Query 012805
Match_columns 456
No_of_seqs 248 out of 1838
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 16:34:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012805.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012805hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 5E-49 1.7E-53 387.6 39.2 420 33-455 4-435 (460)
2 3mkt_A Multi antimicrobial ext 99.9 2E-20 6.7E-25 183.6 21.9 207 36-243 233-446 (460)
3 4aps_A DI-OR tripeptide H+ sym 32.6 3E+02 0.01 25.5 24.2 11 323-333 339-349 (491)
4 2k1k_A Ephrin type-A receptor 31.7 55 0.0019 18.6 3.2 24 218-241 13-36 (38)
5 2ks1_B Epidermal growth factor 23.0 1.3E+02 0.0043 17.8 4.5 13 231-243 26-38 (44)
6 2l2t_A Receptor tyrosine-prote 22.1 1.3E+02 0.0045 17.7 3.7 7 237-243 31-37 (44)
7 2jwa_A Receptor tyrosine-prote 19.6 1.2E+02 0.0041 17.9 3.1 10 234-243 29-38 (44)
8 1pw4_A Glycerol-3-phosphate tr 14.3 6.7E+02 0.023 22.5 38.7 39 41-79 28-67 (451)
9 4hkr_A Calcium release-activat 12.7 5.7E+02 0.019 20.9 15.0 80 73-153 57-144 (214)
10 3o7q_A L-fucose-proton symport 10.3 8.7E+02 0.03 21.6 33.8 39 43-81 28-68 (438)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=5e-49 Score=387.60 Aligned_cols=420 Identities=19% Similarity=0.309 Sum_probs=387.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCC
Q 012805 33 TRTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAK 112 (456)
Q Consensus 33 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~ 112 (456)
+...++..|++++.++|.++++++..+.+.+|+.+++|+|++++|+++++.++..+ ...+..|++.+..+.++|++|++
T Consensus 4 ~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~-~~~~~~g~~~~~~~~is~~~g~~ 82 (460)
T 3mkt_A 4 VHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLP-SILFGVGLLMALVPVVAQLNGAG 82 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHH-HHHHHHHHHHHHGGGCTTTTSSS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCC
Confidence 35567889999999999999999999999999999999999999999999999777 77788999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHH
Q 012805 113 RYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI 192 (456)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (456)
|+++.++.+++++.+..+.+++..++..+.++++.+++.+++..+.+..|+++.+++.++..+....++.+++.||+|.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 162 (460)
T 3mkt_A 83 RQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPA 162 (460)
T ss_dssp STTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTT
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 99999999999999999999887766777888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-c---CCccchhHHHHHHHHHHHHHHHHHHHhcCCccc--c-CCCCCHhhHhcHHHHHH
Q 012805 193 AWVSLVALLVHIFVSWLFVNR-M---QLGVIGTAATLNFSWWILVFGLFGYVSCGGCPL--T-WTGFTLEAFSGLWQFVK 265 (456)
Q Consensus 193 ~~~~~~~~~~~i~~~~~li~~-~---~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~l~ 265 (456)
+..++++.++|+++++++++. + ++|+.|+++++.+++.+..++...+.++++... + ++++.+.+++..|++++
T Consensus 163 ~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (460)
T 3mkt_A 163 MVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFR 242 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHH
Confidence 999999999999999999975 4 589999999999999999998888887652211 1 12233345678999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHH
Q 012805 266 LSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVS 345 (456)
Q Consensus 266 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~i~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~ 345 (456)
+++|.++++....+.+.+++.+++++| ++++|+|+++.++.++...+..+++++..|.+++++|++|.+++++..+++
T Consensus 243 ~~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~ 320 (460)
T 3mkt_A 243 LGFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVG 320 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999999999999999996 679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHhh
Q 012805 346 VVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLI 425 (456)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~ 425 (456)
.++...++++.+++++++++++..+|.+|+++.+.+.+++++++++.++++++....+++++.||+|.+++.++++.|++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 400 (460)
T 3mkt_A 321 LMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVL 400 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888999999999999999999999999999999999999999999998899
Q ss_pred hHHHHHHHHHH----hc-CchhHHHHHHHHhhhhc
Q 012805 426 GVPLGCLMGWV----FH-QGVMVCTLNFSLAKLLK 455 (456)
Q Consensus 426 ~i~~~~~l~~~----~~-~g~~g~~~~~~~~~~~~ 455 (456)
++|+.+++.+. ++ +|+.|+|++..++++++
T Consensus 401 ~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~ 435 (460)
T 3mkt_A 401 GLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAA 435 (460)
T ss_dssp HHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccccCchhHHHHHHHHHHHH
Confidence 99999999998 55 79999999999998764
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.86 E-value=2e-20 Score=183.58 Aligned_cols=207 Identities=14% Similarity=0.082 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCcc
Q 012805 36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYY 115 (456)
Q Consensus 36 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 115 (456)
+++..|++++.++|.+++++...+...+|+.+++++|++++++++++.++.++ ...+..+++++..|.+++.+|++|++
T Consensus 233 ~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~-~~~~~~~~~~a~~p~i~~~~g~~~~~ 311 (460)
T 3mkt_A 233 QPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSL-VFMFPMSIGAAVSIRVGHKLGEQDTK 311 (460)
T ss_dssp TTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34567899999999999999999999999999999999999999999999998 77899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHH
Q 012805 116 MLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAW 194 (456)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (456)
++++..+....+...++++..++ ..+.+++..++..|++..+.+..++++.+++.++..++....+.+++.||+|.++.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 391 (460)
T 3mkt_A 312 GAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFH 391 (460)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 99999999999999999888765 78888899998888888889999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHh----cC-CccchhHHHHHHHHHHHHHHHHHHHhcC
Q 012805 195 VSLVAL-LVHIFVSWLFVNR----MQ-LGVIGTAATLNFSWWILVFGLFGYVSCG 243 (456)
Q Consensus 195 ~~~~~~-~~~i~~~~~li~~----~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 243 (456)
.++++. ++++++++++.+. .+ +|+.|+++++.+++.+..++..+.++|+
T Consensus 392 ~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 392 RTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987 9999999999987 55 7999999999999999988776666553
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=32.63 E-value=3e+02 Score=25.47 Aligned_cols=11 Identities=0% Similarity=-0.293 Sum_probs=5.3
Q ss_pred HHHHHHhhhCC
Q 012805 323 GVRVANELGAG 333 (456)
Q Consensus 323 ~p~~~~~~g~~ 333 (456)
...+.+.++++
T Consensus 339 ~~~l~~r~~~r 349 (491)
T 4aps_A 339 FAWLWTAWKKN 349 (491)
T ss_dssp HHHHHHHTTTC
T ss_pred HHHHHHHHhcc
Confidence 34445555544
No 4
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=31.67 E-value=55 Score=18.60 Aligned_cols=24 Identities=13% Similarity=-0.088 Sum_probs=10.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHh
Q 012805 218 VIGTAATLNFSWWILVFGLFGYVS 241 (456)
Q Consensus 218 ~~g~a~a~~i~~~~~~~~~~~~~~ 241 (456)
+.|+.++.+++-.+...+.+++++
T Consensus 13 IAGiVvG~v~gv~li~~l~~~~~r 36 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVFRSR 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eeeeehHHHHHHHHHHHHHHHHee
Confidence 344455555444444444343433
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=22.98 E-value=1.3e+02 Score=17.81 Aligned_cols=13 Identities=8% Similarity=0.260 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhcC
Q 012805 231 ILVFGLFGYVSCG 243 (456)
Q Consensus 231 ~~~~~~~~~~~~~ 243 (456)
+..+..+++++++
T Consensus 26 ii~~~~~~~~RRr 38 (44)
T 2ks1_B 26 VVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhh
Confidence 3334444455544
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=22.10 E-value=1.3e+02 Score=17.73 Aligned_cols=7 Identities=29% Similarity=0.102 Sum_probs=3.1
Q ss_pred HHHHhcC
Q 012805 237 FGYVSCG 243 (456)
Q Consensus 237 ~~~~~~~ 243 (456)
+++++++
T Consensus 31 ~~~~RRR 37 (44)
T 2l2t_A 31 AVYVRRK 37 (44)
T ss_dssp HHHHHTT
T ss_pred HHHhhhh
Confidence 3444443
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=19.64 E-value=1.2e+02 Score=17.90 Aligned_cols=10 Identities=0% Similarity=-0.360 Sum_probs=4.6
Q ss_pred HHHHHHHhcC
Q 012805 234 FGLFGYVSCG 243 (456)
Q Consensus 234 ~~~~~~~~~~ 243 (456)
+....|++|+
T Consensus 29 l~~~~~~RRR 38 (44)
T 2jwa_A 29 VVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhheehh
Confidence 3334455554
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=14.28 E-value=6.7e+02 Score=22.52 Aligned_cols=39 Identities=8% Similarity=-0.135 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHH
Q 012805 41 KKLWYIVGPAIFSRLASYSMLVITQAFAGHL-GDIELAAI 79 (456)
Q Consensus 41 ~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~ 79 (456)
+.+.....-.+...............+..++ ++.+.+..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~ 67 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFA 67 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHH
Confidence 3344444444444444333344444444433 33444433
No 9
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=12.75 E-value=5.7e+02 Score=20.89 Aligned_cols=80 Identities=15% Similarity=0.119 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh--------cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 012805 73 DIELAAISIANNVIVGFDFGLLLGMASALETLCGQAF--------GAKRYYMLGVYMQRSWIVLFVCCVLLLPLYLFASP 144 (456)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (456)
+.-+.+|++...+.-. ...+..-+++-+.|.+-..- .+.-.++.+.++-....++..+|++..+.-....-
T Consensus 57 ~~LLi~fav~Ttllv~-vml~AlMIsTcILPnIeav~~~h~~~~v~esPH~r~~~yIE~AW~fST~lGi~LFL~evall~ 135 (214)
T 4hkr_A 57 PGMLIAFAICTTLLVA-VHMLALMISTCILPNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAILC 135 (214)
T ss_dssp --CHHHHHHHHHHHHH-HHHHHHHHHHHTTTC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3446788888877776 56677777776666655432 23345678888888888888888777665444455
Q ss_pred HHHHcCCCH
Q 012805 145 VLKLLGQPD 153 (456)
Q Consensus 145 ~~~~~~~~~ 153 (456)
++.++..++
T Consensus 136 WVKF~~~~~ 144 (214)
T 4hkr_A 136 WVKFYDLSR 144 (214)
T ss_dssp HHHHTTTCH
T ss_pred eEEeecCCc
Confidence 666665554
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=10.33 E-value=8.7e+02 Score=21.60 Aligned_cols=39 Identities=8% Similarity=0.062 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ChHHHHHHHH
Q 012805 43 LWYIVGPAIFSRLASYSMLVITQAFAGHL--GDIELAAISI 81 (456)
Q Consensus 43 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~l--g~~~~~~~~~ 81 (456)
+.-...-.+...+...........+..++ ++.+.+....
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 68 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQS 68 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33333333444444444444444444445 4555544433
Done!