Query 012805
Match_columns 456
No_of_seqs 248 out of 1838
Neff 10.5
Searched_HMMs 13730
Date Mon Mar 25 16:35:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012805.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012805hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pv7a_ f.38.1.2 (A:) Lactose 27.7 1.5E+02 0.011 24.0 18.4 24 217-240 377-400 (417)
2 d1nkzb_ f.3.1.1 (B:) Light-har 13.2 1E+02 0.0073 16.2 3.9 34 334-367 7-40 (41)
3 d1lghb_ f.3.1.1 (B:) Light-har 11.6 86 0.0063 17.0 2.4 33 334-366 10-42 (43)
4 d1m56d_ f.23.8.1 (D:) Bacteria 8.9 1.6E+02 0.011 15.7 4.2 33 330-362 4-36 (42)
5 d3dhwa1 f.58.1.1 (A:6-208) D-m 7.8 3E+02 0.022 19.9 5.6 41 34-74 124-165 (203)
6 d1jo5a_ f.3.1.1 (A:) Light-har 6.3 1.2E+02 0.0089 16.8 1.6 33 334-366 15-47 (48)
7 d1ijdb_ f.3.1.1 (B:) Light-har 4.3 2.9E+02 0.021 14.3 4.1 32 333-364 7-38 (40)
8 d1pw4a_ f.38.1.1 (A:) Glycerol 3.8 8.8E+02 0.064 19.1 37.0 19 315-333 297-315 (447)
9 d2yvxa3 f.57.1.1 (A:276-448) M 2.8 8.6E+02 0.062 17.2 6.8 34 104-137 62-97 (173)
10 d1jb0i_ f.23.17.1 (I:) Subunit 2.5 4.6E+02 0.034 13.2 2.8 20 433-452 14-33 (38)
No 1
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=27.70 E-value=1.5e+02 Score=24.03 Aligned_cols=24 Identities=13% Similarity=-0.034 Sum_probs=9.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHH
Q 012805 217 GVIGTAATLNFSWWILVFGLFGYV 240 (456)
Q Consensus 217 g~~g~a~a~~i~~~~~~~~~~~~~ 240 (456)
|.....+...+......++....+
T Consensus 377 g~~~~~~~~~~~~~~~~~~~~~~l 400 (417)
T d1pv7a_ 377 GFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhh
Confidence 544443333333333333333333
No 2
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=13.17 E-value=1e+02 Score=16.23 Aligned_cols=34 Identities=12% Similarity=-0.046 Sum_probs=25.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012805 334 NGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNEL 367 (456)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 367 (456)
+.|+..+....+.+....+++..=++.+...+|+
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 4678888888899988888887777766666553
No 3
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=11.59 E-value=86 Score=16.99 Aligned_cols=33 Identities=6% Similarity=0.069 Sum_probs=19.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012805 334 NGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNE 366 (456)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (456)
+-++.++.+..+......+++..=++.....++
T Consensus 10 EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 10 EAIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345566666677766666666665555555443
No 4
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.87 E-value=1.6e+02 Score=15.71 Aligned_cols=33 Identities=6% Similarity=-0.089 Sum_probs=19.7
Q ss_pred hhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012805 330 LGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMI 362 (456)
Q Consensus 330 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (456)
.|+=|.+...+.+.-.+++....++.+..++++
T Consensus 4 HG~MDi~vQEKTF~gFik~~t~~~i~~i~~lif 36 (42)
T d1m56d_ 4 AGSMDITQQEKTFAGFVRMVTWAAVVIVAALIF 36 (42)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666677766666666665554444443
No 5
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=7.81 E-value=3e+02 Score=19.95 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChH
Q 012805 34 RTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDI 74 (456)
Q Consensus 34 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~ 74 (456)
.+++...|-++..+.|..++.........+....+.. .|..
T Consensus 124 s~~q~~~~vilP~~~p~i~~~~~~~~~~~i~~~~~~~~ig~~ 165 (203)
T d3dhwa1 124 TPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG 165 (203)
T ss_dssp CTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTCC
T ss_pred chhhhhHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556667788888888888777777777766666 4544
No 6
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.30 E-value=1.2e+02 Score=16.78 Aligned_cols=33 Identities=6% Similarity=0.048 Sum_probs=20.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012805 334 NGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNE 366 (456)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (456)
+-++.++.+..++.....+++..=++....+++
T Consensus 15 EA~E~H~~~~~g~~~F~~iAvvAH~L~w~wrPW 47 (48)
T d1jo5a_ 15 QAQELHSVYMSGLWLFSAVAIVAHLAVYIWRPW 47 (48)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345566666666666666666666666555544
No 7
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=4.30 E-value=2.9e+02 Score=14.26 Aligned_cols=32 Identities=9% Similarity=0.052 Sum_probs=22.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012805 333 GNGKGAKFATIVSVVTSVIIGLFFWLLIMIYH 364 (456)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (456)
++.|+.++....+.+....+++..=++.+...
T Consensus 7 ~eaEElHk~vIdGtRvF~~iA~~AH~La~~~t 38 (40)
T d1ijdb_ 7 EQAEELHKHVIDGTRVFLVIAAIAHFLAFTLT 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHhcC
Confidence 34577888888888888877776655555443
No 8
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=3.79 E-value=8.8e+02 Score=19.08 Aligned_cols=19 Identities=5% Similarity=-0.298 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHhhhCC
Q 012805 315 PLAFFAGTGVRVANELGAG 333 (456)
Q Consensus 315 ~~~l~~~~~p~~~~~~g~~ 333 (456)
...++......+++..+++
T Consensus 297 ~~~~~~~~~g~~~~~~~~~ 315 (447)
T d1pw4a_ 297 AGIPGTLLCGWMSDKVFRG 315 (447)
T ss_dssp HHHHHHHHHHHHHHHTSTT
T ss_pred hhhhhhhhhhhhhhhcccc
Confidence 3344445555556555544
No 9
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=2.84 E-value=8.6e+02 Score=17.18 Aligned_cols=34 Identities=12% Similarity=-0.131 Sum_probs=20.4
Q ss_pred HHHHHh--cCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 012805 104 LCGQAF--GAKRYYMLGVYMQRSWIVLFVCCVLLLP 137 (456)
Q Consensus 104 ~~s~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (456)
.+-|.+ |+-++++.++.+.+=+..++..+..+..
T Consensus 62 i~iR~La~g~i~~~~~~~~l~kE~~vgll~G~~l~~ 97 (173)
T d2yvxa3 62 LIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSF 97 (173)
T ss_dssp HHHHHHHTTCSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 4445667777777777777766655543
No 10
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=2.48 E-value=4.6e+02 Score=13.17 Aligned_cols=20 Identities=5% Similarity=-0.194 Sum_probs=8.7
Q ss_pred HHHHhcCchhHHHHHHHHhh
Q 012805 433 MGWVFHQGVMVCTLNFSLAK 452 (456)
Q Consensus 433 l~~~~~~g~~g~~~~~~~~~ 452 (456)
+.....|....+..++++.+
T Consensus 14 ~iPvv~wl~p~vvMglLFiy 33 (38)
T d1jb0i_ 14 FIPVVCWLMPTVVMGLLFLY 33 (38)
T ss_dssp HHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhee
Confidence 33333344444445544443
Done!