ~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 381 (456)
.|..++....... ..+.. .+...+.......+...++...+...... ..+......-+..-.+.++++.+...+.
T Consensus 259 ~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~~~~i~ 336 (644)
T PRK11619 259 NARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGLNTWLA 336 (644)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHHHHHHH
Confidence 6666666654322 21111 12233333333322244555555543322 1233334444444456677777666666
Q ss_pred HhccC---ChhhHHHHHHHHHccCChhHHHHHHHHH
Q 012804 382 SMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSC 414 (456)
Q Consensus 382 ~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 414 (456)
.+... ......-+++++...|+.++|...|+++
T Consensus 337 ~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 337 RLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred hcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 65443 3333444566656667777777777766
No 316
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.96 E-value=8.4 Score=34.11 Aligned_cols=66 Identities=15% Similarity=0.034 Sum_probs=51.2
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012804 285 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC---DKYTHTILIDGLCKAGNIKGARLHLEYMNK 350 (456)
Q Consensus 285 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 350 (456)
....+|..++..+.+.|.++.|...+..+...+... .+.....-++..-..|+..+|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356678888999999999999999999988754222 344555556677788999999999988876
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.95 E-value=0.47 Score=26.11 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHh
Q 012804 8 RLLNICVCTFCKANRLEKAEAIIIDGIR 35 (456)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 35 (456)
.+++.+...|...|++++|+.+++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566666667777777777777666553
No 318
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.79 E-value=1.9 Score=29.40 Aligned_cols=60 Identities=7% Similarity=0.066 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHH
Q 012804 270 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 330 (456)
Q Consensus 270 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 330 (456)
+..+-++.+...+..|++.+..+.+++|.+.+++..|.++|+.++.+ ..+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 45566666666677778888888888888888888888888777654 2222225555553
No 319
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.70 E-value=13 Score=35.85 Aligned_cols=87 Identities=11% Similarity=0.092 Sum_probs=32.7
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcC-CCcChhhHHHHHHHHHHc---
Q 012804 190 KGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-YTFDGFGYCTVIAAFVKI--- 265 (456)
Q Consensus 190 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~--- 265 (456)
..+.-.|+++.|.+.+-. ......+.+++...+..|.-.+-.+... ..+.... -.+.+..+..++..|.+.
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 445567778877777765 1122234444444333322111111111 2222111 011124456666666653
Q ss_pred CChHHHHHHHHHHHHC
Q 012804 266 GRLKEATDYMEQMVTD 281 (456)
Q Consensus 266 ~~~~~a~~~~~~~~~~ 281 (456)
.+..+|.+++--+...
T Consensus 341 td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 341 TDPREALQYLYLICLF 356 (613)
T ss_dssp T-HHHHHHHHHGGGGS
T ss_pred cCHHHHHHHHHHHHHc
Confidence 4566666666555443
No 320
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.60 E-value=9.2 Score=35.62 Aligned_cols=152 Identities=13% Similarity=0.033 Sum_probs=95.6
Q ss_pred HHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHH
Q 012804 17 FCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCS 96 (456)
Q Consensus 17 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 96 (456)
+.-.|+++.|-.++... | -...+.+...+.++|-.++|+++- +|+.. -.....+.|+++.|
T Consensus 596 ~vmrrd~~~a~~vLp~I------~-k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA 656 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTI------P-KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIA 656 (794)
T ss_pred HhhhccccccccccccC------c-hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHH
Confidence 34456777766644332 1 234566777777777777776542 23222 12345567888888
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 012804 97 LDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH 176 (456)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 176 (456)
.++..+.. +..-|..|.++....|++..|.+.|.+... |..|+-.+...|+-+....+-....+.
T Consensus 657 ~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 657 FDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred HHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 77765532 566688888888888888888888877653 345666666777766666665556555
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012804 177 GFVPELVTYNILIKGLCKAGRLRTARWILKEL 208 (456)
Q Consensus 177 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 208 (456)
|.. | ...-+|...|+++++.+++..-
T Consensus 722 g~~-N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 722 GKN-N-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ccc-c-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 432 2 2334566778888888777553
No 321
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.43 E-value=6.4 Score=35.54 Aligned_cols=45 Identities=4% Similarity=-0.192 Sum_probs=32.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 012804 390 TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 435 (456)
Q Consensus 390 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 435 (456)
......-.|...|++-.|.+.|.+.... +..++..|..+..+|..
T Consensus 337 ilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 337 ILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 3445566777888888888888877665 45577888888887765
No 322
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.91 E-value=4.2 Score=31.87 Aligned_cols=92 Identities=9% Similarity=0.090 Sum_probs=59.3
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCC-----HhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 012804 49 IDAYCQFVSFDAGYTILNRMREAGISPD-----VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLF 123 (456)
Q Consensus 49 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 123 (456)
.+-+.+.|++++|..-|......- ++. ...|..-..++.+.+.++.|++-..+.++.++. .......-..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHH
Confidence 344556788888887777777652 211 233555556777788888888877777775532 2333333455677
Q ss_pred hcCChhHHHHHHHHHHhCC
Q 012804 124 QLGKPDEANRVFQDMICGD 142 (456)
Q Consensus 124 ~~~~~~~a~~~~~~~~~~~ 142 (456)
+...+++|+.=|..+....
T Consensus 180 k~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhhHHHHHHHHHHHHHhC
Confidence 7788888888888887663
No 323
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.89 E-value=13 Score=34.06 Aligned_cols=96 Identities=16% Similarity=0.112 Sum_probs=43.4
Q ss_pred cChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHH
Q 012804 250 FDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 329 (456)
Q Consensus 250 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 329 (456)
.|.....+++..+.....+.-.+.+..+|+..| .+...+..++++|... ..+.-..+|+++.+..+. |...-..|+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 344444445555555445555555555555432 2344445555555554 334445555555544322 222223333
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 012804 330 DGLCKAGNIKGARLHLEYMNK 350 (456)
Q Consensus 330 ~~~~~~~~~~~a~~~~~~~~~ 350 (456)
..|.+ ++.+.+..+|.++..
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHH
Confidence 33322 444555555555443
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.82 E-value=0.61 Score=25.61 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHH
Q 012804 389 FTYSSMVHNLCKAKRLPSASKLLLSCLK 416 (456)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 416 (456)
.+++.++..|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455666666666666666666666643
No 325
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.79 E-value=8.3 Score=31.83 Aligned_cols=173 Identities=13% Similarity=0.078 Sum_probs=93.3
Q ss_pred CCCCChhHHHHHHHHH-HhcCChHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhh---CC--
Q 012804 142 DLTPCTATFNIMLNGL-CKNRYTDNALRMFRGLQKHGFVPE---LVTYNILIKGLCKAGRLRTARWILKELGD---SG-- 212 (456)
Q Consensus 142 ~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~-- 212 (456)
+..||+..=|..-.+- .+...+++|+.-|.+..+...... -.....++....+.+++++....+.++.. +.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3456655444332211 234578888888888877532222 23445677888888888888888887753 11
Q ss_pred CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHc-CCCcC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC-----C
Q 012804 213 HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYTFD----GFGYCTVIAAFVKIGRLKEATDYMEQMVTD-----G 282 (456)
Q Consensus 213 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~ 282 (456)
..-+..+.+.++.......+.+...++++.-.+. .-..+ -.+-..+...|...+.+....+++.++... |
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 1124455666666666566665555555543321 00011 112234555566666666666666666543 1
Q ss_pred Cc------cCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012804 283 VQ------LDIVSYNTLINLYCKEGKLEAAYLLLDEME 314 (456)
Q Consensus 283 ~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 314 (456)
-. .-...|..-|+.|....+-.+-..++++..
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 00 012345555566666666565566666544
No 326
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.73 E-value=11 Score=33.29 Aligned_cols=66 Identities=15% Similarity=0.047 Sum_probs=51.9
Q ss_pred cChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCcc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012804 250 FDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL---DIVSYNTLINLYCKEGKLEAAYLLLDEMEK 315 (456)
Q Consensus 250 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 315 (456)
....++..+...+.+.|.++.|...+..+...+... .+.....-++.....|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677788899999999999999999988753211 345555567778889999999999998887
No 327
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.15 E-value=0.86 Score=23.63 Aligned_cols=31 Identities=16% Similarity=-0.083 Sum_probs=23.3
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhcccC
Q 012804 425 AQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 455 (456)
Q Consensus 425 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 455 (456)
+|..++..+...|++++|...|++..+.++.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566777888888888888888887776654
No 328
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.79 E-value=1.1 Score=22.92 Aligned_cols=27 Identities=11% Similarity=-0.039 Sum_probs=18.2
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHhcC
Q 012804 11 NICVCTFCKANRLEKAEAIIIDGIRLG 37 (456)
Q Consensus 11 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 37 (456)
-.+..++.+.|++++|.+.|+++++..
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 345566667777777777777776654
No 329
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.76 E-value=0.24 Score=37.06 Aligned_cols=54 Identities=26% Similarity=0.348 Sum_probs=26.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012804 258 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 311 (456)
Q Consensus 258 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 311 (456)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444455555555555555544433445555555555555554444444443
No 330
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.70 E-value=0.52 Score=22.83 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=5.4
Q ss_pred HHHHccCChHHHHH
Q 012804 431 DGLRHSGCRREAKK 444 (456)
Q Consensus 431 ~~~~~~g~~~~A~~ 444 (456)
.++...|+.++|+.
T Consensus 9 ~~~~~~G~~~eA~~ 22 (26)
T PF07721_consen 9 RALLAQGDPDEAER 22 (26)
T ss_pred HHHHHcCCHHHHHH
Confidence 33333333333333
No 331
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.58 E-value=7.7 Score=30.62 Aligned_cols=79 Identities=9% Similarity=-0.078 Sum_probs=58.6
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCChhHHHHHHHHHHhcCCh
Q 012804 87 ATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICG---DLTPCTATFNIMLNGLCKNRYT 163 (456)
Q Consensus 87 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 163 (456)
+.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++.+++.+..+. +-.+|+..+..|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 455555 567777777777765546666666665555 67889999999887764 2367889999999999999999
Q ss_pred HHHH
Q 012804 164 DNAL 167 (456)
Q Consensus 164 ~~a~ 167 (456)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8875
No 332
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.46 E-value=3.9 Score=32.54 Aligned_cols=76 Identities=17% Similarity=0.195 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCC--CCCCHhHHHHHHHH
Q 012804 10 LNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAG--ISPDVVTYNSLIAG 86 (456)
Q Consensus 10 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 86 (456)
.+..++.+.+.++..+++...+.-++..+. |...-..++..++-.|+|++|..-++..-+.. ..+-...|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 445567778888888888888888877643 66677778888888888888877666665542 12334556666654
No 333
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.37 E-value=0.65 Score=22.50 Aligned_cols=23 Identities=9% Similarity=0.002 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHH
Q 012804 9 LLNICVCTFCKANRLEKAEAIII 31 (456)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~ 31 (456)
....+...+...|++++|+.+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34455666666677777666654
No 334
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.33 E-value=1.4 Score=37.50 Aligned_cols=91 Identities=13% Similarity=-0.143 Sum_probs=68.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCC
Q 012804 327 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKR 403 (456)
Q Consensus 327 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 403 (456)
.-...|.+.|.+++|+..+....... +-|...+..-..+|.+..++..|..-...+... -...|..-+.+-...|.
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 34566889999999999999987752 447788888888999999999888877777665 23455555555566778
Q ss_pred hhHHHHHHHHHHHcC
Q 012804 404 LPSASKLLLSCLKSG 418 (456)
Q Consensus 404 ~~~A~~~~~~~~~~~ 418 (456)
..+|.+-++..++..
T Consensus 181 ~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 181 NMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHhHHHHHhhC
Confidence 888888888888653
No 335
>PRK09687 putative lyase; Provisional
Probab=89.28 E-value=13 Score=31.71 Aligned_cols=136 Identities=13% Similarity=-0.048 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012804 286 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG-NIKGARLHLEYMNKIGFDSNLEAYNCIV 364 (456)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 364 (456)
+..+-...+.++.+.++. .+...+-.+.+. ++..+-...+.++...+ +.+.+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 444555566666666653 455555444442 34445555555555442 13345555555543 34556666666
Q ss_pred HHHHhCCCHHHHHHHHHHhccCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 012804 365 DRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 433 (456)
Q Consensus 365 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 433 (456)
.++.+.|+. .|...+-...+.+. .....+.++...|.. +|+..+.++.+. .||..+......+|
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~~-~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKGT-VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCCc-hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 667776663 44444444444322 334566777777774 677777777654 33666555555554
No 336
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.96 E-value=12 Score=34.98 Aligned_cols=99 Identities=16% Similarity=0.174 Sum_probs=52.0
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHH
Q 012804 193 CKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 272 (456)
Q Consensus 193 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 272 (456)
.+.|+++.|.++..+.. +..-|..|.++....+++..|.+.+.+.... ..|+-.+...|+.+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHH
Confidence 45566666655544332 4455666666666666666666666554432 23444555555555444
Q ss_pred HHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012804 273 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 312 (456)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 312 (456)
.+-....+.|.. |....+|...|+++++.+++..
T Consensus 713 ~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 444444443321 2233345556666666665543
No 337
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.89 E-value=12 Score=31.83 Aligned_cols=127 Identities=15% Similarity=0.198 Sum_probs=84.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh----------CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC---CCCCHHH
Q 012804 153 MLNGLCKNRYTDNALRMFRGLQK----------HGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG---HAPNAIT 219 (456)
Q Consensus 153 l~~~~~~~~~~~~a~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~ 219 (456)
+..+|.....|+.-....-.+-. .|.+.+..+...++..-....+++.+...+-+++.+. ..|+...
T Consensus 25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~ 104 (418)
T KOG4570|consen 25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI 104 (418)
T ss_pred hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH
Confidence 44566666666554433323222 2344455555666665566778889988888877542 1122222
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012804 220 YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 281 (456)
Q Consensus 220 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 281 (456)
+ ..++. +-.-++++++.++..=++-|+-||..+++.++..+.+.+++.+|..+.-.|...
T Consensus 105 ~-~~irl-llky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 105 H-TWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred H-HHHHH-HHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 2 22332 234567788888888888999999999999999999999999999888777654
No 338
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.57 E-value=25 Score=34.13 Aligned_cols=89 Identities=13% Similarity=0.041 Sum_probs=49.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCC-CcC-----HHhHHHHHH--HHHhcCCHHHHHHHHH--------HHHhCCCCCCHHHHH
Q 012804 298 CKEGKLEAAYLLLDEMEKQGF-ECD-----KYTHTILID--GLCKAGNIKGARLHLE--------YMNKIGFDSNLEAYN 361 (456)
Q Consensus 298 ~~~~~~~~a~~~~~~~~~~~~-~~~-----~~~~~~l~~--~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~ 361 (456)
+-.+++..|...+..+..... .|+ ...+..++. .+-..|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 347899999999998875321 111 222333333 3456799999999998 444444344444443
Q ss_pred HH--HHHHHhCCC--HHH--HHHHHHHhccC
Q 012804 362 CI--VDRLGKDGK--IDH--AINVFESMEVK 386 (456)
Q Consensus 362 ~l--~~~~~~~g~--~~~--a~~~~~~~~~~ 386 (456)
.+ +..+...+. .++ +.++++.+...
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~ 482 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPL 482 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCcc
Confidence 32 122222232 223 77788776654
No 339
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=88.47 E-value=12 Score=30.41 Aligned_cols=81 Identities=15% Similarity=-0.033 Sum_probs=38.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCCHHHH
Q 012804 299 KEGKLEAAYLLLDEMEKQGFECDKY-THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL-EAYNCIVDRLGKDGKIDHA 376 (456)
Q Consensus 299 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a 376 (456)
....++.|...+.+.+.. .|+.. -|..-+..+.+..+++.+..--++.++. .||. .....+..+......+++|
T Consensus 22 ~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred chhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHH
Confidence 334455566555554443 33332 2333444455555665555555555443 3332 2233334444555555666
Q ss_pred HHHHHHh
Q 012804 377 INVFESM 383 (456)
Q Consensus 377 ~~~~~~~ 383 (456)
+..+.++
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 6555554
No 340
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.35 E-value=47 Score=37.03 Aligned_cols=318 Identities=12% Similarity=0.049 Sum_probs=158.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Q 012804 117 SLMHCLFQLGKPDEANRVFQDMICGDL--TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK 194 (456)
Q Consensus 117 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 194 (456)
.+..+-.+++.+.+|...++.-..... ......+..+...|..-+++|....+...-.. +...+ .-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHh
Confidence 455566778889999988887311110 11223344444588899999888877764111 22222 33445678
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhh-HHHHHHHHHHcCChHHHHH
Q 012804 195 AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG-YCTVIAAFVKIGRLKEATD 273 (456)
Q Consensus 195 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~ 273 (456)
.|+++.|..-|+.+.+.+.. ...+++.++......+.++......+-..... .+.... ++.-..+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 89999999999999876432 46667777777777777777776555554432 222222 2222333345666766666
Q ss_pred HHHHHHHCCCccCHHHHHH--HHHHHHhc--CCHHHHHHHHHHHHHcCCCc---------CHHhHHHHHHHHHhcCCHHH
Q 012804 274 YMEQMVTDGVQLDIVSYNT--LINLYCKE--GKLEAAYLLLDEMEKQGFEC---------DKYTHTILIDGLCKAGNIKG 340 (456)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~--~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~ 340 (456)
.+. .. +..+|.. ++....+. .+.-.-.+.++.+.+.-+.| -...|..++....-.. .+.
T Consensus 1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~~ 1611 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LEN 1611 (2382)
T ss_pred hhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HHH
Confidence 554 11 1122221 22222222 12111112222222210110 0123333333222111 011
Q ss_pred HHHHHHHHH-hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH----h--c----cCChhhHHHHHHHHHccCChhHHHH
Q 012804 341 ARLHLEYMN-KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES----M--E----VKDSFTYSSMVHNLCKAKRLPSASK 409 (456)
Q Consensus 341 a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~----~--~----~~~~~~~~~l~~~~~~~~~~~~A~~ 409 (456)
-.+.+.... ......+...|..-+..-....+..+-+--+++ . . ..-...|...++.....|+++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 111111100 000011111222222111111111111111111 1 1 1145678888888888888888888
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhcc
Q 012804 410 LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 453 (456)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 453 (456)
.+-.+.+.+ -+..+...+.-++..|+...|..++++....+
T Consensus 1692 all~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1692 ALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 877776654 33445556677888888888888888877543
No 341
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=88.21 E-value=20 Score=32.69 Aligned_cols=89 Identities=11% Similarity=0.151 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHH
Q 012804 326 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL---GKDGKIDHAINVFESMEVK---DSFTYSSMVHNLC 399 (456)
Q Consensus 326 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~ 399 (456)
+.++.-+.+.|-+++|...+..+.... +|+...+..++..- ..+| ...++..++.+... ++..|......-.
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~ 541 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEEL 541 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhc
Confidence 345566667777777888777777653 56666666666532 2233 56666666666554 6666666666556
Q ss_pred ccCChhHHHHHHHHHHH
Q 012804 400 KAKRLPSASKLLLSCLK 416 (456)
Q Consensus 400 ~~~~~~~A~~~~~~~~~ 416 (456)
..|+.+.+-.++.++.+
T Consensus 542 ~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 542 PLGRPENCGQIYWRAMK 558 (568)
T ss_pred cCCCcccccHHHHHHHH
Confidence 66776666666666554
No 342
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.64 E-value=2.3 Score=39.06 Aligned_cols=99 Identities=13% Similarity=0.022 Sum_probs=70.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHH
Q 012804 332 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSAS 408 (456)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~ 408 (456)
+...|+...|...+..+..............|.....+.|-..+|-.++.+.... .+.++..+++++.-..+.++|+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 3456888888888887765422222334556677777888888888888776554 6677788888899899999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHH
Q 012804 409 KLLLSCLKSGVRILKSAQKAVVD 431 (456)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~l~~ 431 (456)
+.|+++.+.... ++++-+.+..
T Consensus 697 ~~~~~a~~~~~~-~~~~~~~l~~ 718 (886)
T KOG4507|consen 697 EAFRQALKLTTK-CPECENSLKL 718 (886)
T ss_pred HHHHHHHhcCCC-ChhhHHHHHH
Confidence 999999877544 5665555544
No 343
>PRK09687 putative lyase; Provisional
Probab=87.50 E-value=17 Score=30.98 Aligned_cols=235 Identities=10% Similarity=-0.049 Sum_probs=139.0
Q ss_pred CCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCCh----hHHHHHHHHHHHCCCCCCHHh
Q 012804 39 LPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLL----SCSLDLLDEMLEMGIPPDVWS 114 (456)
Q Consensus 39 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 114 (456)
.++.......+.++...|.. .+...+..+... +|...-...+.++...|+. .++...+..+.... ++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D--~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALED--KSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC--CCHHH
Confidence 35666677777777777653 344444444442 4666666667777777763 45777777664432 55555
Q ss_pred HHHHHHHHHhcCCh-----hHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 012804 115 YNSLMHCLFQLGKP-----DEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILI 189 (456)
Q Consensus 115 ~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 189 (456)
-...+.++...+.. ..+...+..... .++..+-...+.++.+.++ ..++..+-.+.+. ++...-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 55566665555421 233444433332 3355666667777777776 4566666666553 3555555556
Q ss_pred HHHHHcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCCh
Q 012804 190 KGLCKAG-RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 268 (456)
Q Consensus 190 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 268 (456)
.++.+.+ ....+...+..+.. .++..+-...+.++.+.++. .+...+-...+.+ + .....+.++...|+.
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 6666543 23456666666554 35667777777788887774 4555555555443 1 234677788888885
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHHHH
Q 012804 269 KEATDYMEQMVTDGVQLDIVSYNTLINLYC 298 (456)
Q Consensus 269 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 298 (456)
+|...+..+.+. .||..+-...+.++.
T Consensus 252 -~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 -TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred -hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 688888887764 346666666565553
No 344
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=87.10 E-value=6.7 Score=31.73 Aligned_cols=24 Identities=25% Similarity=0.133 Sum_probs=12.7
Q ss_pred HHHHHHHccCChHHHHHHHHHHHh
Q 012804 428 AVVDGLRHSGCRREAKKIQSKIRM 451 (456)
Q Consensus 428 ~l~~~~~~~g~~~~A~~~~~~~~~ 451 (456)
.++....+.|+.++|.++|.++..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHc
Confidence 344455555555555555555544
No 345
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.97 E-value=1.7 Score=24.42 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=18.5
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcC
Q 012804 393 SMVHNLCKAKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 393 ~l~~~~~~~~~~~~A~~~~~~~~~~~ 418 (456)
.+..+|...|+.+.|.+++++.+..|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46677777777777777777777543
No 346
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.88 E-value=2.6 Score=35.92 Aligned_cols=91 Identities=18% Similarity=0.018 Sum_probs=62.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 012804 293 LINLYCKEGKLEAAYLLLDEMEKQGFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 371 (456)
Q Consensus 293 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 371 (456)
-..-|.++|.+++|+..|...... .| +..++..-..+|.+...+..|+.-...++..+ ..-...|+.-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 345799999999999999988775 34 78888888889999999988887777766542 111223333333333445
Q ss_pred CHHHHHHHHHHhccC
Q 012804 372 KIDHAINVFESMEVK 386 (456)
Q Consensus 372 ~~~~a~~~~~~~~~~ 386 (456)
...+|.+-++.+...
T Consensus 180 ~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 180 NNMEAKKDCETVLAL 194 (536)
T ss_pred hHHHHHHhHHHHHhh
Confidence 666666666655544
No 347
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.82 E-value=1.8 Score=24.40 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=16.4
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHhc
Q 012804 13 CVCTFCKANRLEKAEAIIIDGIRL 36 (456)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~ 36 (456)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 556677777777777777776653
No 348
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=86.69 E-value=21 Score=31.21 Aligned_cols=99 Identities=10% Similarity=-0.123 Sum_probs=51.7
Q ss_pred CcChhhHHHHHHHHHHcCC------------hHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012804 249 TFDGFGYCTVIAAFVKIGR------------LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 316 (456)
Q Consensus 249 ~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 316 (456)
|-|..+|-.++..--..-. .+.-..+++++++.++ .+......++..+.+..+.++..+-++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5566666666554332211 2334455666665533 35556666666666666666666666666654
Q ss_pred CCCcCHHhHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 012804 317 GFECDKYTHTILIDGLCK---AGNIKGARLHLEYMN 349 (456)
Q Consensus 317 ~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 349 (456)
.. -+...|...+..... .-.++....+|.+.+
T Consensus 95 ~~-~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 95 NP-GSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred CC-CChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 22 144555555544332 223455555555543
No 349
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=86.45 E-value=1.9 Score=21.33 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHhc
Q 012804 8 RLLNICVCTFCKANRLEKAEAIIIDGIRL 36 (456)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 36 (456)
..|..+...+...|++++|...++..++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 34566667777777777777777776654
No 350
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=86.10 E-value=3.8 Score=29.72 Aligned_cols=65 Identities=9% Similarity=0.076 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHHHHhCCC---HHHHHHHHHHhccC-----ChhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 012804 354 DSNLEAYNCIVDRLGKDGK---IDHAINVFESMEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 354 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 418 (456)
.++..+--.+..++.+..+ ..+.+.+++...+. .......|.-++.+.++++++.++.+.+++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 5566666667777777655 45567777776642 34445567778888999999999988888663
No 351
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=86.04 E-value=1.4 Score=21.85 Aligned_cols=27 Identities=11% Similarity=0.041 Sum_probs=17.0
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHH
Q 012804 390 TYSSMVHNLCKAKRLPSASKLLLSCLK 416 (456)
Q Consensus 390 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 416 (456)
.|..++..+...|++++|...+++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455566666666666666666666654
No 352
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.90 E-value=9.7 Score=30.45 Aligned_cols=56 Identities=9% Similarity=0.081 Sum_probs=31.0
Q ss_pred HHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012804 224 MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT 280 (456)
Q Consensus 224 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 280 (456)
+..+.+.+...+++...+.-.+.. |.+......+++.++-.|++++|..-++-.-.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 344445555666666555555543 44455555556666666666666655554443
No 353
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=85.66 E-value=14 Score=29.87 Aligned_cols=29 Identities=7% Similarity=-0.074 Sum_probs=21.5
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 012804 390 TYSSMVHNLCKAKRLPSASKLLLSCLKSG 418 (456)
Q Consensus 390 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 418 (456)
....++....+.|+.++|.+.|.+++..+
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34455666678888888888888888664
No 354
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=85.32 E-value=13 Score=27.64 Aligned_cols=83 Identities=14% Similarity=0.188 Sum_probs=47.3
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHHHhCC-----CCCCHhHHHHHHHHHHcCCC-hhHHHHHHHHHHHCCCCCCHHhHH
Q 012804 43 VTYNMLIDAYCQFVSFDAGYTILNRMREAG-----ISPDVVTYNSLIAGATRNSL-LSCSLDLLDEMLEMGIPPDVWSYN 116 (456)
Q Consensus 43 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~ 116 (456)
...|.++.-....+++...+.+++.+.... -..+...|..++.+...... --.+..+|..|.+.+.++++.-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 344555555555555555555555553221 02345567777777655444 334556666676666677777777
Q ss_pred HHHHHHHhc
Q 012804 117 SLMHCLFQL 125 (456)
Q Consensus 117 ~l~~~~~~~ 125 (456)
.++.++.+-
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 777766554
No 355
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.65 E-value=74 Score=35.69 Aligned_cols=150 Identities=15% Similarity=0.092 Sum_probs=89.7
Q ss_pred HHHHHHHcCCChhHHHHHHHHH----HHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 012804 82 SLIAGATRNSLLSCSLDLLDEM----LEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGL 157 (456)
Q Consensus 82 ~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 157 (456)
.+..+-.+.+.+.+|.-.++.- .+. ......|..+...|...++++...-+...... .| .. ..-+...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~--sl-~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DP--SL-YQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Cc--cH-HHHHHHH
Confidence 3445556778888888888873 221 11233344555589999999988877764211 22 22 2334456
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHH-HHHHHhcCchhHH
Q 012804 158 CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI-MKCCFRNRKYKLG 236 (456)
Q Consensus 158 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a 236 (456)
...|+++.|...|+.+.+.+ ++...+++-++......+.++...-..+-.... ..+....++.+ ..+.-+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 67899999999999998873 334667777777767777777776655544332 12222223222 2333456666666
Q ss_pred HHHHH
Q 012804 237 LEILS 241 (456)
Q Consensus 237 ~~~~~ 241 (456)
.....
T Consensus 1538 e~~l~ 1542 (2382)
T KOG0890|consen 1538 ESYLS 1542 (2382)
T ss_pred hhhhh
Confidence 55544
No 356
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.32 E-value=17 Score=28.14 Aligned_cols=40 Identities=10% Similarity=-0.071 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012804 304 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 351 (456)
Q Consensus 304 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (456)
++|...|+...+. .|+..+|+.-+... .+|-.+..++.+.
T Consensus 97 ~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 97 EKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHH
Confidence 3444444444443 56666776666554 2345555555444
No 357
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=84.18 E-value=33 Score=31.24 Aligned_cols=126 Identities=11% Similarity=0.074 Sum_probs=83.9
Q ss_pred HHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCCh
Q 012804 14 VCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLL 93 (456)
Q Consensus 14 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 93 (456)
|.--...|+.-.|-+-+...++..+ .++.............|+++.+.+.+...... +.....+...+++...+.|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~-~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQ-QDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCC-CCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 3344456777766655555555432 23333334445556789999998888776543 334566778888888899999
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 012804 94 SCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGD 142 (456)
Q Consensus 94 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 142 (456)
++|..+-+-|....++ ++..........-..|-++++.-.++++...+
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9999998888877666 44444444444556677888888888877654
No 358
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=84.05 E-value=20 Score=30.00 Aligned_cols=56 Identities=14% Similarity=0.014 Sum_probs=23.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 012804 189 IKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK 244 (456)
Q Consensus 189 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 244 (456)
|.+++..++|.++..+.-+--+..-+..+.....-|-.|.+.+.+..+.++-+.-.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44455555555554443333222112223333333334445555554444444444
No 359
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.79 E-value=44 Score=32.44 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=27.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Q 012804 117 SLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKN 160 (456)
Q Consensus 117 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 160 (456)
.++-.|.++|++++|.++....... .......+...+..+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 5677788888888888888554432 244455666667666654
No 360
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=83.71 E-value=25 Score=29.49 Aligned_cols=129 Identities=12% Similarity=0.094 Sum_probs=73.6
Q ss_pred CchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcC-----CCCC--------HHhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 012804 5 LSTRLLNICVCTFCKANRLEKAEAIIIDGIRLG-----VLPD--------VVTYNMLIDAYCQFVSFDAGYTILNRMREA 71 (456)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 71 (456)
|-+.......+.+.-..||..|++.-++..+.= ...+ ......-|.+++..++|.++..+.-+--+.
T Consensus 33 ~a~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~ 112 (309)
T PF07163_consen 33 PAVSLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQV 112 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 344555566666777888999888888766531 0111 112344567777788887777665444322
Q ss_pred --CCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh-----cCChhHHHHHH
Q 012804 72 --GISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQ-----LGKPDEANRVF 135 (456)
Q Consensus 72 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~ 135 (456)
.++|.+- ..=|-.|.+.++...+.++-..-...--.-+...|..++..|.. .|.+++|+++.
T Consensus 113 pEklPpkIl--eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 113 PEKLPPKIL--ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred cccCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 1333333 33344467777777777776665553111122335555555443 47777777765
No 361
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=83.70 E-value=3.8 Score=26.45 Aligned_cols=45 Identities=11% Similarity=0.021 Sum_probs=24.1
Q ss_pred hhCcHHHHHHHHHHHHhcCCCCCH--HhHHHHHHHHHccCChhHHHH
Q 012804 19 KANRLEKAEAIIIDGIRLGVLPDV--VTYNMLIDAYCQFVSFDAGYT 63 (456)
Q Consensus 19 ~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~ 63 (456)
.+++.++|+..|..+++.-..+.. .++..++.+++..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666654333221 144555555666666555544
No 362
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=83.52 E-value=44 Score=32.15 Aligned_cols=76 Identities=8% Similarity=0.016 Sum_probs=28.1
Q ss_pred HHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012804 272 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 349 (456)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 349 (456)
....+.++.+-+..+......++..|.+.|-.+.|.++.+.+-.+-. ...-|...+.-+.+.|+......+...+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444444432333445556666666677766666666665543311 12234444444555555555444444443
No 363
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=83.23 E-value=12 Score=26.92 Aligned_cols=43 Identities=5% Similarity=0.076 Sum_probs=20.1
Q ss_pred HHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012804 272 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 314 (456)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 314 (456)
.+-++.+...++.|++......++++.+.+|+..|.++|+-++
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3333444444444444444444444444445444444444444
No 364
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=83.23 E-value=5.2 Score=28.55 Aligned_cols=43 Identities=16% Similarity=0.032 Sum_probs=24.7
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 012804 409 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 451 (456)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 451 (456)
+-+..+...++-|++......+++|++.+++..|.++|+-++.
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344444445556666666666666666666666666665543
No 365
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.08 E-value=12 Score=25.53 Aligned_cols=76 Identities=13% Similarity=0.086 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhCCCHHHHHHHHHHhccCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 012804 338 IKGARLHLEYMNKIGFDSNLEAYNCIV--DRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCL 415 (456)
Q Consensus 338 ~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 415 (456)
.++|..+-+-+...+ +..-...+| ..+...|++++|..+.+...-+|...|.++ +-.+.|-.+++..-+-++-
T Consensus 21 HqEA~tIAdwL~~~~---~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~AL--ce~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 21 HQEANTIADWLHLKG---ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLAL--CEWRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHhcCC---chHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHH--HHHhhccHHHHHHHHHHHH
Confidence 356666655555432 111112222 245566777777777666655566655544 2245555555555555554
Q ss_pred HcC
Q 012804 416 KSG 418 (456)
Q Consensus 416 ~~~ 418 (456)
..|
T Consensus 96 ~sg 98 (115)
T TIGR02508 96 ASG 98 (115)
T ss_pred hCC
Confidence 443
No 366
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.06 E-value=55 Score=32.94 Aligned_cols=62 Identities=5% Similarity=-0.024 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHH-hHHHHHH---HHHccCChhHHHHHHHHHHhC
Q 012804 10 LNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVV-TYNMLID---AYCQFVSFDAGYTILNRMREA 71 (456)
Q Consensus 10 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~---~~~~~~~~~~a~~~~~~~~~~ 71 (456)
+..=+..+....++++|..+.+.....++.-... .+..... -+..+|++++|.+.|.++...
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d 375 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEID 375 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccC
Confidence 6666788888899999999888665433221111 1111112 245688999999999988753
No 367
>PRK11619 lytic murein transglycosylase; Provisional
Probab=82.92 E-value=49 Score=32.30 Aligned_cols=250 Identities=12% Similarity=0.037 Sum_probs=125.5
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCC
Q 012804 83 LIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRY 162 (456)
Q Consensus 83 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 162 (456)
.+..+.+.+++....+.+. ..+.+...-.....+....|+.++|......+-..| ...+.....++..+.+.|.
T Consensus 105 ~l~~La~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 105 FVNELARREDWRGLLAFSP-----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHHHHHccCHHHHHHhcC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCC
Confidence 3444555666665555221 123455555566777777888777777766665555 4445666677777765554
Q ss_pred hHHH--HHHHHHHHhCCCCCcHHHHHHHHHHHH------------HcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH-
Q 012804 163 TDNA--LRMFRGLQKHGFVPELVTYNILIKGLC------------KAGRLRTARWILKELGDSGHAPNAITYTTIMKCC- 227 (456)
Q Consensus 163 ~~~a--~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~- 227 (456)
.... .+-++.+...| +...-..+..... -..+...+...+.. +.++...-..++.++
T Consensus 179 lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~ 250 (644)
T PRK11619 179 QDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFA 250 (644)
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHH
Confidence 4332 22222222222 1111111111110 00111111111111 112221111111111
Q ss_pred -HhcCchhHHHHHHHHHHHcC-CCcCh--hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCH
Q 012804 228 -FRNRKYKLGLEILSAMKRKG-YTFDG--FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 303 (456)
Q Consensus 228 -~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 303 (456)
....+.+.|...+....... ..+.. .....+.......+..+++...+....... .+......-+..-...+++
T Consensus 251 Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw 328 (644)
T PRK11619 251 SVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDR 328 (644)
T ss_pred HHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCH
Confidence 23455678888888765443 22111 122333333333322556666666554332 2444455555566688899
Q ss_pred HHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012804 304 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 349 (456)
Q Consensus 304 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 349 (456)
+.+...+..|.... .-...-.-.+.+++...|+.++|..+|+.+.
T Consensus 329 ~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 329 RGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888888875532 2244455667777777899999999998874
No 368
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.72 E-value=28 Score=29.39 Aligned_cols=175 Identities=14% Similarity=0.074 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----Hc----CCCcCHHhHHHHHHHH-H----h
Q 012804 268 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME----KQ----GFECDKYTHTILIDGL-C----K 334 (456)
Q Consensus 268 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~----~~~~~~~~~~~l~~~~-~----~ 334 (456)
..+|+++|.-++.+.-+ ..+-+.++..+....+..+|...+.... +. +.. ...+... +.| . -
T Consensus 149 s~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~n-e~vts~d--~~Ykld~~~~ 223 (361)
T COG3947 149 SRKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNAN-EAVTSQD--RKYKLDAGLP 223 (361)
T ss_pred hhHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccC-ceEEEcC--CceEEecCCc
Confidence 35788888888876322 3344567777888888888877665432 10 000 0000000 000 0 0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH-----HhccCChhhHHHHHHHHHccCChhHHHH
Q 012804 335 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE-----SMEVKDSFTYSSMVHNLCKAKRLPSASK 409 (456)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 409 (456)
.-++.+-+...+.+... ..+..-+..++..| +-+-++++.-.|. ...+.-...+......|...|.+.+|.+
T Consensus 224 k~Dv~e~es~~rqi~~i--nltide~kelv~~y-kgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~ 300 (361)
T COG3947 224 KYDVQEYESLARQIEAI--NLTIDELKELVGQY-KGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQ 300 (361)
T ss_pred cccHHHHHHHhhhhhcc--ccCHHHHHHHHHHh-cCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 01222333333333322 23334444444333 1111111111111 1111122344455677778888888888
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 012804 410 LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 451 (456)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 451 (456)
+.++.+..+ +.+...+..+...+...|+--.|.+-++++.+
T Consensus 301 l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 301 LHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 888887664 33666777777888888887777776666543
No 369
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=82.33 E-value=13 Score=25.11 Aligned_cols=52 Identities=13% Similarity=0.009 Sum_probs=25.3
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHcCCC
Q 012804 41 DVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISP-DVVTYNSLIAGATRNSL 92 (456)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 92 (456)
|......+...+...|+++.|++.+-.+.+..... +...-..++..+.-.|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 55555556666666666666666666665543221 23334445555544444
No 370
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.13 E-value=52 Score=32.08 Aligned_cols=103 Identities=9% Similarity=-0.032 Sum_probs=68.1
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHhcCCCC---CHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 012804 13 CVCTFCKANRLEKAEAIIIDGIRLGVLP---DVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATR 89 (456)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 89 (456)
=++.+.+.+.+++|+...+.... ..| -.......+..+.-.|++++|-...-.|... +..-|..-+..+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 36788899999999998775432 222 2335677888888889999998888887743 56667666666666
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 012804 90 NSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQ 124 (456)
Q Consensus 90 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 124 (456)
.++...... -+.......+...|..++..+..
T Consensus 436 ~~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 436 LDQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccccchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 665443322 22322222456678888777776
No 371
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=82.01 E-value=4 Score=24.11 Aligned_cols=37 Identities=8% Similarity=-0.028 Sum_probs=25.7
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHH
Q 012804 391 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 429 (456)
Q Consensus 391 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 429 (456)
...+.-++.+.|++++|.+..+.+++. .|+..-...|
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L 40 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHH
Confidence 345677888999999999999998866 5665554444
No 372
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.97 E-value=28 Score=28.91 Aligned_cols=207 Identities=15% Similarity=0.061 Sum_probs=131.5
Q ss_pred CCCCCHHhHHHHHHH-HHhcCChhHHHHHHHHHHhCCCCCChh---HHHHHHHHHHhcCChHHHHHHHHHHHhC---CC-
Q 012804 107 GIPPDVWSYNSLMHC-LFQLGKPDEANRVFQDMICGDLTPCTA---TFNIMLNGLCKNRYTDNALRMFRGLQKH---GF- 178 (456)
Q Consensus 107 ~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~- 178 (456)
+-+||+..=+..-.. -.+..++++|+.-|++..+..-..... ..-.++....+.+++++....+.++..- .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 455666554432221 124457899999999988763233333 3345688899999999999999888642 11
Q ss_pred -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-----CCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCc--
Q 012804 179 -VPELVTYNILIKGLCKAGRLRTARWILKELGD-----SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF-- 250 (456)
Q Consensus 179 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 250 (456)
.-+..+.|.++.......+.+-....++.-.. .+-..--.|-..+...|...+.+....+++.++.......
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 12455677777776666676666666654322 1112222344567788889999999999999887542111
Q ss_pred ---------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCccCHHHHHHHH----HHHHhcCCHHHHHHHHHHH
Q 012804 251 ---------DGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLI----NLYCKEGKLEAAYLLLDEM 313 (456)
Q Consensus 251 ---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~ 313 (456)
-...|..-++.|....+-.....++++.+.. ..-|.+.....+- ..+.+.|++++|..-|-+.
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHH
Confidence 1245677788888888888888888877653 2345555444332 2345678888886544443
No 373
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.77 E-value=4.4 Score=26.17 Aligned_cols=46 Identities=11% Similarity=-0.051 Sum_probs=29.9
Q ss_pred ccCChhHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHccCChHHHHHH
Q 012804 400 KAKRLPSASKLLLSCLKSGVRIL--KSAQKAVVDGLRHSGCRREAKKI 445 (456)
Q Consensus 400 ~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~ 445 (456)
...+.++|+..++++++.-..|. ..++..+..++...|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777776633322 23455666777778887777665
No 374
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=81.23 E-value=37 Score=29.72 Aligned_cols=98 Identities=13% Similarity=0.008 Sum_probs=59.5
Q ss_pred cCHHHHHHHHHHHHhcCC------------HHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 012804 285 LDIVSYNTLINLYCKEGK------------LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 352 (456)
Q Consensus 285 ~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 352 (456)
-|+.+|..++..--..-. .+.-+.+++++.+.+. -+......++..+.+..+.+...+-++.+....
T Consensus 17 ~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~ 95 (321)
T PF08424_consen 17 HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN 95 (321)
T ss_pred ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 378888877764333211 2344566777666632 355566667777777777777777777777652
Q ss_pred CCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHhc
Q 012804 353 FDSNLEAYNCIVDRLGK---DGKIDHAINVFESME 384 (456)
Q Consensus 353 ~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~ 384 (456)
+.+...|...+..... .-.++....+|.+..
T Consensus 96 -~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 96 -PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred -CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 4466777777765433 234556666665443
No 375
>PRK12798 chemotaxis protein; Reviewed
Probab=81.05 E-value=41 Score=30.16 Aligned_cols=153 Identities=12% Similarity=0.055 Sum_probs=74.9
Q ss_pred cCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHc--CCCcCHHhHHHHHHHHHhcCCHHHH
Q 012804 265 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC-KEGKLEAAYLLLDEMEKQ--GFECDKYTHTILIDGLCKAGNIKGA 341 (456)
Q Consensus 265 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a 341 (456)
.|+..++.+.+..+.....++....+..|+.+-. ...++.+|+.+|+...-. |--........-+......|+.++.
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 4666666666666665555555555555555433 344666677766665432 1111122333344445566666665
Q ss_pred HHHHHHHHhC-CCCCCHH-HHHHHHHHHHh---CCCHHHHHHHHHHhccC-ChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 012804 342 RLHLEYMNKI-GFDSNLE-AYNCIVDRLGK---DGKIDHAINVFESMEVK-DSFTYSSMVHNLCKAKRLPSASKLLLSCL 415 (456)
Q Consensus 342 ~~~~~~~~~~-~~~~~~~-~~~~l~~~~~~---~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 415 (456)
..+-....++ ...|=.. .+..+...+.+ .-..+.-..++..|... ....|..+.+.-.-.|+.+-|.-.-+++.
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~ 284 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERAL 284 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 5555444332 1122111 11222222222 22233334444444333 44566666666666777766666666665
Q ss_pred Hc
Q 012804 416 KS 417 (456)
Q Consensus 416 ~~ 417 (456)
..
T Consensus 285 ~L 286 (421)
T PRK12798 285 KL 286 (421)
T ss_pred Hh
Confidence 44
No 376
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.88 E-value=33 Score=28.89 Aligned_cols=34 Identities=18% Similarity=0.086 Sum_probs=20.4
Q ss_pred HHHHHHHccCChhHHHHHHHHH----HHcCCCCCHHhH
Q 012804 393 SMVHNLCKAKRLPSASKLLLSC----LKSGVRILKSAQ 426 (456)
Q Consensus 393 ~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~ 426 (456)
.++.++.+.|.+.+|+.++... .+.+-+|+-.+.
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 4667777888888887665443 333445544443
No 377
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.74 E-value=34 Score=28.96 Aligned_cols=70 Identities=17% Similarity=0.205 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCcCHHhH
Q 012804 255 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME-----KQGFECDKYTH 325 (456)
Q Consensus 255 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~ 325 (456)
+......|..+|.+.+|..+.+.....+ +.+...+-.++..+...|+--.+.+-++.+. +.|+..+...+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 3445667777888888888888777764 3366667777788888887666666666653 23555544433
No 378
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=80.53 E-value=34 Score=28.93 Aligned_cols=116 Identities=11% Similarity=0.127 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHh-cC-chhHHHHHHHHHHHc-CCCcChhhHHHHHHHHHHcCChHHHH
Q 012804 197 RLRTARWILKELGD-SGHAPNAITYTTIMKCCFR-NR-KYKLGLEILSAMKRK-GYTFDGFGYCTVIAAFVKIGRLKEAT 272 (456)
Q Consensus 197 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 272 (456)
...+|+.+|+.... ..+.-|..+...+++.... .+ ....-.++.+-+... +..++..+...++..++..+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34555566553222 2233466666666665544 11 222222333333322 23556666667777777777777777
Q ss_pred HHHHHHHHC-CCccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012804 273 DYMEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 312 (456)
Q Consensus 273 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 312 (456)
++++..... +...|...|...+......|+..-...+.++
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 777766654 4555677777777777777776655555543
No 379
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.71 E-value=50 Score=30.30 Aligned_cols=40 Identities=10% Similarity=0.072 Sum_probs=22.5
Q ss_pred hhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCCh
Q 012804 19 KANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSF 58 (456)
Q Consensus 19 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 58 (456)
..+.++.-++.++.+...|.......+|.-...|.+.|..
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~t 68 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCT 68 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccc
Confidence 3456666666666666555444444555555555555543
No 380
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=79.57 E-value=37 Score=28.74 Aligned_cols=60 Identities=5% Similarity=-0.040 Sum_probs=29.2
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCChHHHHHH
Q 012804 110 PDVWSYNSLMHCLFQLGKPDEANRVFQDMICG-DLTPCTATFNIMLNGLCKNRYTDNALRM 169 (456)
Q Consensus 110 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 169 (456)
++..+...++..++..+++.+-.+.++..... +...|...|..+++.....|+..-...+
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 34444445555555555555555555544433 2334445555555555555554443333
No 381
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=79.18 E-value=7.2 Score=23.99 Aligned_cols=26 Identities=8% Similarity=0.059 Sum_probs=13.1
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHH
Q 012804 390 TYSSMVHNLCKAKRLPSASKLLLSCL 415 (456)
Q Consensus 390 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 415 (456)
....++.+|...|++++|.++++++.
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344555555555555555555543
No 382
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=79.14 E-value=48 Score=29.82 Aligned_cols=56 Identities=14% Similarity=0.129 Sum_probs=40.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCccCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 012804 260 AAFVKIGRLKEATDYMEQMVTDGVQLDIV--SYNTLINLYC--KEGKLEAAYLLLDEMEKQ 316 (456)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 316 (456)
..+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455789999999999999886 454444 4555555554 366788999998887664
No 383
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.77 E-value=34 Score=27.90 Aligned_cols=169 Identities=11% Similarity=0.087 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC-----CCCCCHHHHHHHHHHHHhcCchhHHHHH
Q 012804 165 NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS-----GHAPNAITYTTIMKCCFRNRKYKLGLEI 239 (456)
Q Consensus 165 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 239 (456)
++.++..+..+... ++.. +. .+.-.+.+++|.++|.+.... +...-...|......+.+.|+-+.|-.
T Consensus 3 ~a~~l~k~AEkK~~-~s~g-F~----lfgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat- 75 (288)
T KOG1586|consen 3 DAVQLMKKAEKKLN-GSGG-FL----LFGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAAT- 75 (288)
T ss_pred cHHHHHHHHHHhcc-cCCc-cc----ccCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHH-
Confidence 35555666555532 2221 11 455566899999998775331 011112222333333333333222222
Q ss_pred HHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHH-------HHHHHHHHHHhc-CCHHHHHHHHH
Q 012804 240 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV-------SYNTLINLYCKE-GKLEAAYLLLD 311 (456)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~-~~~~~a~~~~~ 311 (456)
+|.....+| +.+++++|...++..++. -.+.. ....+...|-.. .++++|+..++
T Consensus 76 --------------~YveA~~cy-kk~~~~eAv~cL~~aieI--yt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE 138 (288)
T KOG1586|consen 76 --------------TYVEAANCY-KKVDPEEAVNCLEKAIEI--YTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYE 138 (288)
T ss_pred --------------HHHHHHHHh-hccChHHHHHHHHHHHHH--HHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHH
Confidence 232223322 334555555555544331 11111 112233333332 56667777776
Q ss_pred HHHHc--CCCcC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 012804 312 EMEKQ--GFECD---KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL 357 (456)
Q Consensus 312 ~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 357 (456)
..-+. |-+.+ ...+..+...-...+++.+|+.+|+++....+..+.
T Consensus 139 ~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 139 QAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 66431 11112 223444444456778889999999988776544443
No 384
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.63 E-value=34 Score=28.10 Aligned_cols=98 Identities=11% Similarity=-0.090 Sum_probs=69.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHH-----------HHHHHHHHHHhCCCHHHHHHHHHHhc
Q 012804 322 KYTHTILIDGLCKAGNIKGARLHLEYMNKI------GFDSNLE-----------AYNCIVDRLGKDGKIDHAINVFESME 384 (456)
Q Consensus 322 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~ 384 (456)
..+...-..-+.+.|++.+|...++.++.. .-.|... .+..+..++...|++-++++...++.
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 345555566678899999999999987521 1123222 23334456677888989998888887
Q ss_pred cC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 012804 385 VK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 419 (456)
Q Consensus 385 ~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 419 (456)
.. +..+|..-+.+....=+.++|..-|.++++..+
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 76 667777777777777788899999999987643
No 385
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.79 E-value=3.3 Score=35.38 Aligned_cols=87 Identities=13% Similarity=-0.113 Sum_probs=43.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccCChh---hHHHHHHHHHccCChhHHHHHH
Q 012804 335 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF---TYSSMVHNLCKAKRLPSASKLL 411 (456)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~ 411 (456)
.|.++.|+..+...+... ++....+..-..++.+.+++..|++=+......++. .|-.-..+..-.|++.+|...+
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 445555555555555543 334444444444555555555555555555444222 2222233334456666666666
Q ss_pred HHHHHcCCCCC
Q 012804 412 LSCLKSGVRIL 422 (456)
Q Consensus 412 ~~~~~~~~~~~ 422 (456)
..+++.++.+.
T Consensus 206 ~~a~kld~dE~ 216 (377)
T KOG1308|consen 206 ALACKLDYDEA 216 (377)
T ss_pred HHHHhccccHH
Confidence 66665555433
No 386
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=76.34 E-value=26 Score=27.27 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=12.8
Q ss_pred HHHHHcCCChhHHHHHHHHHHH
Q 012804 84 IAGATRNSLLSCSLDLLDEMLE 105 (456)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~ 105 (456)
+-.|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3445566666666666666555
No 387
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=75.92 E-value=22 Score=24.99 Aligned_cols=28 Identities=18% Similarity=0.027 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHH
Q 012804 389 FTYSSMVHNLCKAKRLPSASKLLLSCLK 416 (456)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 416 (456)
.-|..++..|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4577888888999999999999988876
No 388
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.70 E-value=17 Score=28.85 Aligned_cols=29 Identities=17% Similarity=0.101 Sum_probs=13.9
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 012804 387 DSFTYSSMVHNLCKAKRLPSASKLLLSCL 415 (456)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 415 (456)
++..+..++.++...|+.++|.+..+++.
T Consensus 143 ~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 143 DPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444444444555555544444444
No 389
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=75.10 E-value=20 Score=24.32 Aligned_cols=24 Identities=8% Similarity=0.026 Sum_probs=13.7
Q ss_pred HHHHHHccCChhHHHHHHHHHHHc
Q 012804 394 MVHNLCKAKRLPSASKLLLSCLKS 417 (456)
Q Consensus 394 l~~~~~~~~~~~~A~~~~~~~~~~ 417 (456)
++......|++++|.+.++++++.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344445566666666666666544
No 390
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=74.48 E-value=85 Score=30.25 Aligned_cols=76 Identities=8% Similarity=0.044 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012804 237 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 314 (456)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 314 (456)
....+.+...-...+......++..|.+.|-.+.+..+.+.+-..-. ...-|...+..+.+.|+...+..+.+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444444443234455566677777777777777777766654321 22345555556666666666555555444
No 391
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.41 E-value=91 Score=30.59 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHhccCChhhHHHHHHHHHccCChhHHHHHHH-------HHHHc-CCCCCHHhHHHHHHHHHcc
Q 012804 372 KIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLL-------SCLKS-GVRILKSAQKAVVDGLRHS 436 (456)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~~l~~~~~~~ 436 (456)
++++|.++..+ ...+..++..+.+.|+..+|+.+.= ++++- .-+-|+..|..|+.-....
T Consensus 636 ~lekA~eiC~q-----~~~~~E~VYlLgrmGn~k~AL~lII~el~die~AIefvKeq~D~eLWe~LI~~~ldk 703 (846)
T KOG2066|consen 636 NLEKALEICSQ-----KNFYEELVYLLGRMGNAKEALKLIINELRDIEKAIEFVKEQDDSELWEDLINYSLDK 703 (846)
T ss_pred CHHHHHHHHHh-----hCcHHHHHHHHHhhcchHHHHHHHHHHhhCHHHHHHHHHhcCCHHHHHHHHHHhhcC
Confidence 35566666552 2334455556666666666655421 11111 1234888888888765543
No 392
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=74.08 E-value=1e+02 Score=30.88 Aligned_cols=227 Identities=9% Similarity=0.023 Sum_probs=111.6
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCcH-------HHHHHHH-HHHHHcCCHHHHHHHHHHHhhC----CCCCCHHHHHHH
Q 012804 156 GLCKNRYTDNALRMFRGLQKHGFVPEL-------VTYNILI-KGLCKAGRLRTARWILKELGDS----GHAPNAITYTTI 223 (456)
Q Consensus 156 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l 223 (456)
......++++|..++.++...-..|+. ..++.+- ......|+++.+.++.+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 344567888888888777654222211 1233322 2234567888888877765542 222344556666
Q ss_pred HHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHH-----HHHHHHcCChHH--HHHHHHHHHHC---CCc---cCHHHH
Q 012804 224 MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV-----IAAFVKIGRLKE--ATDYMEQMVTD---GVQ---LDIVSY 290 (456)
Q Consensus 224 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~--a~~~~~~~~~~---~~~---~~~~~~ 290 (456)
..+..-.|++++|..+..+..+..-..+...+..+ ...+...|+... .+..+...... ..+ +-..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 67777788888888887776654222233222222 223445563222 22222222221 001 122333
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHHcCCCcCHHhH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHH
Q 012804 291 NTLINLYCKE-GKLEAAYLLLDEMEKQGFECDKYTH--TILIDGLCKAGNIKGARLHLEYMNKIGFDS----NLEAYNCI 363 (456)
Q Consensus 291 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l 363 (456)
..+..++.+. +...++..-+.-.......|-.... ..++......|+.++|...+.++......+ +.......
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 4444444441 1222222222222222222222222 356677778888888888888776542222 22222222
Q ss_pred HH--HHHhCCCHHHHHHHHHH
Q 012804 364 VD--RLGKDGKIDHAINVFES 382 (456)
Q Consensus 364 ~~--~~~~~g~~~~a~~~~~~ 382 (456)
+. .....|+...+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 22 23456777777666655
No 393
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.79 E-value=71 Score=28.59 Aligned_cols=63 Identities=10% Similarity=-0.051 Sum_probs=40.5
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 012804 113 WSYNSLMHCLFQLGKPDEANRVFQDMICGD--LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQK 175 (456)
Q Consensus 113 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 175 (456)
..+..+...|..+|+++.|++.|.+...-- ....+..|-.++....-.|+|.....+..+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 445667778888888888888888755421 122344555666666667777666666655544
No 394
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=72.68 E-value=13 Score=22.91 Aligned_cols=48 Identities=23% Similarity=0.153 Sum_probs=33.1
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhc
Q 012804 403 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 452 (456)
Q Consensus 403 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 452 (456)
..++..++++.+... +-|..-.-.++.++...|++++|.++.+++.+.
T Consensus 5 ~~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 5 QLEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp -HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344555555555433 336666667899999999999999999988653
No 395
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=72.64 E-value=61 Score=27.79 Aligned_cols=85 Identities=15% Similarity=0.110 Sum_probs=40.7
Q ss_pred hcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc----CChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh----c
Q 012804 229 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI----GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK----E 300 (456)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 300 (456)
..+++..+...+......+.. .....+...|... .+...|..++....+.|.. .....+...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcc
Confidence 445566666666666553311 2223333333322 2455566666655544322 223334444433 2
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q 012804 301 GKLEAAYLLLDEMEKQGFE 319 (456)
Q Consensus 301 ~~~~~a~~~~~~~~~~~~~ 319 (456)
.+..+|...+....+.|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNV 145 (292)
T ss_pred cCHHHHHHHHHHHHHcCCh
Confidence 3556666666666665543
No 396
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.63 E-value=1.1e+02 Score=30.88 Aligned_cols=39 Identities=10% Similarity=0.134 Sum_probs=25.0
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Q 012804 121 CLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCK 159 (456)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 159 (456)
.|......+-+..+++.+....-.++....+.++..|..
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 455666677777777777765545556666666666654
No 397
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=72.24 E-value=75 Score=28.65 Aligned_cols=57 Identities=12% Similarity=0.132 Sum_probs=34.3
Q ss_pred HHHHHhhCcHHHHHHHHHHHHhcCCCCCHH--hHHHHHHHHH--ccCChhHHHHHHHHHHhC
Q 012804 14 VCTFCKANRLEKAEAIIIDGIRLGVLPDVV--TYNMLIDAYC--QFVSFDAGYTILNRMREA 71 (456)
Q Consensus 14 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 71 (456)
+..+.+.++|..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455777888888888887775 333333 3444444443 344666777777766543
No 398
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=72.03 E-value=29 Score=32.48 Aligned_cols=151 Identities=15% Similarity=0.111 Sum_probs=88.8
Q ss_pred CCHHhHHHHHHHHHccC--ChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 012804 40 PDVVTYNMLIDAYCQFV--SFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNS 117 (456)
Q Consensus 40 ~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 117 (456)
|+..+...++.-....- ..+-+-.++-.|..- ..|--...|...-.+.-.|+...|.+.+.......+.-..+....
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~-~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~ 647 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINKP-NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVN 647 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCC-CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHH
Confidence 45555554444332221 223344444444432 233333334333344557888888887776665433323344556
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 012804 118 LMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLC 193 (456)
Q Consensus 118 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 193 (456)
|.....+.|..-.|-.++.+..... ...+-++..+.+++.-..+++.|++.|+...+.. +.+...-+.|...-|
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 6777777777778888777766554 3345667777888888888899998888887763 335555565555444
No 399
>PRK10941 hypothetical protein; Provisional
Probab=70.20 E-value=67 Score=27.22 Aligned_cols=53 Identities=11% Similarity=0.021 Sum_probs=28.6
Q ss_pred HHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 012804 365 DRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 417 (456)
Q Consensus 365 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 417 (456)
.+|.+.++++.|.++.+.+... ++.-+.--+-.|.+.|.+..|..-++..++.
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3455555555555555554443 3333444445556666666666666666555
No 400
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=69.44 E-value=97 Score=28.80 Aligned_cols=63 Identities=10% Similarity=0.036 Sum_probs=28.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 012804 111 DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH 176 (456)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 176 (456)
|.....+++..+.....+.-.+.+..+|...| .+-..+..++.+|... ..++-..+++++.+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~ 127 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY 127 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh
Confidence 33444444555555544555555555554432 2233444444444444 334444444444443
No 401
>PRK10941 hypothetical protein; Provisional
Probab=68.67 E-value=46 Score=28.14 Aligned_cols=62 Identities=11% Similarity=-0.064 Sum_probs=51.3
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhcc
Q 012804 391 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 453 (456)
Q Consensus 391 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 453 (456)
.+.+-.+|.+.++++.|++..+.++...+. ++.-+.--+..|.+.|.+..|..=++...+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 446677889999999999999999987544 77778878888999999999998887776544
No 402
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=67.77 E-value=70 Score=26.50 Aligned_cols=59 Identities=20% Similarity=0.283 Sum_probs=39.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Q 012804 257 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK-EGKLEAAYLLLDEMEK 315 (456)
Q Consensus 257 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~ 315 (456)
.++....+.++++++...+.++...+...+..-.+.+..+|-. .|....+++++..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 4556677778888888888888887777777777777766643 4555666666666654
No 403
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=66.74 E-value=83 Score=26.99 Aligned_cols=72 Identities=14% Similarity=0.264 Sum_probs=42.8
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHh----------cCChHHH
Q 012804 97 LDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCK----------NRYTDNA 166 (456)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a 166 (456)
.++++.+...++.|.-..+.-+.-.+.+.=.+...+.+++.+.+.. .-|..++..|+. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3566666666777776666655556666666777777777766432 224444444442 4666666
Q ss_pred HHHHHHH
Q 012804 167 LRMFRGL 173 (456)
Q Consensus 167 ~~~~~~~ 173 (456)
.++++..
T Consensus 338 mkLLQ~y 344 (370)
T KOG4567|consen 338 MKLLQNY 344 (370)
T ss_pred HHHHhcC
Confidence 6665443
No 404
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=66.11 E-value=52 Score=31.50 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=54.6
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHhcC--CCCCHHhHHHHHHHHHccCChhH------HHHHHHHHHhCCCCCCHhHHHHH
Q 012804 12 ICVCTFCKANRLEKAEAIIIDGIRLG--VLPDVVTYNMLIDAYCQFVSFDA------GYTILNRMREAGISPDVVTYNSL 83 (456)
Q Consensus 12 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~l 83 (456)
+|+++|..+|++.++.++++.....+ -+.-...+|..++...+.|.++- |.++++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78999999999999999999987543 22234578888999999998753 444444443 45577888777
Q ss_pred HHHHHc
Q 012804 84 IAGATR 89 (456)
Q Consensus 84 ~~~~~~ 89 (456)
+.+...
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 766543
No 405
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=65.93 E-value=39 Score=28.17 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=32.2
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHc----C-CCCCHHhHHHHHHHHHccCChHHHHHHH
Q 012804 392 SSMVHNLCKAKRLPSASKLLLSCLKS----G-VRILKSAQKAVVDGLRHSGCRREAKKIQ 446 (456)
Q Consensus 392 ~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 446 (456)
..++..|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.++...+-
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34556666677777777777666322 1 1223345555666777777777666553
No 406
>PHA02875 ankyrin repeat protein; Provisional
Probab=65.90 E-value=1.1e+02 Score=28.00 Aligned_cols=12 Identities=8% Similarity=0.099 Sum_probs=5.6
Q ss_pred HHHHHHHHHHhC
Q 012804 340 GARLHLEYMNKI 351 (456)
Q Consensus 340 ~a~~~~~~~~~~ 351 (456)
+..+-++.|...
T Consensus 298 ~C~~ei~~mk~~ 309 (413)
T PHA02875 298 KCIIELRRIKSE 309 (413)
T ss_pred HHHHHHHHHHhh
Confidence 344445555543
No 407
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=65.51 E-value=43 Score=28.96 Aligned_cols=94 Identities=15% Similarity=-0.037 Sum_probs=56.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC--HHHHHHHHHHHHhCCCHHHHHHHHHHhccCChh---hHHHHH
Q 012804 322 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGF-DSN--LEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF---TYSSMV 395 (456)
Q Consensus 322 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~ 395 (456)
...|..=..-|.+..++..|...|..-++... .|+ ...|+.-..+-...|++..|+.=...+...++. .|..=.
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 34555556667777788888888887665421 222 334444444455567777777766666665443 333344
Q ss_pred HHHHccCChhHHHHHHHHHH
Q 012804 396 HNLCKAKRLPSASKLLLSCL 415 (456)
Q Consensus 396 ~~~~~~~~~~~A~~~~~~~~ 415 (456)
.++....++++|....++..
T Consensus 161 kc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 55666777777777666654
No 408
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=65.23 E-value=79 Score=26.19 Aligned_cols=60 Identities=18% Similarity=0.087 Sum_probs=41.4
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHH-ccCChhHHHHHHHHHHh
Q 012804 11 NICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYC-QFVSFDAGYTILNRMRE 70 (456)
Q Consensus 11 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 70 (456)
-.++...-+.|++++++..+..+...++..+..-.+.+-.+|- .-|....+++++..+.+
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 3456778888999999999999999888888777777766662 23455566666666544
No 409
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=63.85 E-value=60 Score=24.36 Aligned_cols=60 Identities=17% Similarity=0.144 Sum_probs=27.9
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 012804 66 NRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLG 126 (456)
Q Consensus 66 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 126 (456)
+.+++.|++++.. -..++..+...++.-.|.++++.+.+.++..+..|.-.-+..+...|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344444443332 22344455555555556666666665554444444333344444444
No 410
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=63.48 E-value=29 Score=20.56 Aligned_cols=24 Identities=13% Similarity=0.003 Sum_probs=13.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHhccC
Q 012804 363 IVDRLGKDGKIDHAINVFESMEVK 386 (456)
Q Consensus 363 l~~~~~~~g~~~~a~~~~~~~~~~ 386 (456)
+.-++.+.|++++|.+..+.+.+.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh
Confidence 444556666666666666655444
No 411
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=63.25 E-value=1.2e+02 Score=27.55 Aligned_cols=59 Identities=19% Similarity=0.140 Sum_probs=39.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC--C-----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 012804 324 THTILIDGLCKAGNIKGARLHLEYMNKI--G-----FDSNLEAYNCIVDRLGKDGKIDHAINVFES 382 (456)
Q Consensus 324 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 382 (456)
+...|++.++-.||+..|+++++.+.-. + ..-...++..++.+|.-.+++.+|.+.|..
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~ 189 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQ 189 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777888888888888765311 1 112345667777788888888888888863
No 412
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=62.73 E-value=63 Score=24.20 Aligned_cols=98 Identities=12% Similarity=0.166 Sum_probs=65.7
Q ss_pred HHhCCCCCCHh--HHHHHHHHHHcCCChhHHHHHHHHHHHCCC-----CCCHHhHHHHHHHHHhcCC-hhHHHHHHHHHH
Q 012804 68 MREAGISPDVV--TYNSLIAGATRNSLLSCSLDLLDEMLEMGI-----PPDVWSYNSLMHCLFQLGK-PDEANRVFQDMI 139 (456)
Q Consensus 68 ~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~ 139 (456)
|.+.+..++.. ..+.++.-....+++.-.+.+++.+..-.. ..+...|..++....+..- ---+..+|.-+.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 33344444433 356777777777777777777777643210 2356788889888866665 445677888888
Q ss_pred hCCCCCChhHHHHHHHHHHhcCChHH
Q 012804 140 CGDLTPCTATFNIMLNGLCKNRYTDN 165 (456)
Q Consensus 140 ~~~~~~~~~~~~~l~~~~~~~~~~~~ 165 (456)
+.+.+++..-|..++.++.+....+.
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRGYFHDS 133 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcCCCCcc
Confidence 77788889999999988876644333
No 413
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=62.65 E-value=45 Score=30.06 Aligned_cols=95 Identities=14% Similarity=0.091 Sum_probs=59.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHhccC--
Q 012804 321 DKYTHTILIDGLCKAGNIKGARLHLEYMNKI-------GFDSN-----LEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 386 (456)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 386 (456)
+......++.++....++.+..+..+..... |..|- -.+...|++..+-.|++..|+++++.+.-.
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~ 153 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKK 153 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccc
Confidence 4445555566666666665555554442110 11111 123355666777788999998888765322
Q ss_pred ---------ChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 012804 387 ---------DSFTYSSMVHNLCKAKRLPSASKLLLSCL 415 (456)
Q Consensus 387 ---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 415 (456)
...++..++-+|.-.+++.+|++.|...+
T Consensus 154 ~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 154 GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778888888888888888888775
No 414
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=62.17 E-value=20 Score=30.45 Aligned_cols=38 Identities=32% Similarity=0.433 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 012804 290 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 327 (456)
Q Consensus 290 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 327 (456)
|+..|..-.+.||+++|+.++++.++.|..--..+|..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 45677777777777777777777777776544444433
No 415
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=62.06 E-value=63 Score=24.26 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=10.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC
Q 012804 294 INLYCKEGKLEAAYLLLDEMEKQGF 318 (456)
Q Consensus 294 ~~~~~~~~~~~~a~~~~~~~~~~~~ 318 (456)
+..+...++.-.|.++++.+.+.+.
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~p 51 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEGP 51 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCC
Confidence 3333333333444444444444333
No 416
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=61.48 E-value=48 Score=26.33 Aligned_cols=32 Identities=19% Similarity=0.087 Sum_probs=17.9
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012804 319 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 350 (456)
Q Consensus 319 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 350 (456)
.|+..++..++.++...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555555554
No 417
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=61.13 E-value=1.1e+02 Score=26.34 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHcCChHHH
Q 012804 254 GYCTVIAAFVKIGRLKEA 271 (456)
Q Consensus 254 ~~~~l~~~~~~~~~~~~a 271 (456)
.|..++.+++..|+.+-.
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 566677788877776644
No 418
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=60.95 E-value=54 Score=27.34 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=10.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 012804 328 LIDGLCKAGNIKGARLHLEYM 348 (456)
Q Consensus 328 l~~~~~~~~~~~~a~~~~~~~ 348 (456)
+..-|...|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 334444445555555554444
No 419
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=59.92 E-value=55 Score=22.60 Aligned_cols=50 Identities=14% Similarity=0.207 Sum_probs=20.5
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 012804 87 ATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGD 142 (456)
Q Consensus 87 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 142 (456)
+...|++++|..+.+.+. -||...|..|. -.+.|..+.+..-+.++..+|
T Consensus 49 LmNrG~Yq~Al~l~~~~~----~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKLC----YPDLEPWLALC--EWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCCC----CchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 344445555444443331 24444443332 233444444444444444443
No 420
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=59.73 E-value=52 Score=22.30 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=9.0
Q ss_pred HHHhCCCHHHHHHHHHHhc
Q 012804 366 RLGKDGKIDHAINVFESME 384 (456)
Q Consensus 366 ~~~~~g~~~~a~~~~~~~~ 384 (456)
.....|++++|.+.++++.
T Consensus 50 ~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3344455555555554443
No 421
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=59.57 E-value=52 Score=22.20 Aligned_cols=52 Identities=19% Similarity=0.124 Sum_probs=22.0
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHccCC
Q 012804 387 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI-LKSAQKAVVDGLRHSGC 438 (456)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 438 (456)
|......+...+...|++++|++.+-.+++..... +...-..++..+...|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 34444445555555555555555555554442221 23333444444444444
No 422
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=59.38 E-value=32 Score=19.78 Aligned_cols=31 Identities=19% Similarity=0.380 Sum_probs=14.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcCHHhHHHHH
Q 012804 299 KEGKLEAAYLLLDEMEKQGFECDKYTHTILI 329 (456)
Q Consensus 299 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 329 (456)
+.|-.+++...+++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444444444455554444444444444433
No 423
>PHA02875 ankyrin repeat protein; Provisional
Probab=58.88 E-value=1.4e+02 Score=27.29 Aligned_cols=140 Identities=19% Similarity=0.164 Sum_probs=63.8
Q ss_pred HHHHhhCcHHHHHHHHHHHHhcCCCCCHHh--HHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHh--HHHHHHHHHHcC
Q 012804 15 CTFCKANRLEKAEAIIIDGIRLGVLPDVVT--YNMLIDAYCQFVSFDAGYTILNRMREAGISPDVV--TYNSLIAGATRN 90 (456)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 90 (456)
...++.|+.+-+..++ +.|..|+... ..+.+...+..|+.+- .+.+.+.|..|+.. .....+...+..
T Consensus 7 ~~A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 7 CDAILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHC
Confidence 3445667776555544 4455554332 2334455556676653 33444455444322 112345556677
Q ss_pred CChhHHHHHHHHHHHCCCCCCHH---hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhH--HHHHHHHHHhcCChHH
Q 012804 91 SLLSCSLDLLDEMLEMGIPPDVW---SYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTAT--FNIMLNGLCKNRYTDN 165 (456)
Q Consensus 91 ~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~ 165 (456)
|+.+.+..+++ .|...+.. .-.+.+...+..|+.+ +++.+.+.|..|+... -...+...+..|+.+-
T Consensus 79 g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~ 150 (413)
T PHA02875 79 GDVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKG 150 (413)
T ss_pred CCHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 77766555543 33211110 0112334445566654 3334444454443211 1123444556666654
Q ss_pred HHHHH
Q 012804 166 ALRMF 170 (456)
Q Consensus 166 a~~~~ 170 (456)
+..++
T Consensus 151 v~~Ll 155 (413)
T PHA02875 151 IELLI 155 (413)
T ss_pred HHHHH
Confidence 44443
No 424
>PF13934 ELYS: Nuclear pore complex assembly
Probab=58.78 E-value=1e+02 Score=25.34 Aligned_cols=140 Identities=13% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 012804 303 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 382 (456)
Q Consensus 303 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 382 (456)
......+++.+...+.. +..-...+...+...+........-+-....+++++...+..-...+-+ +++++|.+.+..
T Consensus 26 ~~~L~~Ll~~i~~~~~~-~~~K~~l~~YlLlD~~~~~~~~~~~~Fa~~f~ip~~~~~~~~g~W~LD~-~~~~~A~~~L~~ 103 (226)
T PF13934_consen 26 DNDLRALLDLILSSNVS-LLKKHSLFYYLLLDLDDTRPSELAESFARAFGIPPKYIKFIQGFWLLDH-GDFEEALELLSH 103 (226)
T ss_pred HHHHHHHHHHHhcCCcC-HHHhHHHHHHHHHhcCccccccHHHHHHHHhCCCHHHHHHHHHHHHhCh-HhHHHHHHHhCC
Q ss_pred hccCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHH
Q 012804 383 MEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 448 (456)
Q Consensus 383 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 448 (456)
- ...+.....++.++...|+.+.|..+++.. ++.++...-..+......+|...+|..+.++
T Consensus 104 p-s~~~~~~~~Il~~L~~~~~~~lAL~y~~~~---~p~l~s~~~~~~~~~~La~~~v~EAf~~~R~ 165 (226)
T PF13934_consen 104 P-SLIPWFPDKILQALLRRGDPKLALRYLRAV---GPPLSSPEALTLYFVALANGLVTEAFSFQRS 165 (226)
T ss_pred C-CCCcccHHHHHHHHHHCCChhHHHHHHHhc---CCCCCCHHHHHHHHHHHHcCCHHHHHHHHHh
No 425
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=58.21 E-value=22 Score=17.55 Aligned_cols=29 Identities=14% Similarity=0.096 Sum_probs=16.6
Q ss_pred CcHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 012804 21 NRLEKAEAIIIDGIRLGVLPDVVTYNMLID 50 (456)
Q Consensus 21 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 50 (456)
|+++.|..+|+++++..+ -+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~-~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFP-KSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCC-CChHHHHHHHH
Confidence 456667777777766543 35555555443
No 426
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=58.10 E-value=31 Score=24.25 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=24.6
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHh
Q 012804 44 TYNMLIDAYCQFVSFDAGYTILNRMRE 70 (456)
Q Consensus 44 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 70 (456)
-|..++..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488999999999999999999998877
No 427
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=57.73 E-value=15 Score=26.69 Aligned_cols=31 Identities=26% Similarity=0.440 Sum_probs=20.5
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 012804 89 RNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHC 121 (456)
Q Consensus 89 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 121 (456)
..|.-..|..+|++|+++|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345555677888888888877765 5555543
No 428
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=57.65 E-value=1.1e+02 Score=25.32 Aligned_cols=81 Identities=11% Similarity=-0.024 Sum_probs=35.3
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCcC-hhhHHHHHHHHHHcCChHHH
Q 012804 194 KAGRLRTARWILKELGDSGHAPNA-ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD-GFGYCTVIAAFVKIGRLKEA 271 (456)
Q Consensus 194 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 271 (456)
....++.|...|.+... +.|+. .-|+.=+.++.+..+++.+..--.+.++. .|+ ......+..+......++.|
T Consensus 22 ~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred chhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHH
Confidence 33445555554444433 23333 22333444455555555555444444433 222 12222233344444555555
Q ss_pred HHHHHHH
Q 012804 272 TDYMEQM 278 (456)
Q Consensus 272 ~~~~~~~ 278 (456)
+..+.+.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 5555544
No 429
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.14 E-value=9.2 Score=32.89 Aligned_cols=93 Identities=14% Similarity=0.043 Sum_probs=49.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 012804 55 FVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRV 134 (456)
Q Consensus 55 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 134 (456)
.|.++.|++.|...++.+ ++....|..-.+++.+.++...|++=++.....+.. ...-|-.--.+....|+|++|...
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHHH
Confidence 456666666666666553 334445555556666666666666666655553211 112222222333445666666666
Q ss_pred HHHHHhCCCCCChhH
Q 012804 135 FQDMICGDLTPCTAT 149 (456)
Q Consensus 135 ~~~~~~~~~~~~~~~ 149 (456)
|....+.+..+....
T Consensus 205 l~~a~kld~dE~~~a 219 (377)
T KOG1308|consen 205 LALACKLDYDEANSA 219 (377)
T ss_pred HHHHHhccccHHHHH
Confidence 666666655444333
No 430
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=57.02 E-value=2.1e+02 Score=28.32 Aligned_cols=20 Identities=15% Similarity=-0.059 Sum_probs=14.7
Q ss_pred HHccCChhHHHHHHHHHHHc
Q 012804 398 LCKAKRLPSASKLLLSCLKS 417 (456)
Q Consensus 398 ~~~~~~~~~A~~~~~~~~~~ 417 (456)
-.-.+++.+|++.-+.|.+.
T Consensus 376 sVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 376 SVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred hhhccCHHHHHHHHHHHhcc
Confidence 34467888888888888765
No 431
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=56.82 E-value=46 Score=20.77 Aligned_cols=49 Identities=12% Similarity=0.100 Sum_probs=30.7
Q ss_pred CchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHc
Q 012804 5 LSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQ 54 (456)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 54 (456)
|+...++.+++..++..-.++++..+.++.+.|. .+..+|-.-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4455667777777777777777777777777664 455566655555543
No 432
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=56.73 E-value=1.8e+02 Score=30.67 Aligned_cols=149 Identities=15% Similarity=0.063 Sum_probs=90.8
Q ss_pred HHHcCChHHHHH------HHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------HcCCCcCHHhHHHH
Q 012804 262 FVKIGRLKEATD------YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME-------KQGFECDKYTHTIL 328 (456)
Q Consensus 262 ~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~l 328 (456)
....|.+.++.+ ++......-.+.....|..+...+.+.|+.++|+..-.... .....-+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 344455555555 44432222223456778888888999999999887655431 11112234456666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC-----------Chhh
Q 012804 329 IDGLCKAGNIKGARLHLEYMNKI-------GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----------DSFT 390 (456)
Q Consensus 329 ~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~ 390 (456)
...+...++...|...+.+.... ..||...++..+-..+...++.+.|.+..+.+... ....
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 66666677777887777776543 23455556666666666678888898888877654 3344
Q ss_pred HHHHHHHHHccCChhHHHHH
Q 012804 391 YSSMVHNLCKAKRLPSASKL 410 (456)
Q Consensus 391 ~~~l~~~~~~~~~~~~A~~~ 410 (456)
+..+.+.+...+++..|...
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHH
Confidence 55555555556665555443
No 433
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=56.07 E-value=58 Score=21.67 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHH
Q 012804 63 TILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEML 104 (456)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 104 (456)
++|+.....|+..|+..|..++....-+=-.+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 445444445555555555555554444444444445555444
No 434
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=55.96 E-value=98 Score=24.30 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=14.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 012804 329 IDGLCKAGNIKGARLHLEYMNK 350 (456)
Q Consensus 329 ~~~~~~~~~~~~a~~~~~~~~~ 350 (456)
+..|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3456666777777777666654
No 435
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=55.94 E-value=1.3e+02 Score=25.84 Aligned_cols=44 Identities=9% Similarity=-0.016 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012804 307 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 350 (456)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 350 (456)
.++++.+...++.|.-..|..+.-.+.+.=.+...+.+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 45666666666666666666666556666666666666666654
No 436
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=55.17 E-value=1.4e+02 Score=25.66 Aligned_cols=151 Identities=13% Similarity=0.045 Sum_probs=87.8
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHH----
Q 012804 193 CKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR----NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK---- 264 (456)
Q Consensus 193 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 264 (456)
...+++..+...+......+. ......+...|.. ..+...|..++....+.+.+ .....+...|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv 125 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGV 125 (292)
T ss_pred cccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCc
Confidence 356678888888888776432 2444444444443 34578899999877776632 233334444544
Q ss_pred cCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh---
Q 012804 265 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG-------KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK--- 334 (456)
Q Consensus 265 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 334 (456)
..+..+|..++++....|..+.......+...|..-. +...|...+.++...+ +......+...|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCC
Confidence 3488899999999988875543222334444443321 2235667777666654 33333344433322
Q ss_pred -cCCHHHHHHHHHHHHhCC
Q 012804 335 -AGNIKGARLHLEYMNKIG 352 (456)
Q Consensus 335 -~~~~~~a~~~~~~~~~~~ 352 (456)
..+.++|..+|....+.|
T Consensus 203 v~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 335667777777777665
No 437
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=54.61 E-value=62 Score=21.62 Aligned_cols=13 Identities=15% Similarity=0.442 Sum_probs=5.0
Q ss_pred CChhHHHHHHHHH
Q 012804 126 GKPDEANRVFQDM 138 (456)
Q Consensus 126 ~~~~~a~~~~~~~ 138 (456)
|+.+.|.+++..+
T Consensus 50 g~~~~ar~LL~~L 62 (88)
T cd08819 50 GNESGARELLKRI 62 (88)
T ss_pred CcHHHHHHHHHHh
Confidence 3333333333333
No 438
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=54.24 E-value=32 Score=27.92 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=40.0
Q ss_pred HHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 012804 366 RLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 419 (456)
Q Consensus 366 ~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 419 (456)
+..+.|+.+.|.+++.++... ....|..+...--+.|+.+.|.+.+++.++.++
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 345677788888888877766 556677777777778888888888888876643
No 439
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=53.23 E-value=28 Score=31.67 Aligned_cols=50 Identities=12% Similarity=-0.128 Sum_probs=20.7
Q ss_pred HHHhCCCHHHHHHHHHHhccCCh---hhHHHHHHHHHccCChhHHHHHHHHHH
Q 012804 366 RLGKDGKIDHAINVFESMEVKDS---FTYSSMVHNLCKAKRLPSASKLLLSCL 415 (456)
Q Consensus 366 ~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~ 415 (456)
++.+.+++..|+.=+..+++.++ ..|..-+.++...+++.+|...|+...
T Consensus 47 a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~ 99 (476)
T KOG0376|consen 47 AHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVK 99 (476)
T ss_pred hheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhh
Confidence 44444444444444444444321 122222233344444445555554444
No 440
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=53.20 E-value=1.1e+02 Score=24.42 Aligned_cols=63 Identities=10% Similarity=-0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHh
Q 012804 8 RLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMRE 70 (456)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 70 (456)
...+.++..+..+||++.|-+.|--+++.....=...|..-+..+.+.+.-....+.++.+..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
No 441
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.00 E-value=53 Score=22.50 Aligned_cols=29 Identities=3% Similarity=-0.203 Sum_probs=16.1
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 012804 387 DSFTYSSMVHNLCKAKRLPSASKLLLSCL 415 (456)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 415 (456)
.+.....|.-.|.+.|+.+.|.+-|+.-.
T Consensus 71 pPG~HAhLGlLys~~G~~e~a~~eFetEK 99 (121)
T COG4259 71 PPGYHAHLGLLYSNSGKDEQAVREFETEK 99 (121)
T ss_pred CCcHHHHHHHHHhhcCChHHHHHHHHHhh
Confidence 33444555555666666666666655443
No 442
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=52.52 E-value=2.5e+02 Score=28.04 Aligned_cols=97 Identities=7% Similarity=-0.013 Sum_probs=53.5
Q ss_pred chHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHH---HHccCChhHHHHHHHHHHhCCCCCCHhHHHH
Q 012804 6 STRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDA---YCQFVSFDAGYTILNRMREAGISPDVVTYNS 82 (456)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (456)
+...+..||..+.+.|++++....-..|.+.-+ .++..|-.-+.- ....+....+..+|++....-. ++..|.-
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~p-l~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~--~v~iw~e 188 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAP-LPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN--SVPIWEE 188 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc--cchHHHH
Confidence 444566677777788887777776666666543 344444443332 2334566667777776664422 2333333
Q ss_pred HHHHH-------HcCCChhHHHHHHHHHHH
Q 012804 83 LIAGA-------TRNSLLSCSLDLLDEMLE 105 (456)
Q Consensus 83 l~~~~-------~~~~~~~~a~~~~~~~~~ 105 (456)
.+..+ ...++++....+|++.+.
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHh
Confidence 33222 233556666667766654
No 443
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.32 E-value=14 Score=26.95 Aligned_cols=31 Identities=26% Similarity=0.527 Sum_probs=19.1
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 012804 54 QFVSFDAGYTILNRMREAGISPDVVTYNSLIAG 86 (456)
Q Consensus 54 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (456)
..|.-..|..+|.+|.+.|.+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345556677777777777766653 5555543
No 444
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=51.82 E-value=44 Score=28.51 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 012804 150 FNIMLNGLCKNRYTDNALRMFRGLQKHGFV 179 (456)
Q Consensus 150 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 179 (456)
|+..|....+.||+++|+.++++..+.|..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345566666666666666666666666554
No 445
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.34 E-value=1.9e+02 Score=26.15 Aligned_cols=160 Identities=13% Similarity=0.080 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC---------CCCC
Q 012804 148 ATFNIMLNGLCKNRYTDNALRMFRGLQKHG--FVPELVTYNILIKGLCKAGRLRTARWILKELGDSG---------HAPN 216 (456)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~ 216 (456)
..+.-+...|...|+++.|++.|.+..+-- .+-....|-.+|..-.-.|+|.....+..+..... +.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 456778889999999999999998865431 12234556667777777888888777776665531 2223
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHcC------CCcChhhHHHHHHHHHHcCChHHHHH-----HHHHHHHCCCcc
Q 012804 217 AITYTTIMKCCFRNRKYKLGLEILSAMKRKG------YTFDGFGYCTVIAAFVKIGRLKEATD-----YMEQMVTDGVQL 285 (456)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~-----~~~~~~~~~~~~ 285 (456)
...+..+...+. +++..|.+.|-...... +.|...+....+.++..-++-+--.. .|+...+ .
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle----l 304 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE----L 304 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh----c
Confidence 333444443333 35555555443332111 12333333333333333332222111 2222222 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012804 286 DIVSYNTLINLYCKEGKLEAAYLLLDEMEK 315 (456)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 315 (456)
.+..+..+..-| .+++..++++++++..
T Consensus 305 ~Pqlr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 305 EPQLREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred ChHHHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 333344443333 4678888888888764
No 446
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=50.59 E-value=2.2e+02 Score=26.63 Aligned_cols=95 Identities=12% Similarity=0.056 Sum_probs=67.6
Q ss_pred CCCH-HHHHHHHHHHHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHc--cCChhHHHHHHHHHHHc-CCCCCHHhH
Q 012804 354 DSNL-EAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCK--AKRLPSASKLLLSCLKS-GVRILKSAQ 426 (456)
Q Consensus 354 ~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~-~~~~~~~~~ 426 (456)
.|+. ..-+.++..+.+.|-..+|..++.+.... +...+..++..-.. .-+...+.++++.|... | .|+..|
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw 533 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLW 533 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHH
Confidence 3443 34466778888899999999999988776 44555555543322 33477888999998776 5 588888
Q ss_pred HHHHHHHHccCChHHHHHHHHHHH
Q 012804 427 KAVVDGLRHSGCRREAKKIQSKIR 450 (456)
Q Consensus 427 ~~l~~~~~~~g~~~~A~~~~~~~~ 450 (456)
.....--...|..+.+-.++.+..
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHH
Confidence 888877778888877766655543
No 447
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=50.58 E-value=3.1e+02 Score=28.47 Aligned_cols=154 Identities=12% Similarity=0.006 Sum_probs=84.0
Q ss_pred CcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCcCHHhHHH
Q 012804 249 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA-AYLLLDEMEKQGFECDKYTHTI 327 (456)
Q Consensus 249 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~ 327 (456)
.++...-...+.++...+..+. +..... .++..+-...+.++...+..+. +...+..+.. .++...-..
T Consensus 725 D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~a 794 (897)
T PRK13800 725 DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAA 794 (897)
T ss_pred CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHH
Confidence 4455555555555555544322 222222 2455556666666666665432 3344444443 346666677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhc-cCChhhHHHHHHHHHccCChhH
Q 012804 328 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-VKDSFTYSSMVHNLCKAKRLPS 406 (456)
Q Consensus 328 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 406 (456)
.+.++...|..+.+...+..+.+ .++..+-...+.++.+.+.. ++...+..+. ..+..+-...+.++.+.+....
T Consensus 795 A~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~~-~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~ 870 (897)
T PRK13800 795 ALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAAD-VAVPALVEALTDPHLDVRKAAVLALTRWPGDPA 870 (897)
T ss_pred HHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhcccc-chHHHHHHHhcCCCHHHHHHHHHHHhccCCCHH
Confidence 77777777765554444444443 23555555566666666653 3444444444 3366666666777766544456
Q ss_pred HHHHHHHHHH
Q 012804 407 ASKLLLSCLK 416 (456)
Q Consensus 407 A~~~~~~~~~ 416 (456)
+...+..+++
T Consensus 871 a~~~L~~al~ 880 (897)
T PRK13800 871 ARDALTTALT 880 (897)
T ss_pred HHHHHHHHHh
Confidence 6667766664
No 448
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=50.50 E-value=1.9e+02 Score=26.07 Aligned_cols=141 Identities=10% Similarity=-0.050 Sum_probs=0.0
Q ss_pred cCCCcCHHhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--------HHHhCCCHHHHHHHHHHhcc
Q 012804 316 QGFECDKYTHTILIDGLCKA--GNIKGARLHLEYMNKIGFDSNLEAYNCIVD--------RLGKDGKIDHAINVFESMEV 385 (456)
Q Consensus 316 ~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~g~~~~a~~~~~~~~~ 385 (456)
..+.+....|..++-.+.-. +++.+|..+-+.....-...|..++..+.. .|...|+...-...+.....
T Consensus 118 k~~~~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lr 197 (493)
T KOG2581|consen 118 KPLPAEIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLR 197 (493)
T ss_pred CCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q ss_pred C---------ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH---HhHHHHHHHHHccCChHHHHHHHHHHHhcc
Q 012804 386 K---------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK---SAQKAVVDGLRHSGCRREAKKIQSKIRMAK 453 (456)
Q Consensus 386 ~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 453 (456)
. .....+.+++.|...+.++.|.++..+..--.-..+. .-+..++..-.-++++..|.+.+-...+..
T Consensus 198 tAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 198 TATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Q ss_pred cCC
Q 012804 454 ISH 456 (456)
Q Consensus 454 ~~~ 456 (456)
+.|
T Consensus 278 pq~ 280 (493)
T KOG2581|consen 278 PQH 280 (493)
T ss_pred cch
No 449
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=50.31 E-value=1.8e+02 Score=25.63 Aligned_cols=47 Identities=9% Similarity=0.146 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 012804 388 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 434 (456)
Q Consensus 388 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 434 (456)
...|..+++.....|.+++++.+|++++..|-.|-...-..++..+-
T Consensus 140 aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 140 AKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34577777888888888888888888888888877766666666654
No 450
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.85 E-value=2.7e+02 Score=28.19 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012804 286 DIVSYNTLINLYCKEGKLEAAYLLLDEM 313 (456)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 313 (456)
+..+|..|.......|+.+-|...|++.
T Consensus 671 d~d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 671 DKDVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 3444444444444444444444444333
No 451
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=49.83 E-value=82 Score=28.87 Aligned_cols=110 Identities=11% Similarity=-0.022 Sum_probs=70.0
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcC
Q 012804 11 NICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRN 90 (456)
Q Consensus 11 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 90 (456)
-.-+..+...+.++.|+.++.++++..+. .+..|..-..++.+.+++..|+.=+..+.+.. +--...|..-..++...
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMAL 85 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhH
Confidence 34456677888999999999999886532 33344444477888889988888777777653 11233333334445555
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 012804 91 SLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQ 124 (456)
Q Consensus 91 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 124 (456)
+.+.+|...|+.... +.|+..-....+.-|-+
T Consensus 86 ~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 666677777766655 45666666555554443
No 452
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=49.36 E-value=3.4e+02 Score=28.84 Aligned_cols=102 Identities=17% Similarity=0.096 Sum_probs=48.5
Q ss_pred CCCHhHHHHHHHHHHcCCChhHHHHHHHHHH-------HCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-----
Q 012804 74 SPDVVTYNSLIAGATRNSLLSCSLDLLDEML-------EMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICG----- 141 (456)
Q Consensus 74 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 141 (456)
++....|..+...+-+.++.++|+..-.... ..+.+-+...|..+.......+....|...+.+....
T Consensus 970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ 1049 (1236)
T KOG1839|consen 970 PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSS 1049 (1236)
T ss_pred hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcccc
Confidence 3345566666666667777766665543321 1111223334444444444555555555555544321
Q ss_pred --CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 012804 142 --DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQK 175 (456)
Q Consensus 142 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 175 (456)
..||...+++.+-..+...+..+.|+++++.+..
T Consensus 1050 ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1050 GEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred CCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1133333333333333334555556655555543
No 453
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=48.08 E-value=1.7e+02 Score=24.72 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 012804 356 NLEAYNCIVDRLGKDGKIDHAINVFESM 383 (456)
Q Consensus 356 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 383 (456)
++.....+...|.+.|++.+|+..|-..
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 4666777777888888888887776443
No 454
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=47.98 E-value=47 Score=20.74 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=19.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012804 321 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 365 (456)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 365 (456)
....++.++..+++..-.+.++..+.++...| ..+...|..-++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR 50 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVR 50 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 33344444444444444455555555554444 233344433333
No 455
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=47.56 E-value=1.8e+02 Score=28.27 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=50.1
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCC--CCCCHhHHHHHHHHHHcCCChh------HHHHHHHHHHHCCCCCCHHhHHHH
Q 012804 47 MLIDAYCQFVSFDAGYTILNRMREAG--ISPDVVTYNSLIAGATRNSLLS------CSLDLLDEMLEMGIPPDVWSYNSL 118 (456)
Q Consensus 47 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 118 (456)
+++.+|...|++..+.++++.....+ -+.-...||..++...+.|.++ .+.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78889999999999999888887542 2223456788888888888754 3344444433 34477777776
Q ss_pred HHHHHh
Q 012804 119 MHCLFQ 124 (456)
Q Consensus 119 ~~~~~~ 124 (456)
+..-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665444
No 456
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.43 E-value=3.7e+02 Score=28.39 Aligned_cols=120 Identities=10% Similarity=-0.063 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHhccC--ChhhHHHHHHHH
Q 012804 325 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSN----LEAYNCIVDRLGKDGKIDHAINVFESMEVK--DSFTYSSMVHNL 398 (456)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~ 398 (456)
|..+++.+.+.+-.+.+.++-..+++. .+++ ..+++.+.......|.+-+|.+.+-+.... .......++..+
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivL 1064 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVL 1064 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 555666666667777777776666654 2222 334555666666777777776665443332 233444555555
Q ss_pred HccCChh------------HHHH-HHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHH
Q 012804 399 CKAKRLP------------SASK-LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 445 (456)
Q Consensus 399 ~~~~~~~------------~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 445 (456)
...|.++ +... +++..-...+-.....|..+..-+...+++.+|-.+
T Consensus 1065 fecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1065 FECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 5555433 3333 333332222222333444444455666777776554
No 457
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=47.04 E-value=1.8e+02 Score=24.59 Aligned_cols=47 Identities=4% Similarity=-0.204 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 012804 305 AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 352 (456)
Q Consensus 305 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 352 (456)
.-+++.+.|....-+ +-.+|..--.++..-+.++.-+.+..++++.+
T Consensus 131 rELef~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~D 177 (318)
T KOG0530|consen 131 RELEFTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEED 177 (318)
T ss_pred chHHHHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 344444444442211 33344444444444444555555555555443
No 458
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.00 E-value=1.1e+02 Score=22.26 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHcCCCC-CHHhHHHHHHHHHccCChHHHHHHHHH
Q 012804 406 SASKLLLSCLKSGVRI-LKSAQKAVVDGLRHSGCRREAKKIQSK 448 (456)
Q Consensus 406 ~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 448 (456)
++.++|+.|...|+-. -+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7888888888775533 456777888888888999999888875
No 459
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=46.90 E-value=86 Score=20.99 Aligned_cols=35 Identities=20% Similarity=0.206 Sum_probs=15.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH
Q 012804 334 KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 373 (456)
Q Consensus 334 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 373 (456)
..|+.+.|.+++..+. .| | ..|..++.++...|.-
T Consensus 48 ~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 48 NHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHH 82 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCch
Confidence 3345555555555544 22 1 2344444444444443
No 460
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.88 E-value=1.7e+02 Score=24.37 Aligned_cols=107 Identities=13% Similarity=-0.080 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH------cCCCcCHH-----------hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012804 287 IVSYNTLINLYCKEGKLEAAYLLLDEMEK------QGFECDKY-----------THTILIDGLCKAGNIKGARLHLEYMN 349 (456)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~ 349 (456)
..+...-.+-+.+.|++.+|..-|.+... ..-+|... .+....+++...|++-++++.-..++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 44455556678889999999999887531 11123222 23334455567788889998888888
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccCChhhHHHH
Q 012804 350 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSM 394 (456)
Q Consensus 350 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 394 (456)
... +.|...|-.-..+.+..=+.++|..-|..+...++..-..+
T Consensus 258 ~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 258 RHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred hcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 763 66777777666777777788899999988888766554443
No 461
>PRK09857 putative transposase; Provisional
Probab=46.16 E-value=2e+02 Score=24.89 Aligned_cols=66 Identities=17% Similarity=0.091 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 012804 80 YNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPC 146 (456)
Q Consensus 80 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 146 (456)
+..++....+.++.++..++++.+.+. .+.......++..-+.+.|.-+++.++..+|...|+..+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 444555555556666666666666554 222333344555666666666677777777777775543
No 462
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=45.97 E-value=1.2e+02 Score=23.42 Aligned_cols=57 Identities=5% Similarity=-0.038 Sum_probs=32.2
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC----ChhhHHHHHHHHHccCChh
Q 012804 348 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLP 405 (456)
Q Consensus 348 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~ 405 (456)
+...|+..+..-. .++..+...++.-.|.++++.+.+. +..+...-+..+.+.|-..
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 4455666554433 3344444455566777777777655 4445555566666666544
No 463
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.56 E-value=3.4e+02 Score=27.55 Aligned_cols=72 Identities=17% Similarity=0.162 Sum_probs=40.8
Q ss_pred HhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHH
Q 012804 228 FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 307 (456)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 307 (456)
...|+.+.|++....+ .+..+|..+.......|+.+-|+..|+.... |..|-..|.-.|+.++-.
T Consensus 654 Le~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred hhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHH
Confidence 3456666655543322 2455666777777777777777766665543 333444455566666655
Q ss_pred HHHHHHH
Q 012804 308 LLLDEME 314 (456)
Q Consensus 308 ~~~~~~~ 314 (456)
++.+...
T Consensus 719 Km~~iae 725 (1202)
T KOG0292|consen 719 KMMKIAE 725 (1202)
T ss_pred HHHHHHH
Confidence 5555443
No 464
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=45.54 E-value=70 Score=22.66 Aligned_cols=41 Identities=17% Similarity=0.141 Sum_probs=19.4
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccC
Q 012804 397 NLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 437 (456)
Q Consensus 397 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 437 (456)
.+...+..-.|.++++++.+.++..+..|....+..+...|
T Consensus 9 ~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 9 VLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 33333444445555555555444444444444444444444
No 465
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=45.18 E-value=1.3e+02 Score=22.38 Aligned_cols=67 Identities=10% Similarity=0.037 Sum_probs=33.9
Q ss_pred CCHhHHHHHHHHHHcCCC---hhHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012804 75 PDVVTYNSLIAGATRNSL---LSCSLDLLDEMLEM-GIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICG 141 (456)
Q Consensus 75 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 141 (456)
++..+--.+..++.+..+ ..+.+.+++++.+. ...........|.-++.+.++++.+.++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 344444444455554433 44455666666642 12222223334445566666677776666666654
No 466
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.87 E-value=2.2e+02 Score=27.52 Aligned_cols=93 Identities=13% Similarity=0.000 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhccC---------ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHH
Q 012804 357 LEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 427 (456)
Q Consensus 357 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 427 (456)
......-..-..+..++..+.+.|..-... -......+.-+|....+.+.|.++++++-+.+++ ++.+--
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~ 432 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQL 432 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHH
Q ss_pred HHHHHHHccCChHHHHHHHHHHH
Q 012804 428 AVVDGLRHSGCRREAKKIQSKIR 450 (456)
Q Consensus 428 ~l~~~~~~~g~~~~A~~~~~~~~ 450 (456)
.+..+....|+-++|.....++.
T Consensus 433 ~~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 433 LMLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHHHHHhcchHHHHHHHHHHH
No 467
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=44.23 E-value=2e+02 Score=24.52 Aligned_cols=31 Identities=6% Similarity=0.083 Sum_probs=19.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 012804 118 LMHCLFQLGKPDEANRVFQDMICGDLTPCTA 148 (456)
Q Consensus 118 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 148 (456)
+.+-..+.+++++|+..+.++...|+..+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek 39 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEK 39 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhh
Confidence 4455566677777777777777766555443
No 468
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=43.83 E-value=51 Score=23.36 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=21.8
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCCh
Q 012804 49 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLL 93 (456)
Q Consensus 49 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 93 (456)
+..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 334444444445555555555554444444444444555554443
No 469
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=43.78 E-value=2e+02 Score=24.31 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=11.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHH
Q 012804 146 CTATFNIMLNGLCKNRYTDNALRMF 170 (456)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~a~~~~ 170 (456)
++.....+...+.+.|++.+|...|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3444444555555555555554443
No 470
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=42.88 E-value=2.5e+02 Score=25.19 Aligned_cols=103 Identities=12% Similarity=0.037 Sum_probs=54.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHH-HhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHH
Q 012804 294 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL-CKAGNIKGARLHLEYMNKI------GFDSNLEAYNCIVDR 366 (456)
Q Consensus 294 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~ 366 (456)
+..+.+.|.+..|.++.+-+...+..-|+......|..| .+.++++-.+++.+..... ..-|+. .|+..+ +
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~-a~S~aL-A 187 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNF-AFSIAL-A 187 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccH-HHHHHH-H
Confidence 345566677777777777776654443555555555544 4556666666666654331 112332 222222 2
Q ss_pred HHhCCCH---------------HHHHHHHHHhccCChhhHHHHHHHH
Q 012804 367 LGKDGKI---------------DHAINVFESMEVKDSFTYSSMVHNL 398 (456)
Q Consensus 367 ~~~~g~~---------------~~a~~~~~~~~~~~~~~~~~l~~~~ 398 (456)
+...++. +.|.+.+.++...-+.+...|+..+
T Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~~l 234 (360)
T PF04910_consen 188 YFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLDKL 234 (360)
T ss_pred HHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 3333333 6677777766666566655555554
No 471
>PRK12798 chemotaxis protein; Reviewed
Probab=42.84 E-value=2.6e+02 Score=25.42 Aligned_cols=156 Identities=13% Similarity=0.025 Sum_probs=76.4
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCchhHH
Q 012804 160 NRYTDNALRMFRGLQKHGFVPELVTYNILIKGL-CKAGRLRTARWILKELGDS--GHAPNAITYTTIMKCCFRNRKYKLG 236 (456)
Q Consensus 160 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a 236 (456)
.|+..++.+.+..+.....++....+-.|+.+- ....+...|+.+|+...-. |.-........-+......|+.++.
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 566777777776666655566666666655443 3345677777777765432 1111122233334445566777666
Q ss_pred HHHHHHHHHcC-CCc-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012804 237 LEILSAMKRKG-YTF-DGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 313 (456)
Q Consensus 237 ~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 313 (456)
..+-.+..+.- ..| -...+..+...+.+.++-..-.. +..++.. ...--...|..+.+.-.-.|+.+-|...-.+.
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~-l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A 283 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDAR-LVEILSFMDPERQRELYLRIARAALIDGKTELARFASERA 283 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHH-HHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 65555544331 111 11222223333333332221111 2222222 11223456666666667777777776666665
Q ss_pred HHc
Q 012804 314 EKQ 316 (456)
Q Consensus 314 ~~~ 316 (456)
...
T Consensus 284 ~~L 286 (421)
T PRK12798 284 LKL 286 (421)
T ss_pred HHh
Confidence 543
No 472
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=42.17 E-value=55 Score=17.42 Aligned_cols=20 Identities=10% Similarity=0.167 Sum_probs=10.6
Q ss_pred HHHHHHHHHccCChhHHHHH
Q 012804 391 YSSMVHNLCKAKRLPSASKL 410 (456)
Q Consensus 391 ~~~l~~~~~~~~~~~~A~~~ 410 (456)
+..++..+...|++++|+++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 34445555556666666666
No 473
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=42.14 E-value=1.2e+02 Score=21.28 Aligned_cols=60 Identities=3% Similarity=-0.038 Sum_probs=32.9
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccC--ChhHHHHHHHHHHhCC
Q 012804 11 NICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFV--SFDAGYTILNRMREAG 72 (456)
Q Consensus 11 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~ 72 (456)
..++..|...|+.++|...+.++... .........++..+...+ .-+....++..+.+.+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~ 67 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRK 67 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcC
Confidence 45677888889999999999875321 112223344444444332 2233455566666554
No 474
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=41.80 E-value=51 Score=17.10 Aligned_cols=26 Identities=4% Similarity=-0.143 Sum_probs=18.6
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHhHHHHH
Q 012804 403 RLPSASKLLLSCLKSGVRILKSAQKAVV 430 (456)
Q Consensus 403 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 430 (456)
.++.|..+|++.+.. .|+..+|...+
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHHHH
Confidence 467888899988865 46777776543
No 475
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=41.45 E-value=1.7e+02 Score=24.06 Aligned_cols=25 Identities=12% Similarity=0.212 Sum_probs=14.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC
Q 012804 294 INLYCKEGKLEAAYLLLDEMEKQGF 318 (456)
Q Consensus 294 ~~~~~~~~~~~~a~~~~~~~~~~~~ 318 (456)
+-.....|+++.|+++.+-++++|.
T Consensus 90 mvW~~D~Gd~~~AL~ia~yAI~~~l 114 (230)
T PHA02537 90 MVWRFDIGDFDGALEIAEYALEHGL 114 (230)
T ss_pred eeeeeeccCHHHHHHHHHHHHHcCC
Confidence 3334455666666666666666554
No 476
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=41.20 E-value=1.2e+02 Score=21.49 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=14.7
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCC
Q 012804 48 LIDAYCQFVSFDAGYTILNRMREAG 72 (456)
Q Consensus 48 l~~~~~~~~~~~~a~~~~~~~~~~~ 72 (456)
++..+.++...++|+++++.|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4455555566666666666666555
No 477
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=40.66 E-value=73 Score=22.79 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=32.8
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCC
Q 012804 393 SMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 438 (456)
Q Consensus 393 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 438 (456)
.++..+...+..-.|.++++.+.+.++..+..|....+..+...|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 4566666666778888899888888877777777777777776664
No 478
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=40.61 E-value=66 Score=20.76 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=26.7
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccC
Q 012804 399 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 437 (456)
Q Consensus 399 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 437 (456)
...++.+++.+++++..+.|..|.......+.-+....|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 457888999999999998887777665554554444433
No 479
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=38.78 E-value=1.4e+02 Score=21.05 Aligned_cols=17 Identities=12% Similarity=-0.021 Sum_probs=6.7
Q ss_pred hcCChHHHHHHHHHHHh
Q 012804 159 KNRYTDNALRMFRGLQK 175 (456)
Q Consensus 159 ~~~~~~~a~~~~~~~~~ 175 (456)
+.|-.+++...+.++..
T Consensus 81 klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 81 KLGLASALESRLTRLAS 97 (116)
T ss_dssp HCT-HHHHHHHHHHHCT
T ss_pred hhccHHHHHHHHHHHHh
Confidence 34444444444444433
No 480
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=38.75 E-value=1.5e+02 Score=21.53 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHH
Q 012804 340 GARLHLEYMNKIGFDSN-LEAYNCIVDRLGKDGKIDHAINVFES 382 (456)
Q Consensus 340 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 382 (456)
.+..+|..|...|+... +..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 56666666655544332 44555555556666666666666653
No 481
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=38.27 E-value=1.5e+02 Score=25.65 Aligned_cols=66 Identities=5% Similarity=0.012 Sum_probs=33.8
Q ss_pred CchHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHH-HHHHHHccCChhHHHHHHHHHHhC
Q 012804 5 LSTRLLNICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNM-LIDAYCQFVSFDAGYTILNRMREA 71 (456)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~ 71 (456)
.|+..|...+..-.+.|.+.+.-.++.++.+.+| .|+..|-. --.-+...++++.+..+|....+.
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP-~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHP-LNVDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 3455555555555555666666666666655543 24444332 112233445555666666555544
No 482
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=38.15 E-value=55 Score=23.44 Aligned_cols=48 Identities=10% Similarity=0.110 Sum_probs=26.7
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCCh
Q 012804 46 NMLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLL 93 (456)
Q Consensus 46 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 93 (456)
..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 345555555555666667777776666555555544455555555543
No 483
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=37.99 E-value=69 Score=17.36 Aligned_cols=28 Identities=7% Similarity=-0.001 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHh
Q 012804 8 RLLNICVCTFCKANRLEKAEAIIIDGIR 35 (456)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 35 (456)
.+|..|...-...++|++|.+=|..+++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3566666667777777777766666543
No 484
>PRK13342 recombination factor protein RarA; Reviewed
Probab=37.82 E-value=3.3e+02 Score=25.05 Aligned_cols=22 Identities=18% Similarity=-0.070 Sum_probs=11.1
Q ss_pred CchhHHHHHHHHHHHcCCCcCh
Q 012804 231 RKYKLGLEILSAMKRKGYTFDG 252 (456)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~~~~ 252 (456)
.+++.|+.++..|.+.|..|..
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~ 265 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLF 265 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 4455555555555555544443
No 485
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=35.97 E-value=86 Score=25.68 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=48.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccCChh
Q 012804 331 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF 389 (456)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 389 (456)
...+.++.+.+.+++.++...- +.....|-.+...-.+.|+++.|.+.|++..+.++.
T Consensus 4 ~~~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 3467789999999999998863 556778888888899999999999999998887544
No 486
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.90 E-value=4e+02 Score=25.53 Aligned_cols=154 Identities=12% Similarity=0.048 Sum_probs=86.0
Q ss_pred cCChHHHHHHHHHHHhCCCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHH-------HhhCCCCC-----
Q 012804 160 NRYTDNALRMFRGLQKHGFVP------------ELVTYNILIKGLCKAGRLRTARWILKE-------LGDSGHAP----- 215 (456)
Q Consensus 160 ~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~~~~~~~----- 215 (456)
...++++...|...... ..| -+.+.-.+..++..+|+.+.+-.++++ +....+.|
T Consensus 251 s~sYeqaq~~F~~av~~-~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIV-HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred chHHHHHHHHHHHHHhh-cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 44566677666655543 111 233444555667777776655554443 33322221
Q ss_pred --------CHHHHHH---HHHHHHhcCchhHHHHHHHHHHHcCCCcChhhHHHHHHHHH-HcCChHHHHHHHHHHHHC--
Q 012804 216 --------NAITYTT---IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV-KIGRLKEATDYMEQMVTD-- 281 (456)
Q Consensus 216 --------~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~-- 281 (456)
+...|.. -+....+.|-+..|.++.+.+.......|+.....+|..|+ +..++.-.+++++.....
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 2222222 24555678888888888888887765557777777777664 556777777777766543
Q ss_pred -CCccCHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 012804 282 -GVQLDIVSYNTLINLYCKEGK---LEAAYLLLDEME 314 (456)
Q Consensus 282 -~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~ 314 (456)
..-|+..--.+++..|..... ...|...+.++.
T Consensus 410 l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 410 LSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQAL 446 (665)
T ss_pred HhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 223444433455555555444 344555544443
No 487
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=35.50 E-value=2.5e+02 Score=23.14 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=10.0
Q ss_pred CChhHHHHHHHHHHHcC
Q 012804 402 KRLPSASKLLLSCLKSG 418 (456)
Q Consensus 402 ~~~~~A~~~~~~~~~~~ 418 (456)
++...|..+++++.+.+
T Consensus 192 ~~l~~Al~~L~rA~~l~ 208 (230)
T PHA02537 192 ETLQLALALLQRAFQLN 208 (230)
T ss_pred ccHHHHHHHHHHHHHhC
Confidence 45556666666666553
No 488
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=35.39 E-value=2.8e+02 Score=25.21 Aligned_cols=211 Identities=11% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhC--CCCCCHhHHHHHHHHHH
Q 012804 11 NICVCTFCKANRLEKAEAIIIDGIRLGVLPDVVTYNMLIDAYCQFVSFDAGYTILNRMREA--GISPDVVTYNSLIAGAT 88 (456)
Q Consensus 11 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~ 88 (456)
+..+.++...++++.....|-...-.. .....+.--|++...-.|+++...+.++.+.+. |..|....--.+.-+|.
T Consensus 205 ~~ql~~~~s~~dp~~va~~~g~s~~y~-~LgyfsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayL 283 (525)
T KOG3677|consen 205 SIQLTASVSNKDPALVALIFGASQPYA-NLGYFSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYL 283 (525)
T ss_pred HHHHHHHhcCCChhhhhhhhccccHHH-hhhHHHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHH
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCChhHHHHHHHHHH-------hc
Q 012804 89 RNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK-PDEANRVFQDMICGDLTPCTATFNIMLNGLC-------KN 160 (456)
Q Consensus 89 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~ 160 (456)
-.+++.+|.+.|-...-. ++.+...+...--.|...+. .+....++.........--.+++...+.-++ .+
T Consensus 284 mmrryadai~~F~niLly-Iqrtks~~~~~~y~~d~inKq~eqm~~llai~l~~yPq~iDESi~s~l~Ek~~d~ml~mqn 362 (525)
T KOG3677|consen 284 MMRRYADAIRVFLNILLY-IQRTKSMFSRTTYQYDMINKQNEQMHHLLAICLSMYPQMIDESIHSQLAEKYGDKMLPMQN 362 (525)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhhcchhhhHhhhhhhHHHHHHHHHHHHHhCchhhhHHHHHHHHHHhcchhhhhhc
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 012804 161 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 223 (456)
Q Consensus 161 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 223 (456)
|+.+.-..+|--....-+.|....|..++..|.+.--..+....++......--|....|..+
T Consensus 363 g~~q~~ks~f~y~cpkflsp~~~~~dgv~~~y~kePl~~qlq~fld~v~qq~dl~~~rsylkl 425 (525)
T KOG3677|consen 363 GDPQVFKSLFSYLCPKFLSPVVPNYDGVLPNYHKEPLLQQLQVFLDEVSQQADLPTIRSYLKL 425 (525)
T ss_pred CChHHHHHHHHHcCccccCCCCcccccccccccccHHHHHHHHHhHHHhhhccchHHHHHHHH
No 489
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.33 E-value=4.1e+02 Score=25.48 Aligned_cols=54 Identities=17% Similarity=0.240 Sum_probs=30.1
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 012804 261 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC-KEGKLEAAYLLLDEME 314 (456)
Q Consensus 261 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 314 (456)
.+.+.|-+..|.++.+.+.+..+.-|+.....+|..|+ +..++.--+++++...
T Consensus 351 ~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455666666666666666544445555555555554 3445555555555553
No 490
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=35.23 E-value=3.1e+02 Score=26.04 Aligned_cols=57 Identities=23% Similarity=0.250 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhccC-----ChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 012804 361 NCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 417 (456)
Q Consensus 361 ~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 417 (456)
..++.-|.+.+++++|..++..|.=. --...+.++..+.+..-.++.+..++.++..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 44556677777777777777766432 1123334445555554445555555665543
No 491
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=34.72 E-value=3e+02 Score=23.74 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=27.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 012804 153 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 210 (456)
Q Consensus 153 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 210 (456)
++....+.++..+..+.++.+.. ...-...+......|++..|++++....+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444444444455555544432 22333445556667777777776665543
No 492
>PRK09462 fur ferric uptake regulator; Provisional
Probab=34.71 E-value=2e+02 Score=21.63 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=15.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 012804 92 LLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLG 126 (456)
Q Consensus 92 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 126 (456)
..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555555444334433333334444443
No 493
>PF07827 KNTase_C: KNTase C-terminal domain; InterPro: IPR012481 Kanamycin nucleotidyltransferase (KNTase) is involved in conferring resistance to aminoglycoside antibiotics and catalyses the transfer of a nucleoside monophosphate group from a nucleotide to kanamycin. This enzyme is dimeric with each subunit being composed of two domains. The C-terminal domain contains five alpha helices, four of which are organised into an up-and-down alpha helical bundle. Residues found in this domain may contribute to this enzyme's active site []. ; GO: 0016779 nucleotidyltransferase activity, 0046677 response to antibiotic; PDB: 1KNY_A.
Probab=34.04 E-value=1.6e+02 Score=21.78 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=20.8
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 012804 391 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 449 (456)
Q Consensus 391 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 449 (456)
+.+++.++.....+..-..++.+.++..-.| .-|..+.. ....|++.++.++++..
T Consensus 62 ~~AmliGL~Nr~~ytT~a~~l~Eal~Lp~rP--~Gyd~l~~-lvm~G~L~d~~~i~~~c 117 (143)
T PF07827_consen 62 YGAMLIGLHNRTLYTTSARVLPEALSLPSRP--SGYDELAQ-LVMSGQLTDPEKIYESC 117 (143)
T ss_dssp HHHHHHHHHCT---SSCCCHHHHHTTSSS----TTHHHHHH-HHHHTB---HHHHHHHH
T ss_pred HHHHHHHHhccceeeccccccHHHhcCCCCC--ccHHHHHH-HHhccccCCHHHHHHHH
Confidence 3444455554444444444555555432222 22333332 22445555555554443
No 494
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=33.51 E-value=3.2e+02 Score=23.75 Aligned_cols=241 Identities=12% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcC-----chhHHHHHHHH---------HHHcCCCcC--
Q 012804 189 IKGLCKAGRLRTARWILKELGDS-GHAPNAITYTTIMKCCFRNR-----KYKLGLEILSA---------MKRKGYTFD-- 251 (456)
Q Consensus 189 ~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~---------~~~~~~~~~-- 251 (456)
+.++++.|..+ ...+++-+... ...++...+..++..+.... ..+.....++. +.+.+..+.
T Consensus 45 ~~al~~~g~~~-~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 123 (324)
T PF11838_consen 45 LFALARAGRLS-YSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPG 123 (324)
T ss_dssp HHHHHHTTSS--HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--
T ss_pred HHHHHHcCCCC-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Q ss_pred hhhHHHHHHHH-HHcCC-----hHHHHHHHHHHHHCCC----ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC
Q 012804 252 GFGYCTVIAAF-VKIGR-----LKEATDYMEQMVTDGV----QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 321 (456)
Q Consensus 252 ~~~~~~l~~~~-~~~~~-----~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 321 (456)
.......++.. ....- ...|.+.|......+. ..++.....+.....+.|+.+.-..+++..... ++
T Consensus 124 ~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~ 200 (324)
T PF11838_consen 124 EDHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TS 200 (324)
T ss_dssp SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---ST
T ss_pred ccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CC
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhCCCHHHHHHHHHHhccC-------ChhhHHH
Q 012804 322 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL-GKDGKIDHAINVFESMEVK-------DSFTYSS 393 (456)
Q Consensus 322 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~-------~~~~~~~ 393 (456)
...-..++.+.+...+.+...++++.+...+..++......+.... ...-..+.+.+.+..--.. +......
T Consensus 201 ~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~ 280 (324)
T PF11838_consen 201 PEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSR 280 (324)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHH
T ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 012804 394 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 433 (456)
Q Consensus 394 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 433 (456)
++..+...-..++-.+-+++..+....+.+..-..+-.+.
T Consensus 281 ~~~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~r~l~q~~ 320 (324)
T PF11838_consen 281 VIKSFAGNFSTEEQLDELEEFFEDKPKPPPGLRRALAQSL 320 (324)
T ss_dssp HHHCCCTT--SHHHHHHHHHHHHHHCTCCCTTTHHCHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHhhCcCCChHHHHHHHHHH
No 495
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=33.28 E-value=1.4e+02 Score=20.95 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=10.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 012804 293 LINLYCKEGKLEAAYLLLDEM 313 (456)
Q Consensus 293 l~~~~~~~~~~~~a~~~~~~~ 313 (456)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 444555556666665555554
No 496
>PRK13342 recombination factor protein RarA; Reviewed
Probab=33.01 E-value=3.9e+02 Score=24.54 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=13.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHH
Q 012804 196 GRLRTARWILKELGDSGHAPNAITYT 221 (456)
Q Consensus 196 ~~~~~a~~~~~~~~~~~~~~~~~~~~ 221 (456)
.+.+.|..++..|...|..|....-.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rr 269 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARR 269 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 45555555555555555444433333
No 497
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=32.75 E-value=1.4e+02 Score=19.48 Aligned_cols=11 Identities=18% Similarity=0.172 Sum_probs=4.8
Q ss_pred HhhCcHHHHHH
Q 012804 18 CKANRLEKAEA 28 (456)
Q Consensus 18 ~~~g~~~~A~~ 28 (456)
++.|+++-...
T Consensus 5 ~~~~~~~~~~~ 15 (89)
T PF12796_consen 5 AQNGNLEILKF 15 (89)
T ss_dssp HHTTTHHHHHH
T ss_pred HHcCCHHHHHH
Confidence 44455443333
No 498
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=32.50 E-value=2.4e+02 Score=21.90 Aligned_cols=46 Identities=13% Similarity=0.074 Sum_probs=22.1
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcCCC
Q 012804 47 MLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSL 92 (456)
Q Consensus 47 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 92 (456)
.++..+...++.-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 3444444444455555666666555544444443333444444443
No 499
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.43 E-value=3.3e+02 Score=23.50 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=64.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-cCHHhHHHHHHHHHhcC
Q 012804 258 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-CDKYTHTILIDGLCKAG 336 (456)
Q Consensus 258 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 336 (456)
++....+.++.......+..+. ....-...++.+...|++..|++++.+..+.--. .....+..+-.
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~------ 171 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSS------ 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhH------
Confidence 4445555555555555555554 3334455677778899999999998887653000 01112222221
Q ss_pred CHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhccC
Q 012804 337 NIKGARLHLEYMNKI-----GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 386 (456)
Q Consensus 337 ~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (456)
++++-......+.+. -..-|+..|..+..+|.-.|+...+.+-+...-..
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~f~~ 226 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMHFTS 226 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 122222222222211 11457788899999998888777766555544444
No 500
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=31.13 E-value=1.6e+02 Score=25.38 Aligned_cols=51 Identities=20% Similarity=0.213 Sum_probs=34.0
Q ss_pred HHhCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 012804 367 LGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 417 (456)
Q Consensus 367 ~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 417 (456)
..+.|+.++|.++|+.+... ++.....++...-..++.-+|-..|-+++..
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 34678888888888877665 5555555555555566666777777766644
Done!