Query 012805
Match_columns 456
No_of_seqs 248 out of 1838
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 06:29:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012805.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012805hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 2.6E-56 5.7E-61 432.5 52.3 416 36-455 12-432 (455)
2 PRK10189 MATE family multidrug 100.0 3.6E-51 7.7E-56 400.5 55.1 415 38-455 26-451 (478)
3 PRK00187 multidrug efflux prot 100.0 2.6E-51 5.6E-56 401.5 53.0 417 36-455 5-433 (464)
4 PRK09575 vmrA multidrug efflux 100.0 4.5E-49 9.7E-54 385.2 51.3 414 37-455 8-425 (453)
5 PRK10367 DNA-damage-inducible 100.0 9.6E-49 2.1E-53 379.9 51.7 408 38-455 6-420 (441)
6 PRK01766 multidrug efflux prot 100.0 1.1E-48 2.3E-53 384.5 52.6 419 34-455 5-431 (456)
7 TIGR01695 mviN integral membra 100.0 2.1E-36 4.5E-41 301.9 50.0 402 43-455 2-417 (502)
8 TIGR00797 matE putative efflux 100.0 6.1E-37 1.3E-41 290.6 42.7 337 49-388 1-341 (342)
9 TIGR02900 spore_V_B stage V sp 100.0 5.2E-36 1.1E-40 298.1 46.0 403 44-455 2-423 (488)
10 KOG1347 Uncharacterized membra 100.0 1.6E-36 3.4E-41 291.7 30.5 418 33-451 20-437 (473)
11 PRK15099 O-antigen translocase 100.0 1.2E-33 2.6E-38 274.5 45.5 393 43-454 3-400 (416)
12 PF03023 MVIN: MviN-like prote 100.0 1.1E-28 2.4E-33 239.9 48.3 374 71-454 5-391 (451)
13 COG0728 MviN Uncharacterized m 100.0 1.4E-26 3.1E-31 221.0 48.7 407 41-454 7-425 (518)
14 PRK10459 colanic acid exporter 100.0 4.8E-27 1E-31 233.6 45.7 387 40-454 4-393 (492)
15 COG2244 RfbX Membrane protein 100.0 2E-24 4.4E-29 214.2 39.5 389 39-448 4-394 (480)
16 PRK00187 multidrug efflux prot 99.9 5.7E-21 1.2E-25 187.5 26.0 207 35-242 230-443 (464)
17 PRK01766 multidrug efflux prot 99.9 3.1E-20 6.7E-25 182.8 25.3 206 36-242 234-441 (456)
18 PRK10189 MATE family multidrug 99.9 1.6E-19 3.5E-24 177.4 28.9 211 36-247 254-466 (478)
19 PRK10367 DNA-damage-inducible 99.9 9.6E-20 2.1E-24 177.2 26.2 197 257-455 5-201 (441)
20 COG0534 NorM Na+-driven multid 99.9 1.2E-19 2.6E-24 176.5 26.3 208 34-243 234-443 (455)
21 PRK09575 vmrA multidrug efflux 99.8 2.4E-19 5.3E-24 175.7 24.6 196 257-455 8-204 (453)
22 TIGR01695 mviN integral membra 99.8 1.9E-17 4.1E-22 165.5 32.0 204 37-242 219-427 (502)
23 PF01943 Polysacc_synt: Polysa 99.8 1.5E-16 3.2E-21 145.9 33.3 270 44-329 2-272 (273)
24 PF03023 MVIN: MviN-like prote 99.8 1.1E-15 2.4E-20 149.0 30.4 205 37-243 194-403 (451)
25 PF01554 MatE: MatE; InterPro 99.8 1E-18 2.2E-23 146.9 7.3 162 269-432 1-162 (162)
26 TIGR00797 matE putative efflux 99.7 3.4E-16 7.3E-21 148.5 23.5 184 269-455 1-186 (342)
27 TIGR02900 spore_V_B stage V sp 99.7 4.1E-16 9E-21 155.3 25.1 204 34-242 218-433 (488)
28 COG0728 MviN Uncharacterized m 99.7 2.9E-14 6.2E-19 137.0 34.2 204 38-243 229-437 (518)
29 PF01554 MatE: MatE; InterPro 99.7 2.9E-18 6.3E-23 144.1 6.0 160 49-209 1-162 (162)
30 PRK10459 colanic acid exporter 99.7 8.5E-14 1.8E-18 138.7 34.2 200 37-242 203-404 (492)
31 PRK15099 O-antigen translocase 99.7 1.8E-14 3.9E-19 140.2 26.2 199 36-241 210-410 (416)
32 PF13440 Polysacc_synt_3: Poly 99.7 3.5E-13 7.6E-18 121.8 31.9 247 59-328 2-250 (251)
33 COG2244 RfbX Membrane protein 99.6 4.2E-13 9.2E-18 133.3 26.2 185 36-225 208-394 (480)
34 PF04506 Rft-1: Rft protein; 99.2 3.6E-08 7.8E-13 97.3 29.8 410 44-455 4-459 (549)
35 KOG1347 Uncharacterized membra 99.1 3.1E-09 6.8E-14 103.2 18.1 195 257-455 24-219 (473)
36 KOG2864 Nuclear division RFT1 99.0 2.2E-05 4.7E-10 73.0 34.2 402 40-455 7-438 (530)
37 PF07260 ANKH: Progressive ank 98.9 9E-06 2E-10 72.2 29.1 313 38-361 8-343 (345)
38 PF14667 Polysacc_synt_C: Poly 98.6 1E-05 2.3E-10 66.2 17.7 79 163-243 2-80 (146)
39 PF04506 Rft-1: Rft protein; 98.5 2.1E-05 4.5E-10 78.0 22.2 203 40-243 252-470 (549)
40 KOG2864 Nuclear division RFT1 98.0 0.0039 8.5E-08 58.5 22.9 201 41-243 239-449 (530)
41 PF01943 Polysacc_synt: Polysa 97.7 0.016 3.5E-07 52.5 21.3 176 265-454 3-179 (273)
42 PF13440 Polysacc_synt_3: Poly 97.6 0.023 5.1E-07 50.9 20.8 154 284-454 7-161 (251)
43 PF14667 Polysacc_synt_C: Poly 97.5 0.00051 1.1E-08 56.1 8.2 67 385-454 2-68 (146)
44 COG4267 Predicted membrane pro 97.3 0.13 2.9E-06 47.4 34.5 337 89-452 72-432 (467)
45 PF07260 ANKH: Progressive ank 97.3 0.092 2E-06 47.4 19.6 158 258-421 8-168 (345)
46 PF04505 Dispanin: Interferon- 70.7 29 0.00063 24.8 6.8 41 315-355 33-73 (82)
47 KOG0569 Permease of the major 51.3 2.6E+02 0.0057 27.9 14.4 35 185-221 399-433 (485)
48 COG4267 Predicted membrane pro 45.6 2.8E+02 0.0061 26.5 17.7 123 313-452 75-197 (467)
49 PF08627 CRT-like: CRT-like; 34.0 1.7E+02 0.0037 22.8 5.8 29 43-71 51-79 (130)
50 PRK10739 putative antibiotic t 33.5 3.1E+02 0.0067 23.5 8.4 61 323-387 21-81 (197)
51 PF05313 Pox_P21: Poxvirus P21 28.1 3.5E+02 0.0076 22.7 7.0 27 217-243 135-161 (189)
52 PF01914 MarC: MarC family int 23.5 4.8E+02 0.01 22.4 11.2 60 323-386 21-80 (203)
53 PRK11111 hypothetical protein; 22.9 5.1E+02 0.011 22.6 8.8 62 323-388 27-88 (214)
54 PF02592 DUF165: Uncharacteriz 22.6 4.1E+02 0.0089 21.3 12.9 105 96-207 8-116 (145)
55 TIGR00427 membrane protein, Ma 22.3 5E+02 0.011 22.3 8.8 63 323-389 24-86 (201)
56 PF03806 ABG_transport: AbgT p 20.7 8.7E+02 0.019 24.4 13.7 136 321-456 225-374 (502)
57 PRK03612 spermidine synthase; 20.4 9E+02 0.019 24.5 21.8 47 192-240 151-197 (521)
58 PRK10995 inner membrane protei 20.3 5.8E+02 0.013 22.2 8.3 60 323-386 25-84 (221)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=2.6e-56 Score=432.52 Aligned_cols=416 Identities=24% Similarity=0.334 Sum_probs=395.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCcc
Q 012805 36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYY 115 (456)
Q Consensus 36 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 115 (456)
.++..|+++++++|+++++++..+++++|++++||+|++++++.++++++..+ ...+..|++.+..+.++|++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~-~~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFL-IIAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHcCCchH
Confidence 56789999999999999999999999999999999999999999999999998 88899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHH
Q 012805 116 MLGVYMQRSWIVLFVCCVLLLP-LYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAW 194 (456)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (456)
++++..+++++++++.+++..+ .+.+.++++.+++.++++.+.+.+|+++..++.|+..+....++.+|+.||+|.++.
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 9999999999999999966665 589999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-cC-CccchhHHHHHHHHHHHHHHHHHHHhcCCc--cccCCCCCHhhHhcHHHHHHHHhHH
Q 012805 195 VSLVALLVHIFVSWLFVNR-MQ-LGVIGTAATLNFSWWILVFGLFGYVSCGGC--PLTWTGFTLEAFSGLWQFVKLSAAS 270 (456)
Q Consensus 195 ~~~~~~~~~i~~~~~li~~-~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~p~ 270 (456)
.++++.++|+++|++++++ ++ +|+.|+++||++++++..++...++++++. +....+..+.+++.+|++++.|+|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999997 67 999999999999999999999999988742 3332334345568999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHH
Q 012805 271 GVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSV 350 (456)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~i~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~ 350 (456)
++++..+...+...+.+++++| ++++|+|+++.++.++.++++.+++++..|.+++++|+||+|++++..+.+.+++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 77999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHhhhHHHH
Q 012805 351 IIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLG 430 (456)
Q Consensus 351 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~~~ 430 (456)
.+++..+++++++++++..+|++|+++.+.+..++++.++..++++.+.+..+++||.||+|.+++.++.++|.+.+|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCchhHHHHHHHHhhhhc
Q 012805 431 CLMGWVFHQGVMVCTLNFSLAKLLK 455 (456)
Q Consensus 431 ~~l~~~~~~g~~g~~~~~~~~~~~~ 455 (456)
+++.+++ +|..|+|+++..++.++
T Consensus 409 ~~l~~~~-~g~~Gvw~~~~~~~~~~ 432 (455)
T COG0534 409 YLLGFFF-LGLAGVWIGFPLSLILR 432 (455)
T ss_pred HHHhhhc-ccchHHHHHHHHHHHHH
Confidence 9999985 69999999999999875
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=3.6e-51 Score=400.48 Aligned_cols=415 Identities=14% Similarity=0.147 Sum_probs=382.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCcchH
Q 012805 38 VESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYML 117 (456)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 117 (456)
+..|++++.++|.++++++..+.+.+|+.+++++|++++++++++.++..+ ...+..|++++.++.++|++|++|+|++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~-~~~~~~gl~~g~~~lvsq~~Ga~~~~~~ 104 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMV-IMAFFAAIDLGTTVVVAFSLGKRDRRRA 104 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 468999999999999999999999999999999999999999999999888 8889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC--CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHH
Q 012805 118 GVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLG--QPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAW 194 (456)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (456)
++..++++.++..++++..++ +.+.++++.++. .|+++.+.+..|+++..++.|+..+....++++|+.||++.++.
T Consensus 105 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 184 (478)
T PRK10189 105 RAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLL 184 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHH
Confidence 999999999999999877764 778888998884 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc----CCccchhHHHHHHHHHHHHHHHHHHHhcC-C--ccccCCC-CCHhhHhcHHHHHHH
Q 012805 195 VSLVALLVHIFVSWLFVNRM----QLGVIGTAATLNFSWWILVFGLFGYVSCG-G--CPLTWTG-FTLEAFSGLWQFVKL 266 (456)
Q Consensus 195 ~~~~~~~~~i~~~~~li~~~----~~g~~g~a~a~~i~~~~~~~~~~~~~~~~-~--~~~~~~~-~~~~~~~~~~~~l~~ 266 (456)
.+++..++|+++++++++.+ ++|+.|+++|+.+++.+..++..+++.++ + .+.++++ +.+.+++.+|++++.
T Consensus 185 i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i 264 (478)
T PRK10189 185 INGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGI 264 (478)
T ss_pred HHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHH
Confidence 99999999999999999853 68999999999999999988776666543 1 1222222 112345789999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHH
Q 012805 267 SAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSV 346 (456)
Q Consensus 267 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~i~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~ 346 (456)
|+|.+++.........+.+.+++++| +.++|+|+++.++.++.+++..+++++..|.+++++|+||.+++|+..+.+.
T Consensus 265 G~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~ 342 (478)
T PRK10189 265 GIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVF 342 (478)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999888888888888889888 6799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHhhh
Q 012805 347 VTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIG 426 (456)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~ 426 (456)
+++..+++..+++++.+++++..+|++|+|+.+.+..++++.++..++++++.+..+.++|.||++.++++++.+.|++.
T Consensus 343 ~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ 422 (478)
T PRK10189 343 WLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCR 422 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHhhhhc
Q 012805 427 VPLGCLMGWVFHQGVMVCTLNFSLAKLLK 455 (456)
Q Consensus 427 i~~~~~l~~~~~~g~~g~~~~~~~~~~~~ 455 (456)
+|+.++++...++|+.|+|++..++++++
T Consensus 423 ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~ 451 (478)
T PRK10189 423 VVAGYILGIMLGFGVVGVWMGMFLDWAVR 451 (478)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 99999999888899999999999988765
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=2.6e-51 Score=401.52 Aligned_cols=417 Identities=19% Similarity=0.228 Sum_probs=382.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCcc
Q 012805 36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYY 115 (456)
Q Consensus 36 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 115 (456)
+++..|++++.++|.++++++..+.+.+|+.+++|+|++++++++++.++..+ ...+..|++++..+.++|++|++|+|
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~-~~~~~~gl~~~~~~i~aq~~Ga~~~~ 83 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSF-VSIFCVGVIAAVGTLVAIRHGAGDIE 83 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 45678999999999999999999999999999999999999999999999988 77788999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHH
Q 012805 116 MLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWV 195 (456)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 195 (456)
++++..++++.+..+++++..++..+.++++.+++.|+|+.+.+.+|+++..++.|+..+....++++++.||++.+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 163 (464)
T PRK00187 84 GATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVI 163 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999998877766556789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc----CCccchhHHHHHHHHHHHHHHHHHHHhcCC-c-cccC-CCCCHhhHhcHHHHHHHHh
Q 012805 196 SLVALLVHIFVSWLFVNRM----QLGVIGTAATLNFSWWILVFGLFGYVSCGG-C-PLTW-TGFTLEAFSGLWQFVKLSA 268 (456)
Q Consensus 196 ~~~~~~~~i~~~~~li~~~----~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~~~l~~~~ 268 (456)
+++..++|+++|+++++.+ ++|+.|+++|+.+++....+.+..++++++ . +.+. ++..+.+++..|++++.++
T Consensus 164 ~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~ 243 (464)
T PRK00187 164 SLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGL 243 (464)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhh
Confidence 9999999999999999753 379999999999999888877666665542 1 1111 1222334568999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 012805 269 ASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVT 348 (456)
Q Consensus 269 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~i~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~ 348 (456)
|.++++..+...+.+++.+++++| ++++|+++++.++..+.+.+..+++++..+.++|++|+||.|++++..+.+..+
T Consensus 244 P~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~ 321 (464)
T PRK00187 244 PIGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGF 321 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998 679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccC--cH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHH
Q 012805 349 SVIIGLFFWLLIMIYHNELALIFSS--SE---AVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYY 423 (456)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 423 (456)
+..++++.++++.++++++.++|++ |+ |+.+.+..++++.+++.++++++....+++++.||+|.+++.++.+.|
T Consensus 322 ~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~ 401 (464)
T PRK00187 322 GAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYW 401 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHH
Confidence 9999999999999999999999964 33 678999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhcCchhHHHHHHHHhhhhc
Q 012805 424 LIGVPLGCLMGWVFHQGVMVCTLNFSLAKLLK 455 (456)
Q Consensus 424 i~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~ 455 (456)
++++|+.+++.+++++|+.|+|+++.++++++
T Consensus 402 ~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~ 433 (464)
T PRK00187 402 LVGAPLAWLLAFTLGWGAVGVWWGLALGLACA 433 (464)
T ss_pred HHHHHHHHHHHhccCCCceeeHHHHHHHHHHH
Confidence 99999999999998999999999999998865
No 4
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=4.5e-49 Score=385.21 Aligned_cols=414 Identities=17% Similarity=0.189 Sum_probs=379.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCcc
Q 012805 37 WVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHL-GDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYY 115 (456)
Q Consensus 37 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 115 (456)
++..|++++.++|.+++++...+.+.+|+.+++|+ |+++++++++++++..+ ...+..+++.+.++.++|++|+||+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~-~~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGI-ILGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHhcCCCHH
Confidence 45789999999999999999999999999999995 99999999999999998 77788999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHH
Q 012805 116 MLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAW 194 (456)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (456)
++++.+++++.++.+.+++..++ ..+.++++.+++.|++..+.+.+|+++..++.++..+.....+.+|+.||++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999877664 78899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhcCCccccCC-CCCHhhHhcHHHHHHHHhHHHHH
Q 012805 195 VSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWT-GFTLEAFSGLWQFVKLSAASGVM 273 (456)
Q Consensus 195 ~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~p~~~~ 273 (456)
.++...++|+++++++++.+++|+.|+++++.+++.+..++..+++++++.+.+++ +..+.+++.+|++++.|.|.+++
T Consensus 167 ~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~ 246 (453)
T PRK09575 167 LMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFM 246 (453)
T ss_pred HHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHH
Confidence 99999999999999999888899999999999999999998877776553222221 11223456789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHH
Q 012805 274 LCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIG 353 (456)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~va~~~i~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 353 (456)
.....+...+.+.+++++|+ +.++|+++++.++..+.+.+..+++++..|.+++++|+||+|++++..+.+.++++..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~ 325 (453)
T PRK09575 247 YLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAG 325 (453)
T ss_pred HHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888884 56899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcccccC-cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHhhhHHHHHH
Q 012805 354 LFFWLLIMIYHNELALIFSS-SEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCL 432 (456)
Q Consensus 354 ~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~~~~~ 432 (456)
++.+++++.+++++..+|++ |+|+.+.+.+++++.+++.++++++....+++++.||++.++..++.. +++.+|..++
T Consensus 326 ~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~l 404 (453)
T PRK09575 326 IAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLFI 404 (453)
T ss_pred HHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHHH
Confidence 99999999999999999995 788999999999999999999999999999999999999999999876 5789999999
Q ss_pred HHHHhcCchhHHHHHHHHhhhhc
Q 012805 433 MGWVFHQGVMVCTLNFSLAKLLK 455 (456)
Q Consensus 433 l~~~~~~g~~g~~~~~~~~~~~~ 455 (456)
+...+ |+.|+|+++.++++++
T Consensus 405 l~~~~--G~~Gvw~a~~~~~~~~ 425 (453)
T PRK09575 405 LPKWL--GVDGVWLAMPLSNIAL 425 (453)
T ss_pred HHHHH--CcchHhhHHHHHHHHH
Confidence 98765 9999999999998764
No 5
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=9.6e-49 Score=379.85 Aligned_cols=408 Identities=16% Similarity=0.136 Sum_probs=360.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCcch
Q 012805 38 VESKKLWYIVGPAIFSRLASYSMLVITQAFAGHL-GDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYM 116 (456)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 116 (456)
++.|+++|.++|.++++++..+.+.+|+.+++|+ |++++++++++.++..+ ...+..+++.+..+.++|++|+||+|+
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~-~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSF-LFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 4578999999999999999999999999999998 77899999999999998 788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHH
Q 012805 117 LGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWV 195 (456)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 195 (456)
+++..++++.++++++++..+. ..+.++++.+++.|+++.+.+.+|+++..++.|+..+....++++|+.||+|.++..
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 9999999999999998877754 678888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhcC-Ccc-ccCCCCCHhhHhcHHHHHHHHhHHHHH
Q 012805 196 SLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG-GCP-LTWTGFTLEAFSGLWQFVKLSAASGVM 273 (456)
Q Consensus 196 ~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~l~~~~p~~~~ 273 (456)
.+++.++|+++++++++.+++|+.|+++|+.+++.+..++...+++++ +.+ .+.+.++...++.+|++++.|.|.+++
T Consensus 165 ~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~ 244 (441)
T PRK10367 165 LVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIMLR 244 (441)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHHH
Confidence 999999999999999998899999999999999999988877777653 211 111111111124689999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHH
Q 012805 274 LCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIG 353 (456)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~va~~~i~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 353 (456)
+..+...+.+.+.+++++| ++++|+|+++.++.++.+++..+++++.+|.++|++|+||+|++|+..+++.+++..++
T Consensus 245 ~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~ 322 (441)
T PRK10367 245 SLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVA 322 (441)
T ss_pred HHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 67999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccC---cchhhHHHHHHHHHhhhHHHH
Q 012805 354 LFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSG---WQSYVAYINLGCYYLIGVPLG 430 (456)
Q Consensus 354 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~~~~i~~i~~~ 430 (456)
.+.+++++.+++++..+|++|+|+.+.+..++++.++..+......+..+++++.+ |+|.++++++++.|+..++.
T Consensus 323 ~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~~~- 401 (441)
T PRK10367 323 LLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLLTL- 401 (441)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHH-
Confidence 99999999999999999999999999999999998876443334444444555555 59999999999877533322
Q ss_pred HHHHHHhcCchhHHHHHHHHhhhhc
Q 012805 431 CLMGWVFHQGVMVCTLNFSLAKLLK 455 (456)
Q Consensus 431 ~~l~~~~~~g~~g~~~~~~~~~~~~ 455 (456)
. ++|+.|+|+++.+++.++
T Consensus 402 ----~--~~g~~Gvw~a~~~~~~~~ 420 (441)
T PRK10367 402 ----P--WLGNHGLWLALTVFLALR 420 (441)
T ss_pred ----H--HcCchHHHHHHHHHHHHH
Confidence 2 359999999999998775
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=1.1e-48 Score=384.45 Aligned_cols=419 Identities=18% Similarity=0.324 Sum_probs=385.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCC
Q 012805 34 RTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKR 113 (456)
Q Consensus 34 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~ 113 (456)
++.++..|++++.++|.+++++...+.+.+|..+++++|++++++++++.++... ...+..|++.+..+.++|++|++|
T Consensus 5 ~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~-~~~~~~g~~~a~~~~vs~~~g~~~ 83 (456)
T PRK01766 5 QKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLP-VILFGHGLLLALTPIVAQLNGAGR 83 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4567789999999999999999999999999999999999999999999998776 677889999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHH
Q 012805 114 YYMLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI 192 (456)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (456)
+|++++.+++++.+++..+++..++ +.+.+++..+++.|+++.+.+..|+++.+++.++..+...+++++++.||+|.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 163 (456)
T PRK01766 84 RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPT 163 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 9999999999999999999877765 677788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc----CCccchhHHHHHHHHHHHHHHHHHHHhcCCc-c--ccCCCCCHhhHhcHHHHHH
Q 012805 193 AWVSLVALLVHIFVSWLFVNRM----QLGVIGTAATLNFSWWILVFGLFGYVSCGGC-P--LTWTGFTLEAFSGLWQFVK 265 (456)
Q Consensus 193 ~~~~~~~~~~~i~~~~~li~~~----~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~ 265 (456)
+..++++.++|+++++++++.. ++|+.|+++++.+++.+..++..+++++++. + +.++++.+.+++..|++++
T Consensus 164 ~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~ 243 (456)
T PRK01766 164 MVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLK 243 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHH
Confidence 9999999999999999998642 4699999999999999999988888766421 1 1112222334567999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHH
Q 012805 266 LSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVS 345 (456)
Q Consensus 266 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~i~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~ 345 (456)
.++|..++...+...+.+++.+++++| ++++++++++.++.++...++.+++.+..+.++|++|+||++++++..+.+
T Consensus 244 l~~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~ 321 (456)
T PRK01766 244 LGLPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIG 321 (456)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999999999999999999999999988 678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHhh
Q 012805 346 VVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLI 425 (456)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~ 425 (456)
.+++..++++.+++++.+++++.++|++|+++.+.+..++++.++..++++++....+++++.||++.+++.++++.|++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~ 401 (456)
T PRK01766 322 LAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVL 401 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCchhHHHHHHHHhhhhc
Q 012805 426 GVPLGCLMGWVFHQGVMVCTLNFSLAKLLK 455 (456)
Q Consensus 426 ~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~ 455 (456)
.+|..+++...+++|+.|+|++..++++++
T Consensus 402 ~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~ 431 (456)
T PRK01766 402 GLPLGYILALTDPMGPFGFWIGLIIGLTAA 431 (456)
T ss_pred HHHHHHHHHhccCCCceehHHHHHHHHHHH
Confidence 999999999888899999999999998875
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=2.1e-36 Score=301.92 Aligned_cols=402 Identities=14% Similarity=0.085 Sum_probs=338.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHH-HHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHhcCCCcchHHH
Q 012805 43 LWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIEL-AAISIANNVIVGFDFGLL-LGMASALETLCGQAFGAKRYYMLGV 119 (456)
Q Consensus 43 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~-~~~~~~~~~~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~ 119 (456)
+.|.+.-..++++++.+.+++|.++++| +|++++ ++++.+.++...+..... .|++++..+...++.+++ |++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5688899999999999999999999999 899999 899999999877344333 578888777776654332 67777
Q ss_pred HHHHHHHHHHHHH-HHHHH-HHHhHHHHHHHc--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHH
Q 012805 120 YMQRSWIVLFVCC-VLLLP-LYLFASPVLKLL--GQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWV 195 (456)
Q Consensus 120 ~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~--~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 195 (456)
.+.+........+ ++..+ .+.+.+++..++ +.+++..+.+.+|++++.++.++..+....++++|+.||++.++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 7777666555444 33344 466777777777 4566777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccchhH--HHHHHHHHHHHHHHHHHHhcCCccccCCCCCHhhHhcHHHHHHHHhHHHHH
Q 012805 196 SLVALLVHIFVSWLFVNRMQLGVIGTA--ATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVM 273 (456)
Q Consensus 196 ~~~~~~~~i~~~~~li~~~~~g~~g~a--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~ 273 (456)
+++..+++++..+++. .++|..|++ +++++++.+..++.+.+.+|++.+.+ .+++ .+++..|++++++.|..++
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~k~~l~~~~p~~~~ 235 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLK-PRFN-FRDPGLKRFLKLFLPTTLG 235 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccc-CcCC-CCChhHHHHHHHHHHHHHH
Confidence 9999887776544433 466999988 99999999998888777765432211 1121 1345789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHH
Q 012805 274 LCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMM-IPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVII 352 (456)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~va~~~i~~~i~~~~~~-~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 352 (456)
+....+...++..+.+.++ +.++++|+.+.++.++... +..+++++..|.++++++++|.+++++..+++.++...+
T Consensus 236 ~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (502)
T TIGR01695 236 SSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLL 313 (502)
T ss_pred HHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877766 5688899999999988764 678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcccccC----cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHhhhHH
Q 012805 353 GLFFWLLIMIYHNELALIFSS----SEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVP 428 (456)
Q Consensus 353 ~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~ 428 (456)
++|.++++..+++++..++.+ |++..+.+..++++++++.++.+++..+.+.+++.||+|.+++.++.. .++++|
T Consensus 314 ~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~i~i~ 392 (502)
T TIGR01695 314 TIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVIS-VVLNAL 392 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHH-HHHHHH
Confidence 999999999999999999876 456788899999999999999999999999999999999999999988 588999
Q ss_pred HHHHHHHHhcCchhHHHHHHHHhhhhc
Q 012805 429 LGCLMGWVFHQGVMVCTLNFSLAKLLK 455 (456)
Q Consensus 429 ~~~~l~~~~~~g~~g~~~~~~~~~~~~ 455 (456)
+.+++...+ |+.|+|++..+++++.
T Consensus 393 l~~~l~~~~--G~~G~~~a~~i~~~~~ 417 (502)
T TIGR01695 393 LSLLLIFPL--GLVGIALATSAASMVS 417 (502)
T ss_pred HHHHHHHHH--hhhHHHHHHHHHHHHH
Confidence 999998766 9999999999998764
No 8
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=6.1e-37 Score=290.60 Aligned_cols=337 Identities=26% Similarity=0.473 Sum_probs=306.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCcchHHHHHHHHHHHH
Q 012805 49 PAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVL 128 (456)
Q Consensus 49 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 128 (456)
|.++++++..+...+|+.+++++|++++++++++.++..+ ...+..|++++..+.++++.|++|+|+.++.+++.+.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~-~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMF-LFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHH-HHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999998887 788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q 012805 129 FVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVS 207 (456)
Q Consensus 129 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 207 (456)
...+++..++ ..+.+++..+++.+++..+++..+++++.+..++..+.....+.+++.||++.+...++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999887764 778888888888788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-hcC-CccchhHHHHHHHHHHHHHHHHHHHhcC-CccccCCCCCHhhHhcHHHHHHHHhHHHHHHHHHHHHHHHH
Q 012805 208 WLFVN-RMQ-LGVIGTAATLNFSWWILVFGLFGYVSCG-GCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRIL 284 (456)
Q Consensus 208 ~~li~-~~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~ 284 (456)
+++++ .++ +|+.|+++++.+++++..++..++.+++ +.+.++++..+.+++..|+++++++|..+++....+...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 99987 677 7899999999999999998888777653 33333222223345689999999999999999999999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012805 285 ISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMIYH 364 (456)
Q Consensus 285 ~~~~~~~~~~~~~va~~~i~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (456)
+.+++.+| +.++++|+++.++.++...++.+++++..|.++++++++|.++.++..+++.++.+.++++.++++.+++
T Consensus 240 ~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887 6789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCcHHHHHHHHHHHHHH
Q 012805 365 NELALIFSSSEAVLQAVNKLSILL 388 (456)
Q Consensus 365 ~~i~~l~~~~~~~~~~~~~~l~i~ 388 (456)
+++.++|++|+++.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999988888764
No 9
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=5.2e-36 Score=298.07 Aligned_cols=403 Identities=12% Similarity=0.128 Sum_probs=336.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCcchHHHHHH
Q 012805 44 WYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQ 122 (456)
Q Consensus 44 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 122 (456)
.|.+.|.+++++...+.+++|..+++| +|+|++|+++.+.++..++......|++++..+.++|+.+++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 477899999999999999999999999 7999999999999999884555567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 012805 123 RSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALL 201 (456)
Q Consensus 123 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 201 (456)
+++++..+.+++..++ ..+.+++...+..+++. ..++++..+..++..+....+..+++.+|.|..+..+.++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999998877665 56666666666555543 346788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-----CCccchhHHHHHHHHHHHHHHHHHHHhcC-Cc--cccCCCCCHhhHhcHHHHHHHHhHHHHH
Q 012805 202 VHIFVSWLFVNRM-----QLGVIGTAATLNFSWWILVFGLFGYVSCG-GC--PLTWTGFTLEAFSGLWQFVKLSAASGVM 273 (456)
Q Consensus 202 ~~i~~~~~li~~~-----~~g~~g~a~a~~i~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~l~~~~p~~~~ 273 (456)
+++.++..++..+ ++++.|+++++.+++.+..+..+++++++ +. +..+.+..+.+++..|+++++++|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 9988776665421 24678888999999999888877666543 21 1112112233456899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCC----C-hH---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHH
Q 012805 274 LCLENWYYRILISMTGNLQ----N-AE---IAVDAL-SICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIV 344 (456)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~----~-~~---~~va~~-~i~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~ 344 (456)
+....+...+|++++++.. . .. ..++.| +++.++..+...+..+++++..|.++++.|++|.++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999988886532 1 01 233333 4567788888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHh
Q 012805 345 SVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYL 424 (456)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i 424 (456)
..++...++.|.++++..+++++..++.++++ +.++++++++..++.+++....+.+++.||+|.+++.++.+ .+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIG-AI 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH-HH
Confidence 99999999999999999999999999876543 57789999999999999999999999999999999999998 58
Q ss_pred hhHHHHHHHHHHhcCchhHHHHHHHHhhhhc
Q 012805 425 IGVPLGCLMGWVFHQGVMVCTLNFSLAKLLK 455 (456)
Q Consensus 425 ~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~ 455 (456)
+++++.+++....++|+.|+|+++.+++++.
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~ 423 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFIITSVLV 423 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 9999998887334459999999999998763
No 10
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=291.66 Aligned_cols=418 Identities=43% Similarity=0.701 Sum_probs=399.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCC
Q 012805 33 TRTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAK 112 (456)
Q Consensus 33 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~ 112 (456)
+++...+.|++++++.|..+..+.+...+.++..++||+|+.++++.+++.+..+.....+..|+..+..+.++|++|.+
T Consensus 20 ~~~~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~ 99 (473)
T KOG1347|consen 20 FSQLVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAK 99 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccc
Confidence 34447889999999999999999999999999999999999999999999999998788999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHH
Q 012805 113 RYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI 192 (456)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (456)
+++....+.+++.......+++...++.+.+++...++.++++...+..|.++..+..+.+........+++++++..+.
T Consensus 100 ~~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~ 179 (473)
T KOG1347|consen 100 KFTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPL 179 (473)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCHhhHhcHHHHHHHHhHHHH
Q 012805 193 AWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGV 272 (456)
Q Consensus 193 ~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~ 272 (456)
.+......++|+.+++++++..++|..|++++..++++.....+..|.........|..+... ++..+++++.+.|..+
T Consensus 180 ~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~ 258 (473)
T KOG1347|consen 180 LVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAV 258 (473)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchh
Confidence 999999999999999999999999999999999999999999999888776556667666666 7899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHH
Q 012805 273 MLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVII 352 (456)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~va~~~i~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 352 (456)
+...+++.+....+..+.+++...++++.+++.++....++++.+++.+...++++.+|++|.+++|...+.....+...
T Consensus 259 miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~ 338 (473)
T KOG1347|consen 259 MICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAI 338 (473)
T ss_pred eeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHhhhHHHHHH
Q 012805 353 GLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCL 432 (456)
Q Consensus 353 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~~~~~ 432 (456)
+...+..++.+++.+..+|++|+++.+...+..++++...++++.+.+..+..++.|++++..++++.+.+++++|..++
T Consensus 339 g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~ 418 (473)
T KOG1347|consen 339 GASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLY 418 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCchhHHHHHHHHh
Q 012805 433 MGWVFHQGVMVCTLNFSLA 451 (456)
Q Consensus 433 l~~~~~~g~~g~~~~~~~~ 451 (456)
+....++|..|+|.++...
T Consensus 419 l~~~~~~g~~glw~G~~~~ 437 (473)
T KOG1347|consen 419 LGFFTKFGVKGLWIGILLG 437 (473)
T ss_pred EEEEEecCceEEEeehHHH
Confidence 9988999999999997765
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=1.2e-33 Score=274.52 Aligned_cols=393 Identities=11% Similarity=0.008 Sum_probs=332.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCcchHHHHH
Q 012805 43 LWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYM 121 (456)
Q Consensus 43 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~ 121 (456)
+.|.+.....+++...+.+++...+++| +|++++|.++...++...+......|++++..+.++|+ ++|+|+.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 6788889999999999999999999999 79999999999999999756666889999988999987 67888999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 012805 122 QRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVAL 200 (456)
Q Consensus 122 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 200 (456)
++++.+.+..+++..++ +.+.+++...+..+++. ..+..+..+..++..+.+...+.+|+.||++.++...+++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998877654 77778888877766642 24456666666677888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhcC-CccccCCCCCHhhHhcHHHHHHHHhHHHHHHHHHHH
Q 012805 201 LVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG-GCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENW 279 (456)
Q Consensus 201 ~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~ 279 (456)
++|+.+ +++.... .|+.|+++++++++.+..+...++++|+ +.+.++.+.+ .+++..|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPS-WDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhcc-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 4444432 3999999999999999887777666654 2222111222 2356789999999999999999999
Q ss_pred HHHHHHHHHh-cCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHH
Q 012805 280 YYRILISMTG-NLQNAEIAVDALSICMTINGW-EMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFW 357 (456)
Q Consensus 280 ~~~~~~~~~~-~~~~~~~~va~~~i~~~i~~~-~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (456)
....++.+++ .+| ++++|.|+++.|+.+. ...+..+++++..|.+++. +|.++.++..++..+....++++.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998886 666 7799999999999884 5899999999999999995 6788899999999999999999999
Q ss_pred HHHHHhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHhhhHHHHHHHHHHh
Q 012805 358 LLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWVF 437 (456)
Q Consensus 358 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~~~~~l~~~~ 437 (456)
+++.+++++++.++.+|+ ++.+.+++++++++.++...+........+.++++.....++.. .++.+|+.+++.+.+
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li~~~ 385 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLIPLH 385 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 999999999999998876 66688899999999999988888887777888888777666654 789999999999887
Q ss_pred cCchhHHHHHHHHhhhh
Q 012805 438 HQGVMVCTLNFSLAKLL 454 (456)
Q Consensus 438 ~~g~~g~~~~~~~~~~~ 454 (456)
|..|++++..++|++
T Consensus 386 --G~~G~a~a~~is~~~ 400 (416)
T PRK15099 386 --GALGAAQAYMATYIV 400 (416)
T ss_pred --hhHHHHHHHHHHHHH
Confidence 999999999999976
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=1.1e-28 Score=239.93 Aligned_cols=374 Identities=16% Similarity=0.141 Sum_probs=324.2
Q ss_pred cChH-HHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHH
Q 012805 71 LGDI-ELAAISIANNVIVGFDFGLL-LGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLK 147 (456)
Q Consensus 71 lg~~-~~~~~~~~~~~~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 147 (456)
+|.. +..++.++.++..++...+. .++.++..|..++.. ++++|+.++..++.........+.+.++ +.+.+++.+
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655 56789999999998555554 568999999999998 8899999999988887777777666654 788888888
Q ss_pred Hc--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCc---cchhH
Q 012805 148 LL--GQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLG---VIGTA 222 (456)
Q Consensus 148 ~~--~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g---~~g~a 222 (456)
.+ +.+++..+.+.+.++++.+..++..+..++.+++++++|...+....++.++..++..+++.... | +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~~--~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNSW--GQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHhc--CchHHHHHH
Confidence 77 56778889999999999999999999999999999999999999999988877666544444433 6 88999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCCCCHhhHhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 012805 223 ATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALS 302 (456)
Q Consensus 223 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~ 302 (456)
++..++..++.++.+...+|...+.+.+ ++.. .+..|++++...|..+.....++...+++.+.+.+++ .++++++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~--G~vs~l~ 237 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPK-FDWR-DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGE--GSVSALN 237 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccccc-CCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--cHHHHHH
Confidence 9999999999999888888764443221 2211 2468999999999999999999999999999999884 4888999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccC----cHHH
Q 012805 303 ICMTINGWEM-MIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSS----SEAV 377 (456)
Q Consensus 303 i~~~i~~~~~-~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~ 377 (456)
.+.++.++.. .+..+++++..|.+++...++|.++.++..++..+....+.+|++++++.+++++.+++.. |++.
T Consensus 238 YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~ 317 (451)
T PF03023_consen 238 YAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAED 317 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHH
Confidence 9999999887 5678999999999999999999999999999999999999999999999999999998642 5566
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHHHHHHhhhh
Q 012805 378 LQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWVFHQGVMVCTLNFSLAKLL 454 (456)
Q Consensus 378 ~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~ 454 (456)
.+....++++++++.++.+++..+...+++.||+|.+++.+... .++++.+.+++.+.+ |..|+.++..++.++
T Consensus 318 ~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~-~~lni~l~~~l~~~~--g~~Glala~sl~~~i 391 (451)
T PF03023_consen 318 TQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVIS-VVLNIILSILLVPFF--GVAGLALATSLSAII 391 (451)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHH-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999988 689999999999887 999999999998865
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.97 E-value=1.4e-26 Score=220.97 Aligned_cols=407 Identities=12% Similarity=0.046 Sum_probs=338.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChH-HHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHhcCCCcchH
Q 012805 41 KKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDI-ELAAISIANNVIVGFDFGLLL-GMASALETLCGQAFGAKRYYML 117 (456)
Q Consensus 41 ~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~-~~~~~~~~~~~~~~~~~~~~~-gl~~~~~~~~s~~~g~~~~~~~ 117 (456)
++++|.++-....++++.+.+++...+++. +|+. ...++.++.++.+++--.+.. .++++..|...++..++++|+.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 457788888888899999999999999999 7984 677999999999985555544 4699999999999887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHc-CC--CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHH
Q 012805 118 GVYMQRSWIVLFVCCVLLLP-LYLFASPVLKLL-GQ--PDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIA 193 (456)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (456)
++..+........+.+...+ ...+.+.+.... .. |++....+....+++.+..++.++.....+.+++.+|...+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 77666666455555544444 466666677343 33 344344678888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCHhhHhcHHHHHHHHhHHHHH
Q 012805 194 WVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVM 273 (456)
Q Consensus 194 ~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~ 273 (456)
+..+..++.-+.....+.+.......+.+++..++-+.+.++.+..++|.+...+.+ +..+ -+.+|++++.-.|..++
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~-~~~~-~~~lk~~~~~~~p~~l~ 244 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPR-FGFK-DPGLKRFLKLMLPALLG 244 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCC-CCCC-chhHHHHHHHHHHHHHH
Confidence 999998888876666555543324778899999999999999999998874322222 1111 14799999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHH
Q 012805 274 LCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEM-MIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVII 352 (456)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~va~~~i~~~i~~~~~-~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 352 (456)
....+++..+++.+.+.+.+| +++.++.+.++.++.. .+..+++++..|.+|++..++|.++.++..+.+.+.++.+
T Consensus 245 ~sisQi~lli~~~iAS~l~~G--sis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll 322 (518)
T COG0728 245 VSISQINLLIDTAIASFLAEG--SVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLL 322 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999844 7779999999999999 7789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcccccC----cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHhhhHH
Q 012805 353 GLFFWLLIMIYHNELALIFSS----SEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVP 428 (456)
Q Consensus 353 ~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~ 428 (456)
++|.+.++.++++|+.+++.. ++++.....+.+..++++.++..+..++...+++.+|+|.|+++++++ .++++.
T Consensus 323 ~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~-~~~n~~ 401 (518)
T COG0728 323 TLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIIS-LVVNIL 401 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHH-HHHHHH
Confidence 999999999999999998632 456688899999999999999999999999999999999999999998 699999
Q ss_pred HHHHHHHHhcCchhHHHHHHHHhhhh
Q 012805 429 LGCLMGWVFHQGVMVCTLNFSLAKLL 454 (456)
Q Consensus 429 ~~~~l~~~~~~g~~g~~~~~~~~~~~ 454 (456)
+.+.+...+ |..|+.++..++.++
T Consensus 402 l~~~l~~~~--~~~giala~s~a~~~ 425 (518)
T COG0728 402 LNLLLIPPL--GHVGLALATSLAAWV 425 (518)
T ss_pred HHHHHHhhc--cchHHHHHHHHHHHH
Confidence 997777766 777877777776544
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.97 E-value=4.8e-27 Score=233.58 Aligned_cols=387 Identities=10% Similarity=0.064 Sum_probs=311.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCcchHH
Q 012805 40 SKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLG 118 (456)
Q Consensus 40 ~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~ 118 (456)
.++..|-+.+..++++...+.+++...+++| +|++++|.++.+..+..++......|++.+.. |. +|.+ +
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~---~~~~--~ 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR---QDIS--H 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc---ccCC--H
Confidence 3567888999999999999999999999999 79999999999999999866777788887642 21 2211 2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 012805 119 VYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSL 197 (456)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 197 (456)
+...+.+++....++++.++ +.+.+++...++ +++. ...+++..+..++..+.......++..+|.+.......
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 34455666666666665554 444444444443 4432 34577777888888888889999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCHhhHhcHHHHHHHHhHHHHHHHHH
Q 012805 198 VALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLE 277 (456)
Q Consensus 198 ~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~ 277 (456)
...+...+....+.. .++|+.+.+++..++..+..+......++ +++.++ ++ +++..|++++++.|...++...
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~-~~---~~~~~k~ll~~~~~~~~~~~~~ 223 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRK-IYRPAL-HF---SLASVKPNLSFGAWQTAERIIN 223 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcc-cCCccc-ee---cHHHHHHHHhhhHHHHHHHHHH
Confidence 888887777666554 36799999999999988877655433333 222211 12 2357899999999999999999
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHH
Q 012805 278 NWYYRILISMTGNLQNAEIAVDALSICMTINGWEM-MIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFF 356 (456)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~va~~~i~~~i~~~~~-~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (456)
.+..+.|+++++.+.+ ++++|.|+.+.++.+... .+...++++..|.+++. ++|.++.++..++..++...+++|+
T Consensus 224 ~~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 300 (492)
T PRK10459 224 YLNTNIDTILIGRILG-AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPL 300 (492)
T ss_pred HHHhcCchhhhhHhhc-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988764 789999999999998755 45566788999999885 5788999999999999999999999
Q ss_pred HHHHHHhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHhhhHHHHHHHHHH
Q 012805 357 WLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWV 436 (456)
Q Consensus 357 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~~~~~l~~~ 436 (456)
.+++.++++++..++.+|+ +..+.+.++++++..++..+.......+++.||+|..++.+++. .++.+|..+.+...
T Consensus 301 ~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~~~i~~~~~~~~~ 377 (492)
T PRK10459 301 LLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFK-TFLFIPAIVIGGQL 377 (492)
T ss_pred HHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHH-HHHHHHHHHHHHhh
Confidence 9999999999999887765 78889999999999999999999999999999999999999887 58888888877776
Q ss_pred hcCchhHHHHHHHHhhhh
Q 012805 437 FHQGVMVCTLNFSLAKLL 454 (456)
Q Consensus 437 ~~~g~~g~~~~~~~~~~~ 454 (456)
+ |+.|+.+++.+++.+
T Consensus 378 ~--G~~g~a~a~~i~~~~ 393 (492)
T PRK10459 378 A--GLIGVALGFLLVQII 393 (492)
T ss_pred c--cHHHHHHHHHHHHHH
Confidence 6 999999999988765
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.95 E-value=2e-24 Score=214.24 Aligned_cols=389 Identities=14% Similarity=0.096 Sum_probs=303.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCcchH
Q 012805 39 ESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYML 117 (456)
Q Consensus 39 ~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 117 (456)
..+++.|.+.....+++...+.+++....++| +|++++|.++.+.++..++......|++.+..+.++++..++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~ 83 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL 83 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence 45678899999999999999999999999999 79999999999999999977777799999999999888655554444
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHH
Q 012805 118 GVY-MQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVS 196 (456)
Q Consensus 118 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 196 (456)
... ...........+.+.........+. ++ .....+++..+..+........++.+|+.++.+......
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (480)
T COG2244 84 ILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSI 153 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence 444 3333333333333332222222111 12 234457788999999999999999999999999999884
Q ss_pred HHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCHhhHhcHHHHHHHHhHHHHHHHH
Q 012805 197 LVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCL 276 (456)
Q Consensus 197 ~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~ 276 (456)
+.. ..-....+.+.. .......++...+..........+..+++.+..+...+. .++..|++++.++|....+..
T Consensus 154 ~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~p~~~~~~~ 228 (480)
T COG2244 154 VSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRF-SLALLKELLRFGLPLLLSSLL 228 (480)
T ss_pred HHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCc-hhHHHHHHHHHhhHHHHHHHH
Confidence 444 111222222221 134445555555555555555544432211111111111 356899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHH
Q 012805 277 ENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFF 356 (456)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~va~~~i~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (456)
..+..+.|+++++.+-+ ++++|.|+.+.++......+..+++.+..|.+++...++|.++.++..+++.++...+++|.
T Consensus 229 ~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 307 (480)
T COG2244 229 NFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPA 307 (480)
T ss_pred HHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998864 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHhhhHHHHHHHHHH
Q 012805 357 WLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWV 436 (456)
Q Consensus 357 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~~~~~l~~~ 436 (456)
.+++..+++++..++.+++ +..+...+.++++..++.+........+++.||++..++.+..+ .+.++.+.+++...
T Consensus 308 ~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i~~~~l~~~li~~ 384 (480)
T COG2244 308 LLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLIS-ALLNLILNLLLIPR 384 (480)
T ss_pred HHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHH-HHHHHHHHhHHHHh
Confidence 9999999999999987765 44489999999999999999999999999999999999999988 58899999999887
Q ss_pred hcCchhHHHHHH
Q 012805 437 FHQGVMVCTLNF 448 (456)
Q Consensus 437 ~~~g~~g~~~~~ 448 (456)
+ |..|...+.
T Consensus 385 ~--g~~g~~~a~ 394 (480)
T COG2244 385 F--GLIGAAIAT 394 (480)
T ss_pred h--hhhhHHHHH
Confidence 7 666666655
No 16
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.89 E-value=5.7e-21 Score=187.47 Aligned_cols=207 Identities=17% Similarity=0.160 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCc
Q 012805 35 TIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRY 114 (456)
Q Consensus 35 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 114 (456)
..++..|+++|.++|.++++++......+|..+++++|++++++++++.++..+ ...+..|++.+.++.++|++|++|+
T Consensus 230 ~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l-~~~~~~gi~~a~~~lvgq~~Ga~~~ 308 (464)
T PRK00187 230 PSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSV-AFMVPVGLSYAVTMRVGQHYGAGRL 308 (464)
T ss_pred CCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 346679999999999999999999999999999999999999999999999998 8889999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC--CH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccc
Q 012805 115 YMLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQ--PD---DVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLK 188 (456)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~---~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (456)
|++++..+.++.++...+++..++ +.+.+++.+.+.. ++ ++.+.+..|+++.+++.++..++.+..+.+|+.||
T Consensus 309 ~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~ 388 (464)
T PRK00187 309 LEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKD 388 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCc
Confidence 999999999999999999877764 7788888888853 33 68888999999999999999999999999999999
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhc
Q 012805 189 NMVIAWVSLVAL-LVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSC 242 (456)
Q Consensus 189 ~~~~~~~~~~~~-~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 242 (456)
+|.++..+++.. ++++++++++.+.+++|+.|+++++.+++.+..+.....+++
T Consensus 389 ~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 389 ARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999985 999999999998888999999999999999988777666543
No 17
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.87 E-value=3.1e-20 Score=182.81 Aligned_cols=206 Identities=21% Similarity=0.199 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCcc
Q 012805 36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYY 115 (456)
Q Consensus 36 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 115 (456)
.++..|++++.++|..++++.......++..+++++|++++++++++.++.++ ...+..|++.+.++.++|++|+||++
T Consensus 234 ~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~-~~~~~~gl~~a~~~~v~~~~Ga~~~~ 312 (456)
T PRK01766 234 DWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSL-LFMLPLSLAMALTIRVGFELGAGRTL 312 (456)
T ss_pred CHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 46679999999999999999999999999999999999999999999999998 77789999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHH
Q 012805 116 MLGVYMQRSWIVLFVCCVLLLP-LYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAW 194 (456)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (456)
++++..+.++.++...+++... ++.+.+++.+++..|+++.+.+..++++..+..++..++....+.++|.||+|.++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~ 392 (456)
T PRK01766 313 DARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFF 392 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHH
Confidence 9999999999999999987765 478889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhc
Q 012805 195 VSLVAL-LVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSC 242 (456)
Q Consensus 195 ~~~~~~-~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 242 (456)
.++++. +++++..+++.+..++|+.|+++++.+++++..++.++++++
T Consensus 393 ~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
T PRK01766 393 ITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRK 441 (456)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence 999985 789999999888778899999999999999999988777765
No 18
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.87 E-value=1.6e-19 Score=177.36 Aligned_cols=211 Identities=15% Similarity=0.102 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCcc
Q 012805 36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYY 115 (456)
Q Consensus 36 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 115 (456)
+++..|+++|.++|..+......+...+.+.+++++|++++++++++.++.++ ...+..|++++.++.++|++|++|.+
T Consensus 254 ~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~-~~~~~~gi~~A~~~lvg~~~Ga~~~~ 332 (478)
T PRK10189 254 NFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAAL-INLPGNALGSASTIITGTRLGKGQIA 332 (478)
T ss_pred CHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 46789999999999999999999999999999999999999999999999998 77899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHH
Q 012805 116 MLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAW 194 (456)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (456)
++++..+.+..++...++.+.++ ..+.+++..+|..|+++.+.+..++++.++..++...+.+..+.+||.||++.++.
T Consensus 333 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~ 412 (478)
T PRK10189 333 QAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMW 412 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHH
Confidence 99999999999999998777765 77888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhcCCccc
Q 012805 195 VSLVA-LLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPL 247 (456)
Q Consensus 195 ~~~~~-~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~ 247 (456)
.+++. .++.+++.+++....++|+.|++++..+++.+..++..+.+++.++++
T Consensus 413 i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~ 466 (478)
T PRK10189 413 VSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW 466 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 99887 678888888887777889999999999999999998888877665544
No 19
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.86 E-value=9.6e-20 Score=177.23 Aligned_cols=197 Identities=15% Similarity=0.104 Sum_probs=185.7
Q ss_pred HhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCChh
Q 012805 257 FSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGK 336 (456)
Q Consensus 257 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~i~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~ 336 (456)
+++.|++++.++|..++++.......+|+.+++++++ +.++|+.+++.++..+...+..+++.+..+.++|++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 3468999999999999999999999999999999863 778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHH
Q 012805 337 GAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAY 416 (456)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 416 (456)
++++..+++...+...+++..+....+.+++..+++.|+|+.+.+.+++++.+++.++..+.....+++++.||+|.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999988888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHhcCchhHHHHHHHHhhhhc
Q 012805 417 INLGCYYLIGVPLGCLMGWVFHQGVMVCTLNFSLAKLLK 455 (456)
Q Consensus 417 ~~~~~~~i~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~ 455 (456)
.++++ .++++++.+++.+.+++|+.|+++++.+++++.
T Consensus 164 ~~ii~-~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~ 201 (441)
T PRK10367 164 LLVVG-NILNIVLDLWLVMGLHMNVQGAALATVIAEYAT 201 (441)
T ss_pred HHHHH-HHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 99998 588999999999888999999999999998753
No 20
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.86 E-value=1.2e-19 Score=176.54 Aligned_cols=208 Identities=20% Similarity=0.227 Sum_probs=195.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCC
Q 012805 34 RTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKR 113 (456)
Q Consensus 34 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~ 113 (456)
+.+++..|++++.++|..+.++.......+.+.+++++|++.+++++++.++.++ ...+..|++++.++.++|++|+||
T Consensus 234 ~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~-~~~~~~gi~~a~~~lvG~~~Ga~~ 312 (455)
T COG0534 234 KPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASF-IFMPPFGIAQAVTILVGQNLGAGN 312 (455)
T ss_pred CCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4556899999999999999999999999999999999999999999999999999 888999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHH
Q 012805 114 YYMLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI 192 (456)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (456)
+|++++..+.+..++..+++...++ +.+.+++..+|..|+++.+.+..++++..+..++...+....+.+||.||+|.+
T Consensus 313 ~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~ 392 (455)
T COG0534 313 YKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIP 392 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 9999999999999999999877764 889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhcC
Q 012805 193 AWVSLVA-LLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (456)
Q Consensus 193 ~~~~~~~-~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 243 (456)
+..++++ ..+.+++.+++.+.. +|..|.+++...++.+..+...++++++
T Consensus 393 ~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~ 443 (455)
T COG0534 393 FIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRG 443 (455)
T ss_pred HHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999997 677788888888764 6999999999999999999999888875
No 21
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.85 E-value=2.4e-19 Score=175.69 Aligned_cols=196 Identities=14% Similarity=0.135 Sum_probs=186.2
Q ss_pred HhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCh
Q 012805 257 FSGLWQFVKLSAASGVMLCLENWYYRILISMTGNL-QNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNG 335 (456)
Q Consensus 257 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~va~~~i~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~ 335 (456)
++..|++++.++|..++++.+.+...+|+.+++++ | ++++++++++.++..+...+..+++.+..+.++|++|+||+
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g--~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVG--AEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCH
Confidence 35779999999999999999999999999999997 5 77999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhH
Q 012805 336 KGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVA 415 (456)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 415 (456)
|++++..+.+..++..++++.+++...+++++..+++.|+++.+.+..++++..++.++..+.....+++++.||++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhcCchhHHHHHHHHhhhhc
Q 012805 416 YINLGCYYLIGVPLGCLMGWVFHQGVMVCTLNFSLAKLLK 455 (456)
Q Consensus 416 ~~~~~~~~i~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~ 455 (456)
..++.+ .++++++.+++...+++|+.|++++..+++++.
T Consensus 166 ~~~~~~-~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~ 204 (453)
T PRK09575 166 GLMVIG-ALINIVLDYLFIGWLDWGLTGAAIATALAQLVV 204 (453)
T ss_pred HHHHHH-HHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 999988 599999999999888899999999999998763
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.82 E-value=1.9e-17 Score=165.47 Aligned_cols=204 Identities=13% Similarity=0.086 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCcch
Q 012805 37 WVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYM 116 (456)
Q Consensus 37 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 116 (456)
++..|++++.+.|..+++....+...+|+.+.+++|++++++++.+.++..+....+..+++++..|.+++..+++|+++
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~ 298 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNE 298 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 45789999999999999999999999999886668999999999999999874455678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC----CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhH
Q 012805 117 LGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQ----PDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMV 191 (456)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 191 (456)
.++.+++........+++...+ ..+.+++..++.. +++..+.+..++++++++.++..+.....+.+++.||+|.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~ 378 (502)
T TIGR01695 299 LRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRT 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCcc
Confidence 9999999999999999888765 7888899888755 5567888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhc
Q 012805 192 IAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSC 242 (456)
Q Consensus 192 ~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 242 (456)
++..+....++++++++++++.+ |..|+++++.+++.+..++..++.+|
T Consensus 379 ~~~~~~~~~~i~i~l~~~l~~~~--G~~G~~~a~~i~~~~~~~~~~~~~~~ 427 (502)
T TIGR01695 379 PFINSVISVVLNALLSLLLIFPL--GLVGIALATSAASMVSSVLLYLMLNR 427 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998764 89999999999999999888877776
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.82 E-value=1.5e-16 Score=145.85 Aligned_cols=270 Identities=14% Similarity=0.110 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCcchHHHHHH
Q 012805 44 WYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQ 122 (456)
Q Consensus 44 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 122 (456)
.|.+.....+++...+.+++...+++| +|+|++|.++....+..++......|++++..+.+++...+ +++.+++..
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 577888999999999999999999999 79999999999999999866667999999998888886432 344455555
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 012805 123 RSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLV 202 (456)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 202 (456)
.......+.+++..+..... ..++.++ ... .+........+..........++++.++.+.....++...+.
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~----~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIA----SFFGNPS-LSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHcCCch-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444444444333332221 1333332 211 122222222257788888999999999999999999999888
Q ss_pred HHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCHhhHhcHHHHHHHHhHHHHHHHHHHHHHH
Q 012805 203 HIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYR 282 (456)
Q Consensus 203 ~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~ 282 (456)
..++..++... +.+..+..++..++..+...+...+.+|+. +.++ ...+++..|++++++.|..+++....+..+
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKL-RPRF---SFFSKKFFKEILRFGLPLFLSSLLSWLYSQ 226 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccc---cccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777666654 335889999999999998888888877642 2222 222246899999999999999999999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012805 283 ILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANE 329 (456)
Q Consensus 283 ~~~~~~~~~~~~~~~va~~~i~~~i~~~~~~~~~~l~~~~~p~~~~~ 329 (456)
.|.++++.+.+ .+++|.|+++.++......+..++.++..|.+++.
T Consensus 227 ~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 227 IDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred hHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999874 88999999999999999999999999999999875
No 24
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.76 E-value=1.1e-15 Score=149.03 Aligned_cols=205 Identities=15% Similarity=0.120 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCcch
Q 012805 37 WVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYM 116 (456)
Q Consensus 37 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 116 (456)
.+..|++++...|..++....++...+|+.+.+++++.++++++.+.++.++....+..+++++..|..++...++|.++
T Consensus 194 ~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~ 273 (451)
T PF03023_consen 194 DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEE 273 (451)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 34588999999999999999999999999999999999999999999999997778888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhH
Q 012805 117 LGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLG----QPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMV 191 (456)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 191 (456)
.++.+++++.....+.+|..+. ..+.++++..+. .+++-.+.....+++++++.++..+...+...+.+.||+|.
T Consensus 274 ~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~ 353 (451)
T PF03023_consen 274 FRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKT 353 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHh
Confidence 9999999999999999999865 889999997763 35666777889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhcC
Q 012805 192 IAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (456)
Q Consensus 192 ~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 243 (456)
++..++++.++|++++.++...+ |..|.++++.++..+..++.+..++|+
T Consensus 354 ~~~~~~~~~~lni~l~~~l~~~~--g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 354 PVRISVISVVLNIILSILLVPFF--GVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888775 999999999999999999999888874
No 25
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.76 E-value=1e-18 Score=146.89 Aligned_cols=162 Identities=23% Similarity=0.389 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 012805 269 ASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVT 348 (456)
Q Consensus 269 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~i~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~ 348 (456)
|..++++.+.+.+.+++.+++++| ++++++++++.++.++...+..+++++..+.+++++|++|++++++..+++..+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 888999999999999999999996 779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHhhhHH
Q 012805 349 SVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVP 428 (456)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~ 428 (456)
...++++.++.+..+++++..+|++|+++.+.+.+++++..++.++.++.....+++++.||+|.+++.++.+.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHH
Q 012805 429 LGCL 432 (456)
Q Consensus 429 ~~~~ 432 (456)
+.|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9874
No 26
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.75 E-value=3.4e-16 Score=148.47 Aligned_cols=184 Identities=18% Similarity=0.216 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 012805 269 ASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVT 348 (456)
Q Consensus 269 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~i~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~ 348 (456)
|.++++....+...+++.++++++ ++++++|+++.++..+...+..+++++..|.++++.|++|.|++++..+....+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 678888999999999999999988 678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHhhhHH
Q 012805 349 SVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVP 428 (456)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~ 428 (456)
...++++.+++.+.+++++..+++.|++..+.+..++++++++.++.++......++++.||.+.+.+.++++ .++.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~-~~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIG-NVINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999987788888999999999999999999999999999999999999999988 488999
Q ss_pred HHHHHHH-Hhc-CchhHHHHHHHHhhhhc
Q 012805 429 LGCLMGW-VFH-QGVMVCTLNFSLAKLLK 455 (456)
Q Consensus 429 ~~~~l~~-~~~-~g~~g~~~~~~~~~~~~ 455 (456)
..+++.+ .++ +|+.|++++..+++++.
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~ 186 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLM 186 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHH
Confidence 9888887 677 78999999999988753
No 27
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.75 E-value=4.1e-16 Score=155.29 Aligned_cols=204 Identities=14% Similarity=0.116 Sum_probs=172.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChH---------HHHHH-HHHHHHHHHHHHHHHHHHHHhHH
Q 012805 34 RTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDI---------ELAAI-SIANNVIVGFDFGLLLGMASALE 102 (456)
Q Consensus 34 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~---------~~~~~-~~~~~~~~~~~~~~~~gl~~~~~ 102 (456)
+..++..|++++.++|..++++...+...+|+.++++ +++. .+|.+ +++.++..+ ...+..+++.+..
T Consensus 218 ~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~-~~~~~~~l~~~~~ 296 (488)
T TIGR02900 218 SEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTF-PAVITSSLSTALV 296 (488)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHh-HHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999988 4321 22222 344556666 5667889999999
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 012805 103 TLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQR 181 (456)
Q Consensus 103 ~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~ 181 (456)
|.++++.+++|+++.++..++...+....+++..++ ..+.++++.++..++ ++.+++++++++.++..+.....+
T Consensus 297 p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~ 372 (488)
T TIGR02900 297 PDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQS 372 (488)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887765 778888888876443 367789999999999999999999
Q ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhc
Q 012805 182 FLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSC 242 (456)
Q Consensus 182 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 242 (456)
.+++.||+|.+++.++...+++++++++++....+|+.|+++++.+++.+..++..++.+|
T Consensus 373 ~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 373 ILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998873223599999999999999999888887765
No 28
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.73 E-value=2.9e-14 Score=137.04 Aligned_cols=204 Identities=14% Similarity=0.125 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCcchH
Q 012805 38 VESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYML 117 (456)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 117 (456)
+..|++.+...|..++...+++...+|+.+.+.+.+.+.+.+..++.+.++..-.+..++++...|..||+..++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 67899999999999999999999999999999999999999999999999977789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHH
Q 012805 118 GVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLG----QPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI 192 (456)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (456)
++..+.++.++.+..+|...+ ..+.+|+...+. .+++....+.+.+....++.++..+..++...+.+++|+|.|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 999999999999999999875 888999997652 244556667788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhcC
Q 012805 193 AWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (456)
Q Consensus 193 ~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 243 (456)
+++.+++.++|+.+++.+...+ |..|.++++.++.++++.++++..+|+
T Consensus 389 ~~i~ii~~~~n~~l~~~l~~~~--~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 389 MKIAIISLVVNILLNLLLIPPL--GHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999997777665 888899999999999999998888875
No 29
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.73 E-value=2.9e-18 Score=144.07 Aligned_cols=160 Identities=26% Similarity=0.386 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCcchHHHHHHHHHHHH
Q 012805 49 PAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVL 128 (456)
Q Consensus 49 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 128 (456)
|.++++++..+...+|..+++++|++++++++++.++..+ ...+..|++.+..+.++|.+|++|+|++++.++.++.++
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~-~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSI-LFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-Hhhhcccccccccceeecccccccccccccccccccccc
Confidence 8899999999999999999999999999999999999998 777999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH-HHHHHH
Q 012805 129 FVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVAL-LVHIFV 206 (456)
Q Consensus 129 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~~ 206 (456)
..++++..+. ..+.+++..+++.|+++.+.+.+|+++..+..++..+....++++++.||+|.++..+++.. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999888875 88888899999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HHH
Q 012805 207 SWL 209 (456)
Q Consensus 207 ~~~ 209 (456)
+|+
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 875
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.70 E-value=8.5e-14 Score=138.66 Aligned_cols=200 Identities=13% Similarity=-0.006 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCcc
Q 012805 37 WVESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYY 115 (456)
Q Consensus 37 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 115 (456)
++..|++++++.|...+++...+...+|+.++++ +|++++|.|+.+.++.......+...++....|..++. ++|++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 4568999999999999999999999999999999 69999999999999998745556666778888999885 67888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHH
Q 012805 116 MLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAW 194 (456)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (456)
+.++.+++........++++.++ ....++++.++.+++ +..+...++++++...+..+.......+++.||+|....
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 358 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence 89999999999888888887765 778888888776654 567889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhc
Q 012805 195 VSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSC 242 (456)
Q Consensus 195 ~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 242 (456)
.+++..++.++..+.+... +|+.|+++++.+++.+......++..|
T Consensus 359 ~~~~~~~~~i~~~~~~~~~--~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 359 WNVFKTFLFIPAIVIGGQL--AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888888877666654 399999999999999988888877754
No 31
>PRK15099 O-antigen translocase; Provisional
Probab=99.68 E-value=1.8e-14 Score=140.17 Aligned_cols=199 Identities=7% Similarity=-0.051 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCc
Q 012805 36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRY 114 (456)
Q Consensus 36 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 114 (456)
+++..|++++++.|..+++....+....|+.++++ +|++++|.|+.+.++...+...+..+++++..|.+++. +|+
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~ 286 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEK 286 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCh
Confidence 46778999999999999999999999999999985 89999999999999988546789999999999999995 567
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHH
Q 012805 115 YMLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIA 193 (456)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (456)
++.++.+++........+++...+ .++.++++.++..++ .+++.+++++++++.++............+.++++...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~ 364 (416)
T PRK15099 287 RDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYI 364 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888988888888888777654 688899999887765 44577889999999998888888777788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHh
Q 012805 194 WVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVS 241 (456)
Q Consensus 194 ~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~ 241 (456)
...+...++++++++++++.+ |..|+++++.+++.+...+......
T Consensus 365 ~~~~~~~~l~i~l~~~li~~~--G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 365 LAEVSQFTLLTGFAHWLIPLH--GALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876 9999999999999999887765554
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.68 E-value=3.5e-13 Score=121.83 Aligned_cols=247 Identities=13% Similarity=0.100 Sum_probs=178.9
Q ss_pred HHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 012805 59 SMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLP 137 (456)
Q Consensus 59 ~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (456)
..+++...+++| +|++++|.++....+..+.......|++..... ..++|+++.++..+.......+.++...+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888999 799999999999999998555557777766444 23455666666666555544444433332
Q ss_pred HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 012805 138 LYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLG 217 (456)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g 217 (456)
+.. .+...+ .+++ ...++....+..+........++.+++.+|.+..........+........+... +.+
T Consensus 77 ~~~---~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 147 (251)
T PF13440_consen 77 LAI---LIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLN 147 (251)
T ss_pred HHH---HHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence 211 111223 3332 2334566777788889999999999999999999999999988885554444443 348
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCHhhHhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 012805 218 VIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIA 297 (456)
Q Consensus 218 ~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (456)
..+..++..++..+..++.+...+++ .+. ++ +.+..| .++.+.|..+.........+.+..+++.+- +.++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~~~ 218 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLRRK-LRL--SF----KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GPEA 218 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-cCC--Cc----hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHH
Confidence 88899999999888777666644322 111 11 122334 799999999999999999999999999943 3889
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 012805 298 VDALSICMTINGWEM-MIPLAFFAGTGVRVAN 328 (456)
Q Consensus 298 va~~~i~~~i~~~~~-~~~~~l~~~~~p~~~~ 328 (456)
+|.|+++.++..... .+..++++...|++++
T Consensus 219 ~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 219 VGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999888 9999999999999986
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.60 E-value=4.2e-13 Score=133.33 Aligned_cols=185 Identities=18% Similarity=0.222 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCc
Q 012805 36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRY 114 (456)
Q Consensus 36 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 114 (456)
.++..|+.++.++|...+.+...+.+.+|+.++++ +|++++|.|+.+.++... ...+...++.+..|.+++...++|+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~-~~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSL-LLIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHH-HHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 47789999999999999999999999999999999 799999999988888887 8889999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHH
Q 012805 115 YMLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIA 193 (456)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (456)
++.++..++........+++..++ ..+.++++..+..++ +..+...++++++..++..+.......+++.||.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999998875 788888888776655 33377889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhHHHH
Q 012805 194 WVSLVALLVHIFVSWLFVNRMQLGVIGTAATL 225 (456)
Q Consensus 194 ~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~ 225 (456)
..+.++.++|+++++++++.+ |..|++.++
T Consensus 365 ~~~~~~~i~~~~l~~~li~~~--g~~g~~~a~ 394 (480)
T COG2244 365 LISLISALLNLILNLLLIPRF--GLIGAAIAT 394 (480)
T ss_pred HHHHHHHHHHHHHHhHHHHhh--hhhhHHHHH
Confidence 999999999999999999876 888888888
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.21 E-value=3.6e-08 Score=97.26 Aligned_cols=410 Identities=10% Similarity=-0.020 Sum_probs=236.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHhcCCCcchHHHHH
Q 012805 44 WYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVG-FDFGLLLGMASALETLCGQAFGAKRYYMLGVYM 121 (456)
Q Consensus 44 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~-~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~ 121 (456)
.+-+.-.++.++...+.+++-+.++-| ++|+.+|..++=..+..- +.+..=.++-.+.++.-.+...++|.++..+..
T Consensus 4 ~~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~ 83 (549)
T PF04506_consen 4 AKGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLL 83 (549)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhcc
Confidence 345566788899999999988888888 799999988665555442 233344567766544332221111222222222
Q ss_pred HHHHHHHHHHHHHHHHHHH--hH--HH--HHHHc-CCCHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHhcc
Q 012805 122 QRSWIVLFVCCVLLLPLYL--FA--SP--VLKLL-GQPDD---VAELSGMVSIWMIPLHFSFAFQFPLQRF----LQSQL 187 (456)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~--~~--~~--~~~~~-~~~~~---~~~~a~~~l~~~~~~~~~~~~~~~~~~~----l~~~~ 187 (456)
+.......+..+++..+.. .. .. ...+. ...++ ..+.....+.+...+.+...+...+-.. +.-.-
T Consensus 84 wls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~ 163 (549)
T PF04506_consen 84 WLSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKL 163 (549)
T ss_pred cccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhe
Confidence 2222222222221111111 00 00 11111 11111 1222333444555555555555544333 33334
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH-hcCCccc-----h-hHHHHHHHHHHHHHHHHH-HHh-cC-C---ccccCCCCCH
Q 012805 188 KNMVIAWVSLVALLVHIFVSWLFVN-RMQLGVI-----G-TAATLNFSWWILVFGLFG-YVS-CG-G---CPLTWTGFTL 254 (456)
Q Consensus 188 ~~~~~~~~~~~~~~~~i~~~~~li~-~~~~g~~-----g-~a~a~~i~~~~~~~~~~~-~~~-~~-~---~~~~~~~~~~ 254 (456)
|.+.-........+.+....+.... .++++.. + +.++..++++........ +.. .. . .+...++...
T Consensus 164 Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~ 243 (549)
T PF04506_consen 164 RVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISS 243 (549)
T ss_pred eeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhccccccc
Confidence 4444444444444444443333321 1112211 1 233444444433322221 111 11 1 1111122211
Q ss_pred ---hhHhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 012805 255 ---EAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGN--LQNAEIAVDALSICMTINGWEM-MIPLAFFAGTGVRVAN 328 (456)
Q Consensus 255 ---~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~va~~~i~~~i~~~~~-~~~~~l~~~~~p~~~~ 328 (456)
.....-++.++.....+..++...+..+.+..++.. +.+ .++-|.|++++++.++.. .+.+.+-.+.....++
T Consensus 244 ~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk 322 (549)
T PF04506_consen 244 GNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSK 322 (549)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHH
Confidence 111124789999999999999999999999998888 665 667789999999988765 6667788888888888
Q ss_pred hhhCCCh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHhhHHH
Q 012805 329 ELGAGNG---------KGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQP 399 (456)
Q Consensus 329 ~~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 399 (456)
...+++. +++.+.....++....+++.+...-...++.+..++.+++=....+...++.++...++.++++
T Consensus 323 ~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NG 402 (549)
T PF04506_consen 323 LLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAING 402 (549)
T ss_pred HhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHcc
Confidence 7765433 4466667777777777777666666666677777765543223346889999999999999999
Q ss_pred HHHHHHhccCcchhhHHHHHH--HHHhhhHHHHHHHHHHhcCchhHHHHHHHHhhhhc
Q 012805 400 ILSGVAVGSGWQSYVAYINLG--CYYLIGVPLGCLMGWVFHQGVMVCTLNFSLAKLLK 455 (456)
Q Consensus 400 ~~~~~l~~~g~~~~~~~~~~~--~~~i~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~ 455 (456)
+.....++..+.+.....+-. ...++.+..++++... ++|..|..++-.+.+.+|
T Consensus 403 i~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lR 459 (549)
T PF04506_consen 403 ITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLR 459 (549)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHH
Confidence 999999998887765443322 2246667778888876 779999999988877665
No 35
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.13 E-value=3.1e-09 Score=103.23 Aligned_cols=195 Identities=13% Similarity=0.136 Sum_probs=177.7
Q ss_pred HhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhCCCh
Q 012805 257 FSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGW-EMMIPLAFFAGTGVRVANELGAGNG 335 (456)
Q Consensus 257 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~i~~~i~~~-~~~~~~~l~~~~~p~~~~~~g~~~~ 335 (456)
+++.|++.+++.|..+....+.....++..+.+++| +.++++.+++++..+. -+-+..++..+..+..+|.+|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 568899999999999999999999999999999999 5588899999888776 4567789999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhH
Q 012805 336 KGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVA 415 (456)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 415 (456)
+..-...+++........+|.+... .+.+++...++.|+++...+..+.+......+...........+++.+++....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l~-~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLLI-LNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHH-HccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 9999999999988888888876655 456999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhcCchhHHHHHHHHhhhhc
Q 012805 416 YINLGCYYLIGVPLGCLMGWVFHQGVMVCTLNFSLAKLLK 455 (456)
Q Consensus 416 ~~~~~~~~i~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~ 455 (456)
++...+ ..+.+++.+++.+..++|..|..++..+++++.
T Consensus 181 ~~~~~~-~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~ 219 (473)
T KOG1347|consen 181 VIGLVA-LVLHILLTWLLVSKLGLGIKGAALALVASYWLN 219 (473)
T ss_pred HHHHHH-HHHHHHHHHHhhhcccCCCccchHHHHHHHHHH
Confidence 999888 699999999999999999999999999988763
No 36
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.96 E-value=2.2e-05 Score=73.03 Aligned_cols=402 Identities=14% Similarity=0.013 Sum_probs=225.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHhcCCC---c
Q 012805 40 SKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVG-FDFGLLLGMASALETLCGQAFGAKR---Y 114 (456)
Q Consensus 40 ~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~-~~~~~~~gl~~~~~~~~s~~~g~~~---~ 114 (456)
..+-.+.+.-.+..+++..+.+++-+.++-| ++++.+|..++-..+.+- +.+..--++.-+. ...|..+ .
T Consensus 7 L~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A~-----l~~gs~~~d~~ 81 (530)
T KOG2864|consen 7 LESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLAE-----LRIGSEPADTW 81 (530)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHHh-----ccCCCCCCccH
Confidence 3445566667777888888888777777777 799999999887766663 1222223444432 2223222 3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHH
Q 012805 115 YMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDD-VAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIA 193 (456)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (456)
++..+..+.+.-+..+..+.+.-++.-.... .|+. ..+.-...+.+...+.....+...+.-..|..-+.+.-.
T Consensus 82 te~~n~~wlS~~L~~~i~~~~i~~wl~~~~s-----~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~ 156 (530)
T KOG2864|consen 82 TEFINLLWLSVPLQTAINVACIYFWLGFLSS-----SDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRA 156 (530)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHhhc-----cchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3444444444444444443333222111111 1111 111111223333444444444555555555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-C-CccchhHHHHHHHHHHHHHHHH-HHHhcCC-cccc---------CCCCCHh--hHh
Q 012805 194 WVSLVALLVHIFVSWLFVNRM-Q-LGVIGTAATLNFSWWILVFGLF-GYVSCGG-CPLT---------WTGFTLE--AFS 258 (456)
Q Consensus 194 ~~~~~~~~~~i~~~~~li~~~-~-~g~~g~a~a~~i~~~~~~~~~~-~~~~~~~-~~~~---------~~~~~~~--~~~ 258 (456)
+..-+..++.-+..+...+.. + +++..-|+|.........+... .|++.++ .+.. +++.... ...
T Consensus 157 i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~f 236 (530)
T KOG2864|consen 157 IAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIF 236 (530)
T ss_pred HHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcccc
Confidence 666666555533333333321 1 2445555555555443333222 2222222 0000 1111100 000
Q ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhCCC
Q 012805 259 GLWQFVKLSAASGVMLCLENWYYRILISMTGNL---QNAEIAVDALSICMTINGWEM-MIPLAFFAGTGVRVANELGAGN 334 (456)
Q Consensus 259 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~va~~~i~~~i~~~~~-~~~~~l~~~~~p~~~~~~g~~~ 334 (456)
.-++..+.-....-+.+...+...-+..++... ..+++ |.|.++++.-++.. ++...+-.......++...+++
T Consensus 237 fd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~Q--gvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~ 314 (530)
T KOG2864|consen 237 FDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQ--GVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDN 314 (530)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchh--hHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccc
Confidence 224556666666666777777777777766633 21243 48999988877655 6667788888888888777766
Q ss_pred hhHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcc
Q 012805 335 GKGAKFA---TIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQ 411 (456)
Q Consensus 335 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~ 411 (456)
.|+.++. ..+..+....+++...+.-...++....++++++=.-..+...++++|...++.+++.+..+...+.++.
T Consensus 315 qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~ 394 (530)
T KOG2864|consen 315 QENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATS 394 (530)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccH
Confidence 5555544 4455555555555555555555666777776543222335688999999999999999999999988877
Q ss_pred hhhHHHHH--HHHHhhhHHHHHHHHHHhcCchhHHHHHHHHhhhhc
Q 012805 412 SYVAYINL--GCYYLIGVPLGCLMGWVFHQGVMVCTLNFSLAKLLK 455 (456)
Q Consensus 412 ~~~~~~~~--~~~~i~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~ 455 (456)
+....-+- ...-++.+.+++++...+ |..|..++-.+...+|
T Consensus 395 ~qi~~~n~~mlafSviflilsylL~~~~--~~~GlIlANiiNm~lR 438 (530)
T KOG2864|consen 395 RQIDKHNKFMLAFSVIFLILSYLLIRWF--GLVGLILANIINMSLR 438 (530)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHh--chhHHHHHHHHHHHHH
Confidence 66543221 122466778899999988 7899888877766544
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.92 E-value=9e-06 Score=72.23 Aligned_cols=313 Identities=12% Similarity=0.056 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c-Ch-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCc
Q 012805 38 VESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-L-GD-IELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRY 114 (456)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-l-g~-~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 114 (456)
...+.+.++-+|+.++..+..+.-.+-+.-++| - .+ +.+++|+++..+.-+ ...+...+......+ +++++
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf-~~sp~~~~~~igl~~-----V~s~r 81 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLF-FASPLSMFHHIGLVF-----VNSKR 81 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHH-HhChhhhhHHHHHHH-----hcchh
Confidence 357789999999999999999999888888987 3 22 458999999999887 666766666554433 34433
Q ss_pred chHHHHHHHHHHHHHHHHHHHH-HHH-HhHHHHH-HHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhH
Q 012805 115 YMLGVYMQRSWIVLFVCCVLLL-PLY-LFASPVL-KLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMV 191 (456)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~-~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 191 (456)
++- +.+.-....+.+...+.. +.+ .....++ ..++.++++.+.+...+.++.+..++.++....++++.=.+++..
T Consensus 82 srr-~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SRR-KAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 322 222222222222222222 223 3344444 556889999999999999999999999999999998886677766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-cCC--ccchhHHHHHHHHHHHHHHHH-HHHhc-CCccccCCCCCHhhHhcHHHHHHH
Q 012805 192 IAWVSLVALLVHIFVSWLFVNR-MQL--GVIGTAATLNFSWWILVFGLF-GYVSC-GGCPLTWTGFTLEAFSGLWQFVKL 266 (456)
Q Consensus 192 ~~~~~~~~~~~~i~~~~~li~~-~~~--g~~g~a~a~~i~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 266 (456)
....++......++...+++.. ++. +..--.++...+..+.+.+.. -|+.. ++.+....+.......-+++++++
T Consensus 161 V~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F 240 (345)
T PF07260_consen 161 VGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKF 240 (345)
T ss_pred eehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHH
Confidence 6666665555555544445431 110 111111222222222221111 11111 121222222222223468999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhc-CCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCChhHH----
Q 012805 267 SAASGVMLCLENWYYRILISMTGN-LQNA---EIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGA---- 338 (456)
Q Consensus 267 ~~p~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~va~~~i~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~---- 338 (456)
.+|.+.....+.+.--+.+.++++ +++. .+++|...+.+-..-..+...+-+ .+..|..-+. ++.++.
T Consensus 241 ~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y~w~~~~-r~~~paf~~~---~~~~~~~~~~ 316 (345)
T PF07260_consen 241 WWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPYGWLTEL-RAVYPAFDKN---NPQNKLRNCG 316 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcchhHHhH-HhhCchhhcc---Cccccccccc
Confidence 999999999999999999999999 4432 244554443333222222222221 2233333221 222333
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHH
Q 012805 339 ----KFATIVSVVTSVIIGLFFWLLIM 361 (456)
Q Consensus 339 ----~~~~~~~~~~~~~~~~~~~~~~~ 361 (456)
+..+++....++.+++..+..++
T Consensus 317 ~~v~~~~~~kf~~~c~~~sl~~~f~~f 343 (345)
T PF07260_consen 317 NPVTQSHISKFVVLCLLLSLALCFVMF 343 (345)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23667777777777777666654
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.56 E-value=1e-05 Score=66.19 Aligned_cols=79 Identities=19% Similarity=0.231 Sum_probs=73.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhc
Q 012805 163 SIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSC 242 (456)
Q Consensus 163 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 242 (456)
+++++++.++..+....++.+++.||+|..+..+..+.++|+++++++++.+ |..|+++++.+++.....+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~~--G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPRF--GIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999998765 99999999999999999888888876
Q ss_pred C
Q 012805 243 G 243 (456)
Q Consensus 243 ~ 243 (456)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 3
No 39
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.54 E-value=2.1e-05 Score=77.98 Aligned_cols=203 Identities=9% Similarity=0.006 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--c-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCc--
Q 012805 40 SKKLWYIVGPAIFSRLASYSMLVITQAFAGH--L-GDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRY-- 114 (456)
Q Consensus 40 ~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~--l-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~-- 114 (456)
-++.++.......+.+...+.+=-|++++.. + ..++-|.|++++++-+++.=.+...+....-...++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 4678888999999999999999999999999 5 7899999999999999888888999999988888988765433
Q ss_pred -------chHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Q 012805 115 -------YMLGVYMQRSWIVLFVCCVLLLP-LYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQ 186 (456)
Q Consensus 115 -------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~ 186 (456)
++..+.+...+.+...++++... +-...+.++.++++++-..+.+...++..+..+|+.+++.+..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 33555666666777777766554 3667777777765544444456778999999999999999999999988
Q ss_pred cchhHHHH---HHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhcC
Q 012805 187 LKNMVIAW---VSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (456)
Q Consensus 187 ~~~~~~~~---~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 243 (456)
...+.... ......++.+..+++++.. ++|..|..+|.++......+..+.+.++.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655444 4444566777788888876 77999999999999999988888888764
No 40
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.02 E-value=0.0039 Score=58.50 Aligned_cols=201 Identities=8% Similarity=0.031 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCcchH
Q 012805 41 KKLWYIVGPAIFSRLASYSMLVITQAFAGH---LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYML 117 (456)
Q Consensus 41 ~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~---lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 117 (456)
++..|.......+.++.++.+=-|.++++. +.-++-|.|.+..++-++..-.+...+.-....+.+|...++++|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 344555555566677788888888888884 36678889999988888777788888888888889998888777776
Q ss_pred HHHHH---HHHHHHHHHHHHHH-HHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHH
Q 012805 118 GVYMQ---RSWIVLFVCCVLLL-PLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIA 193 (456)
Q Consensus 118 ~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (456)
++... ..+.+...+++... .+....+..+.+.++++-....+...+++.+..+++.+++.+..++..+.+..+..-
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 66554 44444455553333 234556666666666544444456789999999999999999999999887665544
Q ss_pred H---HHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhcC
Q 012805 194 W---VSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (456)
Q Consensus 194 ~---~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 243 (456)
. ...+..++.++.+++++..+ |..|..+|.++...+.-+...++.++.
T Consensus 399 ~~n~~mlafSviflilsylL~~~~--~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 399 KHNKFMLAFSVIFLILSYLLIRWF--GLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred hcccchhHHHHHHHHHHHHHHHHh--chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 44555777888999999887 779999999998887777776666653
No 41
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.66 E-value=0.016 Score=52.54 Aligned_cols=176 Identities=18% Similarity=0.132 Sum_probs=103.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhCCChhHHHHHHH
Q 012805 265 KLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMI-PLAFFAGTGVRVANELGAGNGKGAKFATI 343 (456)
Q Consensus 265 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~i~~~i~~~~~~~-~~~l~~~~~p~~~~~~g~~~~~~~~~~~~ 343 (456)
|.+......+....+...+...++.+.-+ .++.|.|+....+.++...+ ..++.++..-..++...+ .++.++...
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l~-~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYLG-PEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 44555556666666556665555555543 78999999999999888876 677888887777765443 233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHH
Q 012805 344 VSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYY 423 (456)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 423 (456)
..........+..... ..+...+.+++. . ...........++..........+++.++.+.....++...
T Consensus 80 ~~~~~~~~~~~i~~~~-----~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLI-----LLIASFFGNPSL--S--LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS- 149 (273)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHcCCchH--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3333333222222222 222223433321 1 11122222222578888889999999999999888888774
Q ss_pred hhhHHHHHHHHHHhcCchhHHHHHHHHhhhh
Q 012805 424 LIGVPLGCLMGWVFHQGVMVCTLNFSLAKLL 454 (456)
Q Consensus 424 i~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~ 454 (456)
+..+...+.+.... .++.+...+..+++++
T Consensus 150 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 179 (273)
T PF01943_consen 150 LLSLLLILLLLFLG-SSLWGFLLGLVISSLV 179 (273)
T ss_pred HHHHHHHHHHHHHh-hhHHHHHHHHHHHHHH
Confidence 55554444444433 2477777777776654
No 42
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.57 E-value=0.023 Score=50.85 Aligned_cols=154 Identities=15% Similarity=0.210 Sum_probs=95.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012805 284 LISMTGNLQNAEIAVDALSICMTINGWEMMIP-LAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMI 362 (456)
Q Consensus 284 ~~~~~~~~~~~~~~va~~~i~~~i~~~~~~~~-~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (456)
...++++.-+ .++.|.|+....+..+...+. .++.+...- ..++|.++.++..+..............++...
T Consensus 7 ~~~~lar~l~-~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (251)
T PF13440_consen 7 FLILLARYLG-PEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILAIL 80 (251)
T ss_pred HHHHHHHHCC-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454442 788999999999988888764 444333322 234556666666666555544444443333222
Q ss_pred hhhhhcccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHhhhHHHHHHHHHHhcCchh
Q 012805 363 YHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWVFHQGVM 442 (456)
Q Consensus 363 ~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~~~~~l~~~~~~g~~ 442 (456)
. ...+ ++++ ...++.+..+..++..+.......+++.+|.+.......... +..+.+...+. ..+.++.
T Consensus 81 ~----~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~ 149 (251)
T PF13440_consen 81 I----AYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLL-YLGLNLW 149 (251)
T ss_pred H----HHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHH-HHHhhHH
Confidence 2 2233 3332 334556777778888999999999999999999988888875 44433333333 3333788
Q ss_pred HHHHHHHHhhhh
Q 012805 443 VCTLNFSLAKLL 454 (456)
Q Consensus 443 g~~~~~~~~~~~ 454 (456)
+..++..+++++
T Consensus 150 ~~~~~~~~~~~~ 161 (251)
T PF13440_consen 150 SILLAFIISALL 161 (251)
T ss_pred HHHHHHHHHHHH
Confidence 888887777654
No 43
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=97.51 E-value=0.00051 Score=56.08 Aligned_cols=67 Identities=15% Similarity=0.254 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHHHHHHhhhh
Q 012805 385 SILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWVFHQGVMVCTLNFSLAKLL 454 (456)
Q Consensus 385 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~ 454 (456)
+++++++.++.++....+..+++.||+|..++.++.+ .++++++.+++.+.+ |..|+.++..+++++
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~-~~v~i~~~~~li~~~--G~~Gaa~a~~i~~~~ 68 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIG-AIVNIILNYILIPRF--GIYGAAIATAISEIV 68 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHHHHHHHHHHHH--HHhHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999988 699999999998767 999999999999875
No 44
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.32 E-value=0.13 Score=47.38 Aligned_cols=337 Identities=12% Similarity=0.025 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 012805 89 FDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIP 168 (456)
Q Consensus 89 ~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 168 (456)
+...+..|+....++++|...=+||.+++...+.-...+....+..... ++-..+++.. ..|=...+.
T Consensus 72 fS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~-------~vf~~~~~~s-----i~yk~l~~~ 139 (467)
T COG4267 72 FSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGL-------IVFFVNNQYS-----IVYKILACA 139 (467)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH-------HhhhhcCchh-----HHHHHHHHH
Confidence 3566888999999999999888888777665554333333322222221 1111122221 122233444
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 012805 169 LHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLT 248 (456)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~ 248 (456)
.....+...+...++.+.+|.|.....-.++.++.+.+..++-.. ++.|..++..++..........+..|.-..++
T Consensus 140 ~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~~---~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~ 216 (467)
T COG4267 140 LFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLKS---PIEGLLLTLDIGIFIILFLLNFYILRYFKSSR 216 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHhHHHHHHHHHHHHHHhccccc
Confidence 555667778888899999999999998888888888877666543 89999999999988888777777665411111
Q ss_pred CCCCCHhh-HhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChHH------HHHHHHHHHHHHHHHHHHH-----H
Q 012805 249 WTGFTLEA-FSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEI------AVDALSICMTINGWEMMIP-----L 316 (456)
Q Consensus 249 ~~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~------~va~~~i~~~i~~~~~~~~-----~ 316 (456)
+..++.-+ ++....+ .+......++-.+++.+.=.-+++++ +-..|.+..-...+...|. .
T Consensus 217 ~i~FdFL~~~~~y~SL-------llIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i 289 (467)
T COG4267 217 RIGFDFLLYRRKYPSL-------LLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLI 289 (467)
T ss_pred ccceehhhhhhcchHH-------HHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeee
Confidence 12222111 1111122 23334455555555554333222111 1113444444444444333 2
Q ss_pred HHHHHHHHHHHHhhhC----C-------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcHHHHHHHHHHH
Q 012805 317 AFFAGTGVRVANELGA----G-------NGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLS 385 (456)
Q Consensus 317 ~l~~~~~p~~~~~~g~----~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l 385 (456)
.+-+...+.--+.+.+ + +.++.....++...-.+-+-...++.++.+++.+...++-++. ..+.+
T Consensus 290 ~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~----~l~lF 365 (467)
T COG4267 290 SLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEY----YLDLF 365 (467)
T ss_pred eeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH----HHHHH
Confidence 3344444443332221 1 1222333334444444555566778888899999888875542 34455
Q ss_pred HHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHhhhHHHHHHHHHHh-cCchhHHHHHHHHhh
Q 012805 386 ILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWVF-HQGVMVCTLNFSLAK 452 (456)
Q Consensus 386 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~~~~~l~~~~-~~g~~g~~~~~~~~~ 452 (456)
.+-.++...+......-++..-.++-+..+..+..- .+.+-.+.++..... ++--+|...+..++-
T Consensus 366 ~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~f-li~N~ilT~i~l~lgp~~~g~gff~a~fl~v 432 (467)
T COG4267 366 YVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALF-LISNGILTFIFLELGPGYYGVGFFLASFLYV 432 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH-HHHhHHHHHHHHHhCccceehHHHHHHHHHH
Confidence 555555555555555555555666666666555444 466666666655432 233445555554443
No 45
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.27 E-value=0.092 Score=47.42 Aligned_cols=158 Identities=9% Similarity=0.108 Sum_probs=107.9
Q ss_pred hcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCChh
Q 012805 258 SGLWQFVKLSAASGVMLCLENWYYRILISMTGNL-QNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGK 336 (456)
Q Consensus 258 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~va~~~i~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~ 336 (456)
..++++.+.-.|.+++.....+.-++.+--+++- -+..+.+|+|+++..+.-++..+...+-+.....+.+ +.+
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~rs 82 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KRS 82 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hhh
Confidence 4688999999999999999999999888777763 3334669999999999999888887777666555432 212
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhhhh-hcccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhh
Q 012805 337 GAKFATIVSVVTSVIIGLF-FWLLIMIYHNE-LALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYV 414 (456)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 414 (456)
-++........+...... ..+..--+++. +-++++-|+++.+.+...+.++....+++++....++++-=.+++...
T Consensus 83 -rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV 161 (345)
T PF07260_consen 83 -RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIV 161 (345)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEe
Confidence 122222222111111111 11111122232 335566688999999999999999999999999999988866777666
Q ss_pred HHHHHHH
Q 012805 415 AYINLGC 421 (456)
Q Consensus 415 ~~~~~~~ 421 (456)
...++..
T Consensus 162 ~~aSI~~ 168 (345)
T PF07260_consen 162 GSASIAD 168 (345)
T ss_pred ehHHHHH
Confidence 6555554
No 46
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=70.74 E-value=29 Score=24.81 Aligned_cols=41 Identities=20% Similarity=0.081 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHH
Q 012805 315 PLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLF 355 (456)
Q Consensus 315 ~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 355 (456)
..-++-.....+-+.+.+||++++++..+++.+++..-...
T Consensus 33 lGi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 33 LGIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 34444555667788888999999999999998887654444
No 47
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=51.25 E-value=2.6e+02 Score=27.86 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=23.8
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchh
Q 012805 185 SQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGT 221 (456)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~ 221 (456)
-.-|+..........++.|.+..+.+.+.. ...|.
T Consensus 399 ~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~--~~~g~ 433 (485)
T KOG0569|consen 399 QSARSAAQSVATAVNWLSNFIVGFAFPPLQ--NVIGP 433 (485)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcc
Confidence 344666677777778888888887777654 44444
No 48
>COG4267 Predicted membrane protein [Function unknown]
Probab=45.62 E-value=2.8e+02 Score=26.53 Aligned_cols=123 Identities=13% Similarity=0.018 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHHHHHH
Q 012805 313 MIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTI 392 (456)
Q Consensus 313 ~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~ 392 (456)
.++.+++....-.+|+.+=+|+.++.+.-..-...+....+..++..++ ...++ +. ..+=...+...
T Consensus 75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf--------~~~~~---~s--i~yk~l~~~~F 141 (467)
T COG4267 75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF--------FVNNQ---YS--IVYKILACALF 141 (467)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh--------hhcCc---hh--HHHHHHHHHHH
Confidence 3445555566666666666666666666555555555444444442111 11222 11 22223344555
Q ss_pred HHhhHHHHHHHHHhccCcchhhHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHHHHHHhh
Q 012805 393 LLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWVFHQGVMVCTLNFSLAK 452 (456)
Q Consensus 393 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~~~~~l~~~~~~g~~g~~~~~~~~~ 452 (456)
+..+...+....+.+.+|.|...+.-.++ ....+.+++++-+. +..|..+++.+..
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG-~~~sv~La~~~~~~---~ie~lLL~~~IGi 197 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIG-YVVSVLLARLFLKS---PIEGLLLTLDIGI 197 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh---HHHHHHHHHHHhH
Confidence 66777778888999999999977776666 57777777666543 6777777766554
No 49
>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT).
Probab=33.96 E-value=1.7e+02 Score=22.80 Aligned_cols=29 Identities=7% Similarity=-0.165 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012805 43 LWYIVGPAIFSRLASYSMLVITQAFAGHL 71 (456)
Q Consensus 43 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~l 71 (456)
+.|.++++.+..++..+...++.+...+.
T Consensus 51 ~~ke~~~L~v~~vv~V~s~v~N~VL~K~~ 79 (130)
T PF08627_consen 51 YSKENFKLLVYVVVYVVSGVINRVLYKKM 79 (130)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999988873
No 50
>PRK10739 putative antibiotic transporter; Provisional
Probab=33.53 E-value=3.1e+02 Score=23.52 Aligned_cols=61 Identities=7% Similarity=0.073 Sum_probs=40.0
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHH
Q 012805 323 GVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSIL 387 (456)
Q Consensus 323 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i 387 (456)
.|.+-....+.+.++.|+..++....+. .+.+++.++++.+.+.|+=+-+..+.+...+..
T Consensus 21 ipiflslt~~~~~~~r~~ia~~a~~~a~----~ill~f~~~G~~iL~~fGIsl~afrIAGGilL~ 81 (197)
T PRK10739 21 LPIFMSVLKHLEPKRRRAIMIRELLIAL----LVMLVFLFAGEKILAFLNLRTETVSISGGIILF 81 (197)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4555555555666777777776665555 444567888999999997666556655554433
No 51
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=28.14 E-value=3.5e+02 Score=22.65 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=20.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhcC
Q 012805 217 GVIGTAATLNFSWWILVFGLFGYVSCG 243 (456)
Q Consensus 217 g~~g~a~a~~i~~~~~~~~~~~~~~~~ 243 (456)
+..|...++.+++.+..++...|.++.
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~nl 161 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAFNL 161 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHheeec
Confidence 445667778888888888887777654
No 52
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=23.48 E-value=4.8e+02 Score=22.44 Aligned_cols=60 Identities=7% Similarity=0.028 Sum_probs=38.0
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcHHHHHHHHHHHH
Q 012805 323 GVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSI 386 (456)
Q Consensus 323 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~ 386 (456)
.|..-..-++.+.++.|+..++....++ .+.+.+.++++.+.+.|+-+-+..+.+...+.
T Consensus 21 ip~f~~lt~~~~~~~r~~ia~~a~~~a~----~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL 80 (203)
T PF01914_consen 21 IPIFLSLTKGMSPKERRRIARRASIIAF----IILLIFAFFGQLILNFFGISLPAFRIAGGIIL 80 (203)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4555555555666666677666665554 55566678889999988665555555554443
No 53
>PRK11111 hypothetical protein; Provisional
Probab=22.95 E-value=5.1e+02 Score=22.55 Aligned_cols=62 Identities=5% Similarity=0.044 Sum_probs=38.2
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHH
Q 012805 323 GVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILL 388 (456)
Q Consensus 323 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~ 388 (456)
.|..-..-.+.+.++.|+..++....++ .+.+++.++++++.++|+=+-+..+.+...+...
T Consensus 27 ipiflslt~~~s~~~r~~ia~~a~l~a~----~ill~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ 88 (214)
T PRK11111 27 LPVFISMTSHQTAAERNKTNLTANLSVA----IILLISLFLGDFILNLFGISIDSFRIAGGILVVT 88 (214)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3444445555566666666666555444 4455668888999998876655566555544433
No 54
>PF02592 DUF165: Uncharacterized ACR, YhhQ family COG1738; InterPro: IPR003744 This is a family of uncharacterised proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins.
Probab=22.57 E-value=4.1e+02 Score=21.31 Aligned_cols=105 Identities=9% Similarity=0.118 Sum_probs=49.0
Q ss_pred HHHHhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHH
Q 012805 96 GMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAF 175 (456)
Q Consensus 96 gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~ 175 (456)
++..-..-.++|.+|+ +++++.+..++....+..+...+.....++- .. ++.....-....|+...+......
T Consensus 8 p~~fl~~Dii~E~yG~---~~a~~~i~~g~~~~~~~~~~~~~~~~lp~~~-~~---~~~~~~vf~~~~ri~~aS~~a~li 80 (145)
T PF02592_consen 8 PLTFLITDIISEVYGK---KAARKAIWIGFLANLLFSLLIWIVILLPPAP-FW---QEAFESVFGPTPRIALASLIAFLI 80 (145)
T ss_pred HHHHHHHHHHHHHhCH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-hh---HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3334445677888765 4555666666655555543333222111111 10 222222233445666666666666
Q ss_pred HHHHHHHHHhccchh----HHHHHHHHHHHHHHHHH
Q 012805 176 QFPLQRFLQSQLKNM----VIAWVSLVALLVHIFVS 207 (456)
Q Consensus 176 ~~~~~~~l~~~~~~~----~~~~~~~~~~~~~i~~~ 207 (456)
.+..+......=|.+ ..-..+..+..+...++
T Consensus 81 sq~~d~~if~~lk~~~~~r~lw~R~~~St~isq~iD 116 (145)
T PF02592_consen 81 SQLLDVYIFSKLKRKTKGRSLWLRNNGSTAISQLID 116 (145)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 655555443332222 34444555544444443
No 55
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=22.33 E-value=5e+02 Score=22.28 Aligned_cols=63 Identities=6% Similarity=0.068 Sum_probs=40.6
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHHH
Q 012805 323 GVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLA 389 (456)
Q Consensus 323 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~ 389 (456)
.|.+....++.+.++.++..++....+. .+.+.+.++++.+.+.|+=+-+..+.+...+....
T Consensus 24 ipvfl~lt~~~~~~~r~~ia~~~~l~a~----~ill~f~~~G~~iL~~fgIsl~afrIaGGiiL~~i 86 (201)
T TIGR00427 24 IPIFISLTEYYTAAERNKIAKKANISSF----IILLIFLVFGDTILKLFGISIDAFRIAGGILLFTI 86 (201)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4556566665666666777766655554 44556788889999999766655666655444433
No 56
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=20.68 E-value=8.7e+02 Score=24.39 Aligned_cols=136 Identities=13% Similarity=0.043 Sum_probs=69.9
Q ss_pred HHHHHHHHhhhCCChh-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcH--H--HHHHHHHHHHHHH
Q 012805 321 GTGVRVANELGAGNGK-------GAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSE--A--VLQAVNKLSILLA 389 (456)
Q Consensus 321 ~~~p~~~~~~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~--~--~~~~~~~~l~i~~ 389 (456)
...|++++.-++.+.+ +....-|++++++....+....++.+..-|=-..+-+++ + -......+..+++
T Consensus 225 ivePrl~~~~~~~~~~~~~~~~~~Lt~~EkkgLr~Agi~~l~~lall~ll~iP~~a~LR~~~tG~l~~SPf~~gIIpiI~ 304 (502)
T PF03806_consen 225 IVEPRLGKYDGDADDDEIEEASSSLTPREKKGLRWAGIALLAFLALLLLLLIPENAPLRSPETGSLFPSPFMKGIIPIIF 304 (502)
T ss_pred hhccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCccccCCCCCcccCChHHHhHHHHHH
Confidence 4557877766653211 133355666666655554433333222222112332211 1 1223455556666
Q ss_pred HHHHHhhH-HHHHHHHHhccCcchhhHHHHHHH--HHhhhHHHHHHHHHHhcCchhHHHHHHHHhhhhcC
Q 012805 390 FTILLNSV-QPILSGVAVGSGWQSYVAYINLGC--YYLIGVPLGCLMGWVFHQGVMVCTLNFSLAKLLKK 456 (456)
Q Consensus 390 ~~~~~~~~-~~~~~~~l~~~g~~~~~~~~~~~~--~~i~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~~ 456 (456)
+....-++ +....+-++..+|.-..+--.+-. .+++..-...-+...++|.-.|.+++.-.++++|+
T Consensus 305 l~F~i~GivYG~~sG~iks~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~ 374 (502)
T PF03806_consen 305 LFFLIPGIVYGIASGTIKSDKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKS 374 (502)
T ss_pred HHHHHHHHHHhhhhceecCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh
Confidence 65555444 445566666666665554433322 12222233334445678899999999999988874
No 57
>PRK03612 spermidine synthase; Provisional
Probab=20.42 E-value=9e+02 Score=24.46 Aligned_cols=47 Identities=23% Similarity=0.199 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHH
Q 012805 192 IAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYV 240 (456)
Q Consensus 192 ~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~ 240 (456)
...-++.+.+-.+...+++++.+ |..+..+....-++...++..+..
T Consensus 151 y~~ntlGa~~G~l~~~~vLlp~l--G~~~t~~~~a~l~~~~a~~~~~~~ 197 (521)
T PRK03612 151 LAADYLGALVGGLAFPFLLLPRL--GLIRTAALTGSLNLLAALVFLWLF 197 (521)
T ss_pred HhHHhHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555666666655 665555444444444444333333
No 58
>PRK10995 inner membrane protein; Provisional
Probab=20.30 E-value=5.8e+02 Score=22.24 Aligned_cols=60 Identities=10% Similarity=0.004 Sum_probs=37.3
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcHHHHHHHHHHHH
Q 012805 323 GVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSI 386 (456)
Q Consensus 323 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~ 386 (456)
.|.+-..-++.+.++.|+..++....++ .+.++..+.++.+.+.|+-+.+..+.+...+.
T Consensus 25 ~pif~~lt~~~~~~~r~~ia~~~~~~a~----~ill~f~~~G~~il~~fgIs~~a~rIaGGilL 84 (221)
T PRK10995 25 VALFLGLSGNMTPEERNRQALMASVYVF----AIMMVAFYAGQLVMSTFGISIPGLRIAGGLIV 84 (221)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3555555555566666777766655554 44556677888888888766555555554433
Done!